Query 042717
Match_columns 474
No_of_seqs 388 out of 2527
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 15:18:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hma_A Probable tRNA (5-methyl 100.0 2.2E-84 7.5E-89 671.8 31.3 359 13-385 4-368 (376)
2 2der_A TRNA-specific 2-thiouri 100.0 3.1E-84 1E-88 671.2 27.4 359 12-385 12-377 (380)
3 1vl2_A Argininosuccinate synth 99.9 5.4E-28 1.9E-32 251.4 9.4 182 17-232 13-207 (421)
4 3k32_A Uncharacterized protein 99.9 1.8E-27 6E-32 226.0 8.5 190 19-254 7-201 (203)
5 1wy5_A TILS, hypothetical UPF0 99.9 3.7E-25 1.3E-29 223.5 14.4 173 17-221 23-200 (317)
6 3a2k_A TRNA(Ile)-lysidine synt 99.9 3.1E-25 1.1E-29 235.2 14.4 183 8-221 9-198 (464)
7 1kor_A Argininosuccinate synth 99.9 5.2E-25 1.8E-29 229.1 10.3 213 19-269 1-253 (400)
8 3fiu_A NH(3)-dependent NAD(+) 99.9 2.7E-24 9.2E-29 210.5 11.0 167 17-220 28-198 (249)
9 1ni5_A Putative cell cycle pro 99.9 6.6E-24 2.3E-28 223.2 14.3 168 17-221 12-187 (433)
10 1k92_A Argininosuccinate synth 99.9 1.1E-23 3.7E-28 221.2 13.3 183 17-232 9-208 (455)
11 2pg3_A Queuosine biosynthesis 99.9 7E-23 2.4E-27 197.4 15.0 169 19-209 3-181 (232)
12 3p52_A NH(3)-dependent NAD(+) 99.9 2.3E-23 7.7E-28 204.0 10.5 160 17-220 25-189 (249)
13 3bl5_A Queuosine biosynthesis 99.9 6.8E-23 2.3E-27 194.5 13.3 167 18-208 3-176 (219)
14 2nz2_A Argininosuccinate synth 99.9 8.7E-23 3E-27 213.0 13.4 186 18-239 5-205 (413)
15 1wxi_A NH(3)-dependent NAD(+) 99.9 2.6E-22 9E-27 199.1 11.9 160 18-220 40-216 (275)
16 2c5s_A THII, probable thiamine 99.9 5.1E-22 1.7E-26 207.6 12.8 171 12-220 181-356 (413)
17 1kqp_A NAD+ synthase, NH(3)-de 99.8 2.4E-21 8.1E-26 191.8 10.7 162 18-220 38-213 (271)
18 2dpl_A GMP synthetase, GMP syn 99.8 5.5E-21 1.9E-25 192.5 13.4 166 18-220 20-193 (308)
19 3tqi_A GMP synthase [glutamine 99.8 1.6E-21 5.6E-26 209.6 9.3 173 18-220 230-410 (527)
20 2vxo_A GMP synthase [glutamine 99.8 1.1E-20 3.6E-25 208.8 15.1 184 18-221 240-448 (697)
21 2e18_A NH(3)-dependent NAD(+) 99.8 6.7E-21 2.3E-25 186.7 10.1 159 17-220 21-185 (257)
22 2ywb_A GMP synthase [glutamine 99.8 2.6E-20 9E-25 199.2 14.6 171 18-220 209-386 (503)
23 1xng_A NH(3)-dependent NAD(+) 99.8 1.5E-20 5.3E-25 185.4 11.3 159 18-220 25-188 (268)
24 1vbk_A Hypothetical protein PH 99.8 1.6E-20 5.3E-25 189.1 9.7 127 12-207 173-307 (307)
25 1sur_A PAPS reductase; assimil 99.8 3.1E-20 1.1E-24 176.9 10.9 158 18-210 44-201 (215)
26 1gpm_A GMP synthetase, XMP ami 99.8 3E-20 1E-24 199.7 11.9 173 18-220 227-408 (525)
27 3q4g_A NH(3)-dependent NAD(+) 99.8 8E-20 2.7E-24 181.4 10.6 165 17-219 39-224 (279)
28 3uow_A GMP synthetase; structu 99.8 1.1E-19 3.8E-24 196.5 10.1 173 18-221 255-440 (556)
29 3dpi_A NAD+ synthetase; ssgcid 99.8 1.7E-19 5.8E-24 179.3 9.9 162 17-221 45-226 (285)
30 2o8v_A Phosphoadenosine phosph 99.7 7.8E-18 2.7E-22 164.7 9.5 158 18-210 45-202 (252)
31 3ilv_A Glutamine-dependent NAD 99.7 2.9E-17 1E-21 180.2 12.4 165 17-220 302-521 (634)
32 3n05_A NH(3)-dependent NAD(+) 99.6 1.4E-16 4.9E-21 173.4 9.3 157 17-218 325-498 (590)
33 1zun_A Sulfate adenylyltransfe 99.6 2.3E-15 7.8E-20 152.6 11.8 165 19-211 47-226 (325)
34 3rjz_A N-type ATP pyrophosphat 99.5 2.1E-14 7.3E-19 139.1 11.4 183 19-261 5-192 (237)
35 2oq2_A Phosphoadenosine phosph 99.5 2.7E-14 9.2E-19 140.3 11.4 154 20-210 43-207 (261)
36 3sdb_A Glutamine-dependent NAD 99.5 2E-14 6.7E-19 158.8 6.5 152 17-205 360-521 (680)
37 2goy_A Adenosine phosphosulfat 99.3 4E-12 1.4E-16 125.7 12.4 157 19-210 55-216 (275)
38 2wsi_A FAD synthetase; transfe 99.2 5.6E-11 1.9E-15 119.3 12.1 136 19-210 54-214 (306)
39 1q15_A CARA; CMPR, (2S,5S)-5-c 99.0 4.7E-10 1.6E-14 119.9 8.9 113 18-148 238-350 (503)
40 1jgt_A Beta-lactam synthetase; 99.0 6E-10 2E-14 119.3 8.5 112 18-148 241-353 (513)
41 1ct9_A Asparagine synthetase B 98.9 2.5E-09 8.5E-14 115.5 11.8 113 18-148 226-353 (553)
42 4f4h_A Glutamine dependent NAD 98.8 1.4E-08 4.7E-13 110.0 10.1 149 17-206 299-453 (565)
43 3fwk_A FMN adenylyltransferase 98.5 1.1E-06 3.7E-11 87.8 13.2 134 19-210 59-217 (308)
44 3da8_A Probable 5'-phosphoribo 82.9 3.2 0.00011 39.0 7.8 87 16-147 10-101 (215)
45 3o1l_A Formyltetrahydrofolate 81.7 7.3 0.00025 38.4 10.2 87 17-148 104-194 (302)
46 3kcq_A Phosphoribosylglycinami 79.4 5.2 0.00018 37.5 7.9 85 17-147 7-94 (215)
47 3dlo_A Universal stress protei 78.7 11 0.00038 32.3 9.4 100 18-146 24-128 (155)
48 3hgm_A Universal stress protei 78.7 8.7 0.0003 31.9 8.6 34 19-52 3-40 (147)
49 3av3_A Phosphoribosylglycinami 77.6 5.5 0.00019 37.1 7.4 87 19-147 4-94 (212)
50 1jmv_A USPA, universal stress 77.4 15 0.00051 30.3 9.6 33 19-51 3-39 (141)
51 3tqr_A Phosphoribosylglycinami 77.1 6.8 0.00023 36.7 7.9 89 17-147 4-95 (215)
52 4ds3_A Phosphoribosylglycinami 76.4 11 0.00037 35.1 9.1 88 18-147 7-98 (209)
53 3nbm_A PTS system, lactose-spe 76.4 7.8 0.00027 32.3 7.3 75 17-91 5-87 (108)
54 3auf_A Glycinamide ribonucleot 76.1 9 0.00031 36.1 8.6 88 18-147 22-113 (229)
55 3loq_A Universal stress protei 75.8 35 0.0012 32.1 12.9 91 16-146 168-262 (294)
56 2ywr_A Phosphoribosylglycinami 75.4 8.1 0.00028 36.0 8.0 87 19-147 2-92 (216)
57 3n0v_A Formyltetrahydrofolate 74.6 22 0.00077 34.5 11.3 85 17-147 89-178 (286)
58 1meo_A Phosophoribosylglycinam 74.5 9.3 0.00032 35.5 8.1 87 19-147 1-91 (209)
59 3tnj_A Universal stress protei 74.1 37 0.0012 28.1 12.1 35 18-52 6-44 (150)
60 3s3t_A Nucleotide-binding prot 72.0 33 0.0011 28.2 10.5 36 18-53 5-44 (146)
61 1jkx_A GART;, phosphoribosylgl 71.9 12 0.0004 34.9 8.1 87 19-147 1-91 (212)
62 3sjy_A Translation initiation 71.5 21 0.00073 35.9 10.7 91 280-381 297-402 (403)
63 3lou_A Formyltetrahydrofolate 70.9 25 0.00085 34.4 10.6 85 17-147 94-183 (292)
64 1d2e_A Elongation factor TU (E 70.3 7 0.00024 39.5 6.7 100 279-385 278-387 (397)
65 3fdx_A Putative filament prote 68.0 28 0.00096 28.5 9.1 34 19-52 2-41 (143)
66 1zun_B Sulfate adenylate trans 67.3 16 0.00054 37.4 8.7 96 280-381 315-433 (434)
67 3p9x_A Phosphoribosylglycinami 66.9 26 0.00088 32.6 9.3 86 19-147 3-93 (211)
68 2z08_A Universal stress protei 66.7 24 0.00082 28.9 8.4 34 19-52 3-40 (137)
69 1f60_A Elongation factor EEF1A 66.4 16 0.00053 37.8 8.5 37 348-385 399-441 (458)
70 2dum_A Hypothetical protein PH 65.4 61 0.0021 27.5 11.1 35 18-52 5-43 (170)
71 2c78_A Elongation factor TU-A; 65.2 8.7 0.0003 38.8 6.2 35 348-383 369-403 (405)
72 1mjh_A Protein (ATP-binding do 65.1 57 0.002 27.3 10.7 35 18-52 5-43 (162)
73 1kk1_A EIF2gamma; initiation o 65.0 26 0.00089 35.3 9.7 51 325-381 355-409 (410)
74 3mt0_A Uncharacterized protein 64.6 39 0.0013 31.7 10.4 91 17-146 6-100 (290)
75 3g5j_A Putative ATP/GTP bindin 61.8 7.5 0.00026 32.2 4.2 27 19-45 90-117 (134)
76 3foj_A Uncharacterized protein 60.5 9.7 0.00033 30.3 4.5 29 17-45 55-83 (100)
77 1tq8_A Hypothetical protein RV 59.2 73 0.0025 27.2 10.4 32 17-48 16-50 (163)
78 1s0u_A EIF-2-gamma, translatio 58.4 42 0.0014 33.7 9.9 51 325-381 353-407 (408)
79 3eme_A Rhodanese-like domain p 57.3 11 0.00038 30.0 4.4 30 17-46 55-84 (103)
80 3fg9_A Protein of universal st 57.0 58 0.002 27.2 9.2 36 17-52 14-55 (156)
81 3iwh_A Rhodanese-like domain p 56.9 11 0.00039 30.5 4.4 30 17-46 55-84 (103)
82 3gk5_A Uncharacterized rhodane 56.5 12 0.00041 30.3 4.4 30 17-46 54-83 (108)
83 2yxb_A Coenzyme B12-dependent 56.0 37 0.0013 29.8 8.0 57 17-91 17-78 (161)
84 3zqu_A Probable aromatic acid 55.2 12 0.0004 34.9 4.6 33 17-49 3-38 (209)
85 3idf_A USP-like protein; unive 53.1 50 0.0017 26.8 8.0 34 19-52 2-40 (138)
86 2jtq_A Phage shock protein E; 52.3 18 0.00061 27.6 4.6 29 16-44 39-67 (85)
87 3nrb_A Formyltetrahydrofolate 49.9 22 0.00074 34.7 5.8 86 17-147 87-177 (287)
88 1wb1_A Translation elongation 47.3 15 0.0005 38.3 4.4 100 280-385 273-395 (482)
89 3mcu_A Dipicolinate synthase, 47.3 19 0.00064 33.5 4.6 34 17-50 4-41 (207)
90 2gm3_A Unknown protein; AT3G01 47.0 1.2E+02 0.0042 25.6 9.9 23 124-146 113-135 (175)
91 1r5b_A Eukaryotic peptide chai 46.4 29 0.00098 35.9 6.4 36 347-383 424-465 (467)
92 3obi_A Formyltetrahydrofolate 46.1 30 0.001 33.7 6.1 86 17-147 88-178 (288)
93 1wv9_A Rhodanese homolog TT165 45.6 22 0.00076 27.7 4.3 26 19-44 54-79 (94)
94 1tq1_A AT5G66040, senescence-a 45.5 18 0.00063 30.1 4.0 30 17-46 81-111 (129)
95 3mca_A HBS1, elongation factor 44.5 19 0.00065 38.6 4.8 100 279-383 477-591 (592)
96 1jny_A EF-1-alpha, elongation 44.1 1.1E+02 0.0039 30.9 10.5 37 348-385 387-429 (435)
97 2elf_A Protein translation elo 41.4 32 0.0011 34.4 5.7 94 279-381 265-370 (370)
98 2fsx_A RV0390, COG0607: rhodan 41.3 25 0.00084 30.0 4.2 30 17-46 79-109 (148)
99 1ccw_A Protein (glutamate muta 41.1 1.6E+02 0.0055 24.7 11.0 58 18-92 3-64 (137)
100 3avx_A Elongation factor TS, e 40.9 48 0.0016 38.8 7.6 39 346-385 640-678 (1289)
101 3hix_A ALR3790 protein; rhodan 40.0 26 0.00089 28.1 3.9 28 17-44 51-78 (106)
102 2ejb_A Probable aromatic acid 39.6 28 0.00095 31.7 4.5 31 19-49 2-35 (189)
103 3flh_A Uncharacterized protein 39.4 27 0.00093 28.8 4.1 28 17-44 70-99 (124)
104 1vee_A Proline-rich protein fa 38.9 19 0.00065 30.3 3.0 29 16-44 72-100 (134)
105 3mt0_A Uncharacterized protein 38.6 2E+02 0.0068 26.6 10.7 36 17-52 133-179 (290)
106 3d1p_A Putative thiosulfate su 38.4 27 0.00094 29.2 4.0 28 17-44 90-117 (139)
107 1qxn_A SUD, sulfide dehydrogen 37.8 29 0.00098 29.4 4.0 29 17-45 81-110 (137)
108 3nhv_A BH2092 protein; alpha-b 37.5 35 0.0012 29.1 4.6 29 17-45 71-101 (144)
109 2hhg_A Hypothetical protein RP 37.4 33 0.0011 28.6 4.3 30 17-46 85-115 (139)
110 1gmx_A GLPE protein; transfera 37.3 35 0.0012 27.2 4.3 30 17-46 57-87 (108)
111 3e1y_E Eukaryotic peptide chai 37.3 49 0.0017 30.1 5.8 101 279-385 77-201 (204)
112 1jzt_A Hypothetical 27.5 kDa p 36.4 57 0.0019 30.9 6.2 55 19-86 59-117 (246)
113 2k0z_A Uncharacterized protein 36.2 39 0.0013 27.2 4.5 34 17-52 55-88 (110)
114 3lqk_A Dipicolinate synthase s 35.4 22 0.00076 32.8 3.1 35 16-50 5-43 (201)
115 1g63_A Epidermin modifying enz 34.0 28 0.00095 31.5 3.4 33 19-51 3-38 (181)
116 3qjg_A Epidermin biosynthesis 33.9 29 0.00099 31.3 3.5 33 18-50 5-40 (175)
117 1qzu_A Hypothetical protein MD 32.2 29 0.00098 32.1 3.3 34 16-49 17-54 (206)
118 3ilm_A ALR3790 protein; rhodan 32.2 40 0.0014 28.6 4.1 28 17-44 55-82 (141)
119 3t8j_A Purine nucleosidase, (I 31.1 1.6E+02 0.0056 28.6 8.8 59 19-87 2-62 (311)
120 1p3y_1 MRSD protein; flavoprot 30.6 24 0.00083 32.3 2.4 33 17-49 7-42 (194)
121 3rjz_A N-type ATP pyrophosphat 30.5 28 0.00096 33.0 3.0 89 33-146 54-150 (237)
122 3olq_A Universal stress protei 29.4 2.7E+02 0.0092 25.9 10.0 35 17-51 6-44 (319)
123 2l2q_A PTS system, cellobiose- 27.7 64 0.0022 26.2 4.4 72 19-90 5-84 (109)
124 4avf_A Inosine-5'-monophosphat 27.3 3.2E+02 0.011 28.2 10.8 59 20-90 219-278 (490)
125 1mvl_A PPC decarboxylase athal 26.4 43 0.0015 31.0 3.4 32 17-49 18-52 (209)
126 2o8n_A APOA-I binding protein; 25.8 79 0.0027 30.3 5.3 53 19-85 80-136 (265)
127 3tva_A Xylose isomerase domain 25.1 2.5E+02 0.0085 25.8 8.7 93 34-141 26-121 (290)
128 3u7q_B Nitrogenase molybdenum- 25.1 3.7E+02 0.013 28.1 10.8 33 17-51 363-396 (523)
129 4f67_A UPF0176 protein LPG2838 24.8 62 0.0021 31.0 4.3 31 16-46 179-210 (265)
130 2bw0_A 10-FTHFDH, 10-formyltet 24.8 76 0.0026 31.3 5.1 57 18-89 22-79 (329)
131 2zvr_A Uncharacterized protein 24.7 2.9E+02 0.01 25.4 9.2 106 14-140 16-131 (290)
132 2bln_A Protein YFBG; transfera 24.3 88 0.003 30.4 5.4 87 19-147 1-87 (305)
133 1z7e_A Protein aRNA; rossmann 23.5 84 0.0029 33.6 5.5 60 19-89 1-60 (660)
134 1sbz_A Probable aromatic acid 23.4 70 0.0024 29.3 4.2 31 19-49 1-35 (197)
135 2mas_A Inosine-uridine nucleos 22.7 2.1E+02 0.0071 27.7 7.8 59 19-87 2-64 (314)
136 1e0c_A Rhodanese, sulfurtransf 22.2 81 0.0028 29.4 4.6 29 16-44 221-249 (271)
137 1yoe_A Hypothetical protein YB 21.8 2.1E+02 0.0073 27.8 7.7 62 16-87 11-76 (322)
138 2c40_A Inosine-uridine preferr 21.5 1.6E+02 0.0055 28.4 6.7 59 19-87 2-64 (312)
139 2x7v_A Probable endonuclease 4 21.4 3.1E+02 0.011 24.9 8.5 90 34-141 17-108 (287)
140 2ixd_A LMBE-related protein; h 21.1 4.9E+02 0.017 24.0 11.3 82 35-144 24-106 (242)
141 3tg1_B Dual specificity protei 21.0 1E+02 0.0035 26.3 4.7 29 18-46 93-130 (158)
142 3olq_A Universal stress protei 20.8 5E+02 0.017 24.0 11.7 23 124-146 255-277 (319)
143 3epw_A IAG-nucleoside hydrolas 20.6 1.6E+02 0.0056 28.9 6.6 61 17-87 12-81 (338)
144 1e2b_A Enzyme IIB-cellobiose; 20.1 98 0.0034 25.1 4.1 34 19-52 4-41 (106)
No 1
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=100.00 E-value=2.2e-84 Score=671.81 Aligned_cols=359 Identities=37% Similarity=0.672 Sum_probs=320.7
Q ss_pred CCCCCCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcch
Q 042717 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTD 92 (474)
Q Consensus 13 ~~~~~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~ 92 (474)
|...+++||+||||||+||+++|++|+++|++|+++||++|...+.. ..|++.++.++|+++|++|||||+++|+++
T Consensus 4 ~~~~~~~kVlVa~SGGvDSsv~a~lL~~~G~~V~~v~~~~~~~~~~~---~~c~~~~d~~~a~~va~~lGIp~~vv~~~~ 80 (376)
T 2hma_A 4 MSDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEN---GVCTATEDYKDVVAVADQIGIPYYSVNFEK 80 (376)
T ss_dssp -CCGGGSEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEECCCCCC-------CHHHHHHHHHHHHHHHHTCCEEEEECHH
T ss_pred hhhCCCCeEEEEEeCHHHHHHHHHHHHHcCCcEEEEEEECCCccccc---ccCCCHHHHHHHHHHHHHhCCcEEEEeChH
Confidence 33345679999999999999999999999999999999998642111 236677899999999999999999999999
Q ss_pred HHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccc
Q 042717 93 EYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQT 172 (474)
Q Consensus 93 ~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQs 172 (474)
+|++.|+++++++|..|+|||||+.||+.+||..|.++|+++|+++||||||+++... ......+.++.+..||||
T Consensus 81 ~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a~d~~~----~~~~~~l~rg~d~~kdqs 156 (376)
T 2hma_A 81 EYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYARVARD----EDGTVHMLRGVDNGKDQT 156 (376)
T ss_dssp HHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEEC----SSSCEEEEECSSTTTCCG
T ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcchhhhhC----CCchhhhhhccccccccc
Confidence 9999999999999999999999999999999999999999999999999999986320 112233567788899999
Q ss_pred ccccccChhhhccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccccccchHHHHHhhhccCCCcEEeccCCceeee
Q 042717 173 YFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252 (474)
Q Consensus 173 yfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl~~~~~~~fL~~~~~~~~G~ivd~~~g~~lG~ 252 (474)
|||+.+++.++.+++|||++++|+||+++|+++||+++++|+|+++||+++.+|++||+++++..||.++|. +|+++|+
T Consensus 157 yfL~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~gl~~~~k~~s~~~cf~~~~~~~~fL~~~~~~~pG~~vd~-~g~~~g~ 235 (376)
T 2hma_A 157 YFLSQLSQEQLQKTMFPLGHLEKPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTV-DGRDMGE 235 (376)
T ss_dssp GGGTTCCHHHHTTEECTTTTCCHHHHHHHHHHTTCTTTTCCCCCSCTTTTTSCHHHHHHTTSCCCCEEEEET-TCCEEEE
T ss_pred hhccCCChhhcCcEEecCcCCCHHHHHHHHHHcCCCcccCCCCCCccccCchhHHHHHHHHhhcCCCCEEcC-CCCEEEE
Confidence 999999998888999999999999999999999999999999999999999999999999988889999995 7999999
Q ss_pred ecceeeEeecccccCCCCC------ceEEEEEEecCCCeEEEecCCCCccceeeEEEEcceeeccCCCcccccceeeeec
Q 042717 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVR 326 (474)
Q Consensus 253 H~G~~~yTiGQR~Gl~i~~------~p~yVv~~d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~~~~~~~~~~~kiR 326 (474)
|.|+|+|||||||||++++ +||||+++|+++|+|+|+.+.+.+.++++.+.+.++||+...++..+.++.+|+|
T Consensus 236 H~g~~~yTiGQr~gl~i~~~~~~~~~p~~V~~~d~~~n~v~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~r 315 (376)
T 2hma_A 236 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTREMPEEFTLECTAKFR 315 (376)
T ss_dssp ESCGGGCCTTCBSCTTTTC----CCSCEEEEEEEGGGTEEEEEESTTCGGGEEEEEEEEEEEESSCCCSSEEEEEEEESS
T ss_pred ecCeeeeccCcccccCCCcccCCCCceEEEEEEecCCCEEEEEcCCChHHhccceEEeecceecCCCCCCCCeEEEEEEc
Confidence 9999999999999999975 6999999999999999998766678999999999999997655555678999999
Q ss_pred cCCCccceEEEEeeeecCCCCEEEEEecCCccCCCCCceEEEEeCCEEEEeeEEeeecc
Q 042717 327 HGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILESWD 385 (474)
Q Consensus 327 ~~~~~~~c~v~~~~~~~~~~~~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I~~~~~ 385 (474)
|++++.+|++... ++.++|+|++|++||||||+||||+||+|||||+|.+...
T Consensus 316 ~~~~~~~~~~~~~------~~~~~v~~~~~~~~v~pGQ~~v~Y~~~~~lggg~i~~~~~ 368 (376)
T 2hma_A 316 YRQPDSKVTVHVK------GEKTEVIFAEPQRAITPGQAVVFYDGEECLGGGLIDNAYR 368 (376)
T ss_dssp TTSCCEEEEEEEC------SSCEEEEEEEEEECCCTTSEEEEEETTEEEEEEEEEEEES
T ss_pred cCCCCCCEEEEEe------CCEEEEEeCCCCCCCCCCceEEEEeCCEEEeeEEEeeecC
Confidence 9999999998753 3478999999999999999999999999999999987644
No 2
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=100.00 E-value=3.1e-84 Score=671.21 Aligned_cols=359 Identities=38% Similarity=0.652 Sum_probs=302.6
Q ss_pred CCCCCCCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcc
Q 042717 12 SMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLT 91 (474)
Q Consensus 12 ~~~~~~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~ 91 (474)
+||. +++||+||||||+||+++|++|+++|++|+++||++|...+.. ..|++.++.++|+++|++||||++++|++
T Consensus 12 ~~~~-~~~kVvVa~SGGvDSsv~a~lL~~~G~~V~~v~~~~~~~~~~~---~~~~s~~d~~~a~~va~~LGIp~~vvd~~ 87 (380)
T 2der_A 12 SMSE-TAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGE---EYCTAAADLADAQAVCDKLGIELHTVNFA 87 (380)
T ss_dssp ------CCEEEEECCSCSTTHHHHHHHHTTCCEEEEEEEECCCCCSHH---HHHHHHHHHHHHHHHHHHHTCCEEEEECH
T ss_pred CCCC-CCCEEEEEEEChHHHHHHHHHHHHcCCeEEEEEEEcCcccccc---CCCCCHHHHHHHHHHHHHcCCcEEEEeCc
Confidence 4554 5689999999999999999999999999999999998642111 12456788999999999999999999999
Q ss_pred hHHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHH-cCCCEEEEceecccccCccCCCchhhHHhhhcCCccc
Q 042717 92 DEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISS-MEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKD 170 (474)
Q Consensus 92 ~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~-~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kD 170 (474)
++|++.|+++++++|..|+|||||+.||+.+||+.|.++|.+ +|+++||||||+++.. ......+.++.+..||
T Consensus 88 ~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~d~~-----~~~~~~l~rg~~~~kd 162 (380)
T 2der_A 88 AEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRAD-----VDGKSRLLRGLDSNKD 162 (380)
T ss_dssp HHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEEE-----ETTEEEEECCSSTTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEcccccccc-----ccchHHHhcccccccc
Confidence 999999999999999999999999999999999999999998 9999999999998532 0112235567788999
Q ss_pred ccccccccChhhhccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccccccchHHHHHhhhccCCCcEEeccCCcee
Q 042717 171 QTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFL 250 (474)
Q Consensus 171 QsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl~~~~~~~fL~~~~~~~~G~ivd~~~g~~l 250 (474)
|+|||+.++++++.+++|||++++|+||+++|+++||+++++|+|+++||+++++|++||+++++..||.++| .+|+++
T Consensus 163 qsy~L~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~Gl~~~~kp~s~~~cf~~~~~~~~fL~~~~~~~pG~~vd-~~g~~l 241 (380)
T 2der_A 163 QSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIIT-VDGDEI 241 (380)
T ss_dssp CGGGGSSCCHHHHHHEECCGGGSCHHHHHHHHHHTTCC----------------CHHHHHHTTSCCCCCEEEE-TTCCEE
T ss_pred cceeecCCChhhcceeEccCCCCCHHHHHHHHHHcCCCCccCCCCCCccccCchHHHHHHHHhhhhCCCCEEe-eCCcEE
Confidence 9999999998887899999999999999999999999999999999999999999999999998888999999 589999
Q ss_pred eeecceeeEeecccccCCCCC------ceEEEEEEecCCCeEEEecCCCCccceeeEEEEcceeeccCCCcccccceeee
Q 042717 251 GKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCK 324 (474)
Q Consensus 251 G~H~G~~~yTiGQR~Gl~i~~------~p~yVv~~d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~~~~~~~~~~~k 324 (474)
|+|.|+|+|||||||||+|++ +||||+++|+++|+|+|+++.+.+.|+++.+.+.++||+...++..+.++.+|
T Consensus 242 g~H~g~~~yTiGQr~gl~i~~~~~~~~~p~~V~~~d~~~n~v~v~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~k 321 (380)
T 2der_A 242 GEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVDREPFTGTMRCTVK 321 (380)
T ss_dssp EECSCSTTCCTTCCTTSCCCCCSSSTTCCEEEEEEETTTTEEEEEESTTCTTTCEEEEEEEEEEETTCCCCCSEEEEEEE
T ss_pred EEecCceeeeecccccCCcCcccCCCCccEEEEEEecCCCEEEEECCCChHHhccCEEEEeccEECCCCCCCCceEEEEE
Confidence 999999999999999999874 69999999999999999987666788999999999999976555556789999
Q ss_pred eccCCCccceEEEEeeeecCCCCEEEEEecCCccCCCCCceEEEEeCCEEEEeeEEeeecc
Q 042717 325 VRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILESWD 385 (474)
Q Consensus 325 iR~~~~~~~c~v~~~~~~~~~~~~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I~~~~~ 385 (474)
+||++++.+|+++.. +++.++|+|++||+||||||+||||+||+|||||+|.+.+.
T Consensus 322 ~r~~~~~~~~~~~~~-----~~~~~~v~~~~p~~~v~pGQ~~v~Y~~~~~lggg~i~~~~~ 377 (380)
T 2der_A 322 TRYRQTDIPCTVKAL-----DDDRIEVIFDEPVAAVTPGQSAVFYNGEVCLGGGIIEQRLP 377 (380)
T ss_dssp SSTTCCCEEEEEECC-----SSSCEEEEEEEEESCCCTTSEEEEEETTEEEEEEEEEEEEE
T ss_pred EccCCCCccEEEEEe-----cCCEEEEEECCCCcCcCCCceEEEEeCCEEEEEEEEecccc
Confidence 999999999999754 35579999999999999999999999999999999986543
No 3
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=99.94 E-value=5.4e-28 Score=251.38 Aligned_cols=182 Identities=19% Similarity=0.190 Sum_probs=141.6
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCC-CEEEEEcchHHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDV-PLEVVHLTDEYW 95 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGI-pl~vvd~~~~f~ 95 (474)
..+||+||||||+|||++|++|+++|++|+++++++|+. +|++.|+++|+++|| +|+++|++++|+
T Consensus 13 ~~~KVVVA~SGGlDSSv~a~~Lke~G~eViavt~d~Gq~-------------~Ele~A~~vA~~lGi~~~~VvDl~eef~ 79 (421)
T 1vl2_A 13 MKEKVVLAYSGGLDTSVILKWLCEKGFDVIAYVANVGQK-------------DDFVAIKEKALKTGASKVYVEDLRREFV 79 (421)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEESSCC-------------CCHHHHHHHHHHHTCSEEEEEECHHHHH
T ss_pred ccCCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEEEcCCH-------------HHHHHHHHHHHHcCCceEEEEecHHHHH
Confidence 457899999999999999999999999999999998741 468999999999999 999999999999
Q ss_pred HhhHhhhHHH--HhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccc
Q 042717 96 KNVVSYIIEE--YRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTY 173 (474)
Q Consensus 96 ~~V~~~~i~~--y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsy 173 (474)
++++.+++.. +-.|..|++.+.|+..+ +..+.++|++.||++||||||+.. .|+ ..+ . .+
T Consensus 80 ~~v~~p~i~~na~yeg~Y~~g~~l~Rp~i-~~~l~~~A~~~Gad~IA~G~~~kg-----nDq-~rf--~---------~~ 141 (421)
T 1vl2_A 80 TDYIFTALLGNAMYEGRYLLGTAIARPLI-AKRQVEIAEKEGAQYVAHGATGKG-----NDQ-VRF--E---------LT 141 (421)
T ss_dssp HHTHHHHHTTTCCBTTTBCCHHHHHHHHH-HHHHHHHHHHHTCSEEECCCCTTS-----SHH-HHH--H---------HH
T ss_pred HhhhhHHHhcCCcccCceeCCCcccHHHH-HHHHHHHHHHcCCCEEEECCeeCC-----CCh-HHH--H---------HH
Confidence 9888887764 22466788888887755 899999999999999999999841 011 111 1 11
Q ss_pred cccccChhhhccccccccC-------CCHHHHHHHHHHcCCCCcC---CCCCcccccccccchHHHHHh
Q 042717 174 FLSHLSQAQLKRLIFPLGC-------ISKEEVRKFATQFDLPNKD---RKDSQGICFLGKIKFSEFVAR 232 (474)
Q Consensus 174 fL~~L~~~~L~~~i~PL~~-------ltK~EVr~lA~~~GLp~~~---k~~S~diCFl~~~~~~~fL~~ 232 (474)
+ ..+.++ .++++||++ ++|+||+++|+++|||+.. +|.|+|+||++...-...|++
T Consensus 142 ~-~al~p~--~~IiaPl~d~~~l~~~lsK~Eir~~A~e~Glp~~~t~~kp~S~d~nl~~~s~E~g~led 207 (421)
T 1vl2_A 142 Y-AALNPN--LKVISPWKDPEFLAKFKGRTDLINYAMEKGIPIKVSKKRPYSEDENLMHISHEAGKLED 207 (421)
T ss_dssp H-HHHCTT--SEEECGGGCHHHHHHTC--CHHHHHHHHHTCCCCSSCCCSSEEEECSSCEEEESGGGGS
T ss_pred H-HhcCCC--CeEEcccCchhhccccCCHHHHHHHHHHcCCCcccCCCCCCcCCCCeecccccccccCC
Confidence 1 111211 379999999 7999999999999999864 789999999975433334444
No 4
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=1.8e-27 Score=226.02 Aligned_cols=190 Identities=16% Similarity=0.157 Sum_probs=137.2
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhh
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNV 98 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V 98 (474)
+||+|++|||+||++++++|++.|++|.++|++++.. . +++.++++|+.+|||+++++++..|+..+
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~~g~~v~~~~v~~~~~-----------~--~~~~~~~~a~~lgi~~~~~~~~~~~~~~~ 73 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKKLGYNPHLITINFGVI-----------P--SYKLAEETAKILGFKHKVITLDRKIVEKA 73 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTTEEEEEEEEECSSS-----------C--TTHHHHHHHHHHTCEEEEEECCTHHHHHH
T ss_pred CeEEEEEECcHHHHHHHHHHHHcCCCeEEEEEeCCCc-----------h--HHHHHHHHHHHhCCCEEEEECCHHHHHHH
Confidence 6899999999999999999999999999999998642 1 67899999999999999999998887777
Q ss_pred HhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccccccc
Q 042717 99 VSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHL 178 (474)
Q Consensus 99 ~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L 178 (474)
++.+.. .+.++++|..| +..+|.++|+ |+++|+|||++++ ..+|..+. .+..+
T Consensus 74 ~~~~~~---~~~~~~~c~~~----~~~~l~~~A~--g~~~i~tGh~~dD-------~~et~~~~-----------gl~~~ 126 (203)
T 3k32_A 74 ADMIIE---HKYPGPAIQYV----HKTVLEILAD--EYSILADGTRRDD-------RVPKLSYS-----------EIQSL 126 (203)
T ss_dssp HHHHHH---HSSSHHHHHHH----HHHHHHHHTT--TCSEEECCCCTTC-------CSSCCCHH-----------HHHHH
T ss_pred HHHHHh---cCCCccHHHHH----HHHHHHHHhc--CCCEEEECCCccc-------chhhcchh-----------hccCc
Confidence 665443 34344455544 3345555665 9999999999984 34442110 01222
Q ss_pred ChhhhccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccccccchHHHHHhhhccC---CCcEE--eccCCceeeee
Q 042717 179 SQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEM---EGVIL--EAETGDFLGKH 253 (474)
Q Consensus 179 ~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl~~~~~~~fL~~~~~~~---~G~iv--d~~~g~~lG~H 253 (474)
....-..+++||.+++|+||+++|+++ |++.++|+|++ ++.+|+.+|+.++..+ ++.++ + ..|+++|+|
T Consensus 127 ~~~~~~~iirPLl~~~k~eI~~~a~~~-l~~~~~~sn~~----~~~dy~~~~r~~l~~~~~~~~~~~p~~-~~~~v~g~~ 200 (203)
T 3k32_A 127 EMRKNIQYITPLMGFGYKTLRHLASEF-FILEEIKSGTK----LSSDYEAEIRHILKERGESPEKYFPEH-KQTRVVGLK 200 (203)
T ss_dssp HHHHTCEEECGGGGCCHHHHHHHHHHH-EEEEEECC----------CTHHHHHHHHHHHTCCGGGTSCC--CEEEEEEES
T ss_pred ccccCCeEEeccCCCCHHHHHHHHHHh-CCcccCCCCCC----CCCcHHHHHHHHHhhcCCCCcccCCcc-ccceeeeee
Confidence 221113689999999999999999999 99998988863 4667877777666433 34444 6 479999999
Q ss_pred c
Q 042717 254 W 254 (474)
Q Consensus 254 ~ 254 (474)
+
T Consensus 201 ~ 201 (203)
T 3k32_A 201 K 201 (203)
T ss_dssp S
T ss_pred c
Confidence 4
No 5
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=99.92 E-value=3.7e-25 Score=223.54 Aligned_cols=173 Identities=16% Similarity=0.186 Sum_probs=139.8
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHc----CCc-EEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcc
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSA----GHS-CTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLT 91 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~----G~e-V~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~ 91 (474)
.+++|+||+|||+||++++++|++. |++ |.++|++++.. +.+..+.+.++++|+++|||+++++++
T Consensus 23 ~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r---------~~s~~~~~~v~~~a~~lgi~~~v~~~~ 93 (317)
T 1wy5_A 23 GERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLR---------ESAERDEEFCKEFAKERNMKIFVGKED 93 (317)
T ss_dssp SCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSS---------THHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCC---------cccHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 4579999999999999999999986 789 99999998643 125688999999999999999999987
Q ss_pred hHHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccc
Q 042717 92 DEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQ 171 (474)
Q Consensus 92 ~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQ 171 (474)
... +.+. ..+++|.. .+.+||..|.++|++.|+++|+||||++ |..++++++..++.+..
T Consensus 94 ~~~-------~~~~----~~~~~e~~-ar~~Ry~~l~~~a~~~g~~~i~~Gh~~d-------D~~Et~l~~l~rg~g~~- 153 (317)
T 1wy5_A 94 VRA-------FAKE----NRMSLEEA-GRFLRYKFLKEILESEGFDCIATAHHLN-------DLLETSLLFFTRGTGLD- 153 (317)
T ss_dssp HHH-------HHHH----TTCCHHHH-HHHHHHHHHHHHHHHTTCSEEECCCCHH-------HHHHHHHHHHHHCCCHH-
T ss_pred chh-------hhcc----CCCCHHHH-HHHHHHHHHHHHHHHcCCCEEEEeCchh-------HHHHHHHHHHHhCCCcc-
Confidence 321 1122 12577864 4568999999999999999999999997 45688888777665421
Q ss_pred cccccccChhhhccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccc
Q 042717 172 TYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFL 221 (474)
Q Consensus 172 syfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl 221 (474)
.|.++.+.. ..+++||.+++|+||++|++++|+|+.++++|++.||.
T Consensus 154 --gl~~~~~~~-~~iirPLl~~~k~eI~~~~~~~gl~~~~d~sn~~~~~~ 200 (317)
T 1wy5_A 154 --GLIGFLPKE-EVIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYEVSIP 200 (317)
T ss_dssp --HHHCSCSEE-TTEECTTTTCCHHHHHHHHHHTTCCCCCCGGGGTCCHH
T ss_pred --cccCCCCCC-CeEECCCccCCHHHHHHHHHHcCCCeeECCCCCCCccH
Confidence 255554432 27999999999999999999999999999999988885
No 6
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=99.92 E-value=3.1e-25 Score=235.16 Aligned_cols=183 Identities=17% Similarity=0.240 Sum_probs=147.1
Q ss_pred ccccCCCCCCCCeEEEEEccchhHHHHHHHHHH----cCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCC
Q 042717 8 YLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHS----AGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDV 83 (474)
Q Consensus 8 ~l~~~~~~~~~~kVlValSGGvDSsvaa~LLke----~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGI 83 (474)
+.+..|.. .+++|+||+|||+||+++|++|++ .|++|.++|++++.. ++.++.+.+.++++|+++||
T Consensus 9 i~~~~l~~-~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglr--------g~~s~~~~~~v~~~~~~lgi 79 (464)
T 3a2k_A 9 IHRHQLLS-EGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFR--------GRESEEEMEFVKRFCVERRI 79 (464)
T ss_dssp HHHTCSSS-CSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTC--------THHHHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCC-CCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCC--------ccccHHHHHHHHHHHHHcCC
Confidence 33444433 457899999999999999999988 699999999998753 11246789999999999999
Q ss_pred CEEEEEcchHHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhh
Q 042717 84 PLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLEL 163 (474)
Q Consensus 84 pl~vvd~~~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~ 163 (474)
|+++++++.. .|.....+++|..|. .+||.+|.++|++.|+++|+||||++ |..+|++++.
T Consensus 80 ~~~v~~~~~~-----------~~~~~~~~~~e~~aR-~~Ry~~l~~~a~~~g~~~IatgH~~d-------D~aEt~L~~l 140 (464)
T 3a2k_A 80 LCETAQIDVP-----------AFQRSAGLGAQEAAR-ICRYRFFAELMEKHQAGYVAVGHHGD-------DQVETILMRL 140 (464)
T ss_dssp EEEEEECCCH-----------HHHTTTTCCSHHHHH-HHHHHHHHHHHHTTTCCEEECCCCHH-------HHHHHHHHHH
T ss_pred cEEEEEechh-----------hhhhccCCCHHHHHH-HHHHHHHHHHHHHcCcCEEEEeCChH-------HHHHHHHHHH
Confidence 9999998631 222334578999995 48999999999999999999999998 4578888887
Q ss_pred hcCCcccccccccccChhh---hccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccc
Q 042717 164 SKDKVKDQTYFLSHLSQAQ---LKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFL 221 (474)
Q Consensus 164 ~~d~~kDQsyfL~~L~~~~---L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl 221 (474)
.++.+.. .|+++.+.. -..+++||.+++|+||++||+++|+|+.++++|++.||.
T Consensus 141 ~rG~g~~---gL~gm~~~~~~~~~~iiRPLl~~~k~eI~~ya~~~gl~~~~d~sn~~~~~~ 198 (464)
T 3a2k_A 141 VRGSTSK---GYAGIPVKRPFHGGYLIRPFLAVSRAEIEAYCRQMGLSPRCDPSNEKDDYT 198 (464)
T ss_dssp HHCCCSS---STTCSCSEEECSSSEEECGGGGSCHHHHHHHHHHTCCSSCSCTTCCCTTSH
T ss_pred HcCCCcc---cccCCCccccCCCCEEECCCccCcHHHHHHHHHHcCCCeEECCCCCCccch
Confidence 7765432 255554432 137899999999999999999999999999999998885
No 7
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=99.91 E-value=5.2e-25 Score=229.13 Aligned_cols=213 Identities=19% Similarity=0.219 Sum_probs=157.0
Q ss_pred CeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCC-CEEEEEcchHHHH
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDV-PLEVVHLTDEYWK 96 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGI-pl~vvd~~~~f~~ 96 (474)
+||+||+|||+||++++++|+++ |++|+++|++++. .++.+.++++|+++|+ ++++++++++|.+
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~~g~~V~av~vd~g~-------------~~e~e~a~~~A~~lGi~~~~vvd~~~ef~~ 67 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQ-------------GEEVEEAREKALRTGASKAIALDLKEEFVR 67 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHTCEEEEEEEESSC-------------SSCHHHHHHHHHHHTCSEEEEEECHHHHHH
T ss_pred CcEEEEEeChHHHHHHHHHHHHhhCCcEEEEEEeCCC-------------HHHHHHHHHHHHHhCCCeEEEEeCcHHHHH
Confidence 47999999999999999999998 9999999999864 1458999999999999 7999999988887
Q ss_pred hhHhhhHHHHhcCCCCCcccc-----cchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccc
Q 042717 97 NVVSYIIEEYRCGRTPNPDVL-----CNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQ 171 (474)
Q Consensus 97 ~V~~~~i~~y~~G~tpNPci~-----Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQ 171 (474)
.+..+.+.. +..++.|.. |+. +++..|.++|++.|+++|+|||+++.. |+.+ + ..+
T Consensus 68 ~~~~~~i~~---~~~~e~~y~~g~~~~R~-~~~~~L~~~A~~~G~~~IatG~~~d~n-----Dq~~-f--~~g------- 128 (400)
T 1kor_A 68 DFVFPMMRA---GAVYEGYYLLGTSIARP-LIAKHLVRIAEEEGAEAIAHGATGKGN-----DQVR-F--ELT------- 128 (400)
T ss_dssp HTHHHHHHT---TCCBTTTBCCTTTTHHH-HHHHHHHHHHHHHTCSEEECCCCTTSS-----HHHH-H--HHH-------
T ss_pred HhhHHHHHc---CCccccccccCCccchH-HHHHHHHHHHHHcCCCEEEECCCCCcc-----cHHH-H--HHH-------
Confidence 665544442 222334433 544 447889999999999999999998510 1111 1 110
Q ss_pred cccccccChhhhccccccccCC---CHHHHHHHHHHcCCCCcC---CCCCcccccccccchHHHHHhhhcc---------
Q 042717 172 TYFLSHLSQAQLKRLIFPLGCI---SKEEVRKFATQFDLPNKD---RKDSQGICFLGKIKFSEFVARHIGE--------- 236 (474)
Q Consensus 172 syfL~~L~~~~L~~~i~PL~~l---tK~EVr~lA~~~GLp~~~---k~~S~diCFl~~~~~~~fL~~~~~~--------- 236 (474)
+..+.++ .++++||.++ +|+||++||+++|+|+.. +|.|.|.|+++...-+.+|++....
T Consensus 129 ---~~~l~p~--l~ii~PL~~~~~~tK~eI~~ya~~~gip~~~~~~~pys~d~nllg~s~e~~~Led~~~~~p~~~~~~~ 203 (400)
T 1kor_A 129 ---AYALKPD--IKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEKPYSMDANLLHISYEGGVLEDPWAEPPKGMFRMT 203 (400)
T ss_dssp ---HHHHCTT--CEEECGGGTCCCCSHHHHHHHHHHTTCCCC-----CCEEEECSSCEEEESGGGGCTTSCCCTTCCSSS
T ss_pred ---HHhcCCC--CEEEEeecccccCCHHHHHHHHHHcCCCcccCCCCCCcCcchhcccchhhhHHHhHHhcCCcccceee
Confidence 1222222 2689999999 999999999999999864 5678889998654333444442211
Q ss_pred -----------------CCCcEEeccCCceeeeeccee-eEeecccccCCC
Q 042717 237 -----------------MEGVILEAETGDFLGKHWGFW-FYTIGQRQGLRL 269 (474)
Q Consensus 237 -----------------~~G~ivd~~~g~~lG~H~G~~-~yTiGQR~Gl~i 269 (474)
..|..+. .+|+.++.|..+. .+++|+|+|+|.
T Consensus 204 ~~p~~~~~~~~~~~i~f~~g~~v~-~~g~~~~~~~li~~ln~~~~~~GiGr 253 (400)
T 1kor_A 204 QDPEEAPDAPEYVEVEFFEGDPVA-VNGERLSPAALLQRLNEIGGRHGVGR 253 (400)
T ss_dssp CCGGGSCSSCEEEEEEEETTEEEE-ETTEECCHHHHHHHHHHHHHHTTCCE
T ss_pred cChhHCCCCceEEEEEeecCceEe-ccCccCCHHHHHHHHHHHHHhcCCCh
Confidence 2355666 4788899998888 599999999984
No 8
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=99.90 E-value=2.7e-24 Score=210.54 Aligned_cols=167 Identities=19% Similarity=0.190 Sum_probs=127.9
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWK 96 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~ 96 (474)
+.++|+|++|||+||+++|+++++++.++++++|+++. .+..+.++|+++|+.|||+|+++++++.|+.
T Consensus 28 ~~~~vvv~lSGGiDSsv~a~l~~~~~~~~~av~~~~~~-----------~~~~~~~~a~~~a~~lgi~~~~v~~~~~~~~ 96 (249)
T 3fiu_A 28 PAEGFVIGLSGGIDSAVAASLAVKTGLPTTALILPSDN-----------NQHQDMQDALELIEMLNIEHYTISIQPAYEA 96 (249)
T ss_dssp TCSEEEEECCSSHHHHHHHHHHHHTTSCEEEEECCCTT-----------SCHHHHHHHHHHHHHHTCEEEECCCHHHHHH
T ss_pred CCCCEEEEecCcHHHHHHHHHHHHhCCCCEEEEecCCC-----------CCHHHHHHHHHHHHHhCCCEEEEEChHHHHH
Confidence 45789999999999999999999998888899998653 1467899999999999999999999877654
Q ss_pred hhHhhhHHHHhcCCCCCcccccc--hHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccc
Q 042717 97 NVVSYIIEEYRCGRTPNPDVLCN--TRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYF 174 (474)
Q Consensus 97 ~V~~~~i~~y~~G~tpNPci~Cn--r~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyf 174 (474)
. ++.+.+.+..+.++++|..|| +++|+..++.+|.+.|+..++|||+... . .+ |+
T Consensus 97 ~-~~~~~~~~~~~~~~~~~~~~Ni~~r~R~~~l~~~A~~~g~~vl~TGn~sE~-----------~---~G--------~~ 153 (249)
T 3fiu_A 97 F-LASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQYNRIVIGTDNACEW-----------Y---MG--------YF 153 (249)
T ss_dssp H-HHHTGGGC------CHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCCHHHH-----------H---HT--------CS
T ss_pred H-HHHHHhhccCCCCcChhHHHHHHHHHHHHHHHHHHHHcCCEEEECCCHHHH-----------h---cC--------ch
Confidence 2 211111111245666666778 7789999999999999999999987431 1 01 11
Q ss_pred ccccChhhhccccccccCCCHHHHHHHHHHcCCC--CcCCCCCccccc
Q 042717 175 LSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLP--NKDRKDSQGICF 220 (474)
Q Consensus 175 L~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp--~~~k~~S~diCF 220 (474)
. ........++||++++|.||+++|+.+|+| .+++|+|+++||
T Consensus 154 t---~~gd~~~~i~PL~~l~K~eVr~lA~~lglp~~i~~k~psa~L~~ 198 (249)
T 3fiu_A 154 T---KFGDGAADILPLVNLKKSQVFELGKYLDVPKNILDKAPSAGLWQ 198 (249)
T ss_dssp C---TTTTTCCSBCTTTTCCHHHHHHHHHHTTCCHHHHHSCCCCCSST
T ss_pred h---ccCCCCcceeecccCcHHHHHHHHHHcCCcHHHccCCCCCccCC
Confidence 1 011224689999999999999999999999 889999999999
No 9
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=99.90 E-value=6.6e-24 Score=223.16 Aligned_cols=168 Identities=21% Similarity=0.265 Sum_probs=139.1
Q ss_pred CCCeEEEEEccchhHHHHHHHHHH-----cCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcc
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHS-----AGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLT 91 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke-----~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~ 91 (474)
.+++|+||+|||+||++++++|++ .|++|.++|++++..+ .++.+.+.++++|+++|||++++++.
T Consensus 12 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~---------~s~~~~~~v~~~~~~lgi~~~v~~~~ 82 (433)
T 1ni5_A 12 TSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSA---------NADAWVTHCENVCQQWQVPLVVERVQ 82 (433)
T ss_dssp TCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCS---------SHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred CCCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCc---------ccHHHHHHHHHHHHHcCCcEEEEEec
Confidence 357899999999999999999998 6899999999987532 25678999999999999999999986
Q ss_pred hHHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccc
Q 042717 92 DEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQ 171 (474)
Q Consensus 92 ~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQ 171 (474)
.. ...+++|..|. .+||.+|.++|. ++++|+||||++ |..++++++..++.+..
T Consensus 83 ~~---------------~~~~~~e~~aR-~~Ry~~l~~~a~--~~~~i~tgH~~d-------D~aEt~L~~l~RG~g~~- 136 (433)
T 1ni5_A 83 LA---------------QEGLGIEAQAR-QARYQAFARTLL--PGEVLVTAQHLD-------DQCETFLLALKRGSGPA- 136 (433)
T ss_dssp CC---------------CSSSTTTTHHH-HHHHHHHHHTCC--TTEEEECCCCHH-------HHHHHHHHHHTTTCCTT-
T ss_pred CC---------------CCCCCHHHHHH-HHHHHHHHHHHh--hCCeEEeeccch-------HHHHHHHHHHHcCCCcc-
Confidence 31 11357898884 589999988886 499999999998 46788888887776532
Q ss_pred cccccccChhh---hccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccc
Q 042717 172 TYFLSHLSQAQ---LKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFL 221 (474)
Q Consensus 172 syfL~~L~~~~---L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl 221 (474)
+|+++.+.. ...+++||.+++|+||++||+++|+|+.++++|++.||.
T Consensus 137 --gL~gm~~~~~~~~~~iiRPLl~~~k~eI~~y~~~~gl~~~~D~sn~~~~~~ 187 (433)
T 1ni5_A 137 --GLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQYDLRWIEDESNQDDSYD 187 (433)
T ss_dssp --GGGCCCSEEEETTEEEECGGGSCCHHHHHHHHHHTTCCCBCCCCGGGTTSH
T ss_pred --cccCCCCccccCCceEEccCccCCHHHHHHHHHHcCCCeEECCCCCCcccc
Confidence 356665432 247999999999999999999999999999999999885
No 10
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=99.90 E-value=1.1e-23 Score=221.24 Aligned_cols=183 Identities=16% Similarity=0.117 Sum_probs=136.3
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCC-CEEEEEcchHHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDV-PLEVVHLTDEYW 95 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGI-pl~vvd~~~~f~ 95 (474)
+++||+||+|||+||+++|++|+++|++|+++|++++.. +.+|++.|+++|+++|| +++++|++++|.
T Consensus 9 ~~~KVvVA~SGGlDSSvll~~L~e~G~eViavtvd~Gq~-----------~~~ele~a~~~A~~lGi~~~~vvD~~eef~ 77 (455)
T 1k92_A 9 VGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQP-----------DEEDYDAIPRRAMEYGAENARLIDCRKQLV 77 (455)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEECCCT-----------TCSCTTHHHHHHHHHTCSEEEEEECHHHHH
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHcCCEEEEEEEEcCCC-----------CHHHHHHHHHHHHHhCCCeEEEEeChHHHH
Confidence 357999999999999999999999999999999998742 13568899999999999 899999999998
Q ss_pred HhhHhhhHHH---Hh-cCC--CCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcc
Q 042717 96 KNVVSYIIEE---YR-CGR--TPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVK 169 (474)
Q Consensus 96 ~~V~~~~i~~---y~-~G~--tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~k 169 (474)
++++ +++.. |. .|+ .++.+..|+ .+.+..|.++|++.|+++|||||++.. +|+. . +..
T Consensus 78 ~~v~-p~i~~na~y~~eg~rcY~l~t~~aR-p~i~~~l~e~A~e~Gad~IAtGht~kg-----nDq~-r--f~~------ 141 (455)
T 1k92_A 78 AEGI-AAIQCGAFHNTTGGLTYFNTTPLGR-AVTGTMLVAAMKEDGVNIWGDGSTYKG-----NDIE-R--FYR------ 141 (455)
T ss_dssp HHHH-HHHHHTCCCCEETTEECCCHHHHHH-HHHHHHHHHHHHHTTCCEEECCCCTTS-----SHHH-H--HHH------
T ss_pred HHhH-HHHHcCCcccccCceecccCCcchH-HHHHHHHHHHHHHcCCCEEEECCcCCC-----CCHH-H--HHH------
Confidence 7755 55554 31 344 444444443 356899999999999999999998531 1111 1 111
Q ss_pred cccccccccChhhhccccccccC-------CCHHHHHHHHHHcCCCCcC---CCCCcccccccccchHHHHHh
Q 042717 170 DQTYFLSHLSQAQLKRLIFPLGC-------ISKEEVRKFATQFDLPNKD---RKDSQGICFLGKIKFSEFVAR 232 (474)
Q Consensus 170 DQsyfL~~L~~~~L~~~i~PL~~-------ltK~EVr~lA~~~GLp~~~---k~~S~diCFl~~~~~~~fL~~ 232 (474)
++. .+.+ . .++++|+.+ ++|+||++||+++|||+.. +|.|+|.|+++..--...|++
T Consensus 142 ---~~~-al~p-~-l~viaPlr~~~ll~~~lsK~EI~~yA~~~GIp~~~t~~~pyS~d~nl~g~s~e~g~led 208 (455)
T 1k92_A 142 ---YGL-LTNA-E-LQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEY 208 (455)
T ss_dssp ---HHH-HHCT-T-CEEECGGGCHHHHHHSSSHHHHHHHHHHTTCCCCCCCCCSSEEEEETTEEEEESGGGGS
T ss_pred ---HHH-hcCC-C-CEEECeeccccccccCCCHHHHHHHHHHcCCCcccCCCCCCccCCceEEEEeecccccC
Confidence 111 1221 2 378999987 8999999999999999864 567999999975433333443
No 11
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=99.89 E-value=7e-23 Score=197.39 Aligned_cols=169 Identities=14% Similarity=0.138 Sum_probs=118.7
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCC-EEEEEcc--hHHH
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP-LEVVHLT--DEYW 95 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIp-l~vvd~~--~~f~ 95 (474)
+||+|++|||+||+++|++|+++|++|+++|++++.. +..+++.++++|+++||+ |++++++ .+|.
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~~~~v~av~~~~g~~-----------~~~e~~~a~~~a~~lgi~~~~vi~~~~l~~~~ 71 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQDYDDVHCITFDYGQR-----------HRAEIEVAQELSQKLGAAAHKVLDVGLLNELA 71 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHCSEEEEEEEESSSS-----------CHHHHHHHHHHHHHHTCSEEEEEECTHHHHTS
T ss_pred CCEEEEecCcHHHHHHHHHHHHcCCCEEEEEEECCCC-----------CHHHHHHHHHHHHHhCCCceEEEeChhHHHHh
Confidence 5899999999999999999999999999999998642 247899999999999999 9999998 5565
Q ss_pred HhhHhhh---H--HHHhcCCCCCcccccchHHHHHHH-HHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcc
Q 042717 96 KNVVSYI---I--EEYRCGRTPNPDVLCNTRIKFGAF-MDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVK 169 (474)
Q Consensus 96 ~~V~~~~---i--~~y~~G~tpNPci~Cnr~iKf~~l-~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~k 169 (474)
..++... + ..|..+.+|++|+.|++.+ |..+ .++|++.|+++|+|||++++...+.+. ...++. +.+...
T Consensus 72 ~~~l~~~~~~v~~~~~~~~~~~~~~~~~R~~~-~~~la~~~A~~~g~~~I~~G~~~~D~~~~~~~--r~~~~~-~~~~~~ 147 (232)
T 2pg3_A 72 TSSLTRDSIPVPDYDANAQGIPNTFVPGRNIL-FLTLASIYAYQVGAEAVITGVCETDFSGYPDC--RDEFVK-ALNQAI 147 (232)
T ss_dssp HHHHHHTTCCCCC---------CCCCTTHHHH-HHHHHHHHHHHHTCSEEECCCCSCSSSCCGGG--SHHHHH-HHHHHH
T ss_pred hhhcccccccccccccccCCCCCCeEechHHH-HHHHHHHHHHHcCcCEEEEccCccccCCCCCC--CHHHHH-HHHHHH
Confidence 5544321 1 1244577899999998855 5444 789999999999999999853222111 111111 100000
Q ss_pred cccccccccChhhhccccccccCCCHHHHHHHHHHcCC-CC
Q 042717 170 DQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDL-PN 209 (474)
Q Consensus 170 DQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GL-p~ 209 (474)
+++ ...-.++++||.+++|.||+++|+++|+ |+
T Consensus 148 ~~~-------~~~~~~i~~PL~~~~K~ei~~~a~~~gl~~~ 181 (232)
T 2pg3_A 148 VLG-------IARDIRFETPLMWLNKAETWALADYYQQLDT 181 (232)
T ss_dssp HHH-------HTSCCEEECTTTTCCHHHHHHHHHHTTCHHH
T ss_pred HHh-------CCCCeEEEEecCCCCHHHHHHHHHHcCCCcc
Confidence 000 0011478999999999999999999999 63
No 12
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=99.89 E-value=2.3e-23 Score=203.98 Aligned_cols=160 Identities=16% Similarity=0.212 Sum_probs=120.7
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~ 95 (474)
+.++|+|++|||+||+++++++++. |++|++++|+++.. +..+.++|+++|+.|||+|+++++++.+.
T Consensus 25 g~~~vvv~lSGGiDSsv~a~l~~~~~g~~v~av~~~~~~~-----------~~~~~~~a~~~a~~lgi~~~~v~i~~~~~ 93 (249)
T 3p52_A 25 QSQGVVLGLSGGIDSALVATLCKRALKENVFALLMPTQIS-----------NKANLEDALRLCADLNLEYKIIEIQSILD 93 (249)
T ss_dssp SCSEEEEECCSSHHHHHHHHHHHHHHTTSEEEEECCSCCS-----------SCHHHHHHHHHHHHHTCEEEECCCHHHHH
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEEecCCCC-----------CHHHHHHHHHHHHHhCCCEEEEECcHHHH
Confidence 3578999999999999999999997 99999999987531 35778999999999999999999975432
Q ss_pred HhhHhhhHHHHhcCCCCCcccccc--hHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccc
Q 042717 96 KNVVSYIIEEYRCGRTPNPDVLCN--TRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTY 173 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tpNPci~Cn--r~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsy 173 (474)
. +.. ...++|++..|| +++|+..++++|.+.|+..++|||+.+. .
T Consensus 94 ~-----~~~---~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tgn~se~-----------~-------------- 140 (249)
T 3p52_A 94 A-----FIK---QSENTTLVSLGNFAARIRMSLLYDYSALKNSLVIGTSNKSEL-----------L-------------- 140 (249)
T ss_dssp H-----HHT---TCSCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCHHHH-----------H--------------
T ss_pred H-----HHH---hccccCCccHhHHHHHHHHHHHHHHHHHCCCeEEeCCCHHHH-----------H--------------
Confidence 1 122 233578877777 6689999999999999999999987431 1
Q ss_pred cccccChhhhccccccccCCCHHHHHHHHHHcCCC--CcCCCCCccccc
Q 042717 174 FLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLP--NKDRKDSQGICF 220 (474)
Q Consensus 174 fL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp--~~~k~~S~diCF 220 (474)
+++.+........++||++++|.||+++|+.+|+| ++++|+|+++|+
T Consensus 141 ~g~~t~~gd~~~~i~PL~~l~K~eV~~la~~~gip~~i~~k~psa~L~~ 189 (249)
T 3p52_A 141 LGYGTIYGDLACAFNPIGSLYKSEIYALAKYLNLHENFIKKAPSADLWE 189 (249)
T ss_dssp HTCSCTTTTTCCSEETTTTSCHHHHHHHHHHTTCCHHHHHC--------
T ss_pred ccchhhhccccCccccccCCcHHHHHHHHHHcCCcHHhcCCCCCcccCC
Confidence 11112222334689999999999999999999999 788999998876
No 13
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=99.89 E-value=6.8e-23 Score=194.54 Aligned_cols=167 Identities=15% Similarity=0.115 Sum_probs=112.3
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHH--
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYW-- 95 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~-- 95 (474)
+++|+|++|||+||++++++|+++|++|+++|++++.. ...+.+.++++|+++|||+++++++....
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~~~~v~~~~~~~~~~-----------~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~ 71 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKEFEEVETVTFHYNQR-----------HSQEVEVAKSIAEKLGVKNHLLDMSLLNQLA 71 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHCSEEEEEEEESSCT-----------TCHHHHHHHHHHHTTCCCEEEEECGGGGGGS
T ss_pred CCCEEEEccCcHHHHHHHHHHHHcCCceEEEEEeCCCC-----------CHHHHHHHHHHHHHhCCCeEEEeChHHhhhc
Confidence 46899999999999999999999999999999998642 13678999999999999999999875211
Q ss_pred -HhhHhh-hHHHHhcCCCCCcccccchHHHH-HHHHHHHHHcCCCEEEEceecccccCccCCCchhh--HHhhhcCCccc
Q 042717 96 -KNVVSY-IIEEYRCGRTPNPDVLCNTRIKF-GAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPS--VLELSKDKVKD 170 (474)
Q Consensus 96 -~~V~~~-~i~~y~~G~tpNPci~Cnr~iKf-~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~--~L~~~~d~~kD 170 (474)
..+... +...|..+.+|+||+.|.. ++| ..+.++|++.|+++|+|||++++...+.+ ....+ .+....+...
T Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~a~~~g~~~i~tG~~~dd~~~~~~-~~~~~~~~l~~~~~~~~- 148 (219)
T 3bl5_A 72 PNALTRNDIEIEVKDGELPSTFVPGRN-LVFLSFASILAYQIGARHIITGVCETDFSGYPD-CRDEFVKSCNVTVNLAM- 148 (219)
T ss_dssp TGGGC--------------CCCCTTHH-HHHHHHHHHHHHHHTCSEEECCCCC----CCGG-GSHHHHHHHHHHHHHHH-
T ss_pred ccccccccccccccccCCCCceeechH-HHHHHHHHHHHHHcCCCEEEEeccccccCCCCC-CCHHHHHHHHHHHHhcc-
Confidence 011111 1123455788999999766 567 67789999999999999999975321110 00000 0111100000
Q ss_pred ccccccccChhhhccccccccCCCHHHHHHHHHHcCCC
Q 042717 171 QTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLP 208 (474)
Q Consensus 171 QsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp 208 (474)
.+-.++++||.+++|+||+++|+++|+|
T Consensus 149 ----------~~~~~ii~PL~~~~K~ei~~~a~~~glp 176 (219)
T 3bl5_A 149 ----------EKPFVIHTPLMWLNKAETWKLADELGAL 176 (219)
T ss_dssp ----------TSCCEEECTTTTCCHHHHHHHHHHTTCH
T ss_pred ----------CCCeEEEeccccCCHHHHHHHHHHcCCC
Confidence 1113689999999999999999999994
No 14
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=99.88 E-value=8.7e-23 Score=213.03 Aligned_cols=186 Identities=17% Similarity=0.172 Sum_probs=139.9
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCC-EEEEEcchHHHH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP-LEVVHLTDEYWK 96 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIp-l~vvd~~~~f~~ 96 (474)
++||+||+|||+||++++++|+++|++|+++|++++.. ++.+.++++|+++|++ ++++|++++|..
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~G~eV~av~vd~g~~-------------~e~e~a~~~A~~lGi~~~~vvd~~~ef~~ 71 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQK-------------EDFEEARKKALKLGAKKVFIEDVSREFVE 71 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHTTEEEEEEEEESSCC-------------CCHHHHHHHHHHHTCSEEEEEECHHHHHH
T ss_pred CCeEEEEEcChHHHHHHHHHHHHcCCEEEEEEEECCcH-------------HHHHHHHHHHHHhCCCEEEEEeChHHHHH
Confidence 46899999999999999999999999999999998641 4589999999999998 899999999988
Q ss_pred hhHhhhHHHHhcCCCCCcccccch----HHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccc
Q 042717 97 NVVSYIIEEYRCGRTPNPDVLCNT----RIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQT 172 (474)
Q Consensus 97 ~V~~~~i~~y~~G~tpNPci~Cnr----~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQs 172 (474)
.++.+++.. +..++.|..|.+ .+++..+.++|++.|+++|+|||+++. +|+.+ +.+ +
T Consensus 72 ~~~~~~i~~---~a~~e~~y~~g~~~aRp~i~~~l~~~A~~~Ga~~IatGh~~~~-----nDq~r-f~l--g-------- 132 (413)
T 2nz2_A 72 EFIWPAIQS---SALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKG-----NDQVR-FEL--S-------- 132 (413)
T ss_dssp HTHHHHHHT---TCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTS-----SHHHH-HHH--H--------
T ss_pred HHHHHHHHh---CcccccccccccccchHHHHHHHHHHHHHcCCCEEEECCcCcc-----cchHH-HHH--H--------
Confidence 776655542 222345666653 345788899999999999999999842 02211 111 1
Q ss_pred ccccccChhhhcccccccc------CC-CHHHHHHHHHHcCCCCc---CCCCCcccccccccchHHHHHhhhccCCC
Q 042717 173 YFLSHLSQAQLKRLIFPLG------CI-SKEEVRKFATQFDLPNK---DRKDSQGICFLGKIKFSEFVARHIGEMEG 239 (474)
Q Consensus 173 yfL~~L~~~~L~~~i~PL~------~l-tK~EVr~lA~~~GLp~~---~k~~S~diCFl~~~~~~~fL~~~~~~~~G 239 (474)
+..+.+. .++++||. ++ +|+||++||+++|||+. .+|.|+|.||+++.....+|++.....|.
T Consensus 133 --~~~l~p~--l~ii~Pl~d~~~ll~~~sK~EI~~yA~~~Gip~~~~~~~~~S~d~n~~g~s~e~~~Led~~~~~p~ 205 (413)
T 2nz2_A 133 --CYSLAPQ--IKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPP 205 (413)
T ss_dssp --HHHHCTT--CEEECGGGCHHHHTTCC-CHHHHHHHHHTTCCCCSSCCCSSCEEECSSCEEECSGGGGSTTSCCCG
T ss_pred --HHhcCCC--CceeccccchhhhccCCCHHHHHHHHHHcCCCeecCCCCCCCCChhhhhcchhhhhhhchhhcCch
Confidence 1112221 26889999 88 99999999999999986 46789999999766566677765443343
No 15
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=99.87 E-value=2.6e-22 Score=199.11 Aligned_cols=160 Identities=17% Similarity=0.109 Sum_probs=121.0
Q ss_pred CCeEEEEEccchhHHHHHHHHHHc-----------CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCC-CE
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSA-----------GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDV-PL 85 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~-----------G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGI-pl 85 (474)
.++|+|+||||+||+++|+|++++ ||+|++++|.++ +..+.++|+++|+.||| +|
T Consensus 40 ~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~-------------~~~~~~dA~~va~~lgi~~~ 106 (275)
T 1wxi_A 40 IKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYG-------------VQADEQDCQDAIAFIQPDRV 106 (275)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSS-------------SCTTHHHHHHHHHHHCCSEE
T ss_pred CCCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCC-------------CccCHHHHHHHHHHcCCCeE
Confidence 468999999999999999999886 469999998742 12468999999999999 99
Q ss_pred EEEEcchHHHHhhHhhhHHHHhc-CCCCCcccccch--HHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHh
Q 042717 86 EVVHLTDEYWKNVVSYIIEEYRC-GRTPNPDVLCNT--RIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLE 162 (474)
Q Consensus 86 ~vvd~~~~f~~~V~~~~i~~y~~-G~tpNPci~Cnr--~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~ 162 (474)
+++++.+.|. .+...+.. |.++++|..||. ++|+..++.+|.+.|+.++.|||+....
T Consensus 107 ~~i~i~~~~~-----~~~~~l~~~g~~~~~~~~~N~~aR~r~~~l~~~A~~~g~lvlgTgn~~E~~-------------- 167 (275)
T 1wxi_A 107 LTVNIKGAVL-----ASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGTDHAAEAI-------------- 167 (275)
T ss_dssp EECCCHHHHH-----HHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCHHHHT--------------
T ss_pred EEEecHHHHH-----HHHHHHHhcCCCCCCchhhhhhhhHHHHHHHHHHHHCCCEEEECccHHHHc--------------
Confidence 9999976443 23344433 788999999995 5678888999999999999999986421
Q ss_pred hhcCCcccccccccccChhhhccccccccCCCHHHHHHHHHHcCCC--CcCCCCCccccc
Q 042717 163 LSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLP--NKDRKDSQGICF 220 (474)
Q Consensus 163 ~~~d~~kDQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp--~~~k~~S~diCF 220 (474)
.+ |+. ........++||++++|.|||++|+.+|+| .+++|+|+++|-
T Consensus 168 ~G--------y~t---~~gd~~~~~~PL~~l~K~eVr~la~~lglp~~i~~k~psa~L~~ 216 (275)
T 1wxi_A 168 TG--------FFT---KYGDGGTDINPLYRLNKRQGKQLLAALACPEHLYKKAPTADLED 216 (275)
T ss_dssp TT--------CSC---TTTTTCCSBCTTTTCCHHHHHHHHHHTTCCGGGTSCC-------
T ss_pred cC--------ccc---ccCCCccceeeccCCCHHHHHHHHHHhCCcHhhccCCCCCcccC
Confidence 01 111 111234789999999999999999999999 578999999985
No 16
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=99.86 E-value=5.1e-22 Score=207.62 Aligned_cols=171 Identities=20% Similarity=0.179 Sum_probs=126.1
Q ss_pred CCCCCCCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHc-----CCCEE
Q 042717 12 SMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQV-----DVPLE 86 (474)
Q Consensus 12 ~~~~~~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~L-----GIpl~ 86 (474)
++|...+++|+||+|||+||++++++|+++|++|+++|++++.. .++.+.+.++++|+.+ |||++
T Consensus 181 glpi~~~~kvlvalSGGvDS~vll~ll~~~G~~v~av~v~~~~~----------~~~~~~~~v~~~a~~l~~~~ggi~~~ 250 (413)
T 2c5s_A 181 GLPVGVGGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFHSPPF----------TSERAKQKVIDLAQELTKYCKRVTLH 250 (413)
T ss_dssp SBCTTTTEEEEEECCSSSHHHHHHHHHHHBTEEEEEEEEECTTT----------SCHHHHHHHHHHHHHHGGGSSCEEEE
T ss_pred CCccCCCCeEEEEeCCCChHHHHHHHHHHcCCcEEEEEEeCCCC----------CCHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 45666678999999999999999999999999999999997421 1356788899999999 99999
Q ss_pred EEEcchHHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcC
Q 042717 87 VVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKD 166 (474)
Q Consensus 87 vvd~~~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d 166 (474)
++++++.+. .+. .. ....++|+.|++ +++..+.++|++.|+++|+|||++++. .++++.+..
T Consensus 251 vv~~~~~~~-~i~----~~---~~~~~~c~~~Rr-~~~~~~~~~A~~~g~~~I~tG~~~dD~-------ae~~l~~l~-- 312 (413)
T 2c5s_A 251 LVPFTEVQK-TIN----KE---IPSSYSMTVMRR-MMMRITERIAEERNALAITTGESLGQV-------ASQTLDSMH-- 312 (413)
T ss_dssp EEECHHHHH-HHH----HH---SCGGGHHHHHHH-HHHHHHHHHHHHTTCCEEECCCCSSST-------TSCCHHHHH--
T ss_pred EEECcHHHH-HHH----hc---CCcccHHHHHHH-HHHHHHHHHHHHcCCCEEEEcccchhh-------HHHHHHHHh--
Confidence 999976543 221 11 112248899998 668899999999999999999999742 233332221
Q ss_pred CcccccccccccChhhhccccccccCCCHHHHHHHHHHcCCCCcCCCCCccccc
Q 042717 167 KVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICF 220 (474)
Q Consensus 167 ~~kDQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCF 220 (474)
.+.......+++||.+++|+||+++|+++|++.+..+.+++.|.
T Consensus 313 ----------~~~~~~~~~virPL~~l~K~eI~~~a~~~Gl~~~~~~p~~~~c~ 356 (413)
T 2c5s_A 313 ----------TINEVTNYPVIRPLITMDKLEIIKIAEEIGTYDISIRPYEDCCT 356 (413)
T ss_dssp ----------HHGGGCCSCEECTTTTCCHHHHHHHHHHTTCHHHHTSCC-----
T ss_pred ----------cccccCCCEEEeccCCCCHHHHHHHHHHcCCCccccCCCCCCCe
Confidence 11111123689999999999999999999997665455667883
No 17
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=99.84 E-value=2.4e-21 Score=191.84 Aligned_cols=162 Identities=17% Similarity=0.091 Sum_probs=125.4
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcC---------CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCC-CEEE
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAG---------HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDV-PLEV 87 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G---------~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGI-pl~v 87 (474)
.++|+|+||||+||+++|+++++++ ++|++++|.++ +..+.++|+++|+.||| +|++
T Consensus 38 ~~~vvvgLSGGvDSsv~a~La~~a~~~lg~~~~~~~v~av~~~~~-------------~~~d~~~A~~va~~lgi~~~~~ 104 (271)
T 1kqp_A 38 AKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHG-------------TQQDEDDAQLALKFIKPDKSWK 104 (271)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSS-------------SCTTHHHHHHHHHHHCCSEEEE
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEeCCC-------------CCCCHHHHHHHHHhcCCCeEEE
Confidence 4589999999999999999999875 79999998742 12358899999999999 9999
Q ss_pred EEcchHHHHhhHhhhHHHHhcCCCCCcccccch--HHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhc
Q 042717 88 VHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNT--RIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSK 165 (474)
Q Consensus 88 vd~~~~f~~~V~~~~i~~y~~G~tpNPci~Cnr--~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~ 165 (474)
+++.+.|.. .++.+...| |.++++|..||. ++|+..++.+|.+.|+.++.|||+.... .+
T Consensus 105 i~i~~~~~~-~~~~l~~~~--~~~~~~~~~~N~~aR~r~~~l~~~A~~~g~lvl~tgn~~E~~--------------~G- 166 (271)
T 1kqp_A 105 FDIKSTVSA-FSDQYQQET--GDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHAAEAV--------------TG- 166 (271)
T ss_dssp CCCHHHHHH-HHHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCHHHHT--------------TT-
T ss_pred eccHHHHHH-HHHHHhhhc--CCCCcchhhhhHHHHHHHHHHHHHHHHCCCEEEECccHHHhc--------------cC-
Confidence 999865432 222222222 778899999985 4678888899999999999999985421 01
Q ss_pred CCcccccccccccChhhhccccccccCCCHHHHHHHHHHcCCC--CcCCCCCccccc
Q 042717 166 DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLP--NKDRKDSQGICF 220 (474)
Q Consensus 166 d~~kDQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp--~~~k~~S~diCF 220 (474)
|+. ........++||++++|.|||++|+.+|+| .+++|+|+++|-
T Consensus 167 -------y~t---~~gd~~~~~~Pl~~l~K~eVr~la~~lglp~~i~~k~psa~L~~ 213 (271)
T 1kqp_A 167 -------FFT---KYGDGGADLLPLTGLTKRQGRTLLKELGAPERLYLKEPTADLLD 213 (271)
T ss_dssp -------CSC---TTTTTCCSBCTTTTCCHHHHHHHHHHTTCCTHHHHSCCBCCCCS
T ss_pred -------Ccc---ccccccccccccccCCHHHHHHHHHHcCCCHhhccCCCCccccc
Confidence 111 111234689999999999999999999999 468999999985
No 18
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=99.84 E-value=5.5e-21 Score=192.52 Aligned_cols=166 Identities=25% Similarity=0.360 Sum_probs=114.4
Q ss_pred CCeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHH-HHHHcCCCEEEEEcchHHH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA-VCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~-va~~LGIpl~vvd~~~~f~ 95 (474)
+++|+|++|||+||+++|++|+++ |++|+++|++++... ..+.+.+++ +|+++|||++++++++.|.
T Consensus 20 ~~kvlvalSGGvDSsvla~ll~~~~g~~v~av~vd~g~~~-----------~~e~~~~~~~~a~~lgi~~~vv~~~~~f~ 88 (308)
T 2dpl_A 20 DSKAIIALSGGVDSSTAAVLAHKAIGDRLHAVFVNTGFLR-----------KGEPEFVVKTFRDEFGMNLHYVDAQDRFF 88 (308)
T ss_dssp TSCEEEECCSSHHHHHHHHHHHHHHGGGEEEEEEECSCCC-----------TTHHHHHHHHHTTTTCCEEEEEECHHHHH
T ss_pred CCCEEEEEeChHHHHHHHHHHHHhhCCCEEEEEEcCCCCC-----------hHHHHHHHHHHHHHcCCcEEEEECCHHHH
Confidence 468999999999999999999998 999999999986521 245667777 6678999999999987654
Q ss_pred HhhHhhhHHHHhcCCCCCc---ccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccc
Q 042717 96 KNVVSYIIEEYRCGRTPNP---DVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQT 172 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tpNP---ci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQs 172 (474)
..+ .+. .+| |..|.+ ++++.|.++|+++|+++|+|||++++ ..++.. ..+.+.
T Consensus 89 ~~l---------~~~-~~pe~~~~~~~~-~~~~~l~~~A~~~g~~~la~Gh~~dD-------~~Et~~------~iks~~ 144 (308)
T 2dpl_A 89 SAL---------KGV-TDPEEKRKIIGR-VFIEVFEEVAKKIGAEYLIQGTIAPD-------WIESQG------KIKSHH 144 (308)
T ss_dssp HHT---------TTC-CCHHHHHHHHHH-HHHHHHHHHHHHHTCSEEECCCCCC--------------------------
T ss_pred Hhh---------hCC-CCHHHHHHHHHH-HHHHHHHHHHHHcCcCEEEECCCCcc-------chhhcc------chhhhh
Confidence 321 232 245 445544 56788899999999999999999873 333311 112222
Q ss_pred ccccccChhhhccccccccCCCHHHHHHHHHHcCCCC---cCCCCCccccc
Q 042717 173 YFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPN---KDRKDSQGICF 220 (474)
Q Consensus 173 yfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~---~~k~~S~diCF 220 (474)
+ +..++......+++||.+++|+||+++|+++|+|+ +..|.+ +.|+
T Consensus 145 ~-~~~l~~~~~~~virPL~~l~K~EI~~~a~~~glp~~i~~~~P~~-~~~L 193 (308)
T 2dpl_A 145 N-VGGLPEKLNLKLIEPLRDLYKDEVRELAKFLGLPEKIYNRMPFP-GPGL 193 (308)
T ss_dssp ---------CCCEEECTTTTCCHHHHHHHHHHTTCCHHHHTCCCCC-TTGG
T ss_pred c-cccCCccCCCeEEEEcccCCHHHHHHHHHHhCCCceeeecCCCC-cccc
Confidence 1 22333332247999999999999999999999996 334433 4454
No 19
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.84 E-value=1.6e-21 Score=209.64 Aligned_cols=173 Identities=20% Similarity=0.257 Sum_probs=116.6
Q ss_pred CCeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHH-HHHHcCCCEEEEEcchHHH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA-VCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~-va~~LGIpl~vvd~~~~f~ 95 (474)
+++|+||+|||+||+++|++|+++ |++|+++|++++.. +..+.+.+.+ +|+++|||++++++++.|.
T Consensus 230 ~~kvlvalSGGvDSsvla~ll~~~~G~~v~av~vd~g~~-----------~~~e~~~~~~~~a~~lgi~~~vv~~~~~~~ 298 (527)
T 3tqi_A 230 KEQVIVGLSGGVDSAVTATLVHKAIGDQLVCVLVDTGLL-----------RLNEVDEVLNVFQKHLGAKVICVDAKDRFM 298 (527)
T ss_dssp TSCEEEECTTTHHHHHHHHHHHHHHGGGEEEEEECCSCS-----------CTTHHHHHHHHHTTSSCCEEEEECCHHHHH
T ss_pred CCeEEEEEecCcCHHHHHHHHHHHhCCeEEEEEeccCCC-----------ChhHHHHHHHHHHHHcCCcEEEEeChHHHH
Confidence 378999999999999999999998 99999999998643 2345566655 9999999999999987765
Q ss_pred HhhHhhhHHHHhcCCCCCccc---ccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccc
Q 042717 96 KNVVSYIIEEYRCGRTPNPDV---LCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQT 172 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tpNPci---~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQs 172 (474)
.. ..|. .+|+. .|.+ .+++.|.++|+++|+++|+|||+.++ ..++..++.+......-.
T Consensus 299 ~~---------l~g~-~~~~~~r~~~~~-~~~~~~~~~A~~~g~~~la~Gh~~dD-------~~Et~~~~~g~~~~ik~~ 360 (527)
T 3tqi_A 299 KA---------LKGI-SDPEEKRKIAGE-QFIRVFEEQAKKLNVKWLGQGTIYPD-------VIESAKTKTGKGHIIKTH 360 (527)
T ss_dssp SS---------SSSC-CCHHHHHHHHHH-HHHHHHHHTTTTTTCCEEECCCCHHH-------HHCC--------------
T ss_pred Hh---------hcCC-CChhhhhhhhHH-HHHHHHHHHHHHcCCCEEEccccCCc-------cccccccCCChhheeeee
Confidence 43 1232 24544 4444 34678888999999999999998874 334433332111111111
Q ss_pred ccccccChhhhccccccccCCCHHHHHHHHHHcCCCC---cCCCCCccccc
Q 042717 173 YFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPN---KDRKDSQGICF 220 (474)
Q Consensus 173 yfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~---~~k~~S~diCF 220 (474)
..+.+++.....++++||.+++|+||+++|+++|+|+ +.+|-+ +.|.
T Consensus 361 ~~l~gl~~~~~~~iirPL~~l~K~EIr~~a~~lGlp~~~v~~~P~p-~~~l 410 (527)
T 3tqi_A 361 HNVGGLPLNMELKLIEPLRELFKDEVRKLGLELGLPADLIYRHPFP-GPGL 410 (527)
T ss_dssp ------------CEECTTTTCCHHHHHHHHHHHTCCHHHHTCCCCC-TTGG
T ss_pred cccccCcccccCccccchhcCCHHHHHHHHHHcCCChhhhccCCCC-CCCc
Confidence 2355666544457999999999999999999999998 666633 4565
No 20
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=208.83 Aligned_cols=184 Identities=22% Similarity=0.315 Sum_probs=134.8
Q ss_pred CCeEEEEEccchhHHHHHHHHHHc-C-CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSA-G-HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~-G-~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~ 95 (474)
.++|+||+|||+||+++|++|+++ | ++|+++||+++... ..+.++|+++|++|||+++++|+++.|.
T Consensus 240 ~~~vvv~lSGGvDSsVla~Ll~~alG~~~V~aV~vd~g~~~-----------~~e~e~a~~~a~~lGI~~~vvdi~~~f~ 308 (697)
T 2vxo_A 240 TSKVLVLLSGGVDSTVCTALLNRALNQEQVIAVHIDNGFMR-----------KRESQSVEEALKKLGIQVKVINAAHSFY 308 (697)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHHSCGGGEEEEEEECSCCC-----------SSTTHHHHHHHHHTTCCEEEEECHHHHH
T ss_pred ccceEEEccCchHHHHHHHHHHHhcCCceEEEEEeccccCC-----------cchHHHHHHHHHHhCCcEEEecchHHHH
Confidence 478999999999999999999987 8 99999999987531 2457889999999999999999998776
Q ss_pred HhhHhhhH----HHHhcCCCCCcccccchHHHHHH----H----HHHHHHcCCC----EEEEceecccccCccCCCchhh
Q 042717 96 KNVVSYII----EEYRCGRTPNPDVLCNTRIKFGA----F----MDAISSMEFD----YVASGHYAKVVHSSADQEYKPS 159 (474)
Q Consensus 96 ~~V~~~~i----~~y~~G~tpNPci~Cnr~iKf~~----l----~~~A~~~Gad----~IATGH~a~~~~~~~dd~~~~~ 159 (474)
..+...+. ..|..|.++++|..|+...|++. + .++|++.|++ +|+|||++++ ..++.
T Consensus 309 ~~~~~l~~~~~~~~Y~~g~~~~l~~v~~~~~kR~iig~~~~~v~~~~A~~~g~~~~~~~LatG~~~~D-------~iEs~ 381 (697)
T 2vxo_A 309 NGTTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIGDTFVKIANEVIGEMNLKPEEVFLAQGTLRPD-------LIESA 381 (697)
T ss_dssp TCCCBCC----------CBCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTSEEEECCCSSCC-------SBCCH
T ss_pred hhhhhhcccccccchhcccCcCcccccCHHHHHhHHHHHHHHHHHHHHHHcCCCcccEEEEEeccChh-------hhhhh
Confidence 64322211 24666778999999998766643 3 4457889988 9999999873 33443
Q ss_pred H--HhhhcCCcccc---cccccccChhhhccccccccCCCHHHHHHHHHHcCCCC--cCCCCCcccccc
Q 042717 160 V--LELSKDKVKDQ---TYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPN--KDRKDSQGICFL 221 (474)
Q Consensus 160 ~--L~~~~d~~kDQ---syfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~--~~k~~S~diCFl 221 (474)
. +..+.+..|+| ++++..+ .....+++||.+++|+||+++|+++|+|+ ..++.+.+.|..
T Consensus 382 ~~~l~~g~~~iks~~nv~g~~~~~--~~~~~~i~PL~~L~K~EVr~la~~lGlP~~i~~r~Ps~gpgL~ 448 (697)
T 2vxo_A 382 SLVASGKAELIKTHHNDTELIRKL--REEGKVIEPLKDFHKDEVRILGRELGLPEELVSRHPFPGPGLA 448 (697)
T ss_dssp HHHHHSCCCGGGSCCSSCHHHHHH--HHTTCEECGGGGSCHHHHHHHHHHTTCCHHHHTCCCCCTTGGG
T ss_pred hhhhhcCccccccccccchhhHHh--ccCCEEEEecccCCHHHHHHHHHHcCCCcceeeCCCCCCCccc
Confidence 3 22333445555 3333222 12247999999999999999999999998 466777676643
No 21
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.83 E-value=6.7e-21 Score=186.72 Aligned_cols=159 Identities=19% Similarity=0.211 Sum_probs=124.8
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcC--CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAG--HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEY 94 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G--~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f 94 (474)
+.++|+|++|||+||+++|+++++++ ++|+++||+++. + .+.++|+++|+.||++++++++++.+
T Consensus 21 ~~~~vvv~lSGGiDSs~~~~l~~~~~g~~~v~av~~~~~~------------~-~~~~~a~~~a~~lgi~~~~i~i~~~~ 87 (257)
T 2e18_A 21 GNNGVVIGISGGVDSATVAYLATKALGKEKVLGLIMPYFE------------N-KDVEDAKLVAEKLGIGYKVINIKPIV 87 (257)
T ss_dssp CTTCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCSSC------------S-THHHHHHHHHHHHTCEEEECCCHHHH
T ss_pred CCCcEEEEecCCHHHHHHHHHHHHhcCCCcEEEEEeCCCC------------c-hHHHHHHHHHHHhCCCEEEEEChHHH
Confidence 34689999999999999999999984 899999998642 3 57899999999999999999997543
Q ss_pred HHhhHhhhHHHHhcCCCCCcccccch--HHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccc
Q 042717 95 WKNVVSYIIEEYRCGRTPNPDVLCNT--RIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQT 172 (474)
Q Consensus 95 ~~~V~~~~i~~y~~G~tpNPci~Cnr--~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQs 172 (474)
. .+.+.+.. ++++|..||. .+|+..+.++|.+.|+.+|+|||+.++. .+
T Consensus 88 ~-----~~~~~l~~--~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~tg~~~e~~--------------~G-------- 138 (257)
T 2e18_A 88 D-----SFVENLEL--NLDRKGLGNIMSRTRMIMLYAHANSLGRIVLGTSNRSEFL--------------TG-------- 138 (257)
T ss_dssp H-----HHHHHHCS--CCCHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCHHHHH--------------HT--------
T ss_pred H-----HHHHHhcc--ccccchhHHHHHHHHHHHHHHHHHHcCCEEEEcCchhHHh--------------cC--------
Confidence 2 23343332 3677888873 4788999999999999999999975421 11
Q ss_pred ccccccChhhhccccccccCCCHHHHHHHHHHcCCC--CcCCCCCccccc
Q 042717 173 YFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLP--NKDRKDSQGICF 220 (474)
Q Consensus 173 yfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp--~~~k~~S~diCF 220 (474)
|+.. .......++||++++|+||+++|+.+|+| ..+++.|.+.|+
T Consensus 139 y~t~---~g~~~~~i~Pl~~l~K~ev~~la~~~gip~~i~~~~ps~~l~~ 185 (257)
T 2e18_A 139 YFTK---WGDGASDYAPIINLYKTEVWEIAKRIGVPERIVKKKPSAGLWE 185 (257)
T ss_dssp CSCT---TSTTCSSBCTTTTSCHHHHHHHHHHHTCCHHHHHSCCCCCSST
T ss_pred Ceec---cCCCccCEeecCCCcHHHHHHHHHHcCCCHHHhCCCCCCCcCC
Confidence 1100 01124689999999999999999999999 467899999998
No 22
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.83 E-value=2.6e-20 Score=199.22 Aligned_cols=171 Identities=23% Similarity=0.270 Sum_probs=120.5
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHh
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKN 97 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~ 97 (474)
+++|+||+|||+||+++|++|+++|++|+++|++++.. ...+.+.++++|+++||+++++++++.|...
T Consensus 209 ~~kvvvalSGGvDSsvla~ll~~~g~~v~av~vd~g~~-----------~~~e~~~v~~~~~~lgi~~~vv~~~~~f~~~ 277 (503)
T 2ywb_A 209 KDRVLLAVSGGVDSSTLALLLAKAGVDHLAVFVDHGLL-----------RLGEREEVEGALRALGVNLLVVDAKERFLKA 277 (503)
T ss_dssp TSEEEEEECSSHHHHHHHHHHHHHTCEEEEEEEECSCS-----------CTTHHHHHHHHHHHTTCCEEEEECHHHHHHH
T ss_pred CccEEEEecCCcchHHHHHHHHHcCCeEEEEEEeCCCC-----------ChHHHHHHHHHHHHhCCCEEEEECcHHHHHh
Confidence 47899999999999999999999999999999998642 2356889999999999999999998766542
Q ss_pred hHhhhHHHHhcCCCCCc---ccccchHHHHHHHHHHHHHc-CCCEEEEceecccccCccCCCchhhHHhhhcCCcccccc
Q 042717 98 VVSYIIEEYRCGRTPNP---DVLCNTRIKFGAFMDAISSM-EFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTY 173 (474)
Q Consensus 98 V~~~~i~~y~~G~tpNP---ci~Cnr~iKf~~l~~~A~~~-Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsy 173 (474)
+ .|.+ +| |..|.+ .+++.|.++|+++ |+++|+|||+.++. .++..+ ...+..|++..
T Consensus 278 l---------~g~~-~pe~~r~~~~~-~~~~~l~~~A~~~~g~~~la~G~~~~D~-------~Et~~~-g~~~~iks~~~ 338 (503)
T 2ywb_A 278 L---------KGVE-DPEEKRKIIGR-EFVAAFSQVARERGPFRFLAQGTLYPDV-------IESAGG-HGAAKIKSHHN 338 (503)
T ss_dssp H---------TTCC-CHHHHHHHHHH-HHHHHHHHHHHHHCCCSEEECCCCHHHH-------HC----------------
T ss_pred h---------cCCC-ChHHHhhhhhH-HHHHHHHHHHHhcCCCCEEEECCcCccc-------hhhccC-Ccccccccccc
Confidence 1 2322 34 444544 4578888899999 99999999987632 232221 11222333322
Q ss_pred cccccChhhhccccccccCCCHHHHHHHHHHcCCCC---cCCCCCccccc
Q 042717 174 FLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPN---KDRKDSQGICF 220 (474)
Q Consensus 174 fL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~---~~k~~S~diCF 220 (474)
+..++......+++||.+++|+||+++|+++|+|+ +..| +.+.|+
T Consensus 339 -l~~l~~~~~~~ii~PL~~l~K~EVr~~a~~~glp~~i~~~~P-~~~~~L 386 (503)
T 2ywb_A 339 -VGGLPEDLEFELLEPFRLLFKDEVRELALLLGLPDTLRLRHP-FPGPGL 386 (503)
T ss_dssp ---CCCSSCCCEEECTTTTCCHHHHHHHHHHTTCCHHHHSCCC-CCTTGG
T ss_pred -cccccccccCceEehhhcCCHHHHHHHHHHcCCChhheecCC-CCCcch
Confidence 33444333247999999999999999999999996 3344 446777
No 23
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.83 E-value=1.5e-20 Score=185.38 Aligned_cols=159 Identities=19% Similarity=0.214 Sum_probs=124.9
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcC-CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAG-HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWK 96 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G-~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~ 96 (474)
.++|+|++|||+||+++++++++++ ++|++++|+++. .+..+.++|+++|+.|||+++++++++.+.
T Consensus 25 ~~~vvv~lSGGiDSsv~~~l~~~~~~~~v~av~~~~~~-----------~~~~e~~~a~~~a~~lgi~~~~i~i~~~~~- 92 (268)
T 1xng_A 25 FKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSV-----------SMPENKTDALNLCEKFSIPYTEYSIAPYDA- 92 (268)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHGGGEEEEECCCSS-----------SCHHHHHHHHHHHHHHTCCEEECCCHHHHH-
T ss_pred CCCEEEEccCcHHHHHHHHHHHHhCCCCEEEEEeCCCC-----------CCHHHHHHHHHHHHHcCCCEEEEeChHHHH-
Confidence 4689999999999999999999985 999999998753 146889999999999999999999976432
Q ss_pred hhHhhhHHHHhcCCCCCcccccc--hHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccc
Q 042717 97 NVVSYIIEEYRCGRTPNPDVLCN--TRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYF 174 (474)
Q Consensus 97 ~V~~~~i~~y~~G~tpNPci~Cn--r~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyf 174 (474)
.+.+.+.. .+|+..|| +.+|+..+.++|.+.|+.+|+|||... ++ .+ |+
T Consensus 93 ----~~~~~~~~---~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tg~~~E-----------~~---~G--------y~ 143 (268)
T 1xng_A 93 ----IFSSHFKD---ASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSNKSE-----------RM---LG--------YG 143 (268)
T ss_dssp ----HHHHHCTT---CCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCHHH-----------HH---HT--------CS
T ss_pred ----HHHHHhhh---cCCchHHHHHHHHHHHHHHHHHHHCCCEEEECCcHHH-----------Hh---cC--------cc
Confidence 22333221 26777887 357889999999999999999998532 11 11 11
Q ss_pred ccccChhhhccccccccCCCHHHHHHHHHHcCCC--CcCCCCCccccc
Q 042717 175 LSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLP--NKDRKDSQGICF 220 (474)
Q Consensus 175 L~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp--~~~k~~S~diCF 220 (474)
. ........++||++++|.||+++|+.+|+| ++++|.|.+.|+
T Consensus 144 t---~~gd~~~~i~PL~~l~K~ev~~la~~~gip~~i~~k~psa~l~~ 188 (268)
T 1xng_A 144 T---LFGDLACAINPIGELFKTEVYELARRLNIPKKILNKPPSADLFV 188 (268)
T ss_dssp C---TTTTTCCSEETTTTSCHHHHHHHHHHTTCCHHHHTSCCCCCSST
T ss_pred c---ccCCCCeeEEecCCCCHHHHHHHHHHcCCcHHHhcCCCCcCcCC
Confidence 1 011224789999999999999999999999 578899999998
No 24
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=99.82 E-value=1.6e-20 Score=189.14 Aligned_cols=127 Identities=13% Similarity=0.168 Sum_probs=105.6
Q ss_pred CCCCCCCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHc-------CCC
Q 042717 12 SMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQV-------DVP 84 (474)
Q Consensus 12 ~~~~~~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~L-------GIp 84 (474)
++|....+|++|+||| +||+||+++|+++|++|+++||+ |. +.+.+.|+++|+.| +||
T Consensus 173 GlP~g~~~kvlvllSG-vDS~vaa~ll~~~G~~v~~v~~~-~~-------------~~~~~~a~~~a~~l~~~~~~~~i~ 237 (307)
T 1vbk_A 173 GLPIGTEGRMIGILHD-ELSALAIFLMMKRGVEVIPVYIG-KD-------------DKNLEKVRSLWNLLKRYSYGSKGF 237 (307)
T ss_dssp SBCTTTTCEEEEECSS-HHHHHHHHHHHHBTCEEEEEEES-CS-------------SHHHHHHHHHHHHHHTTCTTSCCC
T ss_pred CCCcCCCCcEEEEEeC-CcHHHHHHHHHhCCCeEEEEEEE-EC-------------HHHHHHHHHHHHHHhhhccCCCCc
Confidence 5677777899999999 99999999999999999999998 31 35688899999999 899
Q ss_pred EEEEE-cchHHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhh
Q 042717 85 LEVVH-LTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLEL 163 (474)
Q Consensus 85 l~vvd-~~~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~ 163 (474)
+++++ +++.| ++|+++||++|+||||+++.
T Consensus 238 ~~vv~~~~~~~----------------------------------~~A~~~ga~~I~tG~~~~~~--------------- 268 (307)
T 1vbk_A 238 LVVAESFDRVL----------------------------------KLIRDFGVKGVIKGLRPNDL--------------- 268 (307)
T ss_dssp CEEESSHHHHH----------------------------------HHHHHHTCCEEECCCCGGGC---------------
T ss_pred EEEeCCCHHHH----------------------------------HHHHHcCCCEEEECcccchh---------------
Confidence 99998 65321 67888999999999998631
Q ss_pred hcCCcccccccccccChhhhccccccccCCCHHHHHHHHHHcCC
Q 042717 164 SKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDL 207 (474)
Q Consensus 164 ~~d~~kDQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GL 207 (474)
.+|+++|..+.+....+++|||++++|+||+++|+++|+
T Consensus 269 -----~~qt~~l~~~~~~~~~~vl~PL~~~~K~eI~~~a~~iGl 307 (307)
T 1vbk_A 269 -----NSEVSEITEDFKMFPVPVYYPLIALPEEYIKSVKERLGL 307 (307)
T ss_dssp -----CTTCHHHHHHHHHCSSCEECHHHHSCHHHHHHHHHHHTC
T ss_pred -----ccccHHHhhhccCcCCeEEEccCCCCHHHHHHHHHHcCC
Confidence 246666555555455679999999999999999999986
No 25
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=99.82 E-value=3.1e-20 Score=176.94 Aligned_cols=158 Identities=13% Similarity=0.108 Sum_probs=117.0
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHh
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKN 97 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~ 97 (474)
+++|+||+|||+||+|++++|.+.+++|.++|++++.. .+++.++++++|+++|||+++++....+...
T Consensus 44 ~~~v~Va~SGGkDS~vLL~ll~~~~~~v~~v~vd~g~~-----------~~e~~~~v~~~~~~~gi~~~v~~~~~~~~~~ 112 (215)
T 1sur_A 44 PGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYL-----------FPETYRFIDELTDKLKLNLKVYRATESAAWQ 112 (215)
T ss_dssp CSEEEEECCCCTTHHHHHHHHHHHSTTCEEEEEECSCB-----------CHHHHHHHHHHHHHTTCEEEEEECSSCHHHH
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCCCCeEEEeeCCCC-----------CHHHHHHHHHHHHHhCCcEEEEeCCCCHHHH
Confidence 36899999999999999999999999999999998642 3577899999999999999999876433221
Q ss_pred hHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccc
Q 042717 98 VVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSH 177 (474)
Q Consensus 98 V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~ 177 (474)
+...- ..|..+ |++|..|...+|+..|.+++++.|++.++|||++++. ..+..+. .
T Consensus 113 ~~~~g-~~~~~~--~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd~-------~~r~~~~--------------~ 168 (215)
T 1sur_A 113 EARYG-KLWEQG--VEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQS-------GSRANLP--------------V 168 (215)
T ss_dssp HHHHC-CGGGSH--HHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTSS-------STTTTCC--------------S
T ss_pred HHhcC-CCCCCC--ccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhhh-------hhhcCCC--------------c
Confidence 11100 112222 3455667777899999999999999999999998631 1111111 0
Q ss_pred cChhhhccccccccCCCHHHHHHHHHHcCCCCc
Q 042717 178 LSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK 210 (474)
Q Consensus 178 L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~ 210 (474)
+....-..+++||.+|+|+||++|++++|||+.
T Consensus 169 ~~~~~~~~~i~PLl~~t~~dI~~y~~~~~lp~~ 201 (215)
T 1sur_A 169 LAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYH 201 (215)
T ss_dssp EEEETTEEEECTTTTCCHHHHHHHHHHHTCCCC
T ss_pred cccCCCEEEEechHhCCHHHHHHHHHHhCCCCC
Confidence 111111257999999999999999999999884
No 26
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.82 E-value=3e-20 Score=199.71 Aligned_cols=173 Identities=23% Similarity=0.302 Sum_probs=117.1
Q ss_pred CCeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHH-HHHHcCCCEEEEEcchHHH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA-VCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~-va~~LGIpl~vvd~~~~f~ 95 (474)
.++|+|++|||+||+++|++|+++ |.+|+++|++++.. +..+.+.+.+ +|+.+||+++++++++.|.
T Consensus 227 ~~~vvvalSGGvDSsv~a~ll~~a~G~~v~av~v~~g~~-----------~~~e~~~~~~~la~~lgi~~~~v~~~~~f~ 295 (525)
T 1gpm_A 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLL-----------RLNEAEQVLDMFGDHFGLNIVHVPAEDRFL 295 (525)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHHHGGGEEEEEEECSCS-----------CTTHHHHHHHHHTTTTCCCEEEEECHHHHH
T ss_pred ccceEEEecCCCCHHHHHHHHHHHhCCCEEEEEEeCCCC-----------CchHHHHHHHHHHHHhCCcEEEEeccHHHH
Confidence 368999999999999999999998 99999999998643 1245677755 8999999999999987665
Q ss_pred HhhHhhhHHHHhcCCCCCcc---cccchHHHHHHHHHHHHHc-CCCEEEEceecccccCccCCCchhhH-HhhhcCCccc
Q 042717 96 KNVVSYIIEEYRCGRTPNPD---VLCNTRIKFGAFMDAISSM-EFDYVASGHYAKVVHSSADQEYKPSV-LELSKDKVKD 170 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tpNPc---i~Cnr~iKf~~l~~~A~~~-Gad~IATGH~a~~~~~~~dd~~~~~~-L~~~~d~~kD 170 (474)
+.+ .|.+ +|+ ..|.+ .+++.|.++|+++ |+++|++||+.++ ..++.. ...+.+..|+
T Consensus 296 ~~l---------~~~~-~pe~~~~~~~~-~~~~~l~~~A~~~~g~~~l~~Gt~~~D-------~~E~~~~~~~~s~~iks 357 (525)
T 1gpm_A 296 SAL---------AGEN-DPEAKRKIIGR-VFVEVFDEEALKLEDVKWLAQGTIYPD-------VIESAASATGKAHVIKS 357 (525)
T ss_dssp HHH---------TTCC-CHHHHHHHHHH-HHHHHHHHHHHHSSSEEEEECCCCHHH-------HHHTTC-----------
T ss_pred Hhh---------cCCC-ChHHhhhhhhH-HHHHHHHHHHHhcCCCCEEEeCCCCcc-------hhhhcCccccccccccc
Confidence 431 2332 554 44543 4568888999999 9999999998653 223210 1123344555
Q ss_pred ccccccccChhhhccccccccCCCHHHHHHHHHHcCCCC--cCCCCCccccc
Q 042717 171 QTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPN--KDRKDSQGICF 220 (474)
Q Consensus 171 QsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~--~~k~~S~diCF 220 (474)
+.+ +..++......+++||.+++|+||+++|+++|+|. ..++.+.+.|+
T Consensus 358 ~~~-l~gl~~~~~~~~i~PL~~l~K~EVr~la~~lglp~~i~~~~P~~~p~L 408 (525)
T 1gpm_A 358 HHN-VGGLPKEMKMGLVEPLKELFKDEVRKIGLELGLPYDMLYRHPFPGPGL 408 (525)
T ss_dssp ------------CCEEECTTTTCCHHHHHHHHHHTTCCHHHHTSCCCCTTGG
T ss_pred ccc-ccccccccCCcEEehhhcCCHHHHHHHHHHcCCCHHhcccCCCCchhh
Confidence 554 56666544457999999999999999999999995 23333447787
No 27
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=99.80 E-value=8e-20 Score=181.41 Aligned_cols=165 Identities=16% Similarity=0.073 Sum_probs=126.9
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHc-----------CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCC-C
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSA-----------GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDV-P 84 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~-----------G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGI-p 84 (474)
+.++++|++|||+||++++++++++ +++|++++|.++. ..+.++|+++|+.+|+ +
T Consensus 39 g~~~vvvglSGGvDSal~a~l~~~A~~~Lg~~~~~~~~~v~av~~p~~~-------------~~~~~~A~~~a~~lgi~~ 105 (279)
T 3q4g_A 39 RYKSLVLGISGGVDSTTCGRLAQLAVEELNQQHNTTEYQFIAVRLPYGE-------------QKDEDEAQLALSFIRPTH 105 (279)
T ss_dssp TCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEECCSSS-------------CSCHHHHHHHHHHHCCSE
T ss_pred CCCCEEEEccCCHHHHHHHHHHHHHHHHhCcccccCCceEEEEEecCCC-------------hHHHHHHHHHHHHhCCCe
Confidence 3468999999999999999997765 7899999998532 2357899999999999 9
Q ss_pred EEEEEcchHHHHhhH---hhhHHHHh--cCCCCCcccccc--hHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCch
Q 042717 85 LEVVHLTDEYWKNVV---SYIIEEYR--CGRTPNPDVLCN--TRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYK 157 (474)
Q Consensus 85 l~vvd~~~~f~~~V~---~~~i~~y~--~G~tpNPci~Cn--r~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~ 157 (474)
|+++++++.|..-+. +.+.+.+. .|.++++|..|| .++|+..|+.+|.+.|+-++.|||.....
T Consensus 106 ~~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~NiqaR~R~~~Ly~~A~~~g~lVlgTgn~sE~~--------- 176 (279)
T 3q4g_A 106 SVSVNIKAGVDGLHAASHHALANTGLIPSDPAKVDFIKGNVKARARMVAQYEIAGYVGGLVLGTDHSAENI--------- 176 (279)
T ss_dssp EEECCCHHHHHHHHHHHHHHHHHHTCSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCCHHHHH---------
T ss_pred EEEEECHHHHHHHHHHHHHHhhhhcccccCCCcccchhhhHHHHHHHHHHHHHHHHCCCEEecCccHHhhh---------
Confidence 999999876654211 12333332 267889999999 78899999999999999999999986421
Q ss_pred hhHHhhhcCCcccccccccccChhhhccccccccCCCHHHHHHHHHHcCCC--CcCCCCCcccc
Q 042717 158 PSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLP--NKDRKDSQGIC 219 (474)
Q Consensus 158 ~~~L~~~~d~~kDQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp--~~~k~~S~diC 219 (474)
.+ ||.. . ......++||++++|.||+++|+.+|+| .+++|.|.++.
T Consensus 177 -----~G--------y~Tk--y-GD~~~di~Pl~dl~Kt~Vr~LA~~lgiP~~i~~K~PSa~L~ 224 (279)
T 3q4g_A 177 -----TG--------FYTK--F-GDGACDLAPLFGLNKRQVRLLAKTLGAPEQLVYKTPTADLE 224 (279)
T ss_dssp -----HT--------CSCT--T-TTTCCSBCTTTTCCHHHHHHHHHHTTCCHHHHTCCCSCCC-
T ss_pred -----cc--------chhh--c-CCcccceeecCCCcHHHHHHHHHHhCCcHHHhcCCCCCCcC
Confidence 11 1110 0 1124679999999999999999999999 57899998764
No 28
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.79 E-value=1.1e-19 Score=196.46 Aligned_cols=173 Identities=15% Similarity=0.299 Sum_probs=115.2
Q ss_pred CCeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHH-HHHHHHc-CCCEEEEEcchHH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYA-KAVCDQV-DVPLEVVHLTDEY 94 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a-~~va~~L-GIpl~vvd~~~~f 94 (474)
.++|+||+|||+||+|+|++|+++ |++|+++|++++.. ...+.+.+ +.+|+.+ ||+++++|+++.|
T Consensus 255 ~~~vvvalSGGvDSsv~a~ll~~~~G~~v~~v~vd~g~~-----------~~~e~~~~~~~~~~~l~gi~~~~vd~~~~f 323 (556)
T 3uow_A 255 DHYVIAAMSGGIDSTVAAAYTHKIFKERFFGIFIDNGLL-----------RKNEAENVYTFLKSTFPDMNITKIDASENF 323 (556)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHHHGGGEEEEEEECSCS-----------CTTHHHHHHHHHHHHCTTSEEEEEECHHHH
T ss_pred CceEEEEcccCCCHHHHHHHHHHHhCCeEEEEEEecCCC-----------ChHHHHHHHHHHHHhcCCCCeEEeccHHHH
Confidence 679999999999999999999987 99999999998653 12345555 6799999 9999999999888
Q ss_pred HHhhHhhhHHHHhcCCCCCccc---ccchHHHHHHHHHHHHHcCC----CEEEEceecccccCccCCCchhhHHhhhcCC
Q 042717 95 WKNVVSYIIEEYRCGRTPNPDV---LCNTRIKFGAFMDAISSMEF----DYVASGHYAKVVHSSADQEYKPSVLELSKDK 167 (474)
Q Consensus 95 ~~~V~~~~i~~y~~G~tpNPci---~Cnr~iKf~~l~~~A~~~Ga----d~IATGH~a~~~~~~~dd~~~~~~L~~~~d~ 167 (474)
+... .|. .+|.. .|.+ ..+..|.+.|++.|+ +++++||+.++. .++.......+.
T Consensus 324 ~~~l---------~g~-~~pe~kr~iig~-~f~~vf~~~A~~~~~~~~~~~la~Gt~y~D~-------ies~~~~g~~~~ 385 (556)
T 3uow_A 324 LSNL---------QGV-TDPEQKRKIIGK-LFIEEFEKAVNNIDIDINKTFLLQGTLYPDI-------IESKCSKNLSDT 385 (556)
T ss_dssp HHHT---------TTC-CCHHHHHHHHHH-HHHHHHHHHHHTTCCCGGGEEEECCCCHHHH-------HHHSCC------
T ss_pred HHhh---------cCC-CChHHHHHHHHH-HHHHHHHHHHHHcCCcccccccccCccChHH-------Hhhcccccccce
Confidence 7542 122 23322 2222 235778889999986 999999987632 222211111334
Q ss_pred cccccccccccChhhhccccccccCCCHHHHHHHHHHcCCC---CcCCCCCcccccc
Q 042717 168 VKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLP---NKDRKDSQGICFL 221 (474)
Q Consensus 168 ~kDQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp---~~~k~~S~diCFl 221 (474)
.|++.+ +.+++.....++++||.+++|+|||++|+++||| .+.+|-+ +.|+.
T Consensus 386 iks~~n-~~gl~~~~~~~li~PL~~l~K~EVr~la~~lGlp~~~~~r~P~p-~p~la 440 (556)
T 3uow_A 386 IKTHHN-VGGLPKNLKFKLFEPFKYLFKDDVKTLSRELNLPEEITNRHPFP-GPGLA 440 (556)
T ss_dssp --------------CCCEEECTTTTCCHHHHHHHHHTTTCCHHHHHCCCCC-TTTTT
T ss_pred eccccc-ccccccccccceEeecccCcHHHHHHHHHHcCCCHHHhCCCCCC-CCCcc
Confidence 455555 3445544445799999999999999999999999 4555533 56764
No 29
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=99.79 E-value=1.7e-19 Score=179.35 Aligned_cols=162 Identities=20% Similarity=0.103 Sum_probs=123.1
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHc-------CC--cEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcC-CCEE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSA-------GH--SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD-VPLE 86 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~-------G~--eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LG-Ipl~ 86 (474)
+.++++|++|||+||++++++++++ |+ +|++++|.++ +..+.++|+++|+.+| |+++
T Consensus 45 g~~~vvvglSGGiDSal~a~La~~A~daLG~~~~~~~viav~~p~~-------------~~~~~~dA~~~a~~lg~i~~~ 111 (285)
T 3dpi_A 45 GLRACVLGISGGIDSSTAGRLAQLAVERLRASGYDARFVAMRLPYG-------------AQHDEADARRALAFVRADETL 111 (285)
T ss_dssp TCCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSC-------------C---CHHHHHHHHHHCCSEEE
T ss_pred CCCcEEEEccCChhHHHHHHHHHHHHHHhcccCcccEEEEEEcCCC-------------CHHHHHHHHHHHHHcCCCcEE
Confidence 3568999999999999999988763 65 7888888643 2356788999999999 7999
Q ss_pred EEEcchHHHHhhHhhhHHHHh-cCCCC-----Ccccccc--hHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchh
Q 042717 87 VVHLTDEYWKNVVSYIIEEYR-CGRTP-----NPDVLCN--TRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKP 158 (474)
Q Consensus 87 vvd~~~~f~~~V~~~~i~~y~-~G~tp-----NPci~Cn--r~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~ 158 (474)
++|+++.|.. +.+.+. .|.++ ++|..|| .++|+..++.+|.+.|+-++.|||..... .+
T Consensus 112 ~i~i~~~~~~-----~~~~l~~~g~~~~~~~~~~~~~~NiqaR~Rm~~L~~~A~~~g~lVlgTgn~sE~~-------~G- 178 (285)
T 3dpi_A 112 TVDVKPAADA-----MLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAGARNGVVIGTDHAAESV-------MG- 178 (285)
T ss_dssp ECCCHHHHHH-----HHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCHHHHH-------HH-
T ss_pred EEEChHHHHH-----HHHHHHhcCccccccCCCchhhhhHHHHHHHHHHHHHHHHCCCEEEeCccHHhhh-------CC-
Confidence 9999865542 334443 35553 5788899 77889999999999999999999986421 00
Q ss_pred hHHhhhcCCcccccccccccChhhhccccccccCCCHHHHHHHHHHcCCC--CcCCCCCcccccc
Q 042717 159 SVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLP--NKDRKDSQGICFL 221 (474)
Q Consensus 159 ~~L~~~~d~~kDQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp--~~~k~~S~diCFl 221 (474)
+.. +++ .....++||++++|.||+++|+.+|+| .+++|.|+++|.+
T Consensus 179 y~T-------------~~G----D~~~~~~Pl~~l~K~eV~~la~~lg~p~~i~~k~pSa~L~~l 226 (285)
T 3dpi_A 179 FFT-------------KFG----DGGADVLPLAGLTKRRVRALARMLGADEPLVLKTPTADLETL 226 (285)
T ss_dssp HHH-------------CCC----CCCCSBCTTTTCCHHHHHHHHHHTTCCHHHHTCCCHHHHGGG
T ss_pred ccc-------------ccC----CCceeEeeecCCcHHHHHHHHHHcCCCHHHhcCCCCCCcccC
Confidence 000 111 113579999999999999999999999 4789999999964
No 30
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=99.72 E-value=7.8e-18 Score=164.69 Aligned_cols=158 Identities=13% Similarity=0.128 Sum_probs=113.7
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHh
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKN 97 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~ 97 (474)
+++|+|++|||+||+|++++|.+.+.+|.++|++++.. .+++.++++++|+++||+++++.....+...
T Consensus 45 ~~~v~va~SGG~DS~vLL~ll~~~~~~v~vv~idtg~~-----------~~et~~~~~~~~~~~gi~~~v~~~~~~~~~~ 113 (252)
T 2o8v_A 45 PGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYL-----------FPETYRFIDELTDKLKLNLKVYRATESAAWQ 113 (252)
T ss_dssp CSCEEEECCCSTTHHHHHHHHHHHSTTCEEEECCCSCB-----------CHHHHHHHHHHHHHTTCEEEECCCSSCHHHH
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHhCCCCeEEEecCCCC-----------CHHHHHHHHHHHHHhCCceEEEcCCCCHHHH
Confidence 35899999999999999999999999999999987642 3678999999999999999999776422211
Q ss_pred hHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccc
Q 042717 98 VVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSH 177 (474)
Q Consensus 98 V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~ 177 (474)
+...- ..|..+ +++++ .|....|...|.+++++.|+++++|||++++. ..+..+ ..
T Consensus 114 ~~~~g-~~~~~~-~~~~~-~cc~~~K~~pl~~~l~~~~~~~~~tG~r~dds-------~~R~~l--------------~~ 169 (252)
T 2o8v_A 114 EARYG-KLWEQG-VEGIE-KYNDINKVEPMNRALKELNAQTWFAGLRREQS-------GSRANL--------------PV 169 (252)
T ss_dssp HHHTC-CGGGSH-HHHHH-HHHHHHTHHHHHHHHHHTTCSEEEECCCSTTT-------TCCTTS--------------CS
T ss_pred HHHcC-CccccC-CchHH-HHHHHHHHHHHHHHHHhcCCcEEEEecccccc-------cccccC--------------ce
Confidence 10000 011111 23454 45566788899999999999999999998742 111111 00
Q ss_pred cChhhhccccccccCCCHHHHHHHHHHcCCCCc
Q 042717 178 LSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK 210 (474)
Q Consensus 178 L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~ 210 (474)
+....-...++||.+|+|+||++|++++|||+.
T Consensus 170 ~~~~~~~~~i~PL~~wt~~dV~~y~~~~~lp~~ 202 (252)
T 2o8v_A 170 LAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYH 202 (252)
T ss_dssp EEESSSSEEECGGGSCCHHHHHHHHHHTTCCCC
T ss_pred eecCCCeEEEechhhCCHHHHHHHHHHcCCCCC
Confidence 111111257899999999999999999999984
No 31
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=99.70 E-value=2.9e-17 Score=180.16 Aligned_cols=165 Identities=15% Similarity=0.108 Sum_probs=115.1
Q ss_pred CCCeEEEEEccchhHHHHHHH--------HHHcCCc---------------------------------EEEEEEEcCCC
Q 042717 17 KGLKVAVLLSGGVDSSVALRL--------LHSAGHS---------------------------------CTAFYLKIWFQ 55 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~L--------Lke~G~e---------------------------------V~gv~~~~~~~ 55 (474)
+.++|+|+||||+||+++|.| ++..|.+ +++++|....
T Consensus 302 g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~m~~~~- 380 (634)
T 3ilv_A 302 RSKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQAKKITAVFLTTAYQSTRN- 380 (634)
T ss_dssp TCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCGGGCCSSCSSCTTSHHHHHHHHHHHEEEEEEECTT-
T ss_pred CCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhCchhhhhhhhcccccccccccccccccchhHhhhheeeeeecCCCC-
Confidence 456899999999999998887 3556887 8999997432
Q ss_pred CCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHhhhHHHHhcCCCCCcc----cccch--HHHHHHHHH
Q 042717 56 EDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPD----VLCNT--RIKFGAFMD 129 (474)
Q Consensus 56 ~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~~~i~~y~~G~tpNPc----i~Cnr--~iKf~~l~~ 129 (474)
++..+.++|+++|+.|||+++++|+.+.|.. .++.+.+.+ |++|+++ ..||. ++|+..++.
T Consensus 381 ----------ss~~~~~dA~~la~~LGi~~~~IdI~~~~~~-~~~~~~~~~--g~~p~~~~~~~~~~N~qaR~R~~~l~~ 447 (634)
T 3ilv_A 381 ----------SGDETYTSAKTLAESIGATFYNWSVDEEIEQ-YKATIENVI--ERPLTWEKDDITLQNIQARGRAPIIWM 447 (634)
T ss_dssp ----------CCSHHHHHHHHHHHHHTCEEEEEECHHHHHH-HHHHHHHHT--TSCCCTTTCHHHHHHHHHHTTHHHHHH
T ss_pred ----------CCHHHHHHHHHHHHHhCCcEEEEccHHHHHH-HHHHHHHhh--CCCcccccCcchhhhhhHHHHHHHHHH
Confidence 2467899999999999999999999876654 233333333 7887655 44553 355678888
Q ss_pred HHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccccChhhhccccccccCCCHHHHHHHHHHc----
Q 042717 130 AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQF---- 205 (474)
Q Consensus 130 ~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~---- 205 (474)
+|.+.|+.++.|||... +..+ +.....+....++||++++|+|||++|+.+
T Consensus 448 ~A~~~g~lvlgTgnksE--------------~~~G-----------y~T~ygD~~~~~~Pl~~l~KteVr~la~~l~~~~ 502 (634)
T 3ilv_A 448 LTNVKQALLITTSNRSE--------------GDVG-----------YATMDGDTAGGIAPIAGVDKDFIRSWLRWAEKNR 502 (634)
T ss_dssp HHHHHTCEEBCCCCHHH--------------HHTT-----------CSCTTTTTCSSBBTTTTSCHHHHHHHHHHHHHHS
T ss_pred HHHhcCCEEeccCchhh--------------HhhC-----------CccccCCcccCCcccCCCcHHHHHHHHHHHHHcC
Confidence 99999999999998532 1111 111112334678999999999999999999
Q ss_pred CCC----CcCCCCCccccc
Q 042717 206 DLP----NKDRKDSQGICF 220 (474)
Q Consensus 206 GLp----~~~k~~S~diCF 220 (474)
|+| ..++|.|+++-.
T Consensus 503 glp~l~~i~~k~pSaeL~p 521 (634)
T 3ilv_A 503 NQHGLHIVNKLAPTAELRP 521 (634)
T ss_dssp CCGGGSSCC----------
T ss_pred CCchHHHHcCCCCCcCcCc
Confidence 999 778999988755
No 32
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=99.65 E-value=1.4e-16 Score=173.38 Aligned_cols=157 Identities=14% Similarity=0.149 Sum_probs=112.0
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHc-C-CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSA-G-HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEY 94 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~-G-~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f 94 (474)
+.++|+|+||||+||+++|++++++ | ++|++++|.++. .+..+.++|+++|+.|||+++++|+++.|
T Consensus 325 g~~~vvvglSGGvDSsv~a~la~~alG~~~v~~v~m~~~~-----------~~~~~~~~A~~la~~lgi~~~~i~i~~~~ 393 (590)
T 3n05_A 325 GFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKY-----------SSDHSKGDAAELARRTGLNFRTVSIEPMF 393 (590)
T ss_dssp TCCCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCCSS-----------CCHHHHHHHHHHHHHHTCEEEECCSHHHH
T ss_pred CCCcEEEEcCCCHHHHHHHHHHHHHhCcccEEEEEECCCC-----------CCHHHHHHHHHHHHHcCCcEEEEEChHHH
Confidence 3468999999999999999999987 8 999999998653 25789999999999999999999998765
Q ss_pred HHhhHhhhHHHHhcCCCCCcccccc--hHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccc
Q 042717 95 WKNVVSYIIEEYRCGRTPNPDVLCN--TRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQT 172 (474)
Q Consensus 95 ~~~V~~~~i~~y~~G~tpNPci~Cn--r~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQs 172 (474)
... +..+. ..+....| ..+|+..++.+|.+.|+..|+|||.... . .+
T Consensus 394 ~~~-----~~~l~----~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~TGn~se~------------~--~G-------- 442 (590)
T 3n05_A 394 DAY-----MASLG----LTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSEL------------A--VG-------- 442 (590)
T ss_dssp HHH-----HHHHC----CCTHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCHHHH------------H--HT--------
T ss_pred HHH-----HHHhc----ccchhhhHHHHHHHHHHHHHHHHhcCCEEEeCCCHHHH------------h--cC--------
Confidence 432 22221 11111111 2367888899999999999999965321 0 11
Q ss_pred ccccccChhhhccccccccCCCHHHHHHHHHHcC-----------CCC--cCCCCCccc
Q 042717 173 YFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFD-----------LPN--KDRKDSQGI 218 (474)
Q Consensus 173 yfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~G-----------Lp~--~~k~~S~di 218 (474)
|+. ........++||++++|.||+++|+.+| +|. .+++.|.++
T Consensus 443 y~t---~~gd~~~~~~Pl~~l~K~eVr~la~~lg~~~~~~~~~~~ip~~i~~k~ps~~L 498 (590)
T 3n05_A 443 YST---LYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPPSAEL 498 (590)
T ss_dssp CCC---SSCTTSCSBCTTTTSCHHHHHHHHHHHHHHHHHTTCCCCSCHHHHTCC-----
T ss_pred chh---hcCCCccceeecCCCcHHHHHHHHHHhCcccccccccccChHHHhCCCCCCCC
Confidence 111 1112346789999999999999999998 663 457777775
No 33
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=99.60 E-value=2.3e-15 Score=152.59 Aligned_cols=165 Identities=16% Similarity=0.184 Sum_probs=108.6
Q ss_pred CeEEEEEccchhHHHHHHHHHHc----CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHH
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA----GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEY 94 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~----G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f 94 (474)
.+++|++|||+||+|+++++.+. +.++.++|++++.. .+++.++++++|+++||+++++.....+
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~-----------~~et~~~v~~~~~~~gi~l~v~~~~~~~ 115 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWK-----------FQEMYRFRDQMVEEMGLDLITHINPDGV 115 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCC-----------CHHHHHHHHHHHHTTTCCEEEECC----
T ss_pred CCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCC-----------CHHHHHHHHHHHHHcCCCEEEEeCchHH
Confidence 47999999999999999999987 67889999998642 3678999999999999999999875432
Q ss_pred HHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhh--cCC-----
Q 042717 95 WKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELS--KDK----- 167 (474)
Q Consensus 95 ~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~--~d~----- 167 (474)
... ...+ ..+|+..|. ..|...|.+++++.|++.++|||++++.. ....+... ++.
T Consensus 116 ~~G-----~~~~----~~~~~~cc~-~~K~~pL~~~l~e~g~~~i~tG~R~Des~-------~Ra~~~~~~~r~~~~~~d 178 (325)
T 1zun_A 116 AQG-----INPF----THGSAKHTD-IMKTEGLKQALDKHGFDAAFGGARRDEEK-------SRAKERVYSFRDSKHRWD 178 (325)
T ss_dssp -------------------CCHHHH-HHTHHHHHHHHHHHTCSEEECCCCTTSSG-------GGGGCCSEEEECTTCCBC
T ss_pred hcC-----CCcc----ccChHHHHH-HHHHHHHHHHHHHcCCCEEEEecccchhh-------hhhcccceeccccccccC
Confidence 110 0111 124554444 57888888999999999999999987421 11111110 111
Q ss_pred cccccccccccCh----hhhccccccccCCCHHHHHHHHHHcCCCCcC
Q 042717 168 VKDQTYFLSHLSQ----AQLKRLIFPLGCISKEEVRKFATQFDLPNKD 211 (474)
Q Consensus 168 ~kDQsyfL~~L~~----~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~ 211 (474)
.+.|.--++.+.. ......++||.+|+++||++|++++|||+..
T Consensus 179 ~~~~rp~l~~~~n~~~~~g~~~~i~PLl~wt~~dIw~Yi~~~~lp~~~ 226 (325)
T 1zun_A 179 PKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVP 226 (325)
T ss_dssp GGGCCCCCSSCCCCCCCTTCEEEECTTTTCCHHHHHHHHHHHTCCCCS
T ss_pred ccccCcchhhhccccccCCCeEEEEchhhCCHHHHHHHHHHhCCCcch
Confidence 0111100111100 0012358999999999999999999999843
No 34
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=99.54 E-value=2.1e-14 Score=139.06 Aligned_cols=183 Identities=17% Similarity=0.138 Sum_probs=118.0
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhh
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNV 98 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V 98 (474)
+|++|+||||+||+++|++|+++||+|+++++.++...+ +.+.+..+.+.++++|+.||||++++++..+.
T Consensus 5 MKvvvl~SGGkDSs~al~~l~~~G~eV~~L~~~~~~~~~-----s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~---- 75 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAIKNRFSVKFLVTMVSENEE-----SYMYHTINANLTDLQARALGIPLVKGFTQGEK---- 75 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEEECC-------------CCSSSHHHHHHHHHTCCEEEEEC--------
T ss_pred CEEEEEecCcHHHHHHHHHHHHcCCeEEEEEEEcCCCCC-----ccccCCccHHHHHHHHHHcCCCEEEEECCCCc----
Confidence 799999999999999999999999999999887754321 11223355778999999999999999986320
Q ss_pred HhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccccccc
Q 042717 99 VSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHL 178 (474)
Q Consensus 99 ~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L 178 (474)
+ ..+..|.+..++.|++.+++|.-... ....+.-+.+.
T Consensus 76 -----~-----------------~e~e~l~~~l~~~~i~~vv~Gdi~s~-------yqr~r~e~vc~------------- 113 (237)
T 3rjz_A 76 -----E-----------------KEVEDLKRVLSGLKIQGIVAGALASK-------YQRKRIEKVAK------------- 113 (237)
T ss_dssp ------------------------CHHHHHHHHTTSCCSEEECC---CC-------SHHHHHHHHHH-------------
T ss_pred -----h-----------------HHHHHHHHHHHhcCCcEEEECCcchH-------HHHHHHHHHHH-------------
Confidence 0 01344555666679999999987531 11222222111
Q ss_pred ChhhhccccccccCCCHHHHHHHHHHcCCCCcC---CCCCcccccccccchHHHHHhhhc--cCCCcEEeccCCceeeee
Q 042717 179 SQAQLKRLIFPLGCISKEEVRKFATQFDLPNKD---RKDSQGICFLGKIKFSEFVARHIG--EMEGVILEAETGDFLGKH 253 (474)
Q Consensus 179 ~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~---k~~S~diCFl~~~~~~~fL~~~~~--~~~G~ivd~~~g~~lG~H 253 (474)
.-++ ..++||+..+..++.+-.-+.|+...- ...--+.-|+++.--.+++.++.. .+.| + .++|+.
T Consensus 114 -~~gl-~~~~PLW~~d~~~Ll~e~i~~G~~aiiv~v~~~gL~~~~lG~~l~~~~~~~L~~l~~~~g--v-----d~cGEg 184 (237)
T 3rjz_A 114 -ELGL-EVYTPAWGRDAKEYMRELLNLGFKIMVVGVSAYGLDESWLGRILDESALEELITLNEKYK--V-----HVAGEG 184 (237)
T ss_dssp -HTTC-EEECSSSSCCHHHHHHHHHHTTCEEEEEEEESTTCCGGGTTCBCCHHHHHHHHHHHHHHC--C-----CTTCTT
T ss_pred -HcCC-EEEccccCCCHHHHHHHHHHCCCEEEEEEEecCCCChHHCCCccCHHHHHHHHHHHhhcC--c-----cccCCC
Confidence 1122 689999999999999888899987531 122223457775433345655432 1123 2 378999
Q ss_pred cceeeEee
Q 042717 254 WGFWFYTI 261 (474)
Q Consensus 254 ~G~~~yTi 261 (474)
..+|.+++
T Consensus 185 GEfhT~V~ 192 (237)
T 3rjz_A 185 GEFETFVL 192 (237)
T ss_dssp TTEEEEEE
T ss_pred ceeEEEEE
Confidence 88999885
No 35
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.7e-14 Score=140.30 Aligned_cols=154 Identities=12% Similarity=0.160 Sum_probs=109.0
Q ss_pred eEEEEEccchhHHHHHHHHHHcCC---cEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCC----CEEEEEcch
Q 042717 20 KVAVLLSGGVDSSVALRLLHSAGH---SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDV----PLEVVHLTD 92 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke~G~---eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGI----pl~vvd~~~ 92 (474)
+++|++|||+||+|+++++.+... ++.++|++++.. .+++.++++++|+++|+ +++++....
T Consensus 43 ~v~va~SGGkDS~vLL~ll~~~~~~~~~i~vv~iDtg~~-----------~~et~~~v~~~~~~~gl~~~~~l~v~~~~~ 111 (261)
T 2oq2_A 43 HLFQTTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTLHH-----------FPQTLTLKNEIEKKYYQPKNQTIHVYKPDG 111 (261)
T ss_dssp SEEEECCCCHHHHHHHHHHHHHTTTSCCCEEEEECCSCB-----------CHHHHHHHHHHHHHHTGGGTCCCEEECSTT
T ss_pred CEEEEecCCHHHHHHHHHHHHhCccCCCeeEEEecCCCC-----------CHHHHHHHHHHHHHhCCCCCCCeEEEecCC
Confidence 799999999999999999999865 889999998642 36789999999999999 999987642
Q ss_pred HHHHhhHhhhHHHHhcCC---CCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcc
Q 042717 93 EYWKNVVSYIIEEYRCGR---TPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVK 169 (474)
Q Consensus 93 ~f~~~V~~~~i~~y~~G~---tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~k 169 (474)
. .. +..+...+ |. ..+|+ .|....|...|.+++++.|++.++|||++++. .....+.
T Consensus 112 ~--~~-~~~~~~~~--G~~~~~~~~~-~cc~~~K~~pl~~~l~~~g~~~~~tG~R~dds-------~~R~~~~------- 171 (261)
T 2oq2_A 112 C--ES-EADFASKY--GDFLWEKDDD-KYDYLAKVEPAHRAYKELHISAVFTGRRKSQG-------SARSQLS------- 171 (261)
T ss_dssp C--SS-HHHHHHHH--CTTHHHHCHH-HHHHHHTHHHHHHHHHHTTCSEEECCCCGGGC-------GGGGGCC-------
T ss_pred c--cC-HHHHHHHh--CCCccccChH-HHHHHHhHHHHHHHHHHcCCCEEEEeccccch-------HHHccCC-------
Confidence 0 00 00111111 11 11354 35555777888889999999999999998742 1110000
Q ss_pred cccccccccCh-hhhccccccccCCCHHHHHHHHHHcCCCCc
Q 042717 170 DQTYFLSHLSQ-AQLKRLIFPLGCISKEEVRKFATQFDLPNK 210 (474)
Q Consensus 170 DQsyfL~~L~~-~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~ 210 (474)
++. ... .. ...++||.+|+++||++|++++|||+.
T Consensus 172 ----~~~-~~~~~~-~~ki~PL~~wt~~dV~~Yi~~~~lp~~ 207 (261)
T 2oq2_A 172 ----IIE-IDELNG-ILKINPLINWTFEQVKQYIDANNVPYN 207 (261)
T ss_dssp ----SEE-EETTTT-EEEECTTTTCCHHHHHHHHHHHTCCCC
T ss_pred ----cee-ecCCCC-eEEEechHhCCHHHHHHHHHHcCCCCC
Confidence 010 000 11 235899999999999999999999985
No 36
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=99.48 E-value=2e-14 Score=158.83 Aligned_cols=152 Identities=17% Similarity=0.149 Sum_probs=100.2
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHc----C---CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSA----G---HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVH 89 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~----G---~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd 89 (474)
+.++|+|++|||+||+++|++++++ | .+|++++|.... .++.+.++|+++|+.|||+|+++|
T Consensus 360 g~~~vvvglSGGvDSsvaa~l~~~a~~~lg~~~~~v~~v~m~~~~-----------~~~~~~~~A~~la~~lgi~~~~i~ 428 (680)
T 3sdb_A 360 DYPKVVIGVSGGLDSTHALIVATHAMDREGRPRSDILAFALPGFA-----------TGEHTKNNAIKLARALGVTFSEID 428 (680)
T ss_dssp TSCEEEEECCSSHHHHHHHHHHHHHHHHTTCCGGGEEEEECCC-------------------CHHHHHHHHHTCEEEECC
T ss_pred CCCcEEEEecCCccHHHHHHHHHHHHHHhCCCCceEEEEEECCCC-----------CCHHHHHHHHHHHHHcCCCEEEEE
Confidence 4568999999999999999888765 4 799999998532 245778999999999999999999
Q ss_pred cchHHHHhhHhhhHHHHhcCCCCCcccccc--hHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCC
Q 042717 90 LTDEYWKNVVSYIIEEYRCGRTPNPDVLCN--TRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDK 167 (474)
Q Consensus 90 ~~~~f~~~V~~~~i~~y~~G~tpNPci~Cn--r~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~ 167 (474)
+++.|.. .+..+.+.+..|.+++++..|| ..+|+..++.+|.+.|+..+.|||.... ..+...
T Consensus 429 i~~~~~~-~~~~l~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~A~~~g~lvlgTgn~sE~--------------~~Gy~T 493 (680)
T 3sdb_A 429 IGDTARL-MLHTIGHPYSVGEKVYDVTFENVQAGLRTDYLFRIANQRGGIVLGTGDLSEL--------------ALGWST 493 (680)
T ss_dssp CHHHHHH-HHHHC------------CHHHHHHHHHHHHHHHHHHHHHTEEEEECCCHHHH--------------HHTCSC
T ss_pred CHHHHHH-HHHHhchhhcCCCCCcchhHHHhhHHHHHHHHHHHHHHcCCEEEeCCcHHhH--------------hcCeee
Confidence 9876643 2333333444454446666666 4566778888999999988888876421 111110
Q ss_pred cccccccccccC-hhhhccccccccCCCHHHHHHHHHHc
Q 042717 168 VKDQTYFLSHLS-QAQLKRLIFPLGCISKEEVRKFATQF 205 (474)
Q Consensus 168 ~kDQsyfL~~L~-~~~L~~~i~PL~~ltK~EVr~lA~~~ 205 (474)
+. .+. ...+.||++++|.|||++|+.+
T Consensus 494 ----------~~~gD~-~~~~~Pl~~l~K~eVr~lar~l 521 (680)
T 3sdb_A 494 ----------YGVGDQ-MSHYNVNAGVPKTLIQHLIRWV 521 (680)
T ss_dssp ----------CSSSTT-CCSEETTTTSCHHHHHHHHHHH
T ss_pred ----------ccCCCc-cccccccCCCcHHHHHHHHHHH
Confidence 11 111 2347899999999999999988
No 37
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=99.35 E-value=4e-12 Score=125.70 Aligned_cols=157 Identities=15% Similarity=0.186 Sum_probs=106.2
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchH-HHHh
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDE-YWKN 97 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~-f~~~ 97 (474)
++|+|++| |+||+|+++++.+.+.++.++|++++.. .+++.++++++|+++||+++++..... +...
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~~~~i~vv~iDtg~~-----------~~et~~~v~~~~~~~gi~l~v~~~~~~~~~~~ 122 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKLNRNVKVFSLDTGRL-----------HPETYRFIDQVREHYGIAIDVLSPDPRLLEPL 122 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHHCTTCCEEEECCSCC-----------CHHHHHHHHHHHHHHTCCCEEECCCHHHHHHH
T ss_pred CCEEEEee-cHHHHHHHHHHHHhCCCceEEEEeCCCC-----------CHHHHHHHHHHHHHHCCeEEEEeCCccCHHHH
Confidence 68999999 9999999999999999999999998642 367899999999999999999877631 2211
Q ss_pred hHhhhHHHHhcCCC----CCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccc
Q 042717 98 VVSYIIEEYRCGRT----PNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTY 173 (474)
Q Consensus 98 V~~~~i~~y~~G~t----pNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsy 173 (474)
..+ .|.. .+++. |....|...|.+++. +++.++|||.+++.. .....+.... .|..+
T Consensus 123 -----~~~--~g~~~~~~~~~~~-cc~~~K~~pl~r~l~--~~~~~itG~r~dds~------~~R~~~~~~~---~d~~~ 183 (275)
T 2goy_A 123 -----VKE--KGLFSFYRDGHGE-CCGIRKIEPLKRKLA--GVRAWATGQRRDQSP------GTRSQVAVLE---IDGAF 183 (275)
T ss_dssp -----HHH--HCSCHHHHHCTHH-HHHHHTHHHHHHHHH--TCSEEECCCCGGGTT------SCSCCCCSEE---ECTTT
T ss_pred -----HHH--hCCCCccccCHHH-HHHHHHHHHHHHHHH--hcCchhcCchhhhhh------hhhhhCcccc---ccccc
Confidence 111 1110 13454 555567676766665 567999999987420 0000010000 00000
Q ss_pred cccccChhhhccccccccCCCHHHHHHHHHHcCCCCc
Q 042717 174 FLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK 210 (474)
Q Consensus 174 fL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~ 210 (474)
. ....+ ...++||.+|+++||++|++++|||+.
T Consensus 184 -~--~~~~g-~~~i~PL~~wt~~dV~~Yi~~~~lp~~ 216 (275)
T 2goy_A 184 -S--TPEKP-LYKFNPLSSMTSEEVWGYIRMLELPYN 216 (275)
T ss_dssp -C--CSSSC-CEEECTTTTCCHHHHHHHHHHTTCCCC
T ss_pred -c--cCCCC-eEEEechHhCCHHHHHHHHHHhCCCCC
Confidence 0 01112 247899999999999999999999984
No 38
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=99.21 E-value=5.6e-11 Score=119.35 Aligned_cols=136 Identities=13% Similarity=0.049 Sum_probs=94.3
Q ss_pred CeEEEEEccchhHHHHHHHHHHc----------------------CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHH
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA----------------------GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~----------------------G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~ 76 (474)
.+|+|++|||+||+|+++|+.+. +.++.++|++.+. ..++..+++++
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~-----------~fpet~~fv~~ 122 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEE-----------TFPTLENFVLE 122 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTT-----------CCHHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCC-----------CCHHHHHHHHH
Confidence 68999999999999999999874 4678899998653 25788999999
Q ss_pred HHHHcCCCEEEEEcchHHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHH-cCCCEEEEceecccccCccCCC
Q 042717 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISS-MEFDYVASGHYAKVVHSSADQE 155 (474)
Q Consensus 77 va~~LGIpl~vvd~~~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~-~Gad~IATGH~a~~~~~~~dd~ 155 (474)
+++++|++++++.....+.. .+ ...+.++++. -+.+.|++|+..++...
T Consensus 123 ~~~~ygl~l~v~~~~~~~~~------------------------~l-~~~~~~~~k~~p~~~aii~G~Rrdds~~----- 172 (306)
T 2wsi_A 123 TSERYCLSLYESQRQSGASV------------------------NM-ADAFRDFIKIYPETEAIVIGIRHTDPFG----- 172 (306)
T ss_dssp HHHHTTEEEEECCC-----C------------------------CH-HHHHHHHHHHCTTCCEEECCCCCCSSSC-----
T ss_pred HHHHcCCCEEEEeCCccccc------------------------cH-HHHHHHHHhhCCCCcEEEEEEecccccc-----
Confidence 99999999988876422100 01 1233444554 37889999999874210
Q ss_pred chhhHHhhhcCCcccccccccccChhhh--ccccccccCCCHHHHHHHHHHcCCCCc
Q 042717 156 YKPSVLELSKDKVKDQTYFLSHLSQAQL--KRLIFPLGCISKEEVRKFATQFDLPNK 210 (474)
Q Consensus 156 ~~~~~L~~~~d~~kDQsyfL~~L~~~~L--~~~i~PL~~ltK~EVr~lA~~~GLp~~ 210 (474)
. +. ..+.. .. ... ...++||.+|++.||+.|++.+|||+.
T Consensus 173 --r-----~l------~~~~~-~d-~~~p~~~ri~PL~dWt~~DVw~Yi~~~~lpy~ 214 (306)
T 2wsi_A 173 --E-----AL------KPIQR-TD-SNWPDFMRLQPLLHWDLTNIWSFLLYSNEPIC 214 (306)
T ss_dssp --C-----CC------CSEEE-CC-TTSCSCEEECTTTTCCHHHHHHHHHHHCCCBC
T ss_pred --c-----cc------Cceec-cC-CCCCCcEEEeChHHCCHHHHHHHHHHcCCCCC
Confidence 0 00 00000 00 110 135899999999999999999999983
No 39
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=99.01 E-value=4.7e-10 Score=119.88 Aligned_cols=113 Identities=15% Similarity=0.149 Sum_probs=86.3
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHh
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKN 97 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~ 97 (474)
..+|++++|||+||++++.++++++.++.++++.... ..|..+|+++|+++|++|++++++.+ +
T Consensus 238 d~~v~v~LSGGlDSs~vaala~~~~~~~~~~t~~~~~-------------~~E~~~A~~vA~~lg~~h~~i~~~~~---~ 301 (503)
T 1q15_A 238 FDTVGIPLSGGLDSSLVTALASRHFKKLNTYSIGTEL-------------SNEFEFSQQVADALGTHHQMKILSET---E 301 (503)
T ss_dssp CSEEEEECCSSHHHHHHHHHHTTTCSEEEEEEEEETT-------------BCCHHHHHHHHHHHTCEEEEEEECHH---H
T ss_pred CCcEEEECCCCHHHHHHHHHHHHhCCCcEEEEEeCCC-------------ccHHHHHHHHHHHhCCceEEEECCHH---H
Confidence 4579999999999999999999998888888886531 24688999999999999999999863 1
Q ss_pred hHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccc
Q 042717 98 VVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVV 148 (474)
Q Consensus 98 V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~ 148 (474)
+++.+.+......+|+|+..|+. +.+..+.+.| +.|+..+.||+.+|..
T Consensus 302 ~~~~l~~~~~~~~~~~p~~~~~~-~~~~~l~~~a-~~~~~VvltG~GaDEl 350 (503)
T 1q15_A 302 VINGIIESIYYNEIFDGLSAEIQ-SGLFNVYRQA-QGQVSCMLTGYGSDLL 350 (503)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHH-BTTBSEEECCTTHHHH
T ss_pred HHHHHHHHHHHhcCCCcccchhH-HHHHHHHHHH-HCCCCEEEeCCChhhh
Confidence 22222222222346889988886 4455666777 5799999999998753
No 40
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=98.98 E-value=6e-10 Score=119.34 Aligned_cols=112 Identities=20% Similarity=0.251 Sum_probs=85.3
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchH-HHH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDE-YWK 96 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~-f~~ 96 (474)
..+|++++|||+||++++.++++.+.++.++++.... ..|..+|+++|+.+|++|++++++.+ +.+
T Consensus 241 d~~vgv~LSGGlDSS~vaala~~~~~~v~tfti~~~~-------------~~E~~~A~~vA~~lg~~h~~i~i~~~~~~~ 307 (513)
T 1jgt_A 241 GDTPLVVLSGGIDSSGVAACAHRAAGELDTVSMGTDT-------------SNEFREARAVVDHLRTRHREITIPTTELLA 307 (513)
T ss_dssp TCCCEEECCSSHHHHHHHHHHHHHHSSCEEEEEECSS-------------CCCHHHHHHHHHHHTCEEEEEECCHHHHHT
T ss_pred CCcEEEECCCcHHHHHHHHHHHHhCCCceEEEcCCCC-------------CCHHHHHHHHHHHhCCCcEEEECCHHHHHH
Confidence 4589999999999999999999887778888886521 25689999999999999999999863 443
Q ss_pred hhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccc
Q 042717 97 NVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVV 148 (474)
Q Consensus 97 ~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~ 148 (474)
.+..++.. ..+|+||..|+. +.+..+.+.+ +.|++.++|||.+|..
T Consensus 308 -~l~~~~~~---~~~~~p~~~~~~-~~~~~l~~~a-~~g~~VvltG~GaDEl 353 (513)
T 1jgt_A 308 -QLPYAVWA---SESVDPDIIEYL-LPLTALYRAL-DGPERRILTGYGADIP 353 (513)
T ss_dssp -THHHHHHH---HCCCCHHHHHHH-HHHHHHHHHC-CSSCCEEECCTTTHHH
T ss_pred -HHHHHHHH---hCCCCcccchhH-HHHHHHHHHH-HcCCCEEEeCCChhhc
Confidence 23322222 236789988876 4445555555 6899999999998753
No 41
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=98.95 E-value=2.5e-09 Score=115.55 Aligned_cols=113 Identities=21% Similarity=0.238 Sum_probs=82.1
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcCCc--------------EEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCC
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAGHS--------------CTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDV 83 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G~e--------------V~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGI 83 (474)
..+|.|+||||+||++++.++++.+.+ +.++++... ...|...|+++|+.||+
T Consensus 226 dvpvgv~LSGGlDSS~iaala~~~~~~~~~~~~~~~a~~~~l~tfsig~~-------------~~~E~~~A~~vA~~lg~ 292 (553)
T 1ct9_A 226 DVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLP-------------GSPDLKAAQEVANHLGT 292 (553)
T ss_dssp SSCEEEECCSSHHHHHHHHHHHHHC----------------CEEEEEEST-------------TCHHHHHHHHHHHHHTC
T ss_pred CCceEEeCCCCccHHHHHHHHHHhhccccccccccccccCceeEEEecCC-------------CCcHHHHHHHHHHHhCC
Confidence 457999999999999999999987654 566666431 12689999999999999
Q ss_pred CEEEEEcchHHHHhhHhhhHHHHhcCCCCCc-ccccchHHHHHHHHHHHHHcCCCEEEEceecccc
Q 042717 84 PLEVVHLTDEYWKNVVSYIIEEYRCGRTPNP-DVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVV 148 (474)
Q Consensus 84 pl~vvd~~~~f~~~V~~~~i~~y~~G~tpNP-ci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~ 148 (474)
+|++++++.+-..+.+..++..+ .+|++ |+.|. +.+..+.+.|++.|++.|+|||.+|..
T Consensus 293 ~h~~i~~~~~~~~~~l~~~i~~~---~~~~~~~~~~~--~~~~~l~~~a~~~g~~vvLsG~GaDEl 353 (553)
T 1ct9_A 293 VHHEIHFTVQEGLDAIRDVIYHI---ETYDVTTIRAS--TPMYLMSRKIKAMGIKMVLSGEGSDEV 353 (553)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHH---CCCCHHHHHHH--HHHHHHHHHHHHTTCCEEECCTTHHHH
T ss_pred CCEEEECCHHHHHHHHHHHHHHh---cCCCcccchHH--HHHHHHHHHHHHcCCeEEEECCCchhc
Confidence 99999998642223444444433 24654 54442 345567788889999999999998854
No 42
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=98.78 E-value=1.4e-08 Score=110.03 Aligned_cols=149 Identities=15% Similarity=0.125 Sum_probs=101.4
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHc-C-CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSA-G-HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEY 94 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~-G-~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f 94 (474)
+.++++|++|||+||+++|.++.+. | .+|++++|.... +++...++|+.+|+.||+.++.+++.+.+
T Consensus 299 g~~~~vlglSGGiDSal~~~la~~alg~~~v~~v~mp~~~-----------ts~~t~~~a~~la~~lg~~~~~i~i~~~~ 367 (565)
T 4f4h_A 299 GFPGAIIGLSGGVDSALVLAVAVDALGAERVRAVMMPSRY-----------TAGISTTDAADMARRVGVRYDEIAIAPMF 367 (565)
T ss_dssp TCCCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCCTT-----------CCHHHHHHHHHHHHHHTCEEEECCCHHHH
T ss_pred CCCcEEEecCCCccHHHHHHHHHHHhCCccEEEEeccccc-----------cccchHHHHHHHHHHhCCceeeeecchHH
Confidence 4568999999999999999998776 4 679999986432 36788999999999999999999998644
Q ss_pred HHhhHhhhHHHHhc--CCCCCccc--ccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccc
Q 042717 95 WKNVVSYIIEEYRC--GRTPNPDV--LCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKD 170 (474)
Q Consensus 95 ~~~V~~~~i~~y~~--G~tpNPci--~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kD 170 (474)
.. +...... +....--. .-..++|...|+.+|.+.|.=.+.||+-. | +..+.-
T Consensus 368 ~~-----~~~~~~~~~~~~~~d~~~eN~qaR~R~~~l~~~an~~g~lvlgTgn~s-----------E---~a~Gy~---- 424 (565)
T 4f4h_A 368 DA-----FRASLAAEFAGLAEDATEENIQARIRGTLLMALSNKFGSIVLTTGNKS-----------E---MAVGYC---- 424 (565)
T ss_dssp HH-----HHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHH-----------H---HHHTCS----
T ss_pred HH-----HHHHhhhcccCccchhhHhhhcchhhHHHHHHHHhhcCCcccCCCchh-----------h---Hhhccc----
Confidence 32 1121111 11111001 11234667788899999998888887532 1 122210
Q ss_pred ccccccccChhhhccccccccCCCHHHHHHHHHHcC
Q 042717 171 QTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFD 206 (474)
Q Consensus 171 QsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~G 206 (474)
.+. .....-+.|+++++|.+|+++++.++
T Consensus 425 ------T~~-Gd~~~~~~pi~~l~Kt~v~~l~~~~~ 453 (565)
T 4f4h_A 425 ------TLY-GDMAGGFAVIKDIAKTLVYRLCRYRN 453 (565)
T ss_dssp ------CTT-TTTCSSEETTTTCCHHHHHHHHHHHH
T ss_pred ------ccc-CCcccCchhccCccHHHHHHHHHHHh
Confidence 011 11235678999999999999999866
No 43
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=98.48 E-value=1.1e-06 Score=87.82 Aligned_cols=134 Identities=13% Similarity=0.073 Sum_probs=88.1
Q ss_pred CeEEEEEccchhHHHHHHHHHHc----------------------CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHH
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA----------------------GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~----------------------G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~ 76 (474)
.++++++|||+||+|+++|+.+. ..++-.+|++++.. .++..+++.+
T Consensus 59 ~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~-----------FpET~ef~d~ 127 (308)
T 3fwk_A 59 GEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDT-----------FKTLENFIEE 127 (308)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTC-----------CHHHHHHHHH
T ss_pred CCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCC-----------CHHHHHHHHH
Confidence 67999999999999999999774 13677788887642 4788999999
Q ss_pred HHHHcCCCEEEEEcchHHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHc-CCCEEEEceecccccCccCCC
Q 042717 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSM-EFDYVASGHYAKVVHSSADQE 155 (474)
Q Consensus 77 va~~LGIpl~vvd~~~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~-Gad~IATGH~a~~~~~~~dd~ 155 (474)
+++++|++++++.-.. + +. ++ ..+.++.+.. +++.++||-..+. +. .
T Consensus 128 ~~~~ygL~L~v~~p~~----------------~--~~--------~~-~~cc~~~K~~P~~~AwitG~RR~e--~~---R 175 (308)
T 3fwk_A 128 TSLRYSLSLYESDRDK----------------C--ET--------MA-EAFETFLQVFPETKAIVIGIRHTD--PF---G 175 (308)
T ss_dssp HHHHTTEEEEECCTTS----------------C--CC--------HH-HHHHHHHHHCTTCCEEECCCCTTS--TT---C
T ss_pred HHHHhCCcEEEeCCCC----------------C--HH--------HH-HHHHHHHHhCCCCCEEEEEeecCC--cc---c
Confidence 9999999887764321 0 00 11 2233333444 6899999987652 10 0
Q ss_pred chhhHHhhhcCCcccccccccccCh--hhhccccccccCCCHHHHHHHHHHcCCCCc
Q 042717 156 YKPSVLELSKDKVKDQTYFLSHLSQ--AQLKRLIFPLGCISKEEVRKFATQFDLPNK 210 (474)
Q Consensus 156 ~~~~~L~~~~d~~kDQsyfL~~L~~--~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~ 210 (474)
.. + ..| ..-.. ..+ -.++||.+|+..||..|.++++||+.
T Consensus 176 a~---l----------~~~-e~~d~~w~~~-iKVnPL~dWT~~DVW~YI~~~~LPyn 217 (308)
T 3fwk_A 176 EH---L----------KPI-QKTDANWPDF-YRLQPLLHWNLANIWSFLLYSNEPIC 217 (308)
T ss_dssp TT---C----------CSE-EECCTTSCSC-EEECTTTTCCHHHHHHHHHHHTCCCC
T ss_pred CC---C----------Cee-eccCCCCCCe-EEEechhhCCHHHHHHHHHHcCCCCC
Confidence 00 0 000 00000 011 35799999999999999999999984
No 44
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=82.87 E-value=3.2 Score=38.98 Aligned_cols=87 Identities=23% Similarity=0.219 Sum_probs=54.8
Q ss_pred CCCCeEEEEEccchhHHHHHHHHHHc----CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcc
Q 042717 16 QKGLKVAVLLSGGVDSSVALRLLHSA----GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLT 91 (474)
Q Consensus 16 ~~~~kVlValSGGvDSsvaa~LLke~----G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~ 91 (474)
...+||+|..||.--.+.+ ++... +++|.+|.-+. + ..+.+.|+++|||++..+..
T Consensus 10 ~~~~ri~vl~SG~gsnl~a--ll~~~~~~~~~eI~~Vis~~-----------------~-a~~~~~A~~~gIp~~~~~~~ 69 (215)
T 3da8_A 10 SAPARLVVLASGTGSLLRS--LLDAAVGDYPARVVAVGVDR-----------------E-CRAAEIAAEASVPVFTVRLA 69 (215)
T ss_dssp CSSEEEEEEESSCCHHHHH--HHHHSSTTCSEEEEEEEESS-----------------C-CHHHHHHHHTTCCEEECCGG
T ss_pred CCCcEEEEEEeCChHHHHH--HHHHHhccCCCeEEEEEeCC-----------------c-hHHHHHHHHcCCCEEEeCcc
Confidence 3446899999998433333 33322 34777765431 1 23678899999999998753
Q ss_pred hHHHHhhHhhhHHHHhcCCCCCcccccchHHHH-HHHHHHHHHcCCCEEEEceeccc
Q 042717 92 DEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKF-GAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 92 ~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf-~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
+ |.. + ..| ..+.+..++.++|+++...|.++
T Consensus 70 ~-~~~-----------------------r-~~~d~~~~~~l~~~~~Dlivlagy~~i 101 (215)
T 3da8_A 70 D-HPS-----------------------R-DAWDVAITAATAAHEPDLVVSAGFMRI 101 (215)
T ss_dssp G-SSS-----------------------H-HHHHHHHHHHHHTTCCSEEEEEECCSC
T ss_pred c-ccc-----------------------h-hhhhHHHHHHHHhhCCCEEEEcCchhh
Confidence 1 100 1 112 33566777889999999888765
No 45
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=81.66 E-value=7.3 Score=38.43 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=56.1
Q ss_pred CCCeEEEEEccchhHHHHHHHHH-Hc---CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcch
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLH-SA---GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTD 92 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLk-e~---G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~ 92 (474)
..+||+|..||. +|.+.+.+-. +. +.+|.+|.-+.. + ++.+|+++|||++.++.+.
T Consensus 104 ~~~ri~vl~Sg~-g~nl~~ll~~~~~g~l~~~I~~Visn~~----------------~---~~~~A~~~gIp~~~~~~~~ 163 (302)
T 3o1l_A 104 QKKRVVLMASRE-SHCLADLLHRWHSDELDCDIACVISNHQ----------------D---LRSMVEWHDIPYYHVPVDP 163 (302)
T ss_dssp SCCEEEEEECSC-CHHHHHHHHHHHTTCSCSEEEEEEESSS----------------T---THHHHHTTTCCEEECCCCS
T ss_pred CCcEEEEEEeCC-chhHHHHHHHHHCCCCCcEEEEEEECcH----------------H---HHHHHHHcCCCEEEcCCCc
Confidence 357899999998 5654333322 23 367877766431 1 3467999999999886531
Q ss_pred HHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccc
Q 042717 93 EYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVV 148 (474)
Q Consensus 93 ~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~ 148 (474)
. ++.---..+.+..++.++|+|+..-|.++.
T Consensus 164 ~-------------------------~r~~~~~~~~~~l~~~~~DliVlagym~IL 194 (302)
T 3o1l_A 164 K-------------------------DKEPAFAEVSRLVGHHQADVVVLARYMQIL 194 (302)
T ss_dssp S-------------------------CCHHHHHHHHHHHHHTTCSEEEESSCCSCC
T ss_pred C-------------------------CHHHHHHHHHHHHHHhCCCEEEHhHhhhhc
Confidence 0 000001345677788899999999887753
No 46
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=79.44 E-value=5.2 Score=37.48 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=53.2
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcC---CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAG---HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDE 93 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G---~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~ 93 (474)
..+||+|.+||.---+.++.-..+.| ++|.+|.-+... + .+.+.|+++|||+++++...
T Consensus 7 ~~~ri~vl~SG~gsnl~all~~~~~~~~~~~I~~Vis~~~~----------a-------~~l~~A~~~gIp~~~~~~~~- 68 (215)
T 3kcq_A 7 KELRVGVLISGRGSNLEALAKAFSTEESSVVISCVISNNAE----------A-------RGLLIAQSYGIPTFVVKRKP- 68 (215)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHTCCC-CSEEEEEEEESCTT----------C-------THHHHHHHTTCCEEECCBTT-
T ss_pred CCCEEEEEEECCcHHHHHHHHHHHcCCCCcEEEEEEeCCcc----------h-------HHHHHHHHcCCCEEEeCccc-
Confidence 34689999999743333332222233 578777664311 0 13577999999999886531
Q ss_pred HHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceeccc
Q 042717 94 YWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 94 f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
|. -..+.+..++.++|+++...|.++
T Consensus 69 ~~----------------------------~~~~~~~L~~~~~Dlivlagy~~I 94 (215)
T 3kcq_A 69 LD----------------------------IEHISTVLREHDVDLVCLAGFMSI 94 (215)
T ss_dssp BC----------------------------HHHHHHHHHHTTCSEEEESSCCSC
T ss_pred CC----------------------------hHHHHHHHHHhCCCEEEEeCCceE
Confidence 00 033456667789999999888765
No 47
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=78.73 E-value=11 Score=32.33 Aligned_cols=100 Identities=11% Similarity=-0.011 Sum_probs=58.8
Q ss_pred CCeEEEEEcc-chhHHHHHHHH----HHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcch
Q 042717 18 GLKVAVLLSG-GVDSSVALRLL----HSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTD 92 (474)
Q Consensus 18 ~~kVlValSG-GvDSsvaa~LL----ke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~ 92 (474)
-++|+|++.| ...|.-++..+ +..+-+++.+|+........... .-...+.++.+.+.++..|+++.+.-..
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~g~~~~~~~~v- 100 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTKDED--IIEAKETLSWAVSIIRKEGAEGEEHLLV- 100 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSCHHH--HHHHHHHHHHHHHHHHHTTCCEEEEEEE-
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcccHHH--HHHHHHHHHHHHHHHHhcCCCceEEEEe-
Confidence 3589999999 88887665544 33488999999864321100000 0001123444555566667766542110
Q ss_pred HHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecc
Q 042717 93 EYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAK 146 (474)
Q Consensus 93 ~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~ 146 (474)
..|. . ...+.++|++.++|.|+.|.+..
T Consensus 101 --------------~~G~-----------~-~~~I~~~a~~~~~DLIV~G~~g~ 128 (155)
T 3dlo_A 101 --------------RGKE-----------P-PDDIVDFADEVDAIAIVIGIRKR 128 (155)
T ss_dssp --------------SSSC-----------H-HHHHHHHHHHTTCSEEEEECCEE
T ss_pred --------------cCCC-----------H-HHHHHHHHHHcCCCEEEECCCCC
Confidence 0121 1 35678899999999999998753
No 48
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=78.72 E-value=8.7 Score=31.91 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=26.5
Q ss_pred CeEEEEEccchhHHHHHHHH----HHcCCcEEEEEEEc
Q 042717 19 LKVAVLLSGGVDSSVALRLL----HSAGHSCTAFYLKI 52 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LL----ke~G~eV~gv~~~~ 52 (474)
++|+|++.|...|.-++..+ +..+-+++.+|+..
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~ 40 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFK 40 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEEC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 68999999999887665544 34588999999864
No 49
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=77.58 E-value=5.5 Score=37.11 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=55.8
Q ss_pred CeEEEEEccchhHHHHHH-HHHHc--CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHH
Q 042717 19 LKVAVLLSGGVDSSVALR-LLHSA--GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~-LLke~--G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~ 95 (474)
+||+|.+||.-+-+.++. .+.+. +++|.+|..+.. -..+.+.|+++|||+++++... |.
T Consensus 4 ~ki~vl~sG~g~~~~~~l~~l~~~~l~~~I~~Vit~~~-----------------~~~v~~~A~~~gIp~~~~~~~~-~~ 65 (212)
T 3av3_A 4 KRLAVFASGSGTNFQAIVDAAKRGDLPARVALLVCDRP-----------------GAKVIERAARENVPAFVFSPKD-YP 65 (212)
T ss_dssp EEEEEECCSSCHHHHHHHHHHHTTCCCEEEEEEEESST-----------------TCHHHHHHHHTTCCEEECCGGG-SS
T ss_pred cEEEEEEECCcHHHHHHHHHHHhCCCCCeEEEEEeCCC-----------------CcHHHHHHHHcCCCEEEeCccc-cc
Confidence 589999999876555443 23333 578887765421 0147788999999998876531 11
Q ss_pred HhhHhhhHHHHhcCCCCCcccccchHHHH-HHHHHHHHHcCCCEEEEceeccc
Q 042717 96 KNVVSYIIEEYRCGRTPNPDVLCNTRIKF-GAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tpNPci~Cnr~iKf-~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
. + -.| ..+.+..++.+.|+++...|..+
T Consensus 66 ~-----------------------~-~~~~~~~~~~l~~~~~Dliv~a~y~~i 94 (212)
T 3av3_A 66 S-----------------------K-AAFESEILRELKGRQIDWIALAGYMRL 94 (212)
T ss_dssp S-----------------------H-HHHHHHHHHHHHHTTCCEEEESSCCSC
T ss_pred c-----------------------h-hhhHHHHHHHHHhcCCCEEEEchhhhh
Confidence 0 0 012 23456667789999999888764
No 50
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=77.42 E-value=15 Score=30.28 Aligned_cols=33 Identities=9% Similarity=0.092 Sum_probs=25.6
Q ss_pred CeEEEEEccchhHHHHHHHH----HHcCCcEEEEEEE
Q 042717 19 LKVAVLLSGGVDSSVALRLL----HSAGHSCTAFYLK 51 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LL----ke~G~eV~gv~~~ 51 (474)
++|+|++.|...|.-++..+ +..|-+++.+|+.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~ 39 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVD 39 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEE
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEe
Confidence 68999999999987665433 3447899999886
No 51
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=77.14 E-value=6.8 Score=36.71 Aligned_cols=89 Identities=15% Similarity=0.187 Sum_probs=55.4
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHc--CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSA--GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEY 94 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~--G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f 94 (474)
..+||+|..||.---+-++.-..+. +++|.+|..+... ..+.+.|+++|||+++++... |
T Consensus 4 ~~~riavl~SG~Gsnl~all~~~~~~~~~eI~~Vis~~~~-----------------a~~~~~A~~~gIp~~~~~~~~-~ 65 (215)
T 3tqr_A 4 EPLPIVVLISGNGTNLQAIIGAIQKGLAIEIRAVISNRAD-----------------AYGLKRAQQADIPTHIIPHEE-F 65 (215)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHTTCSEEEEEEEESCTT-----------------CHHHHHHHHTTCCEEECCGGG-S
T ss_pred CCcEEEEEEeCCcHHHHHHHHHHHcCCCCEEEEEEeCCcc-----------------hHHHHHHHHcCCCEEEeCccc-c
Confidence 3468999999974333333323333 4677777664211 123578999999999887531 1
Q ss_pred HHhhHhhhHHHHhcCCCCCcccccchHHHH-HHHHHHHHHcCCCEEEEceeccc
Q 042717 95 WKNVVSYIIEEYRCGRTPNPDVLCNTRIKF-GAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 95 ~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf-~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
. ++ ..| ..+.+..++.++|.++...|.++
T Consensus 66 ~-----------------------~r-~~~d~~~~~~l~~~~~Dliv~agy~~i 95 (215)
T 3tqr_A 66 P-----------------------SR-TDFESTLQKTIDHYDPKLIVLAGFMRK 95 (215)
T ss_dssp S-----------------------SH-HHHHHHHHHHHHTTCCSEEEESSCCSC
T ss_pred C-----------------------ch-hHhHHHHHHHHHhcCCCEEEEccchhh
Confidence 0 01 112 34567778889999999888764
No 52
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=76.43 E-value=11 Score=35.11 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=54.9
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcC---CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAG---HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEY 94 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G---~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f 94 (474)
.+||+|.+||.---+.++.-..+.| ++|.+|..+... + .+.+.|+++|||+++++... |
T Consensus 7 ~~ri~vl~SG~gsnl~all~~~~~~~l~~~I~~Visn~~~----------a-------~~l~~A~~~gIp~~~~~~~~-~ 68 (209)
T 4ds3_A 7 RNRVVIFISGGGSNMEALIRAAQAPGFPAEIVAVFSDKAE----------A-------GGLAKAEAAGIATQVFKRKD-F 68 (209)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHTSTTCSEEEEEEEESCTT----------C-------THHHHHHHTTCCEEECCGGG-S
T ss_pred CccEEEEEECCcHHHHHHHHHHHcCCCCcEEEEEEECCcc----------c-------HHHHHHHHcCCCEEEeCccc-c
Confidence 3589999999854333333333333 578777664311 0 13578999999999987531 1
Q ss_pred HHhhHhhhHHHHhcCCCCCcccccchHHHH-HHHHHHHHHcCCCEEEEceeccc
Q 042717 95 WKNVVSYIIEEYRCGRTPNPDVLCNTRIKF-GAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 95 ~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf-~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
.. + ..| ..+.+..++.++|+++...|.++
T Consensus 69 ~~-----------------------r-~~~d~~~~~~l~~~~~Dliv~agy~~i 98 (209)
T 4ds3_A 69 AS-----------------------K-EAHEDAILAALDVLKPDIICLAGYMRL 98 (209)
T ss_dssp SS-----------------------H-HHHHHHHHHHHHHHCCSEEEESSCCSC
T ss_pred CC-----------------------H-HHHHHHHHHHHHhcCCCEEEEeccccC
Confidence 00 0 012 34556677789999999888765
No 53
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=76.41 E-value=7.8 Score=32.26 Aligned_cols=75 Identities=16% Similarity=0.063 Sum_probs=48.8
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHc----CCcEEEEEEEcCCCCCc-ccccC--CCC-CHHhHHHHHHHHHHcCCCEEEE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSA----GHSCTAFYLKIWFQEDF-ENFWT--ECP-WEEDMKYAKAVCDQVDVPLEVV 88 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~----G~eV~gv~~~~~~~~~~-~~~~~--~c~-s~~d~~~a~~va~~LGIpl~vv 88 (474)
+.+||++.++||.=|++++.-+++. |.++...........+. ..++- -.+ -.-..+..++.|+..|||..++
T Consensus 5 ~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV~y~~~~ik~~~~~~~ipV~vI 84 (108)
T 3nbm_A 5 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVAT 84 (108)
T ss_dssp CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCTTTGGGCSEEEECGGGGGGHHHHHHHHTTTTCEEEEC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHHhhccCCCEEEEChHHHHHHHHHHHHhhhcCCcEEEe
Confidence 4578999999999998888777654 88877665544321110 00000 001 1224677888899999999999
Q ss_pred Ecc
Q 042717 89 HLT 91 (474)
Q Consensus 89 d~~ 91 (474)
|..
T Consensus 85 ~~~ 87 (108)
T 3nbm_A 85 RGM 87 (108)
T ss_dssp CHH
T ss_pred CHH
Confidence 863
No 54
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=76.06 E-value=9 Score=36.14 Aligned_cols=88 Identities=16% Similarity=0.190 Sum_probs=55.1
Q ss_pred CCeEEEEEccchhHHHHHHH-HHHc--CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHH
Q 042717 18 GLKVAVLLSGGVDSSVALRL-LHSA--GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEY 94 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~L-Lke~--G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f 94 (474)
.+||++.+||.-+-+.++.- +.+. +++|.+|..+.. + ..+.+.|+++|||+++++... |
T Consensus 22 ~~rI~~l~SG~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~---~--------------~~~~~~A~~~gIp~~~~~~~~-~ 83 (229)
T 3auf_A 22 MIRIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDRA---D--------------AYGLERARRAGVDALHMDPAA-Y 83 (229)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHTTSSSEEEEEEEESST---T--------------CHHHHHHHHTTCEEEECCGGG-S
T ss_pred CcEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEcCCC---c--------------hHHHHHHHHcCCCEEEECccc-c
Confidence 35899999998655444332 2332 468887765421 0 135788999999998876531 1
Q ss_pred HHhhHhhhHHHHhcCCCCCcccccchHHHH-HHHHHHHHHcCCCEEEEceeccc
Q 042717 95 WKNVVSYIIEEYRCGRTPNPDVLCNTRIKF-GAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 95 ~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf-~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
.. + -.| ..+.+..++.+.|+|+...|..+
T Consensus 84 ~~-----------------------r-~~~~~~~~~~l~~~~~Dliv~agy~~I 113 (229)
T 3auf_A 84 PS-----------------------R-TAFDAALAERLQAYGVDLVCLAGYMRL 113 (229)
T ss_dssp SS-----------------------H-HHHHHHHHHHHHHTTCSEEEESSCCSC
T ss_pred cc-----------------------h-hhccHHHHHHHHhcCCCEEEEcChhHh
Confidence 10 0 012 23456667789999999888764
No 55
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=75.82 E-value=35 Score=32.06 Aligned_cols=91 Identities=12% Similarity=-0.004 Sum_probs=63.3
Q ss_pred CCCCeEEEEEccchhHHHHHHHHH----HcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcc
Q 042717 16 QKGLKVAVLLSGGVDSSVALRLLH----SAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLT 91 (474)
Q Consensus 16 ~~~~kVlValSGGvDSsvaa~LLk----e~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~ 91 (474)
...++|+|++.|...|.-++..+. ..+-+++.+|+.... ...+.++.+.+.++..|++....-.
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~-----------~~~~~l~~~~~~l~~~~~~~~~~~~- 235 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDG-----------DKTADLRVMEEVIGAEGIEVHVHIE- 235 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSS-----------CCHHHHHHHHHHHHHTTCCEEEEEE-
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCc-----------hHHHHHHHHHHHHHHcCCcEEEEEe-
Confidence 345789999999988876665443 347889888885321 0345677777788888988543221
Q ss_pred hHHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecc
Q 042717 92 DEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAK 146 (474)
Q Consensus 92 ~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~ 146 (474)
.|. . ...+.+++++.++|.|+.|.+..
T Consensus 236 ----------------~g~-----------~-~~~I~~~a~~~~~dLlV~G~~~~ 262 (294)
T 3loq_A 236 ----------------SGT-----------P-HKAILAKREEINATTIFMGSRGA 262 (294)
T ss_dssp ----------------CSC-----------H-HHHHHHHHHHTTCSEEEEECCCC
T ss_pred ----------------cCC-----------H-HHHHHHHHHhcCcCEEEEeCCCC
Confidence 121 1 35677899999999999999864
No 56
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=75.44 E-value=8.1 Score=36.01 Aligned_cols=87 Identities=18% Similarity=0.246 Sum_probs=55.1
Q ss_pred CeEEEEEccchhHHHHH-HHHHHcCC--cEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHH
Q 042717 19 LKVAVLLSGGVDSSVAL-RLLHSAGH--SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa-~LLke~G~--eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~ 95 (474)
+||++.+||.-+-+.++ ..+.+.++ +|.+|..+.. -..+.+.|+++|||+.+++-.+ |.
T Consensus 2 ~rI~vl~SG~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~-----------------~~~~~~~A~~~gIp~~~~~~~~-~~ 63 (216)
T 2ywr_A 2 LKIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNP-----------------KAYAIERCKKHNVECKVIQRKE-FP 63 (216)
T ss_dssp EEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESCT-----------------TCHHHHHHHHHTCCEEECCGGG-SS
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEeCCC-----------------ChHHHHHHHHcCCCEEEeCccc-cc
Confidence 48999999987655443 33444456 7777765421 0135788999999998876531 11
Q ss_pred HhhHhhhHHHHhcCCCCCcccccchHHHH-HHHHHHHHHcCCCEEEEceeccc
Q 042717 96 KNVVSYIIEEYRCGRTPNPDVLCNTRIKF-GAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tpNPci~Cnr~iKf-~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
. + --| ..+.+..++.+.|.++...|..+
T Consensus 64 ~-----------------------r-~~~~~~~~~~l~~~~~Dliv~a~y~~i 92 (216)
T 2ywr_A 64 S-----------------------K-KEFEERMALELKKKGVELVVLAGFMRI 92 (216)
T ss_dssp S-----------------------H-HHHHHHHHHHHHHTTCCEEEESSCCSC
T ss_pred c-----------------------h-hhhhHHHHHHHHhcCCCEEEEeCchhh
Confidence 0 0 011 23456667789999999888764
No 57
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=74.61 E-value=22 Score=34.55 Aligned_cols=85 Identities=15% Similarity=0.146 Sum_probs=55.2
Q ss_pred CCCeEEEEEccchhHHHHHHHHH-HcC---CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcch
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLH-SAG---HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTD 92 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLk-e~G---~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~ 92 (474)
..+||+|..||. +|.+-+.+-. +.| .+|.+|.-+.. +++.+|+++|||++.++.+.
T Consensus 89 ~~~ri~vl~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~-------------------~~~~~A~~~gIp~~~~~~~~ 148 (286)
T 3n0v_A 89 HRPKVVIMVSKA-DHCLNDLLYRQRIGQLGMDVVAVVSNHP-------------------DLEPLAHWHKIPYYHFALDP 148 (286)
T ss_dssp CCCEEEEEESSC-CHHHHHHHHHHHTTSSCCEEEEEEESSS-------------------TTHHHHHHTTCCEEECCCBT
T ss_pred CCcEEEEEEeCC-CCCHHHHHHHHHCCCCCcEEEEEEeCcH-------------------HHHHHHHHcCCCEEEeCCCc
Confidence 457899999998 4544433322 233 57877766531 13456999999999887642
Q ss_pred HHHHhhHhhhHHHHhcCCCCCcccccchHHHH-HHHHHHHHHcCCCEEEEceeccc
Q 042717 93 EYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKF-GAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 93 ~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf-~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
. ++ ..+ ..+.+..++.++|+|+...|.++
T Consensus 149 ~-------------------------~r-~~~~~~~~~~l~~~~~Dlivla~y~~i 178 (286)
T 3n0v_A 149 K-------------------------DK-PGQERKVLQVIEETGAELVILARYMQV 178 (286)
T ss_dssp T-------------------------BH-HHHHHHHHHHHHHHTCSEEEESSCCSC
T ss_pred C-------------------------CH-HHHHHHHHHHHHhcCCCEEEecccccc
Confidence 0 00 111 23566777789999999988765
No 58
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=74.48 E-value=9.3 Score=35.50 Aligned_cols=87 Identities=17% Similarity=0.193 Sum_probs=53.9
Q ss_pred CeEEEEEccchhHHHHHHHHHHc---CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHH
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA---GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~---G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~ 95 (474)
+||+|.+||+-=+.-++.-..+. +++|.+|..+.. ....++.|+++|||+++++... |.
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~~~~~~~~I~~Vvs~~~-----------------~~~~~~~A~~~gIp~~~~~~~~-~~ 62 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKA-----------------AVAGLDKAERAGIPTRVINHKL-YK 62 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHHSTTCSCEEEEEEESST-----------------TCHHHHHHHHTTCCEEECCGGG-SS
T ss_pred CeEEEEEECCchHHHHHHHHHhcCCCCcEEEEEEeCCC-----------------ChHHHHHHHHcCCCEEEECccc-cC
Confidence 48999999987444443322222 688888876531 0124678999999999876531 10
Q ss_pred HhhHhhhHHHHhcCCCCCcccccchHHHH-HHHHHHHHHcCCCEEEEceeccc
Q 042717 96 KNVVSYIIEEYRCGRTPNPDVLCNTRIKF-GAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tpNPci~Cnr~iKf-~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
. + ..| ..+.+..++.+.|+|+...|..+
T Consensus 63 ~-----------------------r-~~~~~~~~~~l~~~~~Dliv~a~y~~i 91 (209)
T 1meo_A 63 N-----------------------R-VEFDSAIDLVLEEFSIDIVCLAGFMRI 91 (209)
T ss_dssp S-----------------------H-HHHHHHHHHHHHHTTCCEEEEESCCSC
T ss_pred c-----------------------h-hhhhHHHHHHHHhcCCCEEEEcchhhh
Confidence 0 0 012 23455666788899888877654
No 59
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=74.07 E-value=37 Score=28.14 Aligned_cols=35 Identities=6% Similarity=-0.007 Sum_probs=27.0
Q ss_pred CCeEEEEEccchhHHHHHHHH----HHcCCcEEEEEEEc
Q 042717 18 GLKVAVLLSGGVDSSVALRLL----HSAGHSCTAFYLKI 52 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LL----ke~G~eV~gv~~~~ 52 (474)
-++|+|++.|.-.|.-++..+ +..+-+++.+|+..
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~ 44 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLD 44 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEc
Confidence 478999999999997666544 33488999999854
No 60
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=71.96 E-value=33 Score=28.19 Aligned_cols=36 Identities=14% Similarity=0.036 Sum_probs=27.4
Q ss_pred CCeEEEEEccchhHHHHHHHH----HHcCCcEEEEEEEcC
Q 042717 18 GLKVAVLLSGGVDSSVALRLL----HSAGHSCTAFYLKIW 53 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LL----ke~G~eV~gv~~~~~ 53 (474)
-++|+|++.|...|.-++..+ +..|-+++.+|+...
T Consensus 5 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~ 44 (146)
T 3s3t_A 5 YTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDD 44 (146)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEC
T ss_pred cceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecC
Confidence 468999999999987666544 344889999998653
No 61
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=71.86 E-value=12 Score=34.86 Aligned_cols=87 Identities=11% Similarity=0.148 Sum_probs=53.7
Q ss_pred CeEEEEEccchhHHHHHHHHHHc---CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHH
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA---GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~---G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~ 95 (474)
+||+|..||.--.+-++.-..+. +++|.+|..+... ..+.+.|+++|||++.++... |.
T Consensus 1 ~ri~vl~Sg~gsnl~ali~~~~~~~~~~~i~~Vis~~~~-----------------~~~~~~A~~~gIp~~~~~~~~-~~ 62 (212)
T 1jkx_A 1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKAD-----------------AFGLERARQAGIATHTLIASA-FD 62 (212)
T ss_dssp CEEEEEESSCCHHHHHHHHHHHTTSSSSEEEEEEESCTT-----------------CHHHHHHHHTTCEEEECCGGG-CS
T ss_pred CEEEEEEECCcHHHHHHHHHHHcCCCCceEEEEEeCCCc-----------------hHHHHHHHHcCCcEEEeCccc-cc
Confidence 48999999977333222222223 4788888764210 125788999999998876421 10
Q ss_pred HhhHhhhHHHHhcCCCCCcccccchHHHH-HHHHHHHHHcCCCEEEEceeccc
Q 042717 96 KNVVSYIIEEYRCGRTPNPDVLCNTRIKF-GAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tpNPci~Cnr~iKf-~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
. + -.| ..+.+..++.+.|+++...|..+
T Consensus 63 ~-----------------------r-~~~~~~~~~~l~~~~~Dliv~agy~~i 91 (212)
T 1jkx_A 63 S-----------------------R-EAYDRELIHEIDMYAPDVVVLAGFMRI 91 (212)
T ss_dssp S-----------------------H-HHHHHHHHHHHGGGCCSEEEESSCCSC
T ss_pred c-----------------------h-hhccHHHHHHHHhcCCCEEEEeChhhh
Confidence 0 0 012 23456677789999999888764
No 62
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=71.51 E-value=21 Score=35.89 Aligned_cols=91 Identities=12% Similarity=-0.014 Sum_probs=54.2
Q ss_pred ecCCCeEEEecCCCCccceeeEEEEcceeeccC----------CCcccccceeeeeccCCCccceEEEEeeeecCCCCEE
Q 042717 280 DVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG----------LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIA 349 (474)
Q Consensus 280 d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~----------~~~~~~~~~~~kiR~~~~~~~c~v~~~~~~~~~~~~~ 349 (474)
|...+.|+..++.. +. ....+ -..+.|+.. .|... .....+.++.....|+|... +++.+
T Consensus 297 d~~~G~vl~~~~~~-~~-~~~~~-~a~~~~l~~~~~~~~~~~~~~l~~--~~~~~~~~gt~~~~~~v~~~-----~~~~~ 366 (403)
T 3sjy_A 297 DNLLGSIITLADAE-VP-VLWNI-RIKYNLLERVVGAKEMLKVDPIRA--KETLMLSVGSSTTLGIVTSV-----KKDEI 366 (403)
T ss_dssp GTTTTCEEEETTCC-CC-EEEEE-EEEEEECSBCTTCSSCCBCCCCCT--TCEEEEEETTEEEEEEEEEE-----CSSEE
T ss_pred hhccccEEeCCCCC-Cc-ceeEE-EEEEEEEeccccccccccCCCCCC--CCEEEEEECccEEEEEEEEe-----cCceE
Confidence 44456666665432 11 12333 345777753 11111 22344455566678888865 35688
Q ss_pred EEEecCCccCCCCCc-eEEE-EeCC---EEEEeeEEe
Q 042717 350 VVQLSEDDQGLAAGQ-FAAF-YQGT---RCIGSGVIL 381 (474)
Q Consensus 350 ~v~f~ep~~avapGQ-~av~-Y~g~---~~lGgG~I~ 381 (474)
.+.|++| -++.+|| -.++ .+.+ +++|.|.|.
T Consensus 367 ~~~l~~p-~~~~~g~~r~~i~r~~~~~~r~~g~g~i~ 402 (403)
T 3sjy_A 367 EVELRRP-VAVWSNNIRTVISRQIAGRWRMIGWGLVE 402 (403)
T ss_dssp EEEEEEE-EECCSSSCEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEeCCc-EeeccCCEEEEEEEEeCCcEEEEEEEEEE
Confidence 9999999 5677899 5554 5444 799999985
No 63
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=70.88 E-value=25 Score=34.37 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=54.6
Q ss_pred CCCeEEEEEccchhHHHHHHHHH-HcC---CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcch
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLH-SAG---HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTD 92 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLk-e~G---~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~ 92 (474)
..+||+|..||. +|.+.+.+-. +.| .+|.+|.-++. +++.+|+++|||++.++.+.
T Consensus 94 ~~~ri~vl~Sg~-g~~l~~ll~~~~~g~l~~~i~~Visn~~-------------------~~~~~A~~~gIp~~~~~~~~ 153 (292)
T 3lou_A 94 ARPKVLIMVSKL-EHCLADLLFRWKMGELKMDIVGIVSNHP-------------------DFAPLAAQHGLPFRHFPITA 153 (292)
T ss_dssp SCCEEEEEECSC-CHHHHHHHHHHHHTSSCCEEEEEEESSS-------------------TTHHHHHHTTCCEEECCCCS
T ss_pred CCCEEEEEEcCC-CcCHHHHHHHHHcCCCCcEEEEEEeCcH-------------------HHHHHHHHcCCCEEEeCCCc
Confidence 356899999998 4544333322 223 67877765431 13456999999999887531
Q ss_pred HHHHhhHhhhHHHHhcCCCCCcccccchHHHH-HHHHHHHHHcCCCEEEEceeccc
Q 042717 93 EYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKF-GAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 93 ~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf-~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
. ++ ..+ ..+.+..++.++|+|+...|.++
T Consensus 154 ~-------------------------~r-~~~~~~~~~~l~~~~~Dlivla~y~~i 183 (292)
T 3lou_A 154 D-------------------------TK-AQQEAQWLDVFETSGAELVILARYMQV 183 (292)
T ss_dssp S-------------------------CH-HHHHHHHHHHHHHHTCSEEEESSCCSC
T ss_pred C-------------------------CH-HHHHHHHHHHHHHhCCCEEEecCchhh
Confidence 0 01 112 34566777889999999988765
No 64
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=70.30 E-value=7 Score=39.50 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=56.3
Q ss_pred EecCCCeEEEecCCCCccceeeEEEEcceeeccCC------CcccccceeeeeccCCCccceEEEEeee----ecCCCCE
Q 042717 279 KDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL------PPEEISRLQCKVRHGPGFYNCNLMIEHV----EDGGENI 348 (474)
Q Consensus 279 ~d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~------~~~~~~~~~~kiR~~~~~~~c~v~~~~~----~~~~~~~ 348 (474)
.|...+.++..++. +. ....+ ...+.|+... |..........++ .....|++.+... ..++...
T Consensus 278 ~~i~~G~~l~~~~~--~~-~~~~f-~a~v~~l~~~~~~~~~~~~~g~~~~~~~~--t~~~~~~i~l~~~~~~l~~~~~~~ 351 (397)
T 1d2e_A 278 EDLRRGLVMAKPGS--IQ-PHQKV-EAQVYILTKEEGGRHKPFVSHFMPVMFSL--TWDMACRIILPPGKELAMPGEDLK 351 (397)
T ss_dssp GGCCTTCEEESTTS--CC-CEEEE-EEEEEECCGGGTSCSSCBCTTCCCEEEET--TEEEEEEEECCSSCCCBCTTCEEE
T ss_pred hccCceeEEeCCCC--CC-cccEE-EEEEEEeccccccCccccCCCCEEEEEEe--cCEEEEEEEEcCCcccccCCCEEE
Confidence 45667777776542 11 12333 4456777532 1111122222222 3335666653110 0112235
Q ss_pred EEEEecCCccCCCCCceEEEEeCCEEEEeeEEeeecc
Q 042717 349 AVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILESWD 385 (474)
Q Consensus 349 ~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I~~~~~ 385 (474)
++++|.+| -++.+|+-.+|=++...+|+|+|.....
T Consensus 352 v~~~~~~p-~~~~~~~r~~lr~~~~ti~~G~i~~~~~ 387 (397)
T 1d2e_A 352 LTLILRQP-MILEKGQRFTLRDGNRTIGTGLVTDTPA 387 (397)
T ss_dssp EEEEEEEE-ECCCTTCEEEEEETTEEEEEEEEEECCC
T ss_pred EEEEECCe-EEEccCCeEEEEeCCeEEEEEEEeeccc
Confidence 67788888 4677999999988889999999986654
No 65
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=67.98 E-value=28 Score=28.55 Aligned_cols=34 Identities=3% Similarity=-0.129 Sum_probs=25.4
Q ss_pred CeEEEEEccchh--HHHHHH----HHHHcCCcEEEEEEEc
Q 042717 19 LKVAVLLSGGVD--SSVALR----LLHSAGHSCTAFYLKI 52 (474)
Q Consensus 19 ~kVlValSGGvD--Ssvaa~----LLke~G~eV~gv~~~~ 52 (474)
++|+|++.|... |.-++. +++..+-+++.+|+..
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~ 41 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIP 41 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEec
Confidence 689999999888 655443 3344588999999864
No 66
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=67.25 E-value=16 Score=37.36 Aligned_cols=96 Identities=13% Similarity=0.129 Sum_probs=52.3
Q ss_pred ecCCCeEEEecCCCCccceeeEEEEcceeeccCCCcccccceeeeeccCCCccceEEEEeee---------------ecC
Q 042717 280 DVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHV---------------EDG 344 (474)
Q Consensus 280 d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~~~~~~~~~~~kiR~~~~~~~c~v~~~~~---------------~~~ 344 (474)
|...+.++...+.. ......+. ..+.|+...|......+...+. ....+|+|..... ..+
T Consensus 315 ~i~~G~~l~~~~~~--~~~~~~f~-a~~~~l~~~~l~~g~~~~~~~~--t~~~~~~v~~~~~~~d~~~~~~~~~~~l~~~ 389 (434)
T 1zun_B 315 DISRGDLLVHADNV--PQVSDAFD-AMLVWMAEEPMLPGKKYDIKRA--TSYVPGSIASITHRVDVNTLEEGPASSLQLN 389 (434)
T ss_dssp CCCTTCEEEETTSC--CCEEEEEE-EEEEECCSSCBCTTCCEEEECS--SCEEEEEEEEEEEEECTTTCCCCCCSCBCTT
T ss_pred ccCCccEEECCCCC--CCcccEEE-EEEEEeccccCCCCCEEEEEEc--CCEEEEEEEEEeeeeccccccccCccEeCCC
Confidence 45677888776532 12334444 4677885443322223333333 3345676654321 001
Q ss_pred CCCEEEEEecCCccCCCCCc------eEEE--EeCCEEEEeeEEe
Q 042717 345 GENIAVVQLSEDDQGLAAGQ------FAAF--YQGTRCIGSGVIL 381 (474)
Q Consensus 345 ~~~~~~v~f~ep~~avapGQ------~av~--Y~g~~~lGgG~I~ 381 (474)
+...+.++|.+| -++.+++ ..++ +.+...+|+|+|.
T Consensus 390 d~~~v~~~~~~p-~~~~~~~~~~~~grf~l~d~~~~~tv~~G~i~ 433 (434)
T 1zun_B 390 EIGRVKVSLDAP-IALDGYSSNRTTGAFIVIDRLTNGTVAAGMII 433 (434)
T ss_dssp CEEEEEEEEEEE-EECCCTTTCTTTTEEEEECTTTCCEEEEEEEE
T ss_pred CEEEEEEEECCe-EEEcccccCCccceEEEEECCCCcEEEEEEEe
Confidence 112467778888 4566777 5555 3457899999985
No 67
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=66.86 E-value=26 Score=32.64 Aligned_cols=86 Identities=13% Similarity=0.191 Sum_probs=55.2
Q ss_pred CeEEEEEccchhHHHHHHHH-HHcC---CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHH
Q 042717 19 LKVAVLLSGGVDSSVALRLL-HSAG---HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEY 94 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LL-ke~G---~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f 94 (474)
+||+|..||+ .|.+-+.+- .+.| .+|.+|..+... ..+.+.|+++|||.++++... |
T Consensus 3 ~riavl~Sg~-Gsnl~ali~~~~~~~l~~eI~~Visn~~~-----------------a~v~~~A~~~gIp~~~~~~~~-~ 63 (211)
T 3p9x_A 3 KRVAIFASGS-GTNAEAIIQSQKAGQLPCEVALLITDKPG-----------------AKVVERVKVHEIPVCALDPKT-Y 63 (211)
T ss_dssp CEEEEECCTT-CHHHHHHHHHHHTTCCSSEEEEEEESCSS-----------------SHHHHHHHTTTCCEEECCGGG-S
T ss_pred CEEEEEEeCC-chHHHHHHHHHHcCCCCcEEEEEEECCCC-----------------cHHHHHHHHcCCCEEEeChhh-c
Confidence 6899999997 465544332 2334 578777664210 247889999999999886531 1
Q ss_pred HHhhHhhhHHHHhcCCCCCcccccchHHHH-HHHHHHHHHcCCCEEEEceeccc
Q 042717 95 WKNVVSYIIEEYRCGRTPNPDVLCNTRIKF-GAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 95 ~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf-~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
.. + -.| ..+.+..++.+.|+|+...|.++
T Consensus 64 ~~-----------------------r-~~~d~~~~~~l~~~~~Dliv~agy~~I 93 (211)
T 3p9x_A 64 PS-----------------------K-EAYEIEVVQQLKEKQIDFVVLAGYMRL 93 (211)
T ss_dssp SS-----------------------H-HHHHHHHHHHHHHTTCCEEEESSCCSC
T ss_pred Cc-----------------------h-hhhHHHHHHHHHhcCCCEEEEeCchhh
Confidence 10 0 011 33556777889999998888764
No 68
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=66.67 E-value=24 Score=28.94 Aligned_cols=34 Identities=9% Similarity=0.040 Sum_probs=25.9
Q ss_pred CeEEEEEccchhHHHHHHHH----HHcCCcEEEEEEEc
Q 042717 19 LKVAVLLSGGVDSSVALRLL----HSAGHSCTAFYLKI 52 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LL----ke~G~eV~gv~~~~ 52 (474)
++|+|++.|...|.-++..+ +..|-+++.+|+..
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~ 40 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYE 40 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEec
Confidence 68999999999887655443 34488999998863
No 69
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=66.37 E-value=16 Score=37.82 Aligned_cols=37 Identities=16% Similarity=-0.008 Sum_probs=29.6
Q ss_pred EEEEEecCCccCCCCCc------eEEEEeCCEEEEeeEEeeecc
Q 042717 348 IAVVQLSEDDQGLAAGQ------FAAFYQGTRCIGSGVILESWD 385 (474)
Q Consensus 348 ~~~v~f~ep~~avapGQ------~av~Y~g~~~lGgG~I~~~~~ 385 (474)
.+.++|.+| -++.+++ ..+|-+++.-+|+|+|.....
T Consensus 399 ~v~~~~~~p-~~~~~~~~~~~~grf~lr~~~~tv~~G~v~~~~~ 441 (458)
T 1f60_A 399 LVKFVPSKP-MCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 441 (458)
T ss_dssp EEEEEESSC-CCCCCTTTCGGGSEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEECCe-EEEecCccCCCCCcEEEEECCeEEEEEEEEeecc
Confidence 567778888 4666888 777788889999999987765
No 70
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=65.45 E-value=61 Score=27.45 Aligned_cols=35 Identities=9% Similarity=-0.156 Sum_probs=27.2
Q ss_pred CCeEEEEEccchhHHHHHHHHHHc----CCcEEEEEEEc
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSA----GHSCTAFYLKI 52 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~----G~eV~gv~~~~ 52 (474)
-++|+|++.|..+|.-++..+.+. |-+++.+|+..
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~ 43 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVID 43 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEE
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 468999999999998776655443 67899988754
No 71
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=65.22 E-value=8.7 Score=38.81 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=29.4
Q ss_pred EEEEEecCCccCCCCCceEEEEeCCEEEEeeEEeee
Q 042717 348 IAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILES 383 (474)
Q Consensus 348 ~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I~~~ 383 (474)
.++++|.+| -++.+|+-.+|=++...+|+|+|...
T Consensus 369 ~v~~~~~~p-~~~~~~~rf~lr~~~~ti~~G~i~~~ 403 (405)
T 2c78_A 369 TFTVELIKP-VALEEGLRFAIREGGRTVGAGVVTKI 403 (405)
T ss_dssp EEEEEEEEE-EEECTTCEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEECce-EEEccCCEEEEEcCCeEEEEEEEEec
Confidence 567788888 46779999999888899999999865
No 72
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=65.05 E-value=57 Score=27.33 Aligned_cols=35 Identities=9% Similarity=-0.036 Sum_probs=28.0
Q ss_pred CCeEEEEEccchhHHHHHHHHHHc----CCcEEEEEEEc
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSA----GHSCTAFYLKI 52 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~----G~eV~gv~~~~ 52 (474)
.++|+|++.|...|.-++..+.+. |-+++.+|+..
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~ 43 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVID 43 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEE
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEec
Confidence 468999999999998877666553 67888888753
No 73
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=65.02 E-value=26 Score=35.32 Aligned_cols=51 Identities=22% Similarity=0.141 Sum_probs=38.8
Q ss_pred eccCCCccceEEEEeeeecCCCCEEEEEecCCccCCCCCceEEEEe----CCEEEEeeEEe
Q 042717 325 VRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ----GTRCIGSGVIL 381 (474)
Q Consensus 325 iR~~~~~~~c~v~~~~~~~~~~~~~~v~f~ep~~avapGQ~av~Y~----g~~~lGgG~I~ 381 (474)
+.+...-..|+|... ..+.+.++|.+| -++.+|+-.+|-+ +.+.+|+|+|.
T Consensus 355 ~~~~t~~~~~~v~~~-----~~~~~~l~~~~p-~~~~~~~~~~~~~~~~~~~r~ig~G~i~ 409 (410)
T 1kk1_A 355 LNVGTARTMGLVTGL-----GKDEIEVKLQIP-VCAEPGDRVAISRQIGSRWRLIGYGIIK 409 (410)
T ss_dssp EEETTEEEEEEEEEE-----ETTEEEEEEEEE-EECCTTCEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEcCCEEeEEEEEe-----cCCEEEEEeCCc-EEecCCCEEEEEEecCCCcEEEEEEEEc
Confidence 334455578888765 235889999999 5677999999977 56899999996
No 74
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=64.57 E-value=39 Score=31.70 Aligned_cols=91 Identities=4% Similarity=0.014 Sum_probs=60.3
Q ss_pred CCCeEEEEEccchhHHHHHH----HHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcch
Q 042717 17 KGLKVAVLLSGGVDSSVALR----LLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTD 92 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~----LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~ 92 (474)
..++|+|++.|...|.-++. +.+..|-+++.+|+... . ...+.++.+.+.+...|+++...-..
T Consensus 6 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~--~---------~~~~~l~~~~~~~~~~~~~~~~~~~~- 73 (290)
T 3mt0_A 6 AIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKR--R---------DHSAALNDLAQELREEGYSVSTNQAW- 73 (290)
T ss_dssp TCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSS--S---------CCHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred hhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCc--H---------HHHHHHHHHHHHHhhCCCeEEEEEEe-
Confidence 35789999999887765543 44455889999988641 0 13455666666677778877654321
Q ss_pred HHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecc
Q 042717 93 EYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAK 146 (474)
Q Consensus 93 ~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~ 146 (474)
.| . . ...+.+.+++.++|.|+.|.+..
T Consensus 74 ---------------~g-~----------~-~~~i~~~a~~~~~dliV~G~~~~ 100 (290)
T 3mt0_A 74 ---------------KD-S----------L-HQTIIAEQQAEGCGLIIKQHFPD 100 (290)
T ss_dssp ---------------SS-S----------H-HHHHHHHHHHHTCSEEEEECCCS
T ss_pred ---------------CC-C----------H-HHHHHHHHHhcCCCEEEEecccC
Confidence 01 0 1 34566778888999999998754
No 75
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=61.81 E-value=7.5 Score=32.17 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.4
Q ss_pred CeEEEEE-ccchhHHHHHHHHHHcCCcE
Q 042717 19 LKVAVLL-SGGVDSSVALRLLHSAGHSC 45 (474)
Q Consensus 19 ~kVlVal-SGGvDSsvaa~LLke~G~eV 45 (474)
++|+|-. .||..|..++.+|++.||+|
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v 117 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNV 117 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCC
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCce
Confidence 6777777 58999999999999999964
No 76
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=60.46 E-value=9.7 Score=30.26 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=25.2
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCcE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSC 45 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~eV 45 (474)
+.++|++-..+|..|..++.+|++.||+|
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v 83 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNA 83 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEE
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCE
Confidence 45678888899999999999999999954
No 77
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=59.22 E-value=73 Score=27.16 Aligned_cols=32 Identities=19% Similarity=-0.047 Sum_probs=23.7
Q ss_pred CCCeEEEEEccchhHHHHHHHHHH---cCCcEEEE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHS---AGHSCTAF 48 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke---~G~eV~gv 48 (474)
..++|+|++.|...|.-++..+.+ .+-+++.+
T Consensus 16 ~~~~ILv~vD~s~~s~~al~~A~~lA~~~a~l~ll 50 (163)
T 1tq8_A 16 AYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIA 50 (163)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred cCCEEEEEcCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 347899999999988766544332 57788888
No 78
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=58.43 E-value=42 Score=33.73 Aligned_cols=51 Identities=22% Similarity=0.163 Sum_probs=38.6
Q ss_pred eccCCCccceEEEEeeeecCCCCEEEEEecCCccCCCCCceEEEEe----CCEEEEeeEEe
Q 042717 325 VRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ----GTRCIGSGVIL 381 (474)
Q Consensus 325 iR~~~~~~~c~v~~~~~~~~~~~~~~v~f~ep~~avapGQ~av~Y~----g~~~lGgG~I~ 381 (474)
+........|+|... ..+.+.++|.+| -.+.+|+-.+|-+ +.+.+|+|+|.
T Consensus 353 ~~~~t~~~~~~v~~~-----~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~r~ig~G~i~ 407 (408)
T 1s0u_A 353 LNIGTATTAGVITSA-----RGDIADIKLKLP-ICAEIGDRVAISRRVGSRWRLIGYGTIE 407 (408)
T ss_dssp EEETTEEEEEEEEEE-----ETTEEEEEEEEE-EECCTTCEEEEEEECSSSEEEEEEEEEC
T ss_pred EEEcCCEEEEEEEEe-----cCCEEEEEECCc-EEecCCCEEEEEEecCCCeEEEEEEEEc
Confidence 333445578888765 235889999999 5677999999987 56899999986
No 79
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=57.31 E-value=11 Score=30.01 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=25.5
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCcEE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCT 46 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~eV~ 46 (474)
+.++|++-..+|..|..++..|++.||+|.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~ 84 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAV 84 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEE
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeE
Confidence 456788888899999999999999999653
No 80
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=56.96 E-value=58 Score=27.17 Aligned_cols=36 Identities=11% Similarity=0.026 Sum_probs=26.8
Q ss_pred CCCeEEEEEc--cchhHHHHHHHH----HHcCCcEEEEEEEc
Q 042717 17 KGLKVAVLLS--GGVDSSVALRLL----HSAGHSCTAFYLKI 52 (474)
Q Consensus 17 ~~~kVlValS--GGvDSsvaa~LL----ke~G~eV~gv~~~~ 52 (474)
.-++|+|++. |...|.-++..+ +..+-+++.+|+..
T Consensus 14 ~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~ 55 (156)
T 3fg9_A 14 VYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLE 55 (156)
T ss_dssp CCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEEC
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEe
Confidence 3568999999 999987766544 34488999999864
No 81
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=56.87 E-value=11 Score=30.52 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=25.7
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCcEE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCT 46 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~eV~ 46 (474)
+.++|+|-+.+|.-|..++..|++.||+++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~ 84 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAV 84 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEE
Confidence 456788888889999999999999999864
No 82
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=56.50 E-value=12 Score=30.33 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=25.5
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCcEE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCT 46 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~eV~ 46 (474)
+.++|++-..+|..|..++.+|++.||+|.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~ 83 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIV 83 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEE
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEE
Confidence 456788888999999999999999999653
No 83
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=55.96 E-value=37 Score=29.78 Aligned_cols=57 Identities=25% Similarity=0.201 Sum_probs=40.2
Q ss_pred CCCeEEEEEccchhH-----HHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcc
Q 042717 17 KGLKVAVLLSGGVDS-----SVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLT 91 (474)
Q Consensus 17 ~~~kVlValSGGvDS-----svaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~ 91 (474)
...||+++.-|| |- .+++.+|...||+|+- ++.+ ...+.+.+.+.+.+..+..+...
T Consensus 17 ~~~~vlla~~~g-d~HdiG~~~va~~l~~~G~eVi~----lG~~-------------~p~e~lv~aa~~~~~diV~lS~~ 78 (161)
T 2yxb_A 17 RRYKVLVAKMGL-DGHDRGAKVVARALRDAGFEVVY----TGLR-------------QTPEQVAMAAVQEDVDVIGVSIL 78 (161)
T ss_dssp CSCEEEEEEESS-SSCCHHHHHHHHHHHHTTCEEEC----CCSB-------------CCHHHHHHHHHHTTCSEEEEEES
T ss_pred CCCEEEEEeCCC-CccHHHHHHHHHHHHHCCCEEEE----CCCC-------------CCHHHHHHHHHhcCCCEEEEEee
Confidence 456899999888 64 5677788889999852 2211 12445567788889888888765
No 84
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=55.22 E-value=12 Score=34.93 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=25.9
Q ss_pred CCCeEEEEEccchhHHHHHHHHH---HcCCcEEEEE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLH---SAGHSCTAFY 49 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLk---e~G~eV~gv~ 49 (474)
+++||+|++||++-+..++.++. +.|++|..+.
T Consensus 3 ~~k~IllgvTGaiaa~k~~~ll~~L~~~g~eV~vv~ 38 (209)
T 3zqu_A 3 GPERITLAMTGASGAQYGLRLLDCLVQEEREVHFLI 38 (209)
T ss_dssp SCSEEEEEECSSSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 45799999999999888776654 4699987654
No 85
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=53.14 E-value=50 Score=26.82 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=25.1
Q ss_pred CeEEEEEccchhHHHHHHHH-----HHcCCcEEEEEEEc
Q 042717 19 LKVAVLLSGGVDSSVALRLL-----HSAGHSCTAFYLKI 52 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LL-----ke~G~eV~gv~~~~ 52 (474)
++|+|++.|...|.-++..+ +..+-+++.+|+..
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~ 40 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKP 40 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEEC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEec
Confidence 57999999998887665443 23467888888864
No 86
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=52.28 E-value=18 Score=27.64 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=25.1
Q ss_pred CCCCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 16 ~~~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
.+.++|++-..+|..|..++..|++.||+
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 34567888888899999999999999996
No 87
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=49.92 E-value=22 Score=34.67 Aligned_cols=86 Identities=15% Similarity=0.162 Sum_probs=55.3
Q ss_pred CCCeEEEEEccchhHHHHHHHHH-HcC---CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcch
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLH-SAG---HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTD 92 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLk-e~G---~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~ 92 (474)
..+||+|..||. +|-+-+.+-. +.| .+|.+|.-+.. +. ++.+|+++|||++.++.+.
T Consensus 87 ~~~ri~vl~Sg~-g~nl~~ll~~~~~g~l~~~i~~Visn~~----------------~a--~~~~A~~~gIp~~~~~~~~ 147 (287)
T 3nrb_A 87 DRKKVVIMVSKF-DHCLGDLLYRHRLGELDMEVVGIISNHP----------------RE--ALSVSLVGDIPFHYLPVTP 147 (287)
T ss_dssp CCCEEEEEECSC-CHHHHHHHHHHHHTSSCCEEEEEEESSC----------------GG--GCCCCCCTTSCEEECCCCG
T ss_pred CCcEEEEEEeCC-CcCHHHHHHHHHCCCCCeEEEEEEeCCh----------------HH--HHHHHHHcCCCEEEEeccC
Confidence 457899999998 5554333322 223 57777765431 11 4556899999999987642
Q ss_pred HHHHhhHhhhHHHHhcCCCCCcccccchHHHH-HHHHHHHHHcCCCEEEEceeccc
Q 042717 93 EYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKF-GAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 93 ~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf-~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
.- + ..+ ..+.+..++.++|+|+...|.++
T Consensus 148 ~~-------------------------r-~~~~~~~~~~l~~~~~Dlivlagym~i 177 (287)
T 3nrb_A 148 AT-------------------------K-AAQESQIKNIVTQSQADLIVLARYMQI 177 (287)
T ss_dssp GG-------------------------H-HHHHHHHHHHHHHHTCSEEEESSCCSC
T ss_pred cc-------------------------h-hhHHHHHHHHHHHhCCCEEEhhhhhhh
Confidence 10 0 011 33566777889999999988765
No 88
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=47.33 E-value=15 Score=38.34 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=54.8
Q ss_pred ecCCCeEEEecCCCCccceeeEEEEcceeeccCC--CcccccceeeeeccCCCccceEEEEee-e--------------e
Q 042717 280 DVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL--PPEEISRLQCKVRHGPGFYNCNLMIEH-V--------------E 342 (474)
Q Consensus 280 d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~--~~~~~~~~~~kiR~~~~~~~c~v~~~~-~--------------~ 342 (474)
|...+.++++.... +. ....+ ...+.|+... +......+ .+..+..-.+|++.... . .
T Consensus 273 ~i~~Gdvl~~~~~~-~~-~~~~~-~a~v~~l~~~~~~l~~g~~~--~l~~~t~~~~~~v~~~~~~~~d~~~~~~~~~~l~ 347 (482)
T 1wb1_A 273 QIYRGXILTSKDTK-LQ-TVDKI-VAKIKISDIFKYNLTPKMKV--HLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVI 347 (482)
T ss_dssp CCCSSCBCCCTTCC-CC-CEEEE-EECCCCCSSCCSCCCSSCEE--EEEETTEEEEEEEEEEEECCSSSCCCEEECCSSC
T ss_pred hccccceEecCCCC-Cc-eeeEE-EEEEEEeccCCcccCCCCEE--EEEEcccEEEEEEEEEeccccccccccccchhhc
Confidence 45667777333221 11 23344 4567887542 22122222 23333334566665432 0 0
Q ss_pred cCCCCEEEEEecCCccCCCCCceEEEEe---C---CEEEEeeEEeeecc
Q 042717 343 DGGENIAVVQLSEDDQGLAAGQFAAFYQ---G---TRCIGSGVILESWD 385 (474)
Q Consensus 343 ~~~~~~~~v~f~ep~~avapGQ~av~Y~---g---~~~lGgG~I~~~~~ 385 (474)
.++...+.++|.+| -++.+|+..++=+ + .+.+|+|+|.....
T Consensus 348 ~g~~~~v~l~~~~p-v~~~~~~rfilr~~~~~~~~~~tvg~G~v~~~~~ 395 (482)
T 1wb1_A 348 SGNEXYXAFELEEK-VLAEVGDRVLITRLDLPPTTLRIXGHGLIEEFKP 395 (482)
T ss_dssp CSSCCCEEEEEEEE-ECCCSSCCCBEECTTSCTTSCCCCCBCCEEECCC
T ss_pred CCCEEEEEEEcCcc-EEecCCCeEEEEECCCCccCceEeeEEEEEeccc
Confidence 11234678889999 4566888888866 3 58999999986644
No 89
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=47.29 E-value=19 Score=33.48 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=23.9
Q ss_pred CCCeEEEEEccchhHH----HHHHHHHHcCCcEEEEEE
Q 042717 17 KGLKVAVLLSGGVDSS----VALRLLHSAGHSCTAFYL 50 (474)
Q Consensus 17 ~~~kVlValSGGvDSs----vaa~LLke~G~eV~gv~~ 50 (474)
+++||++++|||.-.- -++..|++.|++|..+.-
T Consensus 4 ~~k~IllgiTGsiaayk~~~~ll~~L~~~g~eV~vv~T 41 (207)
T 3mcu_A 4 KGKRIGFGFTGSHCTYEEVMPHLEKLIAEGAEVRPVVS 41 (207)
T ss_dssp TTCEEEEEECSCGGGGTTSHHHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 4689999999997433 234455667999886643
No 90
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=47.00 E-value=1.2e+02 Score=25.65 Aligned_cols=23 Identities=9% Similarity=0.187 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCCCEEEEceecc
Q 042717 124 FGAFMDAISSMEFDYVASGHYAK 146 (474)
Q Consensus 124 f~~l~~~A~~~Gad~IATGH~a~ 146 (474)
...+.++|++.++|.|+.|.+..
T Consensus 113 ~~~I~~~a~~~~~DLIVmG~~g~ 135 (175)
T 2gm3_A 113 KDVICQEVKRVRPDFLVVGSRGL 135 (175)
T ss_dssp HHHHHHHHHHHCCSEEEEEECCC
T ss_pred HHHHHHHHHHhCCCEEEEeCCCC
Confidence 35677889999999999998754
No 91
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=46.41 E-value=29 Score=35.86 Aligned_cols=36 Identities=8% Similarity=0.037 Sum_probs=27.9
Q ss_pred CEEEEEecCCccCCCCCc------eEEEEeCCEEEEeeEEeee
Q 042717 347 NIAVVQLSEDDQGLAAGQ------FAAFYQGTRCIGSGVILES 383 (474)
Q Consensus 347 ~~~~v~f~ep~~avapGQ------~av~Y~g~~~lGgG~I~~~ 383 (474)
..+.++|.+| -++.+|+ ..+|=|++..+|+|+|...
T Consensus 424 ~~v~l~~~~p-~~~~~~~~~~~~grf~lrd~~~Tv~~G~i~~~ 465 (467)
T 1r5b_A 424 IIAELETQTP-VCMERFEDYQYMGRFTLRDQGTTVAVGKVVKI 465 (467)
T ss_dssp CCEEEEEEEE-EECCCTTTCHHHHEEEEECSSSCEEEEEEEEE
T ss_pred EEEEEEECcE-EEEEEcCcCCCCccEEEEECCeEEEEEEEEEe
Confidence 3578888888 4677884 6677777789999999865
No 92
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=46.06 E-value=30 Score=33.66 Aligned_cols=86 Identities=21% Similarity=0.188 Sum_probs=53.8
Q ss_pred CCCeEEEEEccchhHHHHHHHH-HHcC---CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcch
Q 042717 17 KGLKVAVLLSGGVDSSVALRLL-HSAG---HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTD 92 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LL-ke~G---~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~ 92 (474)
..+||+|..||. +|-+-+.+- .+.| .+|.+|.-++. .+ ++.+|+++|||++.++.+.
T Consensus 88 ~~~ri~vl~Sg~-g~nl~~ll~~~~~g~l~~~i~~Visn~p---------------~~---~~~~A~~~gIp~~~~~~~~ 148 (288)
T 3obi_A 88 TRRKVMLLVSQS-DHCLADILYRWRVGDLHMIPTAIVSNHP---------------RE---TFSGFDFGDIPFYHFPVNK 148 (288)
T ss_dssp SCEEEEEEECSC-CHHHHHHHHHHHTTSSCEEEEEEEESSC---------------GG---GSCCTTTTTCCEEECCCCT
T ss_pred CCcEEEEEEcCC-CCCHHHHHHHHHCCCCCeEEEEEEcCCC---------------hh---HHHHHHHcCCCEEEeCCCc
Confidence 456899999997 555433332 2334 36666654421 11 3456899999999987642
Q ss_pred HHHHhhHhhhHHHHhcCCCCCcccccchHHHH-HHHHHHHHHcCCCEEEEceeccc
Q 042717 93 EYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKF-GAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 93 ~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf-~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
. ++ ..+ ..+.+..++.++|+|+...|.++
T Consensus 149 ~-------------------------~r-~~~~~~~~~~l~~~~~Dlivlagy~~i 178 (288)
T 3obi_A 149 D-------------------------TR-RQQEAAITALIAQTHTDLVVLARYMQI 178 (288)
T ss_dssp T-------------------------TH-HHHHHHHHHHHHHHTCCEEEESSCCSC
T ss_pred c-------------------------cH-HHHHHHHHHHHHhcCCCEEEhhhhhhh
Confidence 0 00 111 34566777889999999988765
No 93
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=45.58 E-value=22 Score=27.69 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=23.7
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
++|++-..+|.-|..++..|++.||+
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~ 79 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYE 79 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCC
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCc
Confidence 67888888899999999999999998
No 94
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=45.54 E-value=18 Score=30.13 Aligned_cols=30 Identities=23% Similarity=0.114 Sum_probs=25.5
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCc-EE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHS-CT 46 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~e-V~ 46 (474)
+.++|+|-..+|..|..++..|++.||+ |.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~ 111 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVK 111 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEE
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeE
Confidence 4567888888899999999999999995 54
No 95
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=44.53 E-value=19 Score=38.58 Aligned_cols=100 Identities=12% Similarity=0.085 Sum_probs=53.2
Q ss_pred EecCCCeEEEecCCCCccceeeEEEEcceeeccCCCcccccceeeeeccCCCccceEEEEee--------eecCCCCEEE
Q 042717 279 KDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEH--------VEDGGENIAV 350 (474)
Q Consensus 279 ~d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~~~~~~~~~~~kiR~~~~~~~c~v~~~~--------~~~~~~~~~~ 350 (474)
.|...+.++...+. +......|. ..+.|+....|.. ......+.++..-.+|+|.+.. ...++...+.
T Consensus 477 ~~i~rG~vl~~~~~--~~~~~~~f~-a~v~~~~~~~pi~-~g~~~~l~~~t~~~~~~i~l~~~~~~~~~~l~~gd~~~v~ 552 (592)
T 3mca_A 477 NQLRPGDILSNYEN--PVRRVRSFV-AEIQTFDIHGPIL-SGSTLVLHLGRTVTSVSLKIVTVNNKRSRHIASRKRALVR 552 (592)
T ss_dssp GGCCTTCEEECSSS--CCEEESEEE-EEEEECSCSSCEE-TTEEEEEECSSCEEEEEEEEEESSSSCCSEECSSCEEEEE
T ss_pred cccceEEEeccCCC--CccccCeEE-EEEEEECCCccCC-CCCEEEEEEcCcEEEEEEEEEeccccchhccCCCCEEEEE
Confidence 34566777766542 112234453 4566765322211 1223344444445677774321 0011122445
Q ss_pred EE-ecCCccCC------CCCceEEEEeCCEEEEeeEEeee
Q 042717 351 VQ-LSEDDQGL------AAGQFAAFYQGTRCIGSGVILES 383 (474)
Q Consensus 351 v~-f~ep~~av------apGQ~av~Y~g~~~lGgG~I~~~ 383 (474)
+. +.+|. ++ .+|+..+|-+++..+|+|+|...
T Consensus 553 l~fl~~p~-~~e~~~~~~~~~rfilr~~~~Tv~~G~i~~v 591 (592)
T 3mca_A 553 ISFLDGLF-PLCLAEECPALGRFILRRSGDTVAAGIVKEL 591 (592)
T ss_dssp EEESSSCE-EECCTTTCHHHHEEEEESSSSEEEEEEEEEE
T ss_pred EEECCCcE-EEEeccCCCCCCeEEEEECCcEEEEEEEEEc
Confidence 55 55663 44 57888888778889999999764
No 96
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=44.10 E-value=1.1e+02 Score=30.87 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=29.2
Q ss_pred EEEEEecCCccCCCCCc------eEEEEeCCEEEEeeEEeeecc
Q 042717 348 IAVVQLSEDDQGLAAGQ------FAAFYQGTRCIGSGVILESWD 385 (474)
Q Consensus 348 ~~~v~f~ep~~avapGQ------~av~Y~g~~~lGgG~I~~~~~ 385 (474)
.+.++|.+| -++.+++ ..+|=+++..+|+|+|.....
T Consensus 387 ~v~~~~~~p-~~~~~~~~~~~~grf~lr~~~~tv~~G~i~~~~~ 429 (435)
T 1jny_A 387 IVKFKPIKP-LCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVKP 429 (435)
T ss_dssp EEEEEESSC-EECCCTTTSGGGTEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEECce-EEEecCCcCCcCccEEEEECCeEEEEEEEeeecC
Confidence 467788888 4667888 778878889999999986643
No 97
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=41.42 E-value=32 Score=34.40 Aligned_cols=94 Identities=9% Similarity=-0.079 Sum_probs=53.2
Q ss_pred EecCCCeEEEecCCCCccceeeEEEEcceeeccC-CCcccccceeeeeccCCCccceEEEEeee--e------cCCCCEE
Q 042717 279 KDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG-LPPEEISRLQCKVRHGPGFYNCNLMIEHV--E------DGGENIA 349 (474)
Q Consensus 279 ~d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~-~~~~~~~~~~~kiR~~~~~~~c~v~~~~~--~------~~~~~~~ 349 (474)
.|...+.++.. + + .....+ ...+.|+.. .+... ...+.+..+..-.+|++..... . .++...+
T Consensus 265 ~~i~~Gdvl~~-~---~-~~~~~f-~a~v~~l~~~~~i~~--g~~~~~~~~t~~~~~~v~~l~~d~~~~~~~~~g~~~~v 336 (370)
T 2elf_A 265 KDIERGFIISD-K---E-IVTTDY-TLECTVSKFTKKIEP--ASVLHLFVGLQSEPVRVEKILVDGNEVEEAKPGSTCVL 336 (370)
T ss_dssp GGCCTTCEEES-C---C-EEEEEE-EEEEEECTTSCCBCT--TCEEEEEETTEEEEEEEEEEEETTEEESCBCTTCEEEE
T ss_pred HHcCCceEEEC-C---C-ceeEEE-EEEEEEECCCCCCCC--CCEEEEEEcCCEEEEEEEEEEeCCCcceeecCCCEEEE
Confidence 35566777765 2 2 223343 455778754 22222 2233333444446777764310 0 1112256
Q ss_pred EEEecCCccCCCCCceEEEEeCC---EEEEeeEEe
Q 042717 350 VVQLSEDDQGLAAGQFAAFYQGT---RCIGSGVIL 381 (474)
Q Consensus 350 ~v~f~ep~~avapGQ~av~Y~g~---~~lGgG~I~ 381 (474)
+++|.+| -++.+|+..++-++. +.+|+|.|.
T Consensus 337 ~l~~~~p-i~~~~~~rfilr~~~~~~~tig~G~~~ 370 (370)
T 2elf_A 337 ELSGNKK-LAYSKQDRFLLANLDLTQRFAAYGFSK 370 (370)
T ss_dssp EEEEEEE-EEECTTSCEEEECTTSSSCEEEEEEEC
T ss_pred EEEECcE-EEEeCCCEEEEEECCCCCEEEEEEEeC
Confidence 7788888 466799988888755 699999874
No 98
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=41.25 E-value=25 Score=30.03 Aligned_cols=30 Identities=23% Similarity=0.142 Sum_probs=24.2
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCc-EE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHS-CT 46 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~e-V~ 46 (474)
+.++|+|-+.+|..|..++..|++.||+ |.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~ 109 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAY 109 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEE
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceE
Confidence 4567888888899999999999999994 53
No 99
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=41.15 E-value=1.6e+02 Score=24.74 Aligned_cols=58 Identities=9% Similarity=0.010 Sum_probs=39.6
Q ss_pred CCeEEEEEccc----hhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcch
Q 042717 18 GLKVAVLLSGG----VDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTD 92 (474)
Q Consensus 18 ~~kVlValSGG----vDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~ 92 (474)
..||+++.-|| .=-.+++.+|...||+|+-+-.+. ..+.+.+.+.+.+..+..+....
T Consensus 3 ~~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~-----------------p~e~~v~~a~~~~~d~v~lS~~~ 64 (137)
T 1ccw_A 3 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLS-----------------PQELFIKAAIETKADAILVSSLY 64 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEE-----------------CHHHHHHHHHHHTCSEEEEEECS
T ss_pred CCEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCC-----------------CHHHHHHHHHhcCCCEEEEEecC
Confidence 35789988876 223577788899999997433322 13455667777888888887653
No 100
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=40.90 E-value=48 Score=38.84 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=32.4
Q ss_pred CCEEEEEecCCccCCCCCceEEEEeCCEEEEeeEEeeecc
Q 042717 346 ENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILESWD 385 (474)
Q Consensus 346 ~~~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I~~~~~ 385 (474)
...++++|.+| -++.+|+-.+|=++...+|+|+|.....
T Consensus 640 ~a~V~L~l~~P-i~ve~g~RFiLRd~grTIG~G~V~~v~~ 678 (1289)
T 3avx_A 640 NIKMVVTLIHP-IAMDDGLRFAIREGGRTVGAGVVAKVLS 678 (1289)
T ss_dssp CCEEEEEEEEE-EECCTTCEEEEEETTEEEEEEEEEEECC
T ss_pred EEEEEEEECce-EEEccCCEEEEEeCCeEEEEEEEeeech
Confidence 35678889998 4677999999988889999999987654
No 101
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=40.00 E-value=26 Score=28.06 Aligned_cols=28 Identities=36% Similarity=0.420 Sum_probs=23.6
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
+.+.|+|-..+|..|..++.+|++.||+
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~ 78 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFE 78 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCS
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCc
Confidence 3456888778889999999999999996
No 102
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=39.58 E-value=28 Score=31.73 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=23.4
Q ss_pred CeEEEEEccchhHHHHHHHH---HHcCCcEEEEE
Q 042717 19 LKVAVLLSGGVDSSVALRLL---HSAGHSCTAFY 49 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LL---ke~G~eV~gv~ 49 (474)
+||++++||++.+.-+..++ ++.|++|..+.
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~g~~V~vv~ 35 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEELDFSVDLVI 35 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 58999999998876665544 55689987654
No 103
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=39.38 E-value=27 Score=28.80 Aligned_cols=28 Identities=29% Similarity=0.182 Sum_probs=23.8
Q ss_pred CCCeEEEEEccchh--HHHHHHHHHHcCCc
Q 042717 17 KGLKVAVLLSGGVD--SSVALRLLHSAGHS 44 (474)
Q Consensus 17 ~~~kVlValSGGvD--Ssvaa~LLke~G~e 44 (474)
+.++|+|-..+|.. |..++..|++.||+
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~ 99 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFE 99 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCE
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCe
Confidence 35678888888888 88999999999997
No 104
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=38.87 E-value=19 Score=30.27 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=25.2
Q ss_pred CCCCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 16 ~~~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
.+.++|+|-+-.|.-|..++.+|++.||+
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~G~~ 100 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALNGFK 100 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHHTCS
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHcCCc
Confidence 34577999888899999999999999995
No 105
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=38.60 E-value=2e+02 Score=26.61 Aligned_cols=36 Identities=11% Similarity=0.054 Sum_probs=26.0
Q ss_pred CCCeEEEEEccchh-------HHHHHH----HHHHcCCcEEEEEEEc
Q 042717 17 KGLKVAVLLSGGVD-------SSVALR----LLHSAGHSCTAFYLKI 52 (474)
Q Consensus 17 ~~~kVlValSGGvD-------Ssvaa~----LLke~G~eV~gv~~~~ 52 (474)
..++|+|++.|... |.-++. +++..+-+++.+|+..
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~ 179 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHP 179 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEec
Confidence 45799999999887 554443 3344588999998864
No 106
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=38.40 E-value=27 Score=29.23 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=24.6
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
+.++|+|-+.+|..|..++..|++.||+
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~ 117 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYS 117 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCC
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCC
Confidence 4567888888899999999999999985
No 107
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=37.79 E-value=29 Score=29.36 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=24.5
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCc-E
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHS-C 45 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~e-V 45 (474)
+.++|+|-+.+|.-|..++..|++.||+ |
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v 110 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTI 110 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCE
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcce
Confidence 4567888888888999999999999994 5
No 108
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=37.50 E-value=35 Score=29.07 Aligned_cols=29 Identities=14% Similarity=0.059 Sum_probs=22.9
Q ss_pred CCCeEEEEEccc--hhHHHHHHHHHHcCCcE
Q 042717 17 KGLKVAVLLSGG--VDSSVALRLLHSAGHSC 45 (474)
Q Consensus 17 ~~~kVlValSGG--vDSsvaa~LLke~G~eV 45 (474)
+.++|+|-..+| ..|..++.+|++.||+|
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v 101 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRV 101 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEE
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeE
Confidence 445677766666 79999999999999963
No 109
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=37.40 E-value=33 Score=28.61 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=25.4
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCc-EE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHS-CT 46 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~e-V~ 46 (474)
+.++|+|-..+|.-|..++.+|++.||+ |.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~ 115 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVA 115 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEE
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeE
Confidence 4567888888899999999999999995 53
No 110
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=37.31 E-value=35 Score=27.23 Aligned_cols=30 Identities=23% Similarity=0.121 Sum_probs=24.7
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCc-EE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHS-CT 46 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~e-V~ 46 (474)
+.++|+|-..+|..|..++..|++.||+ |.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~ 87 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVY 87 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEE
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEE
Confidence 3467888888888999999999999995 54
No 111
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=37.28 E-value=49 Score=30.15 Aligned_cols=101 Identities=11% Similarity=0.108 Sum_probs=50.6
Q ss_pred EecCCCeEEEecCCCCccceeeEEEEcceeeccCCCcccccceeeeeccCCCccceEEEEeee-----------------
Q 042717 279 KDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHV----------------- 341 (474)
Q Consensus 279 ~d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~~~~~~~~~~~kiR~~~~~~~c~v~~~~~----------------- 341 (474)
+|...+.++...+.. + ...+.|. ..+.|+...++-. ......+.+...-.+|++.....
T Consensus 77 ~di~rG~vl~~~~~~-~-~~~~~f~-a~v~~l~~~~~i~-~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l 152 (204)
T 3e1y_E 77 EEILPGFILCDPNNL-C-HSGRTFD-AQIVIIEHKSIIC-PGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFV 152 (204)
T ss_dssp SCCCTTCEEBCSSSC-C-CCCSEEE-EEEECCSCCSCCC-TTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCC
T ss_pred HHCccceEEECCCCC-C-chhEEEE-EEEEEeCCCCccC-CCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCc
Confidence 456667777765432 1 1233443 4577886542211 11222233333335565543210
Q ss_pred ecCCCCEEEEEecCCccCCCC-------CceEEEEeCCEEEEeeEEeeecc
Q 042717 342 EDGGENIAVVQLSEDDQGLAA-------GQFAAFYQGTRCIGSGVILESWD 385 (474)
Q Consensus 342 ~~~~~~~~~v~f~ep~~avap-------GQ~av~Y~g~~~lGgG~I~~~~~ 385 (474)
..++...+.+++.+|. ++.+ |.+++ -|.+.-+|+|+|.....
T Consensus 153 ~~gd~a~v~l~~~~pi-~~e~~~~~~~~Grfil-rd~~~Tva~G~V~~v~~ 201 (204)
T 3e1y_E 153 KQDQVCIARLRTAGTI-CLETFKDFPQMGRFTL-RDEGKTIAIGKVLKLVP 201 (204)
T ss_dssp CTTCEEEEEEEESSCC-CCCCTTSSGGGTEEEE-ECSSSCCEEEEEEEECC
T ss_pred CCCCEEEEEEEECCeE-EEEEcccCcCCCCEEE-EECCcEEEEEEEEEEec
Confidence 0001124566777773 4444 55555 46678899999986643
No 112
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=36.37 E-value=57 Score=30.85 Aligned_cols=55 Identities=29% Similarity=0.241 Sum_probs=39.4
Q ss_pred CeEEEEEcc----chhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEE
Q 042717 19 LKVAVLLSG----GVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLE 86 (474)
Q Consensus 19 ~kVlValSG----GvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~ 86 (474)
.+|+|. .| |-|-.++|.+|++.|++|..+..... ....+...+.+.++.+|+++.
T Consensus 59 ~~v~Vl-cG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~------------~~~~~~~~~~~~~~~~g~~~~ 117 (246)
T 1jzt_A 59 KHVFVI-AGPGNNGGDGLVCARHLKLFGYNPVVFYPKRS------------ERTEFYKQLVHQLNFFKVPVL 117 (246)
T ss_dssp CEEEEE-ECSSHHHHHHHHHHHHHHHTTCCEEEECCCCC------------TTCHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEE-ECCCCCHHHHHHHHHHHHHCCCeEEEEEcCCC------------CCCHHHHHHHHHHHHcCCcEE
Confidence 466654 45 78999999999999999987543210 013556667778889999864
No 113
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=36.19 E-value=39 Score=27.16 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=27.8
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEc
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKI 52 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~ 52 (474)
+.++|+|-..+|.-|..++.+|++.||+. ..++-
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~--~~l~G 88 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTP--YYLEG 88 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCC--EEEES
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCE--EEecC
Confidence 45678888888999999999999999986 45553
No 114
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=35.41 E-value=22 Score=32.75 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=24.8
Q ss_pred CCCCeEEEEEccchhHH-HH---HHHHHHcCCcEEEEEE
Q 042717 16 QKGLKVAVLLSGGVDSS-VA---LRLLHSAGHSCTAFYL 50 (474)
Q Consensus 16 ~~~~kVlValSGGvDSs-va---a~LLke~G~eV~gv~~ 50 (474)
.+++||+|++||+.-.. -+ +..|++.|++|..+.-
T Consensus 5 l~~k~I~lgiTGs~aa~~k~~~ll~~L~~~g~eV~vv~T 43 (201)
T 3lqk_A 5 FAGKHVGFGLTGSHCTYHEVLPQMERLVELGAKVTPFVT 43 (201)
T ss_dssp CTTCEEEEECCSCGGGGGGTHHHHHHHHHTTCEEEEECS
T ss_pred cCCCEEEEEEEChHHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence 35689999999997555 33 4455667999876543
No 115
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=33.99 E-value=28 Score=31.54 Aligned_cols=33 Identities=3% Similarity=-0.008 Sum_probs=24.7
Q ss_pred CeEEEEEccchhHHHHHHHHH---HcCCcEEEEEEE
Q 042717 19 LKVAVLLSGGVDSSVALRLLH---SAGHSCTAFYLK 51 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLk---e~G~eV~gv~~~ 51 (474)
+||++++|||....-+..+++ +.|++|..+.-.
T Consensus 3 k~IllgvTGs~aa~k~~~l~~~L~~~g~~V~vv~T~ 38 (181)
T 1g63_A 3 GKLLICATASINVININHYIVELKQHFDEVNILFSP 38 (181)
T ss_dssp CCEEEEECSCGGGGGHHHHHHHHTTTSSCEEEEECG
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEch
Confidence 589999999998876665554 458998766543
No 116
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=33.90 E-value=29 Score=31.27 Aligned_cols=33 Identities=21% Similarity=0.165 Sum_probs=24.5
Q ss_pred CCeEEEEEccchhHHHHHHHHH---HcCCcEEEEEE
Q 042717 18 GLKVAVLLSGGVDSSVALRLLH---SAGHSCTAFYL 50 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLk---e~G~eV~gv~~ 50 (474)
.+||++++|||.-..-+..+++ +.|++|..+.-
T Consensus 5 ~k~IllgvTGs~aa~k~~~ll~~L~~~g~~V~vv~T 40 (175)
T 3qjg_A 5 GENVLICLCGSVNSINISHYIIELKSKFDEVNVIAS 40 (175)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHTTTCSEEEEEEC
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3799999999998776555554 45899876643
No 117
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=32.24 E-value=29 Score=32.12 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=23.1
Q ss_pred CCCCeEEEEEccchhHHHHHHH---HHH-cCCcEEEEE
Q 042717 16 QKGLKVAVLLSGGVDSSVALRL---LHS-AGHSCTAFY 49 (474)
Q Consensus 16 ~~~~kVlValSGGvDSsvaa~L---Lke-~G~eV~gv~ 49 (474)
..++||+|++|||+...-+..+ |++ .|++|..+.
T Consensus 17 l~~k~IllgvTGsiaa~k~~~lv~~L~~~~g~~V~vv~ 54 (206)
T 1qzu_A 17 ERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVT 54 (206)
T ss_dssp CSSEEEEEEECSSGGGGTHHHHHHHHC---CEEEEEEE
T ss_pred cCCCEEEEEEeChHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3567899999999987655444 455 577876654
No 118
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=32.23 E-value=40 Score=28.64 Aligned_cols=28 Identities=36% Similarity=0.420 Sum_probs=24.1
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
+.+.|+|-..+|..|..++.+|++.||+
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~ 82 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFE 82 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCC
Confidence 4467888888899999999999999995
No 119
>3t8j_A Purine nucleosidase, (IUNH-1); nucleoside hydrolase, thermostable protein, open (alpha,beta structure, rossmann fold, NH-fold; 1.60A {Sulfolobus solfataricus}
Probab=31.13 E-value=1.6e+02 Score=28.60 Aligned_cols=59 Identities=19% Similarity=0.157 Sum_probs=44.4
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcC--CCEEE
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD--VPLEV 87 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LG--Ipl~v 87 (474)
+||++=.-.|+|=++|+.++..-..+|.|++...+.. ..+.....+.++.+.+| ||.+.
T Consensus 2 ~kvIiDtD~G~DDa~Al~~a~~p~iel~gIttv~GN~----------~~~~~~~Na~~ll~~~g~diPV~~ 62 (311)
T 3t8j_A 2 RHFIIDCDTAEDDVLSLYLLLKNNIDVVAVTIVEGNI----------SYEQEVKNALWALEQVNREIPVYP 62 (311)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCEEEEEEECSSSS----------CHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred ceEEEECCCChHHHHHHHHHcCCCCEEEEEEEccCCC----------CHHHHHHHHHHHHHHcCCCCCEEE
Confidence 5788888899999998888755578999999876532 23556778888888886 55543
No 120
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=30.56 E-value=24 Score=32.31 Aligned_cols=33 Identities=15% Similarity=0.091 Sum_probs=23.8
Q ss_pred CCCeEEEEEccchhHHHHHHH---HHHcCCcEEEEE
Q 042717 17 KGLKVAVLLSGGVDSSVALRL---LHSAGHSCTAFY 49 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~L---Lke~G~eV~gv~ 49 (474)
+++||++++|||.-..-+..+ |++.|++|..+.
T Consensus 7 ~~k~IllgvTGs~aa~k~~~l~~~L~~~g~~V~vv~ 42 (194)
T 1p3y_1 7 KDKKLLIGICGSISSVGISSYLLYFKSFFKEIRVVM 42 (194)
T ss_dssp GGCEEEEEECSCGGGGGTHHHHHHHTTTSSEEEEEE
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 357999999999977654444 455588887553
No 121
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=30.52 E-value=28 Score=32.97 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=49.2
Q ss_pred HHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEE-EcchHHHHhhHhhhHHHHhcCCC
Q 042717 33 VALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVV-HLTDEYWKNVVSYIIEEYRCGRT 111 (474)
Q Consensus 33 vaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vv-d~~~~f~~~V~~~~i~~y~~G~t 111 (474)
.+-..+...|....-+.+. .. .+.+.++..+..+.+||...+. |+..+ |.+.+.
T Consensus 54 ~a~~~A~~LGIpl~~v~~~--g~-----------~~~e~e~l~~~l~~~~i~~vv~Gdi~s~------------yqr~r~ 108 (237)
T 3rjz_A 54 LTDLQARALGIPLVKGFTQ--GE-----------KEKEVEDLKRVLSGLKIQGIVAGALASK------------YQRKRI 108 (237)
T ss_dssp HHHHHHHHHTCCEEEEEC-------------------CHHHHHHHHTTSCCSEEECC---CC------------SHHHHH
T ss_pred HHHHHHHHcCCCEEEEECC--CC-----------chHHHHHHHHHHHhcCCcEEEECCcchH------------HHHHHH
Confidence 3444555568776544432 10 1245677777778888877654 33222 233334
Q ss_pred CCcccccchHHHH-------HHHHHHHHHcCCCEEEEceecc
Q 042717 112 PNPDVLCNTRIKF-------GAFMDAISSMEFDYVASGHYAK 146 (474)
Q Consensus 112 pNPci~Cnr~iKf-------~~l~~~A~~~Gad~IATGH~a~ 146 (474)
+|+|..|+-...| ..+++-+-+.|++++++...+.
T Consensus 109 e~vc~~~gl~~~~PLW~~d~~~Ll~e~i~~G~~aiiv~v~~~ 150 (237)
T 3rjz_A 109 EKVAKELGLEVYTPAWGRDAKEYMRELLNLGFKIMVVGVSAY 150 (237)
T ss_dssp HHHHHHTTCEEECSSSSCCHHHHHHHHHHTTCEEEEEEEEST
T ss_pred HHHHHHcCCEEEccccCCCHHHHHHHHHHCCCEEEEEEEecC
Confidence 5556555433333 4556656678999999998764
No 122
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=29.44 E-value=2.7e+02 Score=25.89 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=26.3
Q ss_pred CCCeEEEEEccchhHHHHH----HHHHHcCCcEEEEEEE
Q 042717 17 KGLKVAVLLSGGVDSSVAL----RLLHSAGHSCTAFYLK 51 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa----~LLke~G~eV~gv~~~ 51 (474)
..++|+|++.|.-.|.-++ .+++..|-+++.+|+.
T Consensus 6 ~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~ 44 (319)
T 3olq_A 6 KYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPV 44 (319)
T ss_dssp CSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEE
T ss_pred ccceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 3478999999988875443 4555568899999985
No 123
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=27.70 E-value=64 Score=26.21 Aligned_cols=72 Identities=10% Similarity=0.164 Sum_probs=40.0
Q ss_pred CeEEEEEccchhHHHHHHHHHH----cCCcEEEEEEEcCCCCC-ccccc---CCCCCHHhHHHHHHHHHHcCCCEEEEEc
Q 042717 19 LKVAVLLSGGVDSSVALRLLHS----AGHSCTAFYLKIWFQED-FENFW---TECPWEEDMKYAKAVCDQVDVPLEVVHL 90 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke----~G~eV~gv~~~~~~~~~-~~~~~---~~c~s~~d~~~a~~va~~LGIpl~vvd~ 90 (474)
+||++++++|.=||+++.-+++ .|+++.--+.....-.. ...++ ....-....+..++.+...++|..+++.
T Consensus 5 mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~~~~D~Ii~t~~l~~~~~~~~~~~~~~~~pv~~I~~ 84 (109)
T 2l2q_A 5 MNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEVVDRFDVVLLAPQSRFNKKRLEEITKPKGIPIEIINT 84 (109)
T ss_dssp EEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHHTTTCSEEEECSCCSSHHHHHHHHHHHHTCCEEECCH
T ss_pred eEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhcCCCCEEEECCccHHHHHHHHHHhcccCCCEEEECh
Confidence 6799999999999977766655 37775533333221100 00000 0001112355566666677788777764
No 124
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=27.29 E-value=3.2e+02 Score=28.16 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=41.7
Q ss_pred eEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHc-CCCEEEEEc
Q 042717 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQV-DVPLEVVHL 90 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~L-GIpl~vvd~ 90 (474)
.|.+++.++.|+.-.+..|.+.|.+++.++..++. +..-.+.++++.+.+ ++|+..-+.
T Consensus 219 ~v~aavG~~~~~~~~a~~l~~aG~d~I~id~a~g~------------~~~~~~~v~~i~~~~p~~~Vi~g~v 278 (490)
T 4avf_A 219 RVGAAVGTGADTGERVAALVAAGVDVVVVDTAHGH------------SKGVIERVRWVKQTFPDVQVIGGNI 278 (490)
T ss_dssp CCEEEECSSTTHHHHHHHHHHTTCSEEEEECSCCS------------BHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred eeeeeeccccchHHHHHHHhhcccceEEecccCCc------------chhHHHHHHHHHHHCCCceEEEeee
Confidence 46667777778888888888999998766654321 345567788888888 777766443
No 125
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=26.36 E-value=43 Score=31.02 Aligned_cols=32 Identities=16% Similarity=0.066 Sum_probs=22.5
Q ss_pred CCCeEEEEEccchhHHHHH---HHHHHcCCcEEEEE
Q 042717 17 KGLKVAVLLSGGVDSSVAL---RLLHSAGHSCTAFY 49 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa---~LLke~G~eV~gv~ 49 (474)
+++||+|++|||+-..-++ ..|++.| +|..+.
T Consensus 18 ~~k~IllgvTGsiaa~k~~~ll~~L~~~g-~V~vv~ 52 (209)
T 1mvl_A 18 RKPRVLLAASGSVAAIKFGNLCHCFTEWA-EVRAVV 52 (209)
T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHHHTTS-EEEEEE
T ss_pred CCCEEEEEEeCcHHHHHHHHHHHHHhcCC-CEEEEE
Confidence 4578999999999766554 4445567 876554
No 126
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=25.81 E-value=79 Score=30.31 Aligned_cols=53 Identities=28% Similarity=0.372 Sum_probs=38.6
Q ss_pred CeEEEEEcc----chhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCE
Q 042717 19 LKVAVLLSG----GVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPL 85 (474)
Q Consensus 19 ~kVlValSG----GvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl 85 (474)
.+|+|. .| |-|-.++|.+|.+.|++|..+.... . ...+.....+.++.+|+++
T Consensus 80 ~~VlVl-cG~GNNGGDGlv~AR~L~~~G~~V~V~~~~~---~----------~~~~~~~~~~~~~~~g~~~ 136 (265)
T 2o8n_A 80 PTVLVI-CGPGNNGGDGLVCARHLKLFGYQPTIYYPKR---P----------NKPLFTGLVTQCQKMDIPF 136 (265)
T ss_dssp CEEEEE-ECSSHHHHHHHHHHHHHHHTTCEEEEECCSC---C----------SSHHHHHHHHHHHHTTCCB
T ss_pred CeEEEE-ECCCCCHHHHHHHHHHHHHCCCcEEEEEeCC---C----------CCHHHHHHHHHHHHcCCcE
Confidence 466654 45 7899999999999999988754321 0 1355666778888999875
No 127
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=25.14 E-value=2.5e+02 Score=25.82 Aligned_cols=93 Identities=11% Similarity=0.060 Sum_probs=52.4
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcc---hHHHHhhHhhhHHHHhcCC
Q 042717 34 ALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLT---DEYWKNVVSYIIEEYRCGR 110 (474)
Q Consensus 34 aa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~---~~f~~~V~~~~i~~y~~G~ 110 (474)
++..+++.|++-+-+..... .. .+..+.+..++.++..|+++..+... ..|.+ . ....+..+.
T Consensus 26 ~l~~~~~~G~~~vEl~~~~~--~~--------~~~~~~~~~~~~l~~~gl~~~~~~~~~~g~~~~~-~---~~~~~~~~~ 91 (290)
T 3tva_A 26 HLEVAQDLKVPTVQVHAPHP--HT--------RTREHAQAFRAKCDAAGIQVTVIFGGFDGESYAD-I---PTTARTVGL 91 (290)
T ss_dssp CHHHHHHTTCSEEEEECCCG--GG--------CSHHHHHHHHHHHHHTTCEEEEEECCCTTCCCSS-H---HHHHHHSSS
T ss_pred HHHHHHHcCCCEEEecCCCC--Cc--------CCHHHHHHHHHHHHHcCCEEEEEeeccCCccccc-c---cccccccCC
Confidence 56678889998655554211 10 13577889999999999998887542 00110 0 001111121
Q ss_pred CCCcccccchHHHHHHHHHHHHHcCCCEEEE
Q 042717 111 TPNPDVLCNTRIKFGAFMDAISSMEFDYVAS 141 (474)
Q Consensus 111 tpNPci~Cnr~iKf~~l~~~A~~~Gad~IAT 141 (474)
++|-..-...-.+...+++|.++|+.+|.+
T Consensus 92 -~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~ 121 (290)
T 3tva_A 92 -VPLETRASRVAEMKEISDFASWVGCPAIGL 121 (290)
T ss_dssp -CSTTTHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 122211111123566778899999999876
No 128
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=25.11 E-value=3.7e+02 Score=28.06 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=23.3
Q ss_pred CCCeEEEEEccchhHH-HHHHHHHHcCCcEEEEEEE
Q 042717 17 KGLKVAVLLSGGVDSS-VALRLLHSAGHSCTAFYLK 51 (474)
Q Consensus 17 ~~~kVlValSGGvDSs-vaa~LLke~G~eV~gv~~~ 51 (474)
.++||+|. |+-|=+ -++..|.+.|.+|+++...
T Consensus 363 ~GKrvaI~--gd~~~~~~la~fL~elGm~vv~v~~~ 396 (523)
T 3u7q_B 363 HGKRFALW--GDPDFVMGLVKFLLELGCEPVHILCH 396 (523)
T ss_dssp TTCEEEEE--CSHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCEEEEE--CCchHHHHHHHHHHHcCCEEEEEEeC
Confidence 46788877 666633 3556777899999887764
No 129
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=24.78 E-value=62 Score=30.98 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=26.5
Q ss_pred CCCCeEEEEEccchhHHHHHHHHHHcCC-cEE
Q 042717 16 QKGLKVAVLLSGGVDSSVALRLLHSAGH-SCT 46 (474)
Q Consensus 16 ~~~~kVlValSGGvDSsvaa~LLke~G~-eV~ 46 (474)
.++++|++-..||.-|..++.+|++.|| +|.
T Consensus 179 ~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~ 210 (265)
T 4f67_A 179 KKDKKIAMFCTGGIRCEKTTAYMKELGFEHVY 210 (265)
T ss_dssp GTTSCEEEECSSSHHHHHHHHHHHHHTCSSEE
T ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCCCEE
Confidence 4567899999999999999999999999 453
No 130
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=24.78 E-value=76 Score=31.31 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=36.3
Q ss_pred CCeEEEEEccchhHHH-HHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEE
Q 042717 18 GLKVAVLLSGGVDSSV-ALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVH 89 (474)
Q Consensus 18 ~~kVlValSGGvDSsv-aa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd 89 (474)
++||++. |+.+=++ ++..|.+.|++|.+|.-.. +.++ . ...+++.|+++|||++..+
T Consensus 22 ~mrIvf~--G~~~fa~~~L~~L~~~~~~i~~Vvt~p-d~~~---------~---~~~v~~~A~~~gIpv~~~~ 79 (329)
T 2bw0_A 22 SMKIAVI--GQSLFGQEVYCHLRKEGHEVVGVFTVP-DKDG---------K---ADPLGLEAEKDGVPVFKYS 79 (329)
T ss_dssp CCEEEEE--CCHHHHHHHHHHHHHTTCEEEEEEECC-CCSS---------C---CCHHHHHHHHHTCCEEECS
T ss_pred CCEEEEE--cCcHHHHHHHHHHHHCCCeEEEEEeCC-CcCC---------C---CCHHHHHHHHcCCCEEecC
Confidence 3788877 6655443 4566667789998886531 1110 0 1134578999999988764
No 131
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=24.71 E-value=2.9e+02 Score=25.40 Aligned_cols=106 Identities=11% Similarity=0.140 Sum_probs=56.2
Q ss_pred CCCCCCeEEEEEc-------c---chhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCC
Q 042717 14 PHQKGLKVAVLLS-------G---GVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDV 83 (474)
Q Consensus 14 ~~~~~~kVlValS-------G---GvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGI 83 (474)
+....+|+.+..| . ..|-.-++..+++.|++-+-+..... ...+.+.+++.++..|+
T Consensus 16 ~~~~~mklg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~-------------~~~~~~~~~~~l~~~gl 82 (290)
T 2zvr_A 16 PRGSHMKLSLVISTSDAAFDALAFKGDLRKGMELAKRVGYQAVEIAVRDP-------------SIVDWNEVKILSEELNL 82 (290)
T ss_dssp -----CEEEEEECCCC-------CHHHHHHHHHHHHHHTCSEEEEECSCG-------------GGSCHHHHHHHHHHHTC
T ss_pred cCCCCceeEEecccchhhccccccccCHHHHHHHHHHhCCCEEEEcCCCc-------------chhhHHHHHHHHHHcCC
Confidence 3445567777663 1 12223456677888998654443210 12457788999999999
Q ss_pred CEEEEEcchHHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEE
Q 042717 84 PLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140 (474)
Q Consensus 84 pl~vvd~~~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IA 140 (474)
++..+.....|... +..-..|+|...-...-.+...+++|.++|+.+|.
T Consensus 83 ~~~~~~~~~p~~~~--------~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~ 131 (290)
T 2zvr_A 83 PICAIGTGQAYLAD--------GLSLTHPNDEIRKKAIERVVKHTEVAGMFGALVII 131 (290)
T ss_dssp CEEEEECTHHHHTT--------CCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEeccCccccC--------CCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 99877763222100 00000122211111111356677889999999987
No 132
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=24.29 E-value=88 Score=30.44 Aligned_cols=87 Identities=13% Similarity=0.163 Sum_probs=49.8
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhh
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNV 98 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V 98 (474)
+||+++-|+-. +...+..|.+.+++|.+|..+.. ... .......+++.|+++|||++..+-..
T Consensus 1 mrivf~gt~~f-a~~~L~~L~~~~~~i~~Vvt~~d-~~~---------g~~~~~~v~~~A~~~gIpv~~~~~~~------ 63 (305)
T 2bln_A 1 MKTVVFAYHDM-GCLGIEALLAAGYEISAIFTHTD-NPG---------EKAFYGSVARLAAERGIPVYAPDNVN------ 63 (305)
T ss_dssp CEEEEEECHHH-HHHHHHHHHHTTCEEEEEECCCC----------------CCCCHHHHHHHHTCCEECCSCCC------
T ss_pred CEEEEEEcCHH-HHHHHHHHHHCCCcEEEEEcCCC-CCC---------CCcCccHHHHHHHHcCCCEECCCcCC------
Confidence 47777766531 23334445566999998875421 100 00001237789999999987543210
Q ss_pred HhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceeccc
Q 042717 99 VSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 99 ~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
...+.+..++.+.|+++.-.|..+
T Consensus 64 -------------------------~~~~~~~l~~~~~Dliv~~~y~~i 87 (305)
T 2bln_A 64 -------------------------HPLWVERIAQLSPDVIFSFYYRHL 87 (305)
T ss_dssp -------------------------SHHHHHHHHHTCCSEEEEESCCSC
T ss_pred -------------------------cHHHHHHHHhcCCCEEEEeccccc
Confidence 112345556678899888877654
No 133
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=23.48 E-value=84 Score=33.56 Aligned_cols=60 Identities=12% Similarity=0.066 Sum_probs=34.6
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEE
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVH 89 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd 89 (474)
+||+++-|+-.=-.. +..|.+.+++|.+|.-+... . ........+++.|+++|||++..+
T Consensus 1 ~ri~~~~s~~~~~~~-l~~l~~~~~~i~~v~t~~~~-~---------~~~~~~~~~~~~a~~~~ip~~~~~ 60 (660)
T 1z7e_A 1 MKTVVFAYHDMGCLG-IEALLAAGYEISAIFTHTDN-P---------GEKAFYGSVARLAAERGIPVYAPD 60 (660)
T ss_dssp CEEEEEECHHHHHHH-HHHHHHTTCEEEEEECCCC------------------CCHHHHHHHHTCCEECCS
T ss_pred CEEEEEEeCHHHHHH-HHHHHhCCCCEEEEEeCCCC-C---------ccCcCccHHHHHHHHcCCCEeccC
Confidence 478888887432233 33344558999988754211 0 000112247889999999987653
No 134
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=23.39 E-value=70 Score=29.29 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=22.6
Q ss_pred CeEEEEEccchhHHHHHH---HHHHc-CCcEEEEE
Q 042717 19 LKVAVLLSGGVDSSVALR---LLHSA-GHSCTAFY 49 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~---LLke~-G~eV~gv~ 49 (474)
+||++++|||+-+.-+.. .|++. |++|..+.
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L~~~~g~~V~vv~ 35 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVM 35 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHhccCCEEEEEE
Confidence 489999999987655554 45566 88887654
No 135
>2mas_A Inosine-uridine nucleoside N-ribohydrolase; purine nucleoside hydrolase, IU-NH, purine nucleosidase; HET: PIR; 2.30A {Crithidia fasciculata} SCOP: c.70.1.1 PDB: 1mas_A* 1ezr_A
Probab=22.66 E-value=2.1e+02 Score=27.74 Aligned_cols=59 Identities=24% Similarity=0.240 Sum_probs=43.2
Q ss_pred CeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcC---CCEEE
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD---VPLEV 87 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LG---Ipl~v 87 (474)
+||++=.=.|+|=++|+.++... ..+|.|++...+.. ..+.....+.++.+.+| ||.+.
T Consensus 2 ~~vIiDtD~GiDDa~AL~~al~~p~i~l~gIt~v~GN~----------~~~~~~~na~~ll~~~g~~dIPV~~ 64 (314)
T 2mas_A 2 KKIILDCDPGLDDAVAILLAHGNPEIELLAITTVVGNQ----------TLAKVTRNAQLVADIAGITGVPIAA 64 (314)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHCTTEEEEEEEECSSSS----------CHHHHHHHHHHHHHHTTCCSCCEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCEEEEEEEccCCc----------CHHHHHHHHHHHHHHhCCCCCCEEe
Confidence 46888888899988877766655 68999999876532 23456788889999887 55543
No 136
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=22.21 E-value=81 Score=29.36 Aligned_cols=29 Identities=7% Similarity=0.043 Sum_probs=25.1
Q ss_pred CCCCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 16 ~~~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
.+.++|+|-+.+|.-|+.++..|++.||+
T Consensus 221 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~ 249 (271)
T 1e0c_A 221 TPDKEIVTHCQTHHRSGLTYLIAKALGYP 249 (271)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHHTTCS
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHcCCC
Confidence 34578999888999999999999999995
No 137
>1yoe_A Hypothetical protein YBEK; pyrimidine nucleoside hydrolase, bacterial nucleosidase, RIB enzyme-product complex, hydrolase; HET: RIB; 1.78A {Escherichia coli} PDB: 3g5i_A*
Probab=21.77 E-value=2.1e+02 Score=27.82 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=45.7
Q ss_pred CCCCeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcC---CCEEE
Q 042717 16 QKGLKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD---VPLEV 87 (474)
Q Consensus 16 ~~~~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LG---Ipl~v 87 (474)
.+.+||++=.-.|+|=++|+.++... ..+|.|++...+.. ..+.....+.++.+.+| ||.+.
T Consensus 11 ~~~~~viiD~D~GiDDa~AL~~al~~p~i~l~gIttv~GN~----------~~~~~~~Na~~ll~~~g~~dIPV~~ 76 (322)
T 1yoe_A 11 GSALPILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQ----------TPEKTLRNVLRMLTLLNRTDIPVAG 76 (322)
T ss_dssp CCCEEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEECSSSS----------CHHHHHHHHHHHHHHTTCTTSCEEE
T ss_pred CCCceEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEcCCCC----------CHHHHHHHHHHHHHHcCCCCCCEEe
Confidence 34568999999999988877776655 58999999876532 23556778888888886 66654
No 138
>2c40_A Inosine-uridine preferring nucleoside hydrolase F protein; spine; 2.2A {Bacillus anthracis}
Probab=21.52 E-value=1.6e+02 Score=28.43 Aligned_cols=59 Identities=24% Similarity=0.177 Sum_probs=43.2
Q ss_pred CeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcC---CCEEE
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD---VPLEV 87 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LG---Ipl~v 87 (474)
+||++=.-.|+|=++|+.++... ..+|.|++...+.. ..+.....+.++.+.+| ||.+.
T Consensus 2 ~kvIiDtD~GiDDa~Al~~al~~p~i~l~gIt~v~GN~----------~~~~~~~na~~ll~~~g~~dIPV~~ 64 (312)
T 2c40_A 2 KKVYFNHDGGVDDLVSLFLLLQMDNVELTGVSVIPADC----------YLEPAMSASRKIIDRFGKNTIEVAA 64 (312)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTCTTEEEEEEEECSSSS----------CHHHHHHHHHHHHHHHCCSCCCEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCEEEEEEEecCCC----------cHHHHHHHHHHHHHHcCCCCCCEec
Confidence 46888888899988877766554 68999999876532 23456778888888887 66654
No 139
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=21.39 E-value=3.1e+02 Score=24.94 Aligned_cols=90 Identities=11% Similarity=0.114 Sum_probs=48.1
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCE--EEEEcchHHHHhhHhhhHHHHhcCCC
Q 042717 34 ALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPL--EVVHLTDEYWKNVVSYIIEEYRCGRT 111 (474)
Q Consensus 34 aa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl--~vvd~~~~f~~~V~~~~i~~y~~G~t 111 (474)
++..+++.|++-+-+...... .. .....+..+.+..++.+++.|+++ ..+... |.-.. ..
T Consensus 17 ~l~~~~~~G~~~iEl~~~~~~--~~---~~~~~~~~~~~~~~~~l~~~gl~~~~~~~h~~--~~~~~-----------~~ 78 (287)
T 2x7v_A 17 VPQDTVNIGGNSFQIFPHNAR--SW---SAKLPSDEAATKFKREMKKHGIDWENAFCHSG--YLINL-----------AS 78 (287)
T ss_dssp HHHHHHHTTCSEEEECSCCCS--SS---CCCCCCHHHHHHHHHHHHHHTCCGGGEEEECC--TTCCT-----------TC
T ss_pred HHHHHHHcCCCEEEEeCCCcc--cc---cccCCCHHHHHHHHHHHHHcCCCcceeEEecc--ccccc-----------CC
Confidence 456678899986555322110 00 001124577888999999999983 222211 10000 01
Q ss_pred CCcccccchHHHHHHHHHHHHHcCCCEEEE
Q 042717 112 PNPDVLCNTRIKFGAFMDAISSMEFDYVAS 141 (474)
Q Consensus 112 pNPci~Cnr~iKf~~l~~~A~~~Gad~IAT 141 (474)
|+|...-...-.+...+++|.++|+.+|.+
T Consensus 79 ~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~ 108 (287)
T 2x7v_A 79 PKDDIWQKSVELLKKEVEICRKLGIRYLNI 108 (287)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 222211111123566778899999999876
No 140
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=21.08 E-value=4.9e+02 Score=23.99 Aligned_cols=82 Identities=12% Similarity=0.003 Sum_probs=51.1
Q ss_pred HHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCC-EEEEEcchHHHHhhHhhhHHHHhcCCCCC
Q 042717 35 LRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP-LEVVHLTDEYWKNVVSYIIEEYRCGRTPN 113 (474)
Q Consensus 35 a~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIp-l~vvd~~~~f~~~V~~~~i~~y~~G~tpN 113 (474)
+..+.++|.+|..+++..+.... . -....-.+.+++.|+.||++ .+.+++.+ +..+.
T Consensus 24 ia~~~~~G~~V~vv~lT~G~~g~-~-----~~~~~R~~E~~~A~~~LGv~~~~~L~~~D----------------~~~~~ 81 (242)
T 2ixd_A 24 IAKYTKQGYEVGICDLTEADLSS-N-----GTIELRKEEAKVAARIMGVKTRLNLAMPD----------------RGLYM 81 (242)
T ss_dssp HHHHHHTTCCEEEEEEECCTTCS-S-----SCHHHHHHHHHHHHHHHTCCEEEEEEECT----------------TCCCC
T ss_pred HHHHHHCCCeEEEEEEcCCCCCC-C-----CCHHHHHHHHHHHHHHcCCCeEEECCCCC----------------CCCCC
Confidence 44556689999999998764311 0 01123455678889999998 46777653 11111
Q ss_pred cccccchHHHHHHHHHHHHHcCCCEEEEcee
Q 042717 114 PDVLCNTRIKFGAFMDAISSMEFDYVASGHY 144 (474)
Q Consensus 114 Pci~Cnr~iKf~~l~~~A~~~Gad~IATGH~ 144 (474)
...+ ...+.++.++...+.|+|.+.
T Consensus 82 -----~~~~-~~~l~~~ir~~~PdvV~t~~~ 106 (242)
T 2ixd_A 82 -----KEEY-IREIVKVIRTYKPKLVFAPYY 106 (242)
T ss_dssp -----CHHH-HHHHHHHHHHHCCSEEEEECS
T ss_pred -----hHHH-HHHHHHHHHHcCCCEEEECCC
Confidence 1223 355677778888999998443
No 141
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=21.04 E-value=1e+02 Score=26.32 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=23.2
Q ss_pred CCeEEEEEccchh---------HHHHHHHHHHcCCcEE
Q 042717 18 GLKVAVLLSGGVD---------SSVALRLLHSAGHSCT 46 (474)
Q Consensus 18 ~~kVlValSGGvD---------Ssvaa~LLke~G~eV~ 46 (474)
.+.|+|-..+|.+ |..++..|++.||+|.
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~ 130 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPL 130 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEE
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEE
Confidence 5678888888854 8889999999999864
No 142
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=20.85 E-value=5e+02 Score=23.95 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCCCEEEEceecc
Q 042717 124 FGAFMDAISSMEFDYVASGHYAK 146 (474)
Q Consensus 124 f~~l~~~A~~~Gad~IATGH~a~ 146 (474)
-..+.++|++.++|.|+.|.+.+
T Consensus 255 ~~~I~~~a~~~~~dLiV~G~~g~ 277 (319)
T 3olq_A 255 EQVIPQVCEELNAGIVVLGILGR 277 (319)
T ss_dssp HHHHHHHHHHTTEEEEEEECCSC
T ss_pred HHHHHHHHHHhCCCEEEEeccCc
Confidence 35678899999999999999864
No 143
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops, aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax} SCOP: c.70.1.1 PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A* 1kie_A* 1r4f_A* 3b9g_A*
Probab=20.58 E-value=1.6e+02 Score=28.95 Aligned_cols=61 Identities=16% Similarity=0.054 Sum_probs=45.3
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHc-C-CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcC-------CCEEE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSA-G-HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD-------VPLEV 87 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~-G-~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LG-------Ipl~v 87 (474)
+..||++=.-.|+|=++|+.++... . .+|.|++...+.. .-+.....+.++++.+| ||.+.
T Consensus 12 ~~~~vilD~DpGiDDa~AL~~al~~p~~iel~gITtv~GN~----------~~~~~~~Nal~lL~~~g~~d~~~~IPV~~ 81 (338)
T 3epw_A 12 SAKNVVLDHDGNLDDFVAMVLLASNTEKVRLIGALCTDADC----------FVENGFNVTGKIMCLMHNNMNLPLFPIGK 81 (338)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHCTTTEEEEEEEECSSSS----------CHHHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_pred ccceEEEECCCChHHHHHHHHHHhCCCCeEEEEEEEeCCCC----------hHHHHHHHHHHHHHHhCCCCCCCccceEe
Confidence 4568999999999999988887766 5 7999999987632 23455677777777765 77664
No 144
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=20.15 E-value=98 Score=25.13 Aligned_cols=34 Identities=9% Similarity=0.065 Sum_probs=25.0
Q ss_pred CeEEEEEccchhHHHHHHHHH----HcCCcEEEEEEEc
Q 042717 19 LKVAVLLSGGVDSSVALRLLH----SAGHSCTAFYLKI 52 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLk----e~G~eV~gv~~~~ 52 (474)
+||++++++|.=||+++.-++ +.|.++..-+...
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~ 41 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPE 41 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECS
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 579999999999998776554 4588765544443
Done!