Query 042720
Match_columns 146
No_of_seqs 192 out of 1601
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 08:47:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158 Cytochrome P450 CYP3/C 100.0 7.5E-37 1.6E-41 238.4 12.6 135 1-139 364-499 (499)
2 KOG0157 Cytochrome P450 CYP4/C 100.0 1.1E-35 2.5E-40 234.6 12.1 134 1-140 362-497 (497)
3 PLN02183 ferulate 5-hydroxylas 100.0 8.1E-35 1.8E-39 230.6 13.6 140 1-141 374-514 (516)
4 PLN00110 flavonoid 3',5'-hydro 100.0 7.5E-35 1.6E-39 230.3 13.1 142 1-145 359-503 (504)
5 PLN02971 tryptophan N-hydroxyl 100.0 6.4E-35 1.4E-39 232.5 12.8 141 1-144 397-539 (543)
6 PLN03234 cytochrome P450 83B1; 100.0 7.7E-35 1.7E-39 229.8 13.0 138 1-138 358-498 (499)
7 PLN03112 cytochrome P450 famil 100.0 2.3E-34 4.9E-39 227.9 13.6 145 1-145 366-514 (514)
8 PLN02687 flavonoid 3'-monooxyg 100.0 2.1E-34 4.6E-39 228.3 12.9 145 1-145 367-515 (517)
9 PLN02169 fatty acid (omega-1)- 100.0 2.8E-34 6.1E-39 226.9 12.9 132 1-138 365-499 (500)
10 PLN02966 cytochrome P450 83A1 100.0 3.1E-34 6.6E-39 226.7 12.8 137 1-137 361-498 (502)
11 PLN02394 trans-cinnamate 4-mon 100.0 4.6E-34 1E-38 225.5 13.0 137 1-139 363-502 (503)
12 PTZ00404 cytochrome P450; Prov 100.0 4.6E-34 9.9E-39 224.5 12.7 129 1-138 353-482 (482)
13 PLN00168 Cytochrome P450; Prov 100.0 4.4E-34 9.5E-39 226.6 12.7 137 1-140 377-518 (519)
14 KOG0156 Cytochrome P450 CYP2 s 100.0 6.3E-34 1.4E-38 223.2 12.1 133 1-139 356-488 (489)
15 PF00067 p450: Cytochrome P450 100.0 3.5E-34 7.6E-39 220.4 10.0 109 1-109 332-440 (463)
16 PLN02655 ent-kaurene oxidase 100.0 2.1E-33 4.7E-38 220.1 12.9 135 1-140 331-465 (466)
17 PLN02290 cytokinin trans-hydro 100.0 2.5E-33 5.3E-38 222.0 13.1 131 1-140 385-516 (516)
18 PLN02738 carotene beta-ring hy 100.0 3.7E-33 7.9E-38 225.3 13.9 137 1-142 460-598 (633)
19 PLN02500 cytochrome P450 90B1 100.0 3.4E-33 7.4E-38 220.1 12.2 129 1-137 354-488 (490)
20 PLN02426 cytochrome P450, fami 100.0 4.3E-33 9.3E-38 220.3 12.6 135 1-139 364-500 (502)
21 PLN03195 fatty acid omega-hydr 100.0 3.6E-33 7.9E-38 221.1 11.6 133 1-139 382-516 (516)
22 PLN03018 homomethionine N-hydr 100.0 1.1E-32 2.3E-37 219.4 14.1 138 1-141 384-526 (534)
23 PLN02774 brassinosteroid-6-oxi 100.0 9.6E-33 2.1E-37 216.3 12.1 126 1-137 337-462 (463)
24 KOG0159 Cytochrome P450 CYP11/ 100.0 8.6E-33 1.9E-37 213.4 10.7 132 1-139 387-518 (519)
25 PLN03141 3-epi-6-deoxocathaste 100.0 1.6E-32 3.5E-37 214.4 12.2 127 1-140 325-451 (452)
26 PLN02302 ent-kaurenoic acid ox 100.0 4.6E-32 9.9E-37 213.3 12.1 130 1-141 361-490 (490)
27 PLN02936 epsilon-ring hydroxyl 100.0 2.1E-31 4.5E-36 210.1 13.1 138 1-143 347-486 (489)
28 PLN02196 abscisic acid 8'-hydr 100.0 9.9E-32 2.1E-36 210.6 11.2 125 1-137 337-461 (463)
29 PLN02987 Cytochrome P450, fami 100.0 2.2E-31 4.8E-36 209.1 13.0 131 1-140 340-470 (472)
30 KOG0684 Cytochrome P450 [Secon 100.0 2.2E-30 4.9E-35 196.8 8.9 134 1-139 344-485 (486)
31 COG2124 CypX Cytochrome P450 [ 99.9 5.9E-28 1.3E-32 186.9 9.7 121 1-138 290-410 (411)
32 PLN02648 allene oxide synthase 99.9 2E-26 4.4E-31 181.3 9.8 105 1-109 344-462 (480)
33 PF12508 DUF3714: Protein of u 72.3 4.7 0.0001 28.7 3.0 21 14-34 74-94 (200)
34 KOG3302 TATA-box binding prote 70.6 2 4.4E-05 30.2 0.8 36 49-84 49-84 (200)
35 cd04518 TBP_archaea archaeal T 69.1 2.9 6.4E-05 29.0 1.4 35 50-84 29-63 (174)
36 PF08492 SRP72: SRP72 RNA-bind 68.5 4 8.7E-05 23.1 1.6 7 53-59 44-50 (59)
37 PF09201 SRX: SRX; InterPro: 64.2 6.4 0.00014 26.2 2.1 22 80-101 19-40 (148)
38 COG2101 SPT15 TATA-box binding 63.9 4.5 9.8E-05 28.1 1.4 36 50-85 35-70 (185)
39 PRK00394 transcription factor; 62.7 5 0.00011 28.0 1.5 34 50-83 28-61 (179)
40 PLN00062 TATA-box-binding prot 55.8 6.9 0.00015 27.3 1.3 55 50-104 29-85 (179)
41 cd00652 TBP_TLF TATA box bindi 54.8 8.1 0.00017 26.8 1.5 56 50-106 29-87 (174)
42 PF14550 Peptidase_U35_2: Puta 53.1 10 0.00022 24.8 1.6 23 13-35 71-93 (122)
43 cd04516 TBP_eukaryotes eukaryo 52.2 8.3 0.00018 26.8 1.2 56 50-105 29-86 (174)
44 TIGR03779 Bac_Flav_CT_M Bacter 45.3 23 0.0005 28.1 2.8 21 15-35 278-298 (410)
45 PF00352 TBP: Transcription fa 44.8 6.8 0.00015 23.6 -0.1 35 50-84 31-65 (86)
46 PRK14759 potassium-transportin 38.7 13 0.00029 17.7 0.4 6 52-57 24-29 (29)
47 PF12444 Sox_N: Sox developmen 37.3 24 0.00053 21.4 1.5 20 90-109 61-80 (84)
48 KOG3506 40S ribosomal protein 37.2 16 0.00034 20.3 0.6 10 73-82 13-22 (56)
49 PF11138 DUF2911: Protein of u 37.2 44 0.00094 22.5 2.8 22 15-36 52-73 (145)
50 PF09604 Potass_KdpF: F subuni 37.2 15 0.00032 17.0 0.4 6 52-57 20-25 (25)
51 PF11227 DUF3025: Protein of u 31.0 25 0.00055 25.2 1.0 25 32-56 186-211 (212)
52 PF02663 FmdE: FmdE, Molybdenu 29.2 57 0.0012 21.2 2.4 22 79-100 5-26 (131)
53 TIGR02115 potass_kdpF K+-trans 25.4 18 0.00038 16.9 -0.4 7 52-58 19-25 (26)
54 PF01629 DUF22: Domain of unkn 24.5 85 0.0018 20.2 2.4 25 22-46 60-84 (112)
55 PHA03162 hypothetical protein; 23.2 54 0.0012 21.7 1.3 24 75-98 2-25 (135)
56 cd04517 TLF TBP-like factors ( 22.9 77 0.0017 21.9 2.2 34 50-84 30-63 (174)
57 cd00250 CAS_like Clavaminic ac 21.7 1.1E+02 0.0024 22.2 3.0 34 23-58 221-254 (262)
58 KOG2376 Signal recognition par 20.5 65 0.0014 27.0 1.6 19 41-59 570-588 (652)
No 1
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.5e-37 Score=238.40 Aligned_cols=135 Identities=30% Similarity=0.550 Sum_probs=119.6
Q ss_pred CcccCCCCCcceeEecCCeEEc-cEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCCccCCcceeeeccCCCC
Q 042720 1 MRLHPPVTLLVPRLARENCKVA-GYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEIDVVGHNFELLPFGAGRR 79 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~-g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r 79 (146)
||+||+++. +.|.+++|+++. ++.|+||+.|.++.+++||||++||||++|+||||.+++.. ..++..|+|||.|||
T Consensus 364 LR~yP~~~~-~~R~C~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~~~~~-~~~~~~ylPFG~GPR 441 (499)
T KOG0158|consen 364 LRLYPPAPF-LNRECTKDYEIPGGFVIPKGTPVMIPTYALHHDPEYWPEPEKFKPERFEEENNK-SRHPGAYLPFGVGPR 441 (499)
T ss_pred HhhCCCccc-ccceecCceecCCCeEeCCCCEEEeecccccCCcccCCCcccCCCccCCCCccc-ccCCccccCCCCCcc
Confidence 799999999 789999999999 99999999999999999999999999999999999987654 456779999999999
Q ss_pred CCccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeCC
Q 042720 80 MCVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPRL 139 (146)
Q Consensus 80 ~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 139 (146)
+|+|++||++|+|++|++||++|+++..+.. ... ......+.++.|++++++++++|.
T Consensus 442 ~CIGmRfa~mq~K~~L~~lL~~f~~~~~~~t-~~~-~~~~~~~~~l~pk~gi~Lkl~~r~ 499 (499)
T KOG0158|consen 442 NCIGMRFALMEAKLALAHLLRNFSFEVCPTT-IIP-LEGDPKGFTLSPKGGIWLKLEPRD 499 (499)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhCEEecCCcc-cCc-ccCCccceeeecCCceEEEEEeCC
Confidence 9999999999999999999999999998732 222 222233778899999999999984
No 2
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-35 Score=234.56 Aligned_cols=134 Identities=37% Similarity=0.669 Sum_probs=120.0
Q ss_pred CcccCCCCCcceeEecCCeEEc-cEEeCCCCEEEeehhhhccCCCCCC-CCCCcCCCCCCCCCCCccCCcceeeeccCCC
Q 042720 1 MRLHPPVTLLVPRLARENCKVA-GYDIIKNSRVIVNVWAIGRDPTLWE-KPNEFCPERFIGKEIDVVGHNFELLPFGAGR 78 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~-g~~ip~g~~v~~~~~~~~~d~~~~~-~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~ 78 (146)
|||||++|+ +.|.+.+|++++ |+.||||+.|+++++++|||+.+|+ ||++|+||||+++......++++|+|||+|+
T Consensus 362 LRLyppvp~-~~R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~~~~~fipFsaGp 440 (497)
T KOG0157|consen 362 LRLYPPVPL-VARKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKRHPFAFIPFSAGP 440 (497)
T ss_pred hccCCCCch-hhcccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCCCCCccccCCCCCc
Confidence 799999998 679999999995 8999999999999999999999996 9999999999975443345678999999999
Q ss_pred CCCccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeCCC
Q 042720 79 RMCVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPRLP 140 (146)
Q Consensus 79 r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~ 140 (146)
|.|+|++||++|+|++++.|+++|++++..+. . ......+++.++++++|++++|..
T Consensus 441 R~CiG~~fA~lemKv~l~~ll~~f~~~~~~~~---~--~~~~~~~~l~~~~gl~v~~~~r~~ 497 (497)
T KOG0157|consen 441 RNCIGQKFAMLEMKVVLAHLLRRFRIEPVGGD---K--PKPVPELTLRPKNGLKVKLRPRGS 497 (497)
T ss_pred ccchhHHHHHHHHHHHHHHHHHheEEEecCCC---C--ceeeeEEEEEecCCeEEEEEeCCC
Confidence 99999999999999999999999999988762 1 445678889999999999999963
No 3
>PLN02183 ferulate 5-hydroxylase
Probab=100.00 E-value=8.1e-35 Score=230.63 Aligned_cols=140 Identities=46% Similarity=0.903 Sum_probs=116.4
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCCc-cCCcceeeeccCCCC
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEIDV-VGHNFELLPFGAGRR 79 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~-~~~~~~~~~Fg~G~r 79 (146)
|||+|+++.. .|.+.+|++++|+.|||||.|.++.+++|+|+++|+||++|+||||++++... ......++|||.|+|
T Consensus 374 lRl~p~~p~~-~r~~~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R 452 (516)
T PLN02183 374 LRLHPPIPLL-LHETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRR 452 (516)
T ss_pred hccCCCccce-eeeccCceeECCEEECCCCEEEEehhhhcCCccccCCccccCchhhCCCCCccccCCcceecCCCCCCC
Confidence 7999999984 59999999999999999999999999999999999999999999999754321 224568999999999
Q ss_pred CCccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeCCCC
Q 042720 80 MCVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPRLPL 141 (146)
Q Consensus 80 ~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~ 141 (146)
+|+|++||++|+++++|.|+++|++++.++...........++.+.....++.+.+++|..+
T Consensus 453 ~CiG~~lA~~e~~l~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 514 (516)
T PLN02183 453 SCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSELDMNDVFGLTAPRATRLVAVPTYRLQC 514 (516)
T ss_pred CCCChHHHHHHHHHHHHHHHheeEEEcCCCCCCCCCChhhccccccccCCCcEEEeecCCCC
Confidence 99999999999999999999999999877632223443334455555566888999988544
No 4
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00 E-value=7.5e-35 Score=230.33 Aligned_cols=142 Identities=46% Similarity=0.981 Sum_probs=122.3
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCCccC---CcceeeeccCC
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEIDVVG---HNFELLPFGAG 77 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~---~~~~~~~Fg~G 77 (146)
||++|+++..++|.+.+|++++|+.||||+.|.++.+++|+|+++|+||++|+||||++++..... ....++|||.|
T Consensus 359 lRl~p~~~~~~~R~~~~d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G 438 (504)
T PLN00110 359 FRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAG 438 (504)
T ss_pred hcCCCCcccccccccCCCeeeCCEEECCCCEEEEeHHHhcCChhhcCCcccCCcccccCCCCcccccCCCeeeEeCCCCC
Confidence 799999998778999999999999999999999999999999999999999999999965322111 23579999999
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeCCCCCCCC
Q 042720 78 RRMCVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPRLPLDLYS 145 (146)
Q Consensus 78 ~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~~~~~ 145 (146)
+|.|+|++||.+|++++++.|+++|++++.++. +........+++.+..++.+++++|.+..-|+
T Consensus 439 ~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 503 (504)
T PLN00110 439 RRICAGTRMGIVLVEYILGTLVHSFDWKLPDGV---ELNMDEAFGLALQKAVPLSAMVTPRLHQSAYA 503 (504)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhceeecCCCC---ccCcccccccccccCCCceEeeccCCCchhcc
Confidence 999999999999999999999999999987652 33333345677788889999999998877776
No 5
>PLN02971 tryptophan N-hydroxylase
Probab=100.00 E-value=6.4e-35 Score=232.49 Aligned_cols=141 Identities=35% Similarity=0.685 Sum_probs=120.6
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCCc--cCCcceeeeccCCC
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEIDV--VGHNFELLPFGAGR 78 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~--~~~~~~~~~Fg~G~ 78 (146)
||++|+++..++|.+.+|++++||.||||+.|+++.|++|+||++|+||++|+||||++++.+. ...+..++|||.|+
T Consensus 397 lRl~p~~~~~~~r~~~~d~~~~G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~ 476 (543)
T PLN02971 397 FRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGK 476 (543)
T ss_pred HhcCCCcccCcceecCCCeeECCEEECCCCEEEECcHHhcCChhhCCCccccCcccCCCCCccccccCCCCccCCCCCCC
Confidence 7999999987789999999999999999999999999999999999999999999999754321 22456899999999
Q ss_pred CCCccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeCCCCCCC
Q 042720 79 RMCVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPRLPLDLY 144 (146)
Q Consensus 79 r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~~~~ 144 (146)
|.|+|++||++|++++++.|+++|++++.++. ...++...++ ++...+++.+.+++|.++..|
T Consensus 477 R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 539 (543)
T PLN02971 477 RGCAAPALGTAITTMMLARLLQGFKWKLAGSE--TRVELMESSH-DMFLSKPLVMVGELRLSEDLY 539 (543)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCEEEeCCCC--CCcchhhhcC-cccccccceeeeeecCCcccc
Confidence 99999999999999999999999999987653 2355555555 553455899999999887776
No 6
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00 E-value=7.7e-35 Score=229.76 Aligned_cols=138 Identities=41% Similarity=0.839 Sum_probs=119.9
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCC-CCCCCcCCCCCCCCCCC--ccCCcceeeeccCC
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLW-EKPNEFCPERFIGKEID--VVGHNFELLPFGAG 77 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~P~R~~~~~~~--~~~~~~~~~~Fg~G 77 (146)
||++|+++..+.|.+.+|++++|+.|||||.|.++.+.+|+||++| +||++|+||||+++... ....+..++|||.|
T Consensus 358 lRl~p~~~~~~~R~~~~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G 437 (499)
T PLN03234 358 LRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSG 437 (499)
T ss_pred hccCCCccccCCcccCCCeeECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCC
Confidence 7999999986679999999999999999999999999999999999 89999999999975432 12345689999999
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeC
Q 042720 78 RRMCVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPR 138 (146)
Q Consensus 78 ~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 138 (146)
+|.|+|+++|++|++++++.|+++|+++++++..+..+.....+++...+++.+.+.+++|
T Consensus 438 ~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (499)
T PLN03234 438 RRMCPAMHLGIAMVEIPFANLLYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAPTKH 498 (499)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHheeeeCCCCCCCCCCCcccccccccccCCCeEEEeecC
Confidence 9999999999999999999999999999987644445555566777778888888888876
No 7
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00 E-value=2.3e-34 Score=227.85 Aligned_cols=145 Identities=38% Similarity=0.752 Sum_probs=123.5
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCC--c--cCCcceeeeccC
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEID--V--VGHNFELLPFGA 76 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~--~--~~~~~~~~~Fg~ 76 (146)
||++|+++..++|.+.+|++++|+.|||||.|.++.+++|+||++|+||++|+||||..+... . ......++|||.
T Consensus 366 lRl~p~~~~~~~R~~~~d~~i~g~~IPkGt~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~ 445 (514)
T PLN03112 366 FRMHPAGPFLIPHESLRATTINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSA 445 (514)
T ss_pred hccCCCcccccccccCCCeeEcCEEeCCCCEEEEehHHhhCCcccCCChhhcCCcccCCCCCCccccccCCCcceeCCCC
Confidence 799999998678999999999999999999999999999999999999999999998653211 1 123457999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeCCCCCCCC
Q 042720 77 GRRMCVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPRLPLDLYS 145 (146)
Q Consensus 77 G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~~~~~ 145 (146)
|+|.|+|++||.+|++++++.|+++|++++.++....+......+.+++++.+++++.+.+|...++|+
T Consensus 446 G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 514 (514)
T PLN03112 446 GKRKCPGAPLGVTMVLMALARLFHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLRAVATPRLAPHLYG 514 (514)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHheeeecCCCCCcccCCCccccCcccccCCCeEEEeecCCcccccC
Confidence 999999999999999999999999999998765333344444445677777889999999999999985
No 8
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00 E-value=2.1e-34 Score=228.31 Aligned_cols=145 Identities=47% Similarity=0.927 Sum_probs=122.0
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCC----ccCCcceeeeccC
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEID----VVGHNFELLPFGA 76 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~----~~~~~~~~~~Fg~ 76 (146)
||++|+++..++|.+.+|++++|+.||+|+.|.++.+++|+||++|+||++|+||||++++.. ....+..++|||.
T Consensus 367 lRl~p~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~ 446 (517)
T PLN02687 367 FRLHPSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGA 446 (517)
T ss_pred HccCCCccccccccCCCCeeECCEEECCCCEEEEecHHhcCCcccCCCcccCCchhcCCCCCccccccCCCceeeCCCCC
Confidence 799999998778999999999999999999999999999999999999999999999975321 1123557999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeCCCCCCCC
Q 042720 77 GRRMCVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPRLPLDLYS 145 (146)
Q Consensus 77 G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~~~~~ 145 (146)
|+|.|+|++||.+|++++++.|+++|++++.++....+........+++.+..++.+++++|.--++|+
T Consensus 447 G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~ 515 (517)
T PLN02687 447 GRRICAGLSWGLRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLTLQRAVPLMVHPRPRLLPSAYG 515 (517)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHhcceecCCCCCcccCCcccccceeeecCCCeEEeeccCCChhhcc
Confidence 999999999999999999999999999999866332334333445566677789999999997446664
No 9
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=100.00 E-value=2.8e-34 Score=226.87 Aligned_cols=132 Identities=22% Similarity=0.474 Sum_probs=111.5
Q ss_pred CcccCCCCCcceeEecCCeE-EccEEeCCCCEEEeehhhhccCCCCC-CCCCCcCCCCCCCCCCCcc-CCcceeeeccCC
Q 042720 1 MRLHPPVTLLVPRLARENCK-VAGYDIIKNSRVIVNVWAIGRDPTLW-EKPNEFCPERFIGKEIDVV-GHNFELLPFGAG 77 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~-l~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~P~R~~~~~~~~~-~~~~~~~~Fg~G 77 (146)
|||||++|... |.+.+|.+ ++|+.||||+.|.++.|++||||++| +||++|+||||++++.... ..+..|+|||+|
T Consensus 365 LRl~P~vp~~~-r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~G 443 (500)
T PLN02169 365 MRLYPPLPFNH-KAPAKPDVLPSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSG 443 (500)
T ss_pred HhcCCCCCcCc-eecCCCCCccCCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCccccCCCCC
Confidence 79999999854 66666555 59999999999999999999999999 8999999999997543322 236789999999
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeC
Q 042720 78 RRMCVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPR 138 (146)
Q Consensus 78 ~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 138 (146)
+|.|+|++||++|++++++.|+++|++++.++. +. .....+++.+++++.+++++|
T Consensus 444 pR~CiG~~~A~~e~k~~la~ll~~f~~~~~~~~---~~--~~~~~~~l~~~~gl~l~l~~~ 499 (500)
T PLN02169 444 PRTCLGKHLALLQMKIVALEIIKNYDFKVIEGH---KI--EAIPSILLRMKHGLKVTVTKK 499 (500)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHCEEEEcCCC---Cc--ccccceEEecCCCEEEEEEeC
Confidence 999999999999999999999999999987542 22 223457788999999999987
No 10
>PLN02966 cytochrome P450 83A1
Probab=100.00 E-value=3.1e-34 Score=226.66 Aligned_cols=137 Identities=42% Similarity=0.857 Sum_probs=113.2
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCC-CCCCCcCCCCCCCCCCCccCCcceeeeccCCCC
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLW-EKPNEFCPERFIGKEIDVVGHNFELLPFGAGRR 79 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r 79 (146)
||++|+++..+.|.+.+|++++|+.|||||.|.++.+++||||++| +||++|+||||++++......+..++|||.|+|
T Consensus 361 LRl~p~v~~~~~R~~~~d~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R 440 (502)
T PLN02966 361 LRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRR 440 (502)
T ss_pred hccCCCcccccCcccCCCeeEccEEECCCCEEEEecccccCCcccccCChhhCChhhhcCCCCCcCCCcCCccCCCCCCC
Confidence 7999999986789999999999999999999999999999999999 999999999999754332234568999999999
Q ss_pred CCccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEee
Q 042720 80 MCVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKP 137 (146)
Q Consensus 80 ~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 137 (146)
.|+|++||.+|++++++.|+++|+|++.++...+.+..+...++...+...+.+..++
T Consensus 441 ~C~G~~~A~~el~~~la~ll~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (502)
T PLN02966 441 MCPGMRLGAAMLEVPYANLLLNFNFKLPNGMKPDDINMDVMTGLAMHKSQHLKLVPEK 498 (502)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhceeeCCCCCCcccCCcccccCeeeccCCCeEEEEEe
Confidence 9999999999999999999999999998764444444445555555344455544443
No 11
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00 E-value=4.6e-34 Score=225.52 Aligned_cols=137 Identities=39% Similarity=0.745 Sum_probs=115.1
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCC--ccCCcceeeeccCCC
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEID--VVGHNFELLPFGAGR 78 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~--~~~~~~~~~~Fg~G~ 78 (146)
||++|+++...+|.+.+|++++|+.||+||.|.++.+++|+||++|+||++|+||||++++.. .......++|||.|+
T Consensus 363 lRl~p~~~~~~~r~~~~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~ 442 (503)
T PLN02394 363 LRLHMAIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGR 442 (503)
T ss_pred HhcCCCcccccceecCCCcccCCEEeCCCCEEEEchHHHhCCcccCCCccccCccccCCCCCcccccCCCCceeCCCCCC
Confidence 799999999778999999999999999999999999999999999999999999999975432 122356799999999
Q ss_pred CCCccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCccccee-eEecCCCCeEEEEeeCC
Q 042720 79 RMCVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFG-VTTSRKNPLLVVPKPRL 139 (146)
Q Consensus 79 r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~r~ 139 (146)
|+|+|++||++|++++++.|+++|++++.++. .+++....++ +.+..+.++.+++.+|.
T Consensus 443 R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 502 (503)
T PLN02394 443 RSCPGIILALPILGIVLGRLVQNFELLPPPGQ--SKIDVSEKGGQFSLHIAKHSTVVFKPRS 502 (503)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHceeEeCCCC--CcCccccccCceeeccCCCceEEeecCC
Confidence 99999999999999999999999999987653 1234333342 45545558999999996
No 12
>PTZ00404 cytochrome P450; Provisional
Probab=100.00 E-value=4.6e-34 Score=224.53 Aligned_cols=129 Identities=26% Similarity=0.538 Sum_probs=111.2
Q ss_pred CcccCCCCCcceeEecCCeEE-ccEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCCccCCcceeeeccCCCC
Q 042720 1 MRLHPPVTLLVPRLARENCKV-AGYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEIDVVGHNFELLPFGAGRR 79 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l-~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r 79 (146)
|||||+++..++|.+.+|+++ +|+.||||+.|.++.+++|+||++|+||++|+||||++.. ....++|||.|+|
T Consensus 353 lRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~~-----~~~~~~pFg~G~R 427 (482)
T PTZ00404 353 LRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPD-----SNDAFMPFSIGPR 427 (482)
T ss_pred HHhcCCcccccceeccCCEEecCCeEECCCCEEEeeHHHhhCCccccCCccccCccccCCCC-----CCCceeccCCCCC
Confidence 699999997678999999999 9999999999999999999999999999999999998642 3458999999999
Q ss_pred CCccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeC
Q 042720 80 MCVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPR 138 (146)
Q Consensus 80 ~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 138 (146)
.|+|++||++|++++++.|+++|++++.++. +........+++. ..++++.+++|
T Consensus 428 ~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~-~~~~~v~~~~R 482 (482)
T PTZ00404 428 NCVGQQFAQDELYLAFSNIILNFKLKSIDGK---KIDETEEYGLTLK-PNKFKVLLEKR 482 (482)
T ss_pred CCccHHHHHHHHHHHHHHHHHhcEEecCCCC---CCCcccccceeec-CCCceeeeecC
Confidence 9999999999999999999999999987552 2222223456666 45789998876
No 13
>PLN00168 Cytochrome P450; Provisional
Probab=100.00 E-value=4.4e-34 Score=226.58 Aligned_cols=137 Identities=35% Similarity=0.657 Sum_probs=115.4
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCC-----ccCCcceeeecc
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEID-----VVGHNFELLPFG 75 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~-----~~~~~~~~~~Fg 75 (146)
||+||+++..++|.+.+|++++|+.||||+.|.++.+++|+||++|+||++|+||||++.+.. ....+..++|||
T Consensus 377 lRl~p~~~~~~~R~~~~d~~~~g~~IpkGt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG 456 (519)
T PLN00168 377 LRKHPPAHFVLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFG 456 (519)
T ss_pred hhcCCCCcccCCccCCCCccCCCEEECCCCEEEEChHHHhcCccccCCccccCcccCCCCCCCccccccccCCcceeCCC
Confidence 799999998778999999999999999999999999999999999999999999999974221 112345799999
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeCCC
Q 042720 76 AGRRMCVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPRLP 140 (146)
Q Consensus 76 ~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~ 140 (146)
.|+|.|+|++||.+|++++++.|+++|+|++.++. +.+......+++.+.+++.+++++|+.
T Consensus 457 ~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~R~~ 518 (519)
T PLN00168 457 VGRRICAGLGIAMLHLEYFVANMVREFEWKEVPGD---EVDFAEKREFTTVMAKPLRARLVPRRT 518 (519)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHccceeCCCC---cCChhhhceeEEeecCCcEEEEEeccC
Confidence 99999999999999999999999999999997652 233322334556667789999999864
No 14
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.3e-34 Score=223.25 Aligned_cols=133 Identities=53% Similarity=1.004 Sum_probs=116.3
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCCccCCcceeeeccCCCCC
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEIDVVGHNFELLPFGAGRRM 80 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~ 80 (146)
+|++|++|+.++|.+++|++++||.|||||.|+++.|++|+||++|+||++|+||||++++ +.......++|||.|+|.
T Consensus 356 ~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~-d~~~~~~~~iPFG~GRR~ 434 (489)
T KOG0156|consen 356 LRLHPPLPLLLPRETTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSN-DGKGLDFKLIPFGSGRRI 434 (489)
T ss_pred HhcCCCccccccccccCCeeEcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCc-cccCCceEecCCCCCcCC
Confidence 6999999999999999999999999999999999999999999999999999999999874 222256789999999999
Q ss_pred CccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeCC
Q 042720 81 CVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPRL 139 (146)
Q Consensus 81 C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 139 (146)
|||..+|.+++.++++.|+++|+|+.+.+ .+++.... +++..+.++.+...+|.
T Consensus 435 CpG~~La~~~l~l~la~llq~F~w~~~~~----~~d~~e~~-~~~~~~~pl~~~~~~r~ 488 (489)
T KOG0156|consen 435 CPGEGLARAELFLFLANLLQRFDWKLPGG----KVDMEEAG-LTLKKKKPLKAVPVPRL 488 (489)
T ss_pred CCcHHHHHHHHHHHHHHHHheeeeecCCC----CCCCcccc-cceecCCcceeeeecCC
Confidence 99999999999999999999999999876 34444443 66666667777777664
No 15
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=100.00 E-value=3.5e-34 Score=220.36 Aligned_cols=109 Identities=41% Similarity=0.760 Sum_probs=98.2
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCCccCCcceeeeccCCCCC
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEIDVVGHNFELLPFGAGRRM 80 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~ 80 (146)
||++|+++..++|.+.+|++++|+.||||+.|.++.+++|+|+++|+||++|+||||++.+.........++|||.|+|.
T Consensus 332 lRl~p~~~~~~~R~~~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~ 411 (463)
T PF00067_consen 332 LRLYPPVPFSLPRVATEDVTLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERGISNRPSFAFLPFGAGPRM 411 (463)
T ss_dssp HHHSTSSSTEEEEEESSSEEETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTSTBCSSSTTSSTTESSTTS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 69999999668899999999999999999999999999999999999999999999998765333456789999999999
Q ss_pred CccHHHHHHHHHHHHHHHHhhceEEccCC
Q 042720 81 CVGYALGLITVQSTLANLLHGFEWKLPGN 109 (146)
Q Consensus 81 C~G~~~a~~~~~~~l~~ll~~f~~~~~~~ 109 (146)
|+|+++|++|++++++.|+++|++++.++
T Consensus 412 C~G~~~A~~~~~~~la~ll~~f~~~~~~~ 440 (463)
T PF00067_consen 412 CPGRNLAMMEMKVFLAKLLRRFDFELVPG 440 (463)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHEEEEESTT
T ss_pred chHHHHHHHHHHHHHHHHHHhCEEEECCC
Confidence 99999999999999999999999999765
No 16
>PLN02655 ent-kaurene oxidase
Probab=100.00 E-value=2.1e-33 Score=220.11 Aligned_cols=135 Identities=33% Similarity=0.683 Sum_probs=117.1
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCCccCCcceeeeccCCCCC
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEIDVVGHNFELLPFGAGRRM 80 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~ 80 (146)
||++|+++...+|.+.+|++++|+.||||+.|+++.+++|+|+++|+||++|+||||++++... .....++|||.|+|.
T Consensus 331 lRl~p~~~~~~~r~~~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~~-~~~~~~~~Fg~G~r~ 409 (466)
T PLN02655 331 LRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYES-ADMYKTMAFGAGKRV 409 (466)
T ss_pred hccCCCcCCCCCcccCCCcccCCEEECCCCEEEecHHHhcCCcccCCChhccCccccCCCCccc-CCcccccCCCCCCCC
Confidence 7999999986679999999999999999999999999999999999999999999999754321 234689999999999
Q ss_pred CccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeCCC
Q 042720 81 CVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPRLP 140 (146)
Q Consensus 81 C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~ 140 (146)
|+|++||.+|++++++.|+++|++++.++.. ......++++.+++++.+++++|.+
T Consensus 410 C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~r~~ 465 (466)
T PLN02655 410 CAGSLQAMLIACMAIARLVQEFEWRLREGDE----EKEDTVQLTTQKLHPLHAHLKPRGS 465 (466)
T ss_pred CCcHHHHHHHHHHHHHHHHHHeEEEeCCCCc----cccchhheeEeecCCcEEEEeecCC
Confidence 9999999999999999999999999976521 1123456777788899999999875
No 17
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00 E-value=2.5e-33 Score=222.04 Aligned_cols=131 Identities=34% Similarity=0.584 Sum_probs=114.3
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCC-CCCCCcCCCCCCCCCCCccCCcceeeeccCCCC
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLW-EKPNEFCPERFIGKEIDVVGHNFELLPFGAGRR 79 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r 79 (146)
||++|+++. ++|.+.+|++++|+.|||||.|.++.+++|+||++| +||++|+||||++.+. .....++|||.|+|
T Consensus 385 lRl~p~~~~-~~R~~~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~~---~~~~~~~pFG~G~R 460 (516)
T PLN02290 385 LRLYPPATL-LPRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPF---APGRHFIPFAAGPR 460 (516)
T ss_pred HHcCCCccc-cceeecCCeeECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCCCC---CCCCeEecCCCCCC
Confidence 699999986 789999999999999999999999999999999999 8999999999995321 12347999999999
Q ss_pred CCccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeCCC
Q 042720 80 MCVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPRLP 140 (146)
Q Consensus 80 ~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~ 140 (146)
.|+|+++|++|++++++.|+++|++++.++. . ......+++.|++++.+++++|++
T Consensus 461 ~C~G~~lA~~el~l~la~ll~~f~~~~~~~~---~--~~~~~~~~~~p~~~~~~~~~~~~~ 516 (516)
T PLN02290 461 NCIGQAFAMMEAKIILAMLISKFSFTISDNY---R--HAPVVVLTIKPKYGVQVCLKPLNP 516 (516)
T ss_pred CCccHHHHHHHHHHHHHHHHHhceEeeCCCc---c--cCccceeeecCCCCCeEEEEeCCC
Confidence 9999999999999999999999999987652 1 112235778899999999999975
No 18
>PLN02738 carotene beta-ring hydroxylase
Probab=100.00 E-value=3.7e-33 Score=225.35 Aligned_cols=137 Identities=27% Similarity=0.496 Sum_probs=115.8
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCC--CccCCcceeeeccCCC
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEI--DVVGHNFELLPFGAGR 78 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~--~~~~~~~~~~~Fg~G~ 78 (146)
|||||+++. +.|.+.+|++++|+.||+||.|.++.+.+|+||++|+||++|+||||+.+.. ........++|||.|+
T Consensus 460 LRL~p~~p~-~~R~a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~ 538 (633)
T PLN02738 460 LRLYPQPPV-LIRRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGP 538 (633)
T ss_pred HhcCCCccc-cceeeccCceECCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCceeCCCCCC
Confidence 799999998 5588999999999999999999999999999999999999999999985321 1223456899999999
Q ss_pred CCCccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeCCCCC
Q 042720 79 RMCVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPRLPLD 142 (146)
Q Consensus 79 r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~~ 142 (146)
|.|+|++||++|++++++.|+++|+|++..+. .+.. .....++.+.+++++++++|.+..
T Consensus 539 R~CiG~~lA~~El~l~LA~Llr~F~~el~~~~--~~~~--~~~~~~~~p~~~l~v~l~~R~~~~ 598 (633)
T PLN02738 539 RKCVGDMFASFENVVATAMLVRRFDFQLAPGA--PPVK--MTTGATIHTTEGLKMTVTRRTKPP 598 (633)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHhCeeEeCCCC--CCcc--cccceEEeeCCCcEEEEEECCCCC
Confidence 99999999999999999999999999997662 1222 223466778889999999997643
No 19
>PLN02500 cytochrome P450 90B1
Probab=100.00 E-value=3.4e-33 Score=220.09 Aligned_cols=129 Identities=24% Similarity=0.443 Sum_probs=107.5
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCCcc------CCcceeeec
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEIDVV------GHNFELLPF 74 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~------~~~~~~~~F 74 (146)
||+||+++. +.|.+++|++++||.|||||.|+++.+++||||++|+||++|+||||++++.... ..+..++||
T Consensus 354 lRl~P~~~~-~~R~~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpF 432 (490)
T PLN02500 354 LRLGNVVRF-LHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPF 432 (490)
T ss_pred HhcCCCccC-eeeEeCCCceeCCEEECCCCEEEechhhcccCcccCCCccccChhhccCCCcccccccccCCCCCCCcCC
Confidence 699999998 5799999999999999999999999999999999999999999999997542211 235679999
Q ss_pred cCCCCCCccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEee
Q 042720 75 GAGRRMCVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKP 137 (146)
Q Consensus 75 g~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 137 (146)
|.|+|.|+|+++|.+|++++++.|+++|++++.++.. . .. ...+ .+..++.+++++
T Consensus 433 G~G~R~CiG~~~A~~el~~~la~ll~~f~~~~~~~~~--~--~~--~~~~-~~~~~l~~~~~~ 488 (490)
T PLN02500 433 GGGPRLCAGSELAKLEMAVFIHHLVLNFNWELAEADQ--A--FA--FPFV-DFPKGLPIRVRR 488 (490)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHhccEEEEcCCCc--c--ee--cccc-cCCCCceEEEEe
Confidence 9999999999999999999999999999999876521 1 11 1122 334588888765
No 20
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=100.00 E-value=4.3e-33 Score=220.26 Aligned_cols=135 Identities=28% Similarity=0.478 Sum_probs=113.6
Q ss_pred CcccCCCCCcceeEecCCeEE-ccEEeCCCCEEEeehhhhccCCCCC-CCCCCcCCCCCCCCCCCccCCcceeeeccCCC
Q 042720 1 MRLHPPVTLLVPRLARENCKV-AGYDIIKNSRVIVNVWAIGRDPTLW-EKPNEFCPERFIGKEIDVVGHNFELLPFGAGR 78 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l-~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~ 78 (146)
||++|+++.. .|.+.+|.++ +|+.||+||.|.++.+++|||+++| +||++|+||||++++......+..++|||+|+
T Consensus 364 LRl~p~v~~~-~r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~~pFg~G~ 442 (502)
T PLN02426 364 MRLFPPVQFD-SKFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFKYPVFQAGL 442 (502)
T ss_pred HhCCCCCCCc-ceeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCCcCCCCCcccCCCCCCC
Confidence 7999999985 5888888777 8999999999999999999999999 99999999999974321123456799999999
Q ss_pred CCCccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeCC
Q 042720 79 RMCVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPRL 139 (146)
Q Consensus 79 r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 139 (146)
|.|+|+++|.+|++++++.|+++|++++..+.. + .......+++.+++++++++++|.
T Consensus 443 R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~--~-~~~~~~~~~~~~~~gl~v~~~~r~ 500 (502)
T PLN02426 443 RVCLGKEMALMEMKSVAVAVVRRFDIEVVGRSN--R-APRFAPGLTATVRGGLPVRVRERV 500 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHceEEEecCCC--C-CCcccceeEEecCCCEEEEEEEcc
Confidence 999999999999999999999999999864411 1 112233577888999999999985
No 21
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=100.00 E-value=3.6e-33 Score=221.14 Aligned_cols=133 Identities=26% Similarity=0.357 Sum_probs=110.1
Q ss_pred CcccCCCCCcceeEecCCeEE-ccEEeCCCCEEEeehhhhccCCCCC-CCCCCcCCCCCCCCCCCccCCcceeeeccCCC
Q 042720 1 MRLHPPVTLLVPRLARENCKV-AGYDIIKNSRVIVNVWAIGRDPTLW-EKPNEFCPERFIGKEIDVVGHNFELLPFGAGR 78 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l-~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~ 78 (146)
||++|+++.. .|.+.+|.++ +|+.||||+.|.++.+++|+||++| +||++|+||||++++......+..++|||.|+
T Consensus 382 LRl~p~~p~~-~r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~ 460 (516)
T PLN03195 382 LRLYPAVPQD-PKGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGP 460 (516)
T ss_pred hhcCCCCcch-hhhhccCcCcCCCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCCCCCcCCCCCceEeccCCCC
Confidence 7999999985 4656666555 9999999999999999999999999 99999999999964321223456799999999
Q ss_pred CCCccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeCC
Q 042720 79 RMCVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPRL 139 (146)
Q Consensus 79 r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 139 (146)
|.|+|++||++|++++++.|+++|++++.++. +. ......++.++.++++++++|.
T Consensus 461 R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~~---~~--~~~~~~~~~~~~~~~v~~~~r~ 516 (516)
T PLN03195 461 RICLGKDSAYLQMKMALALLCRFFKFQLVPGH---PV--KYRMMTILSMANGLKVTVSRRS 516 (516)
T ss_pred CcCcCHHHHHHHHHHHHHHHHHhceeEecCCC---cc--eeeeeeEEecCCCEEEEEEeCC
Confidence 99999999999999999999999999987542 22 2233455678889999999874
No 22
>PLN03018 homomethionine N-hydroxylase
Probab=100.00 E-value=1.1e-32 Score=219.36 Aligned_cols=138 Identities=34% Similarity=0.630 Sum_probs=114.4
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCCc-----cCCcceeeecc
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEIDV-----VGHNFELLPFG 75 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~-----~~~~~~~~~Fg 75 (146)
||++|+++....|.+.+|++++|+.||||+.|.++.+++|+||++|+||++|+||||++++... ...+..++|||
T Consensus 384 lRl~p~~~~~~~r~~~~d~~i~G~~IpkGt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG 463 (534)
T PLN03018 384 FRIHPSAHYVPPHVARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFS 463 (534)
T ss_pred HhcCCCccccCCcccCCCeeECCEEECCCCEEEEChHHhcCCcccCCCccccCCccCCCCCCccccccccCCCCCccCCC
Confidence 7999999986679999999999999999999999999999999999999999999999654221 12346799999
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeCCCC
Q 042720 76 AGRRMCVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPRLPL 141 (146)
Q Consensus 76 ~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~ 141 (146)
.|+|.|+|++||.+|++++++.|+++|++++.++. .+.+.....+.+.. +.++++.+++|...
T Consensus 464 ~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~--~~~~~~~~~~~~~~-p~~~~v~~~~R~~~ 526 (534)
T PLN03018 464 TGRRGCVGVKVGTIMMVMMLARFLQGFNWKLHQDF--GPLSLEEDDASLLM-AKPLLLSVEPRLAP 526 (534)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHhceEEeCCCC--CCCCccccccceec-CCCeEEEEEecccc
Confidence 99999999999999999999999999999987652 12333223344444 46899999999543
No 23
>PLN02774 brassinosteroid-6-oxidase
Probab=100.00 E-value=9.6e-33 Score=216.29 Aligned_cols=126 Identities=29% Similarity=0.492 Sum_probs=107.1
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCCccCCcceeeeccCCCCC
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEIDVVGHNFELLPFGAGRRM 80 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~ 80 (146)
||++|+++. +.|.+++|++++|+.||||+.|+++.+.+|+||++|+||++|+||||++++.. .. ..++|||+|+|.
T Consensus 337 lRl~P~v~~-~~R~~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~~--~~-~~~lpFG~G~r~ 412 (463)
T PLN02774 337 SRLATIVNG-VLRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSLE--SH-NYFFLFGGGTRL 412 (463)
T ss_pred HhcCCCCCC-cccccCCCeeECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCCcC--CC-ccccCcCCCCCc
Confidence 799999986 56999999999999999999999999999999999999999999999965421 12 368999999999
Q ss_pred CccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEee
Q 042720 81 CVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKP 137 (146)
Q Consensus 81 C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 137 (146)
|+|+++|.+|++++++.|+++|++++.++. +. . ...++.|++++.+++++
T Consensus 413 C~G~~~A~~e~~~~la~Ll~~f~~~~~~~~---~~-~---~~~~~~p~~g~~~~~~~ 462 (463)
T PLN02774 413 CPGKELGIVEISTFLHYFVTRYRWEEVGGD---KL-M---KFPRVEAPNGLHIRVSP 462 (463)
T ss_pred CCcHHHHHHHHHHHHHHHHHhceEEECCCC---cc-c---cCCCCCCCCCceEEeee
Confidence 999999999999999999999999997652 11 1 11233477889988873
No 24
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.6e-33 Score=213.41 Aligned_cols=132 Identities=30% Similarity=0.541 Sum_probs=119.7
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCCccCCcceeeeccCCCCC
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEIDVVGHNFELLPFGAGRRM 80 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~ 80 (146)
|||||.+++ ..|+..+|.+|+||.|||||.|.+..+.+.+||.+|++|++|+|||||+.+. ...+++.++|||.|+|+
T Consensus 387 lRlyPv~~~-~~R~l~~D~vL~gY~vPagT~V~l~~~~~~r~~~~F~~p~~F~PeRWL~~~~-~~~~pF~~LPFGfG~R~ 464 (519)
T KOG0159|consen 387 LRLYPVVPG-NGRVLPKDLVLSGYHVPAGTLVVLFLYVLGRNPAYFPDPEEFLPERWLKPST-KTIHPFASLPFGFGPRM 464 (519)
T ss_pred hceeccccc-cccccchhceeccceecCCCeEEEeehhhccChhhCCCccccChhhhccccc-CCCCCceecCCCCCccc
Confidence 799999998 5699999999999999999999999999999999999999999999998763 45678999999999999
Q ss_pred CccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeCC
Q 042720 81 CVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPRL 139 (146)
Q Consensus 81 C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 139 (146)
|+||++|++|+.++|++|+++|+++...+ .+ +...+.+++.|..++.+++++|.
T Consensus 465 C~GRRiAElEl~llLarllr~f~V~~~~~---~p--v~~~~~~il~P~~~l~f~f~~r~ 518 (519)
T KOG0159|consen 465 CLGRRIAELELHLLLARLLRNFKVEFLHE---EP--VEYVYRFILVPNRPLRFKFRPRN 518 (519)
T ss_pred cchHHHHHHHHHHHHHHHHHhcceeecCC---CC--ccceeEEEEcCCCCcceeeeeCC
Confidence 99999999999999999999999998764 23 44566788889999999999985
No 25
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=100.00 E-value=1.6e-32 Score=214.39 Aligned_cols=127 Identities=24% Similarity=0.372 Sum_probs=111.8
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCCccCCcceeeeccCCCCC
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEIDVVGHNFELLPFGAGRRM 80 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~ 80 (146)
||+||+++. ++|.+.+|++++||.||||+.|+++.+++|+|+++|+||++|+||||++++. .+..++|||+|+|.
T Consensus 325 lRl~p~~~~-~~R~~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~----~~~~~~pFG~G~R~ 399 (452)
T PLN03141 325 LRMGNIING-VMRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKDM----NNSSFTPFGGGQRL 399 (452)
T ss_pred HhccCCcCC-cceeecCCeeECCEEECCCCEEEEehHhccCCchhcCCccccCcccccCCCC----CCCCCCCCCCCCCC
Confidence 699999875 6799999999999999999999999999999999999999999999997532 34579999999999
Q ss_pred CccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeCCC
Q 042720 81 CVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPRLP 140 (146)
Q Consensus 81 C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~ 140 (146)
|+|++||.+|++++++.|+++|++++.++. .. ...++.|..++.+.+++|..
T Consensus 400 C~G~~lA~~el~~~la~ll~~f~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~ 451 (452)
T PLN03141 400 CPGLDLARLEASIFLHHLVTRFRWVAEEDT----IV----NFPTVRMKRKLPIWVTRIDD 451 (452)
T ss_pred CChHHHHHHHHHHHHHHHHhcCeeecCCCC----ee----ecccccCCCCceEEEEeCCC
Confidence 999999999999999999999999986541 11 12466888999999999953
No 26
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.98 E-value=4.6e-32 Score=213.27 Aligned_cols=130 Identities=25% Similarity=0.354 Sum_probs=112.6
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCCccCCcceeeeccCCCCC
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEIDVVGHNFELLPFGAGRRM 80 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~ 80 (146)
||++|+++. ..|.+.+|++++|+.||||+.|.++.+++|+|+++|+||++|+||||++.+ ..+..++|||.|+|.
T Consensus 361 lRl~p~~~~-~~R~~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~----~~~~~~~pFG~G~r~ 435 (490)
T PLN02302 361 LRLINISLT-VFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYT----PKAGTFLPFGLGSRL 435 (490)
T ss_pred HHhCCCccc-chhcccCCEeECCEEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCCC----CCCCCccCCCCCCcC
Confidence 699999988 569999999999999999999999999999999999999999999999643 234579999999999
Q ss_pred CccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeCCCC
Q 042720 81 CVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPRLPL 141 (146)
Q Consensus 81 C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~ 141 (146)
|+|+++|.+|++++++.|+++|++++.++. ..+ .......|..++.+++++|.++
T Consensus 436 C~G~~lA~~e~~~~la~ll~~f~~~~~~~~----~~~--~~~~~~~p~~~~~~~~~~~~~~ 490 (490)
T PLN02302 436 CPGNDLAKLEISIFLHHFLLGYRLERLNPG----CKV--MYLPHPRPKDNCLARITKVASE 490 (490)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCeeEEcCCC----Ccc--eeCCCCCCCCCceEEEEeccCC
Confidence 999999999999999999999999987541 122 1223367888999999998763
No 27
>PLN02936 epsilon-ring hydroxylase
Probab=99.97 E-value=2.1e-31 Score=210.05 Aligned_cols=138 Identities=31% Similarity=0.522 Sum_probs=115.3
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCC--ccCCcceeeeccCCC
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEID--VVGHNFELLPFGAGR 78 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~--~~~~~~~~~~Fg~G~ 78 (146)
||++|+++...+|.+.+|+.++|+.||+|+.|.++.+++|+||++|+||++|+||||+..+.. ....+..++|||.|+
T Consensus 347 lRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~ 426 (489)
T PLN02936 347 MRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGP 426 (489)
T ss_pred hhcCCCcccccceeccCccccCCeEECCCCEEEecHHhccCChhhCCCccccCccccCCCCCCccccCCCcceeCCCCCC
Confidence 799999998777777788888999999999999999999999999999999999999964321 122345899999999
Q ss_pred CCCccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeCCCCCC
Q 042720 79 RMCVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPRLPLDL 143 (146)
Q Consensus 79 r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~~~ 143 (146)
|.|+|++||++|++++++.|+++|++++.++. +... ...+++.+++++.|++++|.--++
T Consensus 427 R~C~G~~la~~~~~~~la~ll~~f~~~~~~~~---~~~~--~~~~~~~~~~~~~v~~~~R~~~~~ 486 (489)
T PLN02936 427 RKCVGDQFALLEAIVALAVLLQRLDLELVPDQ---DIVM--TTGATIHTTNGLYMTVSRRRVPDG 486 (489)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCeEEecCCC---ccce--ecceEEeeCCCeEEEEEeeeCCCC
Confidence 99999999999999999999999999987652 2222 234566678899999999876554
No 28
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.97 E-value=9.9e-32 Score=210.61 Aligned_cols=125 Identities=22% Similarity=0.422 Sum_probs=108.5
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCCccCCcceeeeccCCCCC
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEIDVVGHNFELLPFGAGRRM 80 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~ 80 (146)
||++|++++. .|.+.+|++++|+.||||+.|.++.+++|+|+++|+||++|+||||++.. .+..++|||.|+|.
T Consensus 337 lRl~p~~~~~-~R~~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~-----~~~~~lpFG~G~r~ 410 (463)
T PLN02196 337 LRVASILSFT-FREAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAP-----KPNTFMPFGNGTHS 410 (463)
T ss_pred HhcCCCcccc-ceeeccccccCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCCC-----CCCcccCcCCCCCC
Confidence 6999999984 59999999999999999999999999999999999999999999999632 34589999999999
Q ss_pred CccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEee
Q 042720 81 CVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKP 137 (146)
Q Consensus 81 C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 137 (146)
|+|+++|++|++++++.|+++|++++.++. ..+ .+..+..|++++.++++.
T Consensus 411 C~G~~~A~~e~~~~la~ll~~f~~~~~~~~----~~~--~~~~~~~p~~~~~~~~~~ 461 (463)
T PLN02196 411 CPGNELAKLEISVLIHHLTTKYRWSIVGTS----NGI--QYGPFALPQNGLPIALSR 461 (463)
T ss_pred CchHHHHHHHHHHHHHHHHHhcEEEEcCCC----Cce--EEcccccCCCCceEEEec
Confidence 999999999999999999999999987552 222 234445688888888764
No 29
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.97 E-value=2.2e-31 Score=209.15 Aligned_cols=131 Identities=25% Similarity=0.361 Sum_probs=113.3
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCCccCCcceeeeccCCCCC
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEIDVVGHNFELLPFGAGRRM 80 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~ 80 (146)
||++|+++. +.|.+.+|++++|+.||||+.|+++.+.+|+|+++|+||++|+||||++++.. ......++|||+|+|.
T Consensus 340 LRl~p~~~~-~~R~~~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~-~~~~~~~l~FG~G~r~ 417 (472)
T PLN02987 340 LRVANIIGG-IFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGT-TVPSNVFTPFGGGPRL 417 (472)
T ss_pred HHccCCcCC-ccccCCCCeeECCEEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCCCC-CCCCcceECCCCCCcC
Confidence 699999986 67999999999999999999999999999999999999999999999975332 1234579999999999
Q ss_pred CccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeCCC
Q 042720 81 CVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPRLP 140 (146)
Q Consensus 81 C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~ 140 (146)
|+|++||.+|++++++.|+++|++++.++. +. ....++.|.+++.+++++|.-
T Consensus 418 C~G~~lA~~e~~~~la~ll~~f~~~~~~~~---~~----~~~~~~~p~~~~~~~~~~r~~ 470 (472)
T PLN02987 418 CPGYELARVALSVFLHRLVTRFSWVPAEQD---KL----VFFPTTRTQKRYPINVKRRDV 470 (472)
T ss_pred CCcHHHHHHHHHHHHHHHHhceEEEECCCC---ce----eecccccCCCCceEEEEeccc
Confidence 999999999999999999999999987652 21 223477888899999999853
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=2.2e-30 Score=196.75 Aligned_cols=134 Identities=27% Similarity=0.527 Sum_probs=115.1
Q ss_pred CcccCCCCCcceeEecCCeEEcc----EEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCCcc--CC--cceee
Q 042720 1 MRLHPPVTLLVPRLARENCKVAG----YDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEIDVV--GH--NFELL 72 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g----~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~--~~--~~~~~ 72 (146)
|||+||.+. +.|.+.+|.++.+ |.||+|..|.++...+|+||++|+||+.|+|+||++++.+.. .. .+.+|
T Consensus 344 LRL~~p~~~-~~R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~m 422 (486)
T KOG0684|consen 344 LRLHPPAHS-LMRKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYYYM 422 (486)
T ss_pred HhcCCchhh-HHHhhccceeeccCCcceecCCCCEEEeccccccCCccccCChhhCChhhccCCCccccccccccccccc
Confidence 799998887 4599999999976 999999999999999999999999999999999998765431 22 23469
Q ss_pred eccCCCCCCccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeCC
Q 042720 73 PFGAGRRMCVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPRL 139 (146)
Q Consensus 73 ~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 139 (146)
|||+|.+.|||+.||.+|++.++..++++||+++.++ +.+-.....++++|.+++.++.+.|.
T Consensus 423 pfGaGr~~CpGr~FA~~eIk~~~~l~L~~fdleLid~----~~P~~d~s~~v~~P~g~v~irYK~R~ 485 (486)
T KOG0684|consen 423 PFGAGRHRCPGRSFAYLEIKQFISLLLRHFDLELIDG----PFPEVDYSRMVMQPEGDVRIRYKRRP 485 (486)
T ss_pred ccCCCcCCCCchHHHHHHHHHHHHHHHHHcceeecCC----CCCCCCHHHhhcCCCCCceEEEeecC
Confidence 9999999999999999999999999999999999986 22222334558899999999999886
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=5.9e-28 Score=186.94 Aligned_cols=121 Identities=34% Similarity=0.542 Sum_probs=104.3
Q ss_pred CcccCCCCCcceeEecCCeEEccEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCCccCCcceeeeccCCCCC
Q 042720 1 MRLHPPVTLLVPRLARENCKVAGYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEIDVVGHNFELLPFGAGRRM 80 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~ 80 (146)
||+|||++. +.|.+++|++++|+.||||+.|+++++++||||++|++|++|+|+||. ..++|||+|+|.
T Consensus 290 LR~~ppv~~-~~R~~~~d~~igg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~----------~~~l~FG~G~H~ 358 (411)
T COG2124 290 LRLYPPVPL-ARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN----------NAHLPFGGGPHR 358 (411)
T ss_pred HHhCCchhc-cceeccCCEeeCCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC----------CCCcCCCCCCcc
Confidence 799999999 889999999999999999999999999999999999999999999997 378999999999
Q ss_pred CccHHHHHHHHHHHHHHHHhhceEEccCCCcCCCCCcccceeeEecCCCCeEEEEeeC
Q 042720 81 CVGYALGLITVQSTLANLLHGFEWKLPGNVRKEDLDMEERFGVTTSRKNPLLVVPKPR 138 (146)
Q Consensus 81 C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 138 (146)
|+|..||.+|++++++.++++|++....+ . .. .....+..+.....+.++.+
T Consensus 359 ClG~~lA~~E~~~~l~~ll~r~~~~~~~~-~-~~----~~~~~~~~~~g~~~l~v~~~ 410 (411)
T COG2124 359 CLGAALARLELKVALAELLRRFPLLLLAE-P-PP----LVRRPTLVPRGGERLPVRRR 410 (411)
T ss_pred ccCHHHHHHHHHHHHHHHHHhCchhhcCC-C-CC----ccccccccCCCcceeeeecC
Confidence 99999999999999999999999987654 1 11 12234445666666666554
No 32
>PLN02648 allene oxide synthase
Probab=99.94 E-value=2e-26 Score=181.27 Aligned_cols=105 Identities=24% Similarity=0.537 Sum_probs=90.6
Q ss_pred CcccCCCCCcceeEecCCeEEc----cEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCCCCCCCccCCcceeeec--
Q 042720 1 MRLHPPVTLLVPRLARENCKVA----GYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFIGKEIDVVGHNFELLPF-- 74 (146)
Q Consensus 1 lRl~p~~~~~~~r~~~~d~~l~----g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~F-- 74 (146)
||++|+++.. .|.+.+|++++ ||.||||+.|+++.+.+|+||++|+||++|+|+||++++... ...+++|
T Consensus 344 LRl~p~v~~~-~r~a~~d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~~~dP~~F~PeRf~~~~~~~---~~~~~~f~~ 419 (480)
T PLN02648 344 LRIEPPVPFQ-YGRAREDFVIESHDAAFEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGEK---LLKYVFWSN 419 (480)
T ss_pred HhhcCCcccc-cceecCCEEEecCCceEEECCCCEEEEChHHHhCCcccCCCcceeCCCCCCCCCccc---cccccccCC
Confidence 7999999984 58899999996 799999999999999999999999999999999998643221 1233444
Q ss_pred -------cCCCCCCccHHHHHHHHHHHHHHHHhhce-EEccCC
Q 042720 75 -------GAGRRMCVGYALGLITVQSTLANLLHGFE-WKLPGN 109 (146)
Q Consensus 75 -------g~G~r~C~G~~~a~~~~~~~l~~ll~~f~-~~~~~~ 109 (146)
|+|+|.|+|++||.+|++++++.|+++|+ +++.++
T Consensus 420 g~~~~~~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~ 462 (480)
T PLN02648 420 GRETESPTVGNKQCAGKDFVVLVARLFVAELFLRYDSFEIEVD 462 (480)
T ss_pred CcccCCCCCCCccCccHHHHHHHHHHHHHHHHHHhCEEeecCC
Confidence 67789999999999999999999999998 998766
No 33
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=72.35 E-value=4.7 Score=28.66 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=17.4
Q ss_pred EecCCeEEccEEeCCCCEEEe
Q 042720 14 LARENCKVAGYDIIKNSRVIV 34 (146)
Q Consensus 14 ~~~~d~~l~g~~ip~g~~v~~ 34 (146)
...+|+.++|..|||||.++-
T Consensus 74 RLle~i~i~g~~IPkgt~l~G 94 (200)
T PF12508_consen 74 RLLEDIQIGGILIPKGTYLYG 94 (200)
T ss_pred EEcCceEECCEEeCCCCEEEE
Confidence 356788889999999998865
No 34
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=70.63 E-value=2 Score=30.19 Aligned_cols=36 Identities=25% Similarity=0.512 Sum_probs=24.0
Q ss_pred CCCcCCCCCCCCCCCccCCcceeeeccCCCCCCccH
Q 042720 49 PNEFCPERFIGKEIDVVGHNFELLPFGAGRRMCVGY 84 (146)
Q Consensus 49 p~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~ 84 (146)
-.+|+|.||-.--.....+.....-|++|+-.|-|.
T Consensus 49 N~ey~Pk~~~aVimrir~P~~ta~I~ssGKi~ctgA 84 (200)
T KOG3302|consen 49 NAEYNPKRFAAVIMRIRSPRTTALIFSSGKIVCTGA 84 (200)
T ss_pred ccccCcccccEEEEEEcCCceEEEEecCCcEEEecc
Confidence 367999998632112223444667899999999973
No 35
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=69.08 E-value=2.9 Score=28.98 Aligned_cols=35 Identities=26% Similarity=0.548 Sum_probs=24.7
Q ss_pred CCcCCCCCCCCCCCccCCcceeeeccCCCCCCccH
Q 042720 50 NEFCPERFIGKEIDVVGHNFELLPFGAGRRMCVGY 84 (146)
Q Consensus 50 ~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~ 84 (146)
.+|+|+||-.---....+....+-|+.|+-.|.|-
T Consensus 29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa 63 (174)
T cd04518 29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGA 63 (174)
T ss_pred cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEcc
Confidence 47889888532222233456788999999999985
No 36
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=68.46 E-value=4 Score=23.07 Aligned_cols=7 Identities=43% Similarity=0.833 Sum_probs=5.7
Q ss_pred CCCCCCC
Q 042720 53 CPERFIG 59 (146)
Q Consensus 53 ~P~R~~~ 59 (146)
||||||.
T Consensus 44 DPERWLP 50 (59)
T PF08492_consen 44 DPERWLP 50 (59)
T ss_pred CccccCc
Confidence 6889985
No 37
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=64.21 E-value=6.4 Score=26.24 Aligned_cols=22 Identities=14% Similarity=0.439 Sum_probs=16.6
Q ss_pred CCccHHHHHHHHHHHHHHHHhh
Q 042720 80 MCVGYALGLITVQSTLANLLHG 101 (146)
Q Consensus 80 ~C~G~~~a~~~~~~~l~~ll~~ 101 (146)
+|.|++||+.++-.++..|+..
T Consensus 19 N~~gKKFsE~QiN~FIs~lIts 40 (148)
T PF09201_consen 19 NCLGKKFSETQINAFISHLITS 40 (148)
T ss_dssp ETTS----HHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999875
No 38
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=63.91 E-value=4.5 Score=28.08 Aligned_cols=36 Identities=28% Similarity=0.497 Sum_probs=25.0
Q ss_pred CCcCCCCCCCCCCCccCCcceeeeccCCCCCCccHH
Q 042720 50 NEFCPERFIGKEIDVVGHNFELLPFGAGRRMCVGYA 85 (146)
Q Consensus 50 ~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~ 85 (146)
.+++|++|-.---....+....+-|..|+-.|-|..
T Consensus 35 aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred CccCHhHCCeeEEEecCCcceEEEEecCcEEEeccC
Confidence 468888885321122334558899999999999964
No 39
>PRK00394 transcription factor; Reviewed
Probab=62.72 E-value=5 Score=27.97 Aligned_cols=34 Identities=29% Similarity=0.592 Sum_probs=24.1
Q ss_pred CCcCCCCCCCCCCCccCCcceeeeccCCCCCCcc
Q 042720 50 NEFCPERFIGKEIDVVGHNFELLPFGAGRRMCVG 83 (146)
Q Consensus 50 ~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G 83 (146)
.+|+|+||-.---....+....+-|+.|+-.|.|
T Consensus 28 ~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tG 61 (179)
T PRK00394 28 AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTG 61 (179)
T ss_pred ceeCcccCceEEEEecCCceEEEEEcCCcEEEEc
Confidence 4788988854222223345578899999999998
No 40
>PLN00062 TATA-box-binding protein; Provisional
Probab=55.81 E-value=6.9 Score=27.30 Aligned_cols=55 Identities=18% Similarity=0.367 Sum_probs=32.0
Q ss_pred CCcCCCCCCCCCCCccCCcceeeeccCCCCCCccH-HHHHHH-HHHHHHHHHhhceE
Q 042720 50 NEFCPERFIGKEIDVVGHNFELLPFGAGRRMCVGY-ALGLIT-VQSTLANLLHGFEW 104 (146)
Q Consensus 50 ~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~-~~a~~~-~~~~l~~ll~~f~~ 104 (146)
.+|+||+|-.---....+....+-|+.|+-.|-|- ...... ..--++.+|++..+
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~~~~~L~~lg~ 85 (179)
T PLN00062 29 AEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEHDSKLAARKYARIIQKLGF 85 (179)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCC
Confidence 57889888532112223445788999999999984 222221 22234455655544
No 41
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=54.78 E-value=8.1 Score=26.77 Aligned_cols=56 Identities=20% Similarity=0.382 Sum_probs=32.3
Q ss_pred CCcCCCCCCCCCCCccCCcceeeeccCCCCCCccH-HH--HHHHHHHHHHHHHhhceEEc
Q 042720 50 NEFCPERFIGKEIDVVGHNFELLPFGAGRRMCVGY-AL--GLITVQSTLANLLHGFEWKL 106 (146)
Q Consensus 50 ~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~-~~--a~~~~~~~l~~ll~~f~~~~ 106 (146)
-+++||||-.---....+....+-|+.|+-.|.|- .. |...++ -++.+|++..+..
T Consensus 29 ~~YePe~fpgli~R~~~P~~t~lIf~sGKivitGaks~~~~~~a~~-~~~~~L~~~g~~~ 87 (174)
T cd00652 29 AEYNPKRFPGVIMRLREPKTTALIFSSGKMVITGAKSEEDAKLAAR-KYARILQKLGFPV 87 (174)
T ss_pred cEECCCccceEEEEcCCCcEEEEEECCCEEEEEecCCHHHHHHHHH-HHHHHHHHcCCCc
Confidence 47888888532222233455788999999999983 22 222222 2344555555433
No 42
>PF14550 Peptidase_U35_2: Putative phage protease XkdF
Probab=53.07 E-value=10 Score=24.79 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=18.5
Q ss_pred eEecCCeEEccEEeCCCCEEEee
Q 042720 13 RLARENCKVAGYDIIKNSRVIVN 35 (146)
Q Consensus 13 r~~~~d~~l~g~~ip~g~~v~~~ 35 (146)
-+++.|..++|-.||+|+.|+.-
T Consensus 71 ~I~~~d~~~~g~~i~~GtWv~~~ 93 (122)
T PF14550_consen 71 YIAPEDMEIGGETIPKGTWVVGV 93 (122)
T ss_pred EecCCCcccCCeeecceEEEEEE
Confidence 35667899999999999998543
No 43
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=52.19 E-value=8.3 Score=26.75 Aligned_cols=56 Identities=18% Similarity=0.366 Sum_probs=31.7
Q ss_pred CCcCCCCCCCCCCCccCCcceeeeccCCCCCCcc-HHHHHHH-HHHHHHHHHhhceEE
Q 042720 50 NEFCPERFIGKEIDVVGHNFELLPFGAGRRMCVG-YALGLIT-VQSTLANLLHGFEWK 105 (146)
Q Consensus 50 ~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G-~~~a~~~-~~~~l~~ll~~f~~~ 105 (146)
.+|+|++|-.---....+....+-|+.|+-.|-| +...... ..--++.+|++..+.
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~i~~~L~~~g~~ 86 (174)
T cd04516 29 AEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTGAKSEDDSKLAARKYARIIQKLGFP 86 (174)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCCC
Confidence 5788888753211222344567899999999998 3222111 222344556655543
No 44
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=45.32 E-value=23 Score=28.11 Aligned_cols=21 Identities=14% Similarity=0.007 Sum_probs=17.0
Q ss_pred ecCCeEEccEEeCCCCEEEee
Q 042720 15 ARENCKVAGYDIIKNSRVIVN 35 (146)
Q Consensus 15 ~~~d~~l~g~~ip~g~~v~~~ 35 (146)
..+|+.++|..||+||.|+-.
T Consensus 278 Lle~~~v~~~~ipkgt~l~g~ 298 (410)
T TIGR03779 278 LLEPIQAGDLVIPKGTVLYGT 298 (410)
T ss_pred EcCceeeCCEEecCCCEEEEE
Confidence 456788899999999988654
No 45
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=44.79 E-value=6.8 Score=23.61 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=22.8
Q ss_pred CCcCCCCCCCCCCCccCCcceeeeccCCCCCCccH
Q 042720 50 NEFCPERFIGKEIDVVGHNFELLPFGAGRRMCVGY 84 (146)
Q Consensus 50 ~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~ 84 (146)
.+++||+|-.---....+....+-|..|+=.|.|-
T Consensus 31 ~~YePe~fpgl~~r~~~p~~t~~IF~sGki~itGa 65 (86)
T PF00352_consen 31 VEYEPERFPGLIYRLRNPKATVLIFSSGKIVITGA 65 (86)
T ss_dssp EEEETTTESSEEEEETTTTEEEEEETTSEEEEEEE
T ss_pred cEEeeccCCeEEEeecCCcEEEEEEcCCEEEEEec
Confidence 36788876421111223455788999999999985
No 46
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=38.70 E-value=13 Score=17.72 Aligned_cols=6 Identities=67% Similarity=1.259 Sum_probs=3.6
Q ss_pred cCCCCC
Q 042720 52 FCPERF 57 (146)
Q Consensus 52 f~P~R~ 57 (146)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 456665
No 47
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=37.30 E-value=24 Score=21.42 Aligned_cols=20 Identities=20% Similarity=0.705 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhceEEccCC
Q 042720 90 TVQSTLANLLHGFEWKLPGN 109 (146)
Q Consensus 90 ~~~~~l~~ll~~f~~~~~~~ 109 (146)
-|+-++.++|+-|||.|..-
T Consensus 61 ~IrdAVsqVLkGYDWtLVPm 80 (84)
T PF12444_consen 61 CIRDAVSQVLKGYDWTLVPM 80 (84)
T ss_pred HHHHHHHHHhccCCceeeec
Confidence 46778999999999998653
No 48
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=37.25 E-value=16 Score=20.26 Aligned_cols=10 Identities=50% Similarity=1.066 Sum_probs=8.6
Q ss_pred eccCCCCCCc
Q 042720 73 PFGAGRRMCV 82 (146)
Q Consensus 73 ~Fg~G~r~C~ 82 (146)
+||.|.|.|-
T Consensus 13 kfg~GsrsC~ 22 (56)
T KOG3506|consen 13 KFGQGSRSCR 22 (56)
T ss_pred ccCCCCccee
Confidence 6999999875
No 49
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=37.23 E-value=44 Score=22.54 Aligned_cols=22 Identities=5% Similarity=0.237 Sum_probs=17.3
Q ss_pred ecCCeEEccEEeCCCCEEEeeh
Q 042720 15 ARENCKVAGYDIIKNSRVIVNV 36 (146)
Q Consensus 15 ~~~d~~l~g~~ip~g~~v~~~~ 36 (146)
..+|++++|..||+|+.-+..+
T Consensus 52 f~~dv~igGk~l~AG~Ysl~ti 73 (145)
T PF11138_consen 52 FSKDVTIGGKKLKAGTYSLFTI 73 (145)
T ss_pred ECCCeEECCEEcCCeeEEEEEe
Confidence 4678999999999998655543
No 50
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=37.23 E-value=15 Score=16.95 Aligned_cols=6 Identities=67% Similarity=1.259 Sum_probs=3.3
Q ss_pred cCCCCC
Q 042720 52 FCPERF 57 (146)
Q Consensus 52 f~P~R~ 57 (146)
++||||
T Consensus 20 l~PErF 25 (25)
T PF09604_consen 20 LRPERF 25 (25)
T ss_pred hCcccC
Confidence 356665
No 51
>PF11227 DUF3025: Protein of unknown function (DUF3025); InterPro: IPR021390 Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.
Probab=30.97 E-value=25 Score=25.22 Aligned_cols=25 Identities=24% Similarity=0.586 Sum_probs=18.7
Q ss_pred EEeehhhh-ccCCCCCCCCCCcCCCC
Q 042720 32 VIVNVWAI-GRDPTLWEKPNEFCPER 56 (146)
Q Consensus 32 v~~~~~~~-~~d~~~~~~p~~f~P~R 56 (146)
.-++-|.- +.|+.+|.|.+.|+|.|
T Consensus 186 LGiPGW~~~n~~~~FY~d~~~FRp~R 211 (212)
T PF11227_consen 186 LGIPGWWPDNEDPAFYDDTDVFRPGR 211 (212)
T ss_pred cCCCCCCCCCCCcccccCccccCCCC
Confidence 33444444 78999999999999987
No 52
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=29.18 E-value=57 Score=21.18 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=16.8
Q ss_pred CCCccHHHHHHHHHHHHHHHHh
Q 042720 79 RMCVGYALGLITVQSTLANLLH 100 (146)
Q Consensus 79 r~C~G~~~a~~~~~~~l~~ll~ 100 (146)
|.|||..++....+.++..|-.
T Consensus 5 H~Cpgl~~G~r~~~~a~~~l~~ 26 (131)
T PF02663_consen 5 HLCPGLALGYRMAKYALEELGI 26 (131)
T ss_dssp S--HHHHHHHHHHHHHHHHHTS
T ss_pred CcCccHHHHHHHHHHHHHHcCC
Confidence 7899999999999888887743
No 53
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=25.45 E-value=18 Score=16.86 Aligned_cols=7 Identities=57% Similarity=1.023 Sum_probs=4.2
Q ss_pred cCCCCCC
Q 042720 52 FCPERFI 58 (146)
Q Consensus 52 f~P~R~~ 58 (146)
++||||.
T Consensus 19 l~PErF~ 25 (26)
T TIGR02115 19 LRPERFX 25 (26)
T ss_pred hCHHhcC
Confidence 4577764
No 54
>PF01629 DUF22: Domain of unknown function DUF22; InterPro: IPR002572 This region is found in 1 to 3 copies in archaeal proteins whose function is unknown. It only appears in multiple copies in proteins from Archaeoglobus fulgidus.
Probab=24.55 E-value=85 Score=20.17 Aligned_cols=25 Identities=12% Similarity=0.022 Sum_probs=20.1
Q ss_pred ccEEeCCCCEEEeehhhhccCCCCC
Q 042720 22 AGYDIIKNSRVIVNVWAIGRDPTLW 46 (146)
Q Consensus 22 ~g~~ip~g~~v~~~~~~~~~d~~~~ 46 (146)
....||++|.++...+.-|.--..-
T Consensus 60 k~I~iP~~tIv~p~~~~rha~G~vi 84 (112)
T PF01629_consen 60 KKIEIPPNTIVMPCAYMRHALGSVI 84 (112)
T ss_pred EEEecCCCCEEEEchHhhccCccEE
Confidence 3578999999999999888765554
No 55
>PHA03162 hypothetical protein; Provisional
Probab=23.22 E-value=54 Score=21.69 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=16.9
Q ss_pred cCCCCCCccHHHHHHHHHHHHHHH
Q 042720 75 GAGRRMCVGYALGLITVQSTLANL 98 (146)
Q Consensus 75 g~G~r~C~G~~~a~~~~~~~l~~l 98 (146)
++|.+.||++...+-++..=|+.|
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~kL 25 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAKL 25 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHHH
Confidence 468999999887666665555544
No 56
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=22.87 E-value=77 Score=21.95 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=22.3
Q ss_pred CCcCCCCCCCCCCCccCCcceeeeccCCCCCCccH
Q 042720 50 NEFCPERFIGKEIDVVGHNFELLPFGAGRRMCVGY 84 (146)
Q Consensus 50 ~~f~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~ 84 (146)
.+|+| ||-.---....+....+-|+.|+-.|.|-
T Consensus 30 ~eYeP-~fpgli~R~~~Pk~t~lIF~sGKiviTGa 63 (174)
T cd04517 30 VEYNP-RYPKVTMRLREPRATASVWSSGKITITGA 63 (174)
T ss_pred CEEeC-CCCEEEEEecCCcEEEEEECCCeEEEEcc
Confidence 57888 77431111222344778999999999985
No 57
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=21.66 E-value=1.1e+02 Score=22.19 Aligned_cols=34 Identities=9% Similarity=0.111 Sum_probs=24.4
Q ss_pred cEEeCCCCEEEeehhhhccCCCCCCCCCCcCCCCCC
Q 042720 23 GYDIIKNSRVIVNVWAIGRDPTLWEKPNEFCPERFI 58 (146)
Q Consensus 23 g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~ 58 (146)
.+...+|++|+++.+.+.|--.-|.+.. ...||+
T Consensus 221 ~~~l~~Gdivi~DN~r~lHgR~~f~~~~--~~~R~L 254 (262)
T cd00250 221 TVKLEPGDLLIFDNRRVLHGRTAFSPRY--GGDRWL 254 (262)
T ss_pred EEEcCCCCEEEEechhhhcCCCCCCCCC--CCceEE
Confidence 4678899999999998877665564322 345776
No 58
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.50 E-value=65 Score=26.97 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=10.4
Q ss_pred cCCCCCCCCCCcCCCCCCC
Q 042720 41 RDPTLWEKPNEFCPERFIG 59 (146)
Q Consensus 41 ~d~~~~~~p~~f~P~R~~~ 59 (146)
.+|..|...-.=||||||.
T Consensus 570 k~pknyn~~~tPDPERWLP 588 (652)
T KOG2376|consen 570 KLPKNYNPKVTPDPERWLP 588 (652)
T ss_pred CCcccCCCCCCCChhhccc
Confidence 3455553333345788885
Done!