Query 042723
Match_columns 262
No_of_seqs 124 out of 1156
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:48:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03750 proteasome_alpha_type_ 100.0 2.8E-56 6E-61 386.7 28.4 216 8-226 1-226 (227)
2 KOG0176 20S proteasome, regula 100.0 4.4E-57 9.4E-62 368.6 19.8 229 1-229 1-241 (241)
3 PRK03996 proteasome subunit al 100.0 7E-56 1.5E-60 387.5 28.8 227 1-230 3-240 (241)
4 PTZ00246 proteasome subunit al 100.0 4.5E-54 9.7E-59 378.6 29.2 226 5-233 2-245 (253)
5 cd03751 proteasome_alpha_type_ 100.0 4.1E-53 8.8E-58 363.3 25.7 203 5-210 1-212 (212)
6 TIGR03633 arc_protsome_A prote 100.0 6.8E-53 1.5E-57 364.8 26.7 212 7-221 2-224 (224)
7 cd03756 proteasome_alpha_arche 100.0 3.8E-52 8.2E-57 357.1 26.2 202 7-211 1-210 (211)
8 cd03752 proteasome_alpha_type_ 100.0 6.7E-52 1.4E-56 356.1 25.8 202 6-210 1-213 (213)
9 cd03755 proteasome_alpha_type_ 100.0 7.1E-52 1.5E-56 354.4 25.3 198 8-210 1-207 (207)
10 cd03749 proteasome_alpha_type_ 100.0 1.4E-51 3E-56 353.6 25.7 199 8-211 1-211 (211)
11 cd03754 proteasome_alpha_type_ 100.0 2.8E-51 6E-56 352.7 25.1 201 7-210 1-215 (215)
12 cd03753 proteasome_alpha_type_ 100.0 6.8E-51 1.5E-55 349.8 25.8 203 8-210 1-213 (213)
13 cd01911 proteasome_alpha prote 100.0 8.2E-51 1.8E-55 348.3 24.3 200 8-210 1-209 (209)
14 COG0638 PRE1 20S proteasome, a 100.0 8.8E-50 1.9E-54 347.4 28.1 222 6-232 1-235 (236)
15 KOG0183 20S proteasome, regula 100.0 4E-51 8.7E-56 337.4 17.1 222 6-232 2-236 (249)
16 KOG0181 20S proteasome, regula 100.0 1E-49 2.2E-54 324.7 18.0 223 4-229 2-233 (233)
17 KOG0184 20S proteasome, regula 100.0 9.1E-49 2E-53 324.9 19.4 222 1-226 1-235 (254)
18 KOG0863 20S proteasome, regula 100.0 4E-48 8.6E-53 322.7 19.9 223 3-230 1-237 (264)
19 KOG0182 20S proteasome, regula 100.0 1.3E-47 2.8E-52 316.0 21.8 226 3-231 4-244 (246)
20 KOG0178 20S proteasome, regula 100.0 8.3E-47 1.8E-51 311.1 21.4 227 6-235 3-246 (249)
21 TIGR03690 20S_bact_beta protea 100.0 9.5E-41 2.1E-45 288.0 24.6 197 33-233 1-218 (219)
22 PTZ00488 Proteasome subunit be 100.0 1.3E-40 2.8E-45 291.5 25.0 199 30-235 35-244 (247)
23 TIGR03691 20S_bact_alpha prote 100.0 5.9E-40 1.3E-44 284.2 24.5 205 16-226 8-228 (228)
24 cd03760 proteasome_beta_type_4 100.0 5.9E-40 1.3E-44 278.7 22.7 181 33-218 1-196 (197)
25 cd03761 proteasome_beta_type_5 100.0 2E-39 4.4E-44 273.5 23.8 176 35-217 1-187 (188)
26 cd03758 proteasome_beta_type_2 100.0 2.8E-39 6E-44 273.8 23.2 178 35-217 2-191 (193)
27 cd03759 proteasome_beta_type_3 100.0 3.1E-39 6.7E-44 273.9 22.6 174 33-213 2-187 (195)
28 TIGR03634 arc_protsome_B prote 100.0 1.5E-38 3.2E-43 267.4 23.3 173 34-213 1-183 (185)
29 cd03765 proteasome_beta_bacter 100.0 1.5E-38 3.3E-43 276.0 21.7 207 35-242 1-233 (236)
30 cd03757 proteasome_beta_type_1 100.0 3.3E-38 7.2E-43 270.9 22.2 178 31-215 5-203 (212)
31 cd03764 proteasome_beta_archea 100.0 8.4E-38 1.8E-42 263.5 23.9 176 35-217 1-187 (188)
32 cd03763 proteasome_beta_type_7 100.0 4.1E-37 8.9E-42 259.6 23.4 177 35-219 1-188 (189)
33 cd03762 proteasome_beta_type_6 100.0 1.2E-36 2.6E-41 256.5 23.3 174 35-216 1-186 (188)
34 PF00227 Proteasome: Proteasom 100.0 1.3E-36 2.8E-41 255.7 20.4 177 31-210 1-190 (190)
35 cd01912 proteasome_beta protea 100.0 1.3E-35 2.9E-40 249.9 23.6 175 35-216 1-187 (189)
36 cd01906 proteasome_protease_Hs 100.0 9.3E-35 2E-39 242.9 23.2 171 35-210 1-182 (182)
37 KOG0177 20S proteasome, regula 100.0 2.4E-33 5.1E-38 228.1 16.2 180 35-219 2-193 (200)
38 KOG0175 20S proteasome, regula 100.0 4.6E-33 9.9E-38 235.8 17.0 196 32-234 69-275 (285)
39 KOG0173 20S proteasome, regula 100.0 2.2E-31 4.7E-36 225.1 15.9 179 27-213 30-218 (271)
40 KOG0185 20S proteasome, regula 100.0 2.1E-31 4.6E-36 223.1 13.9 209 10-223 11-241 (256)
41 KOG0179 20S proteasome, regula 100.0 3.1E-30 6.7E-35 212.8 17.5 178 29-213 24-223 (235)
42 KOG0180 20S proteasome, regula 100.0 2.8E-28 6.1E-33 195.7 16.5 174 33-213 7-192 (204)
43 KOG0174 20S proteasome, regula 100.0 1.7E-28 3.7E-33 200.4 14.6 189 30-226 15-217 (224)
44 PRK05456 ATP-dependent proteas 99.9 2.6E-26 5.6E-31 190.5 18.4 157 34-209 1-171 (172)
45 cd01901 Ntn_hydrolase The Ntn 99.9 1.5E-24 3.3E-29 175.8 21.2 153 35-193 1-163 (164)
46 cd01913 protease_HslV Protease 99.9 7.5E-25 1.6E-29 180.8 17.7 155 35-209 1-170 (171)
47 TIGR03692 ATP_dep_HslV ATP-dep 99.9 4.7E-24 1E-28 176.0 17.6 156 35-209 1-170 (171)
48 PF10584 Proteasome_A_N: Prote 99.4 5.4E-14 1.2E-18 76.7 2.3 23 8-30 1-23 (23)
49 COG3484 Predicted proteasome-t 99.2 1.5E-10 3.2E-15 96.2 12.0 202 34-236 1-228 (255)
50 COG5405 HslV ATP-dependent pro 99.2 1.5E-10 3.3E-15 92.9 10.8 160 33-211 3-176 (178)
51 PF09894 DUF2121: Uncharacteri 86.3 2.8 6E-05 35.3 6.5 49 165-213 131-180 (194)
52 COG4079 Uncharacterized protei 80.8 5.2 0.00011 35.0 6.1 63 164-226 131-197 (293)
53 KOG3361 Iron binding protein i 78.8 3.1 6.7E-05 32.9 3.8 84 144-236 71-154 (157)
54 KOG0695 Serine/threonine prote 66.9 17 0.00036 33.8 6.1 68 174-246 30-107 (593)
55 cd06404 PB1_aPKC PB1 domain is 57.2 37 0.0008 24.7 5.3 56 176-236 17-75 (83)
56 PRK08868 flagellar protein Fla 55.1 67 0.0014 25.9 7.0 52 181-232 73-133 (144)
57 smart00481 POLIIIAc DNA polyme 49.7 20 0.00042 24.2 2.8 31 13-43 6-37 (67)
58 PF07499 RuvA_C: RuvA, C-termi 48.3 13 0.00028 23.7 1.6 33 159-191 12-45 (47)
59 cd06399 PB1_P40 The PB1 domain 48.2 41 0.0009 24.7 4.3 54 180-243 29-85 (92)
60 PRK08452 flagellar protein Fla 46.7 97 0.0021 24.3 6.6 30 202-231 81-114 (124)
61 PRK07738 flagellar protein Fla 44.1 1.1E+02 0.0023 23.8 6.4 51 181-231 48-107 (117)
62 PF03646 FlaG: FlaG protein; 42.0 51 0.0011 24.6 4.3 30 202-231 65-98 (107)
63 COG3193 GlcG Uncharacterized p 28.1 2E+02 0.0043 23.1 5.7 35 176-213 5-39 (141)
64 COG1334 FlaG Uncharacterized f 26.3 2.5E+02 0.0055 21.9 5.9 28 203-230 78-109 (120)
65 PF06057 VirJ: Bacterial virul 26.1 70 0.0015 27.1 3.0 33 98-137 44-76 (192)
66 PF08289 Flu_M1_C: Influenza M 25.9 1.9E+02 0.0041 21.1 4.6 47 73-119 41-87 (95)
67 COG4728 Uncharacterized protei 25.1 73 0.0016 24.2 2.6 31 58-88 9-39 (124)
68 PRK09732 hypothetical protein; 24.5 2.6E+02 0.0056 22.1 5.8 41 177-220 5-50 (134)
69 PF11211 DUF2997: Protein of u 24.0 1E+02 0.0023 19.8 2.9 33 144-176 3-35 (48)
70 PF02811 PHP: PHP domain; Int 23.7 77 0.0017 25.0 2.8 31 13-43 7-38 (175)
71 COG4302 EutC Ethanolamine ammo 21.9 3.6E+02 0.0077 24.0 6.5 120 67-204 163-291 (294)
72 COG0822 IscU NifU homolog invo 21.8 4.3E+02 0.0093 21.3 7.0 93 141-234 43-146 (150)
73 PRK14065 exodeoxyribonuclease 21.2 2.2E+02 0.0048 20.8 4.3 32 165-196 32-63 (86)
74 COG1754 Uncharacterized C-term 21.1 77 0.0017 28.5 2.4 56 133-191 77-136 (298)
75 PF02609 Exonuc_VII_S: Exonucl 20.1 2.5E+02 0.0055 18.1 4.2 31 166-196 7-37 (53)
No 1
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.8e-56 Score=386.75 Aligned_cols=216 Identities=40% Similarity=0.696 Sum_probs=209.6
Q ss_pred CCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecCHHHHHH
Q 042723 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIADART 79 (262)
Q Consensus 8 yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~ 79 (262)
||+.+|+|||||||+|||||++|+++|+|+|||+++ ++.+++++.+++.+||++|+++++++++|..+|++.
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFRV 80 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHHH
Confidence 899999999999999999999999999999999999 666678888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecCeEE
Q 042723 80 LVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKA 159 (262)
Q Consensus 80 l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~~~a 159 (262)
+.+.++.++..|++.++++++++.++++|++++|.|++++ +.|||+|++||||||++||+||.+||+|++.+++++|
T Consensus 81 l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~---~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~~~~~~~a 157 (227)
T cd03750 81 LVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSG---GVRPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKATA 157 (227)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCC---CCCChheEEEEEEEeCCCCEEEEECCCCCEEeeeEEE
Confidence 9999999999999999999999999999999999999998 8999999999999998899999999999999999999
Q ss_pred ECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC--eEEcCHhHHHHHH
Q 042723 160 IGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVI 226 (262)
Q Consensus 160 ~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii~k~--~~~~~~~ei~~~l 226 (262)
+|+|+..++++||++|+++|+++||++++++||+.+.+|++++.+++|.+|+++ +++++++||++++
T Consensus 158 ~G~g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~l~~~~iev~iv~~~~~~~~~~~~ei~~~~ 226 (227)
T cd03750 158 IGKNYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQMTEKNIEIGICGETKGFRLLTPAEIKDYL 226 (227)
T ss_pred ECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCEEECCHHHHHHHh
Confidence 999999999999999999999999999999999999998889999999999995 9999999999987
No 2
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-57 Score=368.59 Aligned_cols=229 Identities=79% Similarity=1.178 Sum_probs=220.4
Q ss_pred CCCCcCCCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEec
Q 042723 1 MFFTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSG 72 (262)
Q Consensus 1 ~~~~~~~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG 72 (262)
||.+++.||+.+++|||||||||||||++|++.|+|.|||+.+ ||.++++..+++++||++|++||+|++||
T Consensus 1 mfltrseydrgVNTfSpEGRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SG 80 (241)
T KOG0176|consen 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSG 80 (241)
T ss_pred CcccHHHhcccccccCCCceeeehhhHHHHHhcCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeeccc
Confidence 8999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCC-cc-CCCccceEEEEEEEEcCCCCeEEEECCCC
Q 042723 73 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGD-EE-SMSRPFGVSLLIAGSDENGPSLYYTDPSG 150 (262)
Q Consensus 73 ~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~-~~-~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G 150 (262)
+.+|++.+++..|.+++++++.|+++++++.+.+.++++...|.... .. .-.|||||++|+||+|.+||+||..||+|
T Consensus 81 l~aDarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSG 160 (241)
T KOG0176|consen 81 LIADARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSG 160 (241)
T ss_pred cccchHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCC
Confidence 99999999999999999999999999999999999999998887664 22 45699999999999999999999999999
Q ss_pred ceeecCeEEECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC--eEEcCHhHHHHHHHh
Q 042723 151 TFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVINR 228 (262)
Q Consensus 151 ~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii~k~--~~~~~~~ei~~~l~~ 228 (262)
++.++++-|+|+|+.-+.+.|++.|+++|+++||+.+++..|+.+++..++.+|+|+.+|+++ |++++++|++.++.+
T Consensus 161 tf~~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeKl~~~Nvev~~vt~e~~f~~~t~EE~~~~i~~ 240 (241)
T KOG0176|consen 161 TFIRYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEEKLNSNNVEVAVVTPEGEFHIYTPEEVEQVIKR 240 (241)
T ss_pred ceEEecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhcCccceEEEEEcccCceEecCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999998 999999999999865
Q ss_pred h
Q 042723 229 P 229 (262)
Q Consensus 229 ~ 229 (262)
+
T Consensus 241 ~ 241 (241)
T KOG0176|consen 241 L 241 (241)
T ss_pred C
Confidence 3
No 3
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=7e-56 Score=387.46 Aligned_cols=227 Identities=48% Similarity=0.809 Sum_probs=218.5
Q ss_pred CCCCcCCCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEec
Q 042723 1 MFFTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSG 72 (262)
Q Consensus 1 ~~~~~~~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG 72 (262)
|++++++||+++|+|||||||+|||||++|+++|+|+|||+++ ++.+++++.+++.+||++|+++++++++|
T Consensus 3 ~~~~~~~y~~~~~~fsp~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG 82 (241)
T PRK03996 3 MQPQQMGYDRAITIFSPDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAASAG 82 (241)
T ss_pred CCccccccCCCCceECCCCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEcc
Confidence 7889999999999999999999999999999999999999999 66667788788999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCce
Q 042723 73 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTF 152 (262)
Q Consensus 73 ~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~ 152 (262)
..+|++.++++++.++..|++.++++++++.+++++++.+|.|+++. +.|||++++||||+|++||+||.+||.|++
T Consensus 83 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~---~~rP~~~~~ilaG~d~~gp~Ly~id~~G~~ 159 (241)
T PRK03996 83 LVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHG---GVRPFGVALLIAGVDDGGPRLFETDPSGAY 159 (241)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCC---CccchheEEEEEEEeCCcCEEEEECCCCCe
Confidence 99999999999999999999999999999999999999999999998 899999999999999989999999999999
Q ss_pred eecCeEEECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC---eEEcCHhHHHHHHHhh
Q 042723 153 WQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSEVEAVINRP 229 (262)
Q Consensus 153 ~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii~k~---~~~~~~~ei~~~l~~~ 229 (262)
.+++++|+|.|+..++++||+.|+++|+++||++++++||+.+.+++.++++++|++|+++ ++.++++|++++++++
T Consensus 160 ~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~~~~ 239 (241)
T PRK03996 160 LEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEGKLDPENVEIAYIDVETKKFRKLSVEEIEKYLEKL 239 (241)
T ss_pred ecceEEEECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCcEEECCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999887778999999999987 9999999999999876
Q ss_pred h
Q 042723 230 M 230 (262)
Q Consensus 230 ~ 230 (262)
.
T Consensus 240 ~ 240 (241)
T PRK03996 240 L 240 (241)
T ss_pred h
Confidence 4
No 4
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=4.5e-54 Score=378.55 Aligned_cols=226 Identities=38% Similarity=0.627 Sum_probs=211.9
Q ss_pred cCCCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcC-CCccCceEEEcCcEEEEEecCHH
Q 042723 5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLE-PSSVEKIKEIDEHIGCAMSGLIA 75 (262)
Q Consensus 5 ~~~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~-~~~~~Ki~~I~~~i~~~~sG~~~ 75 (262)
.++||+++|+|||||||+|||||+||+++|+|+|||+++ ++.+.+++. +++.+||++|+++++++++|..+
T Consensus 2 ~~~yd~~~~~fsp~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~ 81 (253)
T PTZ00246 2 SRRYDSRTTTFSPEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTA 81 (253)
T ss_pred CCccCCCCceECCCCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHH
Confidence 347999999999999999999999999999999999999 666665554 45689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcC-CCCeEEEECCCCceee
Q 042723 76 DARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQ 154 (262)
Q Consensus 76 D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~-~gp~Ly~iD~~G~~~~ 154 (262)
|++.+.+.+|.++..|++.+++++|+..+++.+++.+|.|+++. +.|||+|++||||||+ .||+||.+||+|++.+
T Consensus 82 D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~---~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~ 158 (253)
T PTZ00246 82 DANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFG---GLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSG 158 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcccc---CcccCCEEEEEEEEeCCCCcEEEEECCCCCEec
Confidence 99999999999999999999999999999999999999999998 8999999999999995 6899999999999999
Q ss_pred cCeEEECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC-------eEEcCHhHHHHHH
Q 042723 155 CNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-------YHLYTPSEVEAVI 226 (262)
Q Consensus 155 ~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~-------~~~~~~~ei~~~l 226 (262)
++++|+|+|+.++.++||+.|+++|+++||++++++||+.+.+++. ++++++|++|+++ +++++++||++++
T Consensus 159 ~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l 238 (253)
T PTZ00246 159 WKATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELL 238 (253)
T ss_pred ceEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999886 7999999999863 8999999999999
Q ss_pred Hhhhhhh
Q 042723 227 NRPMSIR 233 (262)
Q Consensus 227 ~~~~~~~ 233 (262)
.++.+.-
T Consensus 239 ~~~~~~~ 245 (253)
T PTZ00246 239 KKVTQEY 245 (253)
T ss_pred HHHhhhh
Confidence 9987443
No 5
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.1e-53 Score=363.25 Aligned_cols=203 Identities=39% Similarity=0.607 Sum_probs=193.9
Q ss_pred cCCCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecCHHH
Q 042723 5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIAD 76 (262)
Q Consensus 5 ~~~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D 76 (262)
+++||+.+|+|||||||+|||||++|+++|+|+|||+++ ++.++.+...++.+||++|+++++++++|..+|
T Consensus 1 ~~~yd~~~t~fsp~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (212)
T cd03751 1 GTGYDLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLAD 80 (212)
T ss_pred CCCccCCCceECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHh
Confidence 368999999999999999999999999999999999999 666667777778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecC
Q 042723 77 ARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCN 156 (262)
Q Consensus 77 ~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~ 156 (262)
++.+.++++.+++.|++.+++++|++.++++|++++|.|+++. ++|||+|++||||+|++||+||.+||+|++.+++
T Consensus 81 ~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~---~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~~~~~ 157 (212)
T cd03751 81 GRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYS---SVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYF 157 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCC---CcCCceEEEEEEEEeCCcCEEEEECCCCCEEeeE
Confidence 9999999999999999999999999999999999999999998 8999999999999998899999999999999999
Q ss_pred eEEECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhcc-CCCCcEEEEEE
Q 042723 157 AKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEK-VTPNNVDIARV 210 (262)
Q Consensus 157 ~~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d-~s~~~iev~ii 210 (262)
++|+|+|+..++++||+.|+++||++||+++++++|+.+.+.+ .++.+|||.++
T Consensus 158 ~~a~G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 158 GCAIGKGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred EEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 9999999999999999999999999999999999999999865 68899999875
No 6
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=6.8e-53 Score=364.82 Aligned_cols=212 Identities=50% Similarity=0.859 Sum_probs=202.4
Q ss_pred CCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecCHHHHH
Q 042723 7 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIADAR 78 (262)
Q Consensus 7 ~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~ 78 (262)
+||+++|+|||||||+|||||++|+++|+|+|||+++ +|.+++++.+++.+||++|++++++++||..+|++
T Consensus 2 ~~~~~~~~f~p~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 81 (224)
T TIGR03633 2 GYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADAR 81 (224)
T ss_pred CCCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHhHH
Confidence 7999999999999999999999999999999999999 66667788788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecCeE
Q 042723 79 TLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAK 158 (262)
Q Consensus 79 ~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~~~ 158 (262)
.+.+.++.++..|++.++++++++.++++|++++|.|+++. +.|||+|++||||+|+.+|+||.+||.|++.+++++
T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~---~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~~~~~~~ 158 (224)
T TIGR03633 82 VLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHG---GVRPFGVALLIAGVDDGGPRLFETDPSGALLEYKAT 158 (224)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCC---CccccceEEEEEEEeCCcCEEEEECCCCCeecceEE
Confidence 99999999999999999999999999999999999999987 899999999999999889999999999999999999
Q ss_pred EECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC---eEEcCHhH
Q 042723 159 AIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSE 221 (262)
Q Consensus 159 a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii~k~---~~~~~~~e 221 (262)
|+|+|+.+++++||+.|+++|+++||++++++||+.+.++..++++++|++|+++ ++.++++|
T Consensus 159 a~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~ 224 (224)
T TIGR03633 159 AIGAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVEDKLTPENVEVAYITVEDKKFRKLSVEE 224 (224)
T ss_pred EECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence 9999999999999999999999999999999999999883358999999999986 88888775
No 7
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.8e-52 Score=357.08 Aligned_cols=202 Identities=53% Similarity=0.885 Sum_probs=195.5
Q ss_pred CCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecCHHHHH
Q 042723 7 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIADAR 78 (262)
Q Consensus 7 ~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~ 78 (262)
+||+++|+|||||||+|+|||+||+++|+|+|||+++ ++.+++++.+++.+||++|+++++++++|..+|++
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 80 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADAR 80 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 5999999999999999999999999999999999999 66667777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecCeE
Q 042723 79 TLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAK 158 (262)
Q Consensus 79 ~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~~~ 158 (262)
.+.+.++.+++.|+++++++++++.++++|++++|.|++++ +.|||++++||||+|++||+||.+||.|++.+++++
T Consensus 81 ~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~---~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~~~~~~~ 157 (211)
T cd03756 81 VLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHG---GVRPFGVALLIAGVDDGGPRLFETDPSGAYNEYKAT 157 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCC---CeechhEEEEEEEEeCCCCEEEEECCCCCeeeeEEE
Confidence 99999999999999999999999999999999999999987 899999999999999989999999999999999999
Q ss_pred EECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 042723 159 AIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA 211 (262)
Q Consensus 159 a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii~ 211 (262)
|+|+|+..++++||+.|+++|+++||++++++||+.+.+++.++++++|++|+
T Consensus 158 a~G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~~~~~~~v~ii~ 210 (211)
T cd03756 158 AIGSGRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEENETPENVEIAYVT 210 (211)
T ss_pred EECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEe
Confidence 99999999999999999999999999999999999999998899999999987
No 8
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.7e-52 Score=356.07 Aligned_cols=202 Identities=43% Similarity=0.709 Sum_probs=191.6
Q ss_pred CCCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcC-CCccCceEEEcCcEEEEEecCHHH
Q 042723 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLE-PSSVEKIKEIDEHIGCAMSGLIAD 76 (262)
Q Consensus 6 ~~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~-~~~~~Ki~~I~~~i~~~~sG~~~D 76 (262)
++||+.+|+|||||||+|+|||+||+++|+|+|||+++ ++.+++++. +++.+||++|+++++++++|..+|
T Consensus 1 ~~yd~~~~~fsp~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (213)
T cd03752 1 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSD 80 (213)
T ss_pred CCcCCCCceECCCCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHh
Confidence 47999999999999999999999999999999999999 666665554 458999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcC-CCCeEEEECCCCceeec
Q 042723 77 ARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQC 155 (262)
Q Consensus 77 ~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~-~gp~Ly~iD~~G~~~~~ 155 (262)
++.+.++++.++..|+++++++++++.+++.|+.++|.|++.. +.|||+|++||||||+ .||+||.+||+|++.++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~---~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~ 157 (213)
T cd03752 81 ANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYG---GLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGW 157 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCC---CcccceeEEEEEEEeCCCCCEEEEECCCCCeeee
Confidence 9999999999999999999999999999999999999999987 8999999999999996 58999999999999999
Q ss_pred CeEEECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEE
Q 042723 156 NAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARV 210 (262)
Q Consensus 156 ~~~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii 210 (262)
+++|+|+|+.+++++||+.|+++|+++||++++++||+.+.+|+. ++.++||.+|
T Consensus 158 ~~~a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 158 KATAIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred eEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 999999999999999999999999999999999999999999885 7899999875
No 9
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.1e-52 Score=354.45 Aligned_cols=198 Identities=41% Similarity=0.703 Sum_probs=189.5
Q ss_pred CCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecCHHHHHH
Q 042723 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIADART 79 (262)
Q Consensus 8 yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~ 79 (262)
||+++|+|||||||+|||||++|+++|+|+|||+++ ++....++.+++.+||++|+++++++++|..+|++.
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADARV 80 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHHH
Confidence 899999999999999999999999999999999999 555566777778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCC-CCeEEEECCCCceeecCeE
Q 042723 80 LVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAK 158 (262)
Q Consensus 80 l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~-gp~Ly~iD~~G~~~~~~~~ 158 (262)
+.++++.++..|++.++++++++.++++|++++|.|++++ +.|||+|++||||+|++ ||+||.+||+|++.+++++
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~---~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~ 157 (207)
T cd03755 81 LINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSG---GVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKAN 157 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccc---CcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEE
Confidence 9999999999999999999999999999999999999998 89999999999999975 8999999999999999999
Q ss_pred EECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 042723 159 AIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV 210 (262)
Q Consensus 159 a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii 210 (262)
|+|+|+.+++++||+.|+++|+.+||++++++||+.+.+ .++.++||+++
T Consensus 158 a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~--~~~~~~e~~~~ 207 (207)
T cd03755 158 AIGRNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ--SGSKNIELAVM 207 (207)
T ss_pred EECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC--CCCCeEEEEEC
Confidence 999999999999999999999999999999999999987 68899999875
No 10
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-51 Score=353.61 Aligned_cols=199 Identities=44% Similarity=0.681 Sum_probs=188.8
Q ss_pred CCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecCHHHHHH
Q 042723 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIADART 79 (262)
Q Consensus 8 yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~ 79 (262)
||+++|+|||||||+|||||++|+++|+|+|||+++ +|.+..+ .++.+||++|++++++++||..+|++.
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~~D~~~ 78 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSEL--SSYQKKIFKVDDHIGIAIAGLTADARV 78 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCcccc--CCccccEEEeCCCEEEEEEeChHhHHH
Confidence 899999999999999999999999999999999999 5555554 346699999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecCeEE
Q 042723 80 LVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKA 159 (262)
Q Consensus 80 l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~~~a 159 (262)
+.++++.++..|+++++++++++.+++.+++++|.|+++. +.|||+|++||||||++||+||++||+|++.+++++|
T Consensus 79 l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~---~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~~~~~~~a 155 (211)
T cd03749 79 LSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRY---GRRPYGVGLLIAGYDESGPHLFQTCPSGNYFEYKATS 155 (211)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccc---CCCCceEEEEEEEEcCCCCeEEEECCCcCEeeeeEEE
Confidence 9999999999999999999999999999999999999987 8999999999999998899999999999999999999
Q ss_pred ECCChhhHHHHHHhhcC--CCCCHHHHHHHHHHHHHHHhhcc--CCCCcEEEEEEe
Q 042723 160 IGSGSEGADSSLQEQYN--KDLTLQEAETIALSILKQVMEEK--VTPNNVDIARVA 211 (262)
Q Consensus 160 ~G~gs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~d--~s~~~iev~ii~ 211 (262)
+|+|++.++++||+.|+ ++|+++||+++++++|+.+.++| +++.+|||++|+
T Consensus 156 ~G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 156 IGARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred ECCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 99999999999999999 59999999999999999999876 789999999984
No 11
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.8e-51 Score=352.68 Aligned_cols=201 Identities=36% Similarity=0.672 Sum_probs=191.0
Q ss_pred CCCCCccccCCCCCchhhhhHHHHhcc-CCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecCHHHH
Q 042723 7 EYDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIADA 77 (262)
Q Consensus 7 ~yd~~~~~fsp~G~~~QieyA~kav~~-G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~ 77 (262)
+||+++|+|||||||+|||||+||+++ |+|+|||+++ +|.+.+++..++.+||++|+++++++++|..+|+
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~ 80 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADS 80 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhH
Confidence 599999999999999999999999986 7799999999 6666677666788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcC-CCCeEEEECCCCceeecC
Q 042723 78 RTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCN 156 (262)
Q Consensus 78 ~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~-~gp~Ly~iD~~G~~~~~~ 156 (262)
+.+.+++|.++..|+++++++++++.+|+.|++++|.|+++. +.|||++++||||+|+ +||+||++||+|++.+++
T Consensus 81 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~---~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~ 157 (215)
T cd03754 81 RSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHA---YMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYK 157 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCC---CCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEE
Confidence 999999999999999999999999999999999999999998 8999999999999996 589999999999999999
Q ss_pred eEEECCChhhHHHHHHhhcCCC--C--CHHHHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 042723 157 AKAIGSGSEGADSSLQEQYNKD--L--TLQEAETIALSILKQVMEEKVTPNNVDIARV 210 (262)
Q Consensus 157 ~~a~G~gs~~a~~~Le~~~~~~--m--s~eea~~la~~al~~~~~~d~s~~~iev~ii 210 (262)
++|+|+|+..++++||+.|+++ | ++|||++++++||..+.+||++++++||.+|
T Consensus 158 ~~a~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~~~~~ei~~~ 215 (215)
T cd03754 158 ATAAGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFKATEIEVGVV 215 (215)
T ss_pred EEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 9999999999999999999995 7 9999999999999999999999999999875
No 12
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.8e-51 Score=349.79 Aligned_cols=203 Identities=81% Similarity=1.211 Sum_probs=191.8
Q ss_pred CCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecCHHHHHH
Q 042723 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIADART 79 (262)
Q Consensus 8 yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~ 79 (262)
||+++|+||||||++|+|||++++++|+|+|||+++ ++.+++++.+++.+||++|+++++++++|..+|++.
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADART 80 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHHH
Confidence 899999999999999999999999999999999999 666667777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCC-cc-CCCccceEEEEEEEEcCCCCeEEEECCCCceeecCe
Q 042723 80 LVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGD-EE-SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNA 157 (262)
Q Consensus 80 l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~-~~-~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~~ 157 (262)
+.+.++.+++.|+++++++++++.++++|++++|.|+++. .+ +.+|||+|++||||+|+.||+||.+||.|++.++++
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~~~~~~ 160 (213)
T cd03753 81 LIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCDA 160 (213)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCeecccE
Confidence 9999999999999999999999999999999999998763 01 246999999999999998999999999999999999
Q ss_pred EEECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 042723 158 KAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV 210 (262)
Q Consensus 158 ~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii 210 (262)
+|+|++++.+.++|++.|+++|+++||++++++||+.+.+++++++++||++|
T Consensus 161 ~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~~~~~~~ei~~~ 213 (213)
T cd03753 161 KAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEEKLNSTNVELATV 213 (213)
T ss_pred EEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 99999999999999999999999999999999999999888889999999975
No 13
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=8.2e-51 Score=348.29 Aligned_cols=200 Identities=60% Similarity=0.932 Sum_probs=192.4
Q ss_pred CCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecCHHHHHH
Q 042723 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIADART 79 (262)
Q Consensus 8 yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~ 79 (262)
||+++|+|||||||+|+|||++++++|+|+|||+++ ++.+.+++..++.+||++|+++++++++|..+|++.
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 80 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADARV 80 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHHH
Confidence 899999999999999999999999999999999999 666666777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCC-CCeEEEECCCCceeecCeE
Q 042723 80 LVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAK 158 (262)
Q Consensus 80 l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~-gp~Ly~iD~~G~~~~~~~~ 158 (262)
+.+.++.++..|+..++++++++.+++++++++|.|+++. ++|||+|++||||+|++ ||+||.+||.|++.+++++
T Consensus 81 l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~---~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~ 157 (209)
T cd01911 81 LVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYG---GVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKAT 157 (209)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccc---CccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEE
Confidence 9999999999999999999999999999999999999988 89999999999999976 8999999999999999999
Q ss_pred EECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 042723 159 AIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV 210 (262)
Q Consensus 159 a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii 210 (262)
++|+|+.++.++||+.|+++|+.+||++++++||+.+.+||.++++++|+++
T Consensus 158 a~G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~~~~~~~i~i~ 209 (209)
T cd01911 158 AIGKGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDKKAKNIEIAVV 209 (209)
T ss_pred EeCCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 9999999999999999999999999999999999999999988899999875
No 14
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-50 Score=347.44 Aligned_cols=222 Identities=44% Similarity=0.745 Sum_probs=208.7
Q ss_pred CCCCCCccccCCCCCchhhhhHHHHhccC-CcEEEEeec--------cccCCC-CcCCCccCceEEEcCcEEEEEecCHH
Q 042723 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLG-STAIGLKTK--------KRITSP-LLEPSSVEKIKEIDEHIGCAMSGLIA 75 (262)
Q Consensus 6 ~~yd~~~~~fsp~G~~~QieyA~kav~~G-~tiVgI~~~--------~~~~~~-l~~~~~~~Ki~~I~~~i~~~~sG~~~ 75 (262)
.+||+.+++|||+|+++|+|||.+++..| +|+|||+++ +|.+++ ++..++.+||++|+|||+++++|..+
T Consensus 1 ~~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~a 80 (236)
T COG0638 1 AGYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAA 80 (236)
T ss_pred CCCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcH
Confidence 36999999999999999999999999997 999999999 777765 56667799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeec
Q 042723 76 DARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQC 155 (262)
Q Consensus 76 D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~ 155 (262)
|++.++++++.+++.|++.++++++++.+++++++++|.|+++ +|||+|++||||+|+++|+||++||+|++.++
T Consensus 81 Da~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~-----~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~~~~ 155 (236)
T COG0638 81 DAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS-----GRPYGVSLLVAGVDDGGPRLYSTDPSGSYNEY 155 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC-----cccceEEEEEEEEcCCCCeEEEECCCCceeec
Confidence 9999999999999999999999999999999999999988763 48999999999999977999999999999999
Q ss_pred CeEEECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC--eEEcCHhHHHHHHHhhhhh
Q 042723 156 NAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT--YHLYTPSEVEAVINRPMSI 232 (262)
Q Consensus 156 ~~~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~--~~~~~~~ei~~~l~~~~~~ 232 (262)
+++|+|+|++.+.++||+.|+++|++|||++++++||+.+.+||. ++++++|++|+++ ++.++.+++..++..+..+
T Consensus 156 ~~~a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~ 235 (236)
T COG0638 156 KATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIKKLLDDLSEK 235 (236)
T ss_pred CEEEEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999997 8899999999994 9999999999999887643
No 15
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-51 Score=337.35 Aligned_cols=222 Identities=38% Similarity=0.642 Sum_probs=211.5
Q ss_pred CCCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecCHHHH
Q 042723 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIADA 77 (262)
Q Consensus 6 ~~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~ 77 (262)
+.||+.+|+|||||+|+|||||++|+.+|+|+||++++ ++...+|...+...||..+++|++++++|+.+|+
T Consensus 2 srydraltvFSPDGhL~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aDA 81 (249)
T KOG0183|consen 2 SRYDRALTVFSPDGHLFQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTADA 81 (249)
T ss_pred CccccceEEECCCCCEEeeHhHHHHHhcCceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCccc
Confidence 46999999999999999999999999999999999999 5556788888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCC-CeEEEECCCCceeecC
Q 042723 78 RTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCN 156 (262)
Q Consensus 78 ~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~g-p~Ly~iD~~G~~~~~~ 156 (262)
+.+++..|.+|+.|+++.+.|++++.++++|+.+.|.||+.. +.||||++.||+|+|++| |+||++||+|.+.+|+
T Consensus 82 rilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~---grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewk 158 (249)
T KOG0183|consen 82 RILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSN---GRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWK 158 (249)
T ss_pred eeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccC---CcccccceEEEEeeCCCCCeeeEeeCCCcchhhhh
Confidence 999999999999999999999999999999999999999999 999999999999999987 9999999999999999
Q ss_pred eEEECCChhhHHHHHHhhcCCC--CCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC--eEEcCHhHHHHHHHhhhhh
Q 042723 157 AKAIGSGSEGADSSLQEQYNKD--LTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVINRPMSI 232 (262)
Q Consensus 157 ~~a~G~gs~~a~~~Le~~~~~~--ms~eea~~la~~al~~~~~~d~s~~~iev~ii~k~--~~~~~~~ei~~~l~~~~~~ 232 (262)
+.|+|.+++.++.+|||.|.+. .+..++++|++++|.++... .+.++|+.++++. ++.++.++|+.++..++.+
T Consensus 159 a~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs--~~~nie~aVm~~~~~~~~l~~~~I~~~v~~ie~E 236 (249)
T KOG0183|consen 159 ANAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQS--GGKNIEVAVMKRRKDLKMLESEEIDDIVKEIEQE 236 (249)
T ss_pred ccccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhc--CCCeeEEEEEecCCceeecCHHHHHHHHHHHHHH
Confidence 9999999999999999999986 78899999999999998764 6789999999988 9999999999999999865
No 16
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-49 Score=324.74 Aligned_cols=223 Identities=37% Similarity=0.635 Sum_probs=214.7
Q ss_pred CcCCCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecCHH
Q 042723 4 TRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIA 75 (262)
Q Consensus 4 ~~~~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~ 75 (262)
...+|.+++|+|||+||+-|||||+.|+.+|.+.|||+-. ++..+.+.+..+++|+++|.++|+|..||..+
T Consensus 2 ~d~~y~fslTtFSpsGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmgp 81 (233)
T KOG0181|consen 2 GDFGYSFSLTTFSPSGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMGP 81 (233)
T ss_pred CCcccceeeEEEcCCCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCCC
Confidence 3457999999999999999999999999999999999988 55667888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeec
Q 042723 76 DARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQC 155 (262)
Q Consensus 76 D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~ 155 (262)
|++.+++..|+.++.|...|++++|+..|+..++..+|+|||.+ +.||||++++|||||+.+|.||++||+|++..|
T Consensus 82 D~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsg---GvrPFGvslliaG~~~~~p~LyQvdPSGsyf~w 158 (233)
T KOG0181|consen 82 DYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSG---GVRPFGVSLLIAGWDEGGPLLYQVDPSGSYFAW 158 (233)
T ss_pred ceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC---CccccceEEEEeecCCCceeEEEECCccceeeh
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred CeEEECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC-eEEcCHhHHHHHHHhh
Q 042723 156 NAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT-YHLYTPSEVEAVINRP 229 (262)
Q Consensus 156 ~~~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii~k~-~~~~~~~ei~~~l~~~ 229 (262)
+++|+|.+...++++||++|+++|.+++++..|+..|++..+-..++++|||+++..+ |+++++.||+++|..+
T Consensus 159 katA~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~fege~~~~nieigv~~~~~F~~lt~~eI~d~l~~l 233 (233)
T KOG0181|consen 159 KATAMGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEGEMTAKNIEIGVCGENGFRRLTPAEIEDYLASL 233 (233)
T ss_pred hhhhhccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhccccccCceEEEEecCCceeecCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999899999999999988 9999999999998754
No 17
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-49 Score=324.93 Aligned_cols=222 Identities=36% Similarity=0.558 Sum_probs=208.1
Q ss_pred CCCCcCCCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEec
Q 042723 1 MFFTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSG 72 (262)
Q Consensus 1 ~~~~~~~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG 72 (262)
||+++.+||++.++||||||++|+|||+||+.+|+|+||||++ |..+++|..+...+||+.|++||+|+.+|
T Consensus 1 MSsIGtGyDls~s~fSpdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaG 80 (254)
T KOG0184|consen 1 MSSIGTGYDLSASTFSPDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAG 80 (254)
T ss_pred CCcccccccccceeeCCCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEec
Confidence 9999999999999999999999999999999999999999999 67789999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCce
Q 042723 73 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTF 152 (262)
Q Consensus 73 ~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~ 152 (262)
+.+|.+.+.+.+|.++..|+-+|+.++|...++++++++.|.||.++ ..||||++.++++||.+||+||++||+|..
T Consensus 81 l~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~---~vRpfG~~~~~~~yd~~g~~LymiepSG~~ 157 (254)
T KOG0184|consen 81 LIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYS---SVRPFGASTILGSYDDEGPQLYMIEPSGSS 157 (254)
T ss_pred cccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhh---ccccccceEEEEEEeCCCceEEEEcCCCCc
Confidence 99999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred eecCeEEECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC----eEEcCHhHHHHHH
Q 042723 153 WQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT----YHLYTPSEVEAVI 226 (262)
Q Consensus 153 ~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~----~~~~~~~ei~~~l 226 (262)
+.++++|+|.|.+.|++.|||+--++|+.+|+++.+.+.|+.+-+..- +...+||.|+..+ .++++. |+-+..
T Consensus 158 ~~Y~~aaiGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~-el~~ea 235 (254)
T KOG0184|consen 158 YGYKGAAIGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPS-ELLEEA 235 (254)
T ss_pred cceeeeeccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcH-HHHHHH
Confidence 999999999999999999999999999999999999999999876543 6788999999876 455555 544443
No 18
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-48 Score=322.70 Aligned_cols=223 Identities=39% Similarity=0.618 Sum_probs=208.3
Q ss_pred CCcCCCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecCH
Q 042723 3 FTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGLI 74 (262)
Q Consensus 3 ~~~~~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~ 74 (262)
+++..||.++|+|||+||++|||||++|++.|+++||+|.+ ++..+.+ ++..+||++|++|++++++|+.
T Consensus 1 Mfrnqyd~d~t~wsPqGrl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~seL--ss~QkKi~~iD~h~g~siAGLt 78 (264)
T KOG0863|consen 1 MFRNQYDNDVTTWSPQGRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSEL--SSHQKKIFKIDDHIGISIAGLT 78 (264)
T ss_pred CCcccccCceeEECCcceehHHHHHHHHHhcccceEeecccceEEEeeeccchhHH--HHhhheeEecccccceEEeccC
Confidence 45788999999999999999999999999999999999999 4454555 4456899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceee
Q 042723 75 ADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQ 154 (262)
Q Consensus 75 ~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~ 154 (262)
+|++.|.++++.++..+++.+++++|+..|...|.+.+|..||+. +.|||||.++++|||+.|||||+++|+|++.+
T Consensus 79 ~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~y---grRpYGVGllv~gYDe~G~hl~e~~Psg~v~e 155 (264)
T KOG0863|consen 79 ADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRY---GRRPYGVGLLVAGYDESGPHLYEFCPSGNVFE 155 (264)
T ss_pred cchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhh---CCccccceEEEEeecCCCceeEEEcCCccEEE
Confidence 999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cCeEEECCChhhHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHhhc--cCCCCcEEEEEEeCC--eEEcCHhHHHHHHHh
Q 042723 155 CNAKAIGSGSEGADSSLQEQYNK--DLTLQEAETIALSILKQVMEE--KVTPNNVDIARVAPT--YHLYTPSEVEAVINR 228 (262)
Q Consensus 155 ~~~~a~G~gs~~a~~~Le~~~~~--~ms~eea~~la~~al~~~~~~--d~s~~~iev~ii~k~--~~~~~~~ei~~~l~~ 228 (262)
+++.++|+.++.++++||++..+ +++.||.+..++.||+..... ++++.+++|.|+.++ |++++.+++..++..
T Consensus 156 ~~g~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~~~d~~~~~k~~~~ 235 (264)
T KOG0863|consen 156 CKGMSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFTILDQKDVAKYVDL 235 (264)
T ss_pred EeeeecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceEeecHHHHHHHHHH
Confidence 99999999999999999999974 899999999999999998853 478999999999999 999999999988654
Q ss_pred hh
Q 042723 229 PM 230 (262)
Q Consensus 229 ~~ 230 (262)
..
T Consensus 236 ~~ 237 (264)
T KOG0863|consen 236 FK 237 (264)
T ss_pred hh
Confidence 44
No 19
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-47 Score=316.04 Aligned_cols=226 Identities=34% Similarity=0.613 Sum_probs=216.9
Q ss_pred CCcCCCCCCccccCCCCCchhhhhHHHHhcc-CCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecC
Q 042723 3 FTRTEYDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGL 73 (262)
Q Consensus 3 ~~~~~yd~~~~~fsp~G~~~QieyA~kav~~-G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~ 73 (262)
++-.+||+-+|+|||||||+|||||.||+++ |-|+||++++ ++...+++.++.+..+|+|+.+|+|+++|.
T Consensus 4 gs~agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~tG~ 83 (246)
T KOG0182|consen 4 GSSAGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVITGM 83 (246)
T ss_pred CCcCCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEEecC
Confidence 3567899999999999999999999999999 7799999999 677889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCC-CCeEEEECCCCce
Q 042723 74 IADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTF 152 (262)
Q Consensus 74 ~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~-gp~Ly~iD~~G~~ 152 (262)
.+|++..+.++|.++.++++.||.+||++.|+++++++.|.|+|+. .|||+||.+++.|+|++ ||.+|.+||.|-+
T Consensus 84 ~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a---~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy 160 (246)
T KOG0182|consen 84 IADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNA---AMRPLGVAATLIGVDEERGPSVYKTDPAGYY 160 (246)
T ss_pred CcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhh---hhcccceeEEEEEeccccCcceEeecCcccc
Confidence 9999999999999999999999999999999999999999999998 99999999999999986 8999999999999
Q ss_pred eecCeEEECCChhhHHHHHHhhcCCC--CCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC---eEEcCHhHHHHHHH
Q 042723 153 WQCNAKAIGSGSEGADSSLQEQYNKD--LTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSEVEAVIN 227 (262)
Q Consensus 153 ~~~~~~a~G~gs~~a~~~Le~~~~~~--ms~eea~~la~~al~~~~~~d~s~~~iev~ii~k~---~~~~~~~ei~~~l~ 227 (262)
..++++|.|.....+.++||++++++ ++.+|++++++.||..++.-|.....+||++++++ |++++.+||++.|.
T Consensus 161 ~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~se~EVgvv~~~~p~f~~Ls~~eie~hL~ 240 (246)
T KOG0182|consen 161 YGFKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFKSSELEVGVVTVDNPEFRILSAEEIEEHLQ 240 (246)
T ss_pred ccceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccCCcceEEEEEEcCCcceeeccHHHHHHHHH
Confidence 99999999999999999999999987 77999999999999999999999999999999988 99999999999999
Q ss_pred hhhh
Q 042723 228 RPMS 231 (262)
Q Consensus 228 ~~~~ 231 (262)
.|.+
T Consensus 241 ~IAE 244 (246)
T KOG0182|consen 241 AIAE 244 (246)
T ss_pred Hhhh
Confidence 8865
No 20
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-47 Score=311.07 Aligned_cols=227 Identities=37% Similarity=0.635 Sum_probs=212.4
Q ss_pred CCCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcC-CCccCceEEEcCcEEEEEecCHHH
Q 042723 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLE-PSSVEKIKEIDEHIGCAMSGLIAD 76 (262)
Q Consensus 6 ~~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~-~~~~~Ki~~I~~~i~~~~sG~~~D 76 (262)
..||...|+||||||++|||||++++.+.+|+|||..+ ++.+++++. +...+||++|+|+++|+.+|+.+|
T Consensus 3 r~ydsrttiFspEGRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~D 82 (249)
T KOG0178|consen 3 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSD 82 (249)
T ss_pred cCcCCcccccCCCcchHHHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEeccccc
Confidence 45999999999999999999999999999999999999 567777764 456799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCC-CCeEEEECCCCceeec
Q 042723 77 ARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQC 155 (262)
Q Consensus 77 ~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~-gp~Ly~iD~~G~~~~~ 155 (262)
+..|++++|..++.|.++|++++|.+.|+..|+++.|.|||++ +.||||||+|-+|||.. |.+||+-||+|++..|
T Consensus 83 AnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQyg---G~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gW 159 (249)
T KOG0178|consen 83 ANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYG---GKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGW 159 (249)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhcc---CcCCCceeeeeeceecCcceEEEecCCCCCcccc
Confidence 9999999999999999999999999999999999999999999 99999999999999985 8999999999999999
Q ss_pred CeEEECCChhhHHHHHHhhcCCCC-CHHHHHHHHHHHHHHHhhcc-CCCCcEEEEEEeCC-----eEEcCHhHHHHHHHh
Q 042723 156 NAKAIGSGSEGADSSLQEQYNKDL-TLQEAETIALSILKQVMEEK-VTPNNVDIARVAPT-----YHLYTPSEVEAVINR 228 (262)
Q Consensus 156 ~~~a~G~gs~~a~~~Le~~~~~~m-s~eea~~la~~al~~~~~~d-~s~~~iev~ii~k~-----~~~~~~~ei~~~l~~ 228 (262)
++.++|.++..+++.|++-|+++. +++||..+|++.|...++.. ++...+|+..|+++ +++..++||..++++
T Consensus 160 ka~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~k 239 (249)
T KOG0178|consen 160 KATCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLKLLEK 239 (249)
T ss_pred ceeeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHHHHHH
Confidence 999999999999999999999875 59999999999999999887 58899999999987 789999999999999
Q ss_pred hhhhhhh
Q 042723 229 PMSIRRK 235 (262)
Q Consensus 229 ~~~~~~~ 235 (262)
++...+.
T Consensus 240 ~~~~~~~ 246 (249)
T KOG0178|consen 240 YHETQRQ 246 (249)
T ss_pred hhhhhhh
Confidence 9854443
No 21
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=9.5e-41 Score=287.99 Aligned_cols=197 Identities=23% Similarity=0.293 Sum_probs=181.4
Q ss_pred cCCcEEEEeec--------cccCC-CCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 042723 33 LGSTAIGLKTK--------KRITS-PLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVES 103 (262)
Q Consensus 33 ~G~tiVgI~~~--------~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~ 103 (262)
+|+|+|||+++ ++.+. +++.+++.+||++|+++++++++|..+|++.+.+++|.+++.|+++++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 48999999999 66664 7888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcC--CCCeEEEECCCCc-eeecCeEEECCChhhHHHHHHhhcCCCCC
Q 042723 104 TTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE--NGPSLYYTDPSGT-FWQCNAKAIGSGSEGADSSLQEQYNKDLT 180 (262)
Q Consensus 104 la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~--~gp~Ly~iD~~G~-~~~~~~~a~G~gs~~a~~~Le~~~~~~ms 180 (262)
++++|++++|.++.. .+|||+|++||||||+ .+|+||++||+|+ +..++++|+|+|+++++++||+.|+++||
T Consensus 81 la~~ls~~~~~~~~~----~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms 156 (219)
T TIGR03690 81 KANRLAAMVRGNLPA----AMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLD 156 (219)
T ss_pred HHHHHHHHHHhhhhh----ccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcC
Confidence 999999999887643 6899999999999996 4699999999995 67779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccC-CCCc-------EEEEEEeCC-eEEcCHhHHHHHHHhhhhhh
Q 042723 181 LQEAETIALSILKQVMEEKV-TPNN-------VDIARVAPT-YHLYTPSEVEAVINRPMSIR 233 (262)
Q Consensus 181 ~eea~~la~~al~~~~~~d~-s~~~-------iev~ii~k~-~~~~~~~ei~~~l~~~~~~~ 233 (262)
.+||++++++||..+.++|. +++. +||++|+++ +++++++||+++++++..+|
T Consensus 157 ~eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~l~~~ei~~~~~~~~~~~ 218 (219)
T TIGR03690 157 EDDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARRVPESELEELARAIVESR 218 (219)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEEcCHHHHHHHHHHHHhcc
Confidence 99999999999999999996 5443 399999988 99999999999999988766
No 22
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=1.3e-40 Score=291.45 Aligned_cols=199 Identities=20% Similarity=0.320 Sum_probs=184.1
Q ss_pred HhccCCcEEEEeec--------cccC-CCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 042723 30 AIKLGSTAIGLKTK--------KRIT-SPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMT 100 (262)
Q Consensus 30 av~~G~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 100 (262)
.+++|+|+|||+++ ++.+ +.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+++++++++
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 56789999999999 5565 57888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCCCCC
Q 042723 101 VESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLT 180 (262)
Q Consensus 101 ~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms 180 (262)
++.++++|+++++.+ |. .|+.+++||||||++||+||++||+|++.+++++|+|+|+.+++++||+.|+++||
T Consensus 115 v~~la~~ls~~l~~~--R~-----~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms 187 (247)
T PTZ00488 115 VAAASKILANIVWNY--KG-----MGLSMGTMICGWDKKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLN 187 (247)
T ss_pred HHHHHHHHHHHHHhc--CC-----CCeeEEEEEEEEeCCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCC
Confidence 999999999999544 32 35666689999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEEcCHhHHHHHHHhhhhhhhh
Q 042723 181 LQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTPSEVEAVINRPMSIRRK 235 (262)
Q Consensus 181 ~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~~~~~ei~~~l~~~~~~~~~ 235 (262)
.+||++++++||+.+.+||. ++++++|++|+++ ++.++++||+++++.+....+.
T Consensus 188 ~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l~~~ei~~~l~~~~~~~~~ 244 (247)
T PTZ00488 188 DEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKKISADDCFDLHQKYAAEKEI 244 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCccEECCHHHHHHHHHHHhhhccc
Confidence 99999999999999999996 8999999999999 9999999999999988865543
No 23
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=5.9e-40 Score=284.16 Aligned_cols=205 Identities=20% Similarity=0.289 Sum_probs=177.6
Q ss_pred CCCCCchh-hhhHHHHhccCCcEEEEeec---cccCCCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHH
Q 042723 16 SPEGRLFQ-VEYAIEAIKLGSTAIGLKTK---KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNH 91 (262)
Q Consensus 16 sp~G~~~Q-ieyA~kav~~G~tiVgI~~~---~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~ 91 (262)
+|+.-+.| -|||++|+++|+|+|||+++ ..+..+- +++.+||++|+|+++++++|..+|++.+++..+.++..|
T Consensus 8 ~~~~~~~~~~EYA~kav~~g~T~VGIk~kdgVVLaaek~--~~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~ 85 (228)
T TIGR03691 8 SPEQIMRDRAELARKGIARGRSVVVLTYADGILFVAENP--SRSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMR 85 (228)
T ss_pred CHHHHHhhHHHHHHHHHHcCCcEEEEEeCCeEEEEEecC--CCCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 34433333 58999999999999999999 1111111 356799999999999999999999999999999999999
Q ss_pred HHHhC-CCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcC--CCCeEEEECCCCceeecC-eEEECCChhhH
Q 042723 92 RFSYG-EPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE--NGPSLYYTDPSGTFWQCN-AKAIGSGSEGA 167 (262)
Q Consensus 92 ~~~~~-~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~--~gp~Ly~iD~~G~~~~~~-~~a~G~gs~~a 167 (262)
++.++ .+++++.+++.+++.+..+. ++ +.|||+|++||||||+ .||+||.+||+|++.+++ ++|+|+|++.+
T Consensus 86 ~~~~~~~~~~v~~la~~~tq~~~~~~-~~---~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a 161 (228)
T TIGR03691 86 GYSYDRRDVTGRGLANAYAQTLGTIF-TE---QQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPI 161 (228)
T ss_pred hhhcCCCCccHHHHHHHHHhhccccc-cc---ccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHH
Confidence 99998 68999999988777775555 33 6799999999999985 589999999999999976 89999999999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHhh--cc-CCCCcEEEEEEeCC-----eEEcCHhHHHHHH
Q 042723 168 DSSLQEQYNKDLTLQEAETIALSILKQVME--EK-VTPNNVDIARVAPT-----YHLYTPSEVEAVI 226 (262)
Q Consensus 168 ~~~Le~~~~~~ms~eea~~la~~al~~~~~--~d-~s~~~iev~ii~k~-----~~~~~~~ei~~~l 226 (262)
.++||++|+++||++||++++++||+.+.+ ++ +++.++||++|+++ |++++++||++++
T Consensus 162 ~~~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 162 ATALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALERLL 228 (228)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHhhC
Confidence 999999999999999999999999999964 44 58999999999952 9999999999874
No 24
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.9e-40 Score=278.69 Aligned_cols=181 Identities=23% Similarity=0.262 Sum_probs=169.3
Q ss_pred cCCcEEEEeec--------cccC-CCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHH-HHHHHhCCCCCHH
Q 042723 33 LGSTAIGLKTK--------KRIT-SPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQ-NHRFSYGEPMTVE 102 (262)
Q Consensus 33 ~G~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~~~~~~~~i~~~ 102 (262)
.|+|+|||+++ +|.+ +.++.+++.+||++|+++++++++|..+|++.+++++|.++. .+++.++++++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 58999999999 6666 688888899999999999999999999999999999999986 5668899999999
Q ss_pred HHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcC-CCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCC--CC
Q 042723 103 STTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK--DL 179 (262)
Q Consensus 103 ~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~-~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~--~m 179 (262)
.++++|++++ |+++. ++|||+|++||||||+ .||+||++||+|++.+++++|+|+|+.+++++||+.|++ +|
T Consensus 81 ~la~~i~~~~--y~~~~---~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~m 155 (197)
T cd03760 81 EIHSYLTRVL--YNRRS---KMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDL 155 (197)
T ss_pred HHHHHHHHHH--HHHhh---cCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCC
Confidence 9999999997 88887 8899999999999997 689999999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEEcC
Q 042723 180 TLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYT 218 (262)
Q Consensus 180 s~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~~~ 218 (262)
|+|||++++++||+.+.+||. ++++++|++|+++ +++..
T Consensus 156 s~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~ 196 (197)
T cd03760 156 TEEEARALIEECMKVLYYRDARSINKYQIAVVTKEGVEIEG 196 (197)
T ss_pred CHHHHHHHHHHHHHHHHHhccccCCceEEEEECCCCEEeCC
Confidence 999999999999999999995 8999999999999 76654
No 25
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2e-39 Score=273.54 Aligned_cols=176 Identities=23% Similarity=0.360 Sum_probs=165.7
Q ss_pred CcEEEEeec--------cccCC-CCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 042723 35 STAIGLKTK--------KRITS-PLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 105 (262)
Q Consensus 35 ~tiVgI~~~--------~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 105 (262)
+|+|||+++ ++.+. .++.+++.+||++|+++++++++|..+|++.+++++|.+++.|+++++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999 66665 667778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCCCCCHHHHH
Q 042723 106 QALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAE 185 (262)
Q Consensus 106 ~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~ 185 (262)
++|++++|.+++ .||+|++||||||++||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.|||+
T Consensus 81 ~~ls~~l~~~~~-------~~~~v~~li~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~ 153 (188)
T cd03761 81 KLLSNMLYQYKG-------MGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAY 153 (188)
T ss_pred HHHHHHHHhcCC-------CCeEEEEEEEEEeCCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHH
Confidence 999999987743 4899999999999889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEEc
Q 042723 186 TIALSILKQVMEEKV-TPNNVDIARVAPT-YHLY 217 (262)
Q Consensus 186 ~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~~ 217 (262)
+++++||+.+.+||. ++++++|++|+++ ++.+
T Consensus 154 ~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~ 187 (188)
T cd03761 154 DLARRAIYHATHRDAYSGGNVNLYHVREDGWRKI 187 (188)
T ss_pred HHHHHHHHHHHHhcccCCCCeEEEEEcCCceEEc
Confidence 999999999999986 8999999999998 7665
No 26
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.8e-39 Score=273.79 Aligned_cols=178 Identities=26% Similarity=0.304 Sum_probs=167.2
Q ss_pred CcEEEEeec--------cccC-CCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 042723 35 STAIGLKTK--------KRIT-SPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 105 (262)
Q Consensus 35 ~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 105 (262)
+|+|||+++ +|.+ +.++.+++.+||++|+++++++++|..+|++.+.++++.++..|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 789999999 6665 4668888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCccceEEEEEEEEcC-CCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCCCCCHHHH
Q 042723 106 QALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEA 184 (262)
Q Consensus 106 ~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~-~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea 184 (262)
++|++++|.|+++ + |||++++||||||+ .||+||++||+|++.+++++|+|+|+++++++||+.|+++||.|||
T Consensus 82 ~~l~~~~~~~~~~----~-rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eea 156 (193)
T cd03758 82 NFTRRELAESLRS----R-TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEA 156 (193)
T ss_pred HHHHHHHHHHhhc----C-CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHH
Confidence 9999999888654 4 89999999999997 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEEc
Q 042723 185 ETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLY 217 (262)
Q Consensus 185 ~~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~~ 217 (262)
++++++||+.+.+||. ++++++|.+|+++ ++.+
T Consensus 157 i~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~ 191 (193)
T cd03758 157 LELMKKCIKELKKRFIINLPNFTVKVVDKDGIRDL 191 (193)
T ss_pred HHHHHHHHHHHHHhccccCCceEEEEEcCCCeEeC
Confidence 9999999999999986 8999999999999 7654
No 27
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.1e-39 Score=273.89 Aligned_cols=174 Identities=16% Similarity=0.198 Sum_probs=162.3
Q ss_pred cCCcEEEEeec--------cccCCCCcC-CCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 042723 33 LGSTAIGLKTK--------KRITSPLLE-PSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVES 103 (262)
Q Consensus 33 ~G~tiVgI~~~--------~~~~~~l~~-~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~ 103 (262)
+|+|+|||+++ ++.+.++.. +++.+||++|+++++++++|..+|++.+.+.++.++..|+++++++++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 69999999999 666666544 567899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCC-CCeEEEECCCCceeecC-eEEECCChhhHHHHHHhhcCCCCCH
Q 042723 104 TTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCN-AKAIGSGSEGADSSLQEQYNKDLTL 181 (262)
Q Consensus 104 la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~-gp~Ly~iD~~G~~~~~~-~~a~G~gs~~a~~~Le~~~~~~ms~ 181 (262)
++++|++++ |++|. +||+|++||||||++ ||+||++||+|++..++ ++|+|+|++.+.++||+.|+++|+.
T Consensus 82 la~~l~~~l--y~~r~-----~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 154 (195)
T cd03759 82 FSSLISSLL--YEKRF-----GPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEP 154 (195)
T ss_pred HHHHHHHHH--HHhcC-----CCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCH
Confidence 999999998 66654 799999999999975 59999999999998887 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC
Q 042723 182 QEAETIALSILKQVMEEKV-TPNNVDIARVAPT 213 (262)
Q Consensus 182 eea~~la~~al~~~~~~d~-s~~~iev~ii~k~ 213 (262)
+||++++++||+.+.+||. ++++++|++|+++
T Consensus 155 ~ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~ 187 (195)
T cd03759 155 DELFETISQALLSAVDRDALSGWGAVVYIITKD 187 (195)
T ss_pred HHHHHHHHHHHHHHHhhCcccCCceEEEEEcCC
Confidence 9999999999999999986 8999999999988
No 28
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.5e-38 Score=267.37 Aligned_cols=173 Identities=32% Similarity=0.555 Sum_probs=164.2
Q ss_pred CCcEEEEeec--------cccC-CCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 042723 34 GSTAIGLKTK--------KRIT-SPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVEST 104 (262)
Q Consensus 34 G~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~l 104 (262)
|+|+|||+++ ++.+ ++++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+..++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 7899999999 5555 678888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCCCCCHHHH
Q 042723 105 TQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEA 184 (262)
Q Consensus 105 a~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea 184 (262)
+++|++++|.+ ++|||+|++||||+|++||+||.+||+|++.+++++|+|+|+.++.++||+.|+++||++||
T Consensus 81 a~~l~~~~~~~-------~~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 153 (185)
T TIGR03634 81 ATLLSNILNSN-------RFFPFIVQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEA 153 (185)
T ss_pred HHHHHHHHHhc-------CCCCeEEEEEEEEEeCCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHH
Confidence 99999999655 45899999999999998999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccC-CCCcEEEEEEeCC
Q 042723 185 ETIALSILKQVMEEKV-TPNNVDIARVAPT 213 (262)
Q Consensus 185 ~~la~~al~~~~~~d~-s~~~iev~ii~k~ 213 (262)
++++++||+.+.+|+. ++++++|++|+++
T Consensus 154 ~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~ 183 (185)
T TIGR03634 154 KKLAVRAIKSAIERDVASGNGIDVAVITKD 183 (185)
T ss_pred HHHHHHHHHHHHHhcccCCCCEEEEEEcCC
Confidence 9999999999999986 8999999999986
No 29
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-38 Score=275.97 Aligned_cols=207 Identities=14% Similarity=0.175 Sum_probs=176.1
Q ss_pred CcEEEEeec--------cccCCCCcCCCccCceEEEc----CcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCC-CCCH
Q 042723 35 STAIGLKTK--------KRITSPLLEPSSVEKIKEID----EHIGCAMSGLIADARTLVEHARVETQNHRFSYGE-PMTV 101 (262)
Q Consensus 35 ~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~----~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~-~i~~ 101 (262)
|.+|||+++ +|++++++..++.+||++|+ +|++++.||..+|++.+++++|.+++.|++++|+ ++|+
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v 80 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTM 80 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCH
Confidence 457999999 77777776666899999998 8999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHH-hcCCCccC--CCccceEEEEEEEEcC-CCCeEEEECCCCceeec----CeEEECCChhhHHHHHHh
Q 042723 102 ESTTQALCDLVLR-FGEGDEES--MSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQC----NAKAIGSGSEGADSSLQE 173 (262)
Q Consensus 102 ~~la~~ls~~l~~-~~~~~~~~--~~rP~~vs~iiaG~d~-~gp~Ly~iD~~G~~~~~----~~~a~G~gs~~a~~~Le~ 173 (262)
+.+|+++++++++ +++....+ +.|||+|++||||||+ .||+||++||+|++.++ +++|+|. +.+++++||+
T Consensus 81 ~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek 159 (236)
T cd03765 81 FDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDR 159 (236)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHH
Confidence 9999999998654 44433000 1489999999999995 68999999999999998 5689996 7999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEE---cCHhHHHHHHHhhhhhhhhcccccCc
Q 042723 174 QYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHL---YTPSEVEAVINRPMSIRRKSSLKILP 242 (262)
Q Consensus 174 ~~~~~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~---~~~~ei~~~l~~~~~~~~~~~~~~~~ 242 (262)
.|+++||+|||++++++||..+++||. ++.+|+|++|+++ ++. .--++-++++..+..+|..-.-|+++
T Consensus 160 ~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (236)
T cd03765 160 VITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQVGHYRRIEEDDPYFAMIRKAWSEALREAFD 233 (236)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeeeeeeEEecCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999996 8999999999999 433 33455678888888888444333333
No 30
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.3e-38 Score=270.88 Aligned_cols=178 Identities=21% Similarity=0.312 Sum_probs=164.8
Q ss_pred hccCCcEEEEeec--------cccCCCC-cCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q 042723 31 IKLGSTAIGLKTK--------KRITSPL-LEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTV 101 (262)
Q Consensus 31 v~~G~tiVgI~~~--------~~~~~~l-~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~ 101 (262)
+++|+|+|||+++ ++.+.++ +.+++.+||++|+++++++++|..+|++.+.+.++.+++.|++.+++++++
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~ 84 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMST 84 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCH
Confidence 5789999999999 5666544 557899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCC-CCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcC----
Q 042723 102 ESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYN---- 176 (262)
Q Consensus 102 ~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~-gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~---- 176 (262)
+.++++|++++ |++|. +||++++||||+|++ +|+||.+||+|++.+++++|+|+|+.++.++||+.|+
T Consensus 85 ~~la~~ls~~l--y~~R~-----~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ 157 (212)
T cd03757 85 EAIAQLLSTIL--YSRRF-----FPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQ 157 (212)
T ss_pred HHHHHHHHHHH--HhhcC-----CCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhcc
Confidence 99999999999 55543 799999999999975 5999999999999999999999999999999999985
Q ss_pred -----CCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC-eE
Q 042723 177 -----KDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YH 215 (262)
Q Consensus 177 -----~~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~-~~ 215 (262)
++||++||++++++||+.+.+||. ++++++|++|+++ ++
T Consensus 158 ~~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~ 203 (212)
T cd03757 158 NNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIE 203 (212)
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEE
Confidence 899999999999999999999996 8999999999999 44
No 31
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.4e-38 Score=263.46 Aligned_cols=176 Identities=30% Similarity=0.534 Sum_probs=165.8
Q ss_pred CcEEEEeec--------cccC-CCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 042723 35 STAIGLKTK--------KRIT-SPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 105 (262)
Q Consensus 35 ~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 105 (262)
+|+|||+++ ++.+ +.++.+++.+||++|+++++++++|..+|++.+.+.++.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999 5555 4777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCCCCCHHHHH
Q 042723 106 QALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAE 185 (262)
Q Consensus 106 ~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~ 185 (262)
+++++.+|.+ ++|||+|++||||+|+++|+||.+||+|++.+++++|+|+|+.+++++||+.|+++|+++||+
T Consensus 81 ~~i~~~~~~~-------~~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~ 153 (188)
T cd03764 81 TLLSNILNSS-------KYFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAK 153 (188)
T ss_pred HHHHHHHHhc-------CCCCcEEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHH
Confidence 9999999664 458999999999999888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEEc
Q 042723 186 TIALSILKQVMEEKV-TPNNVDIARVAPT-YHLY 217 (262)
Q Consensus 186 ~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~~ 217 (262)
+++++||+.+.+||. ++++++|++|+++ ++++
T Consensus 154 ~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~~ 187 (188)
T cd03764 154 KLAIRAIKSAIERDSASGDGIDVVVITKDGYKEL 187 (188)
T ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEECCCCeEeC
Confidence 999999999999996 8999999999999 8876
No 32
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.1e-37 Score=259.60 Aligned_cols=177 Identities=26% Similarity=0.408 Sum_probs=164.9
Q ss_pred CcEEEEeec--------cccCC-CCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 042723 35 STAIGLKTK--------KRITS-PLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 105 (262)
Q Consensus 35 ~tiVgI~~~--------~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 105 (262)
+|+|||+++ +|.+. .++.+++.+||++|+++++++++|..+|++.+.+.++.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 589999999 66665 567778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCCCCCHHHHH
Q 042723 106 QALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAE 185 (262)
Q Consensus 106 ~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~ 185 (262)
++|++.++.| + .||+|++||||+|++||+||.+||.|++.+++++|+|+++.+++++||+.|+++||++||+
T Consensus 81 ~~l~~~l~~~--~------~p~~v~~ivaG~d~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~ 152 (189)
T cd03763 81 TMLKQHLFRY--Q------GHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAK 152 (189)
T ss_pred HHHHHHHHHc--C------CccceeEEEEeEcCCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHH
Confidence 9999999655 2 3999999999999889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEEcCH
Q 042723 186 TIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTP 219 (262)
Q Consensus 186 ~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~~~~ 219 (262)
+++++||+.+.+||. ++++++|++|+++ +++..|
T Consensus 153 ~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~~~ 188 (189)
T cd03763 153 KLVCEAIEAGIFNDLGSGSNVDLCVITKDGVEYLRN 188 (189)
T ss_pred HHHHHHHHHHHHhcCcCCCceEEEEEcCCcEEEecC
Confidence 999999999999996 8999999999999 776543
No 33
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-36 Score=256.48 Aligned_cols=174 Identities=20% Similarity=0.327 Sum_probs=162.0
Q ss_pred CcEEEEeec--------cccCC-CCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 042723 35 STAIGLKTK--------KRITS-PLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 105 (262)
Q Consensus 35 ~tiVgI~~~--------~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 105 (262)
+|+|||+++ ++.+. .++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+.+++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 589999999 55554 677788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCccceEEEEEEEEcC-CCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCCCCCHHHH
Q 042723 106 QALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEA 184 (262)
Q Consensus 106 ~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~-~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea 184 (262)
++|++++|.+ + |||++++||||+|+ +||+||.+||.|++.+++++++|+|+.+++++||+.|+++|+++||
T Consensus 81 ~~l~~~~~~~--~------~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea 152 (188)
T cd03762 81 SLFKNLCYNY--K------EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEEC 152 (188)
T ss_pred HHHHHHHHhc--c------ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHH
Confidence 9999999544 2 68999999999996 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEE
Q 042723 185 ETIALSILKQVMEEKV-TPNNVDIARVAPT-YHL 216 (262)
Q Consensus 185 ~~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~ 216 (262)
++++++||+.+.+||. ++++++|++|+++ ++.
T Consensus 153 ~~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~~~ 186 (188)
T cd03762 153 IKFVKNALSLAMSRDGSSGGVIRLVIITKDGVER 186 (188)
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEEECCCCEEE
Confidence 9999999999999996 8999999999998 553
No 34
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=1.3e-36 Score=255.74 Aligned_cols=177 Identities=42% Similarity=0.715 Sum_probs=164.7
Q ss_pred hccCCcEEEEeec--------cccC-CCCc-CCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 042723 31 IKLGSTAIGLKTK--------KRIT-SPLL-EPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMT 100 (262)
Q Consensus 31 v~~G~tiVgI~~~--------~~~~-~~l~-~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 100 (262)
+++|+|+|||+++ ++.+ ++.+ .+++.+||++|+++++++++|..+|++.+.++++.++..|++.++++++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 5799999999999 4555 4444 4444799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCC-CeEEEECCCCceeec-CeEEECCChhhHHHHHHhhcCCC
Q 042723 101 VESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQC-NAKAIGSGSEGADSSLQEQYNKD 178 (262)
Q Consensus 101 ~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~g-p~Ly~iD~~G~~~~~-~~~a~G~gs~~a~~~Le~~~~~~ 178 (262)
++.+++.+++.++.++.+. ++||+++++|+||+|+++ |+||.+||.|++.++ +++|+|+|+.+++++||+.|+++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~---~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~ 157 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRS---GRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPD 157 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHT---TTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTT
T ss_pred chhhhhhhHHHHhhhcccc---cccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCC
Confidence 9999999999999999887 889999999999999876 999999999999999 69999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEE
Q 042723 179 LTLQEAETIALSILKQVMEEKV-TPNNVDIARV 210 (262)
Q Consensus 179 ms~eea~~la~~al~~~~~~d~-s~~~iev~ii 210 (262)
|+++||++++++||+.+.++|. ++++++|++|
T Consensus 158 ~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 158 LSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp SSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 9999999999999999999985 8999999986
No 35
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-35 Score=249.91 Aligned_cols=175 Identities=27% Similarity=0.457 Sum_probs=161.7
Q ss_pred CcEEEEeec--------cccCCCCc-CCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 042723 35 STAIGLKTK--------KRITSPLL-EPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 105 (262)
Q Consensus 35 ~tiVgI~~~--------~~~~~~l~-~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 105 (262)
+|+|||+++ ++.+..+. .+++.+|||+|+++++++++|..+|++.+.++++.++..|+..++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 589999999 56655444 388999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCccceEEEEEEEEcC-CCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCCCCCHHHH
Q 042723 106 QALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEA 184 (262)
Q Consensus 106 ~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~-~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea 184 (262)
++++++++.+++ |||++++||||+|+ ++|+||.+||.|++.+++++|+|++++++.++||+.|+++|+++||
T Consensus 81 ~~l~~~~~~~~~-------~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea 153 (189)
T cd01912 81 NLLSNILYSYRG-------FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEA 153 (189)
T ss_pred HHHHHHHHhcCC-------CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHH
Confidence 999999954432 79999999999998 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEE
Q 042723 185 ETIALSILKQVMEEKV-TPNNVDIARVAPT-YHL 216 (262)
Q Consensus 185 ~~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~ 216 (262)
++++++||+.+.++|. ++++++|.+|+++ ++.
T Consensus 154 ~~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~ 187 (189)
T cd01912 154 VELVKKAIDSAIERDLSSGGGVDVAVITKDGVEE 187 (189)
T ss_pred HHHHHHHHHHHHHhcCccCCcEEEEEECCCCEEE
Confidence 9999999999999986 7999999999998 554
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=9.3e-35 Score=242.86 Aligned_cols=171 Identities=49% Similarity=0.781 Sum_probs=159.3
Q ss_pred CcEEEEeec--------cccCCCC-cCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 042723 35 STAIGLKTK--------KRITSPL-LEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 105 (262)
Q Consensus 35 ~tiVgI~~~--------~~~~~~l-~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 105 (262)
+|+|||+++ ++.+..+ ..+++.+|||+|+++++++++|..+|++.+.+.++.++..|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 589999999 5555444 4478899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCccceEEEEEEEEcC-CCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCCCCCHHHH
Q 042723 106 QALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEA 184 (262)
Q Consensus 106 ~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~-~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea 184 (262)
++|++++|.+++. +|||++++||||+|+ .+|+||.+||.|++.+++++|+|+|+.++.++||+.|+++||.+||
T Consensus 81 ~~l~~~~~~~~~~-----~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea 155 (182)
T cd01906 81 KLLANLLYEYTQS-----LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEA 155 (182)
T ss_pred HHHHHHHHHhCCC-----ccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHH
Confidence 9999999877653 489999999999997 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccC-CCCcEEEEEE
Q 042723 185 ETIALSILKQVMEEKV-TPNNVDIARV 210 (262)
Q Consensus 185 ~~la~~al~~~~~~d~-s~~~iev~ii 210 (262)
++++++||+.+.++|. ++++++|.+|
T Consensus 156 ~~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 156 IELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 9999999999999997 7899999875
No 37
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-33 Score=228.08 Aligned_cols=180 Identities=23% Similarity=0.262 Sum_probs=167.9
Q ss_pred CcEEEEeec---------cccCCCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 042723 35 STAIGLKTK---------KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 105 (262)
Q Consensus 35 ~tiVgI~~~---------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 105 (262)
.+++||++. ..+.+.++.+++.+|+++|++++.|+++|..+|+.++.+++.++++.|+.++|.+++|+.+|
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 578999999 33446778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCccceEEEEEEEEcCC-CCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCCCCCHHHH
Q 042723 106 QALCDLVLRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEA 184 (262)
Q Consensus 106 ~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~-gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea 184 (262)
+++.+.+..+.+. .+||.|++|+||+|++ ||.||++|..|+..+.+++++|.++.++.++|++.|+|+||.|||
T Consensus 82 hFtR~~La~~LRs-----r~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea 156 (200)
T KOG0177|consen 82 HFTRRELAESLRS-----RTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEA 156 (200)
T ss_pred HHHHHHHHHHHhc-----CCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHH
Confidence 9999999888763 4899999999999985 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEEcCH
Q 042723 185 ETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTP 219 (262)
Q Consensus 185 ~~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~~~~ 219 (262)
+++..+|+.++.+|.. +..++.|.+|+|+ .+.++.
T Consensus 157 ~~lmkKCv~El~kRlvin~~~f~v~IVdkdGir~~~~ 193 (200)
T KOG0177|consen 157 LDLMKKCVLELKKRLVINLPGFIVKIVDKDGIRKLDD 193 (200)
T ss_pred HHHHHHHHHHHHHhcccCCCCcEEEEEcCCCceeccc
Confidence 9999999999999986 8899999999999 776643
No 38
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-33 Score=235.79 Aligned_cols=196 Identities=23% Similarity=0.343 Sum_probs=184.9
Q ss_pred ccCCcEEEEeec--------cccC-CCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q 042723 32 KLGSTAIGLKTK--------KRIT-SPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVE 102 (262)
Q Consensus 32 ~~G~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~ 102 (262)
.+|||++|.+++ +|++ ++++....++||++|+++++-+++|-++|++.+.+.+.++|++|++++++.|+|+
T Consensus 69 ~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVs 148 (285)
T KOG0175|consen 69 AHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVS 148 (285)
T ss_pred cCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehH
Confidence 499999999999 6666 5899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCCCCCHH
Q 042723 103 STTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQ 182 (262)
Q Consensus 103 ~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~e 182 (262)
+.++.|+++++.|...+ +.+..+|+|||+.||.||+||..|+..+-+-.++|+|+.+|.++|+..|+++|+.|
T Consensus 149 aASKllsN~~y~YkGmG-------LsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~e 221 (285)
T KOG0175|consen 149 AASKLLSNMVYQYKGMG-------LSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDE 221 (285)
T ss_pred HHHHHHHHHHhhccCcc-------hhheeeEeeccCCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHH
Confidence 99999999998887665 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEEcCHhHHHHHHHhhhhhhh
Q 042723 183 EAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTPSEVEAVINRPMSIRR 234 (262)
Q Consensus 183 ea~~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~~~~~ei~~~l~~~~~~~~ 234 (262)
||.+|+++|+..+..||. +|.-+.++.|+.+ +..++..++.++..++.+.-+
T Consensus 222 EA~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v~~~Dv~~L~~~~~e~~~ 275 (285)
T KOG0175|consen 222 EAYDLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKVSNTDVSELHYHYYEVAP 275 (285)
T ss_pred HHHHHHHHHHHHHHhcccccCceEEEEEECCccceecCCccHHHHHHHHHHhcC
Confidence 999999999999999996 9999999999999 999999999999776664433
No 39
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-31 Score=225.14 Aligned_cols=179 Identities=28% Similarity=0.425 Sum_probs=169.0
Q ss_pred HHHHhccCCcEEEEeec--------cccC-CCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCC
Q 042723 27 AIEAIKLGSTAIGLKTK--------KRIT-SPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGE 97 (262)
Q Consensus 27 A~kav~~G~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~ 97 (262)
+-++.+.||||+|++++ +|++ ++.+.+++.+||+.|.++|+||.+|..+|...+.+.+-.+.+.+.+..++
T Consensus 30 ~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R 109 (271)
T KOG0173|consen 30 APKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGR 109 (271)
T ss_pred CCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCC
Confidence 34678899999999999 6666 57788999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCC
Q 042723 98 PMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK 177 (262)
Q Consensus 98 ~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~ 177 (262)
+++|-....++.+.+..|+.. .++.+||||+|++|||||.+-|.|+...-+|.+.|+|+..+.++||.+|+|
T Consensus 110 ~~rVv~A~~mlkQ~LFrYqG~--------IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~ 181 (271)
T KOG0173|consen 110 KPRVVTALRMLKQHLFRYQGH--------IGAALILGGVDPTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKP 181 (271)
T ss_pred CCceeeHHHHHHHHHHHhcCc--------ccceeEEccccCCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCc
Confidence 999999999999999888765 699999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC
Q 042723 178 DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 213 (262)
Q Consensus 178 ~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~ 213 (262)
+|++|||++|+.+|+...+.+|+ +|.++++++|++.
T Consensus 182 dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~ 218 (271)
T KOG0173|consen 182 DLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKK 218 (271)
T ss_pred ccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCC
Confidence 99999999999999999999998 8999999999976
No 40
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-31 Score=223.09 Aligned_cols=209 Identities=22% Similarity=0.339 Sum_probs=185.0
Q ss_pred CCccccCCCCCch------hhhhHHHHhccCCcEEEEeec--------cccC-CCCcCCCccCceEEEcCcEEEEEecCH
Q 042723 10 RGVNTFSPEGRLF------QVEYAIEAIKLGSTAIGLKTK--------KRIT-SPLLEPSSVEKIKEIDEHIGCAMSGLI 74 (262)
Q Consensus 10 ~~~~~fsp~G~~~------QieyA~kav~~G~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I~~~i~~~~sG~~ 74 (262)
...++|.|.|... .+...+.++.+||++||+||+ ...+ +++.+.++++|+++++||++++++|..
T Consensus 11 pa~~~f~~~~~~m~~a~~~~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdi 90 (256)
T KOG0185|consen 11 PAPGTFYPSGSLMENAGDYPIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDI 90 (256)
T ss_pred CCCCcCcCccchhhhccCCCcccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccH
Confidence 4567788886432 233446778899999999999 3333 688999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCC-CeEEEECCCCce
Q 042723 75 ADARTLVEHARVETQNHR-FSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTF 152 (262)
Q Consensus 75 ~D~~~l~~~~r~~~~~~~-~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~g-p~Ly~iD~~G~~ 152 (262)
+|+|.+.+.+.+...+.. +..++.+.|+.++++|.+.| |.+|. ++.|++.+++|||+|++| |+|-.+|..|..
T Consensus 91 sD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvl--Y~rRs---KmnPlwntlvVgGv~~~g~~~lg~V~~~G~~ 165 (256)
T KOG0185|consen 91 SDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVL--YARRS---KMNPLWNTLVVGGVDNTGEPFLGYVDLLGVA 165 (256)
T ss_pred HHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHH--HHhhh---ccCchhhheeEeeecCCCCeeEEEEeecccc
Confidence 999999999998877754 56668999999999999999 99998 999999999999999965 999999999999
Q ss_pred eecCeEEECCChhhHHHHHHhhcC---CCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEEcCHhHHH
Q 042723 153 WQCNAKAIGSGSEGADSSLQEQYN---KDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTPSEVE 223 (262)
Q Consensus 153 ~~~~~~a~G~gs~~a~~~Le~~~~---~~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~~~~~ei~ 223 (262)
.+.+..|+|.|.+++.++|++.|. ++++.+||..++.+||+.+.+||. +.++++|++|+++ +++-.+..|.
T Consensus 166 Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~p~qv~ 241 (256)
T KOG0185|consen 166 YESPVVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTISKPYQVK 241 (256)
T ss_pred ccCchhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccceEecCceeee
Confidence 999999999999999999999998 479999999999999999999998 6789999999999 8877776553
No 41
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-30 Score=212.84 Aligned_cols=178 Identities=22% Similarity=0.349 Sum_probs=165.3
Q ss_pred HHhccCCcEEEEeec--------cccCCCC-cCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 042723 29 EAIKLGSTAIGLKTK--------KRITSPL-LEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPM 99 (262)
Q Consensus 29 kav~~G~tiVgI~~~--------~~~~~~l-~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i 99 (262)
+...+|+|+|||++. +|.++.+ +..++.+|||+++|+++++.+|+++|+..|...++..++.|+..++..|
T Consensus 24 PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~m 103 (235)
T KOG0179|consen 24 PYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKM 103 (235)
T ss_pred ccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccc
Confidence 446799999999999 6666544 5678899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCC-CeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCC-
Q 042723 100 TVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK- 177 (262)
Q Consensus 100 ~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~g-p~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~- 177 (262)
++...|++|+.++ |.+|. .||.+..||||+|++| +.+|..||.|++.+..+.|-|+++.+++|+|++....
T Consensus 104 s~~s~A~lls~~L--Y~kRF-----FPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~k 176 (235)
T KOG0179|consen 104 SIHSAAQLLSTIL--YSKRF-----FPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHK 176 (235)
T ss_pred cHHHHHHHHHHHH--hhccc-----ccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCc
Confidence 9999999999999 88776 8999999999999987 9999999999999999999999999999999987642
Q ss_pred ----------CCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC
Q 042723 178 ----------DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 213 (262)
Q Consensus 178 ----------~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~ 213 (262)
.+++|+|+++++++|..+.+||+ +++.++|+|++++
T Consensus 177 n~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~ 223 (235)
T KOG0179|consen 177 NQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKD 223 (235)
T ss_pred CcccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecC
Confidence 58999999999999999999998 8999999999999
No 42
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.8e-28 Score=195.71 Aligned_cols=174 Identities=16% Similarity=0.219 Sum_probs=160.8
Q ss_pred cCCcEEEEeec--------cccC-CCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 042723 33 LGSTAIGLKTK--------KRIT-SPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVES 103 (262)
Q Consensus 33 ~G~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~ 103 (262)
+|+++||++++ +|.. ......++++|||+++|+++++.+|+..|+|.+.+.++...+.|+++.+++|.|+.
T Consensus 7 nGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~ 86 (204)
T KOG0180|consen 7 NGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPET 86 (204)
T ss_pred cCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcHH
Confidence 57777777777 5554 35556789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCC-CeEEEECCCCceee-cCeEEECCChhhHHHHHHhhcCCCCCH
Q 042723 104 TTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQ-CNAKAIGSGSEGADSSLQEQYNKDLTL 181 (262)
Q Consensus 104 la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~g-p~Ly~iD~~G~~~~-~~~~a~G~gs~~a~~~Le~~~~~~ms~ 181 (262)
+++++|.++ |.+|. -||.+..+|||+|+++ |+|..+|..|+... .+|++.|.++....+..|..|+|||.+
T Consensus 87 ~s~mvS~~l--YekRf-----gpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmep 159 (204)
T KOG0180|consen 87 FSSMVSSLL--YEKRF-----GPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEP 159 (204)
T ss_pred HHHHHHHHH--HHhhc-----CCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCH
Confidence 999999999 87765 6999999999999975 99999999999965 589999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC
Q 042723 182 QEAETIALSILKQVMEEKV-TPNNVDIARVAPT 213 (262)
Q Consensus 182 eea~~la~~al~~~~~~d~-s~~~iev~ii~k~ 213 (262)
||..+.+.+||.++.+||. +||+..|.+|+|+
T Consensus 160 d~LFetisQa~Lna~DRDalSGwGa~vyiI~kd 192 (204)
T KOG0180|consen 160 DELFETISQALLNAVDRDALSGWGAVVYIITKD 192 (204)
T ss_pred HHHHHHHHHHHHhHhhhhhhccCCeEEEEEccc
Confidence 9999999999999999996 9999999999999
No 43
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-28 Score=200.40 Aligned_cols=189 Identities=16% Similarity=0.283 Sum_probs=172.8
Q ss_pred HhccCCcEEEEeec--------cccC-CCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 042723 30 AIKLGSTAIGLKTK--------KRIT-SPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMT 100 (262)
Q Consensus 30 av~~G~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 100 (262)
.+..|||++|+.++ +|++ +.++.++-.+|+.+|+|+|+||-||.++|.|.+.+.++.....|...++.+++
T Consensus 15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 47799999999999 6665 57888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCC-CCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCCCC
Q 042723 101 VESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDL 179 (262)
Q Consensus 101 ~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~-gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~m 179 (262)
+...|+.++++.++|... +.+.+||||||+. |.++|.|---|...+.+++.-|+|+.++.++++..|+|+|
T Consensus 95 v~~aA~l~r~~~Y~~re~--------L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nM 166 (224)
T KOG0174|consen 95 VHTAASLFREICYNYREM--------LSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNM 166 (224)
T ss_pred HHHHHHHHHHHHHhCHHh--------hhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCC
Confidence 999999999999666443 7899999999985 8999999888888999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC---eEEcCHhHHHHHH
Q 042723 180 TLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT---YHLYTPSEVEAVI 226 (262)
Q Consensus 180 s~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~---~~~~~~~ei~~~l 226 (262)
++||++++.++|+..++.||- +|.-|.+.+|+++ .+++..+++..+.
T Consensus 167 t~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~~ 217 (224)
T KOG0174|consen 167 TLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQFA 217 (224)
T ss_pred CHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCcccccc
Confidence 999999999999999999997 6888999999999 6677777766553
No 44
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.95 E-value=2.6e-26 Score=190.49 Aligned_cols=157 Identities=22% Similarity=0.277 Sum_probs=133.7
Q ss_pred CCcEEEEeec--------cccC-CCCcCCCccCceEEE-cCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 042723 34 GSTAIGLKTK--------KRIT-SPLLEPSSVEKIKEI-DEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVES 103 (262)
Q Consensus 34 G~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I-~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~ 103 (262)
|+|+|||+++ +|++ +.++.+++.+||++| +++++++++|..+|+|.|.+.++.+++.|+. +. ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHH
Confidence 7899999999 5655 688899999999999 9999999999999999999999999999882 22 466
Q ss_pred HHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeec--CeEEECCChhhHHHHHHhhcC-CCCC
Q 042723 104 TTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQC--NAKAIGSGSEGADSSLQEQYN-KDLT 180 (262)
Q Consensus 104 la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~--~~~a~G~gs~~a~~~Le~~~~-~~ms 180 (262)
.++....+. .+ + -.+|+++++|++ | .|+||.+||.|+..+. ++.|+|+|+.++.++||+.|+ ++|
T Consensus 76 ~a~l~~~l~-~~-~-----~~~~l~~~~lv~--d--~~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m- 143 (172)
T PRK05456 76 AVELAKDWR-TD-R-----YLRRLEAMLIVA--D--KEHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL- 143 (172)
T ss_pred HHHHHHHHH-hc-c-----CCCccEEEEEEE--c--CCcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC-
Confidence 665443332 12 1 236888999994 3 3799999999999766 899999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHhhccC-CCCcEEEEE
Q 042723 181 LQEAETIALSILKQVMEEKV-TPNNVDIAR 209 (262)
Q Consensus 181 ~eea~~la~~al~~~~~~d~-s~~~iev~i 209 (262)
||++++++|++.+.+||. ++++|+|-.
T Consensus 144 --eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 144 --SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred --CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 999999999999999997 899998864
No 45
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.94 E-value=1.5e-24 Score=175.82 Aligned_cols=153 Identities=44% Similarity=0.651 Sum_probs=141.3
Q ss_pred CcEEEEeec--------cccCCCCc-CCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 042723 35 STAIGLKTK--------KRITSPLL-EPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 105 (262)
Q Consensus 35 ~tiVgI~~~--------~~~~~~l~-~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 105 (262)
+|+|||+++ ++.+..+. ...+..|+++++++++++++|..+|++.+.++++.+++.|++.+++++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 578999988 44444443 367889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeec-CeEEECCChhhHHHHHHhhcCCCCCHHHH
Q 042723 106 QALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQC-NAKAIGSGSEGADSSLQEQYNKDLTLQEA 184 (262)
Q Consensus 106 ~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~-~~~a~G~gs~~a~~~Le~~~~~~ms~eea 184 (262)
+.+++.++.+++ . ||+++++||||+|+++|+||.+||.|.+.+. .++++|.++..+.++|++.|+++|+.+|+
T Consensus 81 ~~~~~~~~~~~~-~-----~p~~~~~iiag~~~~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~ 154 (164)
T cd01901 81 KELAKLLQVYTQ-G-----RPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEA 154 (164)
T ss_pred HHHHHHHHHhcC-C-----CCcceEEEEEEEcCCCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHH
Confidence 999999988765 3 8999999999999988999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 042723 185 ETIALSILK 193 (262)
Q Consensus 185 ~~la~~al~ 193 (262)
++++.+||+
T Consensus 155 ~~~~~~~l~ 163 (164)
T cd01901 155 VELALKALK 163 (164)
T ss_pred HHHHHHHHh
Confidence 999999986
No 46
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.93 E-value=7.5e-25 Score=180.75 Aligned_cols=155 Identities=19% Similarity=0.189 Sum_probs=129.7
Q ss_pred CcEEEEeec--------cccC-CCCcCCCccCceEEEcC-cEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 042723 35 STAIGLKTK--------KRIT-SPLLEPSSVEKIKEIDE-HIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVEST 104 (262)
Q Consensus 35 ~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I~~-~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~l 104 (262)
+|+|||+++ +|++ +.++.+++.+||++|++ +++++++|..+|++.|.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 689999999 5654 67889999999999999 999999999999999999999999999987764 33
Q ss_pred HHHHHHHHHHhcCCCccCCCccce-EEEEEEEEcCCCCeEEEECCCCceeec--CeEEECCChhhHHHHHHhhcCCC-CC
Q 042723 105 TQALCDLVLRFGEGDEESMSRPFG-VSLLIAGSDENGPSLYYTDPSGTFWQC--NAKAIGSGSEGADSSLQEQYNKD-LT 180 (262)
Q Consensus 105 a~~ls~~l~~~~~~~~~~~~rP~~-vs~iiaG~d~~gp~Ly~iD~~G~~~~~--~~~a~G~gs~~a~~~Le~~~~~~-ms 180 (262)
++.+..++ .| +.+|+. +.+|++++ ++||.+||.|.+.+. ++.|+|+|+.++.++||..|+++ |+
T Consensus 76 a~l~~~l~-~~-------~~~~~l~a~~iv~~~----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms 143 (171)
T cd01913 76 VELAKDWR-TD-------RYLRRLEAMLIVADK----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS 143 (171)
T ss_pred HHHHHHHH-hc-------cCcCceEEEEEEeCC----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC
Confidence 44433332 12 224554 66676644 399999999999998 49999999999999999999995 99
Q ss_pred HHHHHHHHHHHHHHHhhccC-CCCcEEEEE
Q 042723 181 LQEAETIALSILKQVMEEKV-TPNNVDIAR 209 (262)
Q Consensus 181 ~eea~~la~~al~~~~~~d~-s~~~iev~i 209 (262)
+.+++++|++.+.+||. ++++|+|-.
T Consensus 144 ---~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 144 ---AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred ---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 56999999999999997 899988754
No 47
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.92 E-value=4.7e-24 Score=176.02 Aligned_cols=156 Identities=21% Similarity=0.261 Sum_probs=128.3
Q ss_pred CcEEEEeec--------cccC-CCCcCCCccCceEEE-cCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 042723 35 STAIGLKTK--------KRIT-SPLLEPSSVEKIKEI-DEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVEST 104 (262)
Q Consensus 35 ~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I-~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~l 104 (262)
+|+|||+++ +|++ +.++.+++.+||++| +++++++++|..+|++.|.++++.+++.|+... .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 689999999 5654 678899999999999 599999999999999999999999999987632 3555
Q ss_pred HHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeec--CeEEECCChhhHHHHHHhhc-CCCCCH
Q 042723 105 TQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQC--NAKAIGSGSEGADSSLQEQY-NKDLTL 181 (262)
Q Consensus 105 a~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~--~~~a~G~gs~~a~~~Le~~~-~~~ms~ 181 (262)
++.++++. .| + ..+.+.+.+|++|+ |+||.+||.|.+.++ ++.++|+|+.++.++||..| +++|+
T Consensus 76 a~l~~~~~-~~--~----~~~~l~a~~iv~~~----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s- 143 (171)
T TIGR03692 76 VELAKDWR-TD--R----YLRRLEAMLIVADK----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS- 143 (171)
T ss_pred HHHHHHHh-hc--c----cccccEEEEEEEcC----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC-
Confidence 55544421 11 1 11234577777644 499999999999996 69999999999999999999 46777
Q ss_pred HHHHHHHHHHHHHHhhccC-CCCcEEEEE
Q 042723 182 QEAETIALSILKQVMEEKV-TPNNVDIAR 209 (262)
Q Consensus 182 eea~~la~~al~~~~~~d~-s~~~iev~i 209 (262)
|+++++++++.+.+||. ++++|+|-.
T Consensus 144 --a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 144 --AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred --HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 99999999999999997 899988754
No 48
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.44 E-value=5.4e-14 Score=76.67 Aligned_cols=23 Identities=74% Similarity=1.324 Sum_probs=22.3
Q ss_pred CCCCccccCCCCCchhhhhHHHH
Q 042723 8 YDRGVNTFSPEGRLFQVEYAIEA 30 (262)
Q Consensus 8 yd~~~~~fsp~G~~~QieyA~ka 30 (262)
||+++|+|||+|||+|||||+||
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 89999999999999999999987
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.5e-10 Score=96.16 Aligned_cols=202 Identities=17% Similarity=0.179 Sum_probs=148.7
Q ss_pred CCcEEEEeec--------cccCCCCcCCCccCceEEE---cCc-EEEEEecCHHHHHHHHHHHHHHHHHHHHHhCC-CCC
Q 042723 34 GSTAIGLKTK--------KRITSPLLEPSSVEKIKEI---DEH-IGCAMSGLIADARTLVEHARVETQNHRFSYGE-PMT 100 (262)
Q Consensus 34 G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I---~~~-i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~-~i~ 100 (262)
++.|||++.. +|++..+-.-+.++|+|.. +++ ++++.+|..+-.|.+++.+.+..+......-. -.+
T Consensus 1 MTYCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~s 80 (255)
T COG3484 1 MTYCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPS 80 (255)
T ss_pred CceEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchh
Confidence 3668888887 5665544334566777655 333 56778999999999999998776522111111 234
Q ss_pred HHHHHHHHHHHHHHhcCCCcc-C--CCccceEEEEEEEEcCCC-CeEEEECCCCceee----cCeEEECCChhhHHHHHH
Q 042723 101 VESTTQALCDLVLRFGEGDEE-S--MSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQ----CNAKAIGSGSEGADSSLQ 172 (262)
Q Consensus 101 ~~~la~~ls~~l~~~~~~~~~-~--~~rP~~vs~iiaG~d~~g-p~Ly~iD~~G~~~~----~~~~a~G~gs~~a~~~Le 172 (262)
.-+.+..++....+-..+.+- + .---|.|++|+||-=..+ |.||.|.|.|++.+ ..|..+|. ..+-+++|+
T Consensus 81 m~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPild 159 (255)
T COG3484 81 MYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILD 159 (255)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchhhh
Confidence 556667777776555544400 0 012489999999965544 89999999999974 37999998 568899999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHhhccCC-CCcEEEEEEeCC-eE---EcCHhHHHHHHHhhhhhhhhc
Q 042723 173 EQYNKDLTLQEAETIALSILKQVMEEKVT-PNNVDIARVAPT-YH---LYTPSEVEAVINRPMSIRRKS 236 (262)
Q Consensus 173 ~~~~~~ms~eea~~la~~al~~~~~~d~s-~~~iev~ii~k~-~~---~~~~~ei~~~l~~~~~~~~~~ 236 (262)
+.+..++++||+.++|+-+|...++.+++ |-.+++-++.+| ++ .+.-.|=++|+..|.+.|..-
T Consensus 160 R~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~~v~~~~ri~edd~Y~a~ir~~W~~~ 228 (255)
T COG3484 160 RTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSFSVRHTLRIREDDPYFAKIRSLWSSY 228 (255)
T ss_pred hhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccceeeeeeeEeccCChHHHHHHHHHHHH
Confidence 99999999999999999999999999985 889999999999 32 333455578999998888654
No 50
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.5e-10 Score=92.93 Aligned_cols=160 Identities=19% Similarity=0.228 Sum_probs=121.1
Q ss_pred cCCcEEEEeec---------cccCCCCcCCCccCceEEEc-CcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q 042723 33 LGSTAIGLKTK---------KRITSPLLEPSSVEKIKEID-EHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVE 102 (262)
Q Consensus 33 ~G~tiVgI~~~---------~~~~~~l~~~~~~~Ki~~I~-~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~ 102 (262)
++||||+++.+ ..+-++.+.+.+.+|+.+|. .+++.+++|..+|+..|.+.+..+++.|. .
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~---------g 73 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ---------G 73 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc---------C
Confidence 68999999988 12225677788888877774 48999999999999999999999988875 2
Q ss_pred HHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeec--CeEEECCChhhHHHHHHhhcCC-CC
Q 042723 103 STTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQC--NAKAIGSGSEGADSSLQEQYNK-DL 179 (262)
Q Consensus 103 ~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~--~~~a~G~gs~~a~~~Le~~~~~-~m 179 (262)
.|.+..-++.++|.... ..|-+.+.+||+--+ +++-+...|.+.+. ...|+|+|..++.+.....+.. ++
T Consensus 74 ~L~raavelaKdwr~Dk---~lr~LEAmllVad~~----~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~l 146 (178)
T COG5405 74 DLFRAAVELAKDWRTDK---YLRKLEAMLLVADKT----HILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTEL 146 (178)
T ss_pred cHHHHHHHHHHhhhhhh---HHHHHhhheeEeCCC----cEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCC
Confidence 33444445555565443 567788999998443 68999999988754 5999999999999999999865 56
Q ss_pred CHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEe
Q 042723 180 TLQEAETIALSILKQVMEEKV-TPNNVDIARVA 211 (262)
Q Consensus 180 s~eea~~la~~al~~~~~~d~-s~~~iev~ii~ 211 (262)
| |.+++.++|..+.+-.. +..++.|-.+.
T Consensus 147 s---A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 147 S---AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred C---HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 5 66788888888765543 56666665543
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=86.30 E-value=2.8 Score=35.31 Aligned_cols=49 Identities=20% Similarity=0.324 Sum_probs=43.6
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccCC-CCcEEEEEEeCC
Q 042723 165 EGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVT-PNNVDIARVAPT 213 (262)
Q Consensus 165 ~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~s-~~~iev~ii~k~ 213 (262)
+.+...|.+.|++.|+++++..++.++|..+.....+ +..+++...++.
T Consensus 131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 131 EIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 7888999999999999999999999999999887764 778888887765
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=80.83 E-value=5.2 Score=34.99 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=50.9
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC---eEEcCHhHHHHHH
Q 042723 164 SEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT---YHLYTPSEVEAVI 226 (262)
Q Consensus 164 s~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~---~~~~~~~ei~~~l 226 (262)
-+.+..+|.+.|.+.++++++.+++.++|..+..-.. .+..++++.+++. +.++-..+++.+.
T Consensus 131 Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~~~rl~kkDie~L~ 197 (293)
T COG4079 131 KEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDPVLRLVKKDIETLR 197 (293)
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999986666 4788999999887 5566556665543
No 53
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=78.82 E-value=3.1 Score=32.92 Aligned_cols=84 Identities=25% Similarity=0.266 Sum_probs=61.1
Q ss_pred EEECCCCceeecCeEEECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCCeEEcCHhHHH
Q 042723 144 YYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVE 223 (262)
Q Consensus 144 y~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii~k~~~~~~~~ei~ 223 (262)
..+|-+|.+.+.+|-..|-|+..|.+-+-..|-..+++|||.++--.=+- + .++-+.+. -.+..+.++.|.
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kIkNteIA---K-eL~LPPVK-----LHCSMLAEDAIK 141 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKIKNTEIA---K-ELSLPPVK-----LHCSMLAEDAIK 141 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhcccHHHH---H-hccCCchh-----hhhHHHHHHHHH
Confidence 46888999999999999999999999999999999999999764322111 1 11111111 115578888888
Q ss_pred HHHHhhhhhhhhc
Q 042723 224 AVINRPMSIRRKS 236 (262)
Q Consensus 224 ~~l~~~~~~~~~~ 236 (262)
..+..+.+++...
T Consensus 142 aAikdyk~Kq~~~ 154 (157)
T KOG3361|consen 142 AAIKDYKEKQNKP 154 (157)
T ss_pred HHHHHHHHhccCC
Confidence 8888888776543
No 54
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=66.88 E-value=17 Score=33.82 Aligned_cols=68 Identities=12% Similarity=0.089 Sum_probs=53.4
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC---eEEcCHhHHHHHHHhhhhhhhhc-------ccccCcc
Q 042723 174 QYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSEVEAVINRPMSIRRKS-------SLKILPW 243 (262)
Q Consensus 174 ~~~~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii~k~---~~~~~~~ei~~~l~~~~~~~~~~-------~~~~~~~ 243 (262)
...|.++.|+...+++++-+.-.+ ..+.+.+|+.+ +.+-+.-|+++.++-++..++.+ ++-.+||
T Consensus 30 ~~~p~~~~e~~~~~vrd~c~~h~~-----q~~t~kwideegdp~tv~sqmeleea~r~~~~~~d~el~ihvf~~~pe~pg 104 (593)
T KOG0695|consen 30 SVDPATTFEELCEEVRDMCRLHQQ-----QPLTLKWIDEEGDPCTVSSQMELEEAFRLARQCRDEELIIHVFPSTPEQPG 104 (593)
T ss_pred eccCcccHHHHHHHHHHHHHHhhc-----CCceeEeecCCCCcceechhhhHHHHHHHHHhccccceEEEEccCCCCCCC
Confidence 345778899988888776655433 36889999988 88899999999999998888877 4456788
Q ss_pred hhh
Q 042723 244 LQR 246 (262)
Q Consensus 244 ~~~ 246 (262)
|||
T Consensus 105 lpc 107 (593)
T KOG0695|consen 105 LPC 107 (593)
T ss_pred CCC
Confidence 886
No 55
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=57.19 E-value=37 Score=24.71 Aligned_cols=56 Identities=7% Similarity=0.064 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC---eEEcCHhHHHHHHHhhhhhhhhc
Q 042723 176 NKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSEVEAVINRPMSIRRKS 236 (262)
Q Consensus 176 ~~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii~k~---~~~~~~~ei~~~l~~~~~~~~~~ 236 (262)
.+.++.++..+..++.... .....+.|.+++.+ +.+-+.+|+++.++=++..|+.+
T Consensus 17 d~~~s~e~L~~~v~~~c~~-----~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~~~ 75 (83)
T cd06404 17 DPSISLEELCNEVRDMCRF-----HNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYELNKDSE 75 (83)
T ss_pred CCCcCHHHHHHHHHHHhCC-----CCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHhcCccc
Confidence 3466777777666655544 24458999999997 99999999999998887777665
No 56
>PRK08868 flagellar protein FlaG; Provisional
Probab=55.07 E-value=67 Score=25.91 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhhc-c--C--CCCcEEEEEEeCC----eEEcCHhHHHHHHHhhhhh
Q 042723 181 LQEAETIALSILKQVMEE-K--V--TPNNVDIARVAPT----YHLYTPSEVEAVINRPMSI 232 (262)
Q Consensus 181 ~eea~~la~~al~~~~~~-d--~--s~~~iev~ii~k~----~~~~~~~ei~~~l~~~~~~ 232 (262)
+++|++-+-+.+...... . + ..+.+-|.||+++ +|.+|+||+-.+.+++.+.
T Consensus 73 l~~aVeklNe~~~~~n~~L~F~vdeetgr~VVkViD~~T~EVIRQIP~Ee~L~la~~l~e~ 133 (144)
T PRK08868 73 LEKMVEQMNEFVKSINKGLSFRVDEESGRDVVTIYEASTGDIIRQIPDEEMLEVLRRLAEQ 133 (144)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEecCCCCEEEEEEECCCCceeeeCCCHHHHHHHHHHHHh
Confidence 334555555555544322 1 1 2356889999987 9999999999999998843
No 57
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=49.69 E-value=20 Score=24.23 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=27.6
Q ss_pred cccCC-CCCchhhhhHHHHhccCCcEEEEeec
Q 042723 13 NTFSP-EGRLFQVEYAIEAIKLGSTAIGLKTK 43 (262)
Q Consensus 13 ~~fsp-~G~~~QieyA~kav~~G~tiVgI~~~ 43 (262)
|.||+ +|.+.--+|...|..+|-..+||.-.
T Consensus 6 t~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh 37 (67)
T smart00481 6 SDYSLLDGALSPEELVKRAKELGLKAIAITDH 37 (67)
T ss_pred cCCccccccCCHHHHHHHHHHcCCCEEEEeeC
Confidence 56788 89999999999999999999999766
No 58
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=48.26 E-value=13 Score=23.68 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=24.8
Q ss_pred EECCChhhHHHHHHhhc-CCCCCHHHHHHHHHHH
Q 042723 159 AIGSGSEGADSSLQEQY-NKDLTLQEAETIALSI 191 (262)
Q Consensus 159 a~G~gs~~a~~~Le~~~-~~~ms~eea~~la~~a 191 (262)
+.|+....+...+++.. .++++.++.++.+++.
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGMDVEELIKQALKL 45 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhh
Confidence 35888888888888888 8889999988777653
No 59
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=48.23 E-value=41 Score=24.72 Aligned_cols=54 Identities=11% Similarity=0.319 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC---eEEcCHhHHHHHHHhhhhhhhhcccccCcc
Q 042723 180 TLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSEVEAVINRPMSIRRKSSLKILPW 243 (262)
Q Consensus 180 s~eea~~la~~al~~~~~~d~s~~~iev~ii~k~---~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~ 243 (262)
+.+|.+.++++-|.. ..|-+-..+.+ ++++++++++-.+++-. ...++.+.+||
T Consensus 29 ~~kdLl~lmr~~f~~--------~dIaLNYrD~EGDLIRllddeDv~LMV~~~r--~~~~~k~~fPW 85 (92)
T cd06399 29 LLKDLLELTRREFQR--------EDIALNYRDAEGDLIRLLSDEDVALMVRQSR--GLPSQKRLFPW 85 (92)
T ss_pred cHHHHHHHHHHHhch--------hheeeeeecCCCCEEEEcchhhHHHHHHHHh--cCCCcccccce
Confidence 456666666555543 24555566666 99999999999887764 44567788888
No 60
>PRK08452 flagellar protein FlaG; Provisional
Probab=46.74 E-value=97 Score=24.30 Aligned_cols=30 Identities=3% Similarity=-0.035 Sum_probs=25.7
Q ss_pred CCcEEEEEEeCC----eEEcCHhHHHHHHHhhhh
Q 042723 202 PNNVDIARVAPT----YHLYTPSEVEAVINRPMS 231 (262)
Q Consensus 202 ~~~iev~ii~k~----~~~~~~~ei~~~l~~~~~ 231 (262)
.+.+-|.+++++ +|.+|++++-.+..++.+
T Consensus 81 ~~~~vVkVvD~~T~eVIRqIP~Ee~L~l~~~m~e 114 (124)
T PRK08452 81 IKGLVVSVKEANGGKVIREIPSKEAIELMEYMRD 114 (124)
T ss_pred CCcEEEEEEECCCCceeeeCCCHHHHHHHHHHHH
Confidence 356888899887 999999999999988874
No 61
>PRK07738 flagellar protein FlaG; Provisional
Probab=44.07 E-value=1.1e+02 Score=23.81 Aligned_cols=51 Identities=16% Similarity=0.123 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhhc-c--C--CCCcEEEEEEeCC----eEEcCHhHHHHHHHhhhh
Q 042723 181 LQEAETIALSILKQVMEE-K--V--TPNNVDIARVAPT----YHLYTPSEVEAVINRPMS 231 (262)
Q Consensus 181 ~eea~~la~~al~~~~~~-d--~--s~~~iev~ii~k~----~~~~~~~ei~~~l~~~~~ 231 (262)
++++++-+-+.+...-.. . + ..+.+-|.+++++ +|.+|++++-.++.++.+
T Consensus 48 l~~aveklN~~l~~~~~~L~F~vdeet~~~vVkVvD~~T~EVIRQIPpEe~L~l~~~m~e 107 (117)
T PRK07738 48 LEEVVDGMNELLEPSQTSLKFELHEKLNEYYVQVVDERTNEVIREIPPKKLLDMYAAMME 107 (117)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCeeeeeCCCHHHHHHHHHHHH
Confidence 334455455555543221 1 1 2366899999987 999999999999998875
No 62
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=41.98 E-value=51 Score=24.64 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=25.0
Q ss_pred CCcEEEEEEeCC----eEEcCHhHHHHHHHhhhh
Q 042723 202 PNNVDIARVAPT----YHLYTPSEVEAVINRPMS 231 (262)
Q Consensus 202 ~~~iev~ii~k~----~~~~~~~ei~~~l~~~~~ 231 (262)
.+.+-|.+++++ +|.+|++++-.+..++.+
T Consensus 65 ~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l~e 98 (107)
T PF03646_consen 65 SGRVVVKVIDKETGEVIRQIPPEELLDLAKRLRE 98 (107)
T ss_dssp TTEEEEEEEETTT-SEEEEE-HHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCCcHHHHHHHHHHHH
Confidence 356889999987 899999999999988875
No 63
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=28.13 E-value=2e+02 Score=23.11 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC
Q 042723 176 NKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT 213 (262)
Q Consensus 176 ~~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii~k~ 213 (262)
.+.+++++|.+++..++.++.+. ++.+.|.+++..
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~---g~~VtvaVVD~~ 39 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQL---GVPVTVAVVDAG 39 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHh---CCceEEEEECCC
Confidence 35789999999999999998654 889999999988
No 64
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=26.34 E-value=2.5e+02 Score=21.88 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=24.3
Q ss_pred CcEEEEEEeCC----eEEcCHhHHHHHHHhhh
Q 042723 203 NNVDIARVAPT----YHLYTPSEVEAVINRPM 230 (262)
Q Consensus 203 ~~iev~ii~k~----~~~~~~~ei~~~l~~~~ 230 (262)
+.+-|.|++++ ++.+|++++-+++.++.
T Consensus 78 g~~vVkI~d~~TgeVIRqIPpee~L~l~~r~~ 109 (120)
T COG1334 78 GELVVKIIDKDTGEVIRQIPPEEALELAARMR 109 (120)
T ss_pred CcEEEEEEECCCCcchhhCChHHHHHHHHHHH
Confidence 55788889887 99999999999998887
No 65
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=26.13 E-value=70 Score=27.06 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEc
Q 042723 98 PMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSD 137 (262)
Q Consensus 98 ~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d 137 (262)
+-+|++.+..|+++++.|.+++ +.+ .++++||.
T Consensus 44 ~rtP~~~a~Dl~~~i~~y~~~w---~~~----~vvLiGYS 76 (192)
T PF06057_consen 44 ERTPEQTAADLARIIRHYRARW---GRK----RVVLIGYS 76 (192)
T ss_pred hCCHHHHHHHHHHHHHHHHHHh---CCc----eEEEEeec
Confidence 5578999999999999999886 443 34778875
No 66
>PF08289 Flu_M1_C: Influenza Matrix protein (M1) C-terminal domain; InterPro: IPR013188 Matrix protein (M1) of Influenza virus is a bifunctional membrane/RNA-binding protein that mediates the encapsidation of RNA-nucleoprotein cores into the membrane envelope. It is therefore required that M1 binds both membrane and RNA simultaneously. M1 is comprised of two domains connected by a linker sequence. The C-terminal domain contains alpha-helical structure and appears to be involved in growth and virulence of the virus [, ].; GO: 0003723 RNA binding, 0005198 structural molecule activity
Probab=25.87 E-value=1.9e+02 Score=21.07 Aligned_cols=47 Identities=19% Similarity=0.146 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCC
Q 042723 73 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGD 119 (262)
Q Consensus 73 ~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~ 119 (262)
-.+|++.+.+.++..+.--+-.--.+-+.+.|++.+-+.++.|..+.
T Consensus 41 q~~e~~eiAsq~r~~i~amRsiGt~~~~~~Gl~dDlle~Lq~yQk~M 87 (95)
T PF08289_consen 41 QAAEAMEIASQARSMIQAMRSIGTHPKNSEGLADDLLENLQAYQKRM 87 (95)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHH
Confidence 56899999999999988877666667788889999999999887664
No 67
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.12 E-value=73 Score=24.17 Aligned_cols=31 Identities=26% Similarity=0.240 Sum_probs=27.3
Q ss_pred ceEEEcCcEEEEEecCHHHHHHHHHHHHHHH
Q 042723 58 KIKEIDEHIGCAMSGLIADARTLVEHARVET 88 (262)
Q Consensus 58 Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~ 88 (262)
-+++|-+++++.+.|..+|+-.+.++++...
T Consensus 9 ~~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~ 39 (124)
T COG4728 9 IIFKIKDKLGLTFVSKSADMSIQVEKAERLI 39 (124)
T ss_pred EEEEEhhhcCcEEEEecchhHHHHHHHHHhh
Confidence 4789999999999999999999999887754
No 68
>PRK09732 hypothetical protein; Provisional
Probab=24.46 E-value=2.6e+02 Score=22.13 Aligned_cols=41 Identities=17% Similarity=0.026 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC-----eEEcCHh
Q 042723 177 KDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT-----YHLYTPS 220 (262)
Q Consensus 177 ~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii~k~-----~~~~~~~ 220 (262)
..||++.|.+++..++..+.+. +..+.|.|+|.. +.+.+.-
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~---g~~v~iaVvD~~G~l~a~~RmDgA 50 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN---NWSVSIAVADDGGHLLALSRMDDC 50 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh---CCCEEEEEEcCCCCEEEEEEcCCC
Confidence 4689999999999999998764 568999999987 5555543
No 69
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=24.02 E-value=1e+02 Score=19.83 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=26.4
Q ss_pred EEECCCCceeecCeEEECCChhhHHHHHHhhcC
Q 042723 144 YYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYN 176 (262)
Q Consensus 144 y~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~ 176 (262)
+.|+|+|.+...--...|.....+...||+...
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~LG 35 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEALG 35 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHhC
Confidence 678999999887777788888888887776553
No 70
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=23.68 E-value=77 Score=25.01 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=27.4
Q ss_pred cccC-CCCCchhhhhHHHHhccCCcEEEEeec
Q 042723 13 NTFS-PEGRLFQVEYAIEAIKLGSTAIGLKTK 43 (262)
Q Consensus 13 ~~fs-p~G~~~QieyA~kav~~G~tiVgI~~~ 43 (262)
|.|| ++|...--||..+|.++|=+.|||.-.
T Consensus 7 T~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH 38 (175)
T PF02811_consen 7 TKYSILDGKDSPEEYVEQAKEKGLDAIAITDH 38 (175)
T ss_dssp -TTTSSTSSSSHHHHHHHHHHTTESEEEEEEE
T ss_pred ccCcchhhcCCHHHHHHHHHHcCCCEEEEcCC
Confidence 5678 889999999999999999999999877
No 71
>COG4302 EutC Ethanolamine ammonia-lyase, small subunit [Amino acid transport and metabolism]
Probab=21.89 E-value=3.6e+02 Score=23.96 Aligned_cols=120 Identities=17% Similarity=0.267 Sum_probs=78.8
Q ss_pred EEEEecCHHHH-----HHHHHHHHHHHHHHHHHhCCCCCHHH----HHHHHHHHHHHhcCCCccCCCccceEEEEEEEEc
Q 042723 67 GCAMSGLIADA-----RTLVEHARVETQNHRFSYGEPMTVES----TTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSD 137 (262)
Q Consensus 67 ~~~~sG~~~D~-----~~l~~~~r~~~~~~~~~~~~~i~~~~----la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d 137 (262)
++..-|+.+++ ..+..-+....+.+.+..+.++-++. +++.|++++ + --+..|+.|--
T Consensus 163 ivVaDGLSa~AI~an~~~il~~l~eglk~~G~svgt~~fVk~gRVa~aD~IgE~L----------g---AkvviiLIGER 229 (294)
T COG4302 163 IVVADGLSALAITANYEPILPPLMEGLKAAGLSVGTPFFVKYGRVAVADQIGEIL----------G---AKVVIILIGER 229 (294)
T ss_pred EEecCcccHHHHHhhHHHHHHHHHHHHHhcCcccCChhheeecchhhHHHHHHHh----------C---CcEEEEEeccC
Confidence 44555666654 34555566666666666666554433 445556555 1 23666666643
Q ss_pred CCCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccCCCCc
Q 042723 138 ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNN 204 (262)
Q Consensus 138 ~~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~s~~~ 204 (262)
|-|-.-|..|.|..|.- -+|. -...++.+.+.+.+..+.-||-..++..+++..++..+|-+
T Consensus 230 ---PGL~t~eSls~Y~tY~p-rVg~-~eA~Rt~ISNIh~~G~p~veAa~~i~~li~~ml~~k~SGv~ 291 (294)
T COG4302 230 ---PGLSTPESLSLYFTYAP-RVGL-PEADRTCISNIHQGGTPPVEAAAVIVYLIKEMLERKASGVN 291 (294)
T ss_pred ---CCCCCcccceeeEEecC-ccCC-chhhhHHHhccccCCCCHHHHHHHHHHHHHHHHHhhccCCc
Confidence 66777777777766531 2333 45667778888899999999999999999999998777644
No 72
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=21.83 E-value=4.3e+02 Score=21.26 Aligned_cols=93 Identities=22% Similarity=0.180 Sum_probs=62.0
Q ss_pred CeEE-EECCCCceeecCeEEECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhc--cCCC--CcEE----EEEEe
Q 042723 141 PSLY-YTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE--KVTP--NNVD----IARVA 211 (262)
Q Consensus 141 p~Ly-~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~--d~s~--~~ie----v~ii~ 211 (262)
-.|| .+| .|.+....|-..|-+.-.+.+-+=..+-...|++||.++........... +... ..+. |....
T Consensus 43 i~l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te~v~Gkti~EAl~i~~~~~~m~~~~~~~~~~~l~d~~~l~~v~~~p 121 (150)
T COG0822 43 ITLYLKVD-NGVIEDAKFKGFGCAISIASSSMMTELVKGKTLDEALKITEAFTDMAKELGGDPDDRLGDLVALAGVALPP 121 (150)
T ss_pred EEEEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhHhhhhhcccc
Confidence 4566 466 88888999999999888888877777888999999999985444444322 2111 1111 11111
Q ss_pred CC--eEEcCHhHHHHHHHhhhhhhh
Q 042723 212 PT--YHLYTPSEVEAVINRPMSIRR 234 (262)
Q Consensus 212 k~--~~~~~~~ei~~~l~~~~~~~~ 234 (262)
.. +-.++.+-+...+..+...+.
T Consensus 122 ~r~~C~~L~~~al~~ai~~~~~~~~ 146 (150)
T COG0822 122 ARIKCSLLAWDALKAAIKDYKGKAE 146 (150)
T ss_pred ccccchhccHHHHHHHHHHhhcccc
Confidence 11 557888888888887775543
No 73
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.18 E-value=2.2e+02 Score=20.75 Aligned_cols=32 Identities=6% Similarity=0.307 Sum_probs=25.1
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHh
Q 042723 165 EGADSSLQEQYNKDLTLQEAETIALSILKQVM 196 (262)
Q Consensus 165 ~~a~~~Le~~~~~~ms~eea~~la~~al~~~~ 196 (262)
..+..+|++...+++|+++.+++=.+++..+.
T Consensus 32 erakeiLe~LndpeisL~eSvkLYkeG~~lL~ 63 (86)
T PRK14065 32 HSLEQAIDRLNDPNLSLKDGMDLYKTAMQELF 63 (86)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 46778888998999999998888777766543
No 74
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=21.12 E-value=77 Score=28.51 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=37.0
Q ss_pred EEEEcC-CC-CeEEEECCCCceeecCeEEECCC-hhhHHHHHHhhcCC-CCCHHHHHHHHHHH
Q 042723 133 IAGSDE-NG-PSLYYTDPSGTFWQCNAKAIGSG-SEGADSSLQEQYNK-DLTLQEAETIALSI 191 (262)
Q Consensus 133 iaG~d~-~g-p~Ly~iD~~G~~~~~~~~a~G~g-s~~a~~~Le~~~~~-~ms~eea~~la~~a 191 (262)
+.|.|+ +| +-.......|-+.+. ..|.. -...++-|-+.|.+ ++|+|+|++|..-=
T Consensus 77 ~LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LLsLP 136 (298)
T COG1754 77 VLGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKPETITLEKALKLLSLP 136 (298)
T ss_pred ccccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCChhhCcHHHHHHHHcCc
Confidence 446775 35 334467777776544 45554 56666667777865 79999999886543
No 75
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=20.07 E-value=2.5e+02 Score=18.10 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=22.7
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHHHHHh
Q 042723 166 GADSSLQEQYNKDLTLQEAETIALSILKQVM 196 (262)
Q Consensus 166 ~a~~~Le~~~~~~ms~eea~~la~~al~~~~ 196 (262)
.+..++++.-.+++|+++++.+-.+++..+.
T Consensus 7 ~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~ 37 (53)
T PF02609_consen 7 RLEEIVEKLESGELSLDESLKLYEEGMELIK 37 (53)
T ss_dssp HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3456677777889999999999888887654
Done!