Query 042723
Match_columns 262
No_of_seqs 124 out of 1156
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 15:20:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042723.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042723hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j2p_A Alpha-ring, proteasome 100.0 1.5E-57 5.2E-62 397.8 29.8 231 1-235 1-242 (246)
2 1iru_B 20S proteasome; cell cy 100.0 1.1E-57 3.9E-62 395.5 28.5 222 5-229 2-232 (233)
3 1yar_A Proteasome alpha subuni 100.0 7.4E-58 2.5E-62 396.7 26.8 223 1-226 1-233 (233)
4 1ryp_A 20S proteasome; multica 100.0 9.6E-58 3.3E-62 398.3 25.8 223 6-231 1-241 (243)
5 1iru_E 20S proteasome; cell cy 100.0 2E-57 7E-62 395.8 26.7 226 1-229 1-241 (241)
6 1iru_A 20S proteasome; cell cy 100.0 5.2E-57 1.8E-61 394.3 28.1 228 1-231 1-244 (246)
7 3h4p_A Proteasome subunit alph 100.0 8E-58 2.7E-62 403.3 20.9 230 3-236 7-247 (264)
8 1ryp_C 20S proteasome; multica 100.0 1.3E-55 4.5E-60 385.0 28.5 221 7-230 4-242 (244)
9 1ryp_D 20S proteasome; multica 100.0 3E-55 1E-59 382.1 30.5 222 7-233 1-238 (241)
10 3nzj_F Proteasome component C1 100.0 1.4E-55 4.9E-60 392.8 28.8 227 1-230 1-244 (288)
11 1iru_G 20S proteasome; cell cy 100.0 1.1E-55 3.8E-60 387.7 27.2 230 2-234 1-244 (254)
12 1iru_F 20S proteasome; cell cy 100.0 6.8E-56 2.3E-60 390.9 24.0 223 5-232 3-239 (263)
13 1iru_D 20S proteasome; cell cy 100.0 1.4E-55 4.9E-60 385.8 25.3 224 8-236 3-239 (248)
14 1iru_C 20S proteasome; cell cy 100.0 4.5E-55 1.5E-59 385.3 28.6 228 6-236 3-247 (261)
15 1ryp_E 20S proteasome; multica 100.0 3.5E-55 1.2E-59 381.8 26.8 222 9-233 1-239 (242)
16 1ryp_B 20S proteasome; multica 100.0 1.8E-54 6.2E-59 379.1 28.8 221 6-229 3-250 (250)
17 1ryp_F 20S proteasome; multica 100.0 1.3E-55 4.5E-60 382.5 20.6 216 5-226 2-233 (233)
18 1ryp_G 20S proteasome; multica 100.0 4.4E-54 1.5E-58 375.5 28.8 221 5-228 1-237 (244)
19 1q5q_A Proteasome alpha-type s 100.0 3.4E-46 1.2E-50 328.2 20.6 217 14-237 6-243 (259)
20 3mi0_A Proteasome subunit alph 100.0 1.6E-43 5.3E-48 309.2 24.8 208 16-230 8-238 (248)
21 3h4p_a Proteasome subunit beta 100.0 5.1E-43 1.8E-47 300.9 22.1 199 34-239 1-212 (219)
22 1yar_H Proteasome beta subunit 100.0 2.3E-42 8E-47 296.3 24.7 194 29-230 3-208 (217)
23 1j2q_H Proteasome beta subunit 100.0 1E-41 3.5E-46 289.0 23.4 189 35-230 1-201 (202)
24 3nzj_K Proteasome component PR 100.0 1E-41 3.5E-46 303.4 22.3 211 16-233 51-279 (287)
25 1q5r_H Proteasome beta-type su 100.0 1.3E-41 4.4E-46 303.6 21.7 206 27-236 58-289 (294)
26 2jay_A Proteasome; hydrolase; 100.0 1.8E-41 6.1E-46 302.4 21.2 227 5-236 22-281 (291)
27 1iru_L 20S proteasome; cell cy 100.0 7.6E-41 2.6E-45 284.1 21.0 190 35-231 1-201 (204)
28 1ryp_L 20S proteasome; multica 100.0 1.2E-40 4E-45 284.6 22.1 195 35-236 1-207 (212)
29 1q5q_H Proteasome beta-type su 100.0 3E-40 1E-44 286.5 23.1 198 35-236 1-224 (235)
30 1iru_N 20S proteasome; cell cy 100.0 1.9E-41 6.5E-46 290.9 15.0 192 28-224 2-207 (219)
31 1ryp_N 20S proteasome; multica 100.0 8.1E-41 2.8E-45 289.6 13.4 193 28-225 2-217 (233)
32 1iru_H 20S proteasome; cell cy 100.0 1.7E-39 5.7E-44 276.0 19.2 186 35-228 1-200 (205)
33 1ryp_K 20S proteasome; multica 100.0 1E-38 3.5E-43 269.7 22.8 181 34-219 1-194 (198)
34 3nzj_H Proteasome component PU 100.0 9.6E-39 3.3E-43 280.8 22.6 186 27-220 22-219 (261)
35 1ryp_H 20S proteasome; multica 100.0 7.1E-39 2.4E-43 272.2 20.6 177 28-213 3-190 (205)
36 1g0u_M Proteasome component PR 100.0 2.7E-40 9.1E-45 291.8 11.9 198 23-225 30-250 (266)
37 1iru_M 20S proteasome; cell cy 100.0 2.3E-38 7.8E-43 270.5 23.2 179 31-216 6-205 (213)
38 3unf_H Proteasome subunit beta 100.0 7.7E-39 2.6E-43 277.4 20.1 182 35-224 1-193 (234)
39 1ryp_M 20S proteasome; multica 100.0 8E-38 2.7E-42 269.0 22.9 180 30-216 5-214 (222)
40 1iru_J 20S proteasome; cell cy 100.0 1.3E-37 4.4E-42 264.4 20.9 176 31-213 5-193 (205)
41 1ryp_J 20S proteasome; multica 100.0 3.4E-37 1.2E-41 261.5 23.1 176 30-213 4-192 (204)
42 1iru_K 20S proteasome; cell cy 100.0 2.4E-37 8.1E-42 262.0 21.2 181 34-219 1-193 (201)
43 3unf_N Proteasome subunit beta 100.0 9.5E-38 3.3E-42 263.9 15.6 182 35-226 1-197 (199)
44 1ryp_I 20S proteasome; multica 100.0 1.5E-36 5E-41 261.1 22.7 179 35-221 1-191 (222)
45 1iru_I 20S proteasome; cell cy 100.0 2E-36 6.8E-41 262.3 23.2 179 35-221 1-190 (234)
46 2z3b_A ATP-dependent protease 100.0 2E-30 6.8E-35 216.1 16.3 161 32-211 3-180 (180)
47 1m4y_A ATP-dependent protease 100.0 1.3E-29 4.5E-34 209.3 16.6 157 35-210 1-171 (171)
48 1g3k_A ATP-dependent protease 100.0 3.4E-29 1.2E-33 207.4 16.2 158 35-211 1-173 (174)
49 1oey_J P40-PHOX, neutrophil cy 60.1 22 0.00076 25.9 5.7 54 180-243 34-90 (107)
50 1vd2_A Protein kinase C, IOTA 50.0 19 0.00065 25.5 4.0 57 175-236 22-81 (89)
51 2hc5_A ORF 99, hypothetical pr 47.3 28 0.00097 25.8 4.8 30 202-231 66-99 (117)
52 3jx9_A Putative phosphoheptose 35.2 20 0.00067 28.5 2.3 31 12-42 81-112 (170)
53 2yxo_A Histidinol phosphatase; 26.8 42 0.0015 27.5 3.2 31 13-43 8-38 (267)
54 1dw0_A Cytochrome C; asparagin 25.4 1E+02 0.0035 22.6 4.6 39 71-112 72-110 (112)
55 1ixs_A Holliday junction DNA h 20.1 70 0.0024 20.7 2.5 33 158-190 25-59 (62)
No 1
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=1.5e-57 Score=397.78 Aligned_cols=231 Identities=42% Similarity=0.718 Sum_probs=217.9
Q ss_pred CCCCcCCCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEec
Q 042723 1 MFFTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSG 72 (262)
Q Consensus 1 ~~~~~~~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG 72 (262)
||+++++||+++|+|||||||+|||||++|+++|+|+|||+++ +|.+++++.+++.+||++|+++++++++|
T Consensus 1 ~~~~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG 80 (246)
T 1j2p_A 1 MHLPQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSG 80 (246)
T ss_dssp ---CCTTSSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEE
T ss_pred CCccccCcCCCCceECCCCeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeE
Confidence 8888999999999999999999999999999999999999999 77777888888999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCce
Q 042723 73 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTF 152 (262)
Q Consensus 73 ~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~ 152 (262)
..+|++.+.++++.+++.|+++++++++++.+++++++++|.|+++. +.|||++++||||+| +||+||.+||.|++
T Consensus 81 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~---~~rp~~v~~lvaG~D-~gp~Ly~idp~G~~ 156 (246)
T 1j2p_A 81 LVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYG---GVRPFGVSLLIAGVN-EVPKLYETDPSGAL 156 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBT---TBCCCCEEEEEEEES-SSEEEEEECTTCCE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccc---CcccccEEEEEEEEC-CCCEEEEECCCceE
Confidence 99999999999999999999999999999999999999999999997 899999999999999 89999999999999
Q ss_pred eecCeEEECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEe-CC--eEEcCHhHHHHHHHhh
Q 042723 153 WQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA-PT--YHLYTPSEVEAVINRP 229 (262)
Q Consensus 153 ~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii~-k~--~~~~~~~ei~~~l~~~ 229 (262)
.++++.|+|+|+++++++||+.|+++|+++||++++++||..+.++..++++++|.+|+ ++ +++++++||++++..+
T Consensus 157 ~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~l~~~ei~~~~~~~ 236 (246)
T 1j2p_A 157 LEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERA 236 (246)
T ss_dssp EEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEETTTCCCEECCHHHHHHHHHHH
T ss_pred EeeeEEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCceEECCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999985589999999999 64 9999999999999999
Q ss_pred hhhhhh
Q 042723 230 MSIRRK 235 (262)
Q Consensus 230 ~~~~~~ 235 (262)
.++++.
T Consensus 237 ~~~~~~ 242 (246)
T 1j2p_A 237 NERIRE 242 (246)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 2
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=1.1e-57 Score=395.46 Aligned_cols=222 Identities=34% Similarity=0.578 Sum_probs=215.5
Q ss_pred cCCCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecCHHH
Q 042723 5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIAD 76 (262)
Q Consensus 5 ~~~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D 76 (262)
+++||+++|+|||||||+|||||++|+++|+|+|||+++ +|.+++++.+++.+||++|+++++++++|..+|
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (233)
T 1iru_B 2 ERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPD 81 (233)
T ss_dssp CCCCCSBSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHH
T ss_pred CCCccCCceeECCCCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccHH
Confidence 578999999999999999999999999999999999999 777788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecC
Q 042723 77 ARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCN 156 (262)
Q Consensus 77 ~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~ 156 (262)
++.+.++++.+++.|+++++++++++.+++++++++|.|+++. ++|||++++||||+|++||+||.+||.|++.+++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~---~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~ 158 (233)
T 1iru_B 82 YRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSG---GVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWK 158 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSB---TBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcC---CCCCcEEEEEEEEEeCCCCeEEEECCCCCEEEee
Confidence 9999999999999999999999999999999999999999997 8999999999999998899999999999999999
Q ss_pred eEEECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC-eEEcCHhHHHHHHHhh
Q 042723 157 AKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT-YHLYTPSEVEAVINRP 229 (262)
Q Consensus 157 ~~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii~k~-~~~~~~~ei~~~l~~~ 229 (262)
++|+|+|+++++++||+.|+++||++||++++++||..+.++|.++++++|.+|+++ +++++++||+++++.+
T Consensus 159 ~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~sg~~i~v~vi~~~g~~~l~~~ei~~~~~~~ 232 (233)
T 1iru_B 159 ATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVKDYLAAI 232 (233)
T ss_dssp EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSCCCSSSEEEEEEETTEEEECCHHHHHHHHTTC
T ss_pred EEEECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCEEECCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999988999999999999 9999999999999865
No 3
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=7.4e-58 Score=396.65 Aligned_cols=223 Identities=40% Similarity=0.663 Sum_probs=204.5
Q ss_pred CCCCcCCCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEec
Q 042723 1 MFFTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSG 72 (262)
Q Consensus 1 ~~~~~~~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG 72 (262)
|++++++||+++|+|||||||+|||||++|+++|+|+|||+++ +|.+.+++.+++.+||++|+++++++++|
T Consensus 1 ~~m~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG 80 (233)
T 1yar_A 1 MQQGQMAYSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSG 80 (233)
T ss_dssp ------------CCCCTTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEE
T ss_pred CCcccccCCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEee
Confidence 7778889999999999999999999999999999999999999 77777888889999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCce
Q 042723 73 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTF 152 (262)
Q Consensus 73 ~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~ 152 (262)
..+|++.+.++++.+++.|+++++++++++.+++++++++|.|+++. ++|||++++||||+|++||+||.+||.|++
T Consensus 81 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~---~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~ 157 (233)
T 1yar_A 81 LVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYG---GVRPYGVSLIFAGIDQIGPRLFDCDPAGTI 157 (233)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBT---TBCCCCEEEEEEEECSSCEEEEEECTTCCE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcC---CcCcceEEEEEEEEeCCCCEEEEECCCCCE
Confidence 99999999999999999999999999999999999999999999987 889999999999999989999999999999
Q ss_pred eecCeEEECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC--eEEcCHhHHHHHH
Q 042723 153 WQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVI 226 (262)
Q Consensus 153 ~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii~k~--~~~~~~~ei~~~l 226 (262)
.+++++|+|+|+++++++||+.|+++|+++||++++++||..+.++|+++++++|.+|+++ +++++++||+++|
T Consensus 158 ~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~s~~~i~v~vi~~~~~~~~~~~~ei~~~l 233 (233)
T 1yar_A 158 NEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233 (233)
T ss_dssp EEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSCCCCCCEEEEEETTSCCEECCHHHHHTTC
T ss_pred EeeeEEEEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCEEECCHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999988999999999998 9999999998764
No 4
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=9.6e-58 Score=398.32 Aligned_cols=223 Identities=27% Similarity=0.513 Sum_probs=215.7
Q ss_pred CCCCCCccccCCCCCchhhhhHHHHhcc-CCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecCHHH
Q 042723 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIAD 76 (262)
Q Consensus 6 ~~yd~~~~~fsp~G~~~QieyA~kav~~-G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D 76 (262)
++||+++|+|||||||+|||||+||+++ |+|+|||+++ +|.+++++.+++.+||++|+++++++++|..+|
T Consensus 1 ~~yd~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 80 (243)
T 1ryp_A 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD 80 (243)
T ss_dssp CGGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHH
T ss_pred CCCCCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHH
Confidence 4799999999999999999999999999 9999999999 777788888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcC-CCCeEEEECCCCceeec
Q 042723 77 ARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQC 155 (262)
Q Consensus 77 ~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~-~gp~Ly~iD~~G~~~~~ 155 (262)
++.+++.++.+++.|+++++++++++.++++|++++|.|++++ ++|||+|++||||||+ +||+||++||+|++.++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~---~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~ 157 (243)
T 1ryp_A 81 ARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRA---YMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGY 157 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBT---TSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccC---CccccceEEEEEEEcCCCCcEEEEEcCCCCEEEE
Confidence 9999999999999999999999999999999999999999987 8899999999999997 68999999999999999
Q ss_pred CeEEECCChhhHHHHHHhhcCC-------CCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC-eEEcCHhHHHHHHH
Q 042723 156 NAKAIGSGSEGADSSLQEQYNK-------DLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT-YHLYTPSEVEAVIN 227 (262)
Q Consensus 156 ~~~a~G~gs~~a~~~Le~~~~~-------~ms~eea~~la~~al~~~~~~d~s~~~iev~ii~k~-~~~~~~~ei~~~l~ 227 (262)
+++|+|+|++.++++||+.|++ +|+++||++++++||..+.++|.++++++|++|+++ +++++++||++++.
T Consensus 158 ~~~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd~s~~~iev~vi~~~g~~~l~~~ei~~~~~ 237 (243)
T 1ryp_A 158 KATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDKFFTLSAENIEERLV 237 (243)
T ss_dssp SEEEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCCCCTTSEEEEEEETTEEEECCHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCeEECCHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999988999999999999 99999999999999
Q ss_pred hhhh
Q 042723 228 RPMS 231 (262)
Q Consensus 228 ~~~~ 231 (262)
.+.+
T Consensus 238 ~~~~ 241 (243)
T 1ryp_A 238 AIAE 241 (243)
T ss_dssp HHTT
T ss_pred Hhhc
Confidence 8853
No 5
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=2e-57 Score=395.79 Aligned_cols=226 Identities=69% Similarity=1.060 Sum_probs=210.2
Q ss_pred CCCCcCCCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEec
Q 042723 1 MFFTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSG 72 (262)
Q Consensus 1 ~~~~~~~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG 72 (262)
||+++++||+++|+|||||||+|||||++|+++|+|+|||+++ +|.+.++..+++.+||++|+++++++++|
T Consensus 1 ~~m~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG 80 (241)
T 1iru_E 1 MFLTRSEYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSG 80 (241)
T ss_dssp -------CCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEE
T ss_pred CCCccCCCCCCCceECCCCccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEee
Confidence 7788889999999999999999999999999999999999999 77777666688999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCC-----CccceEEEEEEEEcCCCCeEEEEC
Q 042723 73 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESM-----SRPFGVSLLIAGSDENGPSLYYTD 147 (262)
Q Consensus 73 ~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~-----~rP~~vs~iiaG~d~~gp~Ly~iD 147 (262)
..+|++.+.++++.+++.|+++++++++++.+++++++++|.|+++. + .|||++++||||+|++||+||.+|
T Consensus 81 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~---~~~~l~~rp~~v~~lvaG~D~~gp~Ly~id 157 (241)
T 1iru_E 81 LIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEED---ADPGAMSRPFGVALLFGGVDEKGPQLFHMD 157 (241)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTT---CCSSCBSSCCCEEEEEEEEETTEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccc---cccccccccceEEEEEEEEeCCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999886 6 899999999999997789999999
Q ss_pred CCCceeecCeEEECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC--eEEcCHhHHHHH
Q 042723 148 PSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAV 225 (262)
Q Consensus 148 ~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii~k~--~~~~~~~ei~~~ 225 (262)
|.|++.++++.|+|+|+++++++||+.|+++|+++||++++++||..+.++..++++++|.+|+++ +++++++|++++
T Consensus 158 p~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~l~~~ei~~~ 237 (241)
T 1iru_E 158 PSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEV 237 (241)
T ss_dssp TTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEECSSSCCEECCHHHHHHH
T ss_pred CCCcEEecceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCCeEECCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998668999999999999 899999999999
Q ss_pred HHhh
Q 042723 226 INRP 229 (262)
Q Consensus 226 l~~~ 229 (262)
+.++
T Consensus 238 ~~~~ 241 (241)
T 1iru_E 238 IKDI 241 (241)
T ss_dssp HTTC
T ss_pred HHhC
Confidence 9764
No 6
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=5.2e-57 Score=394.34 Aligned_cols=228 Identities=32% Similarity=0.593 Sum_probs=217.2
Q ss_pred CCCCc-CCCCCCccccCCCCCchhhhhHHHHhcc-CCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEE
Q 042723 1 MFFTR-TEYDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAM 70 (262)
Q Consensus 1 ~~~~~-~~yd~~~~~fsp~G~~~QieyA~kav~~-G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~ 70 (262)
||+++ ++||+++|+|||||||+|||||++|+++ |+|+|||+++ +|.+++++.+++.+||++|++++++++
T Consensus 1 ~~m~~~~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~ 80 (246)
T 1iru_A 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVM 80 (246)
T ss_dssp -CCSCCCTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEE
T ss_pred CCCCccCCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEE
Confidence 66554 7899999999999999999999999999 9999999999 777788888899999999999999999
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcC-CCCeEEEECCC
Q 042723 71 SGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPS 149 (262)
Q Consensus 71 sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~-~gp~Ly~iD~~ 149 (262)
+|..+|++.+.++++.+++.|+++++++++++.+++++++++|.|+++. +.|||+|++||||+|+ +||+||.+||+
T Consensus 81 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~---~~rp~~v~~lvaG~D~~~gp~Ly~idp~ 157 (246)
T 1iru_A 81 TGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNA---EMRPLGCCMILIGIDEEQGPQVYKCDPA 157 (246)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBS---SBCCCSEEEEEEEEETTTEEEEEEECTT
T ss_pred eccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCC---CCCCcceEEEEEEEeCCCCeEEEEEcCC
Confidence 9999999999999999999999999999999999999999999999887 8899999999999997 68999999999
Q ss_pred CceeecCeEEECCChhhHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC---eEEcCHhHHHH
Q 042723 150 GTFWQCNAKAIGSGSEGADSSLQEQYNK--DLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSEVEA 224 (262)
Q Consensus 150 G~~~~~~~~a~G~gs~~a~~~Le~~~~~--~ms~eea~~la~~al~~~~~~d~s~~~iev~ii~k~---~~~~~~~ei~~ 224 (262)
|++.+++++|+|+|+++++++||+.|++ +|+++||++++++||..+.++|.++++++|.+|+++ +++++++||++
T Consensus 158 G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~sg~~i~v~vi~~~g~~~~~l~~~ei~~ 237 (246)
T 1iru_A 158 GYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDA 237 (246)
T ss_dssp SCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEETTEEEEEECCHHHHHH
T ss_pred eeEEEeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCeEEECCHHHHHH
Confidence 9999999999999999999999999999 999999999999999999999988999999999999 79999999999
Q ss_pred HHHhhhh
Q 042723 225 VINRPMS 231 (262)
Q Consensus 225 ~l~~~~~ 231 (262)
++..+.+
T Consensus 238 ~~~~~~~ 244 (246)
T 1iru_A 238 HLVALAE 244 (246)
T ss_dssp HHHHHHT
T ss_pred HHHHhhc
Confidence 9998853
No 7
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=8e-58 Score=403.27 Aligned_cols=230 Identities=41% Similarity=0.696 Sum_probs=212.2
Q ss_pred CCcCCCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecCH
Q 042723 3 FTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGLI 74 (262)
Q Consensus 3 ~~~~~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~ 74 (262)
+.+++||+++|+|||||||+|||||++|+++|+|+|||+++ +|.+++++.+++.+||++|+++++++++|..
T Consensus 7 ~~~~~yd~~~t~fSp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~aG~~ 86 (264)
T 3h4p_A 7 VPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLV 86 (264)
T ss_dssp ---------CCCCCSSSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEEEECS
T ss_pred CCccccCCCcceECCCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEeccch
Confidence 44688999999999999999999999999999999999999 7777788888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceee
Q 042723 75 ADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQ 154 (262)
Q Consensus 75 ~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~ 154 (262)
+|++.|+++++.+++.|+++++++++++.++++|++++|.|+++. ++|||+|++||||+|++||+||++||.|++.+
T Consensus 87 aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~---~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~~~~ 163 (264)
T 3h4p_A 87 ADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHG---GVRPFGVSLLIAGIDKNEARLFETDPSGALIE 163 (264)
T ss_dssp HHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBS---SCCCCSEEEEEEEEETTEEEEEEECTTCCCEE
T ss_pred HHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhcc---CCCCeeEEEEEEEEeCCcCEEEEECCCceEEe
Confidence 999999999999999999999999999999999999999999987 89999999999999988999999999999999
Q ss_pred cCeEEECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC---eEEcCHhHHHHHHHhhhh
Q 042723 155 CNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSEVEAVINRPMS 231 (262)
Q Consensus 155 ~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii~k~---~~~~~~~ei~~~l~~~~~ 231 (262)
++++|+|+|+.+++++||+.|+++|+++||++++++||..+.++ .++++++|++|+++ +++++++||++++..+..
T Consensus 164 ~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~-~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~~~~~ 242 (264)
T 3h4p_A 164 YKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANED-IKPENVDVCIITVKDAQFKKIPVEEIKKLIEKVKK 242 (264)
T ss_dssp ESEEEESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS-CCTTSEEEEEEETTTTEEEECCTTTTGGGTTTTTT
T ss_pred cCeEEECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc-cCCCeEEEEEEEeCCCcEEECCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988 88999999999975 999999999999999986
Q ss_pred hhhhc
Q 042723 232 IRRKS 236 (262)
Q Consensus 232 ~~~~~ 236 (262)
..+.+
T Consensus 243 ~~~~~ 247 (264)
T 3h4p_A 243 KLNEE 247 (264)
T ss_dssp SSSCC
T ss_pred hhhcc
Confidence 65444
No 8
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=1.3e-55 Score=384.99 Aligned_cols=221 Identities=34% Similarity=0.604 Sum_probs=211.7
Q ss_pred CCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcC-CCccCceEEEcCcEEEEEecCHHHH
Q 042723 7 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLE-PSSVEKIKEIDEHIGCAMSGLIADA 77 (262)
Q Consensus 7 ~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~-~~~~~Ki~~I~~~i~~~~sG~~~D~ 77 (262)
+||+++|+|||||||+|||||++|+++|+|+|||+++ +|.+.++.. +++.+||++|+++++++++|..+|+
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 83 (244)
T 1ryp_C 4 RYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADA 83 (244)
T ss_dssp GGCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHH
T ss_pred ccCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHH
Confidence 7999999999999999999999999999999999999 777776665 8899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEc-CCCCeEEEECCCCceeecC
Q 042723 78 RTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCN 156 (262)
Q Consensus 78 ~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d-~~gp~Ly~iD~~G~~~~~~ 156 (262)
+.+.++++.+++.|+++++++++++.+++++++++|.|+++. ++|||++++||||+| ++||+||.+||.|++.+++
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~---~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~ 160 (244)
T 1ryp_C 84 EILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHG---GLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWK 160 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBS---SCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBS
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccC---CccceEEEEEEEEEcCCCCCEEEEECCCccEEeee
Confidence 999999999999999999999999999999999999999987 889999999999999 6789999999999999999
Q ss_pred eEEECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEe--CC-----eEEcCHhHHHHHHHh
Q 042723 157 AKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE-KVTPNNVDIARVA--PT-----YHLYTPSEVEAVINR 228 (262)
Q Consensus 157 ~~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-d~s~~~iev~ii~--k~-----~~~~~~~ei~~~l~~ 228 (262)
++|+|+|+++++++||+.|+++|+++||++++++||..+.++ +.++++++|.+|+ ++ +++++++||++++..
T Consensus 161 ~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~~ 240 (244)
T 1ryp_C 161 AISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVK 240 (244)
T ss_dssp EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 5689999999999 76 689999999999988
Q ss_pred hh
Q 042723 229 PM 230 (262)
Q Consensus 229 ~~ 230 (262)
++
T Consensus 241 ~~ 242 (244)
T 1ryp_C 241 TG 242 (244)
T ss_dssp HT
T ss_pred hh
Confidence 75
No 9
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=3e-55 Score=382.14 Aligned_cols=222 Identities=37% Similarity=0.613 Sum_probs=210.7
Q ss_pred CCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcC-CCccCceEEEcCcEEEEEecCHHHH
Q 042723 7 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLE-PSSVEKIKEIDEHIGCAMSGLIADA 77 (262)
Q Consensus 7 ~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~-~~~~~Ki~~I~~~i~~~~sG~~~D~ 77 (262)
+||+++|+|||||||+|||||+||+++|+|+|||+++ +|.+.++.. +++.+||++|+++++++++|..+|+
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADS 80 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHH
Confidence 5999999999999999999999999999999999999 777765554 4489999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcC--CCCeEEEECCCCceeec
Q 042723 78 RTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE--NGPSLYYTDPSGTFWQC 155 (262)
Q Consensus 78 ~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~--~gp~Ly~iD~~G~~~~~ 155 (262)
+.+.++++.+++.|+++++++++++.++++|++++|.|+++. ++|||++++||||+|+ +||+||.+||.|++.++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~---~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~ 157 (241)
T 1ryp_D 81 RILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSG---GVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSW 157 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSST---TBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCC---CCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEe
Confidence 999999999999999999999999999999999999999987 8899999999999998 78999999999999999
Q ss_pred CeEEECCChhhHHHHHHhhc---CCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC--eEEcCHhHHHHHHHhhh
Q 042723 156 NAKAIGSGSEGADSSLQEQY---NKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVINRPM 230 (262)
Q Consensus 156 ~~~a~G~gs~~a~~~Le~~~---~~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii~k~--~~~~~~~ei~~~l~~~~ 230 (262)
+++|+|+|+++++++||+.| +++|+++||++++++||..+.+ .++++++|.+|+++ +++++++||++++..+.
T Consensus 158 ~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~--~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~~~~ 235 (241)
T 1ryp_D 158 SAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ--TGAKNIEITVVKPDSDIVALSSEEINQYVTQIE 235 (241)
T ss_dssp SEEEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC--SCSTTEEEEEEETTTEEEECCHHHHHHHHHHHT
T ss_pred eeEEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc--CCCCcEEEEEEECCCcEEECCHHHHHHHHHHHh
Confidence 99999999999999999999 9999999999999999999987 78999999999998 99999999999999986
Q ss_pred hhh
Q 042723 231 SIR 233 (262)
Q Consensus 231 ~~~ 233 (262)
+..
T Consensus 236 ~~~ 238 (241)
T 1ryp_D 236 QEK 238 (241)
T ss_dssp HHH
T ss_pred hhh
Confidence 443
No 10
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=1.4e-55 Score=392.77 Aligned_cols=227 Identities=34% Similarity=0.545 Sum_probs=210.0
Q ss_pred CCCCcCCCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEec
Q 042723 1 MFFTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSG 72 (262)
Q Consensus 1 ~~~~~~~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG 72 (262)
|++++++||+++|+|||+|||+|||||+||+++|+|+|||+++ +|.+.++...++.+||++|+++++++++|
T Consensus 1 m~~~~~~yd~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG 80 (288)
T 3nzj_F 1 MTSIGTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSG 80 (288)
T ss_dssp ----CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEE
T ss_pred CCCCcCCccCCcccCCCCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecC
Confidence 8999999999999999999999999999999999999999999 77777776666889999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCce
Q 042723 73 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTF 152 (262)
Q Consensus 73 ~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~ 152 (262)
..+|++.|+++++.+++.|+++++++++++.++++|++++|.|+++. ++|||+|++||||||++||+||++||.|++
T Consensus 81 ~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~---~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~ 157 (288)
T 3nzj_F 81 LIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN---SVRPFGVSTIFGGVDKNGAHLYMLEPSGSY 157 (288)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCT---TBCCCCEEEEEEEEETTEEEEEEECTTSCE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhc---cCCCceEEEEEEEEeCCCCEEEEECCCCCE
Confidence 99999999999999999999999999999999999999999999987 899999999999999999999999999999
Q ss_pred eecCeEEECCChhhHHHHHHhh---cCCCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeC-C----eEEcCHhHHH
Q 042723 153 WQCNAKAIGSGSEGADSSLQEQ---YNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAP-T----YHLYTPSEVE 223 (262)
Q Consensus 153 ~~~~~~a~G~gs~~a~~~Le~~---~~~~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k-~----~~~~~~~ei~ 223 (262)
.+++++|+|+|+++++++||+. |+++|+++||++++++||..+.+++. +++.+||.+|++ + ++.++.++++
T Consensus 158 ~~~~~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~ 237 (288)
T 3nzj_F 158 WGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQ 237 (288)
T ss_dssp EEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHH
T ss_pred EEcCEEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHH
Confidence 9999999999999999999999 99999999999999999999999976 788999999999 3 6788888877
Q ss_pred HHHHhhh
Q 042723 224 AVINRPM 230 (262)
Q Consensus 224 ~~l~~~~ 230 (262)
+..+.-+
T Consensus 238 ~~~~~~~ 244 (288)
T 3nzj_F 238 EAIDFAQ 244 (288)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6654443
No 11
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=1.1e-55 Score=387.73 Aligned_cols=230 Identities=30% Similarity=0.454 Sum_probs=217.2
Q ss_pred CCCcCCCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecC
Q 042723 2 FFTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGL 73 (262)
Q Consensus 2 ~~~~~~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~ 73 (262)
+++.++||+++|+|||||||+|||||+||+++|+|+|||+++ +|.+.++...++.+||++|+++++++++|.
T Consensus 1 ~~~~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~ 80 (254)
T 1iru_G 1 SSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGL 80 (254)
T ss_dssp CCCCSSTTSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEEC
T ss_pred CCcccccCCCCccCCcCCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecC
Confidence 467889999999999999999999999999999999999999 777776666688999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEc-CCCCeEEEECCCCce
Q 042723 74 IADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTF 152 (262)
Q Consensus 74 ~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d-~~gp~Ly~iD~~G~~ 152 (262)
.+|++.|.++++.+++.|+++++++++++.+++++++++|.|+++. ++|||+|++|||||| .+||+||++||.|++
T Consensus 81 ~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~---~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~ 157 (254)
T 1iru_G 81 LADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYS---AVRPFGCSFMLGSYSVNDGAQLYMIDPSGVS 157 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBS---SBCCCSEEEEEEEEETTTEEEEEEECTTCCE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccc---ccccceEEEEEEEEeCCCCcEEEEEcCCCCE
Confidence 9999999999999999999999999999999999999999999987 899999999999999 668999999999999
Q ss_pred eecCeEEECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC----eEEcCHhHHHHHHH
Q 042723 153 WQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT----YHLYTPSEVEAVIN 227 (262)
Q Consensus 153 ~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~----~~~~~~~ei~~~l~ 227 (262)
.+++++|+|+|+++++++||+.|+++|+++||++++++||+.+.+++. ++++++|++|+++ +++++++|++++++
T Consensus 158 ~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~ 237 (254)
T 1iru_G 158 YGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEK 237 (254)
T ss_dssp EEBSEEEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHH
T ss_pred EeeeeEEecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988876 7889999999976 99999999999999
Q ss_pred hhhhhhh
Q 042723 228 RPMSIRR 234 (262)
Q Consensus 228 ~~~~~~~ 234 (262)
.++..-+
T Consensus 238 ~~~~~~~ 244 (254)
T 1iru_G 238 YAKESLK 244 (254)
T ss_dssp HHHHHHC
T ss_pred HHHHhhh
Confidence 8865444
No 12
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=6.8e-56 Score=390.89 Aligned_cols=223 Identities=35% Similarity=0.596 Sum_probs=212.4
Q ss_pred cCCCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecCHHH
Q 042723 5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIAD 76 (262)
Q Consensus 5 ~~~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D 76 (262)
+++||+++|+|||||||+|||||+||+++|+|+|||+++ +|.+.++. ++.+||++|+++++++++|..+|
T Consensus 3 ~~~yd~~~t~fsP~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~--~~~~KI~~i~~~i~~~~aG~~aD 80 (263)
T 1iru_F 3 RNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA--AHQKKILHVDNHIGISIAGLTAD 80 (263)
T ss_dssp -CTTTSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHH
T ss_pred cCCCCCCCccCCCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccccc--cchhcEEEEcCCEEEEEeCCHHH
Confidence 689999999999999999999999999999999999999 67776663 47899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecC
Q 042723 77 ARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCN 156 (262)
Q Consensus 77 ~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~ 156 (262)
++.|.++++.+++.|+++++++++++.+++++++++|.|+++. ++|||+|++||||||++||+||++||+|++.+++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~---~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~ 157 (263)
T 1iru_F 81 ARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY---GRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCR 157 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBT---TCCCCCEEEEEEEEETTEEEEEEECSSSCEEEES
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhccc---ccccceEEEEEEEEcCCCCEEEEECCCCCEEEee
Confidence 9999999999999999999999999999999999999999887 8899999999999999899999999999999999
Q ss_pred eEEECCChhhHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHhhcc--CCCCcEEEEEEeCC--eEEcCHhHHHHHHHhhh
Q 042723 157 AKAIGSGSEGADSSLQEQYNK--DLTLQEAETIALSILKQVMEEK--VTPNNVDIARVAPT--YHLYTPSEVEAVINRPM 230 (262)
Q Consensus 157 ~~a~G~gs~~a~~~Le~~~~~--~ms~eea~~la~~al~~~~~~d--~s~~~iev~ii~k~--~~~~~~~ei~~~l~~~~ 230 (262)
++|+|+|+++++++||+.|++ +|+++||++++++||..+.++| .++++++|++|+++ +++++++||++++..+.
T Consensus 158 ~~aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~~ei~~~~~~~~ 237 (263)
T 1iru_F 158 AMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLE 237 (263)
T ss_dssp EEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGHHHHTTCC
T ss_pred EEEcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCHHHHHHHHHHHh
Confidence 999999999999999999998 9999999999999999999998 58999999999999 99999999999999986
Q ss_pred hh
Q 042723 231 SI 232 (262)
Q Consensus 231 ~~ 232 (262)
..
T Consensus 238 ~~ 239 (263)
T 1iru_F 238 ER 239 (263)
T ss_dssp CC
T ss_pred cc
Confidence 33
No 13
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=1.4e-55 Score=385.76 Aligned_cols=224 Identities=37% Similarity=0.632 Sum_probs=213.9
Q ss_pred CCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecCHHHHHH
Q 042723 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIADART 79 (262)
Q Consensus 8 yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~ 79 (262)
||+.+|+|||||||+|||||++|+++|+|+|||+++ +|.+.+++.+++.+||++|+++++++++|..+|++.
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~ 82 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARI 82 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHHH
T ss_pred ccCCCceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHHH
Confidence 999999999999999999999999999999999999 777777888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEc-CCCCeEEEECCCCceeecCeE
Q 042723 80 LVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAK 158 (262)
Q Consensus 80 l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d-~~gp~Ly~iD~~G~~~~~~~~ 158 (262)
+.++++.+++.|+++++++++++.+++++++++|.|+++. ++|||+|++||||+| ++||+||.+||.|++.+++++
T Consensus 83 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~---~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 159 (248)
T 1iru_D 83 VINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN---GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKAN 159 (248)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBT---TBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccC---CcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEE
Confidence 9999999999999999999999999999999999999987 889999999999999 668999999999999999999
Q ss_pred EECCChhhHHHHHHhhcCCCC--CHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC--eEEcCHhHHHHHHHhhhhhhh
Q 042723 159 AIGSGSEGADSSLQEQYNKDL--TLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVINRPMSIRR 234 (262)
Q Consensus 159 a~G~gs~~a~~~Le~~~~~~m--s~eea~~la~~al~~~~~~d~s~~~iev~ii~k~--~~~~~~~ei~~~l~~~~~~~~ 234 (262)
|+|+|+++++++||+.|+++| +++||++++++||..+.+ .++++++|.+|+++ +++++++||++++..+.....
T Consensus 160 aiG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~--~sg~~i~v~vi~~~g~~~~l~~~ei~~~~~~~~~~~~ 237 (248)
T 1iru_D 160 AIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ--SGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKE 237 (248)
T ss_dssp EESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC--TTSTTCCEEEEESSSCEECCCHHHHHHHTTTTTTTTT
T ss_pred EECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc--CCCCcEEEEEEECCCcEEECCHHHHHHHHHHHHhcch
Confidence 999999999999999999999 999999999999999987 57899999999998 999999999999999976554
Q ss_pred hc
Q 042723 235 KS 236 (262)
Q Consensus 235 ~~ 236 (262)
.+
T Consensus 238 ~~ 239 (248)
T 1iru_D 238 EN 239 (248)
T ss_dssp TT
T ss_pred hh
Confidence 44
No 14
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=4.5e-55 Score=385.31 Aligned_cols=228 Identities=36% Similarity=0.583 Sum_probs=214.1
Q ss_pred CCCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCc-CCCccCceEEEcCcEEEEEecCHHH
Q 042723 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLL-EPSSVEKIKEIDEHIGCAMSGLIAD 76 (262)
Q Consensus 6 ~~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~-~~~~~~Ki~~I~~~i~~~~sG~~~D 76 (262)
++||+++|+|||||||+|||||++|+++|+|+|||+++ +|.+.++. .+++.+||++|+++++++++|..+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD 82 (261)
T 1iru_C 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSD 82 (261)
T ss_dssp TTTCCCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHH
T ss_pred CccCCCCccCCCCCeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHH
Confidence 48999999999999999999999999999999999999 67766554 4555899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcC-CCCeEEEECCCCceeec
Q 042723 77 ARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQC 155 (262)
Q Consensus 77 ~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~-~gp~Ly~iD~~G~~~~~ 155 (262)
++.|+++++.+++.|+++++++++++.+++++++++|.|+++. ++|||+|++||||+|+ +||+||.+||+|++.++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~---~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 159 (261)
T 1iru_C 83 ANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFG---GKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGW 159 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBS---SCCCCCEEEEEEEEETTTEEEEEEEETTTEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcccc---CcCcceEEEEEEEEeCCCCcEEEEECCCceEEee
Confidence 9999999999999999999999999999999999999999987 8899999999999996 68999999999999999
Q ss_pred CeEEECCChhhHHHHHHhhcCC-CCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC-----eEEcCHhHHHHHHHh
Q 042723 156 NAKAIGSGSEGADSSLQEQYNK-DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-----YHLYTPSEVEAVINR 228 (262)
Q Consensus 156 ~~~a~G~gs~~a~~~Le~~~~~-~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~-----~~~~~~~ei~~~l~~ 228 (262)
+++|+|+|+.+++++||+.|++ +||++||++++++||..+.++|. ++++++|.+|+++ +++++++||++++..
T Consensus 160 ~~~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~ 239 (261)
T 1iru_C 160 KATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKK 239 (261)
T ss_dssp SEEEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHH
T ss_pred eeEEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHH
Confidence 9999999999999999999999 99999999999999999999986 8899999999987 689999999999999
Q ss_pred hhhhhhhc
Q 042723 229 PMSIRRKS 236 (262)
Q Consensus 229 ~~~~~~~~ 236 (262)
+.+++..+
T Consensus 240 ~~~~~~~~ 247 (261)
T 1iru_C 240 HEEEEAKA 247 (261)
T ss_dssp HHTTTTTT
T ss_pred HHhchhhh
Confidence 97655544
No 15
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=3.5e-55 Score=381.85 Aligned_cols=222 Identities=59% Similarity=0.941 Sum_probs=211.6
Q ss_pred CCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecCHHHHHHH
Q 042723 9 DRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIADARTL 80 (262)
Q Consensus 9 d~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l 80 (262)
|+++|+|||||||+|||||++|+++|+|+|||+++ +|.+.++..+++.+||++|+++++++++|..+|++.+
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 80 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSM 80 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHHH
Confidence 78999999999999999999999999999999999 7777766668889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCC------CccceEEEEEEEEc-CCCCeEEEECCCCcee
Q 042723 81 VEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESM------SRPFGVSLLIAGSD-ENGPSLYYTDPSGTFW 153 (262)
Q Consensus 81 ~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~------~rP~~vs~iiaG~d-~~gp~Ly~iD~~G~~~ 153 (262)
.++++.+++.|+++++++++++.+++++++++|.|+++. + .|||++++||||+| .+||+||.+||.|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~---~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~ 157 (242)
T 1ryp_E 81 IEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGA---SGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFY 157 (242)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSC---TTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEE
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcccc---CcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEe
Confidence 999999999999999999999999999999999999887 6 89999999999999 5689999999999999
Q ss_pred ecCeEEECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC--eEEcCHhHHHHHHHhhhh
Q 042723 154 QCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVINRPMS 231 (262)
Q Consensus 154 ~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii~k~--~~~~~~~ei~~~l~~~~~ 231 (262)
++++.|+|+|+.+++++||+.|+++||++||++++++||..+.+++.++++++|.+|+++ +++++++||++++..+.+
T Consensus 158 ~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~ei~~~~~~~~~ 237 (242)
T 1ryp_E 158 RYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELIKELKE 237 (242)
T ss_dssp EBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEEETTTEEEECCHHHHHHHHHHHHH
T ss_pred ccCEEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCeEECCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999998668999999999999 899999999999999865
Q ss_pred hh
Q 042723 232 IR 233 (262)
Q Consensus 232 ~~ 233 (262)
+.
T Consensus 238 ~~ 239 (242)
T 1ryp_E 238 KE 239 (242)
T ss_dssp HH
T ss_pred hh
Confidence 44
No 16
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.8e-54 Score=379.15 Aligned_cols=221 Identities=34% Similarity=0.569 Sum_probs=211.5
Q ss_pred CCCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecCHHHH
Q 042723 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIADA 77 (262)
Q Consensus 6 ~~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~ 77 (262)
++||+++|+|||||||+|||||++|+++|+|+|||+++ +|.+++++.+++.+||++|+++++++++|..+|+
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 82 (250)
T 1ryp_B 3 DRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDY 82 (250)
T ss_dssp CCCCSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHHH
T ss_pred CcccCCceeECCCCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHHH
Confidence 38999999999999999999999999999999999999 7777888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcC-CCCeEEEECCCCceeec
Q 042723 78 RTLVEHARVETQN-HRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQC 155 (262)
Q Consensus 78 ~~l~~~~r~~~~~-~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~-~gp~Ly~iD~~G~~~~~ 155 (262)
+.+.++++.+++. |+..++.+++++.+++.++++++.|++.. ++|||++++||||||+ +||+||.+||.|++.++
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~---~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 159 (250)
T 1ryp_B 83 RVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSG---GVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPW 159 (250)
T ss_dssp HHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSB---TBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC---CcccceEEEEEEEEcCCCCcEEEEECCCCCEEee
Confidence 9999999999999 99999999999999999999999999987 8899999999999997 57999999999999999
Q ss_pred CeEEECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC-----------------eEEcC
Q 042723 156 NAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT-----------------YHLYT 218 (262)
Q Consensus 156 ~~~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii~k~-----------------~~~~~ 218 (262)
+++|+|+|+++++++||+.|+++|++|||++++++||..+.+++.++++++|.+|+++ |++++
T Consensus 160 ~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~ 239 (250)
T 1ryp_B 160 KATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLT 239 (250)
T ss_dssp SEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSCCSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEECC
T ss_pred ceeEecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhccccCCCCEEEEEEEccccccccccccccCCCCCeEECC
Confidence 9999999999999999999999999999999999999999998889999999999972 89999
Q ss_pred HhHHHHHHHhh
Q 042723 219 PSEVEAVINRP 229 (262)
Q Consensus 219 ~~ei~~~l~~~ 229 (262)
++||++++.++
T Consensus 240 ~~ei~~~l~~~ 250 (250)
T 1ryp_B 240 SQEINDRLEAL 250 (250)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhC
Confidence 99999999754
No 17
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1.3e-55 Score=382.54 Aligned_cols=216 Identities=36% Similarity=0.566 Sum_probs=205.3
Q ss_pred cCCCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecCHHH
Q 042723 5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIAD 76 (262)
Q Consensus 5 ~~~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D 76 (262)
+++||+++|+|||||||+|||||++|+++|+|+|||+++ +|.+.++. ++.+||++|+++++++++|..+|
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~--~~~~Ki~~i~~~i~~~~aG~~aD 79 (233)
T 1ryp_F 2 RNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELS--SYQKKIIKCDEHMGLSLAGLAPD 79 (233)
T ss_dssp HHHHSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHH
T ss_pred CCcccCCCccCCCCCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccccc--cccCcEEEEcCCEEEEEEechHH
Confidence 468999999999999999999999999999999999999 67776664 47799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecC
Q 042723 77 ARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCN 156 (262)
Q Consensus 77 ~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~ 156 (262)
++.+.+.++.+++.|++++++++|++.+++++++++|.|+++. +.|||+|++||||||++||+||++||+|++.+++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~---~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~ 156 (233)
T 1ryp_F 80 ARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSY---GGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELY 156 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBT---TCCCCCEEEEEEEEETTEEEEEEECTTSCEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccc---CCcCcceEEEEEEEeCCcCEEEEECCCCCeeeee
Confidence 9999999999999999999999999999999999999999987 8899999999999999899999999999999999
Q ss_pred eEEECCChhhHHHHHHhhcCC--CC--CHHHHHHHHHHHHHHHhhcc--CCCCcEEEEEEeCC--eEEcCHhHHHHHH
Q 042723 157 AKAIGSGSEGADSSLQEQYNK--DL--TLQEAETIALSILKQVMEEK--VTPNNVDIARVAPT--YHLYTPSEVEAVI 226 (262)
Q Consensus 157 ~~a~G~gs~~a~~~Le~~~~~--~m--s~eea~~la~~al~~~~~~d--~s~~~iev~ii~k~--~~~~~~~ei~~~l 226 (262)
++|+|+|+++++++||+.|++ +| |+|||++++++||..+. +| .++++++|.+|+++ +++++++||+++|
T Consensus 157 ~~aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~~l~~~ei~~~l 233 (233)
T 1ryp_F 157 GTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 233 (233)
T ss_dssp EEEESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEEEEEGGGGGGGC
T ss_pred EEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEEECCHHHHHhhC
Confidence 999999999999999999998 99 99999999999999999 55 48999999999999 9999999998764
No 18
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=4.4e-54 Score=375.48 Aligned_cols=221 Identities=35% Similarity=0.568 Sum_probs=206.1
Q ss_pred cCCCCCCccccCCCCCchhhhhHHHHhccCCcEEEEeec--------cccCCCCcCCCccCceEEEcCcEEEEEecCHHH
Q 042723 5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK--------KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIAD 76 (262)
Q Consensus 5 ~~~yd~~~~~fsp~G~~~QieyA~kav~~G~tiVgI~~~--------~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D 76 (262)
+++||+++|+|||||||+|||||++|+++|+|+|||+++ +|.+.++...++.+||++|+++++++++|..+|
T Consensus 1 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD 80 (244)
T 1ryp_G 1 GTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPD 80 (244)
T ss_dssp CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHHH
T ss_pred CCCccCCcccCCcCCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHHH
Confidence 468999999999999999999999999999999999999 677766655556699999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecC
Q 042723 77 ARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCN 156 (262)
Q Consensus 77 ~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~ 156 (262)
++.+.++++.+++.|++++++++++..++++|++++|.|+++. +.|||++++||||+|++||+||.+||+|++.+++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~---~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~ 157 (244)
T 1ryp_G 81 GRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN---SVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYK 157 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCT---TBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccc---CccCceEEEEEEEEeCCcCEEEEECCCCCEEEee
Confidence 9999999999999999999999999999999999999999987 8899999999999998899999999999999999
Q ss_pred eEEECCChhhHHHHHHhh---cCCCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeC---C-eEEcCHhHHHHHHHh
Q 042723 157 AKAIGSGSEGADSSLQEQ---YNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAP---T-YHLYTPSEVEAVINR 228 (262)
Q Consensus 157 ~~a~G~gs~~a~~~Le~~---~~~~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k---~-~~~~~~~ei~~~l~~ 228 (262)
++|+|+|+++++++||+. |+++||++||++++++||..+.++|. ++++++|.+|++ + ++++.++++.+..++
T Consensus 158 ~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~~~~~~~~~~~ 237 (244)
T 1ryp_G 158 GAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAID 237 (244)
T ss_dssp EEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHHHHHHHH
T ss_pred EEEECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeChHHHHHHHHH
Confidence 999999999999999997 99999999999999999999999987 789999999998 6 777777666555543
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=3.4e-46 Score=328.24 Aligned_cols=217 Identities=21% Similarity=0.309 Sum_probs=187.6
Q ss_pred ccCCCCCch-hhhhHHHHhccCCcEEEEeec---cccCCCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHH
Q 042723 14 TFSPEGRLF-QVEYAIEAIKLGSTAIGLKTK---KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQ 89 (262)
Q Consensus 14 ~fsp~G~~~-QieyA~kav~~G~tiVgI~~~---~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~ 89 (262)
-|||+|++. |||||++|+++|+|+|||+++ ..+..+. +++.+||++|+++++++++|..+|++.|++.++.+++
T Consensus 6 ~~sPe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r--s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~ 83 (259)
T 1q5q_A 6 YASAEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP--STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHAD 83 (259)
T ss_dssp ---CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS--CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC--CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHH
Confidence 479999995 999999999999999999999 1111111 4788999999999999999999999999999999999
Q ss_pred HHHHHhC-CCCCHHHHHHHHHH-HHHHhcCCCccCCCccceEEEEEEEEc----CCCCeEEEECCCCcee-ecCeEEECC
Q 042723 90 NHRFSYG-EPMTVESTTQALCD-LVLRFGEGDEESMSRPFGVSLLIAGSD----ENGPSLYYTDPSGTFW-QCNAKAIGS 162 (262)
Q Consensus 90 ~~~~~~~-~~i~~~~la~~ls~-~l~~~~~~~~~~~~rP~~vs~iiaG~d----~~gp~Ly~iD~~G~~~-~~~~~a~G~ 162 (262)
.+++.++ ++++++.++++|++ +.|.|+. +.|||+|++|||||| .+||+||++||+|++. +++++|+|+
T Consensus 84 ~~~~~~~~~~i~v~~la~~l~~~l~q~yt~-----~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~ 158 (259)
T 1q5q_A 84 MRGYSYDRRDVTGRSLANAYAQTLGTIFTE-----QPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGG 158 (259)
T ss_dssp HHHHHSCGGGCCHHHHHHHHHHHHHHHHHH-----SSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESS
T ss_pred HHHHHcCCcCCCHHHHHHHHHHHHHHHhcc-----CCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECC
Confidence 9999988 49999999999999 6677873 569999999999999 6789999999999999 889999999
Q ss_pred ChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHh-----hccCCCCcEEEEEEeCC-----eEEcCHhHHHHHHHhhhhh
Q 042723 163 GSEGADSSLQEQYNKDLTLQEAETIALSILKQVM-----EEKVTPNNVDIARVAPT-----YHLYTPSEVEAVINRPMSI 232 (262)
Q Consensus 163 gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~-----~~d~s~~~iev~ii~k~-----~~~~~~~ei~~~l~~~~~~ 232 (262)
|++.++++||+.|+++|+++||++++++||..+. ++|+++++++|++|+++ +++++++||++++..+...
T Consensus 159 gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~sg~~iev~vi~~~~~~~~~~~l~~~ei~~~~~~~~~~ 238 (259)
T 1q5q_A 159 TTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQLVPAEPAA 238 (259)
T ss_dssp SHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCEEECCHHHHHTTSCCC---
T ss_pred ChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccCCCCcEEEEEEECCCCcCCeEECCHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999998 88888899999999986 9999999999999999877
Q ss_pred hhhcc
Q 042723 233 RRKSS 237 (262)
Q Consensus 233 ~~~~~ 237 (262)
+..+.
T Consensus 239 ~~~~~ 243 (259)
T 1q5q_A 239 ASESA 243 (259)
T ss_dssp -----
T ss_pred ccccc
Confidence 66553
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=1.6e-43 Score=309.17 Aligned_cols=208 Identities=20% Similarity=0.303 Sum_probs=181.3
Q ss_pred CCCCCch-hhhhHHHHhccCCcEEEEeec---cccCCCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHH
Q 042723 16 SPEGRLF-QVEYAIEAIKLGSTAIGLKTK---KRITSPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNH 91 (262)
Q Consensus 16 sp~G~~~-QieyA~kav~~G~tiVgI~~~---~~~~~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~ 91 (262)
||++-.. ++|||+||+++|+|+|||+++ ..+..+. +++.+||++|++|++++++|..+|++.|.+.++.+++.|
T Consensus 8 ~p~~~~~~r~EYA~~av~~GtT~vgi~~kdgVVlaadkr--~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~ 85 (248)
T 3mi0_A 8 SPEQAMRERSELARKGIARAKSVVALAYAGGVLFVAENP--SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTR 85 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCCEEEEEETTEEEEEEECC--CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CHHHhcccchHHHHHHHhCCCcEEEEEeCCEEEEEEeCC--CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHH
Confidence 5555443 689999999999999999999 1111111 468899999999999999999999999999999999999
Q ss_pred HHHhC-CCCCHHHHHHHHH-HHHHHhcCCCccCCCccceEEEEEEEEcC----CCCeEEEECCCCceee-cCeEEECCCh
Q 042723 92 RFSYG-EPMTVESTTQALC-DLVLRFGEGDEESMSRPFGVSLLIAGSDE----NGPSLYYTDPSGTFWQ-CNAKAIGSGS 164 (262)
Q Consensus 92 ~~~~~-~~i~~~~la~~ls-~~l~~~~~~~~~~~~rP~~vs~iiaG~d~----~gp~Ly~iD~~G~~~~-~~~~a~G~gs 164 (262)
+++++ ++++++.|+++|+ .+.|.|+++ +|||+|++||||||+ +||+||++||+|++.+ ++++|+|+|+
T Consensus 86 ~~~~~~~~i~v~~la~~l~~~l~q~yt~~-----~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs 160 (248)
T 3mi0_A 86 GYAYDRRDVTGRQLANVYAQTLGTIFTEQ-----AKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTT 160 (248)
T ss_dssp HHHSCGGGCCHHHHHHHHHHHHHHHHHHS-----SSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCH
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhccC-----CCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccH
Confidence 99999 8999999999999 677888874 599999999999998 6899999999999995 9999999999
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHh-------hccCCCCcEEEEEEeCC-----eEEcCHhHHHHHHHhhh
Q 042723 165 EGADSSLQEQYNKDLTLQEAETIALSILKQVM-------EEKVTPNNVDIARVAPT-----YHLYTPSEVEAVINRPM 230 (262)
Q Consensus 165 ~~a~~~Le~~~~~~ms~eea~~la~~al~~~~-------~~d~s~~~iev~ii~k~-----~~~~~~~ei~~~l~~~~ 230 (262)
+.++++||+.|+++|+++||++++++||..+. +++++++++||++|+++ |++++++||++++..+.
T Consensus 161 ~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~~~ 238 (248)
T 3mi0_A 161 EPIANALKESYAENASLTDALRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDANRPRRAFRRITGSALQALLVDQE 238 (248)
T ss_dssp HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC----
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccccCCCcEEEEEEECCCCcccEEECCHHHHHHHHHHcC
Confidence 99999999999999999999999999999998 66788999999999987 89999999999998764
No 21
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=5.1e-43 Score=300.87 Aligned_cols=199 Identities=25% Similarity=0.403 Sum_probs=180.1
Q ss_pred CCcEEEEeec--------cccC-CCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 042723 34 GSTAIGLKTK--------KRIT-SPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVEST 104 (262)
Q Consensus 34 G~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~l 104 (262)
|+|+|||+++ +|.+ +.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 7999999999 6665 457788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccCCCccceEEEEEEEEcC-CCCeEEEECCCCceeecC-eEEECCChhhHHHHHHhhcCCCCCHH
Q 042723 105 TQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCN-AKAIGSGSEGADSSLQEQYNKDLTLQ 182 (262)
Q Consensus 105 a~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~-~gp~Ly~iD~~G~~~~~~-~~a~G~gs~~a~~~Le~~~~~~ms~e 182 (262)
+++|++++|.+ + .|||++++||||||+ +||+||++||+|++.+++ +.|+|+|+++++++||+.|+++|+++
T Consensus 81 a~~l~~~~~~~--~-----~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~e 153 (219)
T 3h4p_a 81 ATLLSNILHSS--R-----MFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVE 153 (219)
T ss_dssp HHHHHHHHHHT--T-----TTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHH
T ss_pred HHHHHHHHHHh--c-----CCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHH
Confidence 99999999766 2 379999999999998 689999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEEcCHhHHHHHHHhhhhhhhhcccc
Q 042723 183 EAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTPSEVEAVINRPMSIRRKSSLK 239 (262)
Q Consensus 183 ea~~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~~~~~ei~~~l~~~~~~~~~~~~~ 239 (262)
||++++++||..+.++|. ++++++|++|+++ +++++++||+++|.++...++.++.|
T Consensus 154 ea~~la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~l~~~ei~~~l~~~~~~~~~~~~~ 212 (219)
T 3h4p_a 154 EGIKLALNALKSAMERDTFSGNGISLAVITKDGVKIFEDEEIEKILDSMKAKPKKKTTK 212 (219)
T ss_dssp HHHHHHHHHHHHHHTSCSSCCSCCCEEEEETTEEEECCHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEEcCHHHHHHHHHHhhcccccccch
Confidence 999999999999999996 7899999999999 99999999999999999888887643
No 22
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=2.3e-42 Score=296.34 Aligned_cols=194 Identities=23% Similarity=0.393 Sum_probs=178.6
Q ss_pred HHhccCCcEEEEeec--------cccC-CCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 042723 29 EAIKLGSTAIGLKTK--------KRIT-SPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPM 99 (262)
Q Consensus 29 kav~~G~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i 99 (262)
+++.+|+|+|||+++ +|.+ ++++.+++.+||++|+++++++++|..+|++.+.++++.+++.|++++++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (217)
T 1yar_H 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNM 82 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 578899999999999 6665 4788889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCCCC
Q 042723 100 TVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDL 179 (262)
Q Consensus 100 ~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~m 179 (262)
+++.++++++++++.+ +.|||++++|||||| +||+||.+||+|++.+++++|+|+|+++++++||+.|+++|
T Consensus 83 ~v~~la~~l~~~~~~~-------r~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ 154 (217)
T 1yar_H 83 PIEAVATLLSNMLNQV-------KYMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKM 154 (217)
T ss_dssp CHHHHHHHHHHHHHHT-------TTSCCCEEEEEEEES-SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTC
T ss_pred CHHHHHHHHHHHHHhc-------CCCCceEEEEEEEEC-CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCC
Confidence 9999999999999653 348999999999999 99999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeC-C-eEEcCHhHHHHHHHhhh
Q 042723 180 TLQEAETIALSILKQVMEEKV-TPNNVDIARVAP-T-YHLYTPSEVEAVINRPM 230 (262)
Q Consensus 180 s~eea~~la~~al~~~~~~d~-s~~~iev~ii~k-~-~~~~~~~ei~~~l~~~~ 230 (262)
|+|||++++++||..+.++|. ++++++|.+|++ + +++++++||++++..+.
T Consensus 155 s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~~ei~~~~~~~~ 208 (217)
T 1yar_H 155 TVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLG 208 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCHHHHHHHHHHHH
Confidence 999999999999999999996 789999999999 6 99999999999998776
No 23
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=1e-41 Score=289.05 Aligned_cols=189 Identities=25% Similarity=0.429 Sum_probs=178.9
Q ss_pred CcEEEEeec--------cccC-CCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 042723 35 STAIGLKTK--------KRIT-SPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 105 (262)
Q Consensus 35 ~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 105 (262)
+|+|||+++ +|.+ ++++.+++.+||++|+++++++++|..+|++.+.++++.+++.|++++++++|++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 689999999 6665 4788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecC-eEEECCChhhHHHHHHhhcCCCCCHHHH
Q 042723 106 QALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCN-AKAIGSGSEGADSSLQEQYNKDLTLQEA 184 (262)
Q Consensus 106 ~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~-~~a~G~gs~~a~~~Le~~~~~~ms~eea 184 (262)
++++++++.+ +.|||++++||||+|++||+||.+||+|++.+++ ++|+|+|+++++++||+.|+++||++||
T Consensus 81 ~~l~~~~~~~-------r~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea 153 (202)
T 1j2q_H 81 TLTSNLLNSY-------RYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEA 153 (202)
T ss_dssp HHHHHHHHHT-------TTSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHH
T ss_pred HHHHHHHHhh-------CCCCceEEEEEEEEeCCCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHH
Confidence 9999999653 3489999999999999899999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEEcCHhHHHHHHHhhh
Q 042723 185 ETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTPSEVEAVINRPM 230 (262)
Q Consensus 185 ~~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~~~~~ei~~~l~~~~ 230 (262)
++++++||..+.++|. ++++++|.+|+++ +++++++|+++++..+.
T Consensus 154 ~~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~~~~ 201 (202)
T 1j2q_H 154 VELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAKFR 201 (202)
T ss_dssp HHHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEECHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeEEeCHHHHHHHHHHhh
Confidence 9999999999999996 7899999999999 99999999999998874
No 24
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=1e-41 Score=303.36 Aligned_cols=211 Identities=20% Similarity=0.306 Sum_probs=181.5
Q ss_pred CCCCCchhhh------hHHHHhccCCcEEEEeec--------cccC-CCCcCCCccCceEEEcCcEEEEEecCHHHHHHH
Q 042723 16 SPEGRLFQVE------YAIEAIKLGSTAIGLKTK--------KRIT-SPLLEPSSVEKIKEIDEHIGCAMSGLIADARTL 80 (262)
Q Consensus 16 sp~G~~~Qie------yA~kav~~G~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l 80 (262)
+|+..+.+.. ++.+++.+|+|+|||+++ +|.+ +.++.+++.+||++|+++++++++|..+|++.+
T Consensus 51 ~p~~~~~~~~~~~~~~~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l 130 (287)
T 3nzj_K 51 SPQQFLRAHTDDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFW 130 (287)
T ss_dssp -------------------------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHH
T ss_pred CHHHHHHHhcccccccchhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHH
Confidence 5666666553 678999999999999999 6665 577888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEc-CCCCeEEEECCCCceeecCeEE
Q 042723 81 VEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKA 159 (262)
Q Consensus 81 ~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d-~~gp~Ly~iD~~G~~~~~~~~a 159 (262)
.++++.+++.|+++++++++++.+++++++++|.|++ +||++++|||||| .+||+||++||.|++.++++.|
T Consensus 131 ~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~-------~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~A 203 (287)
T 3nzj_K 131 ETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG-------AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFC 203 (287)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT-------SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcC-------CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEE
Confidence 9999999999999999999999999999999976643 4899999999999 4689999999999999999999
Q ss_pred ECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEEcCHhHHHHHHHhhhhhh
Q 042723 160 IGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTPSEVEAVINRPMSIR 233 (262)
Q Consensus 160 ~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~~~~~ei~~~l~~~~~~~ 233 (262)
+|+|+.+++++||+.|+++|+++||++++++||..+.+||. ++++++|++|+++ +++++++||++++.++.+..
T Consensus 204 iGsgs~~a~~~Le~~y~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l~~~ev~~~l~~~~e~~ 279 (287)
T 3nzj_K 204 VGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKVKEEE 279 (287)
T ss_dssp ESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHHHHHHHHH
T ss_pred EecchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEEeCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999997 7899999999999 99999999999999988653
No 25
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=1.3e-41 Score=303.65 Aligned_cols=206 Identities=21% Similarity=0.223 Sum_probs=187.4
Q ss_pred HHHHhccCCcEEEEeec--------cccC-CCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCC
Q 042723 27 AIEAIKLGSTAIGLKTK--------KRIT-SPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGE 97 (262)
Q Consensus 27 A~kav~~G~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~ 97 (262)
|++|+++|+|+|||+++ +|.+ ++++.+++.+||++|+++++++++|..+|++.++++++.+++.|++++++
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 88999999999999999 6666 47888899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCC-C-----CeEEEECCCCceeec--CeEEECCChhhHHH
Q 042723 98 PMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDEN-G-----PSLYYTDPSGTFWQC--NAKAIGSGSEGADS 169 (262)
Q Consensus 98 ~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~-g-----p~Ly~iD~~G~~~~~--~~~a~G~gs~~a~~ 169 (262)
+++++.++++|++++|.++++ .+|||+|++||||||++ | |+||++||+|++.++ ++.|+|+|+.++++
T Consensus 138 ~isv~~la~~la~~l~~~~~~----~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~ 213 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGA----AMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKS 213 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH----HTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhh----hcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHH
Confidence 999999999999999988765 46999999999999986 6 999999999999999 89999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHhhccC-CCC--cE-----EEEEEeCC-eEEcCHhHHHHHHHhhhhhhhhc
Q 042723 170 SLQEQYNKDLTLQEAETIALSILKQVMEEKV-TPN--NV-----DIARVAPT-YHLYTPSEVEAVINRPMSIRRKS 236 (262)
Q Consensus 170 ~Le~~~~~~ms~eea~~la~~al~~~~~~d~-s~~--~i-----ev~ii~k~-~~~~~~~ei~~~l~~~~~~~~~~ 236 (262)
+||+.|+++|+++||++++++||..+.++|. +++ ++ +|.+|+++ +++++++|+++++..+.+.|+..
T Consensus 214 ~Le~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~l~~~ei~~~l~~i~~~~~~~ 289 (294)
T 1q5r_H 214 ALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRIVAERTEQ 289 (294)
T ss_dssp HHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHHHHHCC-----
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEEcCHHHHHHHHHHHHHHhhhC
Confidence 9999999999999999999999999999997 443 26 99999999 99999999999999998777665
No 26
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=1.8e-41 Score=302.45 Aligned_cols=227 Identities=18% Similarity=0.156 Sum_probs=166.4
Q ss_pred cCCCCCCccccCCCCCc-----hh--hhhHHHHhccCCcEEEEeec--------cccCC-CCcCCCccCceEEEcCcEEE
Q 042723 5 RTEYDRGVNTFSPEGRL-----FQ--VEYAIEAIKLGSTAIGLKTK--------KRITS-PLLEPSSVEKIKEIDEHIGC 68 (262)
Q Consensus 5 ~~~yd~~~~~fsp~G~~-----~Q--ieyA~kav~~G~tiVgI~~~--------~~~~~-~l~~~~~~~Ki~~I~~~i~~ 68 (262)
.++|+..+....|+.-- ++ +|||++ +++|+|+|||+++ +|.+. .++.+++.+||++|++++++
T Consensus 22 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~ 100 (291)
T 2jay_A 22 LSSFTDFLRRQAPELLPASISGGAPLAGGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTAT 100 (291)
T ss_dssp -------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEE
T ss_pred CccHHHHhhhcChhhccccccccCcCcccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEE
Confidence 35677677777776422 22 689999 9999999999999 66664 57788899999999999999
Q ss_pred EEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCC-C-----Ce
Q 042723 69 AMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDEN-G-----PS 142 (262)
Q Consensus 69 ~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~-g-----p~ 142 (262)
+++|..+|++.++++++.+++.|++.++++++++.++++++++++.+++. .+|||+|++||||||++ + |+
T Consensus 101 ~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~~----~~rpf~v~~lvaG~D~~g~~~~~~p~ 176 (291)
T 2jay_A 101 GIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAA----AMQGLLALPLLAGYDIHASDPQSAGR 176 (291)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHHH----HHHTCCCEEEEEEECTTCSCSTTCEE
T ss_pred EEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhhh----hccccceeEEEEEEeCCCCcCCCCCE
Confidence 99999999999999999999999999999999999999999999877542 57899999999999986 4 89
Q ss_pred EEEECCCCcee--ecCeEEECCChhhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhhccCCCCcE--------EEEEEeC
Q 042723 143 LYYTDPSGTFW--QCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNV--------DIARVAP 212 (262)
Q Consensus 143 Ly~iD~~G~~~--~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~s~~~i--------ev~ii~k 212 (262)
||++||+|++. ++++.|+|+|+++++++||+.|+++|+++||++++++||+.+.++|+..+++ +|.+|++
T Consensus 177 Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~ 256 (291)
T 2jay_A 177 IVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDA 256 (291)
T ss_dssp EEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEET
T ss_pred EEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEEC
Confidence 99999999998 8899999999999999999999999999999999999999999999843344 6999999
Q ss_pred C-eEEcCHhHHHHHHHhhhhhhhhc
Q 042723 213 T-YHLYTPSEVEAVINRPMSIRRKS 236 (262)
Q Consensus 213 ~-~~~~~~~ei~~~l~~~~~~~~~~ 236 (262)
+ +++++++||++++..+..+|...
T Consensus 257 dg~~~l~~~ei~~~~~~~~~~~~~~ 281 (291)
T 2jay_A 257 DGAVDVPESRIAELARAIIESRSGA 281 (291)
T ss_dssp TEEEECCHHHHHHHHHHC-------
T ss_pred CCeEEcCHHHHHHHHHHHHHhhhcc
Confidence 9 99999999999999998777655
No 27
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=7.6e-41 Score=284.10 Aligned_cols=190 Identities=21% Similarity=0.317 Sum_probs=179.3
Q ss_pred CcEEEEeec--------cccCC-CCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 042723 35 STAIGLKTK--------KRITS-PLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 105 (262)
Q Consensus 35 ~tiVgI~~~--------~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 105 (262)
+|+|||+++ +|.+. +++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 689999999 66654 788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCCCCCHHHHH
Q 042723 106 QALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAE 185 (262)
Q Consensus 106 ~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~ 185 (262)
+++++++|.|++ +||++++||||||++||+||.+||+|++.++++.|+|+|+++++++||+.|+++||++||+
T Consensus 81 ~~l~~~~~~~r~-------~~~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~ 153 (204)
T 1iru_L 81 KLLANMVYQYKG-------MGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAY 153 (204)
T ss_dssp HHHHHHHHTTTT-------SCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHH
T ss_pred HHHHHHHHHhCC-------CCeeEEEEEEEEeCCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHH
Confidence 999999976632 5899999999999989999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEEcCHhHHHHHHHhhhh
Q 042723 186 TIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTPSEVEAVINRPMS 231 (262)
Q Consensus 186 ~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~~~~~ei~~~l~~~~~ 231 (262)
+++++||..+.++|. ++++++|.+|+++ +++++++|+++++.++..
T Consensus 154 ~l~~~al~~~~~rd~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~~~~~ 201 (204)
T 1iru_L 154 DLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSG 201 (204)
T ss_dssp HHHHHHHHHHHHHBTTCCSEEEEEEECSSCEEEEEEEEHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCccCCCceEEEEEeCCceEEeCHHHHHHHHHHhcc
Confidence 999999999999996 8999999999999 999999999999998853
No 28
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=1.2e-40 Score=284.62 Aligned_cols=195 Identities=19% Similarity=0.313 Sum_probs=181.9
Q ss_pred CcEEEEeec--------cccC-CCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 042723 35 STAIGLKTK--------KRIT-SPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 105 (262)
Q Consensus 35 ~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 105 (262)
+|+|||+++ +|.+ ++++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 689999999 6666 4788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCccceEEEEEEEEc-CCCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCCCCCHHHH
Q 042723 106 QALCDLVLRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEA 184 (262)
Q Consensus 106 ~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d-~~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea 184 (262)
+++++++|.|++ .||++++||||+| ++||+||.+||+|++.++++.|+|+|+++++++||+.|+++||++||
T Consensus 81 ~~l~~~~~~~~~-------~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea 153 (212)
T 1ryp_L 81 KILSNLVYQYKG-------AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDA 153 (212)
T ss_dssp HHHHHHHHHTTT-------SCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHH
T ss_pred HHHHHHHHhhCC-------CCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHH
Confidence 999999987754 3899999999999 45899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEEcCHhHHHHHHHhhhhhhhhc
Q 042723 185 ETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTPSEVEAVINRPMSIRRKS 236 (262)
Q Consensus 185 ~~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~~~~~ei~~~l~~~~~~~~~~ 236 (262)
++++++||..+.++|. ++++++|.+|+++ +++++++|+++++.++.+..+.+
T Consensus 154 ~~la~~al~~~~~rd~~s~~~i~v~vi~~~g~~~~~~~ei~~~~~~~~~~~~~~ 207 (212)
T 1ryp_L 154 LYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKVKEEEGSF 207 (212)
T ss_dssp HHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhccccCCceEEEEEcCCceEEECHHHHHHHHHHHHHhhhhh
Confidence 9999999999999986 7999999999999 99999999999999986544443
No 29
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=3e-40 Score=286.48 Aligned_cols=198 Identities=22% Similarity=0.245 Sum_probs=184.2
Q ss_pred CcEEEEeec--------cccC-CCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 042723 35 STAIGLKTK--------KRIT-SPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 105 (262)
Q Consensus 35 ~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 105 (262)
+|+|||+++ +|.+ ++++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 689999999 6666 4788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCccceEEEEEEEEcCC-C-----CeEEEECCCCceeec--CeEEECCChhhHHHHHHhhcCC
Q 042723 106 QALCDLVLRFGEGDEESMSRPFGVSLLIAGSDEN-G-----PSLYYTDPSGTFWQC--NAKAIGSGSEGADSSLQEQYNK 177 (262)
Q Consensus 106 ~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~-g-----p~Ly~iD~~G~~~~~--~~~a~G~gs~~a~~~Le~~~~~ 177 (262)
+.|+++++.++++ .+|||++++||||+|++ | |+||++||+|++.++ ++.|+|+|+.+++++||+.|++
T Consensus 81 ~~l~~~~~~~~~~----~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~ 156 (235)
T 1q5q_H 81 NRLASMVRGNLGA----AMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSP 156 (235)
T ss_dssp HHHHHHHHTTHHH----HTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHh----hhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCC
Confidence 9999999887654 36899999999999986 7 999999999999999 9999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhccC-CCC-c-E-----EEEEEeCC-eEEcCHhHHHHHHHhhhhhhhhc
Q 042723 178 DLTLQEAETIALSILKQVMEEKV-TPN-N-V-----DIARVAPT-YHLYTPSEVEAVINRPMSIRRKS 236 (262)
Q Consensus 178 ~ms~eea~~la~~al~~~~~~d~-s~~-~-i-----ev~ii~k~-~~~~~~~ei~~~l~~~~~~~~~~ 236 (262)
+||++||++++++||..+.++|. +++ . + +|.+|+++ +++++++|+++++..+.++|+.+
T Consensus 157 ~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~l~~~ei~~~~~~~~~~~~~~ 224 (235)
T 1q5q_H 157 DSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRIVAERTEQ 224 (235)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEEeCHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999997 453 2 3 99999999 99999999999999998887777
No 30
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=1.9e-41 Score=290.88 Aligned_cols=192 Identities=18% Similarity=0.217 Sum_probs=179.8
Q ss_pred HHHhccCCcEEEEeec--------cccC-CCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHH-HhCC
Q 042723 28 IEAIKLGSTAIGLKTK--------KRIT-SPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRF-SYGE 97 (262)
Q Consensus 28 ~kav~~G~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~-~~~~ 97 (262)
++|+++|+|+|||+++ +|.+ +.++.+++.+||++|+++++++++|..+|++.|.+.++.+++.|++ ++++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3688999999999999 6665 5788889999999999999999999999999999999999999998 9999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCC
Q 042723 98 PMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK 177 (262)
Q Consensus 98 ~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~ 177 (262)
+++++.+++++++++ |+++. +.|||++++||||+|++||+||.+||+|++.++++.|+|+|+++++++||+.|++
T Consensus 82 ~~~v~~la~~l~~~l--y~~r~---~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 156 (219)
T 1iru_N 82 SYSPRAIHSWLTRAM--YSRRS---KMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEK 156 (219)
T ss_dssp CCCHHHHHHHHHHHH--HHHHH---TTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHH--HHhcc---cCCCceEEEEEEEEECCCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCC
Confidence 999999999999999 55565 6799999999999998899999999999999999999999999999999999999
Q ss_pred --CCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEEcCHhHHHH
Q 042723 178 --DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTPSEVEA 224 (262)
Q Consensus 178 --~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~~~~~ei~~ 224 (262)
+||++||++++++||..+.++|. ++++++|.+|+++ +++++++||+.
T Consensus 157 ~~~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~i~~ 207 (219)
T 1iru_N 157 QPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTET 207 (219)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEECCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcCCeeccc
Confidence 99999999999999999999997 7999999999999 99999887654
No 31
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=8.1e-41 Score=289.61 Aligned_cols=193 Identities=18% Similarity=0.268 Sum_probs=180.5
Q ss_pred HHHhccCCcEEEEeec--------cccC-CCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHH-----
Q 042723 28 IEAIKLGSTAIGLKTK--------KRIT-SPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRF----- 93 (262)
Q Consensus 28 ~kav~~G~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~----- 93 (262)
++|+++|+|+|||+++ +|.+ +.++.+++.+||++|+++++++++|..+|++.|.++++.+++.|++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 3688999999999999 6665 5778888999999999999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCC-CCeEEEECCCCceeecCeEEECCChhhHHHHHH
Q 042723 94 SYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 172 (262)
Q Consensus 94 ~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~-gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le 172 (262)
+++++++++.+++++++++ |+++. ++|||++++||||+|++ ||+||.+||.|++.++++.|+|+|+++++++||
T Consensus 82 ~~~~~~~v~~la~~l~~~l--y~~r~---~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le 156 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVM--YQRRS---KMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLR 156 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHH--HHHHH---TTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHT
T ss_pred hcCCCCCHHHHHHHHHHHH--HHhcC---CCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHH
Confidence 8999999999999999999 66665 67999999999999986 899999999999999999999999999999999
Q ss_pred hhcCC-----CCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC--eEEcCHhHHHHH
Q 042723 173 EQYNK-----DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT--YHLYTPSEVEAV 225 (262)
Q Consensus 173 ~~~~~-----~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~--~~~~~~~ei~~~ 225 (262)
+.|++ +||+|||++++++||..+.++|. ++++++|.+|+++ +++++++||+++
T Consensus 157 ~~~~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~~~~~i~~~ 217 (233)
T 1ryp_N 157 KVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENM 217 (233)
T ss_dssp TTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCSC
T ss_pred HhhccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEcChHhcccc
Confidence 99999 99999999999999999999997 7999999999998 999998887654
No 32
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=1.7e-39 Score=276.03 Aligned_cols=186 Identities=19% Similarity=0.291 Sum_probs=173.8
Q ss_pred CcEEEEeec--------cccCCC-CcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 042723 35 STAIGLKTK--------KRITSP-LLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 105 (262)
Q Consensus 35 ~tiVgI~~~--------~~~~~~-l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 105 (262)
||+|||+++ +|.+.+ ++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 689999999 666654 78888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCccceEEEEEEEEcC-CCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCCCCCHHHH
Q 042723 106 QALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEA 184 (262)
Q Consensus 106 ~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~-~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea 184 (262)
+++++++|.|+ +||++++||||+|+ +||+||.+||.|++.+++++++|+|+++++++||+.|+++||++||
T Consensus 81 ~~l~~~~~~~~--------~p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea 152 (205)
T 1iru_H 81 SLFKEMCYRYR--------EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEEC 152 (205)
T ss_dssp HHHHHHHHHTT--------TTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHH
T ss_pred HHHHHHHHhcC--------cCccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHH
Confidence 99999997663 28999999999998 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccC-CCCcEEEEEEeCC---eEEcCHhHHHHHHHh
Q 042723 185 ETIALSILKQVMEEKV-TPNNVDIARVAPT---YHLYTPSEVEAVINR 228 (262)
Q Consensus 185 ~~la~~al~~~~~~d~-s~~~iev~ii~k~---~~~~~~~ei~~~l~~ 228 (262)
++++++||..+.++|. ++++++|.+|+++ +++++++||++++.+
T Consensus 153 ~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~~ 200 (205)
T 1iru_H 153 LQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVA 200 (205)
T ss_dssp HHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCCC
T ss_pred HHHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHhh
Confidence 9999999999999996 7999999999999 678999999877654
No 33
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=1e-38 Score=269.65 Aligned_cols=181 Identities=19% Similarity=0.201 Sum_probs=168.1
Q ss_pred CCcEEEEeec--------cccCC-CCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 042723 34 GSTAIGLKTK--------KRITS-PLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVEST 104 (262)
Q Consensus 34 G~tiVgI~~~--------~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~l 104 (262)
++|+|||+++ +|.+. .++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV 80 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 5899999999 66654 45557799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccCCCccceEEEEEEEEcC--CCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCCCCCHH
Q 042723 105 TQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE--NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQ 182 (262)
Q Consensus 105 a~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~--~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~e 182 (262)
+++++++++.|++. ++||++++||||+|+ +||+||.+||+|++.++++.|+|+|+++++++||+.|+++||++
T Consensus 81 a~~l~~~l~~~~~~-----r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~e 155 (198)
T 1ryp_K 81 SSFVRQELAKSIRS-----RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTE 155 (198)
T ss_dssp HHHHHHHHHHHTTS-----SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHH
T ss_pred HHHHHHHHHHhccc-----CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHH
Confidence 99999999887642 259999999999996 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEEcCH
Q 042723 183 EAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTP 219 (262)
Q Consensus 183 ea~~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~~~~ 219 (262)
||++++++||..+.++|. ++++++|.+|+++ ++++++
T Consensus 156 ea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~ 194 (198)
T 1ryp_K 156 EGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDD 194 (198)
T ss_dssp HHHHHHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEECC
T ss_pred HHHHHHHHHHHHHHHhCccCCCceEEEEEcCCCEEEecc
Confidence 999999999999999986 8999999999999 888765
No 34
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=9.6e-39 Score=280.80 Aligned_cols=186 Identities=24% Similarity=0.331 Sum_probs=166.2
Q ss_pred HHHHhccCCcEEEEeec--------cccC-CCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCC
Q 042723 27 AIEAIKLGSTAIGLKTK--------KRIT-SPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGE 97 (262)
Q Consensus 27 A~kav~~G~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~ 97 (262)
+.||+++|+|+|||+++ +|.+ +.++.+++.+||++|+++++++++|..+|++.+.+.++.+++.|++++++
T Consensus 22 ~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~ 101 (261)
T 3nzj_H 22 QPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSR 101 (261)
T ss_dssp --------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCC
Confidence 36899999999999999 6665 46778889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCC
Q 042723 98 PMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK 177 (262)
Q Consensus 98 ~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~ 177 (262)
+++++.+++++++.++.| .+||++++||||+|++||+||++||+|++.++++.|+|+|++.++++||+.|++
T Consensus 102 ~~~v~~~a~~l~~~l~~~--------~~~~gv~llvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 173 (261)
T 3nzj_H 102 EPRVVSALQMLKQHLFKY--------QGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQ 173 (261)
T ss_dssp CCCHHHHHHHHHHHHHHT--------TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCS
T ss_pred CCCHHHHHHHHHHHHHHh--------cCcccEEEEEEEEeCCCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhcc
Confidence 999999999999998544 268999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC--eEEcCHh
Q 042723 178 DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT--YHLYTPS 220 (262)
Q Consensus 178 ~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~--~~~~~~~ 220 (262)
+|++|||++++++||..+.++|. ++++++|++|+++ ++++.+.
T Consensus 174 ~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~~ 219 (261)
T 3nzj_H 174 DLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNY 219 (261)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEeccc
Confidence 99999999999999999999997 8999999999999 6665443
No 35
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=7.1e-39 Score=272.20 Aligned_cols=177 Identities=16% Similarity=0.288 Sum_probs=167.1
Q ss_pred HHHhccCCcEEEEeec--------cccCC-CCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 042723 28 IEAIKLGSTAIGLKTK--------KRITS-PLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEP 98 (262)
Q Consensus 28 ~kav~~G~tiVgI~~~--------~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 98 (262)
++|+++|+|+|||+++ +|.+. .++.+++.+||++|+++++++++|..+|++.+.++++.+++.|++++++
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~- 81 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT- 81 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 5889999999999999 66664 4778889999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcC-CCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCC
Q 042723 99 MTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK 177 (262)
Q Consensus 99 i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~-~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~ 177 (262)
++++.+++++++++|.|++ + |++++||||+|+ +||+||.+||.|++.++++.|+|+|+++++++||+.|++
T Consensus 82 ~~v~~la~~l~~~~~~~~~-------~-~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 153 (205)
T 1ryp_H 82 PSTETAASVFKELCYENKD-------N-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRE 153 (205)
T ss_dssp CCHHHHHHHHHHHHHHTTT-------T-CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCT
T ss_pred CCHHHHHHHHHHHHHhhhc-------C-ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCC
Confidence 9999999999999987743 2 899999999997 689999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC
Q 042723 178 DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 213 (262)
Q Consensus 178 ~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~ 213 (262)
+||++||++++++||..+.++|. ++++++|.+|+++
T Consensus 154 ~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~ 190 (205)
T 1ryp_H 154 NMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAA 190 (205)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCC
Confidence 99999999999999999999997 7999999999999
No 36
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=2.7e-40 Score=291.78 Aligned_cols=198 Identities=17% Similarity=0.260 Sum_probs=182.2
Q ss_pred hhhhHHHHhccCCcEEEEeec--------cccC-CCCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHH
Q 042723 23 QVEYAIEAIKLGSTAIGLKTK--------KRIT-SPLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRF 93 (262)
Q Consensus 23 QieyA~kav~~G~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~ 93 (262)
..+.+++++++|+|+|||+++ +|.+ +.++.+++.+||++|+++++++++|..+|++.|+++++.+++.|++
T Consensus 30 ~~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~ 109 (266)
T 1g0u_M 30 PMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAY 109 (266)
T ss_dssp ----CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhh
Confidence 356778999999999999999 6665 5678888999999999999999999999999999999999999998
Q ss_pred -----HhCCCCCHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCC-CCeEEEECCCCceeecCeEEECCChhhH
Q 042723 94 -----SYGEPMTVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGA 167 (262)
Q Consensus 94 -----~~~~~i~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~-gp~Ly~iD~~G~~~~~~~~a~G~gs~~a 167 (262)
+++++++++.+++++++++ |+++. ++|||++++||||+|++ ||+||.+||.|++.+++++|+|+|+.++
T Consensus 110 ~~~~~~~~~~~~v~~la~~l~~~l--y~~r~---~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a 184 (266)
T 1g0u_M 110 DNPLADAEEALEPSYIFEYLATVM--YQRRS---KMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMA 184 (266)
T ss_dssp TCTTTTTTTSCCHHHHHHHHHHHH--HHHHH---TTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTH
T ss_pred ccchhhcCCCCCHHHHHHHHHHHH--HHhcc---CCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHH
Confidence 8999999999999999999 66665 67999999999999986 8999999999999999999999999999
Q ss_pred HHHHHhhcCC-----CCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC--eEEcCHhHHHHH
Q 042723 168 DSSLQEQYNK-----DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT--YHLYTPSEVEAV 225 (262)
Q Consensus 168 ~~~Le~~~~~-----~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~--~~~~~~~ei~~~ 225 (262)
+++||+.|++ +||+|||++++++||..+.++|. ++++++|++|+++ +++++++||+++
T Consensus 185 ~~~Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~~~ei~~~ 250 (266)
T 1g0u_M 185 NPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENM 250 (266)
T ss_dssp HHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCCC
T ss_pred HHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcCHHHhhhh
Confidence 9999999999 99999999999999999999997 7999999999998 999998887655
No 37
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=2.3e-38 Score=270.53 Aligned_cols=179 Identities=22% Similarity=0.280 Sum_probs=166.2
Q ss_pred hccCCcEEEEeec--------cccCC-CCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q 042723 31 IKLGSTAIGLKTK--------KRITS-PLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTV 101 (262)
Q Consensus 31 v~~G~tiVgI~~~--------~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~ 101 (262)
+++|+|+|||+++ +|.+. .++.+++.+||++|+++++++++|..+|++.+.++++.+++.|++++++++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 85 (213)
T 1iru_M 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT 85 (213)
T ss_dssp CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 5789999999999 66665 44556789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCC-CeEEEECCCCceeecCeEEECCChhhHHHHHHhh------
Q 042723 102 ESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQ------ 174 (262)
Q Consensus 102 ~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~g-p~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~------ 174 (262)
+.++++|++++ |+++. |||++++||||+|++| |+||.+||.|++.+++++|+|+|+++++++||+.
T Consensus 86 ~~la~~l~~~~--y~~r~-----~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~ 158 (213)
T 1iru_M 86 GAIAAMLSTIL--YSRRF-----FPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNM 158 (213)
T ss_dssp HHHHHHHHHHH--HHTTT-----SCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHH--HhhCC-----CCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccc
Confidence 99999999999 76654 8999999999999765 9999999999999999999999999999999999
Q ss_pred ---cCCCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEE
Q 042723 175 ---YNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHL 216 (262)
Q Consensus 175 ---~~~~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~ 216 (262)
|+++||+|||++++++||..+.++|. ++++++|.+|+++ ++.
T Consensus 159 ~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 205 (213)
T 1iru_M 159 QNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIRE 205 (213)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEE
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEE
Confidence 88899999999999999999999997 7999999999999 543
No 38
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=7.7e-39 Score=277.41 Aligned_cols=182 Identities=26% Similarity=0.412 Sum_probs=170.3
Q ss_pred CcEEEEeec--------cccCCC-CcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 042723 35 STAIGLKTK--------KRITSP-LLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 105 (262)
Q Consensus 35 ~tiVgI~~~--------~~~~~~-l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 105 (262)
||+|||+++ +|.+.+ ++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 689999999 666654 46678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCCCCCHHHHH
Q 042723 106 QALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAE 185 (262)
Q Consensus 106 ~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~ 185 (262)
++++++++.| + +||++++||||+|++||+||++||+|++.++++.|+|+|+.+++++||+.|+++|++|||+
T Consensus 81 ~~l~~~l~~~--~------~p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~ 152 (234)
T 3unf_H 81 RILRQTLFRY--Q------GHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQ 152 (234)
T ss_dssp HHHHHHHHHT--T------TCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHH
T ss_pred HHHHHHHHhc--C------CCccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHH
Confidence 9999999654 2 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEEcCHhHHHH
Q 042723 186 TIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTPSEVEA 224 (262)
Q Consensus 186 ~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~~~~~ei~~ 224 (262)
+++++||..+.++|. ++++++|++|+++ ++++++++++.
T Consensus 153 ~la~~al~~~~~~D~~sg~~iev~vi~~dg~~~l~~~~i~~ 193 (234)
T 3unf_H 153 ELLVEAITAGILSDLGSGGNVDACVITAGGAKLQRALSTPT 193 (234)
T ss_dssp HHHHHHHHHHHHHBTTCCSCEEEEEEESSCEEEEEEEECCC
T ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEECCCEEEeCceeccc
Confidence 999999999999997 8999999999999 99998888763
No 39
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=8e-38 Score=269.00 Aligned_cols=180 Identities=21% Similarity=0.306 Sum_probs=166.9
Q ss_pred HhccCCcEEEEeec--------cccCCC-CcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhC-CCC
Q 042723 30 AIKLGSTAIGLKTK--------KRITSP-LLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYG-EPM 99 (262)
Q Consensus 30 av~~G~tiVgI~~~--------~~~~~~-l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~-~~i 99 (262)
.+++|+|+|||+++ +|.+.+ ++.+++.+||++|+++++++++|..+|++.+.+.++.+++.|+++++ +++
T Consensus 5 ~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 84 (222)
T 1ryp_M 5 YGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKL 84 (222)
T ss_dssp CCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred cccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 46799999999999 666654 45678999999999999999999999999999999999999999999 999
Q ss_pred CHHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCC-CeEEEECCCCceeecCeEEECCChhhHHHHHHhh----
Q 042723 100 TVESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQ---- 174 (262)
Q Consensus 100 ~~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~g-p~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~---- 174 (262)
+++.+++++++++ |+++. +||++++||||+|++| |+||.+||.|++.++++.|+|+|+.+++++||+.
T Consensus 85 ~v~~la~~l~~~l--y~~r~-----~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~ 157 (222)
T 1ryp_M 85 SINSAARNIQHLL--YGKRF-----FPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFK 157 (222)
T ss_dssp CHHHHHHHHHHHH--HTTTT-----SCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCT
T ss_pred CHHHHHHHHHHHH--HhcCC-----CCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccc
Confidence 9999999999999 76654 8999999999999765 9999999999999999999999999999999998
Q ss_pred -------------cCCCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEE
Q 042723 175 -------------YNKDLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT-YHL 216 (262)
Q Consensus 175 -------------~~~~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~ 216 (262)
|+++|++|||++++++||..+.++|+ ++++++|.+|+++ ++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~ 214 (222)
T 1ryp_M 158 NQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRK 214 (222)
T ss_dssp TCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEE
T ss_pred cccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEE
Confidence 88999999999999999999999997 7999999999999 543
No 40
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=1.3e-37 Score=264.36 Aligned_cols=176 Identities=14% Similarity=0.183 Sum_probs=163.5
Q ss_pred hccCCcEEEEeec--------cccCCCC-cCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q 042723 31 IKLGSTAIGLKTK--------KRITSPL-LEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTV 101 (262)
Q Consensus 31 v~~G~tiVgI~~~--------~~~~~~l-~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~ 101 (262)
+.+|+|+|||+++ +|.+.++ +.+++.+||++|+++++++++|..+|++.+.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP 84 (205)
T ss_dssp TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 4689999999999 6666544 455689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcC--CCCeEEEECCCCceeec-CeEEECCChhhHHHHHHhhcCCC
Q 042723 102 ESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE--NGPSLYYTDPSGTFWQC-NAKAIGSGSEGADSSLQEQYNKD 178 (262)
Q Consensus 102 ~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~--~gp~Ly~iD~~G~~~~~-~~~a~G~gs~~a~~~Le~~~~~~ 178 (262)
+.+++++++++ |+++. .||++++||||+|+ +||+||.+||.|++.++ .++|+|+|+++++++||+.|+++
T Consensus 85 ~~la~~l~~~~--y~~r~-----~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ 157 (205)
T 1iru_J 85 YTLMSMVANLL--YEKRF-----GPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPN 157 (205)
T ss_dssp HHHHHHHHHHH--HTTTT-----SCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHH--HHhcC-----CCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCC
Confidence 99999999999 88775 49999999999995 68999999999999666 67999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC
Q 042723 179 LTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 213 (262)
Q Consensus 179 ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~ 213 (262)
||+|||++++++||..+.++|. ++++++|.+|+++
T Consensus 158 ~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~ 193 (205)
T 1iru_J 158 MDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKD 193 (205)
T ss_dssp CCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCC
Confidence 9999999999999999999997 7999999999999
No 41
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=3.4e-37 Score=261.54 Aligned_cols=176 Identities=18% Similarity=0.171 Sum_probs=163.3
Q ss_pred HhccCCcEEEEeec--------cccCCCC-cCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 042723 30 AIKLGSTAIGLKTK--------KRITSPL-LEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMT 100 (262)
Q Consensus 30 av~~G~tiVgI~~~--------~~~~~~l-~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 100 (262)
.+.+|+|+|||+++ +|.+.++ +.+++.+||++|+ +++++++|..+|++.+.++++.+++.|+++++++++
T Consensus 4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 82 (204)
T 1ryp_J 4 SSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIE 82 (204)
T ss_dssp GGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 45789999999999 6666544 4556899999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcC--CCCeEEEECCCCceeec-CeEEECCChhhHHHHHHhhcCC
Q 042723 101 VESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE--NGPSLYYTDPSGTFWQC-NAKAIGSGSEGADSSLQEQYNK 177 (262)
Q Consensus 101 ~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~--~gp~Ly~iD~~G~~~~~-~~~a~G~gs~~a~~~Le~~~~~ 177 (262)
++.+++++++++ |+++. .||++++||||+|+ +||+||.+||.|++.++ .++|+|+|+++++++||+.|++
T Consensus 83 v~~la~~l~~~~--y~~~~-----~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~ 155 (204)
T 1ryp_J 83 PETFTQLVSSSL--YERRF-----GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEP 155 (204)
T ss_dssp HHHHHHHHHHHH--HTTTT-----SCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHH--HHhcC-----CCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCC
Confidence 999999999999 88875 39999999999996 67999999999999666 6799999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCC
Q 042723 178 DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVAPT 213 (262)
Q Consensus 178 ~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~k~ 213 (262)
+|++|||++++++||..+.++|. ++++++|.+|+++
T Consensus 156 ~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~ 192 (204)
T 1ryp_J 156 NLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKD 192 (204)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESS
T ss_pred CcCHHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCC
Confidence 99999999999999999999997 7999999999999
No 42
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=2.4e-37 Score=261.97 Aligned_cols=181 Identities=19% Similarity=0.207 Sum_probs=165.7
Q ss_pred CCcEEEEeec--------cccCC-CCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 042723 34 GSTAIGLKTK--------KRITS-PLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVEST 104 (262)
Q Consensus 34 G~tiVgI~~~--------~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~l 104 (262)
++|+|||+++ +|.+. +++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 80 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA 80 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5899999999 66664 78888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccCCCccceEEEEEEEEcC-CCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCCCCCHHH
Q 042723 105 TQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQE 183 (262)
Q Consensus 105 a~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~-~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~ee 183 (262)
++++++.+. |..+ ..|||++++||||+|+ +||+||.+||.|++.++++.|+|+|+++++++||+.|+++|+++|
T Consensus 81 a~~~~~~l~-~~~~----~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~ee 155 (201)
T 1iru_K 81 ANFTRRNLA-DCLR----SRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRER 155 (201)
T ss_dssp HHHHHHHHH-HHHT----SSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHH-HHHh----cCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHH
Confidence 999987652 2222 2379999999999997 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEEcCH
Q 042723 184 AETIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTP 219 (262)
Q Consensus 184 a~~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~~~~ 219 (262)
|++++++||..+.+||. ++++++|.+|+++ +++++.
T Consensus 156 a~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~ 193 (201)
T 1iru_K 156 AVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDN 193 (201)
T ss_dssp HHHHHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCCC
T ss_pred HHHHHHHHHHHHHhhccccCCceEEEEEcCCCeEEeec
Confidence 99999999999999998 7999999999999 777653
No 43
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=9.5e-38 Score=263.91 Aligned_cols=182 Identities=18% Similarity=0.289 Sum_probs=167.2
Q ss_pred CcEEEEeec--------cccCC-CCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 042723 35 STAIGLKTK--------KRITS-PLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 105 (262)
Q Consensus 35 ~tiVgI~~~--------~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 105 (262)
||+|||+++ +|.+. .++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 689999999 66654 578889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCccceEEEEEEEEcC-CCCeEEEECCCCceeec-CeEEECCChhhHHHHHHhhcCCCCCHHH
Q 042723 106 QALCDLVLRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQC-NAKAIGSGSEGADSSLQEQYNKDLTLQE 183 (262)
Q Consensus 106 ~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~-~gp~Ly~iD~~G~~~~~-~~~a~G~gs~~a~~~Le~~~~~~ms~ee 183 (262)
++++++++.+ +|||++++||||+|+ +||+||. |+|++.++ .++++|+|+++++++||+.|+++||+||
T Consensus 81 ~~l~~~l~~~--------~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~ee 150 (199)
T 3unf_N 81 NVVKNISYKY--------REDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEE 150 (199)
T ss_dssp HHHHHHHHHT--------TTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHH
T ss_pred HHHHHHHHhc--------CCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHH
Confidence 9999999643 269999999999998 5799999 99997665 5667799999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccC-CCCcEEEEEEeCC---eEEcCHhHHHHHH
Q 042723 184 AETIALSILKQVMEEKV-TPNNVDIARVAPT---YHLYTPSEVEAVI 226 (262)
Q Consensus 184 a~~la~~al~~~~~~d~-s~~~iev~ii~k~---~~~~~~~ei~~~l 226 (262)
|++++++||..+.++|. ++++++|++|+++ +++++++||++++
T Consensus 151 a~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~ 197 (199)
T 3unf_N 151 CRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFY 197 (199)
T ss_dssp HHHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCC
T ss_pred HHHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCcccc
Confidence 99999999999999997 7899999999998 8899999997654
No 44
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=1.5e-36 Score=261.13 Aligned_cols=179 Identities=23% Similarity=0.325 Sum_probs=165.3
Q ss_pred CcEEEEeec--------cccCC-CCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 042723 35 STAIGLKTK--------KRITS-PLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 105 (262)
Q Consensus 35 ~tiVgI~~~--------~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 105 (262)
+|+|||+++ +|.+. .++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 689999999 66654 456677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCCCCCHHHHH
Q 042723 106 QALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAE 185 (262)
Q Consensus 106 ~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~ 185 (262)
+++++.++.| + |||++++||||+|++||+||.+||+|++.++++.|+|+|+++++++||+.|+++|+++||+
T Consensus 81 ~~l~~~l~~~--~------~p~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~ 152 (222)
T 1ryp_I 81 QMLKQHLFKY--Q------GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAI 152 (222)
T ss_dssp HHHHHHHHHT--T------TCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHH
T ss_pred HHHHHHHhhc--C------CCCCeeEEEEEEeCCCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHH
Confidence 9999999654 2 6999999999999989999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccC-CCCcEEEEEEeCC--eEEcCHhH
Q 042723 186 TIALSILKQVMEEKV-TPNNVDIARVAPT--YHLYTPSE 221 (262)
Q Consensus 186 ~la~~al~~~~~~d~-s~~~iev~ii~k~--~~~~~~~e 221 (262)
+++++||..+.++|. ++++++|++|+++ ++++.+.+
T Consensus 153 ~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~~ 191 (222)
T 1ryp_I 153 KLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYL 191 (222)
T ss_dssp HHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEE
T ss_pred HHHHHHHHHHHhccccCCCcEEEEEEECCCCEEEEecee
Confidence 999999999999997 7999999999998 67664433
No 45
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=2e-36 Score=262.30 Aligned_cols=179 Identities=22% Similarity=0.362 Sum_probs=165.9
Q ss_pred CcEEEEeec--------cccCC-CCcCCCccCceEEEcCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 042723 35 STAIGLKTK--------KRITS-PLLEPSSVEKIKEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTT 105 (262)
Q Consensus 35 ~tiVgI~~~--------~~~~~-~l~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 105 (262)
+|+|||+++ +|.+. .++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 689999999 66665 445667899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecCeEEECCChhhHHHHHHhhcCCCCCHHHHH
Q 042723 106 QALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAE 185 (262)
Q Consensus 106 ~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~ 185 (262)
+++++.++.| + +||++++||||+|++||+||.+||.|++.++++.|+|+|++.+.++||+.|+++|+++||+
T Consensus 81 ~~l~~~l~~~--~------~~~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~ 152 (234)
T 1iru_I 81 RMLKQMLFRY--R------GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAK 152 (234)
T ss_dssp HHHHHHHHHT--T------TCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHH
T ss_pred HHHHHHHHhc--C------CCCceeEEEEEEcCCCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHH
Confidence 9999999654 2 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccC-CCCcEEEEEEeCC-eEEcCHhH
Q 042723 186 TIALSILKQVMEEKV-TPNNVDIARVAPT-YHLYTPSE 221 (262)
Q Consensus 186 ~la~~al~~~~~~d~-s~~~iev~ii~k~-~~~~~~~e 221 (262)
+++++||..+.++|. ++++++|++|+++ ++++.+.+
T Consensus 153 ~la~~al~~a~~~d~~sg~~i~v~vi~k~g~~~~~~~~ 190 (234)
T 1iru_I 153 NLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYT 190 (234)
T ss_dssp THHHHHHHHHHHHCTTCCSCEEEEEEETTEEECCSEEE
T ss_pred HHHHHHHHHHHHhcccCCCCEEEEEEECCcEEEEccee
Confidence 999999999999997 7999999999999 88776544
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.97 E-value=2e-30 Score=216.07 Aligned_cols=161 Identities=20% Similarity=0.271 Sum_probs=139.5
Q ss_pred ccCCcEEEEeec--------cccC-CCC-cCCCccCceEEE-cCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 042723 32 KLGSTAIGLKTK--------KRIT-SPL-LEPSSVEKIKEI-DEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMT 100 (262)
Q Consensus 32 ~~G~tiVgI~~~--------~~~~-~~l-~~~~~~~Ki~~I-~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 100 (262)
.+|+|+|||+++ +|.+ +.+ +.+++.+||++| +++++++++|..+|++.|.++++.+++.|+ + +
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g---~ 76 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G---N 76 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T---C
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C---C
Confidence 579999999999 6665 467 889999999999 999999999999999999999999999987 3 2
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceee--cCeEEECCChhhHHHHHHhhcCC-
Q 042723 101 VESTTQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQ--CNAKAIGSGSEGADSSLQEQYNK- 177 (262)
Q Consensus 101 ~~~la~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~--~~~~a~G~gs~~a~~~Le~~~~~- 177 (262)
+.+.++++.+.++++. .+|||++++||| +||+||.+||.|++.+ +++.|+|+|+++++++||+.|++
T Consensus 77 ---~~~~~~~l~~~~~~~~---~~rp~~~~~lva----d~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~ 146 (180)
T 2z3b_A 77 ---LKRAAVELAKEWRSDK---VLRKLEAMLIVM----NQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHA 146 (180)
T ss_dssp ---HHHHHHHHHHHHHHCT---TGGGCCCCEEEE----CSSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHhhh---CcCcceEEEEEE----cCCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhcc
Confidence 2233333344455554 779999999999 4799999999999988 49999999999999999999998
Q ss_pred --CCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEe
Q 042723 178 --DLTLQEAETIALSILKQVMEEKV-TPNNVDIARVA 211 (262)
Q Consensus 178 --~ms~eea~~la~~al~~~~~~d~-s~~~iev~ii~ 211 (262)
+|+.|| ++++||+.+.+||. ++++++|.+|+
T Consensus 147 ~~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i~ 180 (180)
T 2z3b_A 147 GESMSASE---IARAALETAGEICVYTNDQIILEELE 180 (180)
T ss_dssp GGGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred CCCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEEC
Confidence 999999 47799999999997 89999999883
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.97 E-value=1.3e-29 Score=209.30 Aligned_cols=157 Identities=20% Similarity=0.273 Sum_probs=135.5
Q ss_pred CcEEEEeec--------cccC-CCCcCCCccCceEEE-cCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 042723 35 STAIGLKTK--------KRIT-SPLLEPSSVEKIKEI-DEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVEST 104 (262)
Q Consensus 35 ~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I-~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~l 104 (262)
||+|||+++ +|.+ +.++.+++.+||++| +++++++++|..+|++.+.++++.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 689999999 6666 478888999999999 99999999999999999999999999988744 25555
Q ss_pred HHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecC--eEEECCChhhHHHHHHhhcC-CCCCH
Q 042723 105 TQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCN--AKAIGSGSEGADSSLQEQYN-KDLTL 181 (262)
Q Consensus 105 a~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~--~~a~G~gs~~a~~~Le~~~~-~~ms~ 181 (262)
++. ++. +.++. ..|||++++|+| | ||+||.+||.|++.+++ +.|+|+|+++++++||+.|+ ++||.
T Consensus 76 ~~l-~~~---~~~~~---~~~~~~~~~lv~--D--~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~ 144 (171)
T 1m4y_A 76 VEL-AKD---WRTDR---VLRRLEALLLVA--D--KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA 144 (171)
T ss_dssp HHH-HHH---HHHCT---TGGGCCCEEEEE--C--SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH
T ss_pred HHH-HHH---HHHhC---CCCceEEEEEEE--c--CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH
Confidence 544 333 33333 567899999999 5 89999999999999987 99999999999999999999 99996
Q ss_pred HHHHHHHHHHHHHHhhccC-CCCcEEEEEE
Q 042723 182 QEAETIALSILKQVMEEKV-TPNNVDIARV 210 (262)
Q Consensus 182 eea~~la~~al~~~~~~d~-s~~~iev~ii 210 (262)
++++++||+.+.+||. ++++++|.++
T Consensus 145 ---~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 145 ---REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp ---HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred ---HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 6789999999999997 7999999764
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.96 E-value=3.4e-29 Score=207.43 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=136.0
Q ss_pred CcEEEEeec--------cccC-CCCcCCCccCceEEE-cCcEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 042723 35 STAIGLKTK--------KRIT-SPLLEPSSVEKIKEI-DEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVEST 104 (262)
Q Consensus 35 ~tiVgI~~~--------~~~~-~~l~~~~~~~Ki~~I-~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~l 104 (262)
+|+|||+++ +|.+ +.++.+++.+||++| +++++++++|..+|++.|.++++.+++.|+. +....
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 689999999 6666 457888999999999 9999999999999999999999999999874 34444
Q ss_pred HHHHHHHHHHhcCCCccCCCccceEEEEEEEEcCCCCeEEEECCCCceeecC---eEEECCChhhHHHHHHhhcC-CCCC
Q 042723 105 TQALCDLVLRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCN---AKAIGSGSEGADSSLQEQYN-KDLT 180 (262)
Q Consensus 105 a~~ls~~l~~~~~~~~~~~~rP~~vs~iiaG~d~~gp~Ly~iD~~G~~~~~~---~~a~G~gs~~a~~~Le~~~~-~~ms 180 (262)
+..|++.+ +++. ..||+ +.+++|+| +|+||.+||+|++.+++ +.|+|+|+++++++||+.|+ ++|+
T Consensus 75 ~~~l~~~~---~~~~---~~r~~--~~~l~g~d--~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt 144 (174)
T 1g3k_A 75 AVELAKDW---RTDR---ALRKL--EAMLIVAD--EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELS 144 (174)
T ss_dssp HHHHHHHH---HHST---TGGGC--CCEEEEEC--SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHH---Hhcc---CcCcc--eEEEEEEC--CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCC
Confidence 55555555 3343 56776 46777787 89999999999999988 99999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHhhccC-CCCcEEEEEEe
Q 042723 181 LQEAETIALSILKQVMEEKV-TPNNVDIARVA 211 (262)
Q Consensus 181 ~eea~~la~~al~~~~~~d~-s~~~iev~ii~ 211 (262)
.+ +++++||+.+.+||. ++++++|.+|+
T Consensus 145 ~~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 145 AH---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp HH---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred HH---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 55 799999999999997 79999999986
No 49
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=60.08 E-value=22 Score=25.87 Aligned_cols=54 Identities=11% Similarity=0.301 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC---eEEcCHhHHHHHHHhhhhhhhhcccccCcc
Q 042723 180 TLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSEVEAVINRPMSIRRKSSLKILPW 243 (262)
Q Consensus 180 s~eea~~la~~al~~~~~~d~s~~~iev~ii~k~---~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~ 243 (262)
+.+|.+.++.+-|+ -..|-+-..+.+ +++++.++++-.++.-+ ...|+.+.+||
T Consensus 34 ~ykdLl~lmr~~F~--------~~DIaLNYrD~eGDLIrilddeDv~lmi~~sr--~~~s~k~~FPW 90 (107)
T 1oey_J 34 LLKDLLELTRREFQ--------REDIALNYRDAEGDLVRLLSDEDVALMVRQAR--GLPSQKRLFPW 90 (107)
T ss_dssp CHHHHHHHHHHHHC--------CSSEEEEEECTTSCEEECCSHHHHHHHHHHCC--CCCCTTCBCSS
T ss_pred CHHHHHHHHHHHhc--------ccceeeeeecCCCCEEEEcchHHHHHHHHHhh--cCcccccccce
Confidence 67888888877776 246777788877 99999999999887764 56667788998
No 50
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=50.01 E-value=19 Score=25.47 Aligned_cols=57 Identities=4% Similarity=0.005 Sum_probs=44.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEeCC---eEEcCHhHHHHHHHhhhhhhhhc
Q 042723 175 YNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSEVEAVINRPMSIRRKS 236 (262)
Q Consensus 175 ~~~~ms~eea~~la~~al~~~~~~d~s~~~iev~ii~k~---~~~~~~~ei~~~l~~~~~~~~~~ 236 (262)
..++++.++..+.+++.++.. .+..+.+.+++.+ +.+.+.+|+++.++-++..|+..
T Consensus 22 v~~~i~~~~L~~kv~~~~~~~-----~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~~ 81 (89)
T 1vd2_A 22 FEPSISFEGLCNEVRDMCSFD-----NEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSE 81 (89)
T ss_dssp ECTTCCHHHHHHHHHHHTTCC-----SSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCCHHHHHHHHHHHhCCC-----CCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCCC
Confidence 345788999888877755421 3567999999987 89999999999999888666654
No 51
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=47.33 E-value=28 Score=25.84 Aligned_cols=30 Identities=7% Similarity=-0.023 Sum_probs=26.1
Q ss_pred CCcEEEEEEeCC----eEEcCHhHHHHHHHhhhh
Q 042723 202 PNNVDIARVAPT----YHLYTPSEVEAVINRPMS 231 (262)
Q Consensus 202 ~~~iev~ii~k~----~~~~~~~ei~~~l~~~~~ 231 (262)
.+.+-|.+++++ +|.+|++++-.+..++.+
T Consensus 66 ~~~~vVkVvD~~TgEVIRqIPpEe~L~l~~~l~e 99 (117)
T 2hc5_A 66 LNEYYVKVIEDSTNEVIREIPPKRWLDFYAAMTE 99 (117)
T ss_dssp TTEEEEEEEETTTTEEEEEECHHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCChHHHHHHHHHHHH
Confidence 456899999988 899999999999988874
No 52
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=35.21 E-value=20 Score=28.50 Aligned_cols=31 Identities=10% Similarity=-0.042 Sum_probs=28.1
Q ss_pred ccccCCCCCch-hhhhHHHHhccCCcEEEEee
Q 042723 12 VNTFSPEGRLF-QVEYAIEAIKLGSTAIGLKT 42 (262)
Q Consensus 12 ~~~fsp~G~~~-QieyA~kav~~G~tiVgI~~ 42 (262)
+-+||+.|+-- -||.|+++-.+|-++|||..
T Consensus 81 vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 81 VLIFTPDTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp EEEEESCSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 44799999776 99999999999999999999
No 53
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=26.76 E-value=42 Score=27.53 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=27.9
Q ss_pred cccCCCCCchhhhhHHHHhccCCcEEEEeec
Q 042723 13 NTFSPEGRLFQVEYAIEAIKLGSTAIGLKTK 43 (262)
Q Consensus 13 ~~fsp~G~~~QieyA~kav~~G~tiVgI~~~ 43 (262)
|.||+||...--|++.+|...|=+.|||.-.
T Consensus 8 t~~S~DG~~~~ee~v~~A~~~Gl~~iaiTDH 38 (267)
T 2yxo_A 8 TPLCGHAEGHPEAYLEEARAKGLKGVVFTDH 38 (267)
T ss_dssp CGGGSSCCSCHHHHHHHHHHTTCSEEEEEEE
T ss_pred cCCCCCCCCCHHHHHHHHHHcCCCEEEEcCC
Confidence 5789999888889999999999999999876
No 54
>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A*
Probab=25.35 E-value=1e+02 Score=22.61 Aligned_cols=39 Identities=13% Similarity=0.093 Sum_probs=34.0
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 042723 71 SGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLV 112 (262)
Q Consensus 71 sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~l 112 (262)
.+...|...+.++++++++. ..|++.++.+-+++|+.++
T Consensus 72 p~RftD~akvekwf~rnc~~---v~gr~cta~EK~d~l~~l~ 110 (112)
T 1dw0_A 72 PDRFTDSARVEKWLGRNCNS---VIGRDCTPGEKADLLAWLA 110 (112)
T ss_dssp TTTTCCHHHHHHHHHHHHHH---HHSSCCCHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHhhhhH---HHcccCCHHHHHHHHHHHH
Confidence 45678999999999998876 6899999999999988775
No 55
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=20.10 E-value=70 Score=20.72 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=23.3
Q ss_pred EEECCChhhHHHHHHhhc--CCCCCHHHHHHHHHH
Q 042723 158 KAIGSGSEGADSSLQEQY--NKDLTLQEAETIALS 190 (262)
Q Consensus 158 ~a~G~gs~~a~~~Le~~~--~~~ms~eea~~la~~ 190 (262)
.+.|+....+...+++.. .++++.++.++.+++
T Consensus 25 ~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~ALk 59 (62)
T 1ixs_A 25 AALGFKEAQARAVVLDLLAQNPKARAQDLIKEALK 59 (62)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 456888888888887764 446777777666654
Done!