BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042724
(103 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 44 YEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-GRDFIEIQNSYATLSDPTARAVYD 100
Y+VL V+P T E+K AY+ LA YH D + N G F +I +Y LSD R +YD
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYD 66
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTAR 96
+D YE+L V T EI+ AY+ LA YH D + ++ F EI+ +Y L+D R
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 97 AVYDM 101
A YD
Sbjct: 63 AAYDQ 67
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTAR 96
+D YE+L V T EI+ AY+ LA YH D + ++ F EI+ +Y L+D R
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 97 AVYDM 101
A YD
Sbjct: 63 AAYDQ 67
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTAR 96
+D YE+L V T EI+ AY+ LA YH D + ++ F EI+ +Y L+D R
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 97 AVYDM 101
A YD
Sbjct: 63 AAYDQ 67
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS----GNGRDFIEIQNSYATLSDPTAR 96
+D Y ++ V+PT + IK AY+ LA+ YH D+S R F E+ ++ LSD R
Sbjct: 5 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEAR-FKEVAEAWEVLSDEQRR 63
Query: 97 AVYDMCL 103
A YD
Sbjct: 64 AEYDQMW 70
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTA 95
G LY VL ++ T +IK +Y+ LA YH D + + + F EI N++A L+D T
Sbjct: 16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATK 75
Query: 96 RAVYD 100
R +YD
Sbjct: 76 RNIYD 80
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 43 LYEVLRVEPTTTILEIKMAYQSLAKVYHLDL-SGNGRDFIEIQNSYATLSDPTARAVYDM 101
LY++L V P+ E+K Y+ A YH D +G+ F EI ++ L+DP R +YD
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQ 69
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNG---RDFIEIQNSYATLSDPTARA 97
+D Y +L V+PT + IK AY+ LA+ YH D+S F ++ ++ L D RA
Sbjct: 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRA 87
Query: 98 VYD 100
YD
Sbjct: 88 EYD 90
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 44 YEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD-FIEIQNSYATLSDPTARAVYD 100
Y+VL V+P + E+K AY+ +A +H D + +G + F +I +Y LSD R +YD
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYD 68
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS---GNGRDFIEIQNSYATLSDPTAR 96
G+D Y+ L + + EIK AY+ A YH D + G F EI +Y LSDP R
Sbjct: 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 97 AVYD 100
++D
Sbjct: 62 EIFD 65
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 42 DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS---GNGRDFIEIQNSYATLSDPTARAV 98
D Y VL V T + +IK AY+ LA+ +H D + G FI+I +Y LS+ R
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTN 77
Query: 99 YD 100
YD
Sbjct: 78 YD 79
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 42 DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARA 97
D Y++L V + EIK AY LAK YH D + + F ++ +Y LSD R
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 98 VYD 100
YD
Sbjct: 68 QYD 70
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 42 DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD-----FIEIQNSYATLSDPTAR 96
+ YEVL V+ + + +IK AY+ LA +H D + + ++ F + +Y LSD R
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 97 AVYDMC 102
++YD
Sbjct: 70 SLYDRA 75
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 42 DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS---GNGRDFIEIQNSYATLSDPTARAV 98
D YE+L V + ++K AY+ LA +H D + G F I +YA LS+P R
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 99 YDM 101
YD
Sbjct: 68 YDQ 70
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 42 DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNG-----RDFIEIQNSYATLSDPTAR 96
D YEVL V + IK AY+ LA +H D + R F ++ +Y LSD R
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 97 AVYD 100
+YD
Sbjct: 70 DIYD 73
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNG----------RDFIEIQNSYATL 90
+D Y +L +P+ I ++K YQ L +YH D + FIEI ++ L
Sbjct: 10 KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKIL 69
Query: 91 SDPTARAVYDM 101
+ + YD+
Sbjct: 70 GNEETKREYDL 80
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 44 YEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFI-----EIQNSYATLSDPTARAV 98
YE+L V + + +IK AY+ A +H D + + ++F E+ +Y LSD R +
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 99 YD 100
YD
Sbjct: 65 YD 66
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 44 YEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNG---RDFIEIQNSYATLSDPTARAVYD 100
Y++L V + + +IK A+ LA YH D + + F EI +Y TLSD R YD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNG----------RDFIEIQNSYATL 90
+D Y +L +P+ + ++K YQ L +YH D + FIEI ++ L
Sbjct: 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75
Query: 91 SDPTARAVYDM 101
+ + YD+
Sbjct: 76 GNEETKKKYDL 86
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNG----RDFIEIQNSYATLSDPTAR 96
++ Y +L V T + EI+ A++ LA H D + N DF++I +Y L D R
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61
Query: 97 AVYD 100
YD
Sbjct: 62 KKYD 65
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 35 DGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGR----DFIEIQNSYATL 90
+G D ++ Y +L V T + EI+ A++ LA H D + N DF++I +Y L
Sbjct: 16 EGRHD-QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVL 74
Query: 91 SDPTARAVYD 100
D R YD
Sbjct: 75 KDEDLRKKYD 84
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 43 LYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----FIEIQNSYATLSDPTARAV 98
LY++L V T T +IK AY +YH D + + F I +Y L T R
Sbjct: 19 LYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRK 78
Query: 99 YDMCL 103
YD L
Sbjct: 79 YDRGL 83
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 33.1 bits (74), Expect = 0.038, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-------GRDFIEIQNSYATLSDP 93
RD Y++L V+ EI AY+ LA +H D N + FI+I + LSDP
Sbjct: 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441
Query: 94 TARAVYD 100
R +D
Sbjct: 442 EXRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 33.1 bits (74), Expect = 0.040, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-------GRDFIEIQNSYATLSDP 93
RD Y++L V+ EI AY+ LA +H D N + FI+I + LSDP
Sbjct: 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441
Query: 94 TARAVYD 100
R +D
Sbjct: 442 EMRKKFD 448
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 25 SPCGFSGDACDGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRD----- 79
+ GF+ + G E+ D+ EV R E ++ AY++LA+ +H D N +
Sbjct: 2 NAVGFAPELYCGLENCYDVLEVNREEFDKQ--KLAKAYRALARKHHPDRVKNKEEKLLAE 59
Query: 80 --FIEIQNSYATLSDPTARAVYDMCL 103
F I +Y TL D A+ YD L
Sbjct: 60 ERFRVIATAYETLKDDEAKTNYDYYL 85
>pdb|3TB6|A Chain A, Structure Of The Effector-binding Domain Of Arabinose
Repressor Arar From Bacillus Subtilis
pdb|3TB6|B Chain B, Structure Of The Effector-binding Domain Of Arabinose
Repressor Arar From Bacillus Subtilis
Length = 298
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 47 LRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPT 94
L VEPT K A Q+ Y+L+L NG F I SYA L+ P+
Sbjct: 75 LIVEPT------KSALQTPNIGYYLNLEKNGIPFAMINASYAELAAPS 116
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 18 FGKEQEESPCGFSGDACDGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLD 72
F KEQ DA + +D +++L V+P + E+ AY+ LA + H D
Sbjct: 12 FTKEQ--------ADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPD 58
>pdb|4F5V|A Chain A, Crystal Structure Of Leporine Serum Albumin
Length = 584
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 19/85 (22%)
Query: 1 MTSCCRCSPTALQFHCRFGKEQEESPCGFSG---------DACDGAEDGRD------LYE 45
+ CC P + HC +G +E+P G D C E+ +D LYE
Sbjct: 275 LKECCD-KPILEKAHCIYGLHNDETPAGLPAVAEEFVEDKDVCKNYEEAKDLFLGKFLYE 333
Query: 46 VLRVEP---TTTILEIKMAYQSLAK 67
R P +L + AY++ K
Sbjct: 334 YSRRHPDYSVVLLLRLGKAYEATLK 358
>pdb|3V09|A Chain A, Crystal Structure Of Rabbit Serum Albumin
Length = 584
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 19/85 (22%)
Query: 1 MTSCCRCSPTALQFHCRFGKEQEESPCGFSG---------DACDGAEDGRD------LYE 45
+ CC P + HC +G +E+P G D C E+ +D LYE
Sbjct: 275 LKECCD-KPILEKAHCIYGLHNDETPAGLPAVAEEFVEDKDVCKNYEEAKDLFLGKFLYE 333
Query: 46 VLRVEP---TTTILEIKMAYQSLAK 67
R P +L + AY++ K
Sbjct: 334 YSRRHPDYSVVLLLRLGKAYEATLK 358
>pdb|4B7J|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7M|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7M|B Chain B, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7N|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
Length = 469
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 23 EESPCGFSGDAC-----DGAEDGRDLYEVLRVEPTTTILEIKM 60
+ES C +C DG DG+ Y++ R+E + ++M
Sbjct: 227 QESECACVNGSCFTVMTDGPSDGQASYKIFRIEKGKIVKSVEM 269
>pdb|1GS0|A Chain A, Crystal Structure Of The Catalytic Fragment Of Murine
Poly (Adp-Ribose) Polymerase-2
pdb|1GS0|B Chain B, Crystal Structure Of The Catalytic Fragment Of Murine
Poly (Adp-Ribose) Polymerase-2
Length = 351
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 54 TILEIKMAYQSLAKVYHLDLSG-NGRDFIEIQNSYAT 89
T+ +IK YQSL K+ +G +GR +E N + T
Sbjct: 41 TVAQIKAGYQSLKKIEDCIRAGQHGRALVEACNEFYT 77
>pdb|3KCZ|A Chain A, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment
In Complex With An Inhibitor 3-Aminobenzamide
pdb|3KCZ|B Chain B, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment
In Complex With An Inhibitor 3-Aminobenzamide
pdb|3KJD|A Chain A, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment
In Complex With An Inhibitor Abt-888
pdb|3KJD|B Chain B, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment
In Complex With An Inhibitor Abt-888
Length = 368
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 54 TILEIKMAYQSLAKVYHLDLSG-NGRDFIEIQNSYAT 89
T+ +IK YQSL K+ +G +GR +E N + T
Sbjct: 60 TVAQIKAGYQSLKKIEDCIRAGQHGRALMEACNEFYT 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,122,043
Number of Sequences: 62578
Number of extensions: 113775
Number of successful extensions: 288
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 34
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)