Query 042724
Match_columns 103
No_of_seqs 161 out of 1763
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 08:48:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 3.6E-26 7.9E-31 172.0 7.3 64 39-102 2-69 (371)
2 KOG0713 Molecular chaperone (D 99.9 1.4E-24 3.1E-29 160.7 6.8 65 38-102 13-81 (336)
3 PRK14288 chaperone protein Dna 99.9 1.6E-22 3.4E-27 153.1 7.0 62 40-101 2-67 (369)
4 PTZ00037 DnaJ_C chaperone prot 99.9 1.7E-22 3.7E-27 155.2 6.9 63 39-101 26-88 (421)
5 PRK14296 chaperone protein Dna 99.9 2.1E-22 4.5E-27 152.6 7.2 63 40-102 3-68 (372)
6 KOG0712 Molecular chaperone (D 99.9 5.4E-22 1.2E-26 147.9 6.8 64 39-102 2-66 (337)
7 PRK14279 chaperone protein Dna 99.9 1E-21 2.2E-26 149.8 6.7 63 40-102 8-74 (392)
8 PRK14286 chaperone protein Dna 99.8 1.9E-21 4.1E-26 147.4 7.1 62 40-101 3-68 (372)
9 PF00226 DnaJ: DnaJ domain; I 99.8 3.1E-21 6.8E-26 112.7 5.1 59 42-100 1-64 (64)
10 PRK14282 chaperone protein Dna 99.8 4.3E-21 9.2E-26 145.3 7.3 62 40-101 3-69 (369)
11 PRK14287 chaperone protein Dna 99.8 5E-21 1.1E-25 145.0 7.2 62 40-101 3-67 (371)
12 PRK14299 chaperone protein Dna 99.8 6.6E-21 1.4E-25 140.4 7.3 62 40-101 3-67 (291)
13 PRK14276 chaperone protein Dna 99.8 6.1E-21 1.3E-25 144.9 7.1 62 40-101 3-67 (380)
14 PRK14283 chaperone protein Dna 99.8 7E-21 1.5E-25 144.5 7.1 62 40-101 4-68 (378)
15 PRK14298 chaperone protein Dna 99.8 7.4E-21 1.6E-25 144.4 6.7 63 40-102 4-69 (377)
16 PRK14285 chaperone protein Dna 99.8 1E-20 2.2E-25 143.1 6.9 63 40-102 2-68 (365)
17 PRK14295 chaperone protein Dna 99.8 1.1E-20 2.4E-25 143.9 6.9 62 40-101 8-73 (389)
18 PRK14278 chaperone protein Dna 99.8 1.1E-20 2.5E-25 143.4 6.9 61 41-101 3-66 (378)
19 PRK14291 chaperone protein Dna 99.8 1.4E-20 3.1E-25 143.0 7.1 63 40-102 2-67 (382)
20 PRK14277 chaperone protein Dna 99.8 1.5E-20 3.3E-25 143.0 7.2 62 40-101 4-69 (386)
21 PRK14280 chaperone protein Dna 99.8 1.5E-20 3.2E-25 142.7 7.2 62 40-101 3-67 (376)
22 PRK14294 chaperone protein Dna 99.8 1.6E-20 3.4E-25 142.1 7.2 62 40-101 3-68 (366)
23 PRK14297 chaperone protein Dna 99.8 1.5E-20 3.3E-25 142.8 6.7 63 40-102 3-69 (380)
24 PRK14284 chaperone protein Dna 99.8 2.3E-20 5E-25 142.2 7.0 62 41-102 1-66 (391)
25 PRK14301 chaperone protein Dna 99.8 2.2E-20 4.9E-25 141.6 6.8 63 40-102 3-69 (373)
26 KOG0717 Molecular chaperone (D 99.8 2.3E-20 4.9E-25 142.8 6.3 65 37-101 4-73 (508)
27 PRK10767 chaperone protein Dna 99.8 4.3E-20 9.3E-25 139.8 7.2 62 40-101 3-68 (371)
28 KOG0715 Molecular chaperone (D 99.8 4.7E-20 1E-24 135.8 7.0 65 39-103 41-108 (288)
29 PRK14281 chaperone protein Dna 99.8 4.2E-20 9.1E-25 141.1 6.8 62 41-102 3-68 (397)
30 KOG0716 Molecular chaperone (D 99.8 3.9E-20 8.5E-25 133.8 5.9 63 40-102 30-96 (279)
31 PRK10266 curved DNA-binding pr 99.8 1.2E-19 2.5E-24 134.5 6.9 62 40-101 3-67 (306)
32 PRK14300 chaperone protein Dna 99.8 1.1E-19 2.3E-24 137.8 6.8 61 41-101 3-66 (372)
33 TIGR02349 DnaJ_bact chaperone 99.8 1.4E-19 3.1E-24 136.1 6.8 60 42-101 1-63 (354)
34 PRK14290 chaperone protein Dna 99.8 1.5E-19 3.3E-24 136.7 6.8 61 41-101 3-68 (365)
35 PRK14292 chaperone protein Dna 99.8 1.6E-19 3.5E-24 136.7 6.7 61 41-101 2-65 (371)
36 PRK14289 chaperone protein Dna 99.8 2.1E-19 4.5E-24 136.7 7.1 62 40-101 4-69 (386)
37 PRK14293 chaperone protein Dna 99.8 2.6E-19 5.7E-24 135.7 7.0 62 40-101 2-66 (374)
38 KOG0691 Molecular chaperone (D 99.8 2.8E-19 6.1E-24 131.8 6.3 63 40-102 4-70 (296)
39 smart00271 DnaJ DnaJ molecular 99.8 6E-19 1.3E-23 101.5 5.8 55 41-95 1-60 (60)
40 PHA03102 Small T antigen; Revi 99.8 1.4E-18 2.9E-23 117.7 5.4 62 40-101 4-67 (153)
41 KOG0719 Molecular chaperone (D 99.7 1.9E-18 4.1E-23 123.1 6.1 66 37-102 10-81 (264)
42 cd06257 DnaJ DnaJ domain or J- 99.7 3.4E-18 7.4E-23 96.7 5.8 51 42-92 1-55 (55)
43 PTZ00341 Ring-infected erythro 99.7 3.8E-18 8.2E-23 139.9 7.8 64 38-101 570-636 (1136)
44 KOG0718 Molecular chaperone (D 99.7 2.2E-18 4.7E-23 132.4 5.9 64 38-101 6-76 (546)
45 KOG0721 Molecular chaperone (D 99.7 7.9E-18 1.7E-22 118.7 6.2 64 38-101 96-163 (230)
46 COG2214 CbpA DnaJ-class molecu 99.7 4.1E-17 8.8E-22 112.3 6.4 63 39-101 4-71 (237)
47 TIGR03835 termin_org_DnaJ term 99.7 8.3E-17 1.8E-21 129.7 7.1 62 41-102 2-66 (871)
48 PRK05014 hscB co-chaperone Hsc 99.7 1.1E-16 2.5E-21 110.2 6.8 61 41-101 1-72 (171)
49 PRK01356 hscB co-chaperone Hsc 99.7 1.8E-16 3.9E-21 108.8 6.9 61 41-101 2-71 (166)
50 PRK03578 hscB co-chaperone Hsc 99.6 7.5E-16 1.6E-20 106.6 7.2 62 40-101 5-77 (176)
51 PRK00294 hscB co-chaperone Hsc 99.6 7.8E-16 1.7E-20 106.2 7.2 63 39-101 2-75 (173)
52 KOG0624 dsRNA-activated protei 99.6 3E-16 6.5E-21 118.1 5.2 64 38-101 391-461 (504)
53 PTZ00100 DnaJ chaperone protei 99.6 7E-16 1.5E-20 100.1 5.6 54 38-91 62-115 (116)
54 KOG0720 Molecular chaperone (D 99.6 2.3E-15 5E-20 115.5 5.0 66 38-103 232-300 (490)
55 PHA02624 large T antigen; Prov 99.5 5.7E-15 1.2E-19 117.4 5.6 62 38-99 8-71 (647)
56 KOG0722 Molecular chaperone (D 99.5 1.9E-14 4E-19 104.2 3.4 64 39-102 31-97 (329)
57 PRK09430 djlA Dna-J like membr 99.5 6.7E-14 1.4E-18 102.3 5.2 55 38-92 197-262 (267)
58 PRK01773 hscB co-chaperone Hsc 99.5 2.1E-13 4.6E-18 94.2 7.0 60 41-100 2-72 (173)
59 KOG0550 Molecular chaperone (D 99.4 8.1E-14 1.8E-18 106.4 4.3 64 38-101 370-438 (486)
60 KOG0714 Molecular chaperone (D 99.4 1.1E-13 2.4E-18 99.3 4.3 63 40-102 2-69 (306)
61 COG5407 SEC63 Preprotein trans 99.4 5E-13 1.1E-17 103.1 4.4 64 38-101 95-167 (610)
62 TIGR00714 hscB Fe-S protein as 99.3 1.2E-11 2.6E-16 84.2 6.2 50 53-102 3-61 (157)
63 KOG1150 Predicted molecular ch 99.2 1.9E-11 4.2E-16 85.9 4.9 60 39-98 51-115 (250)
64 COG5269 ZUO1 Ribosome-associat 99.1 1.2E-10 2.7E-15 85.3 4.6 65 38-102 40-113 (379)
65 KOG0723 Molecular chaperone (D 98.8 1.3E-08 2.7E-13 65.0 5.3 56 38-93 53-108 (112)
66 KOG0568 Molecular chaperone (D 98.7 2.8E-08 6.1E-13 71.7 4.2 54 39-92 45-102 (342)
67 KOG1789 Endocytosis protein RM 98.6 4.4E-08 9.5E-13 82.4 5.3 54 38-91 1278-1336(2235)
68 KOG3192 Mitochondrial J-type c 98.3 7.6E-07 1.7E-11 60.5 3.9 63 38-100 5-78 (168)
69 COG1076 DjlA DnaJ-domain-conta 97.5 5.6E-05 1.2E-09 52.1 2.2 50 41-90 113-173 (174)
70 COG1076 DjlA DnaJ-domain-conta 97.4 9.7E-05 2.1E-09 50.9 2.4 59 42-100 2-71 (174)
71 PF03656 Pam16: Pam16; InterP 97.4 0.00036 7.9E-09 46.1 5.0 57 38-94 55-111 (127)
72 KOG0431 Auxilin-like protein a 96.9 0.0014 3E-08 51.5 4.1 41 49-89 396-447 (453)
73 PF11833 DUF3353: Protein of u 95.5 0.039 8.5E-07 38.9 5.3 38 50-91 1-38 (194)
74 PF13446 RPT: A repeated domai 94.5 0.091 2E-06 30.0 4.1 44 41-91 5-48 (62)
75 KOG0724 Zuotin and related mol 93.0 0.12 2.7E-06 38.6 3.5 48 53-100 4-59 (335)
76 KOG3442 Uncharacterized conser 90.3 0.57 1.2E-05 30.9 3.9 51 40-90 58-108 (132)
77 PF14687 DUF4460: Domain of un 90.3 0.8 1.7E-05 29.5 4.6 43 51-93 4-54 (112)
78 COG5552 Uncharacterized conser 89.6 2.2 4.8E-05 25.8 5.8 37 40-76 2-38 (88)
79 PF10041 DUF2277: Uncharacteri 80.8 10 0.00022 22.9 5.6 37 40-76 2-38 (78)
80 PF07709 SRR: Seven Residue Re 71.5 2.9 6.2E-05 16.9 1.1 13 79-91 2-14 (14)
81 cd01388 SOX-TCF_HMG-box SOX-TC 66.8 19 0.00041 20.6 4.4 40 60-100 14-53 (72)
82 PF07739 TipAS: TipAS antibiot 65.4 20 0.00043 22.2 4.6 48 48-100 51-99 (118)
83 cd01390 HMGB-UBF_HMG-box HMGB- 54.2 35 0.00076 18.6 4.4 37 61-98 14-50 (66)
84 PF12434 Malate_DH: Malate deh 50.8 22 0.00048 17.2 2.2 18 54-71 9-26 (28)
85 PF15178 TOM_sub5: Mitochondri 48.4 38 0.00082 18.6 3.2 24 44-67 2-25 (51)
86 cd01389 MATA_HMG-box MATA_HMG- 47.8 54 0.0012 18.9 4.3 39 59-98 13-51 (77)
87 cd00084 HMG-box High Mobility 46.1 48 0.001 17.9 4.4 40 59-99 12-51 (66)
88 PF08447 PAS_3: PAS fold; Int 43.6 5.9 0.00013 22.8 -0.5 31 40-74 5-36 (91)
89 COG0089 RplW Ribosomal protein 41.3 27 0.00059 21.9 2.2 20 46-65 25-44 (94)
90 PF12725 DUF3810: Protein of u 40.2 86 0.0019 23.6 5.2 53 41-93 82-149 (318)
91 PF03820 Mtc: Tricarboxylate c 39.0 65 0.0014 24.4 4.3 24 51-74 46-69 (308)
92 KOG2320 RAS effector RIN1 (con 38.5 52 0.0011 27.3 3.9 38 47-89 395-432 (651)
93 PF00505 HMG_box: HMG (high mo 36.8 65 0.0014 17.7 3.2 37 59-96 12-48 (69)
94 COG3195 Uncharacterized protei 36.2 92 0.002 21.7 4.3 40 50-89 41-118 (176)
95 CHL00030 rpl23 ribosomal prote 35.8 38 0.00082 21.1 2.2 20 46-65 23-42 (93)
96 KOG0527 HMG-box transcription 34.6 63 0.0014 24.7 3.7 42 59-101 74-115 (331)
97 COG2879 Uncharacterized small 33.9 89 0.0019 18.2 3.4 25 61-85 27-53 (65)
98 TIGR03636 L23_arch archaeal ri 31.1 52 0.0011 19.7 2.2 20 46-65 18-37 (77)
99 PF10475 DUF2450: Protein of u 27.8 1.2E+02 0.0025 22.3 4.1 33 56-94 182-214 (291)
100 PF00076 RRM_1: RNA recognitio 27.7 52 0.0011 17.6 1.8 23 46-68 3-25 (70)
101 PRK05738 rplW 50S ribosomal pr 27.4 64 0.0014 19.8 2.2 20 46-65 24-43 (92)
102 PF12481 DUF3700: Aluminium in 27.3 67 0.0015 23.3 2.6 26 65-92 91-116 (228)
103 cd01780 PLC_epsilon_RA Ubiquit 26.7 78 0.0017 19.8 2.5 34 41-74 11-44 (93)
104 KOG3960 Myogenic helix-loop-he 26.1 44 0.00094 24.8 1.5 14 78-91 128-141 (284)
105 cd07356 HN_L-whirlin_R1_like F 25.6 1.6E+02 0.0035 17.8 4.0 37 59-99 21-57 (78)
106 PF04967 HTH_10: HTH DNA bindi 24.7 25 0.00054 19.5 0.0 26 41-66 27-52 (53)
107 smart00441 FF Contains two con 24.6 1.2E+02 0.0026 16.0 3.6 45 57-101 2-51 (55)
108 PRK14548 50S ribosomal protein 24.2 80 0.0017 19.2 2.2 20 46-65 25-44 (84)
109 PF04282 DUF438: Family of unk 23.7 42 0.00092 19.9 0.9 27 47-73 7-33 (71)
110 PF11590 DNAPolymera_Pol: DNA 23.7 95 0.0021 16.4 2.1 14 77-90 27-40 (41)
111 TIGR03759 conj_TIGR03759 integ 23.0 77 0.0017 22.6 2.2 50 39-90 35-85 (200)
112 PF06975 DUF1299: Protein of u 22.5 23 0.00049 19.0 -0.4 12 83-94 9-20 (47)
113 PF11126 Phage_DsbA: Transcrip 22.3 1E+02 0.0022 18.2 2.3 31 60-90 35-66 (69)
114 PF00880 Nebulin: Nebulin repe 22.3 90 0.002 14.5 1.8 24 79-102 4-27 (29)
115 KOG3767 Sideroflexin [General 21.2 1.1E+02 0.0024 23.4 2.9 27 48-74 61-87 (328)
116 PRK10613 hypothetical protein; 21.1 38 0.00083 20.2 0.3 11 54-64 64-74 (74)
117 PF06767 Sif: Sif protein; In 20.9 2.2E+02 0.0048 21.9 4.4 41 59-99 44-84 (337)
118 PRK13798 putative OHCU decarbo 20.7 2.9E+02 0.0062 18.8 5.5 38 51-88 41-109 (166)
119 PF10769 DUF2594: Protein of u 20.5 40 0.00087 20.1 0.3 11 54-64 64-74 (74)
120 smart00360 RRM RNA recognition 20.3 1.2E+02 0.0025 15.5 2.3 20 47-66 2-21 (71)
121 smart00362 RRM_2 RNA recogniti 20.2 1.2E+02 0.0026 15.6 2.3 21 46-66 4-24 (72)
122 PRK10455 periplasmic protein; 20.1 1E+02 0.0022 21.0 2.3 21 80-101 120-140 (161)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.6e-26 Score=172.04 Aligned_cols=64 Identities=45% Similarity=0.671 Sum_probs=60.6
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-c---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSG-N---GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
..+|||+||||+++|+.+|||+|||+|+++||||+++ + +++|++|++||+||+||++|++||+.
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~f 69 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQF 69 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhcc
Confidence 4679999999999999999999999999999999997 3 77999999999999999999999974
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.4e-24 Score=160.68 Aligned_cols=65 Identities=43% Similarity=0.640 Sum_probs=61.1
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
...+|||+||||+++|+..|||+|||+|+++||||++++ .+.|+.|+.||+||+||++|+.||+.
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~ 81 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTY 81 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 456899999999999999999999999999999999976 67899999999999999999999974
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=1.6e-22 Score=153.13 Aligned_cols=62 Identities=37% Similarity=0.546 Sum_probs=58.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
..|||+||||+++|+.+|||+|||+|+++||||+++. +++|++|++||+||+||.+|+.||+
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~ 67 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDR 67 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4699999999999999999999999999999999862 5799999999999999999999997
No 4
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.87 E-value=1.7e-22 Score=155.15 Aligned_cols=63 Identities=44% Similarity=0.656 Sum_probs=60.6
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
...|||+||||+++|+.+|||+|||+|+++||||++++.++|++|++||++|+||.+|+.||+
T Consensus 26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~ 88 (421)
T PTZ00037 26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDE 88 (421)
T ss_pred cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 357999999999999999999999999999999999888999999999999999999999996
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2.1e-22 Score=152.64 Aligned_cols=63 Identities=40% Similarity=0.571 Sum_probs=59.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
.+|||+||||+++|+.+|||+|||+|+++||||++++ +++|++|++||++|+||++|+.||+.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~ 68 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQF 68 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhc
Confidence 4699999999999999999999999999999999854 67999999999999999999999973
No 6
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.4e-22 Score=147.91 Aligned_cols=64 Identities=42% Similarity=0.706 Sum_probs=60.3
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
.+..||+||||+++|+.+|||+|||+|+++||||++++ .++|++|.+||++|+||++|..||+.
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~ 66 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQY 66 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 35689999999999999999999999999999999987 68999999999999999999999973
No 7
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1e-21 Score=149.78 Aligned_cols=63 Identities=33% Similarity=0.501 Sum_probs=59.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
.+|||+||||+++|+.+|||+|||+|+++||||++++ +++|++|++||++|+||++|+.||+.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~ 74 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDET 74 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHh
Confidence 4799999999999999999999999999999999863 57999999999999999999999973
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.9e-21 Score=147.38 Aligned_cols=62 Identities=37% Similarity=0.576 Sum_probs=58.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
..|||+||||+++|+.+|||+|||+|+++||||++++ +++|++|++||+||+||.+|+.||+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 68 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQ 68 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4699999999999999999999999999999999853 5799999999999999999999996
No 9
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.84 E-value=3.1e-21 Score=112.68 Aligned_cols=59 Identities=41% Similarity=0.669 Sum_probs=55.6
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-H----HHHHHHHHHHHHcCChhhHHhhh
Q 042724 42 DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-G----RDFIEIQNSYATLSDPTARAVYD 100 (103)
Q Consensus 42 d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~----~~~~~i~~Ay~~L~d~~~R~~Yd 100 (103)
|||+||||+++++.++|+++|+++++++|||+.+. . +.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 68999999999999999999999999999999644 3 68999999999999999999998
No 10
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=4.3e-21 Score=145.28 Aligned_cols=62 Identities=45% Similarity=0.670 Sum_probs=58.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
..|||+||||+++|+.+|||+|||+|+++||||+++. +++|++|++||++|+||.+|+.||+
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 69 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDR 69 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhh
Confidence 4699999999999999999999999999999999853 5699999999999999999999996
No 11
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=5e-21 Score=145.04 Aligned_cols=62 Identities=44% Similarity=0.728 Sum_probs=58.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
..|||+||||+++|+.+|||+|||+++++||||++++ +++|++|++||++|+||.+|+.||+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~ 67 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQ 67 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHh
Confidence 4699999999999999999999999999999999854 5789999999999999999999996
No 12
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=6.6e-21 Score=140.37 Aligned_cols=62 Identities=39% Similarity=0.655 Sum_probs=58.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
..|||+||||+++|+.+|||+|||+++++||||++++ +++|++|++||++|+||.+|+.||+
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~ 67 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDT 67 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 4699999999999999999999999999999999864 6799999999999999999999996
No 13
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=6.1e-21 Score=144.93 Aligned_cols=62 Identities=40% Similarity=0.660 Sum_probs=58.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
..|||+||||+++|+.+|||+|||+|+++||||++++ +++|++|++||++|+||.+|+.||+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 67 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQ 67 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhh
Confidence 4699999999999999999999999999999999864 6799999999999999999999996
No 14
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=7e-21 Score=144.50 Aligned_cols=62 Identities=47% Similarity=0.677 Sum_probs=58.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
..|||+||||+++|+.+|||+|||+|+++||||++++ +++|++|++||++|+||.+|+.||+
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~ 68 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQ 68 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhh
Confidence 5799999999999999999999999999999999853 6799999999999999999999996
No 15
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=7.4e-21 Score=144.39 Aligned_cols=63 Identities=41% Similarity=0.632 Sum_probs=59.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
.+|||+||||+++|+.+|||+|||+|+++||||++++ +++|++|++||++|+||.+|+.||+.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~ 69 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRF 69 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhc
Confidence 4699999999999999999999999999999999854 67999999999999999999999963
No 16
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1e-20 Score=143.11 Aligned_cols=63 Identities=37% Similarity=0.496 Sum_probs=58.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
..|||+||||+++|+.+|||+|||+|+++||||++++ +++|++|++||++|+||.+|..||+.
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~ 68 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRF 68 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhc
Confidence 3699999999999999999999999999999999863 56899999999999999999999973
No 17
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.1e-20 Score=143.94 Aligned_cols=62 Identities=42% Similarity=0.600 Sum_probs=58.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
..|||+||||+++|+.+|||+|||+|+++||||++++ +++|++|++||++|+||.+|+.||+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 4699999999999999999999999999999999853 5799999999999999999999997
No 18
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.1e-20 Score=143.41 Aligned_cols=61 Identities=39% Similarity=0.614 Sum_probs=58.2
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
.|||+||||+++|+.+|||+|||+|+++||||++++ +++|++|++||++|+||.+|+.||+
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~ 66 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDL 66 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhc
Confidence 699999999999999999999999999999999875 5689999999999999999999996
No 19
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.4e-20 Score=143.00 Aligned_cols=63 Identities=44% Similarity=0.705 Sum_probs=59.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
..|||+||||+++|+.++||+|||+|+++||||++++ +++|++|++||++|+||.+|+.||+.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~ 67 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQF 67 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhh
Confidence 3699999999999999999999999999999999864 67999999999999999999999963
No 20
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.5e-20 Score=143.02 Aligned_cols=62 Identities=48% Similarity=0.724 Sum_probs=58.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
..|||+||||+++|+.+|||+|||+++++||||++++ +++|++|++||++|+||.+|+.||+
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~ 69 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQ 69 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4699999999999999999999999999999999863 5689999999999999999999996
No 21
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.5e-20 Score=142.66 Aligned_cols=62 Identities=45% Similarity=0.670 Sum_probs=58.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
..|||+||||+++|+.+|||+|||+|+++||||++++ +++|++|++||++|+||.+|+.||+
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~ 67 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQ 67 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHh
Confidence 3699999999999999999999999999999999853 6899999999999999999999997
No 22
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.6e-20 Score=142.05 Aligned_cols=62 Identities=40% Similarity=0.606 Sum_probs=58.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
..|||+||||+++|+.+|||+|||+|+++||||++++ ++.|++|++||++|+||.+|+.||+
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~ 68 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQ 68 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 4799999999999999999999999999999999863 5789999999999999999999996
No 23
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.5e-20 Score=142.77 Aligned_cols=63 Identities=41% Similarity=0.605 Sum_probs=58.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
..|||+||||+++|+.+|||+|||+|+++||||+++. +++|++|++||++|+||.+|+.||+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~ 69 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQF 69 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhc
Confidence 3699999999999999999999999999999999863 57899999999999999999999963
No 24
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.3e-20 Score=142.21 Aligned_cols=62 Identities=39% Similarity=0.565 Sum_probs=58.3
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
.|||+||||+++|+.+|||+|||+++++||||++++ +++|++|++||++|+||.+|+.||+.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~ 66 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRY 66 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhc
Confidence 489999999999999999999999999999999864 67899999999999999999999963
No 25
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.2e-20 Score=141.60 Aligned_cols=63 Identities=41% Similarity=0.560 Sum_probs=58.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
..|||+||||+++|+.++||+|||+++++||||++++ +++|++|++||++|+||.+|+.||+.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~ 69 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRF 69 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhc
Confidence 4699999999999999999999999999999999863 56999999999999999999999963
No 26
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.3e-20 Score=142.83 Aligned_cols=65 Identities=43% Similarity=0.534 Sum_probs=61.0
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 37 AEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 37 ~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
....+.||+||||..+++..+||++||+|+++||||++++ .++|+.|+.||+|||||..|++||.
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~ 73 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDS 73 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHH
Confidence 3567899999999999999999999999999999999876 6799999999999999999999995
No 27
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.3e-20 Score=139.84 Aligned_cols=62 Identities=47% Similarity=0.665 Sum_probs=58.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
..|||+||||+++|+.+|||+|||+|+++||||++++ ++.|++|++||++|+||.+|+.||+
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~ 68 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQ 68 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhh
Confidence 4699999999999999999999999999999999863 5789999999999999999999996
No 28
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.7e-20 Score=135.85 Aligned_cols=65 Identities=40% Similarity=0.618 Sum_probs=60.0
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhcC
Q 042724 39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMCL 103 (103)
Q Consensus 39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 103 (103)
...|||+||||+++|+..|||+||++|+++||||.+.+ .+.|++|.+||++|+|+++|.+||..+
T Consensus 41 ~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~ 108 (288)
T KOG0715|consen 41 SKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYG 108 (288)
T ss_pred CCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 33399999999999999999999999999999999855 779999999999999999999999753
No 29
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.2e-20 Score=141.05 Aligned_cols=62 Identities=40% Similarity=0.578 Sum_probs=58.5
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
.|||+||||+++|+.+|||+|||+|+++||||++++ ++.|++|++||++|+||.+|+.||+.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~ 68 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQF 68 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 699999999999999999999999999999999864 57899999999999999999999963
No 30
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=3.9e-20 Score=133.81 Aligned_cols=63 Identities=51% Similarity=0.699 Sum_probs=59.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
..|+|+||||+++|+.++|||+||+|+++||||++++ .++|++||+||+||+||.+|..||+.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~ 96 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEY 96 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHh
Confidence 6789999999999999999999999999999999876 67999999999999999999999975
No 31
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.80 E-value=1.2e-19 Score=134.55 Aligned_cols=62 Identities=39% Similarity=0.639 Sum_probs=58.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
..|||+||||+++++.+|||+|||+++++||||++++ +++|++|++||++|+||.+|+.||.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~ 67 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQ 67 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3699999999999999999999999999999999853 6799999999999999999999996
No 32
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.1e-19 Score=137.85 Aligned_cols=61 Identities=39% Similarity=0.636 Sum_probs=58.1
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
.|||+||||+++|+.+|||+|||+++++||||++++ +++|++|++||++|+|+.+|+.||+
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 66 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDR 66 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHh
Confidence 699999999999999999999999999999999853 6799999999999999999999997
No 33
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.79 E-value=1.4e-19 Score=136.14 Aligned_cols=60 Identities=47% Similarity=0.695 Sum_probs=57.1
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 42 DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 42 d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
|||+||||+++|+.++||+||++++++||||++++ ++.|++|++||++|+||.+|..||+
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~ 63 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQ 63 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhh
Confidence 79999999999999999999999999999999853 6799999999999999999999996
No 34
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.5e-19 Score=136.65 Aligned_cols=61 Identities=39% Similarity=0.662 Sum_probs=57.9
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
.|||+||||+++|+.+|||+|||+|+++||||++++ +++|++|++||++|+||.+|+.||+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~ 68 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQ 68 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcc
Confidence 699999999999999999999999999999999853 4789999999999999999999996
No 35
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.6e-19 Score=136.69 Aligned_cols=61 Identities=44% Similarity=0.618 Sum_probs=58.2
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
.|||+||||+++|+.++||+||++++++||||++++ +++|++|++||++|+||.+|+.||+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~ 65 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDR 65 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhh
Confidence 589999999999999999999999999999999864 6799999999999999999999996
No 36
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=2.1e-19 Score=136.72 Aligned_cols=62 Identities=45% Similarity=0.624 Sum_probs=58.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
..|||+||||+++|+.+||++|||+++++||||+++. +++|++|++||++|+||.+|+.||+
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~ 69 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQ 69 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4699999999999999999999999999999999863 5789999999999999999999996
No 37
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.6e-19 Score=135.73 Aligned_cols=62 Identities=42% Similarity=0.653 Sum_probs=58.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
..|||+||||+++|+.+|||+|||+++++||||++++ +++|++|++||++|+||.+|+.||.
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~ 66 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQ 66 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 3699999999999999999999999999999999854 6899999999999999999999996
No 38
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.8e-19 Score=131.82 Aligned_cols=63 Identities=37% Similarity=0.549 Sum_probs=60.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
..|||+||||+.+++..+|++||+..+++||||++++ .+.|+.|.+||++|+|+.+|..||+.
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~ 70 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKL 70 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 6799999999999999999999999999999999976 67899999999999999999999975
No 39
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.78 E-value=6e-19 Score=101.49 Aligned_cols=55 Identities=42% Similarity=0.624 Sum_probs=51.1
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChhh
Q 042724 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSG-----NGRDFIEIQNSYATLSDPTA 95 (103)
Q Consensus 41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-----~~~~~~~i~~Ay~~L~d~~~ 95 (103)
.|||+||||+++++.++|+++|+++++.+|||+++ .++.|..|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 48999999999999999999999999999999987 36799999999999999853
No 40
>PHA03102 Small T antigen; Reviewed
Probab=99.75 E-value=1.4e-18 Score=117.72 Aligned_cols=62 Identities=15% Similarity=0.265 Sum_probs=59.3
Q ss_pred ccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 40 GRDLYEVLRVEPTT--TILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 40 ~~d~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
...+|+||||+++| +.++||+|||++++++|||++++++.|++|++||++|+|+.+|..||.
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~yd~ 67 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLD 67 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhccccc
Confidence 45689999999999 999999999999999999999999999999999999999999999986
No 41
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.9e-18 Score=123.10 Aligned_cols=66 Identities=42% Similarity=0.564 Sum_probs=60.4
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc------HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 37 AEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN------GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 37 ~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~------~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
.....|+|+||||.++|+.++|++||+++++++|||+++. .+.|+.|+.||.||+|.++|+.||++
T Consensus 10 ~f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDet 81 (264)
T KOG0719|consen 10 SFNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDET 81 (264)
T ss_pred cccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 3456699999999999999999999999999999999843 56899999999999999999999974
No 42
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.75 E-value=3.4e-18 Score=96.66 Aligned_cols=51 Identities=43% Similarity=0.658 Sum_probs=48.2
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCC
Q 042724 42 DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSD 92 (103)
Q Consensus 42 d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d 92 (103)
|||+||||+++++.++|+++|+++++++|||+.++ .+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999999874 6799999999999986
No 43
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.74 E-value=3.8e-18 Score=139.89 Aligned_cols=64 Identities=23% Similarity=0.338 Sum_probs=59.9
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
....+||+||||+++|+..+||+|||+|+++||||++++ ..+|+.|++||++|+||.+|+.||+
T Consensus 570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~ 636 (1136)
T PTZ00341 570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNK 636 (1136)
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhh
Confidence 456899999999999999999999999999999999864 5689999999999999999999996
No 44
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.2e-18 Score=132.36 Aligned_cols=64 Identities=39% Similarity=0.622 Sum_probs=59.6
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-------GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
.++.|||.+|+|+++|+.+||++|||++++.||||++-+ ++.|+.|.+||++|+||.+|..||.
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~ 76 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDN 76 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 456699999999999999999999999999999999843 6789999999999999999999995
No 45
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7.9e-18 Score=118.68 Aligned_cols=64 Identities=33% Similarity=0.535 Sum_probs=59.5
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC----ccHHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS----GNGRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~----~~~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
...-|+|+||||+++++..|||+|||+|+++||||+. ++++.|..|.+||+.|+|+..|..|..
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ek 163 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEK 163 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 5667999999999999999999999999999999995 458899999999999999999999875
No 46
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=4.1e-17 Score=112.33 Aligned_cols=63 Identities=46% Similarity=0.675 Sum_probs=59.2
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
...+||+||||.++++.+||+++|++++++||||+++. .+.|..|++||++|+|+..|..||+
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~ 71 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDK 71 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhh
Confidence 46799999999999999999999999999999999864 3789999999999999999999996
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.68 E-value=8.3e-17 Score=129.68 Aligned_cols=62 Identities=42% Similarity=0.596 Sum_probs=58.1
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
.|||+||||+++|+.++||++||+|+++||||++++ ..+|+.|++||++|+||.+|+.||..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~f 66 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKY 66 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhh
Confidence 589999999999999999999999999999999864 55899999999999999999999963
No 48
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.68 E-value=1.1e-16 Score=110.19 Aligned_cols=61 Identities=25% Similarity=0.394 Sum_probs=54.5
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 41 RDLYEVLRVEPT--TTILEIKMAYQSLAKVYHLDLSGN---------GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 41 ~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
.|||+||||++. ++..+|+++|+++++++|||+..+ .+.+..||+||++|+||.+|..|+-
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 389999999996 678999999999999999999743 3478999999999999999999974
No 49
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.67 E-value=1.8e-16 Score=108.80 Aligned_cols=61 Identities=23% Similarity=0.357 Sum_probs=54.5
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 41 RDLYEVLRVEPT--TTILEIKMAYQSLAKVYHLDLSGN-------GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 41 ~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
.|||++|||++. ++..+|+++|+++++++|||++.+ ...+..|++||++|+||.+|..|.-
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 589999999987 689999999999999999999854 1247899999999999999999964
No 50
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.63 E-value=7.5e-16 Score=106.57 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=54.7
Q ss_pred ccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 40 GRDLYEVLRVEPT--TTILEIKMAYQSLAKVYHLDLSGN---------GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 40 ~~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
..|||+||||++. ++..+|+++|+++++++|||++.. .+.+..||+||++|+||.+|..|.-
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 4799999999986 578999999999999999999753 2346899999999999999999974
No 51
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.63 E-value=7.8e-16 Score=106.24 Aligned_cols=63 Identities=21% Similarity=0.359 Sum_probs=56.2
Q ss_pred CccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 39 DGRDLYEVLRVEPT--TTILEIKMAYQSLAKVYHLDLSGN---------GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 39 ~~~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
...|||++|||++. .+..+|+++|+++++++|||++.+ .+.+..||+||++|+||.+|..|+-
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 46799999999998 567999999999999999999743 3468999999999999999999974
No 52
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.63 E-value=3e-16 Score=118.10 Aligned_cols=64 Identities=34% Similarity=0.549 Sum_probs=60.1
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-------GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
...+|||+||||.++|+..||.||||+++.+||||.+.+ +.+|..|..|-++|+||++|+.||.
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn 461 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN 461 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC
Confidence 567899999999999999999999999999999999866 4589999999999999999999996
No 53
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.62 E-value=7e-16 Score=100.08 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=50.7
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcC
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLS 91 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~ 91 (103)
....++|+||||+++++.+||+++||++++++|||+.++.+.|++|++||++|.
T Consensus 62 Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 62 MSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 345799999999999999999999999999999999988999999999999985
No 54
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.3e-15 Score=115.48 Aligned_cols=66 Identities=23% Similarity=0.322 Sum_probs=61.5
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhcC
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMCL 103 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 103 (103)
.+.+|+|.+|||+++++.++||+.||+++...||||+.. ++.|+.|+.||++|+|+++|..||..|
T Consensus 232 ~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 232 LNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred hcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 458899999999999999999999999999999999843 889999999999999999999999653
No 55
>PHA02624 large T antigen; Provisional
Probab=99.55 E-value=5.7e-15 Score=117.38 Aligned_cols=62 Identities=21% Similarity=0.378 Sum_probs=59.0
Q ss_pred CCccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhh
Q 042724 38 EDGRDLYEVLRVEPTT--TILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVY 99 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Y 99 (103)
.+..++|++|||+++| +.++||+|||+++++||||++++++.|++|++||++|+|+.+|..|
T Consensus 8 ee~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 8 EESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 3466899999999999 9999999999999999999999999999999999999999999988
No 56
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.9e-14 Score=104.20 Aligned_cols=64 Identities=31% Similarity=0.497 Sum_probs=58.7
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
...|.|+||||++.++..||.+|||+|++++|||++.+ .+.|..|..||++|.|.+.|..||=.
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence 34689999999999999999999999999999999865 56899999999999999999999843
No 57
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.46 E-value=6.7e-14 Score=102.31 Aligned_cols=55 Identities=31% Similarity=0.311 Sum_probs=49.6
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----------HHHHHHHHHHHHHcCC
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----------GRDFIEIQNSYATLSD 92 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----------~~~~~~i~~Ay~~L~d 92 (103)
....++|+||||+++++.++||++||+++++||||+..+ +++|++|++||++|+.
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999999999521 4689999999999975
No 58
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.46 E-value=2.1e-13 Score=94.15 Aligned_cols=60 Identities=20% Similarity=0.220 Sum_probs=54.0
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhhHHhhh
Q 042724 41 RDLYEVLRVEPT--TTILEIKMAYQSLAKVYHLDLSGN---------GRDFIEIQNSYATLSDPTARAVYD 100 (103)
Q Consensus 41 ~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~d~~~R~~Yd 100 (103)
.|||++|||++. .+..+++++|+++.+++|||+... .+....||+||.+|+||.+|+.|-
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YL 72 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAI 72 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHH
Confidence 589999999987 789999999999999999999743 336799999999999999999994
No 59
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=8.1e-14 Score=106.42 Aligned_cols=64 Identities=34% Similarity=0.530 Sum_probs=59.2
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
.+.+|||.||||...++..||+++||++++.+|||++.. +..|+++-+||.||+||.+|..||.
T Consensus 370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds 438 (486)
T KOG0550|consen 370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS 438 (486)
T ss_pred hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc
Confidence 457899999999999999999999999999999999843 5589999999999999999999985
No 60
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.1e-13 Score=99.27 Aligned_cols=63 Identities=38% Similarity=0.658 Sum_probs=57.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
..|+|.||||.+.|+.++|++||+++++++|||+++. +.+|++|.+||++|+|+.+|..||+.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~ 69 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQY 69 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhcccc
Confidence 4689999999999999999999999999999999754 24699999999999999999999964
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.37 E-value=5e-13 Score=103.05 Aligned_cols=64 Identities=28% Similarity=0.444 Sum_probs=58.5
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---------GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
...-|+|+||||+.+++..+||++||+|+.++||||.+. ++.+.+|++||+.|+|...|+.|-.
T Consensus 95 ~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~ 167 (610)
T COG5407 95 RRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLN 167 (610)
T ss_pred HcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 345599999999999999999999999999999999755 6789999999999999999999854
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.27 E-value=1.2e-11 Score=84.22 Aligned_cols=50 Identities=28% Similarity=0.458 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 53 TTILEIKMAYQSLAKVYHLDLSGN---------GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 53 a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
.+..+|+++|+++++++|||+..+ ...+..||+||++|+||.+|+.|.-.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 467899999999999999998632 35799999999999999999999743
No 63
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.9e-11 Score=85.89 Aligned_cols=60 Identities=25% Similarity=0.396 Sum_probs=54.9
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhHHh
Q 042724 39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTARAV 98 (103)
Q Consensus 39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R~~ 98 (103)
=+.|+|+||.|.|..+.++|++.||++++..|||++++ ...|..|.+||..|-|+..|..
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 46799999999999999999999999999999999987 4689999999999999986654
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.2e-10 Score=85.29 Aligned_cols=65 Identities=28% Similarity=0.273 Sum_probs=57.3
Q ss_pred CCccCcccccccCC---CCCHHHHHHHHHHHHHHhCCCCC---c---cHHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 38 EDGRDLYEVLRVEP---TTTILEIKMAYQSLAKVYHLDLS---G---NGRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 38 ~~~~d~y~iLgv~~---~a~~~eIk~ayr~l~~~~hPD~~---~---~~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
....|+|.+|||+. .+.+.+|.++.++.+.+||||+. | ..+.|..|+.||++|+|+..|.+||..
T Consensus 40 Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 40 WKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred hhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence 34579999999984 57888999999999999999996 2 278999999999999999999999953
No 65
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.3e-08 Score=64.97 Aligned_cols=56 Identities=21% Similarity=0.166 Sum_probs=51.1
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCCh
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDP 93 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~ 93 (103)
+..++--.||||++.++.+.||.++|++++..|||+.++...-..||+|+++|...
T Consensus 53 Msr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 53 MSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGT 108 (112)
T ss_pred cchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence 45556778999999999999999999999999999999999999999999999754
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.8e-08 Score=71.69 Aligned_cols=54 Identities=26% Similarity=0.436 Sum_probs=48.1
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHH-HcCC
Q 042724 39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYA-TLSD 92 (103)
Q Consensus 39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~-~L~d 92 (103)
.-..+|.||||..+++.++++.+|..|++++|||.+.. .+.|.+|.+||. +|+.
T Consensus 45 ~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 45 KIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999854 679999999999 6653
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=4.4e-08 Score=82.38 Aligned_cols=54 Identities=28% Similarity=0.318 Sum_probs=47.3
Q ss_pred CCccCcccccccCCC----CCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHHHHHcC
Q 042724 38 EDGRDLYEVLRVEPT----TTILEIKMAYQSLAKVYHLDLSGN-GRDFIEIQNSYATLS 91 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~----a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~i~~Ay~~L~ 91 (103)
....+.|+||.|+-+ ...++||++|++++.+|||||++. .++|..+++||+.|+
T Consensus 1278 mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1278 MSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred cchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence 455678999999843 456899999999999999999986 789999999999998
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=7.6e-07 Score=60.45 Aligned_cols=63 Identities=27% Similarity=0.422 Sum_probs=52.4
Q ss_pred CCccCcccccccCC--CCCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhhHHhhh
Q 042724 38 EDGRDLYEVLRVEP--TTTILEIKMAYQSLAKVYHLDLSGN---------GRDFIEIQNSYATLSDPTARAVYD 100 (103)
Q Consensus 38 ~~~~d~y~iLgv~~--~a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~d~~~R~~Yd 100 (103)
....+||.++|... ..++..+...|....+++|||+.+. .+....|++||.+|.||.+|+.|=
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi 78 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL 78 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34568999998764 4567777779999999999999532 567999999999999999999994
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=5.6e-05 Score=52.11 Aligned_cols=50 Identities=32% Similarity=0.388 Sum_probs=43.9
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----------HHHHHHHHHHHHHc
Q 042724 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----------GRDFIEIQNSYATL 90 (103)
Q Consensus 41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----------~~~~~~i~~Ay~~L 90 (103)
.+.|.+||+.......+|+++|+++....|||+-.. .+.+++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999998522 56788888888754
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=9.7e-05 Score=50.92 Aligned_cols=59 Identities=29% Similarity=0.465 Sum_probs=47.7
Q ss_pred CcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhhHHhhh
Q 042724 42 DLYEVLRVEPTT--TILEIKMAYQSLAKVYHLDLSGN---------GRDFIEIQNSYATLSDPTARAVYD 100 (103)
Q Consensus 42 d~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~d~~~R~~Yd 100 (103)
+++..+|..+.+ ..+.++..|+.+.+.+|||+.+. -..+..++.||.+|.||..|..|-
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~ 71 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYL 71 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 455566666554 45568999999999999999754 247899999999999999999984
No 71
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=97.43 E-value=0.00036 Score=46.08 Aligned_cols=57 Identities=16% Similarity=0.084 Sum_probs=43.0
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChh
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPT 94 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~ 94 (103)
+....-..||||++..+.++|.+.|..|-...+|+++|+...-..|..|.+.|..+.
T Consensus 55 Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 55 MTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp --HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 444577899999999999999999999999999999999888888888888876443
No 72
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.87 E-value=0.0014 Score=51.48 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=30.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHhCCCCCcc-----------HHHHHHHHHHHHH
Q 042724 49 VEPTTTILEIKMAYQSLAKVYHLDLSGN-----------GRDFIEIQNSYAT 89 (103)
Q Consensus 49 v~~~a~~~eIk~ayr~l~~~~hPD~~~~-----------~~~~~~i~~Ay~~ 89 (103)
+.-=.+.++||++||+.++..||||... ++.|-.+.+||..
T Consensus 396 ltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 396 LTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred hhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 3344689999999999999999999733 3455566666554
No 73
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=95.55 E-value=0.039 Score=38.87 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcC
Q 042724 50 EPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLS 91 (103)
Q Consensus 50 ~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~ 91 (103)
+++|++|||..|+..+..+| .+|++.-..|..||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Confidence 47899999999999999998 556788899999999865
No 74
>PF13446 RPT: A repeated domain in UCH-protein
Probab=94.53 E-value=0.091 Score=30.00 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=33.1
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcC
Q 042724 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLS 91 (103)
Q Consensus 41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~ 91 (103)
.+.|++|||+++.+.+.|-.+|+.... -.| .....+.+|..++.
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P------~~~~~~r~AL~~Ia 48 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN-DDP------SQKDTLREALRVIA 48 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh------HhHHHHHHHHHHHH
Confidence 457999999999999999999999887 222 34455566666554
No 75
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.12 Score=38.63 Aligned_cols=48 Identities=25% Similarity=0.391 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCc--------cHHHHHHHHHHHHHcCChhhHHhhh
Q 042724 53 TTILEIKMAYQSLAKVYHLDLSG--------NGRDFIEIQNSYATLSDPTARAVYD 100 (103)
Q Consensus 53 a~~~eIk~ayr~l~~~~hPD~~~--------~~~~~~~i~~Ay~~L~d~~~R~~Yd 100 (103)
++..+|..+|++.++..||++.. .++.++.|.+||++|.+.+.|..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~ 59 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPD 59 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchh
Confidence 56788999999999999999873 2667999999999999866655554
No 76
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.31 E-value=0.57 Score=30.93 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=38.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHc
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATL 90 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L 90 (103)
-..--+||+|+...+.++|.+.|..|-....+.++|+...-..|-.|-+-|
T Consensus 58 lqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErl 108 (132)
T KOG3442|consen 58 LQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERL 108 (132)
T ss_pred HHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHH
Confidence 345679999999999999999999999999999988843333344444433
No 77
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=90.30 E-value=0.8 Score=29.54 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCcc--------HHHHHHHHHHHHHcCCh
Q 042724 51 PTTTILEIKMAYQSLAKVYHLDLSGN--------GRDFIEIQNSYATLSDP 93 (103)
Q Consensus 51 ~~a~~~eIk~ayr~l~~~~hPD~~~~--------~~~~~~i~~Ay~~L~d~ 93 (103)
+..+..+++.+.|..-++.|||..++ ++-++.|+.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 34567789999999999999998754 45677777776766654
No 78
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=89.62 E-value=2.2 Score=25.78 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=29.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN 76 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~ 76 (103)
++|.-+++|++|.++..||+.+-++.+++..=-..++
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS 38 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPS 38 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcc
Confidence 4566788999999999999999999998885544443
No 79
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=80.78 E-value=10 Score=22.95 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=29.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN 76 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~ 76 (103)
++|.-.+.|+.|.++.+||+.|-.+.+++..=-..++
T Consensus 2 CRnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps 38 (78)
T PF10041_consen 2 CRNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPS 38 (78)
T ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcc
Confidence 4456677899999999999999999999886554443
No 80
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=71.54 E-value=2.9 Score=16.93 Aligned_cols=13 Identities=38% Similarity=0.756 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHcC
Q 042724 79 DFIEIQNSYATLS 91 (103)
Q Consensus 79 ~~~~i~~Ay~~L~ 91 (103)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677778887764
No 81
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=66.80 E-value=19 Score=20.64 Aligned_cols=40 Identities=10% Similarity=-0.040 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhhh
Q 042724 60 MAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYD 100 (103)
Q Consensus 60 ~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd 100 (103)
+..+...+.-||+. +..+..+.|.+.|..|++.++...++
T Consensus 14 ~~~r~~~~~~~p~~-~~~eisk~l~~~Wk~ls~~eK~~y~~ 53 (72)
T cd01388 14 KRHRRKVLQEYPLK-ENRAISKILGDRWKALSNEEKQPYYE 53 (72)
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566677789985 45788899999999999777655443
No 82
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=65.45 E-value=20 Score=22.18 Aligned_cols=48 Identities=23% Similarity=0.454 Sum_probs=32.9
Q ss_pred ccCCCCC-HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhhh
Q 042724 48 RVEPTTT-ILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYD 100 (103)
Q Consensus 48 gv~~~a~-~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd 100 (103)
|++|+.+ ..+|-+.+..++..+++ ++.+.+..|.+.| +.||.-+..||
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~---~~~~~~~~l~~~y--~~~~~~~~~~~ 99 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG---GDPELLRGLAQMY--VEDPRFAAMYD 99 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS------HHHHHHHHHHT--TSTHHHHHHHG
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHH--HcCHHHHhhcc
Confidence 5666653 44577888888887777 5677888898888 88888888877
No 83
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=54.15 E-value=35 Score=18.62 Aligned_cols=37 Identities=11% Similarity=0.013 Sum_probs=26.4
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHh
Q 042724 61 AYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAV 98 (103)
Q Consensus 61 ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~ 98 (103)
..+...+.-||+. ...+..+.|.+.|..|++.++...
T Consensus 14 ~~r~~~~~~~p~~-~~~~i~~~~~~~W~~ls~~eK~~y 50 (66)
T cd01390 14 EQRPKLKKENPDA-SVTEVTKILGEKWKELSEEEKKKY 50 (66)
T ss_pred HHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3455566678883 357788999999999996555443
No 84
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=50.78 E-value=22 Score=17.19 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 042724 54 TILEIKMAYQSLAKVYHL 71 (103)
Q Consensus 54 ~~~eIk~ayr~l~~~~hP 71 (103)
..++.+.+.|+.++.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 347789999999999993
No 85
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=48.40 E-value=38 Score=18.60 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=19.7
Q ss_pred ccccccCCCCCHHHHHHHHHHHHH
Q 042724 44 YEVLRVEPTTTILEIKMAYQSLAK 67 (103)
Q Consensus 44 y~iLgv~~~a~~~eIk~ayr~l~~ 67 (103)
|.+=|+.|..+++|.|+.-|+-+.
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHHH
Confidence 456689999999999998887544
No 86
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=47.84 E-value=54 Score=18.90 Aligned_cols=39 Identities=13% Similarity=-0.041 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHh
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAV 98 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~ 98 (103)
.+.++..++.-+|+. ...+..+.|.+.|..|++.++...
T Consensus 13 ~~~~r~~~~~~~p~~-~~~eisk~~g~~Wk~ls~eeK~~y 51 (77)
T cd01389 13 RQDKHAQLKTENPGL-TNNEISRIIGRMWRSESPEVKAYY 51 (77)
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHH
Confidence 456677788889986 356788889999999996655433
No 87
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=46.11 E-value=48 Score=17.85 Aligned_cols=40 Identities=15% Similarity=0.076 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhh
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVY 99 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Y 99 (103)
.+.++...+.-||+.. ..+....|.+.|..|++.++....
T Consensus 12 ~~~~~~~~~~~~~~~~-~~~i~~~~~~~W~~l~~~~k~~y~ 51 (66)
T cd00084 12 SQEHRAEVKAENPGLS-VGEISKILGEMWKSLSEEEKKKYE 51 (66)
T ss_pred HHHHHHHHHHHCcCCC-HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4556667777888833 466788999999999966554433
No 88
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=43.57 E-value=5.9 Score=22.84 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=20.6
Q ss_pred ccCcccccccCCCCCHHHH-HHHHHHHHHHhCCCCC
Q 042724 40 GRDLYEVLRVEPTTTILEI-KMAYQSLAKVYHLDLS 74 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eI-k~ayr~l~~~~hPD~~ 74 (103)
+.+++++||.++ +++ ...........|||=.
T Consensus 5 s~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD~ 36 (91)
T PF08447_consen 5 SDNFYEIFGYSP----EEIGKPDFEEWLERIHPDDR 36 (91)
T ss_dssp -THHHHHHTS-H----HHHTCBEHHHHHHHB-TTTH
T ss_pred eHHHHHHhCCCH----HHhccCCHHHHHhhcCHHHH
Confidence 346789999854 666 5566778888999754
No 89
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=41.26 E-value=27 Score=21.87 Aligned_cols=20 Identities=45% Similarity=0.546 Sum_probs=17.7
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 042724 46 VLRVEPTTTILEIKMAYQSL 65 (103)
Q Consensus 46 iLgv~~~a~~~eIk~ayr~l 65 (103)
+|-|+++|+..+|+.|..++
T Consensus 25 vF~V~~~AtK~~IK~AvE~l 44 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEEL 44 (94)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 57899999999999998775
No 90
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=40.22 E-value=86 Score=23.61 Aligned_cols=53 Identities=25% Similarity=0.252 Sum_probs=37.2
Q ss_pred cCcccccccCC-CCCHHHHHHHHHHHHHH-------hCCCCCc-------cHHHHHHHHHHHHHcCCh
Q 042724 41 RDLYEVLRVEP-TTTILEIKMAYQSLAKV-------YHLDLSG-------NGRDFIEIQNSYATLSDP 93 (103)
Q Consensus 41 ~d~y~iLgv~~-~a~~~eIk~ayr~l~~~-------~hPD~~~-------~~~~~~~i~~Ay~~L~d~ 93 (103)
.++++-||++. ..+.+|+.+--+.++.+ .++|..+ .++.++.+.++|+.|.+.
T Consensus 82 ~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~ 149 (318)
T PF12725_consen 82 PPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAER 149 (318)
T ss_pred cCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 35788899987 78888877666555443 3444331 167899999999998754
No 91
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=38.96 E-value=65 Score=24.36 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCC
Q 042724 51 PTTTILEIKMAYQSLAKVYHLDLS 74 (103)
Q Consensus 51 ~~a~~~eIk~ayr~l~~~~hPD~~ 74 (103)
++.+.+||-+|.+-.--.+|||.+
T Consensus 46 ~~~~~~~lw~Ak~l~~Sa~HPDTg 69 (308)
T PF03820_consen 46 PGLTDDELWKAKKLYDSAFHPDTG 69 (308)
T ss_pred CCCCHHHHHHHHHHhhcccCCCCC
Confidence 445899999999999999999987
No 92
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.54 E-value=52 Score=27.33 Aligned_cols=38 Identities=8% Similarity=0.204 Sum_probs=26.9
Q ss_pred cccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH
Q 042724 47 LRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYAT 89 (103)
Q Consensus 47 Lgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~ 89 (103)
|-++..+..|+||.++.++.+.|||.+ +.+.+.+|.+.
T Consensus 395 ~~~Ps~~~mEqvk~k~~~m~r~YSP~k-----kl~~Llk~ckL 432 (651)
T KOG2320|consen 395 LSTPSDVLMEQVKQKFTAMQRRYSPSK-----KLHALLKACKL 432 (651)
T ss_pred ccCCcHHHHHHHHHHHHHHHHhhChHH-----HHHHHHHHHHH
Confidence 344455678899999999999999964 34444444443
No 93
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=36.79 E-value=65 Score=17.71 Aligned_cols=37 Identities=19% Similarity=0.061 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhH
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTAR 96 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R 96 (103)
...++...+.-||+.. ..+..+.|.+.|..|++.++.
T Consensus 12 ~~~~~~~~k~~~p~~~-~~~i~~~~~~~W~~l~~~eK~ 48 (69)
T PF00505_consen 12 CKEKRAKLKEENPDLS-NKEISKILAQMWKNLSEEEKA 48 (69)
T ss_dssp HHHHHHHHHHHSTTST-HHHHHHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHHhcccc-cccchhhHHHHHhcCCHHHHH
Confidence 3445566667799876 567788899999999855443
No 94
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.19 E-value=92 Score=21.70 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHH-----------HHHHhCCCCCcc---------------------------HHHHHHHHHHHHH
Q 042724 50 EPTTTILEIKMAYQS-----------LAKVYHLDLSGN---------------------------GRDFIEIQNSYAT 89 (103)
Q Consensus 50 ~~~a~~~eIk~ayr~-----------l~~~~hPD~~~~---------------------------~~~~~~i~~Ay~~ 89 (103)
.+.++.+++..+... -+++-|||..+. .++|..||++|..
T Consensus 41 ~pf~s~~~l~~am~~~v~~A~~~~rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~~ 118 (176)
T COG3195 41 RPFASAEGLHAAMCRAVRAASEEERLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYVE 118 (176)
T ss_pred CCcCCHHHHHHHHHHHHHcCCHHHHHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHHH
Confidence 566777777766644 345669998632 3579999999963
No 95
>CHL00030 rpl23 ribosomal protein L23
Probab=35.83 E-value=38 Score=21.05 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=17.7
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 042724 46 VLRVEPTTTILEIKMAYQSL 65 (103)
Q Consensus 46 iLgv~~~a~~~eIk~ayr~l 65 (103)
+|-|+++|+..|||+|..++
T Consensus 23 ~F~V~~~anK~eIK~avE~l 42 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELF 42 (93)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 56799999999999999776
No 96
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=34.58 E-value=63 Score=24.72 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
.+..|+.+-+-.||-+ +.|..++|-+-|+.|++.++|=.+|.
T Consensus 74 Sq~~RRkma~qnP~mH-NSEISK~LG~~WK~Lse~EKrPFi~E 115 (331)
T KOG0527|consen 74 SQGQRRKLAKQNPKMH-NSEISKRLGAEWKLLSEEEKRPFVDE 115 (331)
T ss_pred hHHHHHHHHHhCcchh-hHHHHHHHHHHHhhcCHhhhccHHHH
Confidence 4555666666777764 67899999999999999999977763
No 97
>COG2879 Uncharacterized small protein [Function unknown]
Probab=33.87 E-value=89 Score=18.21 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCCCcc--HHHHHHHHH
Q 042724 61 AYQSLAKVYHLDLSGN--GRDFIEIQN 85 (103)
Q Consensus 61 ayr~l~~~~hPD~~~~--~~~~~~i~~ 85 (103)
.|-+-+++-|||+.+- ++-|++-.+
T Consensus 27 nYVehmr~~hPd~p~mT~~EFfrec~d 53 (65)
T COG2879 27 NYVEHMRKKHPDKPPMTYEEFFRECQD 53 (65)
T ss_pred HHHHHHHHhCcCCCcccHHHHHHHHHH
Confidence 4667788899999864 445554443
No 98
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=31.07 E-value=52 Score=19.68 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=17.4
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 042724 46 VLRVEPTTTILEIKMAYQSL 65 (103)
Q Consensus 46 iLgv~~~a~~~eIk~ayr~l 65 (103)
.+-|+++++..|||+|..++
T Consensus 18 ~F~V~~~anK~eIK~avE~l 37 (77)
T TIGR03636 18 TFIVDRKATKGDIKRAVEKL 37 (77)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 46789999999999998876
No 99
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=27.76 E-value=1.2e+02 Score=22.33 Aligned_cols=33 Identities=9% Similarity=0.291 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChh
Q 042724 56 LEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPT 94 (103)
Q Consensus 56 ~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~ 94 (103)
+.+...+.+++..+.| +.|..|.+||..|++..
T Consensus 182 ~~ld~~l~~~~~~Fd~------~~Y~~v~~AY~lLgk~~ 214 (291)
T PF10475_consen 182 EQLDSDLSKVCQDFDP------DKYSKVQEAYQLLGKTQ 214 (291)
T ss_pred HHHHHHHHHHHHhCCH------HHHHHHHHHHHHHhhhH
Confidence 3455666666665554 67899999999999653
No 100
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=27.71 E-value=52 Score=17.62 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=18.3
Q ss_pred ccccCCCCCHHHHHHHHHHHHHH
Q 042724 46 VLRVEPTTTILEIKMAYQSLAKV 68 (103)
Q Consensus 46 iLgv~~~a~~~eIk~ayr~l~~~ 68 (103)
|=+|+++++.++|+..|.+....
T Consensus 3 v~nlp~~~t~~~l~~~f~~~g~i 25 (70)
T PF00076_consen 3 VGNLPPDVTEEELRDFFSQFGKI 25 (70)
T ss_dssp EESETTTSSHHHHHHHHHTTSTE
T ss_pred EcCCCCcCCHHHHHHHHHHhhhc
Confidence 44789999999999998875443
No 101
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=27.40 E-value=64 Score=19.83 Aligned_cols=20 Identities=45% Similarity=0.546 Sum_probs=17.4
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 042724 46 VLRVEPTTTILEIKMAYQSL 65 (103)
Q Consensus 46 iLgv~~~a~~~eIk~ayr~l 65 (103)
.|-|++.++..|||++..++
T Consensus 24 ~F~V~~~a~K~eIK~aie~l 43 (92)
T PRK05738 24 VFEVAPDATKPEIKAAVEKL 43 (92)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 56789999999999998775
No 102
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=27.30 E-value=67 Score=23.33 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=14.6
Q ss_pred HHHHhCCCCCccHHHHHHHHHHHHHcCC
Q 042724 65 LAKVYHLDLSGNGRDFIEIQNSYATLSD 92 (103)
Q Consensus 65 l~~~~hPD~~~~~~~~~~i~~Ay~~L~d 92 (103)
|.++|.=.|..++. ..|.|||++|.|
T Consensus 91 L~qqYGLsK~~nEa--~~vIEAYrtLRD 116 (228)
T PF12481_consen 91 LRQQYGLSKGANEA--MFVIEAYRTLRD 116 (228)
T ss_pred HHHHhCcCcCcchh--hhHHHHHHHhhc
Confidence 33445554443333 347788888875
No 103
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=26.72 E-value=78 Score=19.82 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=24.4
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC
Q 042724 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLS 74 (103)
Q Consensus 41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~ 74 (103)
..+|.||.++...+..+|-+.--..+.+-+||-.
T Consensus 11 dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~ 44 (93)
T cd01780 11 DQPYAILRAPRVSTAQDVIQQTLCKARRSNPNPS 44 (93)
T ss_pred CCCeeEEEccccccHHHHHHHHHHHhccCCCCcc
Confidence 3579999999999888866555455555566654
No 104
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=26.06 E-value=44 Score=24.85 Aligned_cols=14 Identities=21% Similarity=0.548 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHcC
Q 042724 78 RDFIEIQNSYATLS 91 (103)
Q Consensus 78 ~~~~~i~~Ay~~L~ 91 (103)
.+.++||+|+|+|+
T Consensus 128 RRLkKVNEAFE~LK 141 (284)
T KOG3960|consen 128 RRLKKVNEAFETLK 141 (284)
T ss_pred HHHHHHHHHHHHHH
Confidence 36899999999975
No 105
>cd07356 HN_L-whirlin_R1_like First harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains. This subgroup contains the first of two harmonin_N_like domains of the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. This first harmonin_N_like domain precedes PDZ1, and is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. This first harmonin_N_like domain has been assayed for interaction with the cytoplasmic domain of cadherin 23 (a component of the Usher network and an interacting partner of the harmonin N-domain), however no interaction could be detected. Th
Probab=25.59 E-value=1.6e+02 Score=17.75 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhh
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVY 99 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Y 99 (103)
++.|.....-||-+++ .+..+..---+|-+|++|+.+
T Consensus 21 r~~f~h~Ln~Y~~~Rn----V~~Lv~sL~~vLd~P~Krqll 57 (78)
T cd07356 21 REEFIHCLNDYHAKRN----VYDLVQSLKVVLDTPEKRQLL 57 (78)
T ss_pred HHHHHHHHHHHHhccc----HHHHHHHHHHHhCCHhHhHHH
Confidence 4556666667777664 455566666778899998875
No 106
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=24.67 E-value=25 Score=19.54 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=18.9
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHH
Q 042724 41 RDLYEVLRVEPTTTILEIKMAYQSLA 66 (103)
Q Consensus 41 ~d~y~iLgv~~~a~~~eIk~ayr~l~ 66 (103)
.+.=+.|||++.+-.+-|+++-+++.
T Consensus 27 ~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 27 EELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 35556788888777777888877764
No 107
>smart00441 FF Contains two conserved F residues. A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.
Probab=24.61 E-value=1.2e+02 Score=15.98 Aligned_cols=45 Identities=20% Similarity=0.272 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCCCCcc--HH--HHHHHHHHH-HHcCChhhHHhhhh
Q 042724 57 EIKMAYQSLAKVYHLDLSGN--GR--DFIEIQNSY-ATLSDPTARAVYDM 101 (103)
Q Consensus 57 eIk~ayr~l~~~~hPD~~~~--~~--~~~~i~~Ay-~~L~d~~~R~~Yd~ 101 (103)
+.+.+|++|.....-+.... .+ ..-.-...| .++++..++..|+.
T Consensus 2 ~~~~~F~~LL~e~~~~~~~~~W~~~~~~~~~d~ry~~l~~~~~r~~lF~~ 51 (55)
T smart00441 2 EAKEAFKELLKEHEVITPDTTWSEARKKLKNDPRYKALLSESEREQLFED 51 (55)
T ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHhcChHHHHhcChHHHHHHHHH
Confidence 56788999887764442222 12 222223345 44555555555554
No 108
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=24.20 E-value=80 Score=19.20 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=17.4
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 042724 46 VLRVEPTTTILEIKMAYQSL 65 (103)
Q Consensus 46 iLgv~~~a~~~eIk~ayr~l 65 (103)
.|-|++.|+..+||+|..++
T Consensus 25 ~F~V~~~anK~eIK~AvE~l 44 (84)
T PRK14548 25 TFIVDRRATKPDIKRAVEEL 44 (84)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 46789999999999998876
No 109
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=23.68 E-value=42 Score=19.86 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=20.5
Q ss_pred cccCCCCCHHHHHHHHHHHHHHhCCCC
Q 042724 47 LRVEPTTTILEIKMAYQSLAKVYHLDL 73 (103)
Q Consensus 47 Lgv~~~a~~~eIk~ayr~l~~~~hPD~ 73 (103)
+.+..+.+.++||+.|.+......|--
T Consensus 7 ~~Lh~G~~~e~vk~~F~~~~~~Vs~~E 33 (71)
T PF04282_consen 7 KRLHEGEDPEEVKEEFKKLFSDVSASE 33 (71)
T ss_pred HHHhCCCCHHHHHHHHHHHHCCCCHHH
Confidence 456778899999999998877666543
No 110
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=23.66 E-value=95 Score=16.42 Aligned_cols=14 Identities=7% Similarity=0.230 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHc
Q 042724 77 GRDFIEIQNSYATL 90 (103)
Q Consensus 77 ~~~~~~i~~Ay~~L 90 (103)
++.-++++.|++||
T Consensus 27 eEt~qkL~~AF~iL 40 (41)
T PF11590_consen 27 EETRQKLRRAFDIL 40 (41)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 45677788888877
No 111
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=23.01 E-value=77 Score=22.60 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=29.9
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHH-HHHHHHHHHc
Q 042724 39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGNGRDF-IEIQNSYATL 90 (103)
Q Consensus 39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~-~~i~~Ay~~L 90 (103)
++.|+-.+|||+...+.| +..|-++..+-.-++...+-.| +.+.+||.-|
T Consensus 35 PgLdPLtaLGIeArsd~E--RrryAEl~vk~E~~rvekeLA~qrayd~A~~RL 85 (200)
T TIGR03759 35 PGLDPLTALGIEARSDEE--RRRYAELWVKQEAQRVEKELAFQRAYDAAWQRL 85 (200)
T ss_pred CCCChhhhhccccCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446999999998776665 7888877765433332222223 3344455544
No 112
>PF06975 DUF1299: Protein of unknown function (DUF1299); InterPro: IPR010725 This entry represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that many proteins contain multiple copies of this region.
Probab=22.45 E-value=23 Score=18.99 Aligned_cols=12 Identities=42% Similarity=0.509 Sum_probs=9.4
Q ss_pred HHHHHHHcCChh
Q 042724 83 IQNSYATLSDPT 94 (103)
Q Consensus 83 i~~Ay~~L~d~~ 94 (103)
=++||-+|||.+
T Consensus 9 dqeayvilsdde 20 (47)
T PF06975_consen 9 DQEAYVILSDDE 20 (47)
T ss_pred hhhheeeccccc
Confidence 367999999864
No 113
>PF11126 Phage_DsbA: Transcriptional regulator DsbA; InterPro: IPR020313 DsbA is a double stranded binding protein found in bacteriophage T4 which is involved in transcriptional regulation. DsbA, along with other viral proteins, interacts with the host RNA polymerase core enzyme enabling initiation of transcription. DsbA acts as an enhancer protein of late genes in vitro. The protein consists of mainly alpha helices [].
Probab=22.32 E-value=1e+02 Score=18.23 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCCCCcc-HHHHHHHHHHHHHc
Q 042724 60 MAYQSLAKVYHLDLSGN-GRDFIEIQNSYATL 90 (103)
Q Consensus 60 ~ayr~l~~~~hPD~~~~-~~~~~~i~~Ay~~L 90 (103)
+-|.++...||-+.... ++.-.++.+.|+.+
T Consensus 35 k~Fnkl~~lyHk~~Re~fE~e~ee~~elYD~~ 66 (69)
T PF11126_consen 35 KMFNKLLKLYHKQEREEFEAENEEVVELYDAV 66 (69)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45788889999876644 45667777777765
No 114
>PF00880 Nebulin: Nebulin repeat; InterPro: IPR000900 Nebulin is a 600-800kDa protein found in the thin filaments of striated vertebrate muscle. It is presumed to play a role in binding and stabilising F-actin [], essentially by providing a template for actin polymerisation (i.e., acting as an "actin zipper"). The amino acid sequence shows a uniform repeating pattern along its length, a repeated 35-residue motif constituting up to 97% of the polypeptide. Analysis of individual repeats reveals a progressive N- to C-terminal divergence, coupled with an increasing alpha-helix propensity. This correlates with a higher binding affinity for F-actin at the C terminus. Thus, it is postulated that once the repeats have formed an initiation complex, the whole length of the nebulin molecule may then associate in a highly co-operative process with the thin filament, in a manner similar to the closing of a zipper [].
Probab=22.28 E-value=90 Score=14.50 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCChhhHHhhhhc
Q 042724 79 DFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 79 ~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
.+....++.+++||-.=|..|++.
T Consensus 4 ~~~~ak~~~~~~Sd~~Yk~~~ek~ 27 (29)
T PF00880_consen 4 EMVHAKKAAQLQSDVKYKEDYEKS 27 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466778888999998888888764
No 115
>KOG3767 consensus Sideroflexin [General function prediction only]
Probab=21.21 E-value=1.1e+02 Score=23.39 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=24.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhCCCCC
Q 042724 48 RVEPTTTILEIKMAYQSLAKVYHLDLS 74 (103)
Q Consensus 48 gv~~~a~~~eIk~ayr~l~~~~hPD~~ 74 (103)
.++++.+.+|+=+|.+..--.+|||.+
T Consensus 61 ~~~p~~t~~~lW~Akkl~dS~~HPDTg 87 (328)
T KOG3767|consen 61 KVPPGLTDDELWKAKKLYDSTFHPDTG 87 (328)
T ss_pred CcCCCCcHHHHHHHHHHHhcccCCCCC
Confidence 566778899999999999999999997
No 116
>PRK10613 hypothetical protein; Provisional
Probab=21.11 E-value=38 Score=20.21 Aligned_cols=11 Identities=45% Similarity=0.706 Sum_probs=8.3
Q ss_pred CHHHHHHHHHH
Q 042724 54 TILEIKMAYQS 64 (103)
Q Consensus 54 ~~~eIk~ayr~ 64 (103)
+.++||.+||+
T Consensus 64 Tv~QIK~aYRq 74 (74)
T PRK10613 64 TVKQIKQAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 56788888874
No 117
>PF06767 Sif: Sif protein; InterPro: IPR010637 This family consists of several SifA and SifB and SseJ proteins, which seem to be specific to the Salmonella species. SifA, SifB and SseJ have been demonstrated to localise to the Salmonella-containing vacuole (SCV) and to Salmonella-induced filaments (Sifs). Trafficking of SseJ and SifB away from the SCV requires the SPI-2 effector SifA. SseJ trafficking away from the SCV along Sifs is unnecessary for its virulence function [].; PDB: 3HW2_A 3CXB_A.
Probab=20.93 E-value=2.2e+02 Score=21.86 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhh
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVY 99 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Y 99 (103)
.+|..-+...+||+..+..+.+..+-.+.+.|.-|.-|..+
T Consensus 44 aeA~~cI~eLc~~~~~pT~~~l~~iF~~LKeLAspg~Kd~F 84 (337)
T PF06767_consen 44 AEALECIFELCHPDPPPTRERLEDIFFELKELASPGYKDRF 84 (337)
T ss_dssp HHHHHHHHHHHSSSS---HHHHHHHHHHHHHHC-HHHHTTE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCchhhhce
Confidence 56788888899999988888888888888888888877653
No 118
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=20.72 E-value=2.9e+02 Score=18.83 Aligned_cols=38 Identities=13% Similarity=0.029 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHHH-----------HHHHhCCCCCcc--------------------HHHHHHHHHHHH
Q 042724 51 PTTTILEIKMAYQS-----------LAKVYHLDLSGN--------------------GRDFIEIQNSYA 88 (103)
Q Consensus 51 ~~a~~~eIk~ayr~-----------l~~~~hPD~~~~--------------------~~~~~~i~~Ay~ 88 (103)
|-++.+++..+..+ -++..|||..+. .+.+..+|.+|+
T Consensus 41 Pf~s~~~L~~a~~~~~~~~~~~~~~~~l~~HP~lg~~~~~~~S~~EQ~gl~~l~~~~~~~l~~lN~~Y~ 109 (166)
T PRK13798 41 PFADHDALLAAADEALAGLSEADIDEALAGHPRIGERPASKASAREQAGVADADEAVMAALAAGNRAYE 109 (166)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCcccCccccccCHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 34455555555544 345679998731 347888999987
No 119
>PF10769 DUF2594: Protein of unknown function (DUF2594); InterPro: IPR019705 This entry represents proteins with unknown function and appear to be restricted to Enterobacteriaceae.
Probab=20.48 E-value=40 Score=20.12 Aligned_cols=11 Identities=55% Similarity=0.745 Sum_probs=8.3
Q ss_pred CHHHHHHHHHH
Q 042724 54 TILEIKMAYQS 64 (103)
Q Consensus 54 ~~~eIk~ayr~ 64 (103)
+.++||.+||+
T Consensus 64 Ti~QIK~aYRq 74 (74)
T PF10769_consen 64 TIKQIKTAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 56788888874
No 120
>smart00360 RRM RNA recognition motif.
Probab=20.32 E-value=1.2e+02 Score=15.51 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=16.1
Q ss_pred cccCCCCCHHHHHHHHHHHH
Q 042724 47 LRVEPTTTILEIKMAYQSLA 66 (103)
Q Consensus 47 Lgv~~~a~~~eIk~ayr~l~ 66 (103)
-||+...+.++|+..+....
T Consensus 2 ~~l~~~~~~~~l~~~f~~~g 21 (71)
T smart00360 2 GNLPPDVTEEELRELFSKFG 21 (71)
T ss_pred CCCCcccCHHHHHHHHHhhC
Confidence 46788889999999988654
No 121
>smart00362 RRM_2 RNA recognition motif.
Probab=20.16 E-value=1.2e+02 Score=15.58 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=17.0
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 042724 46 VLRVEPTTTILEIKMAYQSLA 66 (103)
Q Consensus 46 iLgv~~~a~~~eIk~ayr~l~ 66 (103)
|-||+...+.++|+..+.+..
T Consensus 4 i~~l~~~~~~~~l~~~~~~~g 24 (72)
T smart00362 4 VGNLPPDVTEEDLKELFSKFG 24 (72)
T ss_pred EcCCCCcCCHHHHHHHHHhcC
Confidence 557888999999999887653
No 122
>PRK10455 periplasmic protein; Reviewed
Probab=20.09 E-value=1e+02 Score=20.97 Aligned_cols=21 Identities=14% Similarity=0.387 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCChhhHHhhhh
Q 042724 80 FIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 80 ~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
.+.-++.|.+|. |+.|..|+.
T Consensus 120 ~~~~~qiy~vLT-PEQr~q~~~ 140 (161)
T PRK10455 120 METQNKIYNVLT-PEQKKQFNA 140 (161)
T ss_pred HHHHHHHHHhCC-HHHHHHHHH
Confidence 344455688777 888888875
Done!