Query 042724
Match_columns 103
No_of_seqs 161 out of 1763
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 15:21:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yua_A Williams-beuren syndrom 99.9 5E-24 1.7E-28 133.9 8.6 69 35-103 11-83 (99)
2 1hdj_A Human HSP40, HDJ-1; mol 99.9 2.4E-23 8.2E-28 125.2 7.4 63 40-102 2-67 (77)
3 2och_A Hypothetical protein DN 99.9 2.3E-23 8E-28 124.2 7.2 65 38-102 5-70 (73)
4 2dn9_A DNAJ homolog subfamily 99.9 2.8E-23 9.4E-28 125.4 7.2 65 38-102 4-72 (79)
5 2ctp_A DNAJ homolog subfamily 99.9 2.4E-23 8.2E-28 125.5 6.8 65 38-102 4-71 (78)
6 1wjz_A 1700030A21RIK protein; 99.9 1.6E-23 5.3E-28 130.1 5.9 66 38-103 13-88 (94)
7 2cug_A Mkiaa0962 protein; DNAJ 99.9 5.9E-23 2E-27 126.5 8.0 65 38-102 14-81 (88)
8 2ej7_A HCG3 gene; HCG3 protein 99.9 4.2E-23 1.4E-27 125.4 7.2 64 39-102 7-75 (82)
9 2ctr_A DNAJ homolog subfamily 99.9 3.6E-23 1.2E-27 127.5 7.0 65 38-102 4-71 (88)
10 2ctq_A DNAJ homolog subfamily 99.9 6.4E-23 2.2E-27 131.5 7.5 65 38-102 17-85 (112)
11 2o37_A Protein SIS1; HSP40, J- 99.9 6.5E-23 2.2E-27 127.3 6.9 64 39-102 6-70 (92)
12 2ctw_A DNAJ homolog subfamily 99.9 2.2E-22 7.4E-27 128.5 8.9 65 38-102 14-82 (109)
13 2dmx_A DNAJ homolog subfamily 99.9 1.1E-22 3.8E-27 126.1 6.0 64 39-102 7-75 (92)
14 2lgw_A DNAJ homolog subfamily 99.9 2.6E-22 8.8E-27 126.3 6.2 62 41-102 2-68 (99)
15 1bq0_A DNAJ, HSP40; chaperone, 99.9 1.9E-22 6.5E-27 127.4 4.4 63 40-102 2-68 (103)
16 2qsa_A DNAJ homolog DNJ-2; J-d 99.9 2.2E-22 7.4E-27 128.3 4.2 65 38-102 12-84 (109)
17 2l6l_A DNAJ homolog subfamily 99.8 7.8E-22 2.7E-26 132.5 5.7 65 38-102 7-81 (155)
18 1faf_A Large T antigen; J doma 99.8 2.1E-21 7.1E-26 117.6 3.5 62 39-100 9-72 (79)
19 2ys8_A RAB-related GTP-binding 99.8 3.9E-21 1.3E-25 118.9 4.0 61 38-98 24-87 (90)
20 3bvo_A CO-chaperone protein HS 99.8 1.4E-20 4.7E-25 132.1 7.1 64 38-101 40-114 (207)
21 1gh6_A Large T antigen; tumor 99.8 3.5E-22 1.2E-26 128.7 -1.0 63 39-101 6-70 (114)
22 3apq_A DNAJ homolog subfamily 99.8 1.8E-20 6E-25 129.5 6.0 62 41-102 2-67 (210)
23 3hho_A CO-chaperone protein HS 99.8 1.2E-20 4.1E-25 129.2 4.7 63 40-102 3-76 (174)
24 2pf4_E Small T antigen; PP2A, 99.8 1.4E-21 4.7E-26 133.9 -0.0 64 39-102 9-74 (174)
25 1fpo_A HSC20, chaperone protei 99.8 2E-20 6.8E-25 127.8 4.6 62 42-103 2-74 (171)
26 2guz_A Mitochondrial import in 99.8 2.2E-20 7.5E-25 111.0 3.5 59 38-96 11-70 (71)
27 3lz8_A Putative chaperone DNAJ 99.8 9E-21 3.1E-25 140.7 0.0 65 38-102 25-92 (329)
28 1iur_A KIAA0730 protein; DNAJ 99.8 7.2E-20 2.5E-24 113.0 2.9 64 35-98 10-78 (88)
29 3uo3_A J-type CO-chaperone JAC 99.8 1.1E-19 3.6E-24 125.3 3.5 65 38-102 8-80 (181)
30 1n4c_A Auxilin; four helix bun 99.7 5E-19 1.7E-23 121.9 2.3 59 41-99 117-182 (182)
31 3ag7_A Putative uncharacterize 99.7 1.3E-18 4.4E-23 110.7 3.0 56 39-95 39-105 (106)
32 3apo_A DNAJ homolog subfamily 99.7 1.6E-18 5.3E-23 138.5 0.8 68 35-102 15-86 (780)
33 2qwo_B Putative tyrosine-prote 99.7 6.1E-18 2.1E-22 105.1 2.0 52 41-92 33-91 (92)
34 2guz_B Mitochondrial import in 99.3 1.2E-12 4.3E-17 76.3 4.6 52 42-93 5-59 (65)
35 2y4t_A DNAJ homolog subfamily 99.3 2.1E-12 7.3E-17 94.3 4.9 62 40-101 381-449 (450)
36 2pzi_A Probable serine/threoni 93.7 0.049 1.7E-06 42.8 3.6 47 39-89 627-675 (681)
37 2b7e_A PRE-mRNA processing pro 77.8 3.7 0.00013 22.8 3.8 48 55-102 2-55 (59)
38 1uzc_A Hypothetical protein FL 69.4 13 0.00045 21.1 4.9 50 52-101 11-64 (71)
39 2d7l_A WD repeat and HMG-box D 65.6 9.1 0.00031 22.0 3.8 41 59-99 17-57 (81)
40 4a3n_A Transcription factor SO 60.9 16 0.00055 19.7 4.2 38 59-97 14-51 (71)
41 1qqr_A Streptokinase domain B; 60.8 5.1 0.00017 25.9 2.2 32 42-73 33-64 (138)
42 1i11_A Transcription factor SO 54.6 26 0.00087 19.6 4.4 41 59-100 16-56 (81)
43 2cqn_A Formin-binding protein 54.2 21 0.00071 20.5 3.9 49 53-102 6-61 (77)
44 3f27_D Transcription factor SO 53.7 27 0.00093 19.5 4.5 38 59-97 18-55 (83)
45 1wgf_A Upstream binding factor 53.2 22 0.00074 20.5 4.0 39 59-98 32-70 (90)
46 1ckt_A High mobility group 1 p 52.7 26 0.00088 18.9 4.9 39 60-98 14-53 (71)
47 2eqz_A High mobility group pro 52.2 26 0.00088 19.9 4.2 39 59-97 27-66 (86)
48 1wz6_A HMG-box transcription f 52.1 27 0.00092 19.5 4.2 38 59-97 19-56 (82)
49 2crj_A SWI/SNF-related matrix- 51.0 33 0.0011 19.7 5.0 40 59-99 19-58 (92)
50 1hry_A Human SRY; DNA, DNA-bin 48.5 32 0.0011 18.8 4.2 38 59-97 16-53 (76)
51 3nm9_A HMG-D, high mobility gr 48.4 32 0.0011 18.8 4.5 38 59-100 15-52 (73)
52 1hme_A High mobility group pro 47.5 34 0.0012 18.8 4.9 38 59-97 18-55 (77)
53 2yrq_A High mobility group pro 47.0 36 0.0012 21.9 4.7 40 59-98 27-67 (173)
54 2e6o_A HMG box-containing prot 46.6 32 0.0011 19.6 4.0 38 59-97 29-66 (87)
55 2cs1_A PMS1 protein homolog 1; 45.9 34 0.0011 19.7 4.0 39 59-98 19-57 (92)
56 1gt0_D Transcription factor SO 43.5 29 0.001 19.2 3.4 38 59-97 14-51 (80)
57 1cf7_A Protein (transcription 43.2 45 0.0015 19.0 4.3 42 52-100 9-50 (76)
58 2lef_A LEF-1 HMG, protein (lym 42.6 38 0.0013 19.1 3.9 37 59-96 14-50 (86)
59 2co9_A Thymus high mobility gr 40.2 41 0.0014 19.7 3.9 39 59-98 29-67 (102)
60 1ug2_A 2610100B20RIK gene prod 39.2 21 0.00071 21.5 2.3 22 52-73 67-88 (95)
61 1j46_A SRY, sex-determining re 39.1 45 0.0015 18.8 3.8 37 59-96 16-52 (85)
62 1k99_A Upstream binding factor 38.6 59 0.002 19.0 5.1 40 59-99 22-61 (99)
63 2dod_A Transcription elongatio 38.0 47 0.0016 19.2 3.8 50 52-101 13-65 (82)
64 1aab_A High mobility group pro 37.3 23 0.00079 19.9 2.3 39 60-98 20-59 (83)
65 3tmm_A Transcription factor A, 35.7 58 0.002 22.3 4.5 41 59-100 53-93 (238)
66 3tq6_A Transcription factor A, 35.1 63 0.0022 21.7 4.6 41 59-100 21-61 (214)
67 3u2b_C Transcription factor SO 33.8 61 0.0021 17.7 4.1 38 59-97 14-51 (79)
68 4euw_A Transcription factor SO 33.0 70 0.0024 18.9 4.1 38 59-97 41-78 (106)
69 1r5q_A KAI A, circadian oscill 32.2 85 0.0029 18.9 4.4 19 55-73 11-29 (102)
70 2gzk_A Sex-determining region 31.9 87 0.003 19.6 4.7 38 61-99 18-55 (159)
71 2lxi_A RNA-binding protein 10; 31.6 40 0.0014 18.9 2.7 21 46-66 6-26 (91)
72 1vq8_S 50S ribosomal protein L 31.4 33 0.0011 20.1 2.3 20 46-65 26-45 (85)
73 3r8s_T 50S ribosomal protein L 29.8 36 0.0012 20.2 2.3 20 46-65 31-50 (93)
74 2lr8_A CAsp8-associated protei 34.8 12 0.00041 21.4 0.0 31 43-73 38-68 (70)
75 2zjr_Q 50S ribosomal protein L 28.6 38 0.0013 20.2 2.3 20 46-65 26-45 (95)
76 3j21_T 50S ribosomal protein L 28.2 41 0.0014 19.7 2.3 20 46-65 27-46 (86)
77 1v2z_A Circadian clock protein 28.2 1.1E+02 0.0037 18.8 4.3 20 55-74 18-37 (111)
78 3tve_T 50S ribosomal protein L 27.1 43 0.0015 19.8 2.3 20 46-65 25-44 (92)
79 1wel_A RNA-binding protein 12; 26.9 1E+02 0.0034 18.1 4.5 20 46-65 30-49 (124)
80 1r4v_A Hypothetical protein AQ 26.7 97 0.0033 20.6 4.2 32 58-89 138-169 (171)
81 1x4a_A Splicing factor, argini 26.2 96 0.0033 17.6 4.4 20 46-65 27-46 (109)
82 2ku7_A MLL1 PHD3-CYP33 RRM chi 25.5 1.1E+02 0.0037 18.0 4.4 20 46-65 68-87 (140)
83 2ket_A Cathelicidin-6; antimic 24.4 59 0.002 14.6 2.7 17 56-72 4-20 (27)
84 1iqt_A AUF1, heterogeneous nuc 24.3 69 0.0024 16.7 2.8 19 47-65 5-23 (75)
85 2xpn_B SPT6, chromatin structu 23.9 18 0.00062 16.4 0.1 10 42-51 4-13 (26)
No 1
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=5e-24 Score=133.95 Aligned_cols=69 Identities=33% Similarity=0.473 Sum_probs=63.1
Q ss_pred CCCCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhcC
Q 042724 35 DGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMCL 103 (103)
Q Consensus 35 ~~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 103 (103)
.......|||+||||+++++.++||++|+++++++|||++++ .+.|+.|++||++|+||.+|..||+.|
T Consensus 11 ~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l 83 (99)
T 2yua_A 11 DCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL 83 (99)
T ss_dssp CCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred CCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 334667899999999999999999999999999999999864 679999999999999999999999864
No 2
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.89 E-value=2.4e-23 Score=125.20 Aligned_cols=63 Identities=37% Similarity=0.578 Sum_probs=59.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
..|||+||||+++++.++||++|+++++++|||++++ .+.|+.|++||++|+||.+|..||..
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 67 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRY 67 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 4689999999999999999999999999999999853 68999999999999999999999975
No 3
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.89 E-value=2.3e-23 Score=124.15 Aligned_cols=65 Identities=32% Similarity=0.543 Sum_probs=60.5
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
....|||+||||+++++.++|+++|+++++++|||++++ .+.|+.|++||++|+||.+|..||+.
T Consensus 5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 70 (73)
T 2och_A 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQG 70 (73)
T ss_dssp -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHT
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 356799999999999999999999999999999999875 78999999999999999999999974
No 4
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=2.8e-23 Score=125.39 Aligned_cols=65 Identities=35% Similarity=0.545 Sum_probs=60.6
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
....|||+||||+++++.++||++|+++++++|||++++ .+.|+.|++||++|+||.+|..||..
T Consensus 4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 72 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAY 72 (79)
T ss_dssp SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHS
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 456799999999999999999999999999999999864 67999999999999999999999975
No 5
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.4e-23 Score=125.47 Aligned_cols=65 Identities=34% Similarity=0.504 Sum_probs=60.5
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
....|||+||||+++++.++||++|+++++++|||+++. .+.|+.|++||++|+||.+|..||..
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 71 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQF 71 (78)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHT
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHc
Confidence 356799999999999999999999999999999999854 67999999999999999999999975
No 6
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.89 E-value=1.6e-23 Score=130.14 Aligned_cols=66 Identities=27% Similarity=0.531 Sum_probs=61.0
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----------HHHHHHHHHHHHHcCChhhHHhhhhcC
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----------GRDFIEIQNSYATLSDPTARAVYDMCL 103 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----------~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 103 (103)
....|||+||||+++++.++||++|+++++++|||+++. .+.|+.|++||++|+||.+|..||..|
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 88 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR 88 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence 567899999999999999999999999999999999752 578999999999999999999999764
No 7
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=5.9e-23 Score=126.49 Aligned_cols=65 Identities=35% Similarity=0.513 Sum_probs=60.6
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
....|||+||||+++++.++||++|+++++++|||++++ ++.|+.|++||++|+||.+|..||..
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 81 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHY 81 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHc
Confidence 456799999999999999999999999999999999864 68999999999999999999999974
No 8
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=4.2e-23 Score=125.39 Aligned_cols=64 Identities=36% Similarity=0.520 Sum_probs=59.7
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
...|||+||||+++++.++||++|+++++++|||+++. .+.|+.|++||++|+||.+|..||..
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 75 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRY 75 (82)
T ss_dssp SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHT
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHc
Confidence 45799999999999999999999999999999999865 46899999999999999999999975
No 9
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=3.6e-23 Score=127.45 Aligned_cols=65 Identities=34% Similarity=0.508 Sum_probs=60.8
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
....|||+||||+++++.++||++|+++++++|||++++ .+.|+.|++||++|+||.+|..||..
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 71 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTL 71 (88)
T ss_dssp CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHT
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 456799999999999999999999999999999999875 67899999999999999999999975
No 10
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=6.4e-23 Score=131.46 Aligned_cols=65 Identities=25% Similarity=0.361 Sum_probs=61.0
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
....|||+||||+++++.++||++|+++++++|||++++ .+.|+.|++||++|+||.+|..||+.
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 85 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHW 85 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 456899999999999999999999999999999999874 78999999999999999999999974
No 11
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.88 E-value=6.5e-23 Score=127.29 Aligned_cols=64 Identities=33% Similarity=0.597 Sum_probs=60.3
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSG-NGRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-~~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
...|||+||||+++++.++||++|+++++++|||+++ +.+.|++|++||++|+||.+|..||..
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 70 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQY 70 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 5679999999999999999999999999999999984 578999999999999999999999974
No 12
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=2.2e-22 Score=128.50 Aligned_cols=65 Identities=38% Similarity=0.588 Sum_probs=60.7
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
....|+|+||||+++++.++||++|+++++++|||++++ .+.|+.|++||++|+||.+|..||..
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 82 (109)
T 2ctw_A 14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKY 82 (109)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 456799999999999999999999999999999999875 67899999999999999999999974
No 13
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.1e-22 Score=126.06 Aligned_cols=64 Identities=33% Similarity=0.530 Sum_probs=59.7
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
...|||+||||+++++.++||++|+++++++|||+++. ++.|+.|++||++|+||.+|..||..
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 75 (92)
T 2dmx_A 7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRA 75 (92)
T ss_dssp CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 45799999999999999999999999999999999864 56899999999999999999999974
No 14
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.86 E-value=2.6e-22 Score=126.31 Aligned_cols=62 Identities=32% Similarity=0.532 Sum_probs=58.3
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
.|||+||||+++++.++||++|+++++++|||++++ .+.|+.|++||++|+||.+|..||..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~ 68 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRY 68 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 589999999999999999999999999999999864 46899999999999999999999964
No 15
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.86 E-value=1.9e-22 Score=127.43 Aligned_cols=63 Identities=40% Similarity=0.598 Sum_probs=59.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
..|||+||||+++++.++||++|+++++++|||++++ ++.|++|++||++|+||.+|..||..
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 68 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQY 68 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 4689999999999999999999999999999999863 67899999999999999999999975
No 16
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.86 E-value=2.2e-22 Score=128.26 Aligned_cols=65 Identities=31% Similarity=0.415 Sum_probs=60.5
Q ss_pred CCccCcccccccCCCC-CHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 38 EDGRDLYEVLRVEPTT-TILEIKMAYQSLAKVYHLDLSGN-------GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a-~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
....|||+||||++++ +.++||++|+++++++|||++++ .+.|++|++||++|+||.+|..||..
T Consensus 12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~ 84 (109)
T 2qsa_A 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYY 84 (109)
T ss_dssp TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 4567999999999999 99999999999999999999864 57899999999999999999999975
No 17
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.85 E-value=7.8e-22 Score=132.46 Aligned_cols=65 Identities=29% Similarity=0.567 Sum_probs=59.8
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----------HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----------GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----------~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
....|||+||||+++++.++||++|+++++++|||+++. .+.|+.|++||++|+||.+|+.||..
T Consensus 7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~ 81 (155)
T 2l6l_A 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQ 81 (155)
T ss_dssp CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHH
T ss_pred CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456799999999999999999999999999999999854 37899999999999999999999964
No 18
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.83 E-value=2.1e-21 Score=117.65 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=58.2
Q ss_pred CccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhhh
Q 042724 39 DGRDLYEVLRVEPT--TTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYD 100 (103)
Q Consensus 39 ~~~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd 100 (103)
+..++|+||||+++ ++.++||++||++++++|||++++.+.|++|++||++|+|+.+|..++
T Consensus 9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~~~ 72 (79)
T 1faf_A 9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 44689999999999 999999999999999999999999999999999999999999998754
No 19
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=3.9e-21 Score=118.92 Aligned_cols=61 Identities=23% Similarity=0.347 Sum_probs=56.0
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhhHHh
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSG---NGRDFIEIQNSYATLSDPTARAV 98 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~---~~~~~~~i~~Ay~~L~d~~~R~~ 98 (103)
....|||+||||+++++.++||++|++++++||||+++ ..+.|++|++||++|+||.+|..
T Consensus 24 ~~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 24 RNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp HTCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred hcCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 45689999999999999999999999999999999984 47899999999999999998864
No 20
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=132.05 Aligned_cols=64 Identities=20% Similarity=0.446 Sum_probs=57.6
Q ss_pred CCccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 38 EDGRDLYEVLRVEPT--TTILEIKMAYQSLAKVYHLDLSGN---------GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
....|||+||||+++ ++.++||++||++++++|||++++ .+.|+.|++||++|+||.+|..||.
T Consensus 40 ~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~ 114 (207)
T 3bvo_A 40 DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL 114 (207)
T ss_dssp CTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 346799999999986 789999999999999999999853 3478999999999999999999985
No 21
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.82 E-value=3.5e-22 Score=128.65 Aligned_cols=63 Identities=19% Similarity=0.257 Sum_probs=59.7
Q ss_pred CccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 39 DGRDLYEVLRVEPTTTI--LEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 39 ~~~d~y~iLgv~~~a~~--~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
+..++|+||||+++++. ++||++||++++++|||++++.++|++|++||++|+||.+|+.||.
T Consensus 6 ~~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~~~~ 70 (114)
T 1gh6_A 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPD 70 (114)
T ss_dssp HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSC
T ss_pred hhhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHHhhh
Confidence 45689999999999998 9999999999999999999999999999999999999999999983
No 22
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.81 E-value=1.8e-20 Score=129.48 Aligned_cols=62 Identities=34% Similarity=0.538 Sum_probs=58.2
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
.|||+||||+++++.++||+|||++++++|||++++ .+.|+.|++||++|+||.+|+.||+.
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~ 67 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKY 67 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 589999999999999999999999999999999853 67899999999999999999999963
No 23
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.81 E-value=1.2e-20 Score=129.17 Aligned_cols=63 Identities=22% Similarity=0.342 Sum_probs=57.5
Q ss_pred ccCcccccccCCCCC--HHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 40 GRDLYEVLRVEPTTT--ILEIKMAYQSLAKVYHLDLSGN---------GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~--~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
..|||+||||+++++ .++|+++||++++++|||++++ .+.|..|++||++|+||.+|..||..
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 76 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS 76 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 569999999999987 9999999999999999999753 36899999999999999999999964
No 24
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.81 E-value=1.4e-21 Score=133.89 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=57.5
Q ss_pred CccCcccccccCCCCC--HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 39 DGRDLYEVLRVEPTTT--ILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 39 ~~~d~y~iLgv~~~a~--~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
+..|+|+||||+++|+ .++||+|||++++++|||++++++.|++|++||++|+||.+|+.||+.
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~YD~~ 74 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDF 74 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHTSCGG
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHHHhcc
Confidence 4579999999999998 699999999999999999999999999999999999999999999963
No 25
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.80 E-value=2e-20 Score=127.80 Aligned_cols=62 Identities=23% Similarity=0.404 Sum_probs=57.3
Q ss_pred CcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhhHHhhhhcC
Q 042724 42 DLYEVLRVEPTT--TILEIKMAYQSLAKVYHLDLSGN---------GRDFIEIQNSYATLSDPTARAVYDMCL 103 (103)
Q Consensus 42 d~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~d~~~R~~Yd~~l 103 (103)
|||+||||++++ +.++||++|++++++||||++++ .+.|..|++||++|+||.+|..||..|
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 799999999999 99999999999999999999754 258999999999999999999999653
No 26
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.2e-20 Score=110.96 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=54.7
Q ss_pred CCccCcccccccCC-CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhH
Q 042724 38 EDGRDLYEVLRVEP-TTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTAR 96 (103)
Q Consensus 38 ~~~~d~y~iLgv~~-~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R 96 (103)
+...++|+||||++ +++.++|+++||++++++|||++++.+.|++|++||++|+|+..|
T Consensus 11 m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 11 MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp CCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence 34568999999999 799999999999999999999999999999999999999998765
No 27
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.78 E-value=9e-21 Score=140.72 Aligned_cols=65 Identities=35% Similarity=0.601 Sum_probs=0.0
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 38 EDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN---GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 38 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
+...|||+||||+++|+.+|||+|||+++++||||++++ +++|++|++||++|+||.+|+.||+.
T Consensus 25 m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 92 (329)
T 3lz8_A 25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQL 92 (329)
T ss_dssp --------------------------------------------------------------------
T ss_pred ccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchh
Confidence 456799999999999999999999999999999999854 67899999999999999999999974
No 28
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.77 E-value=7.2e-20 Score=112.98 Aligned_cols=64 Identities=16% Similarity=0.061 Sum_probs=56.7
Q ss_pred CCCCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhhHHh
Q 042724 35 DGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----GRDFIEIQNSYATLSDPTARAV 98 (103)
Q Consensus 35 ~~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~d~~~R~~ 98 (103)
.......++|+||||+++++.++||++||+++++||||++++ ++.|+.|++||++|+|...|..
T Consensus 10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~ 78 (88)
T 1iur_A 10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ 78 (88)
T ss_dssp CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Confidence 334566799999999999999999999999999999999875 5789999999999999877643
No 29
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.77 E-value=1.1e-19 Score=125.25 Aligned_cols=65 Identities=22% Similarity=0.370 Sum_probs=59.0
Q ss_pred CCccCccccc------ccCC-CCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 38 EDGRDLYEVL------RVEP-TTTILEIKMAYQSLAKVYHLDLSG-NGRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 38 ~~~~d~y~iL------gv~~-~a~~~eIk~ayr~l~~~~hPD~~~-~~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
....|||+|| |+.+ +++.++||++||++++++|||+++ ..+.|..|++||++|+||.+|..||..
T Consensus 8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~ 80 (181)
T 3uo3_A 8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLK 80 (181)
T ss_dssp CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 4567999999 4655 899999999999999999999987 578999999999999999999999964
No 30
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.73 E-value=5e-19 Score=121.87 Aligned_cols=59 Identities=15% Similarity=0.313 Sum_probs=55.3
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhhHHhh
Q 042724 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-------GRDFIEIQNSYATLSDPTARAVY 99 (103)
Q Consensus 41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~d~~~R~~Y 99 (103)
.|+|+||||++.++.++||++||++++++|||++++ ++.|+.|++||++|+||.+|+.|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 699999999999999999999999999999999743 45899999999999999999887
No 31
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.72 E-value=1.3e-18 Score=110.65 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=50.1
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----------HHHHHHHHHHHHHcCChhh
Q 042724 39 DGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-----------GRDFIEIQNSYATLSDPTA 95 (103)
Q Consensus 39 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----------~~~~~~i~~Ay~~L~d~~~ 95 (103)
...|||+|||++. |+.++||+|||++++++|||++++ ++.|+.|++||++|+|+..
T Consensus 39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~~ 105 (106)
T 3ag7_A 39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLGP 105 (106)
T ss_dssp TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCccc
Confidence 3479999999996 999999999999999999999642 5689999999999999863
No 32
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.70 E-value=1.6e-18 Score=138.53 Aligned_cols=68 Identities=31% Similarity=0.475 Sum_probs=40.0
Q ss_pred CCCCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhhHHhhhhc
Q 042724 35 DGAEDGRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN----GRDFIEIQNSYATLSDPTARAVYDMC 102 (103)
Q Consensus 35 ~~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d~~~R~~Yd~~ 102 (103)
.......|||+||||+++|+.++||+|||++++++|||++++ .+.|++|++||++|+||.+|+.||+.
T Consensus 15 ~~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~ 86 (780)
T 3apo_A 15 IEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKY 86 (780)
T ss_dssp --------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC
T ss_pred CCCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhh
Confidence 344567899999999999999999999999999999999853 66899999999999999999999974
No 33
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.68 E-value=6.1e-18 Score=105.09 Aligned_cols=52 Identities=13% Similarity=0.233 Sum_probs=47.6
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCC
Q 042724 41 RDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-------GRDFIEIQNSYATLSD 92 (103)
Q Consensus 41 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~d 92 (103)
.++|++|||++.++.++||+|||+++++||||++++ ++.|+.|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999753 4589999999999964
No 34
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.33 E-value=1.2e-12 Score=76.26 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=48.5
Q ss_pred CcccccccCCC---CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCCh
Q 042724 42 DLYEVLRVEPT---TTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDP 93 (103)
Q Consensus 42 d~y~iLgv~~~---a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~ 93 (103)
+-|.||||+++ ++.++|+++||+|....|||++++......|++|++.|...
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 56899999999 99999999999999999999999999999999999998643
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.29 E-value=2.1e-12 Score=94.25 Aligned_cols=62 Identities=37% Similarity=0.530 Sum_probs=52.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhhHHhhhh
Q 042724 40 GRDLYEVLRVEPTTTILEIKMAYQSLAKVYHLDLSGN-------GRDFIEIQNSYATLSDPTARAVYDM 101 (103)
Q Consensus 40 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~d~~~R~~Yd~ 101 (103)
..++|.+||+.+.++.++|+++|+++++++|||+.+. ++.|+.|.+||++|+||++|..||+
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 3489999999999999999999999999999999864 4589999999999999999999996
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.71 E-value=0.049 Score=42.79 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=37.0
Q ss_pred CccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH
Q 042724 39 DGRDLYEVLRVEPTTTI--LEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYAT 89 (103)
Q Consensus 39 ~~~d~y~iLgv~~~a~~--~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~ 89 (103)
...|+|.+||++..... .+|+++||++++..+++ .+++..|..|+.|
T Consensus 627 ~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----~~r~~lvd~a~~v 675 (681)
T 2pzi_A 627 NKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----RHRYTLVDMANKV 675 (681)
T ss_dssp CCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----HHHHHHHHHHHHH
T ss_pred cCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----HHHHHHHHHhccc
Confidence 34459999999766544 67999999999966654 4788889988876
No 37
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=77.76 E-value=3.7 Score=22.76 Aligned_cols=48 Identities=17% Similarity=0.336 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCcc-HHHHHHH---HHHHHHcCC-hh-hHHhhhhc
Q 042724 55 ILEIKMAYQSLAKVYHLDLSGN-GRDFIEI---QNSYATLSD-PT-ARAVYDMC 102 (103)
Q Consensus 55 ~~eIk~ayr~l~~~~hPD~~~~-~~~~~~i---~~Ay~~L~d-~~-~R~~Yd~~ 102 (103)
.+|..++|.+|.+...=|-.-+ +..++.| ..-|.+|.| |. +++.|+..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y 55 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKY 55 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHH
Confidence 3578899999999875554434 6667777 458999997 65 66667653
No 38
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=69.37 E-value=13 Score=21.05 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHH--HHHHcCCh-hhHHhhhh
Q 042724 52 TTTILEIKMAYQSLAKVYHLDLSGN-GRDFIEIQN--SYATLSDP-TARAVYDM 101 (103)
Q Consensus 52 ~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~i~~--Ay~~L~d~-~~R~~Yd~ 101 (103)
.++.++.+.+|++|....+-+-... +.....|.. -|.+|.++ ++++.|+.
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~e 64 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNA 64 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccccccCCHHHHHHHHHH
Confidence 4689999999999999986555444 334444433 67777775 44445543
No 39
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.62 E-value=9.1 Score=22.03 Aligned_cols=41 Identities=15% Similarity=-0.036 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhh
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVY 99 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Y 99 (103)
-..+|...+.-||+.....+..+.|.+.|..|++.++....
T Consensus 17 ~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~ 57 (81)
T 2d7l_A 17 LEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWA 57 (81)
T ss_dssp HHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45567788888999863578899999999999966655443
No 40
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=60.88 E-value=16 Score=19.70 Aligned_cols=38 Identities=16% Similarity=0.058 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHH
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARA 97 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~ 97 (103)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++..
T Consensus 14 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~ 51 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRP 51 (71)
T ss_dssp HHHHHHHHHTTCTTSC-HHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Confidence 4566777788888865 4678889999999999655443
No 41
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=60.80 E-value=5.1 Score=25.87 Aligned_cols=32 Identities=25% Similarity=0.220 Sum_probs=28.5
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCC
Q 042724 42 DLYEVLRVEPTTTILEIKMAYQSLAKVYHLDL 73 (103)
Q Consensus 42 d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~ 73 (103)
-++..|.|....+.+|++++=..+..++||+=
T Consensus 33 ~~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 44788888889999999999999999999984
No 42
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=54.58 E-value=26 Score=19.59 Aligned_cols=41 Identities=7% Similarity=0.063 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhhh
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYD 100 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd 100 (103)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++...++
T Consensus 16 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~ 56 (81)
T 1i11_A 16 AKDERRKILQAFPDMH-NSNISKILGSRWKAMTNLEKQPYYE 56 (81)
T ss_dssp HHHHHHHHHTTCSSCC-HHHHHHHHHHHHTTSCSGGGHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHhhhhhCCHHHHHHHHH
Confidence 3456667777788764 4678899999999999776655443
No 43
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=54.21 E-value=21 Score=20.46 Aligned_cols=49 Identities=8% Similarity=0.192 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCcc------HHHHHHHHHHHHHcCCh-hhHHhhhhc
Q 042724 53 TTILEIKMAYQSLAKVYHLDLSGN------GRDFIEIQNSYATLSDP-TARAVYDMC 102 (103)
Q Consensus 53 a~~~eIk~ayr~l~~~~hPD~~~~------~~~~~~i~~Ay~~L~d~-~~R~~Yd~~ 102 (103)
.-...++..|+.+.+...|..... ...|.... +|..+.++ +++.+|+..
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFeeY 61 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKDF 61 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHHH
Confidence 345678999999999887766543 22333333 79988775 555666543
No 44
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=53.70 E-value=27 Score=19.49 Aligned_cols=38 Identities=16% Similarity=0.058 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHH
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARA 97 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~ 97 (103)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++..
T Consensus 18 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~ 55 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRP 55 (83)
T ss_dssp HHHHHHHHHHHCSSSC-HHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Confidence 4566777888899865 4678899999999999655443
No 45
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=53.20 E-value=22 Score=20.50 Aligned_cols=39 Identities=8% Similarity=-0.012 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHh
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAV 98 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~ 98 (103)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++...
T Consensus 32 ~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y 70 (90)
T 1wgf_A 32 SEEKRRQLQEERPEL-SESELTRLLARMWNDLSEKKKAKY 70 (90)
T ss_dssp HHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 345566777788984 356788999999999996655443
No 46
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=52.70 E-value=26 Score=18.91 Aligned_cols=39 Identities=15% Similarity=0.007 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHcCChhhHHh
Q 042724 60 MAYQSLAKVYHLDLSG-NGRDFIEIQNSYATLSDPTARAV 98 (103)
Q Consensus 60 ~ayr~l~~~~hPD~~~-~~~~~~~i~~Ay~~L~d~~~R~~ 98 (103)
+..|...+.-||+... -.+..+.|.+.|..|++.++...
T Consensus 14 ~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y 53 (71)
T 1ckt_A 14 QTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 53 (71)
T ss_dssp HHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHH
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHH
Confidence 3455566777998753 37889999999999997765443
No 47
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.16 E-value=26 Score=19.89 Aligned_cols=39 Identities=8% Similarity=-0.045 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHcCChhhHH
Q 042724 59 KMAYQSLAKVYHLDLSG-NGRDFIEIQNSYATLSDPTARA 97 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~-~~~~~~~i~~Ay~~L~d~~~R~ 97 (103)
-+..|..++.-||+... ..+..+.|.+.|..|++.++..
T Consensus 27 ~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~ 66 (86)
T 2eqz_A 27 VQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSK 66 (86)
T ss_dssp HHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHH
Confidence 34556667778999764 4788999999999999665443
No 48
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=52.13 E-value=27 Score=19.53 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHH
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARA 97 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~ 97 (103)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++..
T Consensus 19 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~ 56 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLD-NRGATKILADWWAVLDPKEKQK 56 (82)
T ss_dssp HHHHHHHHHHHCSSSC-TTHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhhCCHHHHHH
Confidence 4566777777889853 4678889999999999655443
No 49
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=51.05 E-value=33 Score=19.70 Aligned_cols=40 Identities=10% Similarity=0.024 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhh
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVY 99 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Y 99 (103)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....
T Consensus 19 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~Y~ 58 (92)
T 2crj_A 19 LNERREQIRTRHPDLP-FPEITKMLGAEWSKLQPAEKQRYL 58 (92)
T ss_dssp HHHHHHHHHHHCTTCC-HHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3556667777889854 567889999999999977655433
No 50
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=48.51 E-value=32 Score=18.81 Aligned_cols=38 Identities=5% Similarity=0.027 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHH
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARA 97 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~ 97 (103)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++..
T Consensus 16 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~ 53 (76)
T 1hry_A 16 SRDQRRKMALENPRMR-NSEISKQLGYQWKMLTEAEKWP 53 (76)
T ss_dssp HHHHHHHHHHHCSCCS-SSHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHCcCCC-HHHHHHHHHhHHHhCCHHHHHH
Confidence 3556667777899864 4577899999999998555443
No 51
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=48.36 E-value=32 Score=18.76 Aligned_cols=38 Identities=5% Similarity=-0.018 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhhh
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYD 100 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd 100 (103)
.+.+|..++.-||+.. ..+..+.|.+.|..|++ |..|.
T Consensus 15 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~---K~~y~ 52 (73)
T 3nm9_A 15 LNSARESIKRENPGIK-VTEVAKRGGELWRAMKD---KSEWE 52 (73)
T ss_dssp HHHHHHHHHHHSSSCC-HHHHHHHHHHHHHHCSC---CHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCc---hHHHH
Confidence 4556677778899874 46788899999999987 55554
No 52
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=47.47 E-value=34 Score=18.76 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHH
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARA 97 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~ 97 (103)
.+..+..++.-||+.. ..+..+.|.+.|..|++.++..
T Consensus 18 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~ 55 (77)
T 1hme_A 18 CSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQP 55 (77)
T ss_dssp HHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHSCGGGSHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 3455666677789853 4678899999999999765543
No 53
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.96 E-value=36 Score=21.87 Aligned_cols=40 Identities=13% Similarity=-0.003 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCC-CccHHHHHHHHHHHHHcCChhhHHh
Q 042724 59 KMAYQSLAKVYHLDL-SGNGRDFIEIQNSYATLSDPTARAV 98 (103)
Q Consensus 59 k~ayr~l~~~~hPD~-~~~~~~~~~i~~Ay~~L~d~~~R~~ 98 (103)
-+..+..++.-||+. ....+..+.|.+.|..|++.++...
T Consensus 27 ~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y 67 (173)
T 2yrq_A 27 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 67 (173)
T ss_dssp HHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 455667777889996 3557889999999999997665443
No 54
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=46.65 E-value=32 Score=19.56 Aligned_cols=38 Identities=8% Similarity=0.043 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHH
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARA 97 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~ 97 (103)
.+.++..++.-||+. ...+..+.|.+.|..|++.++..
T Consensus 29 ~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~ 66 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGK-DNRAISVILGDRWKKMKNEERRM 66 (87)
T ss_dssp HHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHH
Confidence 455666777788985 34678889999999999655443
No 55
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.89 E-value=34 Score=19.69 Aligned_cols=39 Identities=13% Similarity=0.038 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHh
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAV 98 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~ 98 (103)
.+..|..++.-||+.. ..+..+.|.+.|..|++.++...
T Consensus 19 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y 57 (92)
T 2cs1_A 19 VQDHRPQFLIENPKTS-LEDATLQIEELWKTLSEEEKLKY 57 (92)
T ss_dssp HHHHHHHHHHHCCSSC-HHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Confidence 3456667777899864 46788999999999996655443
No 56
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=43.55 E-value=29 Score=19.24 Aligned_cols=38 Identities=11% Similarity=0.064 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHH
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARA 97 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~ 97 (103)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++..
T Consensus 14 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~ 51 (80)
T 1gt0_D 14 SRGQRRKMAQENPKMH-NSEISKRLGAEWKLLSETEKRP 51 (80)
T ss_dssp HHHHHHHHHTTSTTSC-HHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 3455666677788753 4678889999999999655443
No 57
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=43.18 E-value=45 Score=18.96 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhhh
Q 042724 52 TTTILEIKMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYD 100 (103)
Q Consensus 52 ~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd 100 (103)
+.+...+.+.|-++... +|+..- .|++|-+.|.-..+|+.||
T Consensus 9 ~~SL~~lt~kFi~l~~~-~~~~~i------~l~~aa~~L~v~~kRRiYD 50 (76)
T 1cf7_A 9 EKSLGLLTTKFVSLLQE-AKDGVL------DLKLAADTLAVRQKRRIYD 50 (76)
T ss_dssp TTCHHHHHHHHHHHHHH-SSTTEE------EHHHHHHHTTTCCTHHHHH
T ss_pred cCcHHHHHHHHHHHHHh-CCCCcC------cHHHHHHHhCCccceehhh
Confidence 45777788888888765 344321 2777778887447999998
No 58
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=42.56 E-value=38 Score=19.10 Aligned_cols=37 Identities=5% Similarity=-0.145 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhH
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTAR 96 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R 96 (103)
.+.++..++.-||+. ...+..+.|.+.|..|++.++.
T Consensus 14 ~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~ 50 (86)
T 2lef_A 14 MKEMRANVVAESTLK-ESAAINQILGRRWHALSREEQA 50 (86)
T ss_dssp HHHHHHHHHHHSSCC-CHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHH
Confidence 345666677778986 3467889999999999965543
No 59
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=40.20 E-value=41 Score=19.75 Aligned_cols=39 Identities=10% Similarity=-0.003 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHh
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAV 98 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~ 98 (103)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++...
T Consensus 29 ~~~~r~~i~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y 67 (102)
T 2co9_A 29 FRDTQAAIKGQNPNAT-FGEVSKIVASMWDGLGEEQKQVY 67 (102)
T ss_dssp HHHHHHHHHHHCTTSC-HHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHccCCHHHHHHH
Confidence 3455666677789863 46788899999999996655443
No 60
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=39.25 E-value=21 Score=21.51 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC
Q 042724 52 TTTILEIKMAYQSLAKVYHLDL 73 (103)
Q Consensus 52 ~a~~~eIk~ayr~l~~~~hPD~ 73 (103)
+-+.++|+.+|++|++.+|--.
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999887543
No 61
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=39.13 E-value=45 Score=18.76 Aligned_cols=37 Identities=5% Similarity=0.025 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhH
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTAR 96 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R 96 (103)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++.
T Consensus 16 ~~~~r~~~~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~ 52 (85)
T 1j46_A 16 SRDQRRKMALENPRMR-NSEISKQLGYQWKMLTEAEKW 52 (85)
T ss_dssp HHHHHHHHHHHSTTSC-HHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCHHHHH
Confidence 3456666777789763 467788999999999865543
No 62
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=38.62 E-value=59 Score=18.99 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhh
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVY 99 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Y 99 (103)
.+..+..++.-+|+.. ..+..+.|.+.|..|++.++....
T Consensus 22 ~~~~r~~ik~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~ 61 (99)
T 1k99_A 22 FMEKRAKYAKLHPEMS-NLDLTKILSKKYKELPEKKKMKYI 61 (99)
T ss_dssp HHHHHHHHHTTCTTSC-SHHHHHHHHHHHHHSCSTTHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3455666677788853 578889999999999977665443
No 63
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=37.99 E-value=47 Score=19.19 Aligned_cols=50 Identities=10% Similarity=0.152 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHH--HHHHcCChhhHHhhhh
Q 042724 52 TTTILEIKMAYQSLAKVYHLDLSGN-GRDFIEIQN--SYATLSDPTARAVYDM 101 (103)
Q Consensus 52 ~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~i~~--Ay~~L~d~~~R~~Yd~ 101 (103)
..+.++-+.+|++|...++-+-... +.....|.. -|.+|...++|..|+.
T Consensus 13 ~~t~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~DpRY~aL~~~eRK~~F~~ 65 (82)
T 2dod_A 13 IVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQ 65 (82)
T ss_dssp SCCHHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSGGGTSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCCccccCCHHHHHHHHHH
Confidence 3588999999999999987665544 344444433 4566654455555654
No 64
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=37.32 E-value=23 Score=19.89 Aligned_cols=39 Identities=15% Similarity=0.026 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCC-ccHHHHHHHHHHHHHcCChhhHHh
Q 042724 60 MAYQSLAKVYHLDLS-GNGRDFIEIQNSYATLSDPTARAV 98 (103)
Q Consensus 60 ~ayr~l~~~~hPD~~-~~~~~~~~i~~Ay~~L~d~~~R~~ 98 (103)
+..|..++.-||+.. ...+..+.|.+.|..|++.++...
T Consensus 20 ~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y 59 (83)
T 1aab_A 20 QTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 59 (83)
T ss_dssp HHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHH
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHH
Confidence 455666677789875 346778899999999997665443
No 65
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=35.74 E-value=58 Score=22.28 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhhh
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYD 100 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd 100 (103)
-+..|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 53 ~~e~r~~~k~~~P~~~-~~eisk~lge~Wk~Ls~~EK~~y~~ 93 (238)
T 3tmm_A 53 SKEQLPIFKAQNPDAK-TTELIRRIAQRWRELPDSKKKIYQD 93 (238)
T ss_dssp HHHHHHHHHHHSTTSC-HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4555666777899876 5778889999999999776654443
No 66
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=35.07 E-value=63 Score=21.70 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhhh
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVYD 100 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Yd 100 (103)
-+..+...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 21 ~~~~r~~~k~~~P~~~-~~eisk~lge~Wk~Ls~~EK~~y~~ 61 (214)
T 3tq6_A 21 SKEQLPIFKAQNPDAK-TTELIRRIAQRWRELPDSKKKIYQD 61 (214)
T ss_dssp HHHHHHHHHHHCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC-HHHHHHHHHHHHHccCHHhhhHHHH
Confidence 3455666777899875 5778889999999999766554433
No 67
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=33.77 E-value=61 Score=17.71 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHH
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARA 97 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~ 97 (103)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++..
T Consensus 14 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~ 51 (79)
T 3u2b_C 14 SQIERRKIMEQSPDMH-NAEISKRLGKRWKLLKDSDKIP 51 (79)
T ss_dssp HHHHHHHHHTTSTTSC-HHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHCcCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 4556667777788764 4678889999999998555433
No 68
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=32.99 E-value=70 Score=18.90 Aligned_cols=38 Identities=13% Similarity=0.023 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHH
Q 042724 59 KMAYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARA 97 (103)
Q Consensus 59 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~ 97 (103)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++..
T Consensus 41 ~~~~r~~~k~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~ 78 (106)
T 4euw_A 41 AQAARRKLADQYPHLH-NAELSKTLGKLWRLLNESEKRP 78 (106)
T ss_dssp HHHHHHHHHHHCTTSC-HHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHH
Confidence 5667777888899864 4678899999999999655443
No 69
>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene regulation; 2.00A {Nostoc SP} SCOP: a.186.1.1
Probab=32.20 E-value=85 Score=18.95 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhCCCC
Q 042724 55 ILEIKMAYQSLAKVYHLDL 73 (103)
Q Consensus 55 ~~eIk~ayr~l~~~~hPD~ 73 (103)
.++++..||.+.+.|-.+-
T Consensus 11 l~~L~~~YR~ill~YF~~d 29 (102)
T 1r5q_A 11 LQQLKSDYRQILLSYFTTD 29 (102)
T ss_dssp HHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHhCCc
Confidence 4678999999999996544
No 70
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=31.91 E-value=87 Score=19.58 Aligned_cols=38 Identities=5% Similarity=0.080 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhhHHhh
Q 042724 61 AYQSLAKVYHLDLSGNGRDFIEIQNSYATLSDPTARAVY 99 (103)
Q Consensus 61 ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d~~~R~~Y 99 (103)
..+..++.-||+. ...+..+.|.+.|..|++.++....
T Consensus 18 ~~~~ki~~~~P~~-~~~eisk~lg~~Wk~ls~~eK~~y~ 55 (159)
T 2gzk_A 18 DQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFF 55 (159)
T ss_dssp HHHHHHHHHCSSC-CHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHCCCC-CHHHHHHHHHHHHHHhhHHHhccHH
Confidence 3444555779984 3577889999999999976654433
No 71
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=31.60 E-value=40 Score=18.93 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=18.0
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 042724 46 VLRVEPTTTILEIKMAYQSLA 66 (103)
Q Consensus 46 iLgv~~~a~~~eIk~ayr~l~ 66 (103)
|=||+++++.++|+..|.+.-
T Consensus 6 v~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 6 LRMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp EETCCSSCCHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHHhC
Confidence 348999999999999998864
No 72
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=31.40 E-value=33 Score=20.06 Aligned_cols=20 Identities=15% Similarity=0.096 Sum_probs=17.8
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 042724 46 VLRVEPTTTILEIKMAYQSL 65 (103)
Q Consensus 46 iLgv~~~a~~~eIk~ayr~l 65 (103)
+|-|++.|+..|||+|..++
T Consensus 26 ~F~V~~~AnK~qIK~ave~l 45 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQ 45 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 67899999999999998775
No 73
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=29.80 E-value=36 Score=20.23 Aligned_cols=20 Identities=50% Similarity=0.516 Sum_probs=17.4
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 042724 46 VLRVEPTTTILEIKMAYQSL 65 (103)
Q Consensus 46 iLgv~~~a~~~eIk~ayr~l 65 (103)
+|-|++.|+.-|||+|..++
T Consensus 31 ~F~V~~~AnK~eIK~AVE~l 50 (93)
T 3r8s_T 31 VLKVAKDATKAEIKAAVQKL 50 (93)
T ss_dssp EEEECSSCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 47899999999999998775
No 74
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=34.81 E-value=12 Score=21.36 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=22.3
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHHhCCCC
Q 042724 43 LYEVLRVEPTTTILEIKMAYQSLAKVYHLDL 73 (103)
Q Consensus 43 ~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~ 73 (103)
-|..|.-.-+-++++|+.+|++|+..+|-.+
T Consensus 38 tfa~iA~~Lnks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 38 TFAYLAAKLDKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 3444443335688999999999999887654
No 75
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=28.61 E-value=38 Score=20.20 Aligned_cols=20 Identities=40% Similarity=0.361 Sum_probs=18.1
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 042724 46 VLRVEPTTTILEIKMAYQSL 65 (103)
Q Consensus 46 iLgv~~~a~~~eIk~ayr~l 65 (103)
+|-|++.|+..|||+|..++
T Consensus 26 ~F~V~~~anK~eIK~aVE~l 45 (95)
T 2zjr_Q 26 SFWVSPKATKTEIKDAIQQA 45 (95)
T ss_dssp EEEECSSCTHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHH
Confidence 78899999999999998776
No 76
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.21 E-value=41 Score=19.73 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.5
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 042724 46 VLRVEPTTTILEIKMAYQSL 65 (103)
Q Consensus 46 iLgv~~~a~~~eIk~ayr~l 65 (103)
+|-|++.|+..|||+|..++
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~l 46 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEI 46 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHH
Confidence 47899999999999998876
No 77
>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural genomics/proteomics initiative, structural genomics; 1.80A {Thermosynechococcus elongatus} SCOP: a.186.1.1 PDB: 1q6a_A 1q6b_A 1suy_A 1sv1_A
Probab=28.16 E-value=1.1e+02 Score=18.81 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhCCCCC
Q 042724 55 ILEIKMAYQSLAKVYHLDLS 74 (103)
Q Consensus 55 ~~eIk~ayr~l~~~~hPD~~ 74 (103)
.++++..||.+.+.|-.+-.
T Consensus 18 l~~L~~~YR~ill~YF~~d~ 37 (111)
T 1v2z_A 18 LDELRSIYRTIVLEYFNTDA 37 (111)
T ss_dssp HHHHHHHHHHHHHHTTCTTS
T ss_pred HHHHHHHHHHHHHHHhCCch
Confidence 46799999999999965543
No 78
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=27.06 E-value=43 Score=19.83 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=17.6
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 042724 46 VLRVEPTTTILEIKMAYQSL 65 (103)
Q Consensus 46 iLgv~~~a~~~eIk~ayr~l 65 (103)
+|-|++.|+.-|||+|..++
T Consensus 25 ~F~V~~~AnK~qIK~aVe~l 44 (92)
T 3tve_T 25 TFWVHPKATKTEIKNAVETA 44 (92)
T ss_dssp EEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 47899999999999998775
No 79
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.95 E-value=1e+02 Score=18.11 Aligned_cols=20 Identities=5% Similarity=-0.022 Sum_probs=16.5
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 042724 46 VLRVEPTTTILEIKMAYQSL 65 (103)
Q Consensus 46 iLgv~~~a~~~eIk~ayr~l 65 (103)
|=||+.+++.++|+..|.+.
T Consensus 30 V~nLp~~~te~~l~~~F~~~ 49 (124)
T 1wel_A 30 LKGLPFEAENKHVIDFFKKL 49 (124)
T ss_dssp EECCCTTCCHHHHHHHSCSS
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 55899999999999888653
No 80
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=26.73 E-value=97 Score=20.56 Aligned_cols=32 Identities=3% Similarity=-0.091 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH
Q 042724 58 IKMAYQSLAKVYHLDLSGNGRDFIEIQNSYAT 89 (103)
Q Consensus 58 Ik~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~ 89 (103)
|--++-+..+..||++++..+.+.+..+.++.
T Consensus 138 L~valARv~K~l~Pernp~~ehwE~a~~v~Dl 169 (171)
T 1r4v_A 138 LLLMHADVIKKATGERKPSREAMEFVAQIVDK 169 (171)
T ss_dssp HHHHHHHHHHHHCCCSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Confidence 44566778889999988888877776665554
No 81
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.15 E-value=96 Score=17.60 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=17.4
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 042724 46 VLRVEPTTTILEIKMAYQSL 65 (103)
Q Consensus 46 iLgv~~~a~~~eIk~ayr~l 65 (103)
|=+|+.+++.++|+..|.+.
T Consensus 27 V~nLp~~~t~~~l~~~F~~~ 46 (109)
T 1x4a_A 27 VGNLPPDIRTKDIEDVFYKY 46 (109)
T ss_dssp EESCCTTCCHHHHHHHHGGG
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 55899999999999998775
No 82
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=25.48 E-value=1.1e+02 Score=18.03 Aligned_cols=20 Identities=10% Similarity=0.037 Sum_probs=17.4
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 042724 46 VLRVEPTTTILEIKMAYQSL 65 (103)
Q Consensus 46 iLgv~~~a~~~eIk~ayr~l 65 (103)
|=||+.+.+.++|+..|.+.
T Consensus 68 v~nlp~~~~~~~l~~~f~~~ 87 (140)
T 2ku7_A 68 VGGLAEEVDDKVLHAAFIPF 87 (140)
T ss_dssp EECCCTTCCHHHHHHHHGGG
T ss_pred EEeCCCCCCHHHHHHHHHhc
Confidence 56899999999999999775
No 83
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=24.45 E-value=59 Score=14.55 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhCCC
Q 042724 56 LEIKMAYQSLAKVYHLD 72 (103)
Q Consensus 56 ~eIk~ayr~l~~~~hPD 72 (103)
+..++.|+++-++..|-
T Consensus 4 krfrkkfkklfkklspv 20 (27)
T 2ket_A 4 KRFRKKFKKLFKKLSPV 20 (27)
T ss_dssp HHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 45678888888888774
No 84
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=24.27 E-value=69 Score=16.68 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=16.6
Q ss_pred cccCCCCCHHHHHHHHHHH
Q 042724 47 LRVEPTTTILEIKMAYQSL 65 (103)
Q Consensus 47 Lgv~~~a~~~eIk~ayr~l 65 (103)
=||+.+.+.++|+..|.+.
T Consensus 5 ~nLp~~~t~~~l~~~F~~~ 23 (75)
T 1iqt_A 5 GGLSPDTPEEKIREYFGGF 23 (75)
T ss_dssp SCCCSSCCHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHhc
Confidence 4788999999999999886
No 85
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=23.87 E-value=18 Score=16.36 Aligned_cols=10 Identities=10% Similarity=0.351 Sum_probs=7.6
Q ss_pred CcccccccCC
Q 042724 42 DLYEVLRVEP 51 (103)
Q Consensus 42 d~y~iLgv~~ 51 (103)
-||+|+|+..
T Consensus 4 lFyEIFGtG~ 13 (26)
T 2xpn_B 4 MFFEIFGTGE 13 (26)
T ss_pred EEEEEecCCc
Confidence 3799999764
Done!