BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042725
(441 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 73/361 (20%), Positives = 139/361 (38%), Gaps = 56/361 (15%)
Query: 88 LPIGTPPQTQEMVLDTGSQLSWI-----KCHKKAPAXXXXXXXXXXXXXXXVLPCTHPLC 142
+ +G+ Q Q +V+DTGS W+ +C T+ C
Sbjct: 18 IVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQ------------------TNNFC 59
Query: 143 KPRIVDFTLPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTS 202
K + QN +S Y D T ++G+ K+ F S TS
Sbjct: 60 KQEGTFDPSSSSSAQNLNQDFSIEYGDLTSSQGSFYKDTVGFGGI-SIKNQQFADVTTTS 118
Query: 203 EDKGILGMNLGRLSFASQAKISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFL 262
D+GI+G+ A +A + + VP + + G ++ L N A + F
Sbjct: 119 VDQGIMGIGFT----ADEAGYNLYD-NVPVTLKKQGIINKNAYSLYLNSEDASTGKIIFG 173
Query: 263 TFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVD 322
++ + L L + ++ +R+ ++ T+ +A ++DSG+ TY
Sbjct: 174 GVDNAKYTGTLTALPVTSSVE-LRVHLGSINFDGTSVSTNA----DVVLDSGTTITYFS- 227
Query: 323 VAYNKIKEEIVRLAGPRMK-KGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERGVEILIE 381
++ R+ G + +Y + L GD VF F++GV+I +
Sbjct: 228 ---QSTADKFARIVGATWDSRNEIY-----------RLPSCDLSGDAVFNFDQGVKITVP 273
Query: 382 -KERVLADVGGGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAKAECSRS 440
E +L D + GI R++ +NI G+ + ++ +DL + + A+ + + S
Sbjct: 274 LSELILKDSDSSICYFGISRND-----ANILGDNFLRRAYIVYDLDDKTISLAQVKYTSS 328
Query: 441 A 441
+
Sbjct: 329 S 329
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 117/288 (40%), Gaps = 33/288 (11%)
Query: 168 ADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTSEDKGILGM-NLGRLSFASQAKI-SK 225
DG+ + + +F FS A ++L L G++GM LGR A ++ S
Sbjct: 120 TDGSSSGRVVTVPRFIFSCAPTSLLQNLA--------SGVVGMAGLGRTRIALPSQFASA 171
Query: 226 FSYCVPTRVSRVGYTPTGSFYL-GENP---------NSAGFRYVSFLTFP--QSQRSPNL 273
FS+ + G T + S + G +P + Y LT P S S
Sbjct: 172 FSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQG 231
Query: 274 DP-LAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEI 332
+P + Y + ++ ++I K + + + ++G G T + + + +T L Y + E
Sbjct: 232 EPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAF 291
Query: 333 VRLAGPRMKKGYVYGGVADMCFDGNAMEVGRL-----IGDMVFEFERGVEILIEKERVLA 387
++ + R CF + + RL D+V + E V I +
Sbjct: 292 IKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSES-VVWTITGSNSMV 350
Query: 388 DVGGGVHCVGI--GRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFA 433
+ V C+G+ G S + S + G ++ V+FDLA+ RVGF+
Sbjct: 351 YINDNVVCLGVVDGGSNLR--TSIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 118/290 (40%), Gaps = 39/290 (13%)
Query: 169 DGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTSEDKGILGM-NLGRLSFASQAKI-SKF 226
DG+ + + +F FS A ++L L G++GM LGR A ++ S F
Sbjct: 121 DGSSSGRVVTVPRFIFSCAPTSLLQNLA--------SGVVGMAGLGRTRIALPSQFASAF 172
Query: 227 SYCVPTRVSRVGYTPTGSFYL-GENP---------NSAGFRYVSFLTFPQS------QRS 270
S+ + G T + S + G +P + Y LT P S Q
Sbjct: 173 SFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGE 232
Query: 271 PNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKE 330
P+++ Y + ++ ++I K + + + ++G G T + + + +T L Y + E
Sbjct: 233 PSVE---YFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTE 289
Query: 331 EIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRL-----IGDMVFEFERGVEILIEKERV 385
++ + R CF + + RL D+V + E V I
Sbjct: 290 AFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSES-VVWTITGSNS 348
Query: 386 LADVGGGVHCVGI--GRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFA 433
+ + V C+G+ G S + S + G ++ V+FDLA+ RVGF+
Sbjct: 349 MVYINDNVVCLGVVDGGSNLR--TSIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 69/386 (17%), Positives = 129/386 (33%), Gaps = 88/386 (22%)
Query: 98 EMVLDTGSQLSWIKCHKKAPAXXXXXXXXXXXXXXXVLPCTHPLC-------KPRIVDFT 150
+VLD L W C P +PC+ P C P +
Sbjct: 25 SLVLDVAGPLVWSTCDGGQPPAE--------------IPCSSPTCLLANAYPAPGCPAPS 70
Query: 151 LPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPL-------ILGCAKD--- 200
+D Y Y G A G+L +F + + P+ + CA
Sbjct: 71 CGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLL 130
Query: 201 ---TSEDKGILGMNLGRLSFASQAK-----ISKFSYCVPTRVSRVGYTPTGSFYLGENPN 252
G+ G+ L+ +Q ++F C+PT V G P
Sbjct: 131 ASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAI-------FGGGP- 182
Query: 253 SAGFRYVSFLTFPQSQRSPNLDPL-------AYSVPMQGVRIQGKRLDIPATAFHPDASG 305
+ +PQ +S PL A+ + + + + R+ +P A
Sbjct: 183 ---------VPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGAL-----A 228
Query: 306 SGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVAD------MCFD---- 355
+G ++ + + L Y + + + + G + +C+D
Sbjct: 229 TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTL 288
Query: 356 GNAMEVGRLIGDMVFEFERGVEILIEKERVLADVGGGVHCVGIGRSEMLGLASN------ 409
GN + G + ++ + G + + + + DV G CV EM G+A+
Sbjct: 289 GNNLG-GYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAF--VEMKGVAAGDGRAPA 345
Query: 410 -IFGNFHQQNLWVEFDLASRRVGFAK 434
I G ++ ++FD+ +R+GF++
Sbjct: 346 VILGGAQMEDFVLDFDMEKKRLGFSR 371
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 7/135 (5%)
Query: 303 ASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVA--DMCFDGNAME 360
S SG T++ + + L Y + + ++ K VA +CF+ N +
Sbjct: 256 GSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQ----QLPKQAQVKSVAPFGLCFNSNKIN 311
Query: 361 VGRLIGDMVFEFERGVEILIEKERVLADVGGGVHCVGIGRSEMLGLASNIFGNFHQQNLW 420
+ D+V + G I E ++ GV C+G+ M A G +
Sbjct: 312 AYPSV-DLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRAEITLGARQLEENL 370
Query: 421 VEFDLASRRVGFAKA 435
V FDLA RVGF+ +
Sbjct: 371 VVFDLARSRVGFSTS 385
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 69/386 (17%), Positives = 128/386 (33%), Gaps = 88/386 (22%)
Query: 98 EMVLDTGSQLSWIKCHKKAPAXXXXXXXXXXXXXXXVLPCTHPLC-------KPRIVDFT 150
+VLD L W C P +PC+ P C P +
Sbjct: 25 SLVLDVAGPLVWSTCKGGQPPAE--------------IPCSSPTCLLANAYPAPGCPAPS 70
Query: 151 LPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPL-------ILGCAKD--- 200
+D Y Y G A G+L +F + + P+ + CA
Sbjct: 71 CGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLL 130
Query: 201 ---TSEDKGILGMNLGRLSFASQAK-----ISKFSYCVPTRVSRVGYTPTGSFYLGENPN 252
G+ G+ L+ +Q ++F C+PT V G P
Sbjct: 131 ASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAI-------FGGGP- 182
Query: 253 SAGFRYVSFLTFPQSQRSPNLDPL-------AYSVPMQGVRIQGKRLDIPATAFHPDASG 305
+ +PQ +S PL A+ + + + + R+ +P A
Sbjct: 183 ---------VPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGAL-----A 228
Query: 306 SGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVA------DMCFD---- 355
+G ++ + + L Y + + + + G +C+D
Sbjct: 229 TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVVAVAPFGVCYDTKTL 288
Query: 356 GNAMEVGRLIGDMVFEFERGVEILIEKERVLADVGGGVHCVGIGRSEMLGLASN------ 409
GN + G + ++ + G + + + + DV G CV EM G+A+
Sbjct: 289 GNNLG-GYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAF--VEMKGVAAGDGRAPA 345
Query: 410 -IFGNFHQQNLWVEFDLASRRVGFAK 434
I G ++ ++FD+ +R+GF++
Sbjct: 346 VILGGAQMEDFVLDFDMEKKRLGFSR 371
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 70/359 (19%), Positives = 140/359 (38%), Gaps = 45/359 (12%)
Query: 88 LPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAXXXXXXXXXXXXXXXVLPCTHPLCKPRIV 147
+ +G+ Q +++DTGS W+ P T CK +
Sbjct: 18 ITVGSNNQKLNVIVDTGSSDLWV------PDVNVDCQVTYSDQ-------TADFCKQKGT 64
Query: 148 DFTLPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTSEDKGI 207
+ Q+ + Y DG+ ++G L K+ F S +L TS D+GI
Sbjct: 65 YDPSGSSASQDLNTPFKIGYGDGSSSQGTLYKDTVGFGGV-SIKNQVLADVDSTSIDQGI 123
Query: 208 LGMNLGRLSFASQAKISKFSY-CVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQ 266
LG+ + + SY VP + + G ++ L N A + F
Sbjct: 124 LGVGY-------KTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQIIFGGVDN 176
Query: 267 SQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYN 326
++ S +L L + + +RI +++ + D + ++DSG+ TYL
Sbjct: 177 AKYSGSLIALPVTSDRE-LRISLGSVEVSGKTINTD---NVDVLLDSGTTITYL----QQ 228
Query: 327 KIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAM-EVG-RLIGDMVFEFERGVEILIEKER 384
+ ++I++ ++ + +GN+ EV L GD+VF F + +I +
Sbjct: 229 DLADQIIKAFNGKLTQDS----------NGNSFYEVDCNLSGDVVFNFSKNAKISVPASE 278
Query: 385 VLADVGGGVHCVGIGRSEMLGLA--SNIFGNFHQQNLWVEFDLASRRVGFAKAECSRSA 441
A + G + ++L +NI G+ ++ ++ +DL + A+ + + ++
Sbjct: 279 FAASLQGD-DGQPYDKCQLLFDVNDANILGDNFLRSAYIVYDLDDNEISLAQVKYTSAS 336
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 73/372 (19%), Positives = 133/372 (35%), Gaps = 60/372 (16%)
Query: 98 EMVLDTGSQLSWIKCHK-KAPAXXXXXXXXXXXXXXXVLP-CTHPLC------KPRIVDF 149
+VLD L W C ++PA P C P C KP
Sbjct: 27 SLVLDVAGLLVWSTCEGGQSPAEIACSSPTCLLANAYPAPGCPAPSCGSDRHDKPCTAYP 86
Query: 150 TLPTD--CDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTSEDKGI 207
+ P C L H + F A+ T + + AA + L+ + ++ G+
Sbjct: 87 SNPVTGACAAGSLFH-TRFAANTTDGNKPVSEVNVRVLAACAPSKLLASLPRGSTGVAGL 145
Query: 208 LGMNLGRLS-FASQAKI-SKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFP 265
G L S AS K+ +KF C+PT V G P L +P
Sbjct: 146 AGSGLALPSQVASAQKVPNKFLLCLPTGGPGVAI-------FGGGP----------LPWP 188
Query: 266 QSQRSPNLDPL-------AYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFT 318
Q +S + PL A+ + + ++++ R+ I A +G ++ + +
Sbjct: 189 QFTQSMDYTPLVAKGGSPAHYISARSIKVENTRVPISERAL-----ATGGVMLSTRLPYV 243
Query: 319 YLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVA------DMCFDGNAM---EVGRLIGDMV 369
L Y + + + + G ++C+D + G + +++
Sbjct: 244 LLRRDVYRPLVDAFTKALAAQPANGAPVARAVKPVAPFELCYDTKTLGNNPGGYWVPNVL 303
Query: 370 FEFERGVEILIEKERVLADVGGGVHCVGIGRSEMLGLASN-------IFGNFHQQNLWVE 422
E + G + + + + DV G CV EM G+ + I G ++ ++
Sbjct: 304 LELDGGSDWAMTGKNSMVDVKPGTACVAF--VEMKGVDAGDGSAPAVILGGAQMEDFVLD 361
Query: 423 FDLASRRVGFAK 434
FD+ +R+GF +
Sbjct: 362 FDMEKKRLGFLR 373
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 74/365 (20%), Positives = 144/365 (39%), Gaps = 57/365 (15%)
Query: 88 LPIGTPPQTQEMVLDTGSQLSW-----IKCHKKAPAXXXXXXXXXXXXXXXVLPCTHPLC 142
+ +G+ Q +++DTGS W I C T C
Sbjct: 18 ITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQ------------------TADFC 59
Query: 143 KPRIVDFTLPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTS 202
K + + Q+ +S Y DG+ ++G L K+ F S +L TS
Sbjct: 60 KQKGTYDPSGSSASQDLNTPFSIGYGDGSSSQGTLYKDTVGFGGV-SIKNQVLADVDSTS 118
Query: 203 EDKGILGMNLGRLSFASQAKISKFSY-CVPTRVSRVGYTPTGSFYLGEN-PNSAGFRYVS 260
D+GILG+ + + SY VP + + G ++ L N P+SA + +
Sbjct: 119 IDQGILGVGY-------KTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDSATGQII- 170
Query: 261 FLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYL 320
F ++ S +L L + + +RI +++ + D + ++DSG+ TYL
Sbjct: 171 FGGVDNAKYSGSLIALPVTSDRE-LRISLGSVEVSGKTINTD---NVDVLLDSGTTITYL 226
Query: 321 VDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAM-EVG-RLIGDMVFEFERGVEI 378
+ ++I++ ++ + +GN+ EV L GD+VF F + +I
Sbjct: 227 ----QQDLADQIIKAFNGKLTQDS----------NGNSFYEVDCNLSGDVVFNFSKNAKI 272
Query: 379 LIEKERVLADVGGGVHCVGIGRSEML--GLASNIFGNFHQQNLWVEFDLASRRVGFAKAE 436
+ A G + ++L +NI G+ ++ ++ +DL + A+ +
Sbjct: 273 SVPASDFAASTQGD-DGQPYDKCQLLFDVNKANILGDNFLRSAYIVYDLDDNEISIAQVK 331
Query: 437 CSRSA 441
+ ++
Sbjct: 332 YTSAS 336
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 111/295 (37%), Gaps = 55/295 (18%)
Query: 82 MALVVSLPIGTPPQTQEMVLDTGSQLSWI-----KCHKKAPAXXXXXXXXXXXXXXXVLP 136
++ + IG+ Q +++DTGS W+ C K P
Sbjct: 12 VSYAADITIGSNKQKFNVIVDTGSSDLWVPDASVTCDKPRPGQ----------------- 54
Query: 137 CTHPLCKPRIVDFTLPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILG 196
+ CK + + + QN + Y DG+ ++G L K+ F A T +
Sbjct: 55 -SADFCKGKGIYTPKSSTTSQNLGTPFYIGYGDGSSSQGTLYKDTVGFGGASITKQVFAD 113
Query: 197 CAKDTSEDKGILGMNLGRLSFASQAKISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGF 256
K TS +GILG + + + + VP + G ++ L N +A
Sbjct: 114 ITK-TSIPQGILG-----IGYKTNEAAGDYD-NVPVTLKNQGVIAKNAYSLYLNSPNAAT 166
Query: 257 RYVSFLTFPQSQRSPNLDPLAYSVPMQG---VRIQGKRLDIPATAFHPDASGSGQTIVDS 313
+ F +++ S +L +VP+ +RI L A + +G+ ++DS
Sbjct: 167 GQIIFGGVDKAKYSGSL----IAVPVTSDRELRITLNSL----KAVGKNINGNIDVLLDS 218
Query: 314 GSEFTYLVDVAYNKIKEEIVRLAGPRMK---KGYVY-------GGVADMCFDGNA 358
G+ TYL + ++I+ +K +G+ + G D FD NA
Sbjct: 219 GTTITYL----QQDVAQDIIDAFQAELKSDGQGHTFYVTDCQTSGTVDFNFDNNA 269
>pdb|1VKP|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At5g08170, Agmatine Iminohydrolase
pdb|1VKP|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At5g08170, Agmatine Iminohydrolase
pdb|2Q3U|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g08170,
Agmatine Iminohydrolase
pdb|2Q3U|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g08170,
Agmatine Iminohydrolase
Length = 383
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 263 TFPQSQRSPN-LDPLAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLV 321
T PQ +RS L L+ S+ +G +IQ +L IP + + SG I G
Sbjct: 246 TDPQYERSVEALSVLSNSIDARGRKIQVIKLYIPEPLYXTEEESSG--ITQDG------- 296
Query: 322 DVAYNKIKEEIVRLAGPRMKKGYVY-----GGVADMCFDGNAMEVGRLIGDMVFEFERGV 376
E I RLAG R+ YV GG+ F G+ + I + F
Sbjct: 297 --------EAIPRLAGTRLAASYVNFYIANGGIIAPQF-GDPIRDKEAIRVLSDTFPHHS 347
Query: 377 EILIEKERVLADVGGGVHCV 396
+ IE R + GG +HC+
Sbjct: 348 VVGIENAREIVLAGGNIHCI 367
>pdb|3H7C|X Chain X, Crystal Structure Of Arabidopsis Thaliana Agmatine
Deiminase From Cell Free Expression
Length = 383
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 263 TFPQSQRSPN-LDPLAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLV 321
T PQ +RS L L+ S+ +G +IQ +L IP + + SG T
Sbjct: 246 TDPQYERSVEALSVLSNSIDARGRKIQVIKLYIPEPLYXTEEESSGIT------------ 293
Query: 322 DVAYNKIKEEIVRLAGPRMKKGYVY-----GGVADMCFDGNAMEVGRLIGDMVFEFERGV 376
+ E I RLAG R+ YV GG+ F G+ + I + F
Sbjct: 294 -----QDGEAIPRLAGTRLAASYVNFYIANGGIIAPQF-GDPIRDKEAIRVLSDTFPHHS 347
Query: 377 EILIEKERVLADVGGGVHCV 396
+ IE R + GG +HC+
Sbjct: 348 VVGIENAREIVLAGGNIHCI 367
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 77/320 (24%)
Query: 81 SMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAXXXXXXXXXXXXXXXVLPCTHP 140
++ + +G+ Q +++DTGS WI P ++
Sbjct: 11 AITYTADITVGSDNQKLNVIVDTGSSDLWI-------------------------PDSNV 45
Query: 141 LCKPRIV----DFT--------LPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQ 188
+C P+ DF + QN + Y DG++A+G L K+
Sbjct: 46 ICIPKWRGDKGDFCKSAGSYSPASSRTSQNLNTRFDIKYGDGSYAKGKLYKDTVGIGGV- 104
Query: 189 STLPLILGCAKDTSEDKGILGMNLGRLSFASQAKISKFSY-CVPTRVSRVGYTPTGSFYL 247
S + TS KGILG+ + ++F Y +P + G ++ L
Sbjct: 105 SVRDQLFANVWSTSARKGILGIGF------QSGEATEFDYDNLPISLRNQGIIGKAAYSL 158
Query: 248 GENPNSAGFRYVSFLTFPQSQRSPNLDPL------AYSVPMQGVRIQGKRLDIPATAFHP 301
N A + F +++ S +L L +V ++ V ++G+ +D
Sbjct: 159 YLNSAEASTGQIIFGGIDKAKYSGSLVDLPITSEKKLTVGLRSVNVRGRNVD-------- 210
Query: 302 DASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMK------KGYV----YGGVAD 351
+ ++DSG+ +Y I I+ G +MK K YV G D
Sbjct: 211 ---ANTNVLLDSGTTISYFT----RSIVRNILYAIGAQMKFDSAGNKVYVADCKTSGTID 263
Query: 352 MCFDGNAMEVGRLIGDMVFE 371
F GN +++ + + +F+
Sbjct: 264 FQF-GNNLKISVPVSEFLFQ 282
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 74/362 (20%), Positives = 138/362 (38%), Gaps = 63/362 (17%)
Query: 88 LPIGTPPQTQEMVLDTGSQLSWI-----KCHKKAPAXXXXXXXXXXXXXXXVLPCTHPLC 142
+ +G+ Q Q +++DTGS W+ +C K C
Sbjct: 18 VSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVD------------------------C 53
Query: 143 KPRIVDFTLPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTS 202
K + +N ++ Y DG+ ++G K+ T + T I + TS
Sbjct: 54 KSSGTFTPSSSSSYKNLGAAFTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQ-TS 112
Query: 203 EDKGILGMNL--GRLSFASQAKISKFSY-CVPTRVSRVGYTPTGSFYLGENPNSAGFRYV 259
D+GILG+ + + + + +Y VP + + G T ++ L N SA +
Sbjct: 113 VDQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAETGTI 172
Query: 260 SFLTFPQSQRSPNLDPLAYSV-PMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFT 318
F ++ S L +A V Q + I +++ ++F + G G ++DSG+ T
Sbjct: 173 IFGGVDNAKYSGKL--VAEQVTSSQALTISLASVNLKGSSF---SFGDG-ALLDSGTTLT 226
Query: 319 YLVDVAYNKIKEEIVRLAGPRM----KKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFER 374
Y + ++ AG R+ + Y+Y D N G VF F
Sbjct: 227 YFP----SDFAAQLADKAGARLVQVARDQYLY------FIDCNTDTSGT----TVFNFGN 272
Query: 375 GVEILIEKERVLADVGGGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAK 434
G +I + + G G GI S+ I G+ ++ ++ ++L + + A+
Sbjct: 273 GAKITVPNTEYVYQNGDGTCLWGIQPSD-----DTILGDNFLRHAYLLYNLDANTISIAQ 327
Query: 435 AE 436
+
Sbjct: 328 VK 329
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 88 LPIGTPPQTQEMVLDTGSQLSWIKCHK 114
+ IGTPPQT ++V DTGS W+ K
Sbjct: 24 IGIGTPPQTFKVVFDTGSSNVWVPSSK 50
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 88 LPIGTPPQTQEMVLDTGSQLSWIKCHK 114
+ IGTPPQT ++V DTGS W+ K
Sbjct: 24 IGIGTPPQTFKVVFDTGSSNVWVPSSK 50
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 88 LPIGTPPQTQEMVLDTGSQLSWIKCHK 114
+ IGTPPQT ++V DTGS W+ K
Sbjct: 20 IGIGTPPQTFKVVFDTGSSNVWVPSSK 46
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 88 LPIGTPPQTQEMVLDTGSQLSWIKCHK 114
+ IGTPPQT ++V DTGS W+ K
Sbjct: 21 IGIGTPPQTFKVVFDTGSSNVWVPSSK 47
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 88 LPIGTPPQTQEMVLDTGSQLSWIKCHK 114
+ IGTPPQT ++V DTGS W+ K
Sbjct: 24 IGIGTPPQTFKVVFDTGSSNVWVPSSK 50
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 88 LPIGTPPQTQEMVLDTGSQLSWIKCHK 114
+ IGTPPQT ++V DTGS W+ K
Sbjct: 17 IGIGTPPQTFKVVFDTGSSNVWVPSSK 43
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 88 LPIGTPPQTQEMVLDTGSQLSWIKCHK 114
+ IGTPPQT ++V DTGS W+ K
Sbjct: 24 IGIGTPPQTFKVVFDTGSSNVWVPSSK 50
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 90 IGTPPQTQEMVLDTGSQLSWIKCHK 114
IGTPPQT ++V DTGS W+ K
Sbjct: 69 IGTPPQTFKVVFDTGSSNVWVPSSK 93
>pdb|1IZD|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase
pdb|1IZE|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase Complexed With Pepstatin
Length = 323
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 17/125 (13%)
Query: 310 IVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMV 369
I D+G+ L D + E++ + + GYV+ A + + IGD
Sbjct: 212 IADTGTTLLLLDDSIVDAYYEQVNGASYDSSQGGYVFPSSASLP------DFSVTIGDYT 265
Query: 370 FEFERGVEILIEKERV-LADVGGGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASR 428
+ E + ADVG G GI + +G + IFG+ ++ +V FD +
Sbjct: 266 --------ATVPGEYISFADVGNGQTFGGIQSNSGIGFS--IFGDVFLKSQYVVFDASGP 315
Query: 429 RVGFA 433
R+GFA
Sbjct: 316 RLGFA 320
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 90 IGTPPQTQEMVLDTGSQLSWIKCHK 114
IGTPPQT +++ DTGS W+ K
Sbjct: 23 IGTPPQTFKVIFDTGSANLWVPSTK 47
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 88 LPIGTPPQTQEMVLDTGSQLSWIKCHK 114
+ IGTPPQ ++ DTGS + W+ K
Sbjct: 19 IGIGTPPQKFTVIFDTGSSVLWVPSSK 45
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 86 VSLPIGTPPQTQEMVLDTGSQLSWIKCHK 114
+ +GTPPQ +++LDTGS W+ ++
Sbjct: 17 TDITLGTPPQNFKVILDTGSSNLWVPSNE 45
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 86 VSLPIGTPPQTQEMVLDTGSQLSWIKCHK 114
+ +GTPPQ +++LDTGS W+ ++
Sbjct: 17 TDITLGTPPQNFKVILDTGSSNLWVPSNE 45
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 86 VSLPIGTPPQTQEMVLDTGSQLSWIKCHK 114
+ +GTPPQ +++LDTGS W+ ++
Sbjct: 17 TDITLGTPPQNFKVILDTGSSNLWVPSNE 45
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 85 VVSLPIGTPPQTQEMVLDTGSQLSWIKCHKK 115
VV++ +G+P T +++DTGS +W+ K
Sbjct: 15 VVNVGVGSPATTYSLLVDTGSSNTWLGADKS 45
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 12/164 (7%)
Query: 157 QNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTSEDKGILGMNLGRLS 216
QN +S Y DGT ++G K+ F T TS D+GILG +G +
Sbjct: 73 QNLNSPFSIEYGDGTTSQGTWYKDTIGFGGISITKQQFADVTS-TSVDQGILG--IGYKT 129
Query: 217 FASQAKISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPL 276
++ VP + G ++ L N A + F ++ S L L
Sbjct: 130 HEAEGNYDN----VPVTLKNQGIISKNAYSLYLNSRQATSGQIIFGGVDNAKYSGTLIAL 185
Query: 277 AYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYL 320
+ + +RI + + + + D ++DSG+ TYL
Sbjct: 186 PVTSDNE-LRIHLNTVKVAGQSINADVD----VLLDSGTTITYL 224
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 90 IGTPPQTQEMVLDTGSQLSWI 110
IGTPPQ +V DTGS W+
Sbjct: 21 IGTPPQCFTVVFDTGSSNLWV 41
>pdb|3O9N|A Chain A, Crystal Structure Of A New Form Of Xylanase-A-Amylase
Inhibitor Protein(Xaip-Iii) At 2.4 A Resolution
Length = 272
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 28/130 (21%)
Query: 247 LGENPNSAGFR--YVSFLTFPQ-SQRSPNLDPLAYSVPMQGVRIQGKR--LDIPATAFHP 301
LG NSA F +V F PQ S S N + L + ++ + K+ L PA HP
Sbjct: 164 LGTVINSATFDAIWVQFYNNPQCSYSSGNAEALMNAWREWSMKARTKKVFLGFPA---HP 220
Query: 302 DASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVA--DMCFDGNAM 359
DA+GSG Y+ K+K + P KK Y +GG+ D +D +
Sbjct: 221 DAAGSG-----------YMPPA---KVKFHVF----PAAKKSYKFGGIMLWDSYWDTVSQ 262
Query: 360 EVGRLIGDMV 369
+++GD V
Sbjct: 263 FSNKILGDGV 272
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 90 IGTPPQTQEMVLDTGSQLSWI 110
IGTPPQ +V DTGS W+
Sbjct: 19 IGTPPQEFTVVFDTGSSDLWV 39
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 88 LPIGTPPQTQEMVLDTGSQLSWIK---CHKKA 116
+ IGTPP++ +++ DTGS W+ C +A
Sbjct: 18 ISIGTPPESFKVIFDTGSSNLWVSSSHCSAQA 49
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 391 GGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAK 434
G C G G G+ NIFG+ + V FDL + R+G+A+
Sbjct: 286 GSSTCFG-GLQSSSGIGINIFGDVALKAALVVFDLGNERLGWAQ 328
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 71 SLRYRSKFKYSMALVVSLPIGTPPQTQEMVLDTGSQLSWIK---CHKKA 116
S+ Y A + IGTPPQ ++ DTGS W+ C +A
Sbjct: 1 SVTYEPMAYMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQA 49
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 90 IGTPPQTQEMVLDTGSQLSWI---KCH 113
+GTPPQ ++ DTGS W+ KC+
Sbjct: 60 VGTPPQKFTVIFDTGSSNLWVPSAKCY 86
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 67 ARAPSLRYRSKFKYSMALVVSLPIGTPPQTQEMVLDTGSQLSWI 110
A+ P + Y M ++ IG+PPQ ++ DTGS W+
Sbjct: 13 AKEPLINY-----LDMEYFGTISIGSPPQNFTVIFDTGSSNLWV 51
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 61 KQNRKVARAPSLRYRSKFKYSMALVVSLPIGTPPQTQEMVL 101
K +R V A S +R F S + VV LP PQ+ + +L
Sbjct: 46 KAHRAVLAASSSYFRDLFNNSRSAVVELPAAVQPQSFQQIL 86
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 22 VEMTVGSPPQTLNILVDTGS 41
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 25 VEMTVGSPPQTLNILVDTGS 44
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 19 VEMTVGSPPQTLNILVDTGS 38
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 22 VEMTVGSPPQTLNILVDTGS 41
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 20 VEMTVGSPPQTLNILVDTGS 39
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 20 VEMTVGSPPQTLNILVDTGS 39
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 22 VEMTVGSPPQTLNILVDTGS 41
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 17 VEMTVGSPPQTLNILVDTGS 36
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 21 VEMTVGSPPQTLNILVDTGS 40
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 20 VEMTVGSPPQTLNILVDTGS 39
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 25 VEMTVGSPPQTLNILVDTGS 44
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 20 VEMTVGSPPQTLNILVDTGS 39
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 22 VEMTVGSPPQTLNILVDTGS 41
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 23 VEMTVGSPPQTLNILVDTGS 42
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 20 VEMTVGSPPQTLNILVDTGS 39
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 19 VEMTVGSPPQTLNILVDTGS 38
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 16 VEMTVGSPPQTLNILVDTGS 35
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 42 VEMTVGSPPQTLNILVDTGS 61
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 33 VEMTVGSPPQTLNILVDTGS 52
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 36 VEMTVGSPPQTLNILVDTGS 55
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 32 VEMTVGSPPQTLNILVDTGS 51
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 36 VEMTVGSPPQTLNILVDTGS 55
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 36 VEMTVGSPPQTLNILVDTGS 55
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 36 VEMTVGSPPQTLNILVDTGS 55
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 VSLPIGTPPQTQEMVLDTGS 105
V + +G+PPQT +++DTGS
Sbjct: 37 VEMTVGSPPQTLNILVDTGS 56
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 61 KQNRKVARAPSLRYRSKFKYSMALVVSLPIGTPPQTQEMVLDTGS 105
K+ V +LR +S Y V + +G+PPQT +++DTGS
Sbjct: 58 KKGSFVEMVDNLRGKSGQGY----YVEMTVGSPPQTLNILVDTGS 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,737,929
Number of Sequences: 62578
Number of extensions: 479003
Number of successful extensions: 935
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 842
Number of HSP's gapped (non-prelim): 112
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)