Query 042725
Match_columns 441
No_of_seqs 221 out of 1484
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 08:49:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 6E-58 1.3E-62 459.5 36.4 333 81-439 82-430 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 5E-58 1.1E-62 462.1 30.7 306 72-439 109-450 (482)
3 KOG1339 Aspartyl protease [Pos 100.0 8.7E-54 1.9E-58 427.2 35.1 336 75-438 38-397 (398)
4 cd05490 Cathepsin_D2 Cathepsin 100.0 1.4E-53 3E-58 416.1 30.2 296 79-434 2-325 (325)
5 cd05486 Cathespin_E Cathepsin 100.0 3E-53 6.5E-58 412.0 28.1 290 84-434 1-316 (316)
6 cd05478 pepsin_A Pepsin A, asp 100.0 5.4E-53 1.2E-57 410.4 29.1 293 76-434 3-317 (317)
7 cd05472 cnd41_like Chloroplast 100.0 2.4E-52 5.2E-57 402.8 32.1 289 83-437 1-299 (299)
8 cd05487 renin_like Renin stimu 100.0 2.2E-52 4.8E-57 407.5 30.7 296 78-435 3-326 (326)
9 cd06098 phytepsin Phytepsin, a 100.0 2.6E-52 5.7E-57 405.2 30.1 287 77-434 4-317 (317)
10 cd05477 gastricsin Gastricsins 100.0 4.5E-52 9.7E-57 404.3 30.3 293 81-435 1-318 (318)
11 cd06096 Plasmepsin_5 Plasmepsi 100.0 8.8E-52 1.9E-56 403.1 29.7 292 83-438 3-326 (326)
12 cd05485 Cathepsin_D_like Cathe 100.0 2.5E-51 5.4E-56 400.3 29.4 298 76-434 4-329 (329)
13 PTZ00147 plasmepsin-1; Provisi 100.0 2.7E-51 5.9E-56 410.2 29.8 297 72-436 128-450 (453)
14 PTZ00013 plasmepsin 4 (PM4); P 100.0 4.7E-51 1E-55 407.7 30.4 296 73-436 128-449 (450)
15 cd05488 Proteinase_A_fungi Fun 100.0 8.8E-51 1.9E-55 395.2 31.2 292 78-434 5-320 (320)
16 cd05473 beta_secretase_like Be 100.0 6.4E-50 1.4E-54 395.9 28.7 314 82-439 2-349 (364)
17 cd05476 pepsin_A_like_plant Ch 100.0 1.1E-49 2.4E-54 377.4 27.5 255 83-437 1-265 (265)
18 cd05489 xylanase_inhibitor_I_l 100.0 1.6E-48 3.4E-53 383.2 32.1 319 90-435 2-361 (362)
19 cd06097 Aspergillopepsin_like 100.0 1.4E-47 3.1E-52 365.6 23.9 256 84-434 1-278 (278)
20 cd05475 nucellin_like Nucellin 100.0 9.2E-47 2E-51 358.7 26.9 250 83-437 2-273 (273)
21 cd05474 SAP_like SAPs, pepsin- 100.0 8.9E-46 1.9E-50 356.6 25.5 271 83-435 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 3.6E-46 7.7E-51 362.9 19.8 290 83-435 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 8.1E-41 1.8E-45 319.9 25.6 258 84-434 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 99.9 9.9E-28 2.1E-32 209.7 11.0 153 84-249 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 6.9E-24 1.5E-28 185.3 15.6 157 277-434 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 4.3E-22 9.2E-27 162.4 11.6 99 86-210 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.1 9.1E-06 2E-10 63.8 7.6 92 83-212 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.0 0.0067 1.5E-07 49.9 9.3 95 81-212 9-103 (121)
29 PF13650 Asp_protease_2: Aspar 96.7 0.014 3E-07 44.9 8.6 89 87-212 2-90 (90)
30 cd05479 RP_DDI RP_DDI; retrope 96.0 0.034 7.5E-07 45.9 7.7 24 408-431 100-123 (124)
31 cd05479 RP_DDI RP_DDI; retrope 95.3 0.1 2.2E-06 43.1 8.2 92 81-212 14-107 (124)
32 PF11925 DUF3443: Protein of u 94.4 0.5 1.1E-05 45.8 11.0 47 166-213 83-149 (370)
33 PF08284 RVP_2: Retroviral asp 93.3 0.78 1.7E-05 38.5 9.1 28 408-435 105-132 (135)
34 TIGR03698 clan_AA_DTGF clan AA 91.5 1.6 3.5E-05 34.9 8.6 22 408-429 85-106 (107)
35 cd05484 retropepsin_like_LTR_2 90.9 0.26 5.6E-06 38.1 3.3 26 84-111 1-26 (91)
36 cd06095 RP_RTVL_H_like Retrope 89.6 2 4.3E-05 32.8 7.3 25 87-113 2-26 (86)
37 PF13650 Asp_protease_2: Aspar 88.1 0.7 1.5E-05 35.1 3.8 29 285-328 3-31 (90)
38 TIGR02281 clan_AA_DTGA clan AA 87.9 1 2.2E-05 36.9 4.9 34 277-328 11-44 (121)
39 PF12384 Peptidase_A2B: Ty3 tr 87.8 2.3 5E-05 36.4 6.8 22 308-329 47-68 (177)
40 COG3577 Predicted aspartyl pro 87.6 1.6 3.5E-05 38.8 6.0 96 80-212 102-197 (215)
41 cd05484 retropepsin_like_LTR_2 86.9 1.1 2.4E-05 34.5 4.3 30 284-328 4-33 (91)
42 PF13975 gag-asp_proteas: gag- 85.8 1.4 3E-05 32.4 4.1 29 285-328 13-41 (72)
43 PF13975 gag-asp_proteas: gag- 82.5 2.2 4.7E-05 31.3 4.0 30 81-112 6-35 (72)
44 cd06095 RP_RTVL_H_like Retrope 81.4 1.9 4.1E-05 32.9 3.4 29 285-328 3-31 (86)
45 cd05483 retropepsin_like_bacte 80.4 3 6.4E-05 31.9 4.3 29 285-328 7-35 (96)
46 PF02160 Peptidase_A3: Caulifl 78.8 3.8 8.3E-05 36.6 4.9 26 408-434 92-117 (201)
47 PF00077 RVP: Retroviral aspar 77.4 3.5 7.6E-05 32.1 3.9 26 86-113 8-33 (100)
48 COG3577 Predicted aspartyl pro 75.6 5.7 0.00012 35.4 4.9 34 276-327 104-137 (215)
49 cd06094 RP_Saci_like RP_Saci_l 72.5 14 0.00031 28.3 5.9 79 304-419 7-87 (89)
50 cd05482 HIV_retropepsin_like R 70.4 5.6 0.00012 30.5 3.3 23 87-111 2-24 (87)
51 PF00077 RVP: Retroviral aspar 68.2 6 0.00013 30.8 3.2 26 284-324 9-34 (100)
52 cd05481 retropepsin_like_LTR_1 67.4 6.1 0.00013 30.6 3.1 21 309-329 13-33 (93)
53 TIGR03698 clan_AA_DTGF clan AA 65.1 41 0.00089 26.7 7.5 45 164-212 48-92 (107)
54 PF09668 Asp_protease: Asparty 61.8 11 0.00023 31.1 3.5 29 285-328 29-57 (124)
55 PF05984 Cytomega_UL20A: Cytom 59.6 23 0.00051 26.4 4.6 15 5-19 3-17 (100)
56 PF12384 Peptidase_A2B: Ty3 tr 54.5 16 0.00034 31.4 3.4 27 86-112 35-61 (177)
57 PF07172 GRP: Glycine rich pro 53.8 8.4 0.00018 30.1 1.6 21 5-25 3-23 (95)
58 KOG0012 DNA damage inducible p 44.5 1.9E+02 0.0042 28.3 9.4 39 394-435 307-346 (380)
59 COG5550 Predicted aspartyl pro 42.5 16 0.00035 29.8 1.6 20 309-328 29-49 (125)
60 cd05470 pepsin_retropepsin_lik 39.2 28 0.0006 27.3 2.6 17 308-324 13-29 (109)
61 PF09668 Asp_protease: Asparty 37.9 54 0.0012 27.0 4.1 27 83-111 24-50 (124)
62 cd00303 retropepsin_like Retro 32.6 75 0.0016 22.4 4.0 19 309-327 12-30 (92)
63 PF15240 Pro-rich: Proline-ric 29.6 30 0.00064 30.3 1.3 15 9-23 2-16 (179)
64 PF08284 RVP_2: Retroviral asp 28.5 77 0.0017 26.4 3.7 26 84-111 22-47 (135)
65 cd06097 Aspergillopepsin_like 22.3 79 0.0017 29.7 3.0 16 308-323 15-30 (278)
66 cd05480 NRIP_C NRIP_C; putativ 21.2 4.2E+02 0.0091 20.9 10.2 30 395-427 73-103 (103)
67 cd05475 nucellin_like Nucellin 20.8 96 0.0021 29.1 3.2 27 86-112 164-193 (273)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=6e-58 Score=459.50 Aligned_cols=333 Identities=26% Similarity=0.508 Sum_probs=268.8
Q ss_pred eEEEEEEEeeCCCCceEEEEEECCCCceeEeCCCCCCCC--CCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCC
Q 042725 81 SMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAP--PTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQN 158 (441)
Q Consensus 81 ~~~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~~~~--~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~ 158 (441)
+.+|+++|.||||||++.|+|||||+++||+|.+|..|. .++.|||++|+||+.++|.++.|..... ...|..+
T Consensus 82 ~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~----~~~c~~~ 157 (431)
T PLN03146 82 GGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN----QASCSDE 157 (431)
T ss_pred CccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCC----CCCCCCC
Confidence 568999999999999999999999999999999997554 5789999999999999999999975432 2347666
Q ss_pred CCcEEeEEeCCCceEEeeEEEEEEeeCCC----cccCCeEEEeeeCCC-----CcceeEeecCCCCCccccccc---Cce
Q 042725 159 RLCHYSYFYADGTFAEGNLVKEKFTFSAA----QSTLPLILGCAKDTS-----EDKGILGMNLGRLSFASQAKI---SKF 226 (441)
Q Consensus 159 ~~~~~~~~Yg~g~~~~G~~~~D~v~~g~~----~~~~~~~fg~~~~~~-----~~~GIlGLg~~~~s~~~q~~~---~~F 226 (441)
+.|.|.+.|++|+.+.|.+++|+++|++. ..++++.|||+.... ..+||||||+..++++.|+.. ++|
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~F 237 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKF 237 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcE
Confidence 77999999999998889999999999973 257899999998753 478999999999999999753 589
Q ss_pred eEecCCCCCCCCcCCccceeeCCCCCC--CCcceeeeeecCCCCCCCCCCCceeEEeeeeEEECCEEeecCCCccccCCC
Q 042725 227 SYCVPTRVSRVGYTPTGSFYLGENPNS--AGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDAS 304 (441)
Q Consensus 227 s~~l~~~~~~~~~~~~g~l~lG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v~g~~~~~~~~~~~~~~~ 304 (441)
++||.+..... ...|.|.||+...- ..+.|+|++... .+.+|.|.|++|+||++.+.++...+. ..
T Consensus 238 SycL~~~~~~~--~~~g~l~fG~~~~~~~~~~~~tPl~~~~--------~~~~y~V~L~gIsVgg~~l~~~~~~~~--~~ 305 (431)
T PLN03146 238 SYCLVPLSSDS--NGTSKINFGTNAIVSGSGVVSTPLVSKD--------PDTFYYLTLEAISVGSKKLPYTGSSKN--GV 305 (431)
T ss_pred EEECCCCCCCC--CCcceEEeCCccccCCCCceEcccccCC--------CCCeEEEeEEEEEECCEECcCCccccc--cC
Confidence 99997542211 14799999985321 235566655321 135999999999999999887665543 13
Q ss_pred CCCcEEEccccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcccccccccceEEEEcCceEEEEcCCc
Q 042725 305 GSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERGVEILIEKER 384 (441)
Q Consensus 305 ~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~i~f~~~gg~~~~i~~~~ 384 (441)
+...+||||||++++||+++|+++.+++.+.++...... ......+|+..... ..+|+|+|+| +|..+.|+|++
T Consensus 306 ~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~--~~~~~~~C~~~~~~---~~~P~i~~~F-~Ga~~~l~~~~ 379 (431)
T PLN03146 306 EEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSD--PQGLLSLCYSSTSD---IKLPIITAHF-TGADVKLQPLN 379 (431)
T ss_pred CCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCC--CCCCCCccccCCCC---CCCCeEEEEE-CCCeeecCcce
Confidence 345799999999999999999999999988876432211 12235689874321 2589999999 58999999999
Q ss_pred EEEEeCCCeEEEEEEecCCCCCceeeechhhhcceEEEEECCCCEEEEecCCCCc
Q 042725 385 VLADVGGGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAKAECSR 439 (441)
Q Consensus 385 y~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfA~~~c~~ 439 (441)
|++...++..|+++.... +.||||+.|||++|+|||++++|||||+++|++
T Consensus 380 ~~~~~~~~~~Cl~~~~~~----~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 380 TFVKVSEDLVCFAMIPTS----SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred eEEEcCCCcEEEEEecCC----CceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 999877677899887542 359999999999999999999999999999986
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=5e-58 Score=462.11 Aligned_cols=306 Identities=20% Similarity=0.281 Sum_probs=240.0
Q ss_pred cccccccceeEEEEEEEeeCCCCceEEEEEECCCCceeEeCCCCC--CCCCCCCCCCCCCCCcccccCCCCCCCCCccCC
Q 042725 72 LRYRSKFKYSMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKA--PAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDF 149 (441)
Q Consensus 72 ~~~~~~~~~~~~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~--~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~ 149 (441)
....+.++.+.+|+++|+||||||+|.|+|||||++|||||..|. .|..|+.||+++||||+.+.+..
T Consensus 109 ~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~---------- 178 (482)
T PTZ00165 109 LQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGD---------- 178 (482)
T ss_pred cceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCC----------
Confidence 455667778999999999999999999999999999999999997 78999999999999999843110
Q ss_pred CCCCCCCCCCCcEEeEEeCCCceEEeeEEEEEEeeCCCcccCCeEEEeeeCCC-------CcceeEeecCCCCCc-----
Q 042725 150 TLPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTS-------EDKGILGMNLGRLSF----- 217 (441)
Q Consensus 150 ~~~~~c~~~~~~~~~~~Yg~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~~-------~~~GIlGLg~~~~s~----- 217 (441)
....+.++||+|+.. |.++.|+|+||+ ..++++.||++.... .+|||||||++.++.
T Consensus 179 ---------~~~~~~i~YGsGs~~-G~l~~DtV~ig~-l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~ 247 (482)
T PTZ00165 179 ---------ESAETYIQYGTGECV-LALGKDTVKIGG-LKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKK 247 (482)
T ss_pred ---------ccceEEEEeCCCcEE-EEEEEEEEEECC-EEEccEEEEEEEeccccccccccccceeecCCCcccccccCC
Confidence 112477999999764 999999999999 689999999998642 579999999987532
Q ss_pred --------cccc--ccCceeEecCCCCCCCCcCCccceeeCCCCCCCCcceeeeeecCCCCCCCCCCCceeEEeeeeEEE
Q 042725 218 --------ASQA--KISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRI 287 (441)
Q Consensus 218 --------~~q~--~~~~Fs~~l~~~~~~~~~~~~g~l~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v 287 (441)
.+|. ..+.|+++|.+... ..|.|+||+.|++.. ...+.+.+.+. ....||+|.+++|+|
T Consensus 248 ~~p~~~~l~~qgli~~~~FS~yL~~~~~-----~~G~l~fGGiD~~~~-~~~g~i~~~Pv-----~~~~yW~i~l~~i~v 316 (482)
T PTZ00165 248 ALPIVDNIKKQNLLKRNIFSFYMSKDLN-----QPGSISFGSADPKYT-LEGHKIWWFPV-----ISTDYWEIEVVDILI 316 (482)
T ss_pred CCCHHHHHHHcCCcccceEEEEeccCCC-----CCCEEEeCCcCHHHc-CCCCceEEEEc-----cccceEEEEeCeEEE
Confidence 2222 23789999975321 378999999986410 01233333222 134599999999999
Q ss_pred CCEEeecCCCccccCCCCCCcEEEccccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcccccccccc
Q 042725 288 QGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGD 367 (441)
Q Consensus 288 ~g~~~~~~~~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~ 367 (441)
+++.+... ..++.||+||||+++++|.++++++.+++ +.. .+|+... .+|+
T Consensus 317 gg~~~~~~--------~~~~~aIiDTGTSli~lP~~~~~~i~~~i----~~~-----------~~C~~~~------~lP~ 367 (482)
T PTZ00165 317 DGKSLGFC--------DRKCKAAIDTGSSLITGPSSVINPLLEKI----PLE-----------EDCSNKD------SLPR 367 (482)
T ss_pred CCEEeeec--------CCceEEEEcCCCccEeCCHHHHHHHHHHc----CCc-----------ccccccc------cCCc
Confidence 99876542 24567999999999999999999888655 221 3798754 6899
Q ss_pred eEEEEcCce-----EEEEcCCcEEEEe----CCCeEE-EEEEecCCC--CCceeeechhhhcceEEEEECCCCEEEEecC
Q 042725 368 MVFEFERGV-----EILIEKERVLADV----GGGVHC-VGIGRSEML--GLASNIFGNFHQQNLWVEFDLASRRVGFAKA 435 (441)
Q Consensus 368 i~f~~~gg~-----~~~i~~~~y~~~~----~~~~~C-~~i~~~~~~--~~~~~iLG~~fl~~~y~vfD~~~~riGfA~~ 435 (441)
|+|+| +|. +|.|+|++|+++. .++..| +++...+.. .++.||||++|||+||+|||++|+|||||++
T Consensus 368 itf~f-~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a 446 (482)
T PTZ00165 368 ISFVL-EDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPA 446 (482)
T ss_pred eEEEE-CCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEee
Confidence 99999 443 8999999999973 245689 578775432 2468999999999999999999999999999
Q ss_pred CCCc
Q 042725 436 ECSR 439 (441)
Q Consensus 436 ~c~~ 439 (441)
+|..
T Consensus 447 ~~~~ 450 (482)
T PTZ00165 447 KHDQ 450 (482)
T ss_pred ccCC
Confidence 9864
No 3
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-54 Score=427.21 Aligned_cols=336 Identities=33% Similarity=0.540 Sum_probs=271.9
Q ss_pred ccccceeEEEEEEEeeCCCCceEEEEEECCCCceeEeCCCCC-CCCC-CCC-CCCCCCCCcccccCCCCCCCCCccCCCC
Q 042725 75 RSKFKYSMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKA-PAPP-TTS-FDPSRSSSFSVLPCTHPLCKPRIVDFTL 151 (441)
Q Consensus 75 ~~~~~~~~~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~-~~~~-~~~-y~~~~SsT~~~~~c~~~~c~~~~~~~~~ 151 (441)
......+.+|+++|.||||||+|.|+|||||+++||+|..|. .|.. +.. |||++||||+.++|.++.|.....
T Consensus 38 ~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~---- 113 (398)
T KOG1339|consen 38 SLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQ---- 113 (398)
T ss_pred ccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCcccccccc----
Confidence 334444668999999999999999999999999999999997 6764 555 999999999999999999987533
Q ss_pred CCCCCCCCCcEEeEEeCCCceEEeeEEEEEEeeCCC--cccCCeEEEeeeCC-------CCcceeEeecCCCCCcccccc
Q 042725 152 PTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAA--QSTLPLILGCAKDT-------SEDKGILGMNLGRLSFASQAK 222 (441)
Q Consensus 152 ~~~c~~~~~~~~~~~Yg~g~~~~G~~~~D~v~~g~~--~~~~~~~fg~~~~~-------~~~~GIlGLg~~~~s~~~q~~ 222 (441)
.|..++.|.|.+.|++|+.+.|.+++|+|+|++. ...+++.|||+..+ ..++||||||+..+++..|+.
T Consensus 114 --~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~ 191 (398)
T KOG1339|consen 114 --SCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLP 191 (398)
T ss_pred --CcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccccccccccceEeecCCCCccceeecc
Confidence 3778899999999999778889999999999983 57778999999887 358999999999999999885
Q ss_pred c-----CceeEecCCCCCCCCcCCccceeeCCCCCCCC---cceeeeeecCCCCCCCCCCCceeEEeeeeEEECCEEeec
Q 042725 223 I-----SKFSYCVPTRVSRVGYTPTGSFYLGENPNSAG---FRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDI 294 (441)
Q Consensus 223 ~-----~~Fs~~l~~~~~~~~~~~~g~l~lG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v~g~~~~~ 294 (441)
. +.|++||.+..... ...|.|+||+.+.... +.|+|++.... .||+|.+++|.|+++. .+
T Consensus 192 ~~~~~~~~FS~cL~~~~~~~--~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~---------~~y~v~l~~I~vgg~~-~~ 259 (398)
T KOG1339|consen 192 SFYNAINVFSYCLSSNGSPS--SGGGSIIFGGVDSSHYTGSLTYTPLLSNPS---------TYYQVNLDGISVGGKR-PI 259 (398)
T ss_pred cccCCceeEEEEeCCCCCCC--CCCcEEEECCCcccCcCCceEEEeeccCCC---------ccEEEEEeEEEECCcc-CC
Confidence 4 34999998875432 2489999999997632 33666654322 3999999999999976 55
Q ss_pred CCCccccCCCCCCcEEEccccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcccccccccceEEEEcC
Q 042725 295 PATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFER 374 (441)
Q Consensus 295 ~~~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~i~f~~~g 374 (441)
....+. .+.+++|+||||++++||.++|+++.+++.+.+.. ....+.+.++|+...... ..+|+|+|+|.+
T Consensus 260 ~~~~~~---~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~----~~~~~~~~~~C~~~~~~~--~~~P~i~~~f~~ 330 (398)
T KOG1339|consen 260 GSSLFC---TDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV----VGTDGEYFVPCFSISTSG--VKLPDITFHFGG 330 (398)
T ss_pred CcceEe---cCCCCEEEECCcceeeccHHHHHHHHHHHHhheec----cccCCceeeecccCCCCc--ccCCcEEEEECC
Confidence 544443 22678999999999999999999999888766400 112345668999876332 248999999955
Q ss_pred ceEEEEcCCcEEEEeCCCeE-EEEEEecCCCCCceeeechhhhcceEEEEECC-CCEEEEec--CCCC
Q 042725 375 GVEILIEKERVLADVGGGVH-CVGIGRSEMLGLASNIFGNFHQQNLWVEFDLA-SRRVGFAK--AECS 438 (441)
Q Consensus 375 g~~~~i~~~~y~~~~~~~~~-C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~-~~riGfA~--~~c~ 438 (441)
|+.|.+++++|+++...+.. |+++....... +.||||+.|+++++++||.. ++|||||+ ..|.
T Consensus 331 g~~~~l~~~~y~~~~~~~~~~Cl~~~~~~~~~-~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 331 GAVFSLPPKNYLVEVSDGGGVCLAFFNGMDSG-PLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred CcEEEeCccceEEEECCCCCceeeEEecCCCC-ceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 89999999999998765434 98766554322 57999999999999999999 99999999 6775
No 4
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.4e-53 Score=416.14 Aligned_cols=296 Identities=22% Similarity=0.326 Sum_probs=234.4
Q ss_pred ceeEEEEEEEeeCCCCceEEEEEECCCCceeEeCCCCC----CCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCC
Q 042725 79 KYSMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKA----PAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTD 154 (441)
Q Consensus 79 ~~~~~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~----~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~ 154 (441)
+++.+|+++|.||||||+|.|+|||||+++||+|..|. .|..|+.|||++|+||+..+
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~------------------ 63 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNG------------------ 63 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCC------------------
Confidence 45889999999999999999999999999999988885 57789999999999998732
Q ss_pred CCCCCCcEEeEEeCCCceEEeeEEEEEEeeCCCcccCCeEEEeeeCCC-------CcceeEeecCCCCCccc--------
Q 042725 155 CDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTS-------EDKGILGMNLGRLSFAS-------- 219 (441)
Q Consensus 155 c~~~~~~~~~~~Yg~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~~-------~~~GIlGLg~~~~s~~~-------- 219 (441)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.||++.... .++||||||++..+...
T Consensus 64 ------~~~~i~Yg~G~-~~G~~~~D~v~~g~-~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l 135 (325)
T cd05490 64 ------TEFAIQYGSGS-LSGYLSQDTVSIGG-LQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNI 135 (325)
T ss_pred ------cEEEEEECCcE-EEEEEeeeEEEECC-EEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHH
Confidence 48999999997 57999999999998 588899999997642 47999999998765432
Q ss_pred --cc--ccCceeEecCCCCCCCCcCCccceeeCCCCCCCCcceeeeeecCCCCCCCCCCCceeEEeeeeEEECCEEeecC
Q 042725 220 --QA--KISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIP 295 (441)
Q Consensus 220 --q~--~~~~Fs~~l~~~~~~~~~~~~g~l~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v~g~~~~~~ 295 (441)
|. ..+.|++||.+..... ..|.|+||++|++ +|.+.+.+.... .+.+|.|.+++|+|+++...
T Consensus 136 ~~~g~i~~~~FS~~L~~~~~~~---~~G~l~~Gg~d~~---~~~g~l~~~~~~-----~~~~w~v~l~~i~vg~~~~~-- 202 (325)
T cd05490 136 MAQKLVEQNVFSFYLNRDPDAQ---PGGELMLGGTDPK---YYTGDLHYVNVT-----RKAYWQIHMDQVDVGSGLTL-- 202 (325)
T ss_pred HhcCCCCCCEEEEEEeCCCCCC---CCCEEEECccCHH---HcCCceEEEEcC-----cceEEEEEeeEEEECCeeee--
Confidence 22 2378999997542211 3799999998875 345555443222 24599999999999886432
Q ss_pred CCccccCCCCCCcEEEccccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcccccccccceEEEEcCc
Q 042725 296 ATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERG 375 (441)
Q Consensus 296 ~~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~i~f~~~gg 375 (441)
+..+..+||||||+++++|.+++++|.+++.+. .. ..+.+.++|+... .+|+|+|.| +|
T Consensus 203 -------~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~---~~----~~~~~~~~C~~~~------~~P~i~f~f-gg 261 (325)
T cd05490 203 -------CKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV---PL----IQGEYMIDCEKIP------TLPVISFSL-GG 261 (325)
T ss_pred -------cCCCCEEEECCCCccccCCHHHHHHHHHHhCCc---cc----cCCCEEecccccc------cCCCEEEEE-CC
Confidence 123567999999999999999999988776421 11 1245668998654 589999999 79
Q ss_pred eEEEEcCCcEEEEeC--CCeEEE-EEEecCC--CCCceeeechhhhcceEEEEECCCCEEEEec
Q 042725 376 VEILIEKERVLADVG--GGVHCV-GIGRSEM--LGLASNIFGNFHQQNLWVEFDLASRRVGFAK 434 (441)
Q Consensus 376 ~~~~i~~~~y~~~~~--~~~~C~-~i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~riGfA~ 434 (441)
+.|.|+|++|+++.. +...|+ +|+..+. ...+.||||++|||++|+|||++++|||||+
T Consensus 262 ~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 262 KVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EEEEEChHHeEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 999999999998753 335796 6765432 1245799999999999999999999999996
No 5
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=3e-53 Score=412.03 Aligned_cols=290 Identities=22% Similarity=0.340 Sum_probs=231.8
Q ss_pred EEEEEeeCCCCceEEEEEECCCCceeEeCCCCC--CCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCCCCc
Q 042725 84 LVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKA--PAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQNRLC 161 (441)
Q Consensus 84 y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~--~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~ 161 (441)
|+++|+||||||+|+|+|||||+++||+|..|. .|..++.|||++|+||+..+ |
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~~~------------------------~ 56 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVSNG------------------------E 56 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCcccccCC------------------------c
Confidence 789999999999999999999999999999997 78889999999999998754 4
Q ss_pred EEeEEeCCCceEEeeEEEEEEeeCCCcccCCeEEEeeeCC-------CCcceeEeecCCCCCc----------cccc--c
Q 042725 162 HYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDT-------SEDKGILGMNLGRLSF----------ASQA--K 222 (441)
Q Consensus 162 ~~~~~Yg~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~-------~~~~GIlGLg~~~~s~----------~~q~--~ 222 (441)
.|.+.|++|+ +.|.+++|+|+|++ ..++++.||++... ..++||||||++..+. .+|. .
T Consensus 57 ~~~i~Yg~g~-~~G~~~~D~v~ig~-~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~ 134 (316)
T cd05486 57 AFSIQYGTGS-LTGIIGIDQVTVEG-ITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVE 134 (316)
T ss_pred EEEEEeCCcE-EEEEeeecEEEECC-EEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCC
Confidence 8999999997 57999999999998 58889999998653 2679999999987653 2232 2
Q ss_pred cCceeEecCCCCCCCCcCCccceeeCCCCCCCCcceeeeeecCCCCCCCCCCCceeEEeeeeEEECCEEeecCCCccccC
Q 042725 223 ISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHPD 302 (441)
Q Consensus 223 ~~~Fs~~l~~~~~~~~~~~~g~l~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v~g~~~~~~~~~~~~~ 302 (441)
.+.|++||.+.... ...|.|+||++|++ +|.+.+.+.++. ...||.|.+++|+|+++.+..
T Consensus 135 ~~~FS~~L~~~~~~---~~~g~l~fGg~d~~---~~~g~l~~~pi~-----~~~~w~v~l~~i~v~g~~~~~-------- 195 (316)
T cd05486 135 LPMFSVYMSRNPNS---ADGGELVFGGFDTS---RFSGQLNWVPVT-----VQGYWQIQLDNIQVGGTVIFC-------- 195 (316)
T ss_pred CCEEEEEEccCCCC---CCCcEEEEcccCHH---HcccceEEEECC-----CceEEEEEeeEEEEecceEec--------
Confidence 37899999864322 14799999999876 345555443322 346999999999999987642
Q ss_pred CCCCCcEEEccccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcccccccccceEEEEcCceEEEEcC
Q 042725 303 ASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERGVEILIEK 382 (441)
Q Consensus 303 ~~~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~i~f~~~gg~~~~i~~ 382 (441)
..+..+||||||+++++|+++++++.+++ ++... .+.+.++|+... .+|+|+|+| +|+.++|+|
T Consensus 196 -~~~~~aiiDTGTs~~~lP~~~~~~l~~~~----~~~~~----~~~~~~~C~~~~------~~p~i~f~f-~g~~~~l~~ 259 (316)
T cd05486 196 -SDGCQAIVDTGTSLITGPSGDIKQLQNYI----GATAT----DGEYGVDCSTLS------LMPSVTFTI-NGIPYSLSP 259 (316)
T ss_pred -CCCCEEEECCCcchhhcCHHHHHHHHHHh----CCccc----CCcEEEeccccc------cCCCEEEEE-CCEEEEeCH
Confidence 23467999999999999999998887555 32211 234567997654 589999999 799999999
Q ss_pred CcEEEEe--CCCeEEE-EEEecCC--CCCceeeechhhhcceEEEEECCCCEEEEec
Q 042725 383 ERVLADV--GGGVHCV-GIGRSEM--LGLASNIFGNFHQQNLWVEFDLASRRVGFAK 434 (441)
Q Consensus 383 ~~y~~~~--~~~~~C~-~i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~riGfA~ 434 (441)
++|++.. .++..|+ +|+.... ...+.||||++|||++|+|||.+++|||||+
T Consensus 260 ~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 260 QAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred HHeEEecccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 9999865 3456895 6765432 1235799999999999999999999999996
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=5.4e-53 Score=410.42 Aligned_cols=293 Identities=22% Similarity=0.315 Sum_probs=236.8
Q ss_pred cccceeEEEEEEEeeCCCCceEEEEEECCCCceeEeCCCCC--CCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCCCC
Q 042725 76 SKFKYSMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKA--PAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPT 153 (441)
Q Consensus 76 ~~~~~~~~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~--~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~ 153 (441)
+.+..+.+|+++|.||||||++.|+|||||+++||+|..|. .|..++.|||++|+||+..+
T Consensus 3 l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~----------------- 65 (317)
T cd05478 3 LTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQSTG----------------- 65 (317)
T ss_pred cccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeCC-----------------
Confidence 34455889999999999999999999999999999999887 68889999999999999854
Q ss_pred CCCCCCCcEEeEEeCCCceEEeeEEEEEEeeCCCcccCCeEEEeeeCCC-------CcceeEeecCCCCC------cccc
Q 042725 154 DCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTS-------EDKGILGMNLGRLS------FASQ 220 (441)
Q Consensus 154 ~c~~~~~~~~~~~Yg~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~~-------~~~GIlGLg~~~~s------~~~q 220 (441)
+.+.+.|++|+ +.|.++.|+++||+ ..++++.|||+.... ..+||||||++..+ +..+
T Consensus 66 -------~~~~~~yg~gs-~~G~~~~D~v~ig~-~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 136 (317)
T cd05478 66 -------QPLSIQYGTGS-MTGILGYDTVQVGG-ISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDN 136 (317)
T ss_pred -------cEEEEEECCce-EEEEEeeeEEEECC-EEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHH
Confidence 37999999998 57999999999998 588899999998653 47999999987543 3333
Q ss_pred c----c--cCceeEecCCCCCCCCcCCccceeeCCCCCCCCcceeeeeecCCCCCCCCCCCceeEEeeeeEEECCEEeec
Q 042725 221 A----K--ISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDI 294 (441)
Q Consensus 221 ~----~--~~~Fs~~l~~~~~~~~~~~~g~l~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v~g~~~~~ 294 (441)
| . .+.|++||.+... ..|.|+||+.|++ +|.+.+.+.... .+.+|.|.++++.|+++.+..
T Consensus 137 L~~~g~i~~~~FS~~L~~~~~-----~~g~l~~Gg~d~~---~~~g~l~~~p~~-----~~~~w~v~l~~v~v~g~~~~~ 203 (317)
T cd05478 137 MMSQGLVSQDLFSVYLSSNGQ-----QGSVVTFGGIDPS---YYTGSLNWVPVT-----AETYWQITVDSVTINGQVVAC 203 (317)
T ss_pred HHhCCCCCCCEEEEEeCCCCC-----CCeEEEEcccCHH---HccCceEEEECC-----CCcEEEEEeeEEEECCEEEcc
Confidence 2 2 3789999986421 3789999999875 455555443322 346999999999999998753
Q ss_pred CCCccccCCCCCCcEEEccccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcccccccccceEEEEcC
Q 042725 295 PATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFER 374 (441)
Q Consensus 295 ~~~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~i~f~~~g 374 (441)
..+..+||||||+++++|++++++|.+++... ... .+.+.++|+... .+|+|+|+| +
T Consensus 204 ---------~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~----~~~---~~~~~~~C~~~~------~~P~~~f~f-~ 260 (317)
T cd05478 204 ---------SGGCQAIVDTGTSLLVGPSSDIANIQSDIGAS----QNQ---NGEMVVNCSSIS------SMPDVVFTI-N 260 (317)
T ss_pred ---------CCCCEEEECCCchhhhCCHHHHHHHHHHhCCc----ccc---CCcEEeCCcCcc------cCCcEEEEE-C
Confidence 23457999999999999999999988766322 111 234567898654 589999999 7
Q ss_pred ceEEEEcCCcEEEEeCCCeEEE-EEEecCCCCCceeeechhhhcceEEEEECCCCEEEEec
Q 042725 375 GVEILIEKERVLADVGGGVHCV-GIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAK 434 (441)
Q Consensus 375 g~~~~i~~~~y~~~~~~~~~C~-~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfA~ 434 (441)
|+.+.|||++|+.+. ...|+ +|+.... .+.||||++|||++|+|||++++|||||+
T Consensus 261 g~~~~i~~~~y~~~~--~~~C~~~~~~~~~--~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 261 GVQYPLPPSAYILQD--QGSCTSGFQSMGL--GELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred CEEEEECHHHheecC--CCEEeEEEEeCCC--CCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 999999999999875 45796 5766542 35799999999999999999999999996
No 7
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=2.4e-52 Score=402.78 Aligned_cols=289 Identities=30% Similarity=0.603 Sum_probs=230.4
Q ss_pred EEEEEEeeCCCCceEEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCCCCcE
Q 042725 83 ALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQNRLCH 162 (441)
Q Consensus 83 ~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~~ 162 (441)
+|+++|.||||||++.|+|||||+++||+|.+| |.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c---------------------------------------------~~ 35 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC---------------------------------------------CL 35 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC---------------------------------------------Ce
Confidence 488999999999999999999999999998654 26
Q ss_pred EeEEeCCCceEEeeEEEEEEeeCCCcccCCeEEEeeeCCC----CcceeEeecCCCCCccccccc---CceeEecCCCCC
Q 042725 163 YSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTS----EDKGILGMNLGRLSFASQAKI---SKFSYCVPTRVS 235 (441)
Q Consensus 163 ~~~~Yg~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~~----~~~GIlGLg~~~~s~~~q~~~---~~Fs~~l~~~~~ 235 (441)
|.+.|++|+.+.|.+++|+|+|++...++++.|||+.... ..+||||||++.++++.|+.. +.||+||.+...
T Consensus 36 ~~i~Yg~Gs~~~G~~~~D~v~ig~~~~~~~~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~~~~ 115 (299)
T cd05472 36 YQVSYGDGSYTTGDLATDTLTLGSSDVVPGFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSS 115 (299)
T ss_pred eeeEeCCCceEEEEEEEEEEEeCCCCccCCEEEECCccCCCccCCCCEEEECCCCcchHHHHhhHhhcCceEEEccCCCC
Confidence 8999999998789999999999984378899999998764 589999999999999888753 699999976431
Q ss_pred CCCcCCccceeeCCCCCC-CCcceeeeeecCCCCCCCCCCCceeEEeeeeEEECCEEeecCCCccccCCCCCCcEEEccc
Q 042725 236 RVGYTPTGSFYLGENPNS-AGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSG 314 (441)
Q Consensus 236 ~~~~~~~g~l~lG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v~g~~~~~~~~~~~~~~~~~~~~ivDTG 314 (441)
...|.|+||+.|+. +.+.|+|.+..+. .+.+|.|++++|+|+++.+..+... ..+..+|||||
T Consensus 116 ----~~~G~l~fGg~d~~~g~l~~~pv~~~~~-------~~~~y~v~l~~i~vg~~~~~~~~~~-----~~~~~~ivDSG 179 (299)
T cd05472 116 ----SSSGYLSFGAAASVPAGASFTPMLSNPR-------VPTFYYVGLTGISVGGRRLPIPPAS-----FGAGGVIIDSG 179 (299)
T ss_pred ----CCCceEEeCCccccCCCceECCCccCCC-------CCCeEEEeeEEEEECCEECCCCccc-----cCCCCeEEeCC
Confidence 14899999999874 4456666553211 2359999999999999987643211 23567999999
Q ss_pred cccccccHHHHHHHHHHHHHHhCCCcccccccCCCcc-eeccCCcccccccccceEEEEcCceEEEEcCCcEEEEe-CCC
Q 042725 315 SEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVAD-MCFDGNAMEVGRLIGDMVFEFERGVEILIEKERVLADV-GGG 392 (441)
Q Consensus 315 Ts~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~lP~i~f~~~gg~~~~i~~~~y~~~~-~~~ 392 (441)
|+++++|++++++|.+++.++....... .+.+.. .|+...+... ..+|+|+|+|.+|..+.|+|++|++.. .++
T Consensus 180 Tt~~~lp~~~~~~l~~~l~~~~~~~~~~---~~~~~~~~C~~~~~~~~-~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~ 255 (299)
T cd05472 180 TVITRLPPSAYAALRDAFRAAMAAYPRA---PGFSILDTCYDLSGFRS-VSVPTVSLHFQGGADVELDASGVLYPVDDSS 255 (299)
T ss_pred CcceecCHHHHHHHHHHHHHHhccCCCC---CCCCCCCccCcCCCCcC-CccCCEEEEECCCCEEEeCcccEEEEecCCC
Confidence 9999999999999999998765422111 112223 4987543322 259999999965899999999999843 445
Q ss_pred eEEEEEEecCCCCCceeeechhhhcceEEEEECCCCEEEEecCCC
Q 042725 393 VHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAKAEC 437 (441)
Q Consensus 393 ~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfA~~~c 437 (441)
..|+++..... ..+.||||+.|||++|+|||++++|||||+++|
T Consensus 256 ~~C~~~~~~~~-~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 256 QVCLAFAGTSD-DGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CEEEEEeCCCC-CCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 68998876542 235799999999999999999999999999999
No 8
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2.2e-52 Score=407.52 Aligned_cols=296 Identities=22% Similarity=0.337 Sum_probs=236.1
Q ss_pred cceeEEEEEEEeeCCCCceEEEEEECCCCceeEeCCCCC----CCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCCCC
Q 042725 78 FKYSMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKA----PAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPT 153 (441)
Q Consensus 78 ~~~~~~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~----~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~ 153 (441)
++++..|+++|+||||+|+++|+|||||+++||+|..|. .|..++.|||++|+||+..+
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~----------------- 65 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENG----------------- 65 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECC-----------------
Confidence 445788999999999999999999999999999977775 57889999999999999754
Q ss_pred CCCCCCCcEEeEEeCCCceEEeeEEEEEEeeCCCcccCCeEEEeeeCCC-------CcceeEeecCCCCC----------
Q 042725 154 DCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTS-------EDKGILGMNLGRLS---------- 216 (441)
Q Consensus 154 ~c~~~~~~~~~~~Yg~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~~-------~~~GIlGLg~~~~s---------- 216 (441)
|.|.+.|++|+ +.|.+++|+|++++. .+ ++.||++.... .++||||||++..+
T Consensus 66 -------~~~~~~Yg~g~-~~G~~~~D~v~~g~~-~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 135 (326)
T cd05487 66 -------TEFTIHYASGT-VKGFLSQDIVTVGGI-PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDN 135 (326)
T ss_pred -------EEEEEEeCCce-EEEEEeeeEEEECCE-Ee-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHH
Confidence 48999999997 579999999999984 55 47899987632 57999999997654
Q ss_pred cccccc--cCceeEecCCCCCCCCcCCccceeeCCCCCCCCcceeeeeecCCCCCCCCCCCceeEEeeeeEEECCEEeec
Q 042725 217 FASQAK--ISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDI 294 (441)
Q Consensus 217 ~~~q~~--~~~Fs~~l~~~~~~~~~~~~g~l~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v~g~~~~~ 294 (441)
+.+|.. .+.|++||.+..... ..|.|+||+.|++ +|.+.+.+... ..+.+|+|.+++++|+++.+..
T Consensus 136 L~~qg~i~~~~FS~~L~~~~~~~---~~G~l~fGg~d~~---~y~g~l~~~~~-----~~~~~w~v~l~~i~vg~~~~~~ 204 (326)
T cd05487 136 IMSQGVLKEDVFSVYYSRDSSHS---LGGEIVLGGSDPQ---HYQGDFHYINT-----SKTGFWQIQMKGVSVGSSTLLC 204 (326)
T ss_pred HHhcCCCCCCEEEEEEeCCCCCC---CCcEEEECCcChh---hccCceEEEEC-----CcCceEEEEecEEEECCEEEec
Confidence 344432 478999998653222 4799999999976 46665554322 2346999999999999987642
Q ss_pred CCCccccCCCCCCcEEEccccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcccccccccceEEEEcC
Q 042725 295 PATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFER 374 (441)
Q Consensus 295 ~~~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~i~f~~~g 374 (441)
..+..+||||||+++++|.++++++++++. +... .+.|.++|+... .+|+|+|+| +
T Consensus 205 ---------~~~~~aiiDSGts~~~lP~~~~~~l~~~~~----~~~~----~~~y~~~C~~~~------~~P~i~f~f-g 260 (326)
T cd05487 205 ---------EDGCTAVVDTGASFISGPTSSISKLMEALG----AKER----LGDYVVKCNEVP------TLPDISFHL-G 260 (326)
T ss_pred ---------CCCCEEEECCCccchhCcHHHHHHHHHHhC----Cccc----CCCEEEeccccC------CCCCEEEEE-C
Confidence 234579999999999999999999886663 2221 235568998754 589999999 7
Q ss_pred ceEEEEcCCcEEEEeCC--CeEEE-EEEecCC--CCCceeeechhhhcceEEEEECCCCEEEEecC
Q 042725 375 GVEILIEKERVLADVGG--GVHCV-GIGRSEM--LGLASNIFGNFHQQNLWVEFDLASRRVGFAKA 435 (441)
Q Consensus 375 g~~~~i~~~~y~~~~~~--~~~C~-~i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~riGfA~~ 435 (441)
|..+.|++++|+++... +..|+ +|+..+. ..++.||||++|||++|+|||++++|||||+|
T Consensus 261 g~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 261 GKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 99999999999987542 46795 7776432 12357999999999999999999999999986
No 9
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2.6e-52 Score=405.24 Aligned_cols=287 Identities=22% Similarity=0.308 Sum_probs=229.8
Q ss_pred ccceeEEEEEEEeeCCCCceEEEEEECCCCceeEeCCCCC---CCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCCCC
Q 042725 77 KFKYSMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKA---PAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPT 153 (441)
Q Consensus 77 ~~~~~~~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~---~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~ 153 (441)
.++.+.+|+++|+||||||+|.|+|||||+++||+|..|. .|..++.||+++|+||+..+
T Consensus 4 ~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~----------------- 66 (317)
T cd06098 4 KNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNG----------------- 66 (317)
T ss_pred cccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCC-----------------
Confidence 4455788999999999999999999999999999999995 68889999999999998743
Q ss_pred CCCCCCCcEEeEEeCCCceEEeeEEEEEEeeCCCcccCCeEEEeeeCC-------CCcceeEeecCCCCCc---------
Q 042725 154 DCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDT-------SEDKGILGMNLGRLSF--------- 217 (441)
Q Consensus 154 ~c~~~~~~~~~~~Yg~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~-------~~~~GIlGLg~~~~s~--------- 217 (441)
..+.+.|++|+. .|.++.|+|+|++ ..++++.||++... ..++||||||++..+.
T Consensus 67 -------~~~~i~Yg~G~~-~G~~~~D~v~ig~-~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 137 (317)
T cd06098 67 -------TSASIQYGTGSI-SGFFSQDSVTVGD-LVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYN 137 (317)
T ss_pred -------CEEEEEcCCceE-EEEEEeeEEEECC-EEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHH
Confidence 278999999975 6999999999998 58899999999753 2579999999986553
Q ss_pred -cccc--ccCceeEecCCCCCCCCcCCccceeeCCCCCCCCcceeeeeecCCCCCCCCCCCceeEEeeeeEEECCEEeec
Q 042725 218 -ASQA--KISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDI 294 (441)
Q Consensus 218 -~~q~--~~~~Fs~~l~~~~~~~~~~~~g~l~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v~g~~~~~ 294 (441)
.+|. ..+.|++||.+..... ..|.|+||++|++ +|.+.+.+.++. ...||.+.+++|+|+++.+..
T Consensus 138 l~~qg~i~~~~FS~~L~~~~~~~---~~G~l~fGg~d~~---~~~g~l~~~pv~-----~~~~w~v~l~~i~v~g~~~~~ 206 (317)
T cd06098 138 MVEQGLVKEPVFSFWLNRNPDEE---EGGELVFGGVDPK---HFKGEHTYVPVT-----RKGYWQFEMGDVLIGGKSTGF 206 (317)
T ss_pred HHhcCCCCCCEEEEEEecCCCCC---CCcEEEECccChh---hcccceEEEecC-----cCcEEEEEeCeEEECCEEeee
Confidence 2232 2368999997542221 4799999999876 355555443322 235999999999999987654
Q ss_pred CCCccccCCCCCCcEEEccccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcccccccccceEEEEcC
Q 042725 295 PATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFER 374 (441)
Q Consensus 295 ~~~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~i~f~~~g 374 (441)
. .....+||||||+++++|+++++++. +.++|+... .+|+|+|+| +
T Consensus 207 ~--------~~~~~aivDTGTs~~~lP~~~~~~i~-------------------~~~~C~~~~------~~P~i~f~f-~ 252 (317)
T cd06098 207 C--------AGGCAAIADSGTSLLAGPTTIVTQIN-------------------SAVDCNSLS------SMPNVSFTI-G 252 (317)
T ss_pred c--------CCCcEEEEecCCcceeCCHHHHHhhh-------------------ccCCccccc------cCCcEEEEE-C
Confidence 2 23457999999999999998776543 136898654 589999999 7
Q ss_pred ceEEEEcCCcEEEEeCC--CeEEE-EEEecCC--CCCceeeechhhhcceEEEEECCCCEEEEec
Q 042725 375 GVEILIEKERVLADVGG--GVHCV-GIGRSEM--LGLASNIFGNFHQQNLWVEFDLASRRVGFAK 434 (441)
Q Consensus 375 g~~~~i~~~~y~~~~~~--~~~C~-~i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~riGfA~ 434 (441)
|+.+.|+|++|+++... ...|+ +|+..+. ..++.||||++|||++|+|||++|+|||||+
T Consensus 253 g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 253 GKTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CEEEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 99999999999987532 35795 6765432 1235799999999999999999999999996
No 10
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=4.5e-52 Score=404.28 Aligned_cols=293 Identities=23% Similarity=0.368 Sum_probs=234.6
Q ss_pred eEEEEEEEeeCCCCceEEEEEECCCCceeEeCCCCC--CCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCC
Q 042725 81 SMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKA--PAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQN 158 (441)
Q Consensus 81 ~~~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~--~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~ 158 (441)
|.+|+++|.||||||++.|+|||||+++||+|..|. .|..++.|||++|+||+..+
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~~---------------------- 58 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTNG---------------------- 58 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceECC----------------------
Confidence 467999999999999999999999999999999987 78889999999999998743
Q ss_pred CCcEEeEEeCCCceEEeeEEEEEEeeCCCcccCCeEEEeeeCCC-------CcceeEeecCCCCC------ccccc----
Q 042725 159 RLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTS-------EDKGILGMNLGRLS------FASQA---- 221 (441)
Q Consensus 159 ~~~~~~~~Yg~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~~-------~~~GIlGLg~~~~s------~~~q~---- 221 (441)
|.|.+.|++|+. .|.++.|+++||+ ..++++.|||+.... ..+||||||++..+ +++||
T Consensus 59 --~~~~~~Yg~Gs~-~G~~~~D~i~~g~-~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g 134 (318)
T cd05477 59 --ETFSLQYGSGSL-TGIFGYDTVTVQG-IIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQN 134 (318)
T ss_pred --cEEEEEECCcEE-EEEEEeeEEEECC-EEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcC
Confidence 479999999975 6999999999998 588999999998742 46999999986543 33333
Q ss_pred --ccCceeEecCCCCCCCCcCCccceeeCCCCCCCCcceeeeeecCCCCCCCCCCCceeEEeeeeEEECCEEeecCCCcc
Q 042725 222 --KISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAF 299 (441)
Q Consensus 222 --~~~~Fs~~l~~~~~~~~~~~~g~l~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v~g~~~~~~~~~~ 299 (441)
..+.|++||.+.... ..|.|+||+.|++ +|.+.+.+.+.. ...+|.|.+++|.|+++.+...
T Consensus 135 ~i~~~~FS~~L~~~~~~----~~g~l~fGg~d~~---~~~g~l~~~pv~-----~~~~w~v~l~~i~v~g~~~~~~---- 198 (318)
T cd05477 135 LLQAPIFSFYLSGQQGQ----QGGELVFGGVDNN---LYTGQIYWTPVT-----SETYWQIGIQGFQINGQATGWC---- 198 (318)
T ss_pred CcCCCEEEEEEcCCCCC----CCCEEEEcccCHH---HcCCceEEEecC-----CceEEEEEeeEEEECCEEeccc----
Confidence 237999999864221 3799999999875 344444433222 2459999999999999876532
Q ss_pred ccCCCCCCcEEEccccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcccccccccceEEEEcCceEEE
Q 042725 300 HPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERGVEIL 379 (441)
Q Consensus 300 ~~~~~~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~i~f~~~gg~~~~ 379 (441)
..+..+||||||+++++|++++++|++.+... ... .+.+.++|+... .+|+|+|.| +|+++.
T Consensus 199 ----~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~----~~~---~~~~~~~C~~~~------~~p~l~~~f-~g~~~~ 260 (318)
T cd05477 199 ----SQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQ----QDQ---YGQYVVNCNNIQ------NLPTLTFTI-NGVSFP 260 (318)
T ss_pred ----CCCceeeECCCCccEECCHHHHHHHHHHhCCc----ccc---CCCEEEeCCccc------cCCcEEEEE-CCEEEE
Confidence 23457999999999999999999998766332 211 245568898754 589999999 799999
Q ss_pred EcCCcEEEEeCCCeEEE-EEEecCC---CCCceeeechhhhcceEEEEECCCCEEEEecC
Q 042725 380 IEKERVLADVGGGVHCV-GIGRSEM---LGLASNIFGNFHQQNLWVEFDLASRRVGFAKA 435 (441)
Q Consensus 380 i~~~~y~~~~~~~~~C~-~i~~~~~---~~~~~~iLG~~fl~~~y~vfD~~~~riGfA~~ 435 (441)
||+++|+.+. +..|+ +|.+... .+.+.||||++|||++|+|||++++|||||+|
T Consensus 261 v~~~~y~~~~--~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 261 LPPSAYILQN--NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred ECHHHeEecC--CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 9999999875 35794 7865421 12357999999999999999999999999986
No 11
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=8.8e-52 Score=403.15 Aligned_cols=292 Identities=24% Similarity=0.371 Sum_probs=226.1
Q ss_pred EEEEEEeeCCCCceEEEEEECCCCceeEeCCCCCCCC--CCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCCCC
Q 042725 83 ALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAP--PTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQNRL 160 (441)
Q Consensus 83 ~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~~~~--~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~ 160 (441)
.|+++|.||||+|++.|+|||||+++||+|..|..|. .++.|||++|+|++.++|++..|... ..| .++.
T Consensus 3 ~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~-------~~~-~~~~ 74 (326)
T cd06096 3 YYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCYC-------LSC-LNNK 74 (326)
T ss_pred eEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCcccccc-------CcC-CCCc
Confidence 6899999999999999999999999999999988554 45899999999999999999999531 234 4567
Q ss_pred cEEeEEeCCCceEEeeEEEEEEeeCCCccc-------CCeEEEeeeCCC------CcceeEeecCCCCCcc--------c
Q 042725 161 CHYSYFYADGTFAEGNLVKEKFTFSAAQST-------LPLILGCAKDTS------EDKGILGMNLGRLSFA--------S 219 (441)
Q Consensus 161 ~~~~~~Yg~g~~~~G~~~~D~v~~g~~~~~-------~~~~fg~~~~~~------~~~GIlGLg~~~~s~~--------~ 219 (441)
|.|.+.|++|+.+.|.+++|+|+|++. .. ..+.|||+.... ..+||||||+...+.. .
T Consensus 75 ~~~~i~Y~~gs~~~G~~~~D~v~lg~~-~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~ 153 (326)
T cd06096 75 CEYSISYSEGSSISGFYFSDFVSFESY-LNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFT 153 (326)
T ss_pred CcEEEEECCCCceeeEEEEEEEEeccC-CCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHH
Confidence 999999999987889999999999974 33 257899987643 5799999999764311 2
Q ss_pred ccc----cCceeEecCCCCCCCCcCCccceeeCCCCCCCCccee-----eeeecCCCCCCCCCCCceeEEeeeeEEECCE
Q 042725 220 QAK----ISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYV-----SFLTFPQSQRSPNLDPLAYSVPMQGVRIQGK 290 (441)
Q Consensus 220 q~~----~~~Fs~~l~~~~~~~~~~~~g~l~lG~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~w~v~~~~i~v~g~ 290 (441)
+.. .+.|++||.+. .|.|+||++|+.. +. +....+...+.|...+.+|.|.+++|+|+++
T Consensus 154 ~~~~~~~~~~FS~~l~~~--------~G~l~~Gg~d~~~---~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~ 222 (326)
T cd06096 154 KRPKLKKDKIFSICLSED--------GGELTIGGYDKDY---TVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGT 222 (326)
T ss_pred hcccccCCceEEEEEcCC--------CeEEEECccChhh---hcccccccccccCCceEEeccCCceEEEEEEEEEEccc
Confidence 211 27899999752 6899999998752 22 0000011111122233599999999999987
Q ss_pred EeecCCCccccCCCCCCcEEEccccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcccccccccceEE
Q 042725 291 RLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVF 370 (441)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~i~f 370 (441)
..... ...+..+||||||++++||+++++++.+++ |+|+|
T Consensus 223 ~~~~~-------~~~~~~aivDSGTs~~~lp~~~~~~l~~~~---------------------------------P~i~~ 262 (326)
T cd06096 223 TSNSG-------NTKGLGMLVDSGSTLSHFPEDLYNKINNFF---------------------------------PTITI 262 (326)
T ss_pred cccee-------cccCCCEEEeCCCCcccCCHHHHHHHHhhc---------------------------------CcEEE
Confidence 51100 134567999999999999999998877443 58999
Q ss_pred EEcCceEEEEcCCcEEEEeCCCeEEEEEEecCCCCCceeeechhhhcceEEEEECCCCEEEEecCCCC
Q 042725 371 EFERGVEILIEKERVLADVGGGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAKAECS 438 (441)
Q Consensus 371 ~~~gg~~~~i~~~~y~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfA~~~c~ 438 (441)
.|++|.++.++|++|++...+..+|+++.... +.||||++|||++|+|||++++|||||+++|-
T Consensus 263 ~f~~g~~~~i~p~~y~~~~~~~~c~~~~~~~~----~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 263 IFENNLKIDWKPSSYLYKKESFWCKGGEKSVS----NKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred EEcCCcEEEECHHHhccccCCceEEEEEecCC----CceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 99558999999999999765554456554432 46999999999999999999999999999993
No 12
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=2.5e-51 Score=400.28 Aligned_cols=298 Identities=22% Similarity=0.322 Sum_probs=235.9
Q ss_pred cccceeEEEEEEEeeCCCCceEEEEEECCCCceeEeCCCCC----CCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCC
Q 042725 76 SKFKYSMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKA----PAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTL 151 (441)
Q Consensus 76 ~~~~~~~~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~----~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~ 151 (441)
+.++.+.+|+++|+||||+|++.|+|||||+++||+|..|. .|..++.|||++|+|++..+
T Consensus 4 ~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~--------------- 68 (329)
T cd05485 4 LSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNG--------------- 68 (329)
T ss_pred ceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECC---------------
Confidence 34555789999999999999999999999999999998886 57778999999999999754
Q ss_pred CCCCCCCCCcEEeEEeCCCceEEeeEEEEEEeeCCCcccCCeEEEeeeCCC-------CcceeEeecCCCCCc-------
Q 042725 152 PTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTS-------EDKGILGMNLGRLSF------- 217 (441)
Q Consensus 152 ~~~c~~~~~~~~~~~Yg~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~~-------~~~GIlGLg~~~~s~------- 217 (441)
|.|.+.|++|+ +.|.+++|+++|++ ..++++.||++.... ..+||||||++..+.
T Consensus 69 ---------~~~~i~Y~~g~-~~G~~~~D~v~ig~-~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~ 137 (329)
T cd05485 69 ---------TEFAIQYGSGS-LSGFLSTDTVSVGG-VSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVF 137 (329)
T ss_pred ---------eEEEEEECCce-EEEEEecCcEEECC-EEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHH
Confidence 48999999997 57999999999998 578899999997542 469999999987653
Q ss_pred ---ccccc--cCceeEecCCCCCCCCcCCccceeeCCCCCCCCcceeeeeecCCCCCCCCCCCceeEEeeeeEEECCEEe
Q 042725 218 ---ASQAK--ISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRL 292 (441)
Q Consensus 218 ---~~q~~--~~~Fs~~l~~~~~~~~~~~~g~l~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v~g~~~ 292 (441)
.+|.. .+.|++||.+..... ..|.|+||+.|++ +|.+.+.+.+.. .+.+|.|.++++.++++.+
T Consensus 138 ~~l~~qg~i~~~~FS~~l~~~~~~~---~~G~l~fGg~d~~---~~~g~l~~~p~~-----~~~~~~v~~~~i~v~~~~~ 206 (329)
T cd05485 138 YNMVNQKLVDAPVFSFYLNRDPSAK---EGGELILGGSDPK---HYTGNFTYLPVT-----RKGYWQFKMDSVSVGEGEF 206 (329)
T ss_pred HHHHhCCCCCCCEEEEEecCCCCCC---CCcEEEEcccCHH---HcccceEEEEcC-----CceEEEEEeeEEEECCeee
Confidence 22332 378999997643221 4799999999875 344444433222 2459999999999999865
Q ss_pred ecCCCccccCCCCCCcEEEccccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcccccccccceEEEE
Q 042725 293 DIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEF 372 (441)
Q Consensus 293 ~~~~~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~i~f~~ 372 (441)
. ..+..+||||||+++++|+++++++.+++... .. ..+.+.++|+... .+|+|+|+|
T Consensus 207 ~----------~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~----~~---~~~~~~~~C~~~~------~~p~i~f~f 263 (329)
T cd05485 207 C----------SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK----PI---IGGEYMVNCSAIP------SLPDITFVL 263 (329)
T ss_pred c----------CCCcEEEEccCCcceeCCHHHHHHHHHHhCCc----cc---cCCcEEEeccccc------cCCcEEEEE
Confidence 3 23456999999999999999999888666432 11 1234568998654 589999999
Q ss_pred cCceEEEEcCCcEEEEeC--CCeEEE-EEEecCC--CCCceeeechhhhcceEEEEECCCCEEEEec
Q 042725 373 ERGVEILIEKERVLADVG--GGVHCV-GIGRSEM--LGLASNIFGNFHQQNLWVEFDLASRRVGFAK 434 (441)
Q Consensus 373 ~gg~~~~i~~~~y~~~~~--~~~~C~-~i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~riGfA~ 434 (441)
||+++.|+|++|+++.. +...|+ +++..+. ..++.||||++|||++|+|||++++|||||+
T Consensus 264 -gg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 264 -GGKSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred -CCEEeEEChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 79999999999998764 245896 6765321 1235799999999999999999999999995
No 13
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=2.7e-51 Score=410.20 Aligned_cols=297 Identities=22% Similarity=0.278 Sum_probs=232.6
Q ss_pred cccccccceeEEEEEEEeeCCCCceEEEEEECCCCceeEeCCCCC--CCCCCCCCCCCCCCCcccccCCCCCCCCCccCC
Q 042725 72 LRYRSKFKYSMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKA--PAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDF 149 (441)
Q Consensus 72 ~~~~~~~~~~~~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~--~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~ 149 (441)
....+.+..+.+|+++|+||||||+|.|+|||||++|||+|..|. .|..++.|||++|+||+..+
T Consensus 128 ~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~~------------- 194 (453)
T PTZ00147 128 DNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDG------------- 194 (453)
T ss_pred CeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEECC-------------
Confidence 444555666889999999999999999999999999999999997 78899999999999998854
Q ss_pred CCCCCCCCCCCcEEeEEeCCCceEEeeEEEEEEeeCCCcccCCeEEEeeeCC---------CCcceeEeecCCCCCcc--
Q 042725 150 TLPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDT---------SEDKGILGMNLGRLSFA-- 218 (441)
Q Consensus 150 ~~~~~c~~~~~~~~~~~Yg~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~---------~~~~GIlGLg~~~~s~~-- 218 (441)
+.|.+.|++|+ +.|.++.|+|+||+ ..++ ..|+++... ..+|||||||++.++..
T Consensus 195 -----------~~f~i~Yg~Gs-vsG~~~~DtVtiG~-~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~ 260 (453)
T PTZ00147 195 -----------TKVEMNYVSGT-VSGFFSKDLVTIGN-LSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSV 260 (453)
T ss_pred -----------CEEEEEeCCCC-EEEEEEEEEEEECC-EEEE-EEEEEEEeccCcccccccccccceecccCCccccccC
Confidence 37999999997 56999999999998 4666 568877542 25799999999876532
Q ss_pred --------cccc--cCceeEecCCCCCCCCcCCccceeeCCCCCCCCcceeeeeecCCCCCCCCCCCceeEEeeeeEEEC
Q 042725 219 --------SQAK--ISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQ 288 (441)
Q Consensus 219 --------~q~~--~~~Fs~~l~~~~~~~~~~~~g~l~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v~ 288 (441)
.|.. .+.||+||.+... ..|.|+||++|++ +|.+.+.+.+.. .+.||+|.++ +.++
T Consensus 261 ~p~~~~L~~qg~I~~~vFS~~L~~~~~-----~~G~L~fGGiD~~---ky~G~l~y~pl~-----~~~~W~V~l~-~~vg 326 (453)
T PTZ00147 261 DPYVVELKNQNKIEQAVFTFYLPPEDK-----HKGYLTIGGIEER---FYEGPLTYEKLN-----HDLYWQVDLD-VHFG 326 (453)
T ss_pred CCHHHHHHHcCCCCccEEEEEecCCCC-----CCeEEEECCcChh---hcCCceEEEEcC-----CCceEEEEEE-EEEC
Confidence 2322 3689999975421 4799999999976 455555554332 3459999998 5776
Q ss_pred CEEeecCCCccccCCCCCCcEEEccccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcccccccccce
Q 042725 289 GKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDM 368 (441)
Q Consensus 289 g~~~~~~~~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~i 368 (441)
+... ....+||||||+++++|+++++++++++.... . . ..+.+.++|+.. .+|+|
T Consensus 327 ~~~~------------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~-~--~---~~~~y~~~C~~~-------~lP~~ 381 (453)
T PTZ00147 327 NVSS------------EKANVIVDSGTSVITVPTEFLNKFVESLDVFK-V--P---FLPLYVTTCNNT-------KLPTL 381 (453)
T ss_pred CEec------------CceeEEECCCCchhcCCHHHHHHHHHHhCCee-c--C---CCCeEEEeCCCC-------CCCeE
Confidence 6421 24579999999999999999999887763221 1 1 123456789852 48999
Q ss_pred EEEEcCceEEEEcCCcEEEEeC--CCeEEE-EEEecCCCCCceeeechhhhcceEEEEECCCCEEEEecCC
Q 042725 369 VFEFERGVEILIEKERVLADVG--GGVHCV-GIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAKAE 436 (441)
Q Consensus 369 ~f~~~gg~~~~i~~~~y~~~~~--~~~~C~-~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfA~~~ 436 (441)
+|.| +|..++|+|++|+.... +...|+ +|+..+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 382 ~f~f-~g~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~-~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 382 EFRS-PNKVYTLEPEYYLQPIEDIGSALCMLNIIPIDL-EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEEE-CCEEEEECHHHheeccccCCCcEEEEEEEECCC-CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 9999 69999999999997532 345795 6876543 23579999999999999999999999999987
No 14
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=4.7e-51 Score=407.69 Aligned_cols=296 Identities=20% Similarity=0.261 Sum_probs=229.8
Q ss_pred ccccccceeEEEEEEEeeCCCCceEEEEEECCCCceeEeCCCCC--CCCCCCCCCCCCCCCcccccCCCCCCCCCccCCC
Q 042725 73 RYRSKFKYSMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKA--PAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFT 150 (441)
Q Consensus 73 ~~~~~~~~~~~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~--~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~ 150 (441)
...+.++.+.+|+++|+||||+|+|.|+|||||+++||+|..|. .|..++.|||++|+||+..+
T Consensus 128 ~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~~-------------- 193 (450)
T PTZ00013 128 VIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKDG-------------- 193 (450)
T ss_pred ceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccCC--------------
Confidence 34454555788999999999999999999999999999999997 78899999999999998754
Q ss_pred CCCCCCCCCCcEEeEEeCCCceEEeeEEEEEEeeCCCcccCCeEEEeeeCC---------CCcceeEeecCCCCCcc---
Q 042725 151 LPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDT---------SEDKGILGMNLGRLSFA--- 218 (441)
Q Consensus 151 ~~~~c~~~~~~~~~~~Yg~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~---------~~~~GIlGLg~~~~s~~--- 218 (441)
|.+.+.|++|+ +.|.++.|+|+||+ ..++ ..|+++... ..++||||||++.++..
T Consensus 194 ----------~~~~i~YG~Gs-v~G~~~~Dtv~iG~-~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~ 260 (450)
T PTZ00013 194 ----------TKVDITYGSGT-VKGFFSKDLVTLGH-LSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSID 260 (450)
T ss_pred ----------cEEEEEECCce-EEEEEEEEEEEECC-EEEc-cEEEEEEeccccccceecccccceecccCCccccccCC
Confidence 47999999997 57999999999998 4665 567777543 25799999999876532
Q ss_pred -------cccc--cCceeEecCCCCCCCCcCCccceeeCCCCCCCCcceeeeeecCCCCCCCCCCCceeEEeeeeEEECC
Q 042725 219 -------SQAK--ISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQG 289 (441)
Q Consensus 219 -------~q~~--~~~Fs~~l~~~~~~~~~~~~g~l~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v~g 289 (441)
.|.. .+.|++||..... ..|.|+|||+|++ +|.+.+.+.++. ...||.|.++ +.++.
T Consensus 261 p~~~~L~~qg~I~~~vFS~~L~~~~~-----~~G~L~fGGiD~~---~y~G~L~y~pv~-----~~~yW~I~l~-v~~G~ 326 (450)
T PTZ00013 261 PIVVELKNQNKIDNALFTFYLPVHDV-----HAGYLTIGGIEEK---FYEGNITYEKLN-----HDLYWQIDLD-VHFGK 326 (450)
T ss_pred CHHHHHHhccCcCCcEEEEEecCCCC-----CCCEEEECCcCcc---ccccceEEEEcC-----cCceEEEEEE-EEECc
Confidence 2322 3679999975421 4799999999976 455555554332 3459999998 66664
Q ss_pred EEeecCCCccccCCCCCCcEEEccccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcccccccccceE
Q 042725 290 KRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMV 369 (441)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~i~ 369 (441)
... .+..+||||||+++++|+++++++++.+..... . ..+.+.++|+.. .+|+|+
T Consensus 327 ~~~------------~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~---~---~~~~y~~~C~~~-------~lP~i~ 381 (450)
T PTZ00013 327 QTM------------QKANVIVDSGTTTITAPSEFLNKFFANLNVIKV---P---FLPFYVTTCDNK-------EMPTLE 381 (450)
T ss_pred eec------------cccceEECCCCccccCCHHHHHHHHHHhCCeec---C---CCCeEEeecCCC-------CCCeEE
Confidence 322 245699999999999999999988876632211 0 123456789752 489999
Q ss_pred EEEcCceEEEEcCCcEEEEe--CCCeEEE-EEEecCCCCCceeeechhhhcceEEEEECCCCEEEEecCC
Q 042725 370 FEFERGVEILIEKERVLADV--GGGVHCV-GIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAKAE 436 (441)
Q Consensus 370 f~~~gg~~~~i~~~~y~~~~--~~~~~C~-~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfA~~~ 436 (441)
|.| +|.+++|+|++|+... .++..|+ ++.+.+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 382 F~~-~g~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~-~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 382 FKS-ANNTYTLEPEYYMNPLLDVDDTLCMITMLPVDI-DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred EEE-CCEEEEECHHHheehhccCCCCeeEEEEEECCC-CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 999 6899999999999753 2345795 7766442 23579999999999999999999999999975
No 15
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=8.8e-51 Score=395.24 Aligned_cols=292 Identities=20% Similarity=0.338 Sum_probs=232.0
Q ss_pred cceeEEEEEEEeeCCCCceEEEEEECCCCceeEeCCCCC--CCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCC
Q 042725 78 FKYSMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKA--PAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDC 155 (441)
Q Consensus 78 ~~~~~~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~--~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c 155 (441)
++.+..|+++|+||||+|++.|+|||||+++||+|..|. .|..++.|++++|+||+..+
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~~~------------------- 65 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKANG------------------- 65 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceeeCC-------------------
Confidence 344678999999999999999999999999999999997 68889999999999998743
Q ss_pred CCCCCcEEeEEeCCCceEEeeEEEEEEeeCCCcccCCeEEEeeeCCC-------CcceeEeecCCCCCccc---------
Q 042725 156 DQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTS-------EDKGILGMNLGRLSFAS--------- 219 (441)
Q Consensus 156 ~~~~~~~~~~~Yg~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~~-------~~~GIlGLg~~~~s~~~--------- 219 (441)
|.+.+.|++|+ +.|.+++|+++|++ ..++++.|+|+.... ..+||||||++..+...
T Consensus 66 -----~~~~~~y~~g~-~~G~~~~D~v~ig~-~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~ 138 (320)
T cd05488 66 -----TEFKIQYGSGS-LEGFVSQDTLSIGD-LTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMI 138 (320)
T ss_pred -----CEEEEEECCce-EEEEEEEeEEEECC-EEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHH
Confidence 47999999997 57999999999998 588899999997642 46999999998765432
Q ss_pred -cc--ccCceeEecCCCCCCCCcCCccceeeCCCCCCCCcceeeeeecCCCCCCCCCCCceeEEeeeeEEECCEEeecCC
Q 042725 220 -QA--KISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPA 296 (441)
Q Consensus 220 -q~--~~~~Fs~~l~~~~~~~~~~~~g~l~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v~g~~~~~~~ 296 (441)
|. ..+.|++||.+... ..|.|+||++|+. +|.+.+.+.+.. ...+|.|.+++|+||++.+..+
T Consensus 139 ~qg~i~~~~FS~~L~~~~~-----~~G~l~fGg~d~~---~~~g~l~~~p~~-----~~~~w~v~l~~i~vg~~~~~~~- 204 (320)
T cd05488 139 NQGLLDEPVFSFYLGSSEE-----DGGEATFGGIDES---RFTGKITWLPVR-----RKAYWEVELEKIGLGDEELELE- 204 (320)
T ss_pred hcCCCCCCEEEEEecCCCC-----CCcEEEECCcCHH---HcCCceEEEeCC-----cCcEEEEEeCeEEECCEEeccC-
Confidence 22 23789999987531 4799999999875 344444433221 2359999999999999877532
Q ss_pred CccccCCCCCCcEEEccccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcccccccccceEEEEcCce
Q 042725 297 TAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERGV 376 (441)
Q Consensus 297 ~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~i~f~~~gg~ 376 (441)
+..++|||||+++++|+++++++.+.+ ++... ..+.+.++|+... .+|.|+|.| +|+
T Consensus 205 ---------~~~~ivDSGtt~~~lp~~~~~~l~~~~----~~~~~---~~~~~~~~C~~~~------~~P~i~f~f-~g~ 261 (320)
T cd05488 205 ---------NTGAAIDTGTSLIALPSDLAEMLNAEI----GAKKS---WNGQYTVDCSKVD------SLPDLTFNF-DGY 261 (320)
T ss_pred ---------CCeEEEcCCcccccCCHHHHHHHHHHh----CCccc---cCCcEEeeccccc------cCCCEEEEE-CCE
Confidence 346999999999999999999887665 32211 1234567897654 589999999 799
Q ss_pred EEEEcCCcEEEEeCCCeEEE-EEEecCC--CCCceeeechhhhcceEEEEECCCCEEEEec
Q 042725 377 EILIEKERVLADVGGGVHCV-GIGRSEM--LGLASNIFGNFHQQNLWVEFDLASRRVGFAK 434 (441)
Q Consensus 377 ~~~i~~~~y~~~~~~~~~C~-~i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~riGfA~ 434 (441)
++.|||++|+++.. ..|+ .+...+. ..++.||||++|||++|+|||++++|||||+
T Consensus 262 ~~~i~~~~y~~~~~--g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 262 NFTLGPFDYTLEVS--GSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred EEEECHHHheecCC--CeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 99999999998643 4696 4554321 1134799999999999999999999999996
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=6.4e-50 Score=395.90 Aligned_cols=314 Identities=21% Similarity=0.318 Sum_probs=228.2
Q ss_pred EEEEEEEeeCCCCceEEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCCCCc
Q 042725 82 MALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQNRLC 161 (441)
Q Consensus 82 ~~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~ 161 (441)
..|+++|.||||+|+|.|+|||||+++||+|..| |..++.|||++|+||+..+ |
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~--~~~~~~f~~~~SsT~~~~~------------------------~ 55 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPH--PFIHTYFHRELSSTYRDLG------------------------K 55 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCC--ccccccCCchhCcCcccCC------------------------c
Confidence 3689999999999999999999999999999887 6678899999999999865 4
Q ss_pred EEeEEeCCCceEEeeEEEEEEeeCCCcccC-CeEEEeeeCCC-------CcceeEeecCCCCC------------ccccc
Q 042725 162 HYSYFYADGTFAEGNLVKEKFTFSAAQSTL-PLILGCAKDTS-------EDKGILGMNLGRLS------------FASQA 221 (441)
Q Consensus 162 ~~~~~Yg~g~~~~G~~~~D~v~~g~~~~~~-~~~fg~~~~~~-------~~~GIlGLg~~~~s------------~~~q~ 221 (441)
.|.+.|++|+. .|.+++|+|+|++..... .+.|++..... .++||||||++.++ +.+|.
T Consensus 56 ~~~i~Yg~Gs~-~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~ 134 (364)
T cd05473 56 GVTVPYTQGSW-EGELGTDLVSIPKGPNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQT 134 (364)
T ss_pred eEEEEECcceE-EEEEEEEEEEECCCCccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhcc
Confidence 79999999975 699999999998621111 12345544322 46999999998763 34454
Q ss_pred cc-CceeEecCCCCCC----CCcCCccceeeCCCCCCCCcceeeeeecCCCCCCCCCCCceeEEeeeeEEECCEEeecCC
Q 042725 222 KI-SKFSYCVPTRVSR----VGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPA 296 (441)
Q Consensus 222 ~~-~~Fs~~l~~~~~~----~~~~~~g~l~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v~g~~~~~~~ 296 (441)
.+ +.|+++|...... ......|.|+||++|++ +|.+.+.+.+.. ...+|.|.+++|+|+++.+..+.
T Consensus 135 ~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~---~~~g~l~~~p~~-----~~~~~~v~l~~i~vg~~~~~~~~ 206 (364)
T cd05473 135 GIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPS---LYKGDIWYTPIR-----EEWYYEVIILKLEVGGQSLNLDC 206 (364)
T ss_pred CCccceEEEecccccccccccccCCCcEEEeCCcCHh---hcCCCceEEecC-----cceeEEEEEEEEEECCEeccccc
Confidence 44 4799977432110 01124799999999875 344444433222 23599999999999999876543
Q ss_pred CccccCCCCCCcEEEccccccccccHHHHHHHHHHHHHHhCCCc-ccccccCCCcceeccCCcccccccccceEEEEcCc
Q 042725 297 TAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRM-KKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERG 375 (441)
Q Consensus 297 ~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~-~~~~~~~~~~~~C~~~~~~~~~~~lP~i~f~~~gg 375 (441)
..+ ....+||||||+++++|+++++++++++.++..... ...+ .+.+.++|+....... ..+|+|+|.|.|+
T Consensus 207 ~~~-----~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~C~~~~~~~~-~~~P~i~~~f~g~ 279 (364)
T cd05473 207 KEY-----NYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGF-WLGSQLACWQKGTTPW-EIFPKISIYLRDE 279 (364)
T ss_pred ccc-----cCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccc-cCcceeecccccCchH-hhCCcEEEEEccC
Confidence 221 124699999999999999999999999987653211 1111 1123468986442211 2489999999642
Q ss_pred -----eEEEEcCCcEEEEeC---CCeEEEEEEecCCCCCceeeechhhhcceEEEEECCCCEEEEecCCCCc
Q 042725 376 -----VEILIEKERVLADVG---GGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAKAECSR 439 (441)
Q Consensus 376 -----~~~~i~~~~y~~~~~---~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfA~~~c~~ 439 (441)
..+.|+|++|+.... .+..|+++..... .+.||||++|||++|+|||++++|||||+++|.+
T Consensus 280 ~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~--~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~ 349 (364)
T cd05473 280 NSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQS--TNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAE 349 (364)
T ss_pred CCCceEEEEECHHHhhhhhccCCCcceeeEEeeecC--CCceEEeeeeEcceEEEEECCCCEEeeEeccccc
Confidence 478999999997542 2457975432221 2469999999999999999999999999999976
No 17
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1.1e-49 Score=377.40 Aligned_cols=255 Identities=40% Similarity=0.755 Sum_probs=213.9
Q ss_pred EEEEEEeeCCCCceEEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCCCCcE
Q 042725 83 ALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQNRLCH 162 (441)
Q Consensus 83 ~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~~ 162 (441)
+|+++|+||||||++.|+|||||+++||+| | .
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~--~----------------------------------------------~ 32 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC--C----------------------------------------------S 32 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--C----------------------------------------------c
Confidence 488999999999999999999999999987 3 4
Q ss_pred EeEEeCCCceEEeeEEEEEEeeCCCc-ccCCeEEEeeeCCC-----CcceeEeecCCCCCcccccccC--ceeEecCCCC
Q 042725 163 YSYFYADGTFAEGNLVKEKFTFSAAQ-STLPLILGCAKDTS-----EDKGILGMNLGRLSFASQAKIS--KFSYCVPTRV 234 (441)
Q Consensus 163 ~~~~Yg~g~~~~G~~~~D~v~~g~~~-~~~~~~fg~~~~~~-----~~~GIlGLg~~~~s~~~q~~~~--~Fs~~l~~~~ 234 (441)
|.+.|++|+.+.|.+++|++.|++.. .++++.|||+.... ..+||||||+...++..|+... .|++||.+..
T Consensus 33 ~~~~Y~dg~~~~G~~~~D~v~~g~~~~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~Fs~~l~~~~ 112 (265)
T cd05476 33 YEYSYGDGSSTSGVLATETFTFGDSSVSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTGNKFSYCLVPHD 112 (265)
T ss_pred eEeEeCCCceeeeeEEEEEEEecCCCCccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhcccCeeEEEccCCC
Confidence 88899998888999999999999842 78899999998763 6899999999999999998765 9999998743
Q ss_pred CCCCcCCccceeeCCCCCC--CCcceeeeeecCCCCCCCCCCCceeEEeeeeEEECCEEeecCCCccccCCCCCCcEEEc
Q 042725 235 SRVGYTPTGSFYLGENPNS--AGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVD 312 (441)
Q Consensus 235 ~~~~~~~~g~l~lG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v~g~~~~~~~~~~~~~~~~~~~~ivD 312 (441)
... ..|.|+||+.|+. +.+.|+|.+..+ ....+|.+++++|+|+++.+.++...+...+.....+|||
T Consensus 113 ~~~---~~G~l~fGg~d~~~~~~l~~~p~~~~~-------~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~D 182 (265)
T cd05476 113 DTG---GSSPLILGDAADLGGSGVVYTPLVKNP-------ANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIID 182 (265)
T ss_pred CCC---CCCeEEECCcccccCCCceEeecccCC-------CCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEe
Confidence 222 4899999999974 445566654321 1245999999999999998875544333334567789999
Q ss_pred cccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcccccccccceEEEEcCceEEEEcCCcEEEEeCCC
Q 042725 313 SGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERGVEILIEKERVLADVGGG 392 (441)
Q Consensus 313 TGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~i~f~~~gg~~~~i~~~~y~~~~~~~ 392 (441)
|||+++++|++++ |+|+|+|.+|.+|.+++++|++....+
T Consensus 183 TGTs~~~lp~~~~----------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~~~ 222 (265)
T cd05476 183 SGTTLTYLPDPAY----------------------------------------PDLTLHFDGGADLELPPENYFVDVGEG 222 (265)
T ss_pred CCCcceEcCcccc----------------------------------------CCEEEEECCCCEEEeCcccEEEECCCC
Confidence 9999999998866 589999955899999999999976666
Q ss_pred eEEEEEEecCCCCCceeeechhhhcceEEEEECCCCEEEEecCCC
Q 042725 393 VHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAKAEC 437 (441)
Q Consensus 393 ~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfA~~~c 437 (441)
..|+++.... ..+.||||++|||++|++||.+++|||||+++|
T Consensus 223 ~~C~~~~~~~--~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 223 VVCLAILSSS--SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CEEEEEecCC--CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 7899887653 245799999999999999999999999999999
No 18
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.6e-48 Score=383.15 Aligned_cols=319 Identities=21% Similarity=0.414 Sum_probs=246.8
Q ss_pred eCCCCce-EEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCCC--------CCCCCCCC
Q 042725 90 IGTPPQT-QEMVLDTGSQLSWIKCHKKAPAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLP--------TDCDQNRL 160 (441)
Q Consensus 90 iGtP~Q~-~~v~~DTGSs~lWV~c~~~~~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~--------~~c~~~~~ 160 (441)
+|||-.+ |.|++||||+++||+|.++ +|+||..++|.++.|....+. .++ ..| .++.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~------------~sst~~~~~C~s~~C~~~~~~-~~~~~~~~~~~~~c-~~~~ 67 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAG------------HSSTYQTVPCSSSVCSLANRY-HCPGTCGGAPGPGC-GNNT 67 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCC------------CcCCCCccCcCChhhcccccc-CCCccccCCCCCCC-CCCc
Confidence 5788888 9999999999999999764 588999999999999865432 111 245 3345
Q ss_pred cEEeEE-eCCCceEEeeEEEEEEeeCCC-------cccCCeEEEeeeCCC------CcceeEeecCCCCCccccccc---
Q 042725 161 CHYSYF-YADGTFAEGNLVKEKFTFSAA-------QSTLPLILGCAKDTS------EDKGILGMNLGRLSFASQAKI--- 223 (441)
Q Consensus 161 ~~~~~~-Yg~g~~~~G~~~~D~v~~g~~-------~~~~~~~fg~~~~~~------~~~GIlGLg~~~~s~~~q~~~--- 223 (441)
|.|... |++|+.+.|.+++|+++|+.. ..++++.|||+.... .+|||||||++.+|++.|+..
T Consensus 68 C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~ 147 (362)
T cd05489 68 CTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFG 147 (362)
T ss_pred CeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcC
Confidence 888654 779988899999999999742 257899999997642 479999999999999998854
Q ss_pred --CceeEecCCCCCCCCcCCccceeeCCCCCC---------CCcceeeeeecCCCCCCCCCCCceeEEeeeeEEECCEEe
Q 042725 224 --SKFSYCVPTRVSRVGYTPTGSFYLGENPNS---------AGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRL 292 (441)
Q Consensus 224 --~~Fs~~l~~~~~~~~~~~~g~l~lG~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v~g~~~ 292 (441)
++|++||.... . ..|.|+||+.+.. ..+.|+|++..+. .+.||.|+|++|+||++.+
T Consensus 148 ~~~~FS~CL~~~~--~---~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~-------~~~~Y~v~l~~IsVg~~~l 215 (362)
T cd05489 148 VARKFALCLPSSP--G---GPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPR-------KSGEYYIGVTSIAVNGHAV 215 (362)
T ss_pred CCcceEEEeCCCC--C---CCeeEEECCCchhcccccccccCCccccccccCCC-------CCCceEEEEEEEEECCEEC
Confidence 78999998642 1 3799999997742 3456666653221 2359999999999999998
Q ss_pred ecCCCccccCCCCCCcEEEccccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcc---cccccccceE
Q 042725 293 DIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAM---EVGRLIGDMV 369 (441)
Q Consensus 293 ~~~~~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~---~~~~~lP~i~ 369 (441)
.++...+.....++..+||||||++++||+++|++|.+++.+++....... ........|+..... .....+|+|+
T Consensus 216 ~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~-~~~~~~~~C~~~~~~~~~~~~~~~P~it 294 (362)
T cd05489 216 PLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVP-AAAVFPELCYPASALGNTRLGYAVPAID 294 (362)
T ss_pred CCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCC-CCCCCcCccccCCCcCCcccccccceEE
Confidence 876666555555667899999999999999999999999987765321110 001112578874321 1123699999
Q ss_pred EEEcC-ceEEEEcCCcEEEEeCCCeEEEEEEecCCCCCceeeechhhhcceEEEEECCCCEEEEecC
Q 042725 370 FEFER-GVEILIEKERVLADVGGGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAKA 435 (441)
Q Consensus 370 f~~~g-g~~~~i~~~~y~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfA~~ 435 (441)
|+|.| |..|.|+|++|+++..++..|++|...+....+.||||+.|||++|++||++++|||||+.
T Consensus 295 ~~f~g~g~~~~l~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 295 LVLDGGGVNWTIFGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEEeCCCeEEEEcCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 99975 6999999999999877677899998765432457999999999999999999999999974
No 19
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.4e-47 Score=365.61 Aligned_cols=256 Identities=22% Similarity=0.362 Sum_probs=203.9
Q ss_pred EEEEEeeCCCCceEEEEEECCCCceeEeCCCCC--CCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCCCCc
Q 042725 84 LVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKA--PAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQNRLC 161 (441)
Q Consensus 84 y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~--~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~ 161 (441)
|+++|+||||||++.|+|||||+++||+|..|. .|..+..||+++|+|++... .|
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~-----------------------~~ 57 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLP-----------------------GA 57 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecC-----------------------Cc
Confidence 679999999999999999999999999999887 45567889999999998642 24
Q ss_pred EEeEEeCCCceEEeeEEEEEEeeCCCcccCCeEEEeeeCCC-------CcceeEeecCCCCCccc-------------cc
Q 042725 162 HYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTS-------EDKGILGMNLGRLSFAS-------------QA 221 (441)
Q Consensus 162 ~~~~~Yg~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~~-------~~~GIlGLg~~~~s~~~-------------q~ 221 (441)
.+.+.|++|+.+.|.++.|+|.|++ ..++++.||+++... .++||||||++..+... |+
T Consensus 58 ~~~i~Y~~G~~~~G~~~~D~v~ig~-~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~ 136 (278)
T cd06097 58 TWSISYGDGSSASGIVYTDTVSIGG-VEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSL 136 (278)
T ss_pred EEEEEeCCCCeEEEEEEEEEEEECC-EEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhc
Confidence 8999999998778999999999998 578899999998742 68999999998665322 22
Q ss_pred ccCceeEecCCCCCCCCcCCccceeeCCCCCCCCcceeeeeecCCCCCCCCCCCceeEEeeeeEEECCEEeecCCCcccc
Q 042725 222 KISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHP 301 (441)
Q Consensus 222 ~~~~Fs~~l~~~~~~~~~~~~g~l~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v~g~~~~~~~~~~~~ 301 (441)
..+.|+++|.+. ..|.|+||++|++ +|.+.+.+.+... ...+|.|.+++|.|+++....
T Consensus 137 ~~~~Fs~~l~~~-------~~G~l~fGg~D~~---~~~g~l~~~pi~~----~~~~w~v~l~~i~v~~~~~~~------- 195 (278)
T cd06097 137 DAPLFTADLRKA-------APGFYTFGYIDES---KYKGEISWTPVDN----SSGFWQFTSTSYTVGGDAPWS------- 195 (278)
T ss_pred cCceEEEEecCC-------CCcEEEEeccChH---HcCCceEEEEccC----CCcEEEEEEeeEEECCcceee-------
Confidence 236899999751 3799999999975 3445444433221 135999999999999874321
Q ss_pred CCCCCCcEEEccccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcccccccccceEEEEcCceEEEEc
Q 042725 302 DASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERGVEILIE 381 (441)
Q Consensus 302 ~~~~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~i~f~~~gg~~~~i~ 381 (441)
..+..++|||||+++++|.++++++.+++.+ +.... ..+.+.++|.. .+|+|+|.|
T Consensus 196 --~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g---~~~~~--~~~~~~~~C~~--------~~P~i~f~~--------- 251 (278)
T cd06097 196 --RSGFSAIADTGTTLILLPDAIVEAYYSQVPG---AYYDS--EYGGWVFPCDT--------TLPDLSFAV--------- 251 (278)
T ss_pred --cCCceEEeecCCchhcCCHHHHHHHHHhCcC---CcccC--CCCEEEEECCC--------CCCCEEEEE---------
Confidence 2456799999999999999999998877632 21111 12445688875 278999988
Q ss_pred CCcEEEEeCCCeEEEEEEecCCCCCceeeechhhhcceEEEEECCCCEEEEec
Q 042725 382 KERVLADVGGGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAK 434 (441)
Q Consensus 382 ~~~y~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfA~ 434 (441)
.||||++|||++|+|||++|+|||||+
T Consensus 252 --------------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 --------------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred --------------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 499999999999999999999999996
No 20
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=9.2e-47 Score=358.72 Aligned_cols=250 Identities=27% Similarity=0.514 Sum_probs=199.8
Q ss_pred EEEEEEeeCCCCceEEEEEECCCCceeEeCC-CCCCCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCCCCc
Q 042725 83 ALVVSLPIGTPPQTQEMVLDTGSQLSWIKCH-KKAPAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQNRLC 161 (441)
Q Consensus 83 ~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~-~~~~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~ 161 (441)
+|+++|.||||||++.|+|||||+++||+|. .|..| .|
T Consensus 2 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c-----------------------------------------~c 40 (273)
T cd05475 2 YYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC-----------------------------------------QC 40 (273)
T ss_pred ceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-----------------------------------------cC
Confidence 5889999999999999999999999999984 45322 14
Q ss_pred EEeEEeCCCceEEeeEEEEEEeeCCC---cccCCeEEEeeeCC--------CCcceeEeecCCCCCccccccc-----Cc
Q 042725 162 HYSYFYADGTFAEGNLVKEKFTFSAA---QSTLPLILGCAKDT--------SEDKGILGMNLGRLSFASQAKI-----SK 225 (441)
Q Consensus 162 ~~~~~Yg~g~~~~G~~~~D~v~~g~~---~~~~~~~fg~~~~~--------~~~~GIlGLg~~~~s~~~q~~~-----~~ 225 (441)
.|.+.|++|+.+.|.+++|+|+|+.. ..++++.|||+... ...+||||||++..++++|+.. +.
T Consensus 41 ~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~ 120 (273)
T cd05475 41 DYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNV 120 (273)
T ss_pred ccEeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCce
Confidence 79999998878889999999999642 36678999999653 2579999999999999888753 57
Q ss_pred eeEecCCCCCCCCcCCccceeeCCCCC-CCCcceeeeeecCCCCCCCCCCCceeEEeeeeEEECCEEeecCCCccccCCC
Q 042725 226 FSYCVPTRVSRVGYTPTGSFYLGENPN-SAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAFHPDAS 304 (441)
Q Consensus 226 Fs~~l~~~~~~~~~~~~g~l~lG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v~g~~~~~~~~~~~~~~~ 304 (441)
|++||.+. ..|.|+||+... .+.++|+|....+ ...+|.|++++|+|+++... .
T Consensus 121 Fs~~l~~~-------~~g~l~~G~~~~~~g~i~ytpl~~~~--------~~~~y~v~l~~i~vg~~~~~----------~ 175 (273)
T cd05475 121 IGHCLSSN-------GGGFLFFGDDLVPSSGVTWTPMRRES--------QKKHYSPGPASLLFNGQPTG----------G 175 (273)
T ss_pred EEEEccCC-------CCeEEEECCCCCCCCCeeecccccCC--------CCCeEEEeEeEEEECCEECc----------C
Confidence 99999752 368899985322 1335555544221 13599999999999998542 2
Q ss_pred CCCcEEEccccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcccccccccceEEEEcCc---eEEEEc
Q 042725 305 GSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERG---VEILIE 381 (441)
Q Consensus 305 ~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~i~f~~~gg---~~~~i~ 381 (441)
.+..+||||||+++++|+++| +|+|+|.|.++ ++++|+
T Consensus 176 ~~~~~ivDTGTt~t~lp~~~y---------------------------------------~p~i~~~f~~~~~~~~~~l~ 216 (273)
T cd05475 176 KGLEVVFDSGSSYTYFNAQAY---------------------------------------FKPLTLKFGKGWRTRLLEIP 216 (273)
T ss_pred CCceEEEECCCceEEcCCccc---------------------------------------cccEEEEECCCCceeEEEeC
Confidence 356799999999999998755 46899999533 799999
Q ss_pred CCcEEEEeCCCeEEEEEEecCCC-CCceeeechhhhcceEEEEECCCCEEEEecCCC
Q 042725 382 KERVLADVGGGVHCVGIGRSEML-GLASNIFGNFHQQNLWVEFDLASRRVGFAKAEC 437 (441)
Q Consensus 382 ~~~y~~~~~~~~~C~~i~~~~~~-~~~~~iLG~~fl~~~y~vfD~~~~riGfA~~~c 437 (441)
|++|++....+..|+++...... ..+.||||+.|||++|+|||++++|||||+++|
T Consensus 217 ~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 217 PENYLIISEKGNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred CCceEEEcCCCCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 99999876566689987755432 235799999999999999999999999999999
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=8.9e-46 Score=356.62 Aligned_cols=271 Identities=25% Similarity=0.401 Sum_probs=215.1
Q ss_pred EEEEEEeeCCCCceEEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCCCCcE
Q 042725 83 ALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQNRLCH 162 (441)
Q Consensus 83 ~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~~ 162 (441)
.|+++|.||||+|++.|+|||||+++||+ .
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------~ 31 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------D 31 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee--------------------------------------------------e
Confidence 58899999999999999999999999997 2
Q ss_pred EeEEeCCCceEEeeEEEEEEeeCCCcccCCeEEEeeeCCCCcceeEeecCCCC-----------Ccccccc------cCc
Q 042725 163 YSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTSEDKGILGMNLGRL-----------SFASQAK------ISK 225 (441)
Q Consensus 163 ~~~~Yg~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~~~~~GIlGLg~~~~-----------s~~~q~~------~~~ 225 (441)
|.+.|++|+.+.|.+++|+++|++ ..++++.|||+......+||||||++.. ++..|+. .+.
T Consensus 32 ~~~~Y~~g~~~~G~~~~D~v~~g~-~~~~~~~fg~~~~~~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~ 110 (295)
T cd05474 32 FSISYGDGTSASGTWGTDTVSIGG-ATVKNLQFAVANSTSSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNA 110 (295)
T ss_pred eEEEeccCCcEEEEEEEEEEEECC-eEecceEEEEEecCCCCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceE
Confidence 788999977778999999999998 4788999999999888999999999775 4545442 367
Q ss_pred eeEecCCCCCCCCcCCccceeeCCCCCCCCcceeeeeecCCCCCCCC-CCCceeEEeeeeEEECCEEeecCCCccccCCC
Q 042725 226 FSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPN-LDPLAYSVPMQGVRIQGKRLDIPATAFHPDAS 304 (441)
Q Consensus 226 Fs~~l~~~~~~~~~~~~g~l~lG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w~v~~~~i~v~g~~~~~~~~~~~~~~~ 304 (441)
|++||.+... ..|.|+||++|+. +|.+.+.+.+....+. ..+.+|.|.+++|+++++.+..+. ..
T Consensus 111 Fsl~l~~~~~-----~~g~l~~Gg~d~~---~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~------~~ 176 (295)
T cd05474 111 YSLYLNDLDA-----STGSILFGGVDTA---KYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTL------LS 176 (295)
T ss_pred EEEEeCCCCC-----CceeEEEeeeccc---eeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccc------cC
Confidence 9999976421 4799999998875 3444443322221110 123699999999999998764311 13
Q ss_pred CCCcEEEccccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcccccccccceEEEEcCceEEEEcCCc
Q 042725 305 GSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERGVEILIEKER 384 (441)
Q Consensus 305 ~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~i~f~~~gg~~~~i~~~~ 384 (441)
....++|||||+++++|.+++++|++++.+..... .+.+..+|+... . |+|+|.| +|.++.||+++
T Consensus 177 ~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~------~~~~~~~C~~~~------~-p~i~f~f-~g~~~~i~~~~ 242 (295)
T cd05474 177 KNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDSD------EGLYVVDCDAKD------D-GSLTFNF-GGATISVPLSD 242 (295)
T ss_pred CCccEEECCCCccEeCCHHHHHHHHHHhCCEEcCC------CcEEEEeCCCCC------C-CEEEEEE-CCeEEEEEHHH
Confidence 46679999999999999999999998775443221 234568998754 3 8999999 68999999999
Q ss_pred EEEEeC----CCeEE-EEEEecCCCCCceeeechhhhcceEEEEECCCCEEEEecC
Q 042725 385 VLADVG----GGVHC-VGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAKA 435 (441)
Q Consensus 385 y~~~~~----~~~~C-~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfA~~ 435 (441)
|+++.. .+..| ++|.+.+. +.||||++|||++|++||.+++|||||+|
T Consensus 243 ~~~~~~~~~~~~~~C~~~i~~~~~---~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 243 LVLPASTDDGGDGACYLGIQPSTS---DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred hEeccccCCCCCCCeEEEEEeCCC---CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 998764 25678 68877653 47999999999999999999999999986
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=3.6e-46 Score=362.94 Aligned_cols=290 Identities=27% Similarity=0.447 Sum_probs=231.7
Q ss_pred EEEEEEeeCCCCceEEEEEECCCCceeEeCCCCC---CCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCCC
Q 042725 83 ALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKA---PAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQNR 159 (441)
Q Consensus 83 ~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~---~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~ 159 (441)
+|+++|+||||+|+++|++||||+++||++..|. .|..+..|++++|+|++..+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~----------------------- 57 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQG----------------------- 57 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEE-----------------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccce-----------------------
Confidence 5899999999999999999999999999988776 35788999999999999854
Q ss_pred CcEEeEEeCCCceEEeeEEEEEEeeCCCcccCCeEEEeeeCC-------CCcceeEeecCCCC-------Cccccc----
Q 042725 160 LCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDT-------SEDKGILGMNLGRL-------SFASQA---- 221 (441)
Q Consensus 160 ~~~~~~~Yg~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~-------~~~~GIlGLg~~~~-------s~~~q~---- 221 (441)
+.+.+.|++|+ +.|.++.|+++|++ ..+.++.||++... ..++||||||++.. ++..++
T Consensus 58 -~~~~~~y~~g~-~~G~~~~D~v~ig~-~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g 134 (317)
T PF00026_consen 58 -KPFSISYGDGS-VSGNLVSDTVSIGG-LTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQG 134 (317)
T ss_dssp -EEEEEEETTEE-EEEEEEEEEEEETT-EEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTT
T ss_pred -eeeeeeccCcc-cccccccceEeeee-ccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhc
Confidence 37999999998 78999999999999 58888999999883 36899999997543 333333
Q ss_pred --ccCceeEecCCCCCCCCcCCccceeeCCCCCCCCcceeeeeecCCCCCCCCCCCceeEEeeeeEEECCEEeecCCCcc
Q 042725 222 --KISKFSYCVPTRVSRVGYTPTGSFYLGENPNSAGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATAF 299 (441)
Q Consensus 222 --~~~~Fs~~l~~~~~~~~~~~~g~l~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v~g~~~~~~~~~~ 299 (441)
..+.|++++.+.. ...|.|+||+.|++ +|.+.+.+.... ...+|.+.+++|.++++....
T Consensus 135 ~i~~~~fsl~l~~~~-----~~~g~l~~Gg~d~~---~~~g~~~~~~~~-----~~~~w~v~~~~i~i~~~~~~~----- 196 (317)
T PF00026_consen 135 LISSNVFSLYLNPSD-----SQNGSLTFGGYDPS---KYDGDLVWVPLV-----SSGYWSVPLDSISIGGESVFS----- 196 (317)
T ss_dssp SSSSSEEEEEEESTT-----SSEEEEEESSEEGG---GEESEEEEEEBS-----STTTTEEEEEEEEETTEEEEE-----
T ss_pred cccccccceeeeecc-----cccchheeeccccc---cccCceeccCcc-----ccccccccccccccccccccc-----
Confidence 2378999998764 25899999999876 466665544333 345999999999999983221
Q ss_pred ccCCCCCCcEEEccccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcccccccccceEEEEcCceEEE
Q 042725 300 HPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERGVEIL 379 (441)
Q Consensus 300 ~~~~~~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~i~f~~~gg~~~~ 379 (441)
.....++||||++++++|.+++++|++.+...... +.+.++|.... .+|.|+|.| ++.++.
T Consensus 197 ----~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~--------~~~~~~c~~~~------~~p~l~f~~-~~~~~~ 257 (317)
T PF00026_consen 197 ----SSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD--------GVYSVPCNSTD------SLPDLTFTF-GGVTFT 257 (317)
T ss_dssp ----EEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC--------SEEEEETTGGG------GSEEEEEEE-TTEEEE
T ss_pred ----ccceeeecccccccccccchhhHHHHhhhcccccc--------eeEEEeccccc------ccceEEEee-CCEEEE
Confidence 22345999999999999999999998777544322 34567887654 589999999 699999
Q ss_pred EcCCcEEEEeCCC--eEE-EEEEecCC-CCCceeeechhhhcceEEEEECCCCEEEEecC
Q 042725 380 IEKERVLADVGGG--VHC-VGIGRSEM-LGLASNIFGNFHQQNLWVEFDLASRRVGFAKA 435 (441)
Q Consensus 380 i~~~~y~~~~~~~--~~C-~~i~~~~~-~~~~~~iLG~~fl~~~y~vfD~~~~riGfA~~ 435 (441)
|+|++|+.+.... ..| ++|...+. ...+.||||.+|||++|++||.+++|||||+|
T Consensus 258 i~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 258 IPPSDYIFKIEDGNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEHHHHEEEESSTTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ecchHhcccccccccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 9999999987543 379 46766332 23467999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=8.1e-41 Score=319.89 Aligned_cols=258 Identities=29% Similarity=0.513 Sum_probs=202.1
Q ss_pred EEEEEeeCCCCceEEEEEECCCCceeEeCCCCCC--CCCCCC--CCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCCC
Q 042725 84 LVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAP--APPTTS--FDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQNR 159 (441)
Q Consensus 84 y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~~--~~~~~~--y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~ 159 (441)
|+++|.||||+|++.|+|||||+++||+|..|.. |..... |++..|+++...
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~------------------------ 56 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDT------------------------ 56 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeecC------------------------
Confidence 6799999999999999999999999999999872 333333 677777776652
Q ss_pred CcEEeEEeCCCceEEeeEEEEEEeeCCCcccCCeEEEeeeCCC------CcceeEeecCCC------CCcccccc-----
Q 042725 160 LCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTS------EDKGILGMNLGR------LSFASQAK----- 222 (441)
Q Consensus 160 ~~~~~~~Yg~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~~------~~~GIlGLg~~~------~s~~~q~~----- 222 (441)
.|.+.+.|++|+. .|.++.|+++|++. .++++.|||+.... ..+||||||+.. .+++.|+.
T Consensus 57 ~~~~~~~Y~~g~~-~g~~~~D~v~~~~~-~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i 134 (283)
T cd05471 57 GCTFSITYGDGSV-TGGLGTDTVTIGGL-TIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLI 134 (283)
T ss_pred CCEEEEEECCCeE-EEEEEEeEEEECCE-EEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCC
Confidence 3589999999964 69999999999984 68899999999753 689999999987 56766653
Q ss_pred -cCceeEecCCCCCCCCcCCccceeeCCCCCC---CCcceeeeeecCCCCCCCCCCCceeEEeeeeEEECCEEeecCCCc
Q 042725 223 -ISKFSYCVPTRVSRVGYTPTGSFYLGENPNS---AGFRYVSFLTFPQSQRSPNLDPLAYSVPMQGVRIQGKRLDIPATA 298 (441)
Q Consensus 223 -~~~Fs~~l~~~~~~~~~~~~g~l~lG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~w~v~~~~i~v~g~~~~~~~~~ 298 (441)
.+.|++||.+... ....|.|+||+.++. +.+.|.|.+.. ...+|.+.+++|.|+++....
T Consensus 135 ~~~~Fs~~l~~~~~---~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~---------~~~~~~v~l~~i~v~~~~~~~---- 198 (283)
T cd05471 135 SSPVFSFYLGRDGD---GGNGGELTFGGIDPSKYTGDLTYTPVVSN---------GPGYWQVPLDGISVGGKSVIS---- 198 (283)
T ss_pred CCCEEEEEEcCCCC---CCCCCEEEEcccCccccCCceEEEecCCC---------CCCEEEEEeCeEEECCceeee----
Confidence 3789999987531 125899999999975 33444444422 245999999999999874111
Q ss_pred cccCCCCCCcEEEccccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcccccccccceEEEEcCceEE
Q 042725 299 FHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERGVEI 378 (441)
Q Consensus 299 ~~~~~~~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~i~f~~~gg~~~ 378 (441)
......++|||||+++++|+++++++++++.+..... ...+...|.... .+|+|+|+|
T Consensus 199 ----~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~------~~p~i~f~f------ 256 (283)
T cd05471 199 ----SSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSSS------DGGYGVDCSPCD------TLPDITFTF------ 256 (283)
T ss_pred ----cCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCccccc------CCcEEEeCcccC------cCCCEEEEE------
Confidence 1345679999999999999999999998776554430 112234454433 589999999
Q ss_pred EEcCCcEEEEeCCCeEEEEEEecCCCCCceeeechhhhcceEEEEECCCCEEEEec
Q 042725 379 LIEKERVLADVGGGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAK 434 (441)
Q Consensus 379 ~i~~~~y~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfA~ 434 (441)
.||||++|||++|++||.+++|||||+
T Consensus 257 -----------------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -----------------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -----------------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 499999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.95 E-value=9.9e-28 Score=209.68 Aligned_cols=153 Identities=42% Similarity=0.803 Sum_probs=122.0
Q ss_pred EEEEEeeCCCCceEEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCCCCcEE
Q 042725 84 LVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQNRLCHY 163 (441)
Q Consensus 84 y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~~~ 163 (441)
|+++|.||||+|++.|++||||+.+|++| ..+.|+|.+|+||+.++|.++.|...... ....|..++.|.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C-------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~--~~~~~~~~~~C~y 71 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC-------PDPPFDPSKSSTYRPVPCSSPQCSSAPSF--CPCCCCSNNSCPY 71 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-----------STT-TTSSBEC-BTTSHHHHHCTSS--BTCCTCESSEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC-------CCcccCCccCCcccccCCCCcchhhcccc--cccCCCCcCcccc
Confidence 78999999999999999999999999998 35889999999999999999999865432 1233446788999
Q ss_pred eEEeCCCceEEeeEEEEEEeeCCC----cccCCeEEEeeeCCC----CcceeEeecCCCCCccccc---ccCceeEecCC
Q 042725 164 SYFYADGTFAEGNLVKEKFTFSAA----QSTLPLILGCAKDTS----EDKGILGMNLGRLSFASQA---KISKFSYCVPT 232 (441)
Q Consensus 164 ~~~Yg~g~~~~G~~~~D~v~~g~~----~~~~~~~fg~~~~~~----~~~GIlGLg~~~~s~~~q~---~~~~Fs~~l~~ 232 (441)
.+.|++++.+.|.+++|++.++.. ..+.++.|||+.... ..+||||||+..+|++.|+ ..++|++||..
T Consensus 72 ~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyCL~~ 151 (164)
T PF14543_consen 72 SQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLFYGADGILGLGRGPLSLPSQLASSSGNKFSYCLPS 151 (164)
T ss_dssp EEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHHHHHH--SEEEEEB-S
T ss_pred eeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCCcCCCcccccCCCcccHHHHHHHhcCCeEEEECCC
Confidence 999999999999999999999874 356789999998864 6899999999999999999 78999999998
Q ss_pred CCCCCCcCCccceeeCC
Q 042725 233 RVSRVGYTPTGSFYLGE 249 (441)
Q Consensus 233 ~~~~~~~~~~g~l~lG~ 249 (441)
.. ....|.|+||+
T Consensus 152 -~~---~~~~g~l~fG~ 164 (164)
T PF14543_consen 152 -SS---PSSSGFLSFGD 164 (164)
T ss_dssp --S---SSSEEEEEECS
T ss_pred -CC---CCCCEEEEeCc
Confidence 11 22589999985
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.91 E-value=6.9e-24 Score=185.27 Aligned_cols=157 Identities=31% Similarity=0.522 Sum_probs=122.0
Q ss_pred eeEEeeeeEEECCEEeecCCCccccCCCCCCcEEEccccccccccHHHHHHHHHHHHHHhCCCc-ccccccCCCcceecc
Q 042725 277 AYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRM-KKGYVYGGVADMCFD 355 (441)
Q Consensus 277 ~w~v~~~~i~v~g~~~~~~~~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~-~~~~~~~~~~~~C~~ 355 (441)
+|.|.+++|+||++.+.++...|.. ..+...++|||||++++||+++|+++.+++.+++.... ...-........|+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~ 79 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYN 79 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEE
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceee
Confidence 5899999999999999999988876 66788899999999999999999999999999876542 110011234568999
Q ss_pred CCc---ccccccccceEEEEcCceEEEEcCCcEEEEeCCCeEEEEEEecCCCCCceeeechhhhcceEEEEECCCCEEEE
Q 042725 356 GNA---MEVGRLIGDMVFEFERGVEILIEKERVLADVGGGVHCVGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGF 432 (441)
Q Consensus 356 ~~~---~~~~~~lP~i~f~~~gg~~~~i~~~~y~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGf 432 (441)
... ......+|+|+|+|.+|..+.|+|++|++...++..|++|.++.....+..|||..+|+++.++||++++||||
T Consensus 80 ~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~igF 159 (161)
T PF14541_consen 80 LSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIGF 159 (161)
T ss_dssp GGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEEE
T ss_pred ccccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEEE
Confidence 775 23444799999999889999999999999988889999998883333467999999999999999999999999
Q ss_pred ec
Q 042725 433 AK 434 (441)
Q Consensus 433 A~ 434 (441)
++
T Consensus 160 ~~ 161 (161)
T PF14541_consen 160 AP 161 (161)
T ss_dssp EE
T ss_pred eC
Confidence 86
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.88 E-value=4.3e-22 Score=162.43 Aligned_cols=99 Identities=34% Similarity=0.618 Sum_probs=85.6
Q ss_pred EEEeeCCCCceEEEEEECCCCceeEeCCCCC--CCCCCCCC-CCCCCCCcccccCCCCCCCCCccCCCCCCCCCCCCCcE
Q 042725 86 VSLPIGTPPQTQEMVLDTGSQLSWIKCHKKA--PAPPTTSF-DPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQNRLCH 162 (441)
Q Consensus 86 ~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~--~~~~~~~y-~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~~ 162 (441)
++|.||||||++.|+|||||+++||+|..|. .|..+..| ++++|++++... |.
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~~------------------------~~ 56 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDNG------------------------CT 56 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCCC------------------------cE
Confidence 4799999999999999999999999999887 34456667 999999988744 48
Q ss_pred EeEEeCCCceEEeeEEEEEEeeCCCcccCCeEEEeeeCC-------CCcceeEee
Q 042725 163 YSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDT-------SEDKGILGM 210 (441)
Q Consensus 163 ~~~~Yg~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~-------~~~~GIlGL 210 (441)
|.+.|++|+. .|.++.|+|+|++ ..++++.|||+... ...+|||||
T Consensus 57 ~~~~Y~~g~~-~g~~~~D~v~ig~-~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 57 FSITYGTGSL-SGGLSTDTVSIGD-IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEEEeCCCeE-EEEEEEEEEEECC-EEECCEEEEEEEecCCccccccccccccCC
Confidence 9999999975 5999999999998 57889999999876 357999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.14 E-value=9.1e-06 Score=63.85 Aligned_cols=92 Identities=16% Similarity=0.176 Sum_probs=63.9
Q ss_pred EEEEEEeeCCCCceEEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCCCCcE
Q 042725 83 ALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQNRLCH 162 (441)
Q Consensus 83 ~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~~ 162 (441)
.|++++.|+ .+++.++||||++.+|+.-.....+.. .. .....
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~~--~~---------------------------------~~~~~ 44 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLGL--PL---------------------------------TLGGK 44 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcCC--Cc---------------------------------cCCCc
Confidence 367999999 699999999999999995321100000 00 00114
Q ss_pred EeEEeCCCceEEeeEEEEEEeeCCCcccCCeEEEeeeCCC-CcceeEeecC
Q 042725 163 YSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTS-EDKGILGMNL 212 (441)
Q Consensus 163 ~~~~Yg~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~~-~~~GIlGLg~ 212 (441)
..+...+|.........+.+++|+ ....++.+....... ..+||||+.+
T Consensus 45 ~~~~~~~G~~~~~~~~~~~i~ig~-~~~~~~~~~v~d~~~~~~~gIlG~d~ 94 (96)
T cd05483 45 VTVQTANGRVRAARVRLDSLQIGG-ITLRNVPAVVLPGDALGVDGLLGMDF 94 (96)
T ss_pred EEEEecCCCccceEEEcceEEECC-cEEeccEEEEeCCcccCCceEeChHH
Confidence 567777777666677799999998 467777777765544 5899999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.97 E-value=0.0067 Score=49.94 Aligned_cols=95 Identities=12% Similarity=0.130 Sum_probs=63.1
Q ss_pred eEEEEEEEeeCCCCceEEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCCCC
Q 042725 81 SMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQNRL 160 (441)
Q Consensus 81 ~~~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~ 160 (441)
+..|++++.|. .+++.+++|||++.+-++..-... -..++.. ..
T Consensus 9 ~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~----Lgl~~~~------------------------------~~ 52 (121)
T TIGR02281 9 DGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQR----LGLDLNR------------------------------LG 52 (121)
T ss_pred CCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHH----cCCCccc------------------------------CC
Confidence 56788999997 589999999999999885321110 0001100 00
Q ss_pred cEEeEEeCCCceEEeeEEEEEEeeCCCcccCCeEEEeeeCCCCcceeEeecC
Q 042725 161 CHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTSEDKGILGMNL 212 (441)
Q Consensus 161 ~~~~~~Yg~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~~~~~GIlGLg~ 212 (441)
....+.=..|......+..|.+++|+ ....++.+.+.......+|+|||.+
T Consensus 53 ~~~~~~ta~G~~~~~~~~l~~l~iG~-~~~~nv~~~v~~~~~~~~~LLGm~f 103 (121)
T TIGR02281 53 YTVTVSTANGQIKAARVTLDRVAIGG-IVVNDVDAMVAEGGALSESLLGMSF 103 (121)
T ss_pred ceEEEEeCCCcEEEEEEEeCEEEECC-EEEeCcEEEEeCCCcCCceEcCHHH
Confidence 12344445565555667899999999 5778888777755445689999975
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.67 E-value=0.014 Score=44.86 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=55.3
Q ss_pred EEeeCCCCceEEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCCCCcEEeEE
Q 042725 87 SLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQNRLCHYSYF 166 (441)
Q Consensus 87 ~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~~~~~~ 166 (441)
++.|+ .+++++++|||++.+.+.-.-.. . -...+.. ......+.
T Consensus 2 ~v~vn--g~~~~~liDTGa~~~~i~~~~~~---~-l~~~~~~------------------------------~~~~~~~~ 45 (90)
T PF13650_consen 2 PVKVN--GKPVRFLIDTGASISVISRSLAK---K-LGLKPRP------------------------------KSVPISVS 45 (90)
T ss_pred EEEEC--CEEEEEEEcCCCCcEEECHHHHH---H-cCCCCcC------------------------------CceeEEEE
Confidence 56677 58999999999998888421110 0 0000000 00023333
Q ss_pred eCCCceEEeeEEEEEEeeCCCcccCCeEEEeeeCCCCcceeEeecC
Q 042725 167 YADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTSEDKGILGMNL 212 (441)
Q Consensus 167 Yg~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~~~~~GIlGLg~ 212 (441)
-.+|.........+.+++|+ ....++.|.........+||||+-+
T Consensus 46 ~~~g~~~~~~~~~~~i~ig~-~~~~~~~~~v~~~~~~~~~iLG~df 90 (90)
T PF13650_consen 46 GAGGSVTVYRGRVDSITIGG-ITLKNVPFLVVDLGDPIDGILGMDF 90 (90)
T ss_pred eCCCCEEEEEEEEEEEEECC-EEEEeEEEEEECCCCCCEEEeCCcC
Confidence 44455555667777999998 4666777777765668899999843
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.98 E-value=0.034 Score=45.93 Aligned_cols=24 Identities=13% Similarity=0.021 Sum_probs=22.0
Q ss_pred eeeechhhhcceEEEEECCCCEEE
Q 042725 408 SNIFGNFHQQNLWVEFDLASRRVG 431 (441)
Q Consensus 408 ~~iLG~~fl~~~y~vfD~~~~riG 431 (441)
..|||..||+.+-.+.|+.+.+|-
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~ 123 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLR 123 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEE
Confidence 479999999999999999999875
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.33 E-value=0.1 Score=43.07 Aligned_cols=92 Identities=10% Similarity=0.095 Sum_probs=55.4
Q ss_pred eEEEEEEEeeCCCCceEEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCCCC
Q 042725 81 SMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQNRL 160 (441)
Q Consensus 81 ~~~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~ 160 (441)
...+++++.|+ ++++.+++|||++..++.-.-+. .++.. ....
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~-----------------~lgl~------------------~~~~ 56 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAE-----------------KCGLM------------------RLID 56 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHH-----------------HcCCc------------------cccC
Confidence 34566999998 68999999999999999421111 11000 0000
Q ss_pred cEEe-EEeC-CCceEEeeEEEEEEeeCCCcccCCeEEEeeeCCCCcceeEeecC
Q 042725 161 CHYS-YFYA-DGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTSEDKGILGMNL 212 (441)
Q Consensus 161 ~~~~-~~Yg-~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~~~~~GIlGLg~ 212 (441)
.++. ...+ ++....|....+.+.+++. .. ...|.+... ...|+|||+.+
T Consensus 57 ~~~~~~~~g~g~~~~~g~~~~~~l~i~~~-~~-~~~~~Vl~~-~~~d~ILG~d~ 107 (124)
T cd05479 57 KRFQGIAKGVGTQKILGRIHLAQVKIGNL-FL-PCSFTVLED-DDVDFLIGLDM 107 (124)
T ss_pred cceEEEEecCCCcEEEeEEEEEEEEECCE-Ee-eeEEEEECC-CCcCEEecHHH
Confidence 0122 2233 2234457777889999984 43 356665533 37899999965
No 32
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=94.37 E-value=0.5 Score=45.79 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=31.5
Q ss_pred EeCCCceEEeeEEEEEEeeCCC--cccCCeEEEeeeC----------C--------CCcceeEeecCC
Q 042725 166 FYADGTFAEGNLVKEKFTFSAA--QSTLPLILGCAKD----------T--------SEDKGILGMNLG 213 (441)
Q Consensus 166 ~Yg~g~~~~G~~~~D~v~~g~~--~~~~~~~fg~~~~----------~--------~~~~GIlGLg~~ 213 (441)
.|.+|..| |-+.+.+|+|++. ..++-|.++-... . -.+.||||+|.-
T Consensus 83 ~F~sgytW-GsVr~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 83 QFASGYTW-GSVRTADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred hccCcccc-cceEEEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 67888777 9999999999984 1333333332111 0 158999999874
No 33
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=93.27 E-value=0.78 Score=38.47 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=25.4
Q ss_pred eeeechhhhcceEEEEECCCCEEEEecC
Q 042725 408 SNIFGNFHQQNLWVEFDLASRRVGFAKA 435 (441)
Q Consensus 408 ~~iLG~~fl~~~y~vfD~~~~riGfA~~ 435 (441)
..|||..||+.+..+-|..+++|-|-..
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 4899999999999999999999998653
No 34
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=91.53 E-value=1.6 Score=34.89 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=19.5
Q ss_pred eeeechhhhcceEEEEECCCCE
Q 042725 408 SNIFGNFHQQNLWVEFDLASRR 429 (441)
Q Consensus 408 ~~iLG~~fl~~~y~vfD~~~~r 429 (441)
..+||..||+.+=.+.|+.+.+
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~ 106 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQG 106 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCc
Confidence 5799999999999999988765
No 35
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=90.93 E-value=0.26 Score=38.12 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.2
Q ss_pred EEEEEeeCCCCceEEEEEECCCCceeEe
Q 042725 84 LVVSLPIGTPPQTQEMVLDTGSQLSWIK 111 (441)
Q Consensus 84 y~~~I~iGtP~Q~~~v~~DTGSs~lWV~ 111 (441)
|++++.|+ .+++.+++||||+..++.
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis 26 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVIS 26 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeC
Confidence 45889998 599999999999999995
No 36
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=89.63 E-value=2 Score=32.76 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=20.2
Q ss_pred EEeeCCCCceEEEEEECCCCceeEeCC
Q 042725 87 SLPIGTPPQTQEMVLDTGSQLSWIKCH 113 (441)
Q Consensus 87 ~I~iGtP~Q~~~v~~DTGSs~lWV~c~ 113 (441)
++.|. ++++++++|||++.+-+.-.
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHH
Confidence 45565 58999999999999999633
No 37
>PF13650 Asp_protease_2: Aspartyl protease
Probab=88.06 E-value=0.7 Score=35.10 Aligned_cols=29 Identities=21% Similarity=0.500 Sum_probs=24.3
Q ss_pred EEECCEEeecCCCccccCCCCCCcEEEccccccccccHHHHHHH
Q 042725 285 VRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKI 328 (441)
Q Consensus 285 i~v~g~~~~~~~~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~l 328 (441)
+.|+|+.+. ++||||++...++++.++++
T Consensus 3 v~vng~~~~---------------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPVR---------------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEEE---------------EEEcCCCCcEEECHHHHHHc
Confidence 677887664 99999999999999888664
No 38
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=87.93 E-value=1 Score=36.92 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=26.9
Q ss_pred eeEEeeeeEEECCEEeecCCCccccCCCCCCcEEEccccccccccHHHHHHH
Q 042725 277 AYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKI 328 (441)
Q Consensus 277 ~w~v~~~~i~v~g~~~~~~~~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~l 328 (441)
++.++ +.|||+.+. ++||||.+.+.++.+..+++
T Consensus 11 ~~~v~---~~InG~~~~---------------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 11 HFYAT---GRVNGRNVR---------------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred eEEEE---EEECCEEEE---------------EEEECCCCcEEcCHHHHHHc
Confidence 55554 668888664 89999999999999988653
No 39
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=87.80 E-value=2.3 Score=36.38 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=18.8
Q ss_pred cEEEccccccccccHHHHHHHH
Q 042725 308 QTIVDSGSEFTYLVDVAYNKIK 329 (441)
Q Consensus 308 ~~ivDTGTs~~~lp~~~~~~l~ 329 (441)
.+++|||+....+..++.+.|-
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEeCCCccceeehhhHHhhC
Confidence 3999999999999988887654
No 40
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=87.63 E-value=1.6 Score=38.78 Aligned_cols=96 Identities=13% Similarity=0.124 Sum_probs=61.3
Q ss_pred eeEEEEEEEeeCCCCceEEEEEECCCCceeEeCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCCC
Q 042725 80 YSMALVVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPAPPTTSFDPSRSSSFSVLPCTHPLCKPRIVDFTLPTDCDQNR 159 (441)
Q Consensus 80 ~~~~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c~~~~~~~~~~~y~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~ 159 (441)
.+.+|.++..|- .|++..++|||-+..-++-.... .--||.+. -
T Consensus 102 ~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~----RlGid~~~------------------------------l 145 (215)
T COG3577 102 RDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR----RLGIDLNS------------------------------L 145 (215)
T ss_pred CCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH----HhCCCccc------------------------------c
Confidence 356788999997 69999999999999888533221 11122221 0
Q ss_pred CcEEeEEeCCCceEEeeEEEEEEeeCCCcccCCeEEEeeeCCCCcceeEeecC
Q 042725 160 LCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTSEDKGILGMNL 212 (441)
Q Consensus 160 ~~~~~~~Yg~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~~~~~GIlGLg~ 212 (441)
..++.+.-..|...-..+..|.+.||+ ....++.=-++.......-+|||++
T Consensus 146 ~y~~~v~TANG~~~AA~V~Ld~v~IG~-I~~~nV~A~V~~~g~L~~sLLGMSf 197 (215)
T COG3577 146 DYTITVSTANGRARAAPVTLDRVQIGG-IRVKNVDAMVAEDGALDESLLGMSF 197 (215)
T ss_pred CCceEEEccCCccccceEEeeeEEEcc-EEEcCchhheecCCccchhhhhHHH
Confidence 124556667787666789999999998 4665543333333333445677754
No 41
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=86.91 E-value=1.1 Score=34.49 Aligned_cols=30 Identities=27% Similarity=0.496 Sum_probs=25.5
Q ss_pred eEEECCEEeecCCCccccCCCCCCcEEEccccccccccHHHHHHH
Q 042725 284 GVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKI 328 (441)
Q Consensus 284 ~i~v~g~~~~~~~~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~l 328 (441)
.+.|+|+.+. +++|||++...++.+.+..+
T Consensus 4 ~~~Ing~~i~---------------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK---------------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE---------------EEEcCCcceEEeCHHHHHHh
Confidence 3778999875 89999999999999988654
No 42
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=85.81 E-value=1.4 Score=32.41 Aligned_cols=29 Identities=21% Similarity=0.546 Sum_probs=25.0
Q ss_pred EEECCEEeecCCCccccCCCCCCcEEEccccccccccHHHHHHH
Q 042725 285 VRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKI 328 (441)
Q Consensus 285 i~v~g~~~~~~~~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~l 328 (441)
+.|+|..+. +++|||.+...++.+.++.+
T Consensus 13 ~~I~g~~~~---------------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK---------------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE---------------EEEeCCCcceecCHHHHHHh
Confidence 678888775 99999999999999988764
No 43
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=82.49 E-value=2.2 Score=31.34 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=25.6
Q ss_pred eEEEEEEEeeCCCCceEEEEEECCCCceeEeC
Q 042725 81 SMALVVSLPIGTPPQTQEMVLDTGSQLSWIKC 112 (441)
Q Consensus 81 ~~~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~c 112 (441)
...+++++.|| ++.+..++|||++...|+.
T Consensus 6 ~g~~~v~~~I~--g~~~~alvDtGat~~fis~ 35 (72)
T PF13975_consen 6 PGLMYVPVSIG--GVQVKALVDTGATHNFISE 35 (72)
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceecCH
Confidence 34577999999 4999999999999999853
No 44
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=81.40 E-value=1.9 Score=32.89 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=24.7
Q ss_pred EEECCEEeecCCCccccCCCCCCcEEEccccccccccHHHHHHH
Q 042725 285 VRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKI 328 (441)
Q Consensus 285 i~v~g~~~~~~~~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~l 328 (441)
+.|||+.+. +++|||.+.+.++++.++.+
T Consensus 3 v~InG~~~~---------------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV---------------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE---------------EEEECCCCeEEECHHHhhhc
Confidence 678888775 89999999999999888764
No 45
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=80.40 E-value=3 Score=31.93 Aligned_cols=29 Identities=21% Similarity=0.437 Sum_probs=23.9
Q ss_pred EEECCEEeecCCCccccCCCCCCcEEEccccccccccHHHHHHH
Q 042725 285 VRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKI 328 (441)
Q Consensus 285 i~v~g~~~~~~~~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~l 328 (441)
+.|+++.+. ++||||++.+.++.+..+.+
T Consensus 7 v~i~~~~~~---------------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQPVR---------------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEEEE---------------EEEECCCCcEEcCHHHHHHc
Confidence 678887765 89999999999998876654
No 46
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=78.80 E-value=3.8 Score=36.55 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=19.8
Q ss_pred eeeechhhhcceEEEEECCCCEEEEec
Q 042725 408 SNIFGNFHQQNLWVEFDLASRRVGFAK 434 (441)
Q Consensus 408 ~~iLG~~fl~~~y~vfD~~~~riGfA~ 434 (441)
..|||..|+|.|+=....+ .+|-|-.
T Consensus 92 d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 92 DIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 4899999999888766665 4676643
No 47
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=77.35 E-value=3.5 Score=32.14 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=21.9
Q ss_pred EEEeeCCCCceEEEEEECCCCceeEeCC
Q 042725 86 VSLPIGTPPQTQEMVLDTGSQLSWIKCH 113 (441)
Q Consensus 86 ~~I~iGtP~Q~~~v~~DTGSs~lWV~c~ 113 (441)
.+|.|. .+++++++||||+.+-++..
T Consensus 8 i~v~i~--g~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 8 ITVKIN--GKKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEET--TEEEEEEEETTBSSEEESSG
T ss_pred EEEeEC--CEEEEEEEecCCCcceeccc
Confidence 678887 48999999999999998643
No 48
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=75.64 E-value=5.7 Score=35.41 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=27.7
Q ss_pred ceeEEeeeeEEECCEEeecCCCccccCCCCCCcEEEccccccccccHHHHHH
Q 042725 276 LAYSVPMQGVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNK 327 (441)
Q Consensus 276 ~~w~v~~~~i~v~g~~~~~~~~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~ 327 (441)
++|.++ ..|||+.+. .+||||.|.+.++++..+.
T Consensus 104 GHF~a~---~~VNGk~v~---------------fLVDTGATsVal~~~dA~R 137 (215)
T COG3577 104 GHFEAN---GRVNGKKVD---------------FLVDTGATSVALNEEDARR 137 (215)
T ss_pred CcEEEE---EEECCEEEE---------------EEEecCcceeecCHHHHHH
Confidence 355554 679999886 8999999999999987754
No 49
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=72.49 E-value=14 Score=28.29 Aligned_cols=79 Identities=18% Similarity=0.194 Sum_probs=45.1
Q ss_pred CCCCcEEEccccccccccHHHHHHHHHHHHHHhCCCcccccccCCCcceeccCCcccccccccceEEEEcCceEEEEcCC
Q 042725 304 SGSGQTIVDSGSEFTYLVDVAYNKIKEEIVRLAGPRMKKGYVYGGVADMCFDGNAMEVGRLIGDMVFEFERGVEILIEKE 383 (441)
Q Consensus 304 ~~~~~~ivDTGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~lP~i~f~~~gg~~~~i~~~ 383 (441)
+.+...+||||+....+|....+.. . .+| .+.++=.+|..+..-++
T Consensus 7 ~s~~~fLVDTGA~vSviP~~~~~~~-------~--------------~~~-------------~~~l~AANgt~I~tyG~ 52 (89)
T cd06094 7 TSGLRFLVDTGAAVSVLPASSTKKS-------L--------------KPS-------------PLTLQAANGTPIATYGT 52 (89)
T ss_pred CCCcEEEEeCCCceEeecccccccc-------c--------------cCC-------------ceEEEeCCCCeEeeeee
Confidence 4456699999999999997644320 0 011 44555556666666655
Q ss_pred cEEE-EeCCCeEE-EEEEecCCCCCceeeechhhhcce
Q 042725 384 RVLA-DVGGGVHC-VGIGRSEMLGLASNIFGNFHQQNL 419 (441)
Q Consensus 384 ~y~~-~~~~~~~C-~~i~~~~~~~~~~~iLG~~fl~~~ 419 (441)
..+. ..+..... .-|.-.+- +.-|||.-||++|
T Consensus 53 ~~l~ldlGlrr~~~w~FvvAdv---~~pIlGaDfL~~~ 87 (89)
T cd06094 53 RSLTLDLGLRRPFAWNFVVADV---PHPILGADFLQHY 87 (89)
T ss_pred EEEEEEcCCCcEEeEEEEEcCC---CcceecHHHHHHc
Confidence 4443 33222122 12222221 3469999999976
No 50
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=70.41 E-value=5.6 Score=30.48 Aligned_cols=23 Identities=39% Similarity=0.440 Sum_probs=19.7
Q ss_pred EEeeCCCCceEEEEEECCCCceeEe
Q 042725 87 SLPIGTPPQTQEMVLDTGSQLSWIK 111 (441)
Q Consensus 87 ~I~iGtP~Q~~~v~~DTGSs~lWV~ 111 (441)
++.|+ .|.+++++|||+.++-+.
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~ 24 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIA 24 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEc
Confidence 35666 699999999999999995
No 51
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=68.23 E-value=6 Score=30.80 Aligned_cols=26 Identities=23% Similarity=0.650 Sum_probs=21.6
Q ss_pred eEEECCEEeecCCCccccCCCCCCcEEEccccccccccHHH
Q 042725 284 GVRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVA 324 (441)
Q Consensus 284 ~i~v~g~~~~~~~~~~~~~~~~~~~~ivDTGTs~~~lp~~~ 324 (441)
.+.++|+.+. ++||||+....++.+.
T Consensus 9 ~v~i~g~~i~---------------~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 9 TVKINGKKIK---------------ALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEETTEEEE---------------EEEETTBSSEEESSGG
T ss_pred EEeECCEEEE---------------EEEecCCCcceecccc
Confidence 4778888775 9999999999998663
No 52
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=67.44 E-value=6.1 Score=30.64 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=18.4
Q ss_pred EEEccccccccccHHHHHHHH
Q 042725 309 TIVDSGSEFTYLVDVAYNKIK 329 (441)
Q Consensus 309 ~ivDTGTs~~~lp~~~~~~l~ 329 (441)
+.+|||++...+|...++++.
T Consensus 13 ~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 13 FQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEecCCEEEeccHHHHhhhc
Confidence 899999999999999887643
No 53
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=65.08 E-value=41 Score=26.75 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=26.0
Q ss_pred eEEeCCCceEEeeEEEEEEeeCCCcccCCeEEEeeeCCCCcceeEeecC
Q 042725 164 SYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDTSEDKGILGMNL 212 (441)
Q Consensus 164 ~~~Yg~g~~~~G~~~~D~v~~g~~~~~~~~~fg~~~~~~~~~GIlGLg~ 212 (441)
.+.-.+|....-....+++.+++. .. .. . +........-+||+.+
T Consensus 48 ~~~tA~G~~~~~~v~~~~v~igg~-~~-~~-~-v~~~~~~~~~LLG~~~ 92 (107)
T TIGR03698 48 RVYLADGREVLTDVAKASIIINGL-EI-DA-F-VESLGYVDEPLLGTEL 92 (107)
T ss_pred EEEecCCcEEEEEEEEEEEEECCE-EE-EE-E-EEecCCCCccEecHHH
Confidence 455566765567788999999984 32 21 1 2211222266888754
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=61.82 E-value=11 Score=31.10 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=23.3
Q ss_pred EEECCEEeecCCCccccCCCCCCcEEEccccccccccHHHHHHH
Q 042725 285 VRIQGKRLDIPATAFHPDASGSGQTIVDSGSEFTYLVDVAYNKI 328 (441)
Q Consensus 285 i~v~g~~~~~~~~~~~~~~~~~~~~ivDTGTs~~~lp~~~~~~l 328 (441)
+++||+.+. |+||||+..+.++.+.++++
T Consensus 29 ~~ing~~vk---------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPVK---------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEEE---------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEEE---------------EEEeCCCCccccCHHHHHHc
Confidence 678999875 99999999999999988763
No 55
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=59.55 E-value=23 Score=26.42 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=8.7
Q ss_pred chHHHHHHHHHHhhh
Q 042725 5 NKTVLLLLLLLTVLS 19 (441)
Q Consensus 5 ~~~~l~ll~~~~~~~ 19 (441)
.+.||+-||+++++-
T Consensus 3 RRlwiLslLAVtLtV 17 (100)
T PF05984_consen 3 RRLWILSLLAVTLTV 17 (100)
T ss_pred hhhHHHHHHHHHHHH
Confidence 455666666665543
No 56
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=54.49 E-value=16 Score=31.45 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=21.3
Q ss_pred EEEeeCCCCceEEEEEECCCCceeEeC
Q 042725 86 VSLPIGTPPQTQEMVLDTGSQLSWIKC 112 (441)
Q Consensus 86 ~~I~iGtP~Q~~~v~~DTGSs~lWV~c 112 (441)
..+.++.-.-+++++|||||....+..
T Consensus 35 ~~v~l~~~~t~i~vLfDSGSPTSfIr~ 61 (177)
T PF12384_consen 35 AIVQLNCKGTPIKVLFDSGSPTSFIRS 61 (177)
T ss_pred EEEEEeecCcEEEEEEeCCCccceeeh
Confidence 445555567899999999999999853
No 57
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=53.76 E-value=8.4 Score=30.06 Aligned_cols=21 Identities=43% Similarity=0.469 Sum_probs=11.0
Q ss_pred chHHHHHHHHHHhhhhccccc
Q 042725 5 NKTVLLLLLLLTVLSLSAQAS 25 (441)
Q Consensus 5 ~~~~l~ll~~~~~~~~~~~~~ 25 (441)
+|++|+|.++++++.++++++
T Consensus 3 SK~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred hhHHHHHHHHHHHHHHHHhhh
Confidence 666666655555444444443
No 58
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=44.49 E-value=1.9e+02 Score=28.26 Aligned_cols=39 Identities=10% Similarity=0.086 Sum_probs=30.9
Q ss_pred EE-EEEEecCCCCCceeeechhhhcceEEEEECCCCEEEEecC
Q 042725 394 HC-VGIGRSEMLGLASNIFGNFHQQNLWVEFDLASRRVGFAKA 435 (441)
Q Consensus 394 ~C-~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfA~~ 435 (441)
.| +.+....+ ....||.-.||++--.-|++++++-++..
T Consensus 307 ~c~ftV~d~~~---~d~llGLd~Lrr~~ccIdL~~~~L~ig~~ 346 (380)
T KOG0012|consen 307 PCSFTVLDRRD---MDLLLGLDMLRRHQCCIDLKTNVLRIGNT 346 (380)
T ss_pred ccceEEecCCC---cchhhhHHHHHhccceeecccCeEEecCC
Confidence 37 66665543 24899999999999999999998887764
No 59
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=42.45 E-value=16 Score=29.80 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=17.7
Q ss_pred EEEccccc-cccccHHHHHHH
Q 042725 309 TIVDSGSE-FTYLVDVAYNKI 328 (441)
Q Consensus 309 ~ivDTGTs-~~~lp~~~~~~l 328 (441)
.+||||-+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 58999999 999999998764
No 60
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=39.24 E-value=28 Score=27.30 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.6
Q ss_pred cEEEccccccccccHHH
Q 042725 308 QTIVDSGSEFTYLVDVA 324 (441)
Q Consensus 308 ~~ivDTGTs~~~lp~~~ 324 (441)
.++||||++.++++.+-
T Consensus 13 ~~~~DTGSs~~Wv~~~~ 29 (109)
T cd05470 13 NVLLDTGSSNLWVPSVD 29 (109)
T ss_pred EEEEeCCCCCEEEeCCC
Confidence 48999999999998653
No 61
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=37.91 E-value=54 Score=26.98 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=21.0
Q ss_pred EEEEEEeeCCCCceEEEEEECCCCceeEe
Q 042725 83 ALVVSLPIGTPPQTQEMVLDTGSQLSWIK 111 (441)
Q Consensus 83 ~y~~~I~iGtP~Q~~~v~~DTGSs~lWV~ 111 (441)
-+|++++|+ .++++.++|||...+-+.
T Consensus 24 mLyI~~~in--g~~vkA~VDtGAQ~tims 50 (124)
T PF09668_consen 24 MLYINCKIN--GVPVKAFVDTGAQSTIMS 50 (124)
T ss_dssp --EEEEEET--TEEEEEEEETT-SS-EEE
T ss_pred eEEEEEEEC--CEEEEEEEeCCCCccccC
Confidence 466999999 599999999999999984
No 62
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=32.64 E-value=75 Score=22.39 Aligned_cols=19 Identities=26% Similarity=0.552 Sum_probs=16.5
Q ss_pred EEEccccccccccHHHHHH
Q 042725 309 TIVDSGSEFTYLVDVAYNK 327 (441)
Q Consensus 309 ~ivDTGTs~~~lp~~~~~~ 327 (441)
+++|||.+...+..+.++.
T Consensus 12 ~liDtgs~~~~~~~~~~~~ 30 (92)
T cd00303 12 ALVDSGASVNFISESLAKK 30 (92)
T ss_pred EEEcCCCcccccCHHHHHH
Confidence 8999999999998887654
No 63
>PF15240 Pro-rich: Proline-rich
Probab=29.64 E-value=30 Score=30.27 Aligned_cols=15 Identities=47% Similarity=0.713 Sum_probs=7.0
Q ss_pred HHHHHHHHhhhhccc
Q 042725 9 LLLLLLLTVLSLSAQ 23 (441)
Q Consensus 9 l~ll~~~~~~~~~~~ 23 (441)
|++||-++||+++.|
T Consensus 2 LlVLLSvALLALSSA 16 (179)
T PF15240_consen 2 LLVLLSVALLALSSA 16 (179)
T ss_pred hhHHHHHHHHHhhhc
Confidence 444444444444443
No 64
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=28.50 E-value=77 Score=26.39 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=22.5
Q ss_pred EEEEEeeCCCCceEEEEEECCCCceeEe
Q 042725 84 LVVSLPIGTPPQTQEMVLDTGSQLSWIK 111 (441)
Q Consensus 84 y~~~I~iGtP~Q~~~v~~DTGSs~lWV~ 111 (441)
-.+.+.|.+ ++..+++|+|++..+|.
T Consensus 22 i~g~~~I~~--~~~~vLiDSGAThsFIs 47 (135)
T PF08284_consen 22 ITGTFLINS--IPASVLIDSGATHSFIS 47 (135)
T ss_pred EEEEEEecc--EEEEEEEecCCCcEEcc
Confidence 348888885 99999999999999984
No 65
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=22.34 E-value=79 Score=29.69 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=14.2
Q ss_pred cEEEccccccccccHH
Q 042725 308 QTIVDSGSEFTYLVDV 323 (441)
Q Consensus 308 ~~ivDTGTs~~~lp~~ 323 (441)
.++||||++.+++|..
T Consensus 15 ~v~~DTGS~~~wv~~~ 30 (278)
T cd06097 15 NLDLDTGSSDLWVFSS 30 (278)
T ss_pred EEEEeCCCCceeEeeC
Confidence 3899999999999965
No 66
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=21.21 E-value=4.2e+02 Score=20.94 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=22.1
Q ss_pred E-EEEEecCCCCCceeeechhhhcceEEEEECCC
Q 042725 395 C-VGIGRSEMLGLASNIFGNFHQQNLWVEFDLAS 427 (441)
Q Consensus 395 C-~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~ 427 (441)
| +.+..... ...+||.-.||++--.-|+++
T Consensus 73 CSftVld~~~---~d~llGLdmLkrhqc~IdL~k 103 (103)
T cd05480 73 CSAQVVDDNE---KNFSLGLQTLKSLKCVINLEK 103 (103)
T ss_pred EEEEEEcCCC---cceEeeHHHHhhcceeeeccC
Confidence 7 56655432 348999999999988888763
No 67
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=20.84 E-value=96 Score=29.07 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEeeCC---CCceEEEEEECCCCceeEeC
Q 042725 86 VSLPIGT---PPQTQEMVLDTGSQLSWIKC 112 (441)
Q Consensus 86 ~~I~iGt---P~Q~~~v~~DTGSs~lWV~c 112 (441)
..|.||. +.....+++|||++.+.+|-
T Consensus 164 ~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~ 193 (273)
T cd05475 164 ASLLFNGQPTGGKGLEVVFDSGSSYTYFNA 193 (273)
T ss_pred eEEEECCEECcCCCceEEEECCCceEEcCC
Confidence 4578874 22346799999999999973
Done!