Query 042728
Match_columns 486
No_of_seqs 356 out of 2646
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 08:50:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.7E-67 8E-72 556.1 35.2 449 19-486 10-485 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 1.5E-47 3.2E-52 367.8 20.5 277 163-450 1-285 (287)
3 PLN03210 Resistant to P. syrin 100.0 8.5E-37 1.8E-41 340.9 31.5 293 156-486 182-492 (1153)
4 PRK04841 transcriptional regul 99.6 2.2E-13 4.7E-18 151.5 24.2 285 155-486 11-322 (903)
5 PRK00411 cdc6 cell division co 99.5 2.2E-11 4.7E-16 122.3 29.7 293 156-474 28-356 (394)
6 TIGR02928 orc1/cdc6 family rep 99.5 3.7E-11 8.1E-16 119.3 26.0 293 157-474 14-348 (365)
7 COG2909 MalT ATP-dependent tra 99.5 9.7E-12 2.1E-16 127.6 21.7 283 153-485 14-327 (894)
8 TIGR03015 pepcterm_ATPase puta 99.4 3E-11 6.5E-16 114.7 23.0 195 166-370 31-242 (269)
9 PF01637 Arch_ATPase: Archaeal 99.4 3.1E-13 6.8E-18 125.3 8.7 202 160-366 1-234 (234)
10 TIGR00635 ruvB Holliday juncti 99.3 1.6E-10 3.4E-15 111.8 21.8 275 157-477 3-290 (305)
11 PF05729 NACHT: NACHT domain 99.3 2.1E-11 4.7E-16 106.6 11.9 151 180-336 1-163 (166)
12 PRK00080 ruvB Holliday junctio 99.3 4.1E-10 8.8E-15 109.8 20.9 278 154-477 21-311 (328)
13 COG2256 MGS1 ATPase related to 99.1 1.2E-09 2.6E-14 103.7 14.3 178 149-361 15-207 (436)
14 PRK13342 recombination factor 99.1 1.3E-09 2.8E-14 109.5 14.1 185 151-370 5-200 (413)
15 PTZ00112 origin recognition co 99.1 5.5E-08 1.2E-12 101.4 25.8 289 157-474 754-1084(1164)
16 PRK07003 DNA polymerase III su 99.1 9.8E-09 2.1E-13 106.2 20.0 190 152-368 10-223 (830)
17 COG3899 Predicted ATPase [Gene 99.1 7.1E-09 1.5E-13 112.2 19.3 265 159-441 1-333 (849)
18 PRK04195 replication factor C 99.0 1E-07 2.2E-12 97.7 22.3 249 153-452 9-274 (482)
19 PRK06893 DNA replication initi 98.9 2E-08 4.3E-13 92.5 14.4 154 178-368 38-205 (229)
20 PRK12402 replication factor C 98.9 3.4E-08 7.5E-13 97.0 16.0 206 154-368 11-228 (337)
21 PF05496 RuvB_N: Holliday junc 98.9 2.2E-08 4.8E-13 89.0 12.8 192 150-371 16-226 (233)
22 PRK14961 DNA polymerase III su 98.9 7.3E-08 1.6E-12 95.1 17.9 198 152-366 10-220 (363)
23 PRK12323 DNA polymerase III su 98.9 2.9E-08 6.3E-13 101.4 15.1 203 152-366 10-225 (700)
24 PRK14949 DNA polymerase III su 98.9 3E-08 6.5E-13 104.6 15.1 189 151-366 9-220 (944)
25 PTZ00202 tuzin; Provisional 98.9 5.1E-07 1.1E-11 87.7 21.9 163 155-336 259-434 (550)
26 COG1474 CDC6 Cdc6-related prot 98.9 3.9E-07 8.5E-12 89.1 21.7 285 157-474 16-332 (366)
27 TIGR03420 DnaA_homol_Hda DnaA 98.9 3.5E-08 7.6E-13 91.0 13.6 177 157-369 14-204 (226)
28 PLN03025 replication factor C 98.9 6.3E-08 1.4E-12 94.0 15.2 187 153-364 8-198 (319)
29 PRK00440 rfc replication facto 98.9 1.2E-07 2.5E-12 92.4 17.2 189 154-368 13-205 (319)
30 PRK06645 DNA polymerase III su 98.9 1.1E-07 2.5E-12 96.5 17.4 200 152-365 15-228 (507)
31 PRK14963 DNA polymerase III su 98.8 1.5E-07 3.2E-12 96.1 17.5 200 152-364 8-215 (504)
32 PF13401 AAA_22: AAA domain; P 98.8 1.8E-08 3.9E-13 84.3 8.5 116 179-304 4-125 (131)
33 PF13173 AAA_14: AAA domain 98.8 8.5E-09 1.8E-13 85.9 6.4 121 179-328 2-127 (128)
34 KOG2028 ATPase related to the 98.8 4.2E-08 9.1E-13 91.7 11.2 180 151-361 131-331 (554)
35 PF13191 AAA_16: AAA ATPase do 98.8 3.7E-08 7.9E-13 87.8 10.2 74 159-234 1-82 (185)
36 PRK14960 DNA polymerase III su 98.8 1.8E-07 3.8E-12 96.0 16.2 184 152-366 9-219 (702)
37 PRK14957 DNA polymerase III su 98.8 2.7E-07 5.8E-12 94.4 16.7 190 152-368 10-223 (546)
38 COG3903 Predicted ATPase [Gene 98.8 2.7E-08 5.9E-13 95.2 8.7 234 178-431 13-256 (414)
39 PRK14956 DNA polymerase III su 98.8 2E-07 4.3E-12 93.0 15.1 199 151-366 11-222 (484)
40 PRK14964 DNA polymerase III su 98.7 4.1E-07 9E-12 91.7 17.2 188 152-366 7-217 (491)
41 PRK05564 DNA polymerase III su 98.7 4.5E-07 9.7E-12 87.9 17.0 176 158-364 4-188 (313)
42 PRK14962 DNA polymerase III su 98.7 3.1E-07 6.7E-12 92.9 16.2 192 152-370 8-223 (472)
43 PRK13341 recombination factor 98.7 1.5E-07 3.3E-12 99.7 14.5 177 151-362 21-213 (725)
44 PRK09112 DNA polymerase III su 98.7 1.1E-06 2.4E-11 85.7 19.0 197 155-366 20-240 (351)
45 PRK08691 DNA polymerase III su 98.7 2.3E-07 5E-12 96.0 14.8 189 152-367 10-221 (709)
46 cd00009 AAA The AAA+ (ATPases 98.7 1.4E-07 3.1E-12 80.1 11.3 126 161-306 1-131 (151)
47 PRK14951 DNA polymerase III su 98.7 4.6E-07 9.9E-12 94.0 16.9 201 152-366 10-225 (618)
48 PF05621 TniB: Bacterial TniB 98.7 1.2E-06 2.5E-11 81.8 17.7 194 164-366 43-261 (302)
49 TIGR02397 dnaX_nterm DNA polym 98.7 8.1E-07 1.8E-11 87.9 17.6 187 153-367 9-219 (355)
50 PRK14958 DNA polymerase III su 98.7 3.9E-07 8.4E-12 93.2 15.5 189 151-366 9-220 (509)
51 PRK07471 DNA polymerase III su 98.7 8.4E-07 1.8E-11 86.9 17.2 198 155-366 16-238 (365)
52 PRK07994 DNA polymerase III su 98.7 3.5E-07 7.5E-12 95.1 15.2 199 152-367 10-221 (647)
53 TIGR02903 spore_lon_C ATP-depe 98.7 6E-07 1.3E-11 94.2 16.3 206 154-369 150-398 (615)
54 TIGR00678 holB DNA polymerase 98.6 1E-06 2.2E-11 78.7 15.1 160 169-362 3-187 (188)
55 PRK05896 DNA polymerase III su 98.6 6.1E-07 1.3E-11 92.0 15.2 200 152-368 10-223 (605)
56 PRK08084 DNA replication initi 98.6 6.7E-07 1.5E-11 82.7 14.3 174 158-366 22-209 (235)
57 PRK14955 DNA polymerase III su 98.6 6.3E-07 1.4E-11 89.5 15.0 204 152-365 10-227 (397)
58 PRK07940 DNA polymerase III su 98.6 1.5E-06 3.3E-11 85.9 17.0 173 157-365 4-212 (394)
59 cd01128 rho_factor Transcripti 98.6 6.6E-08 1.4E-12 89.4 6.7 93 178-271 15-115 (249)
60 PF14516 AAA_35: AAA-like doma 98.6 1.2E-05 2.6E-10 78.3 22.8 205 157-372 10-245 (331)
61 PRK14969 DNA polymerase III su 98.6 8.5E-07 1.9E-11 91.3 15.5 187 153-366 11-221 (527)
62 PRK09087 hypothetical protein; 98.6 6.6E-07 1.4E-11 81.9 13.1 146 178-368 43-197 (226)
63 PRK08727 hypothetical protein; 98.6 1.3E-06 2.8E-11 80.6 14.9 172 157-363 18-201 (233)
64 PRK14970 DNA polymerase III su 98.6 2.1E-06 4.5E-11 85.3 17.2 185 152-363 11-206 (367)
65 PRK14959 DNA polymerase III su 98.6 1.1E-06 2.5E-11 90.5 15.1 203 152-371 10-226 (624)
66 PRK07764 DNA polymerase III su 98.6 1.4E-06 3E-11 93.7 16.2 180 153-363 10-218 (824)
67 PRK09111 DNA polymerase III su 98.6 1.7E-06 3.7E-11 89.9 16.2 202 152-367 18-234 (598)
68 KOG0989 Replication factor C, 98.6 6.2E-07 1.3E-11 82.4 10.9 192 150-361 28-225 (346)
69 PRK08903 DnaA regulatory inact 98.5 1.5E-06 3.3E-11 80.1 13.2 174 157-370 17-203 (227)
70 PRK08451 DNA polymerase III su 98.5 4.4E-06 9.5E-11 85.2 17.2 189 152-367 8-219 (535)
71 PRK14952 DNA polymerase III su 98.5 3.7E-06 8.1E-11 86.9 16.7 200 152-368 7-222 (584)
72 TIGR03345 VI_ClpV1 type VI sec 98.5 1.9E-06 4.2E-11 93.6 15.0 182 155-359 184-389 (852)
73 PRK14971 DNA polymerase III su 98.5 5.5E-06 1.2E-10 86.8 17.6 185 153-365 12-221 (614)
74 PRK14954 DNA polymerase III su 98.5 3.9E-06 8.5E-11 87.4 16.4 201 152-362 10-224 (620)
75 TIGR01242 26Sp45 26S proteasom 98.5 2.4E-06 5.1E-11 84.7 13.9 178 154-360 118-328 (364)
76 PRK09376 rho transcription ter 98.5 6.9E-07 1.5E-11 86.3 9.2 91 179-271 169-268 (416)
77 PRK07133 DNA polymerase III su 98.5 5.6E-06 1.2E-10 86.8 16.6 193 153-365 13-218 (725)
78 PRK14953 DNA polymerase III su 98.5 9.3E-06 2E-10 82.7 17.9 184 153-367 11-221 (486)
79 KOG2227 Pre-initiation complex 98.5 1.1E-05 2.3E-10 78.6 17.0 196 156-361 148-363 (529)
80 PRK03992 proteasome-activating 98.4 3.6E-06 7.8E-11 83.8 14.3 179 155-359 128-336 (389)
81 PRK14950 DNA polymerase III su 98.4 8.1E-06 1.8E-10 85.6 17.5 201 152-368 10-223 (585)
82 PRK14087 dnaA chromosomal repl 98.4 4E-06 8.7E-11 84.8 14.2 169 180-370 142-323 (450)
83 TIGR02639 ClpA ATP-dependent C 98.4 5.1E-06 1.1E-10 89.6 15.8 160 156-337 180-359 (731)
84 PRK06305 DNA polymerase III su 98.4 7.7E-06 1.7E-10 82.8 15.9 186 153-366 12-223 (451)
85 PF00308 Bac_DnaA: Bacterial d 98.4 1E-05 2.2E-10 73.9 15.2 163 179-366 34-208 (219)
86 PRK05563 DNA polymerase III su 98.4 1.6E-05 3.4E-10 82.7 17.7 197 152-365 10-219 (559)
87 PRK05642 DNA replication initi 98.4 1.1E-05 2.4E-10 74.5 15.0 151 180-366 46-208 (234)
88 PRK06647 DNA polymerase III su 98.4 1.8E-05 3.9E-10 82.0 17.7 198 152-366 10-220 (563)
89 PHA02544 44 clamp loader, smal 98.4 4.9E-06 1.1E-10 80.9 13.0 151 152-334 15-171 (316)
90 CHL00095 clpC Clp protease ATP 98.4 4.8E-06 1E-10 90.9 14.0 157 157-335 178-353 (821)
91 PRK14948 DNA polymerase III su 98.4 1.9E-05 4E-10 82.8 17.7 201 153-368 11-224 (620)
92 PRK14965 DNA polymerase III su 98.4 8.7E-06 1.9E-10 85.0 15.3 201 152-369 10-224 (576)
93 COG2255 RuvB Holliday junction 98.3 8.4E-06 1.8E-10 74.4 12.7 188 154-371 22-228 (332)
94 TIGR02881 spore_V_K stage V sp 98.3 4E-06 8.8E-11 78.9 11.1 154 159-337 7-192 (261)
95 TIGR00767 rho transcription te 98.3 1.4E-06 3E-11 84.6 7.8 93 178-271 167-267 (415)
96 KOG2543 Origin recognition com 98.3 2E-05 4.4E-10 74.8 15.0 204 157-369 5-229 (438)
97 PRK07399 DNA polymerase III su 98.3 8.8E-05 1.9E-09 71.4 19.5 197 158-367 4-222 (314)
98 PRK11331 5-methylcytosine-spec 98.3 4.2E-06 9E-11 82.7 10.3 110 157-271 174-284 (459)
99 TIGR03689 pup_AAA proteasome A 98.3 1.9E-05 4.2E-10 80.1 14.5 165 154-338 178-380 (512)
100 TIGR02880 cbbX_cfxQ probable R 98.2 2.2E-05 4.8E-10 74.7 13.2 132 181-337 60-209 (284)
101 TIGR03346 chaperone_ClpB ATP-d 98.2 4E-05 8.6E-10 84.1 16.1 158 156-336 171-349 (852)
102 CHL00181 cbbX CbbX; Provisiona 98.2 7.8E-05 1.7E-09 70.9 15.8 133 180-337 60-210 (287)
103 PRK10865 protein disaggregatio 98.1 2.1E-05 4.6E-10 85.9 13.0 158 156-336 176-354 (857)
104 PRK11034 clpA ATP-dependent Cl 98.1 4E-06 8.6E-11 89.5 7.2 158 157-336 185-362 (758)
105 TIGR00362 DnaA chromosomal rep 98.1 6.5E-05 1.4E-09 75.6 15.6 161 180-365 137-309 (405)
106 PRK00149 dnaA chromosomal repl 98.1 5E-05 1.1E-09 77.4 14.8 181 180-385 149-349 (450)
107 KOG0991 Replication factor C, 98.1 4.4E-05 9.6E-10 67.6 12.2 104 153-271 22-125 (333)
108 PTZ00454 26S protease regulato 98.1 5.3E-05 1.1E-09 75.3 14.3 184 154-360 141-351 (398)
109 PF05673 DUF815: Protein of un 98.1 0.00012 2.7E-09 66.3 15.3 52 155-206 24-79 (249)
110 PRK14088 dnaA chromosomal repl 98.1 5E-05 1.1E-09 76.8 14.2 183 179-385 130-332 (440)
111 COG1373 Predicted ATPase (AAA+ 98.1 3.7E-05 8E-10 76.6 12.5 137 162-331 21-162 (398)
112 PRK05707 DNA polymerase III su 98.1 0.00014 3.1E-09 70.3 15.7 155 179-366 22-203 (328)
113 COG3267 ExeA Type II secretory 98.1 0.00035 7.7E-09 63.2 16.5 195 165-369 38-248 (269)
114 PF10443 RNA12: RNA12 protein; 98.1 0.00037 8E-09 68.2 18.0 195 163-375 1-288 (431)
115 TIGR01241 FtsH_fam ATP-depende 98.0 9.3E-05 2E-09 76.4 14.8 209 154-385 51-295 (495)
116 PRK06620 hypothetical protein; 98.0 2.8E-05 6.1E-10 70.6 9.7 135 180-362 45-185 (214)
117 PTZ00361 26 proteosome regulat 98.0 9.2E-05 2E-09 74.1 14.1 183 155-360 180-389 (438)
118 PRK14086 dnaA chromosomal repl 98.0 0.00012 2.5E-09 75.6 15.0 181 180-385 315-515 (617)
119 PRK08058 DNA polymerase III su 98.0 0.00016 3.5E-09 70.3 15.2 146 159-334 6-180 (329)
120 COG0466 Lon ATP-dependent Lon 98.0 0.0012 2.5E-08 68.2 20.7 168 157-337 322-509 (782)
121 PRK10787 DNA-binding ATP-depen 98.0 0.0013 2.7E-08 71.2 22.4 168 157-337 321-507 (784)
122 PRK12422 chromosomal replicati 98.0 0.00025 5.4E-09 71.7 16.0 154 180-360 142-307 (445)
123 TIGR00602 rad24 checkpoint pro 97.9 4.7E-05 1E-09 79.4 10.4 54 151-204 77-135 (637)
124 CHL00176 ftsH cell division pr 97.9 0.00027 5.9E-09 74.3 15.9 174 156-358 181-386 (638)
125 TIGR00763 lon ATP-dependent pr 97.9 0.0015 3.2E-08 71.2 21.7 166 157-336 319-505 (775)
126 PRK08769 DNA polymerase III su 97.9 0.00078 1.7E-08 64.7 17.4 173 165-366 11-208 (319)
127 PRK06871 DNA polymerase III su 97.9 0.00071 1.5E-08 65.1 16.5 177 166-363 10-200 (325)
128 CHL00195 ycf46 Ycf46; Provisio 97.9 0.00017 3.7E-09 73.3 12.5 181 157-359 227-428 (489)
129 PRK06090 DNA polymerase III su 97.8 0.0018 3.9E-08 62.2 18.6 165 165-366 10-201 (319)
130 COG1222 RPT1 ATP-dependent 26S 97.8 0.00056 1.2E-08 64.8 14.2 202 153-385 146-392 (406)
131 smart00382 AAA ATPases associa 97.8 8.3E-05 1.8E-09 62.4 8.1 89 180-272 3-91 (148)
132 PF13177 DNA_pol3_delta2: DNA 97.8 0.00019 4.1E-09 62.2 10.0 137 162-324 1-162 (162)
133 COG0593 DnaA ATPase involved i 97.8 0.0033 7.2E-08 61.9 19.4 184 179-388 113-316 (408)
134 PF00004 AAA: ATPase family as 97.8 3.7E-05 8E-10 64.1 5.1 69 182-271 1-70 (132)
135 PRK08116 hypothetical protein; 97.8 0.00023 5E-09 67.0 10.8 103 180-305 115-221 (268)
136 PRK12608 transcription termina 97.7 0.00031 6.8E-09 68.1 11.5 103 168-271 121-232 (380)
137 TIGR02640 gas_vesic_GvpN gas v 97.7 0.0011 2.4E-08 62.4 14.1 58 164-228 8-65 (262)
138 PRK10536 hypothetical protein; 97.7 0.00091 2E-08 61.5 12.7 58 155-214 52-109 (262)
139 KOG0733 Nuclear AAA ATPase (VC 97.7 0.0013 2.8E-08 66.4 14.7 94 157-271 189-294 (802)
140 TIGR01243 CDC48 AAA family ATP 97.6 0.00077 1.7E-08 73.1 14.2 176 155-360 175-381 (733)
141 PRK08118 topology modulation p 97.6 3.6E-05 7.9E-10 67.0 2.8 35 180-214 2-37 (167)
142 PHA00729 NTP-binding motif con 97.6 0.0004 8.6E-09 62.7 9.5 36 169-204 7-42 (226)
143 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00063 1.4E-08 74.4 12.8 107 157-271 565-680 (852)
144 PF04665 Pox_A32: Poxvirus A32 97.6 0.00014 3E-09 66.4 6.5 36 180-217 14-49 (241)
145 COG2812 DnaX DNA polymerase II 97.6 0.00091 2E-08 67.7 12.8 193 152-361 10-215 (515)
146 PF00448 SRP54: SRP54-type pro 97.6 0.0006 1.3E-08 60.9 10.4 89 179-269 1-93 (196)
147 PRK06964 DNA polymerase III su 97.6 0.0038 8.2E-08 60.6 16.6 92 258-366 131-225 (342)
148 TIGR01243 CDC48 AAA family ATP 97.6 0.0014 2.9E-08 71.2 15.1 175 157-360 452-657 (733)
149 PRK07993 DNA polymerase III su 97.6 0.0037 8E-08 60.8 16.4 165 165-363 9-201 (334)
150 COG0542 clpA ATP-binding subun 97.6 0.00023 4.9E-09 75.0 8.3 158 156-335 168-345 (786)
151 KOG0741 AAA+-type ATPase [Post 97.6 0.0031 6.7E-08 62.7 15.3 166 178-371 537-717 (744)
152 TIGR02639 ClpA ATP-dependent C 97.5 0.00071 1.5E-08 73.2 11.9 103 158-271 454-565 (731)
153 PTZ00494 tuzin-like protein; P 97.5 0.022 4.7E-07 56.1 20.5 161 157-336 370-544 (664)
154 PRK08181 transposase; Validate 97.5 0.00039 8.4E-09 65.2 8.4 80 171-271 100-179 (269)
155 TIGR02902 spore_lonB ATP-depen 97.5 0.00065 1.4E-08 70.5 10.9 51 154-204 61-111 (531)
156 KOG2004 Mitochondrial ATP-depe 97.5 0.0042 9.2E-08 64.0 16.0 166 157-337 410-597 (906)
157 TIGR02237 recomb_radB DNA repa 97.5 0.00051 1.1E-08 62.3 9.0 88 179-270 12-108 (209)
158 COG1223 Predicted ATPase (AAA+ 97.5 0.0011 2.4E-08 60.0 10.5 181 156-359 119-318 (368)
159 TIGR02012 tigrfam_recA protein 97.5 0.0005 1.1E-08 65.8 9.0 87 178-271 54-145 (321)
160 KOG2228 Origin recognition com 97.5 0.0054 1.2E-07 57.8 15.3 171 157-337 23-220 (408)
161 KOG2035 Replication factor C, 97.5 0.0017 3.6E-08 59.4 11.6 230 157-411 12-282 (351)
162 KOG0730 AAA+-type ATPase [Post 97.4 0.0025 5.3E-08 65.2 13.6 174 157-359 433-636 (693)
163 TIGR03346 chaperone_ClpB ATP-d 97.4 0.0021 4.5E-08 70.7 14.2 107 157-271 564-679 (852)
164 cd00983 recA RecA is a bacter 97.4 0.00063 1.4E-08 65.2 8.8 85 179-270 55-144 (325)
165 PF07693 KAP_NTPase: KAP famil 97.4 0.012 2.5E-07 57.4 18.1 43 164-206 2-47 (325)
166 PRK09354 recA recombinase A; P 97.4 0.00076 1.6E-08 65.2 9.3 86 179-271 60-150 (349)
167 PRK12377 putative replication 97.4 0.0017 3.7E-08 60.1 11.2 74 179-270 101-174 (248)
168 PLN00020 ribulose bisphosphate 97.4 0.0054 1.2E-07 59.1 14.5 29 177-205 146-174 (413)
169 KOG0731 AAA+-type ATPase conta 97.4 0.0029 6.3E-08 66.5 13.7 179 157-363 310-521 (774)
170 PRK04132 replication factor C 97.4 0.0044 9.4E-08 66.9 15.4 160 184-368 569-733 (846)
171 cd01393 recA_like RecA is a b 97.4 0.0013 2.8E-08 60.5 10.2 91 179-270 19-125 (226)
172 COG0470 HolB ATPase involved i 97.4 0.002 4.3E-08 62.8 12.0 141 160-325 3-170 (325)
173 COG1484 DnaC DNA replication p 97.4 0.0015 3.1E-08 61.0 10.3 82 169-270 97-178 (254)
174 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00092 2E-08 61.9 9.0 91 179-270 19-126 (235)
175 PRK10865 protein disaggregatio 97.3 0.002 4.2E-08 70.8 12.3 107 157-271 567-682 (857)
176 PRK04296 thymidine kinase; Pro 97.3 0.00043 9.3E-09 61.7 5.6 111 180-306 3-117 (190)
177 PRK11034 clpA ATP-dependent Cl 97.3 0.0022 4.7E-08 68.9 11.8 103 158-271 458-569 (758)
178 COG0542 clpA ATP-binding subun 97.3 0.012 2.5E-07 62.5 16.8 106 157-271 490-605 (786)
179 cd01120 RecA-like_NTPases RecA 97.3 0.003 6.6E-08 54.4 10.6 40 181-222 1-40 (165)
180 PRK00771 signal recognition pa 97.2 0.016 3.5E-07 58.2 16.8 88 178-269 94-185 (437)
181 PF13207 AAA_17: AAA domain; P 97.2 0.0003 6.5E-09 57.7 3.8 23 181-203 1-23 (121)
182 KOG1969 DNA replication checkp 97.2 0.00067 1.5E-08 69.8 7.0 74 178-271 325-399 (877)
183 PRK06526 transposase; Provisio 97.2 0.00061 1.3E-08 63.5 6.1 74 179-271 98-171 (254)
184 TIGR03877 thermo_KaiC_1 KaiC d 97.2 0.0048 1E-07 57.2 11.9 88 178-270 20-137 (237)
185 KOG1514 Origin recognition com 97.2 0.031 6.8E-07 57.8 18.3 201 157-371 395-626 (767)
186 KOG0735 AAA+-type ATPase [Post 97.2 0.0019 4.1E-08 66.4 9.5 161 179-359 431-608 (952)
187 smart00763 AAA_PrkA PrkA AAA d 97.2 0.00066 1.4E-08 65.6 6.1 47 159-205 52-104 (361)
188 PRK09361 radB DNA repair and r 97.2 0.0028 6.1E-08 58.2 10.2 86 179-269 23-117 (225)
189 PRK14722 flhF flagellar biosyn 97.2 0.0026 5.5E-08 62.3 10.1 89 179-270 137-226 (374)
190 KOG0739 AAA+-type ATPase [Post 97.2 0.0069 1.5E-07 56.0 12.1 176 159-360 134-335 (439)
191 TIGR03499 FlhF flagellar biosy 97.2 0.0033 7.2E-08 59.8 10.6 88 178-268 193-281 (282)
192 PRK06696 uridine kinase; Valid 97.1 0.00083 1.8E-08 61.6 6.0 45 162-206 2-49 (223)
193 PRK07952 DNA replication prote 97.1 0.0054 1.2E-07 56.7 11.3 89 166-271 84-174 (244)
194 TIGR02238 recomb_DMC1 meiotic 97.1 0.0022 4.7E-08 61.7 9.0 91 179-270 96-202 (313)
195 PRK08939 primosomal protein Dn 97.1 0.0048 1E-07 59.2 11.1 91 162-271 135-229 (306)
196 KOG0733 Nuclear AAA ATPase (VC 97.1 0.012 2.6E-07 59.7 13.9 132 179-337 545-693 (802)
197 PRK06835 DNA replication prote 97.1 0.0026 5.7E-08 61.5 9.2 36 180-217 184-219 (329)
198 PRK07261 topology modulation p 97.1 0.0012 2.5E-08 57.9 6.1 66 181-270 2-68 (171)
199 PRK10867 signal recognition pa 97.1 0.059 1.3E-06 54.1 18.9 29 178-206 99-127 (433)
200 PRK09183 transposase/IS protei 97.1 0.00087 1.9E-08 62.8 5.7 73 180-270 103-175 (259)
201 PRK10733 hflB ATP-dependent me 97.1 0.0079 1.7E-07 64.0 13.2 173 157-358 151-355 (644)
202 PRK09270 nucleoside triphospha 97.1 0.0085 1.9E-07 55.2 11.9 30 177-206 31-60 (229)
203 PRK05541 adenylylsulfate kinas 97.0 0.0021 4.5E-08 56.6 7.3 36 178-215 6-41 (176)
204 cd01133 F1-ATPase_beta F1 ATP 97.0 0.0065 1.4E-07 56.7 10.8 92 179-271 69-175 (274)
205 COG2607 Predicted ATPase (AAA+ 97.0 0.0083 1.8E-07 53.9 10.8 52 155-206 57-112 (287)
206 COG0464 SpoVK ATPases of the A 97.0 0.015 3.2E-07 60.3 14.6 160 178-358 275-445 (494)
207 PLN03187 meiotic recombination 97.0 0.0065 1.4E-07 59.0 10.7 91 179-270 126-232 (344)
208 PF01695 IstB_IS21: IstB-like 97.0 0.0043 9.2E-08 54.6 8.7 74 179-271 47-120 (178)
209 CHL00095 clpC Clp protease ATP 97.0 0.0027 5.9E-08 69.6 9.0 107 157-271 508-623 (821)
210 COG0541 Ffh Signal recognition 97.0 0.19 4.2E-06 49.5 20.4 89 178-268 99-191 (451)
211 TIGR01425 SRP54_euk signal rec 97.0 0.1 2.3E-06 52.1 19.1 38 178-217 99-136 (429)
212 KOG0734 AAA+-type ATPase conta 96.9 0.0025 5.3E-08 63.4 7.3 94 157-271 303-408 (752)
213 PRK12726 flagellar biosynthesi 96.9 0.0085 1.8E-07 58.3 10.7 91 178-270 205-296 (407)
214 cd01394 radB RadB. The archaea 96.9 0.0077 1.7E-07 55.0 10.1 43 178-222 18-60 (218)
215 PRK12723 flagellar biosynthesi 96.9 0.012 2.5E-07 58.2 11.9 90 178-270 173-265 (388)
216 PF08423 Rad51: Rad51; InterP 96.9 0.0065 1.4E-07 56.8 9.6 90 179-269 38-143 (256)
217 PRK08699 DNA polymerase III su 96.9 0.015 3.3E-07 56.3 12.5 60 295-363 143-203 (325)
218 PRK11889 flhF flagellar biosyn 96.9 0.0084 1.8E-07 58.6 10.5 91 178-270 240-331 (436)
219 TIGR02239 recomb_RAD51 DNA rep 96.9 0.0071 1.5E-07 58.4 10.1 92 178-270 95-202 (316)
220 PRK08533 flagellar accessory p 96.9 0.01 2.2E-07 54.6 10.7 87 179-270 24-128 (230)
221 PF03215 Rad17: Rad17 cell cyc 96.9 0.0051 1.1E-07 63.2 9.6 57 156-216 17-78 (519)
222 COG1066 Sms Predicted ATP-depe 96.9 0.0028 6.1E-08 61.3 7.0 87 179-271 93-180 (456)
223 PRK04328 hypothetical protein; 96.9 0.006 1.3E-07 56.9 9.1 88 178-270 22-139 (249)
224 cd03115 SRP The signal recogni 96.9 0.0081 1.8E-07 52.6 9.5 87 181-270 2-93 (173)
225 PF00154 RecA: recA bacterial 96.8 0.012 2.6E-07 56.4 11.0 86 179-271 53-143 (322)
226 PLN03186 DNA repair protein RA 96.8 0.0053 1.1E-07 59.7 8.8 91 179-270 123-229 (342)
227 TIGR03878 thermo_KaiC_2 KaiC d 96.8 0.007 1.5E-07 56.8 9.3 90 178-269 35-141 (259)
228 KOG0736 Peroxisome assembly fa 96.8 0.0059 1.3E-07 63.5 9.2 101 150-271 664-776 (953)
229 PRK06921 hypothetical protein; 96.8 0.008 1.7E-07 56.5 9.6 72 178-269 116-187 (266)
230 PTZ00035 Rad51 protein; Provis 96.8 0.013 2.8E-07 57.1 11.3 92 178-270 117-224 (337)
231 PRK06067 flagellar accessory p 96.8 0.011 2.3E-07 54.7 10.4 87 178-269 24-130 (234)
232 KOG0743 AAA+-type ATPase [Post 96.8 0.29 6.2E-06 48.5 20.2 177 164-373 211-417 (457)
233 COG1875 NYN ribonuclease and A 96.8 0.0076 1.6E-07 57.5 9.1 52 161-212 227-279 (436)
234 PRK12727 flagellar biosynthesi 96.8 0.0081 1.8E-07 61.0 9.9 88 179-269 350-438 (559)
235 PRK05703 flhF flagellar biosyn 96.8 0.013 2.9E-07 58.9 11.5 88 179-269 221-309 (424)
236 PRK04301 radA DNA repair and r 96.8 0.0095 2.1E-07 57.8 10.1 92 178-270 101-209 (317)
237 TIGR02236 recomb_radA DNA repa 96.8 0.0097 2.1E-07 57.6 10.2 57 179-236 95-155 (310)
238 PRK13531 regulatory ATPase Rav 96.7 0.0024 5.2E-08 64.1 5.8 51 158-210 20-70 (498)
239 COG1618 Predicted nucleotide k 96.7 0.0023 4.9E-08 53.8 4.7 28 180-207 6-33 (179)
240 PRK14974 cell division protein 96.7 0.025 5.3E-07 54.9 12.5 91 178-271 139-234 (336)
241 PRK09519 recA DNA recombinatio 96.7 0.0082 1.8E-07 64.1 10.0 86 178-270 59-149 (790)
242 PF10236 DAP3: Mitochondrial r 96.7 0.077 1.7E-06 51.1 15.9 47 317-363 258-306 (309)
243 PRK06547 hypothetical protein; 96.7 0.0025 5.4E-08 55.7 5.1 35 169-203 5-39 (172)
244 PF07728 AAA_5: AAA domain (dy 96.7 0.0045 9.7E-08 52.0 6.5 43 182-229 2-44 (139)
245 PRK15455 PrkA family serine pr 96.7 0.0025 5.5E-08 64.9 5.6 49 157-205 75-129 (644)
246 cd02025 PanK Pantothenate kina 96.7 0.012 2.6E-07 53.7 9.7 41 181-221 1-41 (220)
247 cd03281 ABC_MSH5_euk MutS5 hom 96.7 0.0013 2.9E-08 59.6 3.4 24 179-202 29-52 (213)
248 cd01124 KaiC KaiC is a circadi 96.7 0.014 3E-07 51.8 9.9 43 182-228 2-44 (187)
249 PRK07132 DNA polymerase III su 96.7 0.1 2.2E-06 49.9 16.0 167 167-365 5-184 (299)
250 TIGR00554 panK_bact pantothena 96.7 0.015 3.3E-07 55.1 10.4 45 177-221 60-104 (290)
251 cd01131 PilT Pilus retraction 96.7 0.0027 5.9E-08 57.0 5.1 110 180-308 2-112 (198)
252 cd01121 Sms Sms (bacterial rad 96.7 0.0068 1.5E-07 59.8 8.2 84 179-271 82-170 (372)
253 COG0468 RecA RecA/RadA recombi 96.6 0.017 3.7E-07 54.2 10.3 91 178-270 59-152 (279)
254 TIGR00064 ftsY signal recognit 96.6 0.023 5E-07 53.6 11.2 90 178-270 71-165 (272)
255 TIGR00959 ffh signal recogniti 96.6 0.017 3.7E-07 57.9 10.6 59 178-237 98-157 (428)
256 COG1102 Cmk Cytidylate kinase 96.6 0.003 6.5E-08 53.1 4.3 44 181-237 2-45 (179)
257 PRK12724 flagellar biosynthesi 96.6 0.012 2.6E-07 58.3 9.1 85 179-268 223-308 (432)
258 KOG0728 26S proteasome regulat 96.5 0.063 1.4E-06 48.5 12.4 150 160-336 149-331 (404)
259 PF13238 AAA_18: AAA domain; P 96.5 0.0026 5.5E-08 52.5 3.6 22 182-203 1-22 (129)
260 COG1419 FlhF Flagellar GTP-bin 96.5 0.037 8E-07 54.1 11.7 89 178-269 202-291 (407)
261 TIGR02858 spore_III_AA stage I 96.5 0.0046 9.9E-08 58.1 5.4 115 176-308 108-232 (270)
262 PF06745 KaiC: KaiC; InterPro 96.5 0.0061 1.3E-07 56.0 6.2 88 178-269 18-125 (226)
263 PRK13765 ATP-dependent proteas 96.5 0.0067 1.5E-07 63.8 7.1 77 155-235 28-104 (637)
264 PF05659 RPW8: Arabidopsis bro 96.4 0.055 1.2E-06 45.6 11.2 110 5-133 6-115 (147)
265 cd01122 GP4d_helicase GP4d_hel 96.4 0.027 5.9E-07 53.3 10.7 52 179-233 30-81 (271)
266 PF00485 PRK: Phosphoribulokin 96.4 0.003 6.5E-08 56.5 3.8 26 181-206 1-26 (194)
267 COG1703 ArgK Putative periplas 96.4 0.006 1.3E-07 56.7 5.7 64 168-231 38-103 (323)
268 PF13481 AAA_25: AAA domain; P 96.4 0.023 5.1E-07 50.6 9.5 41 180-220 33-81 (193)
269 TIGR03881 KaiC_arch_4 KaiC dom 96.4 0.037 7.9E-07 50.9 11.0 41 178-220 19-59 (229)
270 KOG0744 AAA+-type ATPase [Post 96.4 0.012 2.7E-07 55.1 7.5 83 179-271 177-262 (423)
271 PF06309 Torsin: Torsin; Inte 96.4 0.025 5.5E-07 45.9 8.5 48 158-205 25-79 (127)
272 PF13671 AAA_33: AAA domain; P 96.4 0.0033 7.1E-08 53.1 3.7 23 181-203 1-23 (143)
273 cd01135 V_A-ATPase_B V/A-type 96.4 0.027 5.9E-07 52.5 9.9 93 179-271 69-178 (276)
274 PRK14723 flhF flagellar biosyn 96.4 0.04 8.6E-07 58.8 12.2 88 179-269 185-273 (767)
275 COG2884 FtsE Predicted ATPase 96.4 0.01 2.2E-07 51.5 6.3 27 179-205 28-54 (223)
276 PRK14721 flhF flagellar biosyn 96.3 0.037 7.9E-07 55.3 11.1 88 179-269 191-279 (420)
277 cd02019 NK Nucleoside/nucleoti 96.3 0.0036 7.9E-08 45.5 3.1 23 181-203 1-23 (69)
278 PRK06995 flhF flagellar biosyn 96.3 0.026 5.7E-07 57.2 10.3 88 179-269 256-344 (484)
279 PF03308 ArgK: ArgK protein; 96.3 0.011 2.4E-07 54.2 6.8 61 167-227 15-77 (266)
280 PF02562 PhoH: PhoH-like prote 96.3 0.0063 1.4E-07 54.4 5.2 52 163-216 5-56 (205)
281 PRK07667 uridine kinase; Provi 96.3 0.01 2.2E-07 53.1 6.5 39 168-206 4-44 (193)
282 PRK05480 uridine/cytidine kina 96.3 0.0041 8.9E-08 56.4 4.0 27 177-203 4-30 (209)
283 TIGR01069 mutS2 MutS2 family p 96.3 0.0043 9.4E-08 67.0 4.7 195 178-387 321-522 (771)
284 COG0563 Adk Adenylate kinase a 96.3 0.008 1.7E-07 52.8 5.6 24 181-204 2-25 (178)
285 PF01583 APS_kinase: Adenylyls 96.3 0.0067 1.5E-07 51.6 4.9 36 179-216 2-37 (156)
286 PTZ00301 uridine kinase; Provi 96.3 0.0073 1.6E-07 54.6 5.4 27 179-205 3-29 (210)
287 PRK12597 F0F1 ATP synthase sub 96.3 0.031 6.8E-07 56.3 10.3 92 179-271 143-249 (461)
288 PRK06762 hypothetical protein; 96.3 0.0042 9.2E-08 54.0 3.7 25 179-203 2-26 (166)
289 PRK08233 hypothetical protein; 96.2 0.0041 8.9E-08 54.9 3.6 26 179-204 3-28 (182)
290 PF08433 KTI12: Chromatin asso 96.2 0.0057 1.2E-07 57.5 4.6 26 180-205 2-27 (270)
291 PF03205 MobB: Molybdopterin g 96.2 0.012 2.5E-07 49.6 6.0 39 180-219 1-39 (140)
292 PRK05917 DNA polymerase III su 96.2 0.14 3E-06 48.5 13.7 39 166-204 5-44 (290)
293 PF13245 AAA_19: Part of AAA d 96.2 0.02 4.3E-07 42.4 6.5 26 178-203 9-34 (76)
294 TIGR01817 nifA Nif-specific re 96.2 0.068 1.5E-06 55.9 13.0 50 155-204 193-244 (534)
295 TIGR02655 circ_KaiC circadian 96.2 0.017 3.7E-07 59.4 8.3 88 178-270 262-364 (484)
296 cd00984 DnaB_C DnaB helicase C 96.2 0.064 1.4E-06 49.8 11.5 49 180-231 14-62 (242)
297 TIGR00764 lon_rel lon-related 96.2 0.014 3.1E-07 61.4 7.8 77 155-235 15-91 (608)
298 cd02027 APSK Adenosine 5'-phos 96.2 0.024 5.3E-07 48.2 7.9 25 181-205 1-25 (149)
299 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.026 5.5E-07 48.3 7.9 117 180-307 3-140 (159)
300 PRK12678 transcription termina 96.2 0.011 2.3E-07 60.3 6.3 91 179-271 416-515 (672)
301 COG0194 Gmk Guanylate kinase [ 96.2 0.023 4.9E-07 49.3 7.4 25 179-203 4-28 (191)
302 PRK11823 DNA repair protein Ra 96.2 0.017 3.7E-07 58.6 7.9 83 179-270 80-167 (446)
303 COG3640 CooC CO dehydrogenase 96.1 0.014 3E-07 52.4 6.2 51 181-239 2-52 (255)
304 TIGR00235 udk uridine kinase. 96.1 0.0052 1.1E-07 55.7 3.8 28 177-204 4-31 (207)
305 PRK03839 putative kinase; Prov 96.1 0.0052 1.1E-07 54.3 3.6 24 181-204 2-25 (180)
306 PF00910 RNA_helicase: RNA hel 96.1 0.0046 9.9E-08 49.4 2.9 25 182-206 1-25 (107)
307 TIGR01360 aden_kin_iso1 adenyl 96.1 0.0057 1.2E-07 54.3 3.8 26 178-203 2-27 (188)
308 PRK05439 pantothenate kinase; 96.1 0.068 1.5E-06 51.1 11.3 45 177-221 84-128 (311)
309 TIGR03305 alt_F1F0_F1_bet alte 96.1 0.041 8.9E-07 55.2 10.1 92 179-271 138-244 (449)
310 TIGR00416 sms DNA repair prote 96.1 0.027 5.9E-07 57.2 9.1 84 178-270 93-181 (454)
311 PRK00409 recombination and DNA 96.1 0.0068 1.5E-07 65.7 5.0 193 178-387 326-527 (782)
312 PRK05342 clpX ATP-dependent pr 96.1 0.016 3.4E-07 58.0 7.1 47 157-203 70-132 (412)
313 COG4608 AppF ABC-type oligopep 96.1 0.02 4.4E-07 52.8 7.1 123 178-310 38-175 (268)
314 KOG1532 GTPase XAB1, interacts 96.1 0.0082 1.8E-07 54.8 4.5 62 178-239 18-88 (366)
315 PRK09280 F0F1 ATP synthase sub 96.1 0.056 1.2E-06 54.4 10.8 92 179-271 144-250 (463)
316 PRK04040 adenylate kinase; Pro 96.0 0.0064 1.4E-07 54.0 3.7 26 179-204 2-27 (188)
317 KOG0737 AAA+-type ATPase [Post 96.0 0.096 2.1E-06 50.2 11.5 28 178-205 126-153 (386)
318 PF12775 AAA_7: P-loop contain 96.0 0.0051 1.1E-07 58.0 3.1 90 168-271 23-112 (272)
319 TIGR03575 selen_PSTK_euk L-ser 96.0 0.038 8.3E-07 53.5 9.1 35 182-217 2-36 (340)
320 PRK15429 formate hydrogenlyase 96.0 0.16 3.5E-06 54.9 14.9 61 157-219 375-437 (686)
321 COG0714 MoxR-like ATPases [Gen 96.0 0.018 4E-07 56.2 7.0 65 159-230 25-89 (329)
322 COG1428 Deoxynucleoside kinase 96.0 0.014 3E-07 51.7 5.3 48 179-231 4-51 (216)
323 COG0467 RAD55 RecA-superfamily 95.9 0.013 2.7E-07 55.2 5.6 42 178-221 22-63 (260)
324 cd00544 CobU Adenosylcobinamid 95.9 0.033 7.1E-07 48.5 7.7 81 182-269 2-83 (169)
325 TIGR00150 HI0065_YjeE ATPase, 95.9 0.015 3.3E-07 48.1 5.3 40 166-205 7-48 (133)
326 PRK00131 aroK shikimate kinase 95.9 0.0082 1.8E-07 52.5 4.0 25 179-203 4-28 (175)
327 PRK00625 shikimate kinase; Pro 95.9 0.007 1.5E-07 52.9 3.4 24 181-204 2-25 (173)
328 KOG3347 Predicted nucleotide k 95.9 0.016 3.4E-07 48.1 5.1 70 179-258 7-76 (176)
329 PRK10751 molybdopterin-guanine 95.9 0.0099 2.1E-07 51.6 4.2 29 178-206 5-33 (173)
330 PF13086 AAA_11: AAA domain; P 95.9 0.018 4E-07 52.8 6.4 34 168-203 8-41 (236)
331 PF00006 ATP-synt_ab: ATP synt 95.9 0.03 6.4E-07 50.7 7.4 87 180-270 16-116 (215)
332 cd01125 repA Hexameric Replica 95.9 0.05 1.1E-06 50.5 9.1 89 181-269 3-121 (239)
333 PRK09435 membrane ATPase/prote 95.9 0.11 2.4E-06 50.3 11.6 39 168-206 43-83 (332)
334 CHL00081 chlI Mg-protoporyphyr 95.9 0.013 2.8E-07 57.0 5.2 50 156-205 15-64 (350)
335 TIGR02030 BchI-ChlI magnesium 95.8 0.016 3.6E-07 56.2 5.9 47 157-203 3-49 (337)
336 cd03247 ABCC_cytochrome_bd The 95.8 0.022 4.7E-07 50.2 6.2 25 179-203 28-52 (178)
337 TIGR02322 phosphon_PhnN phosph 95.8 0.0079 1.7E-07 53.0 3.4 25 180-204 2-26 (179)
338 PRK08927 fliI flagellum-specif 95.8 0.061 1.3E-06 53.8 9.8 90 178-271 157-260 (442)
339 KOG0729 26S proteasome regulat 95.8 0.069 1.5E-06 48.7 9.1 94 156-270 175-281 (435)
340 TIGR01359 UMP_CMP_kin_fam UMP- 95.8 0.0072 1.6E-07 53.5 3.0 23 181-203 1-23 (183)
341 PF13479 AAA_24: AAA domain 95.8 0.038 8.3E-07 50.2 7.8 31 180-220 4-34 (213)
342 COG0572 Udk Uridine kinase [Nu 95.8 0.009 2E-07 53.4 3.5 28 178-205 7-34 (218)
343 TIGR00708 cobA cob(I)alamin ad 95.8 0.053 1.2E-06 47.0 8.1 117 179-307 5-142 (173)
344 PF02374 ArsA_ATPase: Anion-tr 95.8 0.022 4.7E-07 54.7 6.4 47 180-228 2-48 (305)
345 TIGR01039 atpD ATP synthase, F 95.8 0.098 2.1E-06 52.5 11.1 92 179-271 143-249 (461)
346 TIGR00390 hslU ATP-dependent p 95.8 0.037 8.1E-07 54.7 7.9 49 157-205 11-73 (441)
347 PF03266 NTPase_1: NTPase; In 95.8 0.01 2.3E-07 51.5 3.8 24 182-205 2-25 (168)
348 cd00227 CPT Chloramphenicol (C 95.8 0.0097 2.1E-07 52.3 3.7 24 180-203 3-26 (175)
349 PF03193 DUF258: Protein of un 95.7 0.017 3.6E-07 49.5 4.9 34 166-202 25-58 (161)
350 TIGR03600 phage_DnaB phage rep 95.7 0.68 1.5E-05 46.9 17.4 53 179-234 194-246 (421)
351 KOG0735 AAA+-type ATPase [Post 95.7 0.058 1.3E-06 55.9 9.4 174 159-361 668-871 (952)
352 cd02023 UMPK Uridine monophosp 95.7 0.0076 1.6E-07 54.1 3.0 23 181-203 1-23 (198)
353 PF05970 PIF1: PIF1-like helic 95.7 0.029 6.3E-07 55.5 7.2 42 165-206 8-49 (364)
354 TIGR01650 PD_CobS cobaltochela 95.7 0.035 7.6E-07 53.2 7.3 62 160-228 47-108 (327)
355 PF07726 AAA_3: ATPase family 95.7 0.01 2.2E-07 48.3 3.2 41 182-227 2-42 (131)
356 cd02028 UMPK_like Uridine mono 95.7 0.016 3.4E-07 51.1 4.7 25 181-205 1-25 (179)
357 PRK10416 signal recognition pa 95.7 0.23 4.9E-06 48.0 13.0 38 178-217 113-150 (318)
358 cd02020 CMPK Cytidine monophos 95.7 0.0094 2E-07 50.5 3.2 24 181-204 1-24 (147)
359 PRK00889 adenylylsulfate kinas 95.7 0.013 2.8E-07 51.4 4.1 29 178-206 3-31 (175)
360 KOG1051 Chaperone HSP104 and r 95.7 0.078 1.7E-06 57.3 10.5 102 159-271 563-672 (898)
361 PRK06851 hypothetical protein; 95.7 0.16 3.5E-06 49.7 12.0 41 176-217 211-251 (367)
362 PRK08149 ATP synthase SpaL; Va 95.7 0.03 6.4E-07 55.9 7.0 90 178-271 150-253 (428)
363 PRK09302 circadian clock prote 95.7 0.087 1.9E-06 54.8 10.9 87 179-270 273-374 (509)
364 TIGR00382 clpX endopeptidase C 95.7 0.043 9.3E-07 54.7 8.1 48 157-204 76-141 (413)
365 PRK08972 fliI flagellum-specif 95.6 0.05 1.1E-06 54.3 8.5 90 178-271 161-264 (444)
366 cd03287 ABC_MSH3_euk MutS3 hom 95.6 0.01 2.3E-07 54.0 3.5 123 178-309 30-158 (222)
367 cd02021 GntK Gluconate kinase 95.6 0.0091 2E-07 50.9 3.0 23 181-203 1-23 (150)
368 PRK06217 hypothetical protein; 95.6 0.0091 2E-07 52.9 3.1 24 181-204 3-26 (183)
369 TIGR02655 circ_KaiC circadian 95.6 0.051 1.1E-06 56.0 8.9 88 178-269 20-130 (484)
370 PRK13407 bchI magnesium chelat 95.6 0.019 4.1E-07 55.7 5.4 48 156-203 6-53 (334)
371 cd02024 NRK1 Nicotinamide ribo 95.6 0.0096 2.1E-07 52.6 3.0 23 181-203 1-23 (187)
372 COG1224 TIP49 DNA helicase TIP 95.6 0.025 5.5E-07 53.8 5.9 55 156-210 37-96 (450)
373 PRK10463 hydrogenase nickel in 95.6 0.023 5E-07 53.5 5.6 38 169-206 94-131 (290)
374 cd03243 ABC_MutS_homologs The 95.6 0.0088 1.9E-07 53.9 2.7 23 180-202 30-52 (202)
375 TIGR00073 hypB hydrogenase acc 95.5 0.015 3.3E-07 52.6 4.2 32 173-204 16-47 (207)
376 COG0003 ArsA Predicted ATPase 95.5 0.028 6.1E-07 54.0 6.2 49 179-229 2-50 (322)
377 PRK05748 replicative DNA helic 95.5 0.82 1.8E-05 46.7 17.2 54 179-235 203-256 (448)
378 PRK06731 flhF flagellar biosyn 95.5 0.14 3.1E-06 48.1 10.6 90 178-270 74-165 (270)
379 PRK13947 shikimate kinase; Pro 95.5 0.012 2.6E-07 51.4 3.4 24 181-204 3-26 (171)
380 PRK14527 adenylate kinase; Pro 95.5 0.014 3.1E-07 52.0 3.9 28 177-204 4-31 (191)
381 PRK07276 DNA polymerase III su 95.5 0.7 1.5E-05 43.9 15.3 137 165-334 9-173 (290)
382 COG1116 TauB ABC-type nitrate/ 95.5 0.011 2.5E-07 53.6 3.1 23 179-201 29-51 (248)
383 PRK14530 adenylate kinase; Pro 95.5 0.013 2.9E-07 53.3 3.7 24 180-203 4-27 (215)
384 PTZ00185 ATPase alpha subunit; 95.5 0.12 2.6E-06 52.4 10.5 93 179-271 189-301 (574)
385 COG0055 AtpD F0F1-type ATP syn 95.5 0.032 6.9E-07 53.4 6.1 91 180-271 148-253 (468)
386 TIGR03880 KaiC_arch_3 KaiC dom 95.5 0.082 1.8E-06 48.4 8.9 40 179-220 16-55 (224)
387 TIGR03263 guanyl_kin guanylate 95.5 0.011 2.5E-07 52.0 3.0 23 180-202 2-24 (180)
388 PF00625 Guanylate_kin: Guanyl 95.5 0.017 3.8E-07 51.1 4.2 36 179-216 2-37 (183)
389 PRK05800 cobU adenosylcobinami 95.5 0.038 8.3E-07 48.1 6.2 81 181-269 3-86 (170)
390 PRK05973 replicative DNA helic 95.4 0.054 1.2E-06 49.7 7.4 48 179-230 64-111 (237)
391 PRK03846 adenylylsulfate kinas 95.4 0.025 5.3E-07 50.8 5.1 29 177-205 22-50 (198)
392 PF06068 TIP49: TIP49 C-termin 95.4 0.021 4.5E-07 55.1 4.8 53 157-209 23-80 (398)
393 KOG0652 26S proteasome regulat 95.4 0.85 1.8E-05 41.7 14.6 49 155-203 168-229 (424)
394 COG1936 Predicted nucleotide k 95.4 0.012 2.7E-07 50.2 2.9 20 181-200 2-21 (180)
395 PRK06936 type III secretion sy 95.4 0.07 1.5E-06 53.4 8.6 90 178-271 161-264 (439)
396 cd03282 ABC_MSH4_euk MutS4 hom 95.4 0.011 2.3E-07 53.3 2.7 117 178-309 28-155 (204)
397 COG0529 CysC Adenylylsulfate k 95.4 0.034 7.3E-07 47.7 5.5 33 174-206 18-50 (197)
398 PRK14529 adenylate kinase; Pro 95.4 0.065 1.4E-06 48.7 7.7 84 182-271 3-88 (223)
399 PRK13949 shikimate kinase; Pro 95.4 0.015 3.1E-07 50.8 3.4 24 181-204 3-26 (169)
400 COG1124 DppF ABC-type dipeptid 95.4 0.013 2.8E-07 52.9 3.1 25 178-202 32-56 (252)
401 PF08298 AAA_PrkA: PrkA AAA do 95.4 0.032 6.9E-07 53.7 5.9 82 158-244 61-155 (358)
402 cd01672 TMPK Thymidine monopho 95.4 0.056 1.2E-06 48.3 7.4 25 181-205 2-26 (200)
403 PF13604 AAA_30: AAA domain; P 95.4 0.056 1.2E-06 48.4 7.2 35 172-206 11-45 (196)
404 PRK00300 gmk guanylate kinase; 95.4 0.014 3.1E-07 52.6 3.4 25 179-203 5-29 (205)
405 PRK05201 hslU ATP-dependent pr 95.4 0.055 1.2E-06 53.5 7.6 48 157-204 14-75 (443)
406 smart00534 MUTSac ATPase domai 95.4 0.0076 1.7E-07 53.5 1.6 22 181-202 1-22 (185)
407 KOG2170 ATPase of the AAA+ sup 95.4 0.072 1.6E-06 49.7 7.8 99 159-271 83-190 (344)
408 PF08477 Miro: Miro-like prote 95.3 0.016 3.4E-07 47.1 3.3 23 182-204 2-24 (119)
409 cd00464 SK Shikimate kinase (S 95.3 0.016 3.4E-07 49.6 3.4 22 182-203 2-23 (154)
410 TIGR01313 therm_gnt_kin carboh 95.3 0.012 2.7E-07 50.9 2.7 22 182-203 1-22 (163)
411 cd00071 GMPK Guanosine monopho 95.3 0.013 2.8E-07 49.1 2.8 22 182-203 2-23 (137)
412 CHL00206 ycf2 Ycf2; Provisiona 95.3 0.18 4E-06 58.4 12.3 27 179-205 1630-1656(2281)
413 cd00820 PEPCK_HprK Phosphoenol 95.3 0.016 3.4E-07 45.9 2.9 22 179-200 15-36 (107)
414 PRK14737 gmk guanylate kinase; 95.3 0.016 3.4E-07 51.4 3.4 26 178-203 3-28 (186)
415 COG4240 Predicted kinase [Gene 95.3 0.12 2.6E-06 46.2 8.6 58 176-234 47-104 (300)
416 PRK06002 fliI flagellum-specif 95.3 0.049 1.1E-06 54.6 7.0 90 179-271 165-266 (450)
417 PRK09302 circadian clock prote 95.3 0.078 1.7E-06 55.1 9.0 89 178-270 30-141 (509)
418 PRK10078 ribose 1,5-bisphospho 95.3 0.015 3.3E-07 51.6 3.2 24 180-203 3-26 (186)
419 COG0465 HflB ATP-dependent Zn 95.3 0.27 5.8E-06 51.0 12.4 51 156-206 148-210 (596)
420 cd01132 F1_ATPase_alpha F1 ATP 95.3 0.079 1.7E-06 49.5 7.9 95 179-277 69-180 (274)
421 PHA02244 ATPase-like protein 95.2 0.055 1.2E-06 52.7 7.0 36 167-204 109-144 (383)
422 TIGR00176 mobB molybdopterin-g 95.2 0.02 4.3E-07 49.1 3.6 26 181-206 1-26 (155)
423 TIGR00041 DTMP_kinase thymidyl 95.2 0.066 1.4E-06 47.8 7.2 27 180-206 4-30 (195)
424 TIGR01041 ATP_syn_B_arch ATP s 95.2 0.14 3E-06 51.7 10.1 93 179-271 141-250 (458)
425 TIGR01287 nifH nitrogenase iro 95.2 0.031 6.8E-07 53.0 5.3 39 180-220 1-39 (275)
426 COG0488 Uup ATPase components 95.2 0.17 3.6E-06 52.4 10.9 121 179-309 348-500 (530)
427 PRK05057 aroK shikimate kinase 95.2 0.02 4.3E-07 50.1 3.6 24 180-203 5-28 (172)
428 PRK12339 2-phosphoglycerate ki 95.2 0.02 4.4E-07 51.1 3.7 25 179-203 3-27 (197)
429 COG1763 MobB Molybdopterin-gua 95.2 0.023 5E-07 48.6 3.8 35 179-215 2-36 (161)
430 COG3854 SpoIIIAA ncharacterize 95.1 0.056 1.2E-06 48.4 6.2 119 170-308 128-256 (308)
431 PF10923 DUF2791: P-loop Domai 95.1 0.3 6.4E-06 48.6 11.9 78 160-239 27-114 (416)
432 PLN02165 adenylate isopentenyl 95.1 0.026 5.7E-07 54.2 4.5 29 176-204 40-68 (334)
433 KOG0726 26S proteasome regulat 95.1 0.16 3.5E-06 47.1 9.3 53 152-204 179-244 (440)
434 TIGR01040 V-ATPase_V1_B V-type 95.1 0.15 3.3E-06 51.1 9.8 93 179-271 141-259 (466)
435 PRK14738 gmk guanylate kinase; 95.1 0.021 4.5E-07 51.6 3.5 25 178-202 12-36 (206)
436 PRK13975 thymidylate kinase; P 95.1 0.021 4.6E-07 51.1 3.6 25 180-204 3-27 (196)
437 COG4088 Predicted nucleotide k 95.1 0.023 4.9E-07 49.9 3.5 27 180-206 2-28 (261)
438 PRK13695 putative NTPase; Prov 95.1 0.038 8.2E-07 48.4 5.0 34 181-215 2-35 (174)
439 COG1126 GlnQ ABC-type polar am 95.0 0.021 4.5E-07 50.7 3.2 26 178-203 27-52 (240)
440 PF03029 ATP_bind_1: Conserved 95.0 0.03 6.6E-07 51.7 4.5 34 184-219 1-34 (238)
441 COG2019 AdkA Archaeal adenylat 95.0 0.025 5.5E-07 47.9 3.5 47 179-237 4-50 (189)
442 PF13521 AAA_28: AAA domain; P 95.0 0.02 4.3E-07 49.6 3.1 21 182-202 2-22 (163)
443 TIGR01420 pilT_fam pilus retra 95.0 0.055 1.2E-06 53.1 6.5 113 178-308 121-233 (343)
444 PRK13948 shikimate kinase; Pro 95.0 0.026 5.7E-07 49.7 3.8 27 178-204 9-35 (182)
445 CHL00060 atpB ATP synthase CF1 95.0 0.086 1.9E-06 53.3 7.9 92 179-271 161-274 (494)
446 PRK05636 replicative DNA helic 95.0 0.91 2E-05 46.9 15.5 53 179-234 265-317 (505)
447 COG3598 RepA RecA-family ATPas 95.0 0.11 2.3E-06 49.0 7.8 88 182-269 92-204 (402)
448 cd01134 V_A-ATPase_A V/A-type 95.0 0.31 6.8E-06 47.1 11.1 88 179-270 157-265 (369)
449 KOG0738 AAA+-type ATPase [Post 94.9 0.046 1E-06 52.7 5.4 47 159-205 213-271 (491)
450 PRK00698 tmk thymidylate kinas 94.9 0.08 1.7E-06 47.6 7.0 27 180-206 4-30 (205)
451 PRK13768 GTPase; Provisional 94.9 0.049 1.1E-06 50.9 5.6 36 180-217 3-38 (253)
452 cd03116 MobB Molybdenum is an 94.9 0.042 9.1E-07 47.2 4.8 27 180-206 2-28 (159)
453 PLN02200 adenylate kinase fami 94.9 0.026 5.7E-07 52.0 3.7 26 178-203 42-67 (234)
454 PF01078 Mg_chelatase: Magnesi 94.9 0.048 1.1E-06 48.5 5.2 43 158-202 3-45 (206)
455 COG4136 ABC-type uncharacteriz 94.9 0.035 7.5E-07 46.2 3.9 38 179-216 28-65 (213)
456 PRK13946 shikimate kinase; Pro 94.9 0.025 5.4E-07 50.1 3.4 25 180-204 11-35 (184)
457 PRK15453 phosphoribulokinase; 94.9 0.033 7.2E-07 52.1 4.2 27 178-204 4-30 (290)
458 cd02029 PRK_like Phosphoribulo 94.8 0.16 3.5E-06 47.2 8.6 26 181-206 1-26 (277)
459 cd02040 NifH NifH gene encodes 94.8 0.064 1.4E-06 50.7 6.2 42 180-223 2-43 (270)
460 PRK09825 idnK D-gluconate kina 94.8 0.028 6.1E-07 49.3 3.5 25 180-204 4-28 (176)
461 TIGR03574 selen_PSTK L-seryl-t 94.8 0.024 5.2E-07 52.9 3.3 26 181-206 1-26 (249)
462 cd01983 Fer4_NifH The Fer4_Nif 94.8 0.036 7.8E-07 42.8 3.8 25 181-205 1-25 (99)
463 PF12780 AAA_8: P-loop contain 94.8 0.097 2.1E-06 49.2 7.2 36 167-203 20-55 (268)
464 TIGR00750 lao LAO/AO transport 94.8 0.068 1.5E-06 51.4 6.3 30 177-206 32-61 (300)
465 PRK04182 cytidylate kinase; Pr 94.7 0.027 5.8E-07 49.5 3.3 23 181-203 2-24 (180)
466 PRK14493 putative bifunctional 94.7 0.034 7.5E-07 52.3 4.1 36 180-218 2-37 (274)
467 PRK05922 type III secretion sy 94.7 0.19 4.2E-06 50.3 9.5 90 178-271 156-259 (434)
468 PRK04196 V-type ATP synthase s 94.7 0.2 4.3E-06 50.8 9.7 93 179-271 143-252 (460)
469 cd02117 NifH_like This family 94.7 0.037 8E-07 50.3 4.2 27 180-206 1-27 (212)
470 PRK10875 recD exonuclease V su 94.7 0.12 2.6E-06 54.4 8.5 54 179-232 167-221 (615)
471 PRK08760 replicative DNA helic 94.7 0.23 5.1E-06 50.9 10.4 53 179-234 229-281 (476)
472 PRK14532 adenylate kinase; Pro 94.7 0.025 5.5E-07 50.2 3.0 22 182-203 3-24 (188)
473 PHA02774 E1; Provisional 94.7 0.073 1.6E-06 54.6 6.6 50 165-218 419-469 (613)
474 PRK14531 adenylate kinase; Pro 94.7 0.033 7.1E-07 49.3 3.7 24 180-203 3-26 (183)
475 PRK03731 aroL shikimate kinase 94.7 0.032 7E-07 48.7 3.6 25 180-204 3-27 (171)
476 cd01136 ATPase_flagellum-secre 94.7 0.18 3.8E-06 48.7 8.8 90 178-271 68-171 (326)
477 PF00158 Sigma54_activat: Sigm 94.7 0.048 1E-06 47.4 4.6 43 161-203 2-46 (168)
478 PTZ00088 adenylate kinase 1; P 94.7 0.03 6.5E-07 51.3 3.4 23 181-203 8-30 (229)
479 TIGR02173 cyt_kin_arch cytidyl 94.6 0.03 6.5E-07 48.8 3.3 23 181-203 2-24 (171)
480 PRK13230 nitrogenase reductase 94.6 0.056 1.2E-06 51.4 5.3 39 180-220 2-40 (279)
481 PRK05688 fliI flagellum-specif 94.6 0.1 2.3E-06 52.3 7.3 90 178-271 167-270 (451)
482 cd01428 ADK Adenylate kinase ( 94.6 0.031 6.6E-07 49.9 3.3 22 182-203 2-23 (194)
483 PF00005 ABC_tran: ABC transpo 94.6 0.028 6.1E-07 46.9 2.9 25 179-203 11-35 (137)
484 PRK13236 nitrogenase reductase 94.6 0.066 1.4E-06 51.4 5.7 31 176-206 3-33 (296)
485 PRK05537 bifunctional sulfate 94.5 0.063 1.4E-06 56.2 5.9 49 157-205 368-418 (568)
486 KOG0651 26S proteasome regulat 94.5 0.096 2.1E-06 49.1 6.3 50 157-206 131-193 (388)
487 COG1136 SalX ABC-type antimicr 94.5 0.031 6.8E-07 50.5 3.2 23 179-201 31-53 (226)
488 COG4619 ABC-type uncharacteriz 94.5 0.031 6.7E-07 47.5 2.9 25 180-204 30-54 (223)
489 TIGR03498 FliI_clade3 flagella 94.5 0.12 2.7E-06 51.5 7.7 90 178-271 139-242 (418)
490 PF10662 PduV-EutP: Ethanolami 94.5 0.033 7.2E-07 46.5 3.0 24 180-203 2-25 (143)
491 PLN02348 phosphoribulokinase 94.4 0.043 9.3E-07 53.8 4.1 29 177-205 47-75 (395)
492 PRK06761 hypothetical protein; 94.4 0.034 7.3E-07 52.4 3.3 26 180-205 4-29 (282)
493 PRK07196 fliI flagellum-specif 94.4 0.12 2.5E-06 51.8 7.2 90 178-271 154-257 (434)
494 COG2274 SunT ABC-type bacterio 94.4 0.67 1.5E-05 49.8 13.3 25 178-202 498-522 (709)
495 TIGR03496 FliI_clade1 flagella 94.4 0.2 4.4E-06 50.0 8.8 90 178-271 136-239 (411)
496 cd03114 ArgK-like The function 94.4 0.062 1.3E-06 45.7 4.5 26 181-206 1-26 (148)
497 KOG0736 Peroxisome assembly fa 94.4 0.36 7.9E-06 50.8 10.6 47 159-205 402-457 (953)
498 PHA02530 pseT polynucleotide k 94.4 0.037 8.1E-07 53.2 3.5 24 180-203 3-26 (300)
499 PRK14528 adenylate kinase; Pro 94.3 0.043 9.4E-07 48.7 3.7 24 180-203 2-25 (186)
500 PRK09099 type III secretion sy 94.3 0.15 3.4E-06 51.2 7.9 90 178-271 162-265 (441)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-67 Score=556.06 Aligned_cols=449 Identities=27% Similarity=0.440 Sum_probs=365.6
Q ss_pred hhhHHhHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCcchHhHHHHHHHHHHHHHHHhhhhhhhHHH
Q 042728 19 KSLFKPIIRQISYVFKYQSYIDGLKDQVKQLEHKRERVEIPVHQATQQGDEIYKDVADWLNSVKEFTQGAAKSITDDEDR 98 (486)
Q Consensus 19 ~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~L~~~l~~i~~~l~~a~~~~~~~~~~~~~Wl~~vr~~ayd~ed~lD~~~~~ 98 (486)
+++.+.+.++...+.+ .++.+..|++.|..++.++++++.+ +.....+..|...+++++|++||.++.|..+
T Consensus 10 ~~~~~~l~~~~~~~~~-------~~~~i~~Lk~~L~~l~~~l~d~~a~-~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~ 81 (889)
T KOG4658|consen 10 EKLDQLLNRESECLDG-------KDNYILELKENLKALQSALEDLDAK-RDDLERRVNWEEDVGDLVYLAEDIIWLFLVE 81 (889)
T ss_pred hhHHHHHHHHHHHHhc-------hHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555544 4446667777777777788888877 4567889999999999999999999988754
Q ss_pred Hhhh----------------cccCCC-CchhHHhHHhHHHHHHHHHHHhHhhcCCCCcccc-CCCccccccccccCcccc
Q 042728 99 AKKF----------------CFKGSC-PNLISRYKLSRQAAKAAEAAASLVGKGNFSNVSH-RPTPKLAEHIQVKDFEAF 160 (486)
Q Consensus 99 ~~~~----------------~~~~~~-~~~~~r~~~~~~i~~~~~~l~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 160 (486)
.... |+.+.+ .....-+.+++++-+..+.++.+..++.+..+.. ..++...+..|..+...
T Consensus 82 ~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~- 160 (889)
T KOG4658|consen 82 EIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD- 160 (889)
T ss_pred HHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-
Confidence 3211 111111 1222333445555555555555554555555543 22222233333333334
Q ss_pred ccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh-HccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042728 161 DSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVM-EENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG 239 (486)
Q Consensus 161 ~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 239 (486)
||.+..++++.+.|.+++..+++|+||||+||||||++++|+.. ++.+|+.++||+||+.++...++.+|+..++....
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 99999999999999888889999999999999999999999998 88999999999999999999999999999987443
Q ss_pred C--CCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeCchhhhhhhcCCccc
Q 042728 240 L--NENEFQRAERLHERLKKEKQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMNSQKN 317 (486)
Q Consensus 240 ~--~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~~~~ 317 (486)
. .....+.+..|.+.|. ++||||||||||+..+|+.++.|+|. ..+||+|++|||+..|+...+++...
T Consensus 241 ~~~~~~~~~~~~~i~~~L~-~krfllvLDDIW~~~dw~~I~~~~p~--------~~~g~KvvlTTRs~~V~~~~m~~~~~ 311 (889)
T KOG4658|consen 241 EWEDKEEDELASKLLNLLE-GKRFLLVLDDIWEEVDWDKIGVPFPS--------RENGSKVVLTTRSEEVCGRAMGVDYP 311 (889)
T ss_pred ccchhhHHHHHHHHHHHhc-cCceEEEEecccccccHHhcCCCCCC--------ccCCeEEEEEeccHhhhhccccCCcc
Confidence 2 2334688899999999 59999999999999999999999998 78899999999999999866888899
Q ss_pred EEcCCCChHHHHHHHHHHhCCC--CCCCchHHHHHHHHHHcCCChHHHHHHHHHhc-CCCHHHHHHHHHHHhcCchhhhc
Q 042728 318 FQIDALPPKEALQLFEEIVGDS--TKISAFQSTANEIVERCGGLPVALSTVANALK-TKELDFWKDALNQLRRSDAREIH 394 (486)
Q Consensus 318 ~~l~~L~~~e~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~-~~~~~~w~~~l~~l~~~~~~~~~ 394 (486)
++++.|+++|||+||++.++.. ...+.++++|++++++|+|+|||++++|+.|+ +.+.++|+++.+.+.+....+.+
T Consensus 312 ~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~ 391 (889)
T KOG4658|consen 312 IEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFS 391 (889)
T ss_pred ccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCC
Confidence 9999999999999999999864 34455899999999999999999999999999 56888999999998887566666
Q ss_pred cchhhhHHHHHHhHhcCCchhHhHHHHhhcCCCCCcccchhhHHHHHHhcccCCCCCChHHHHHHHHHHHHHHHHhcccc
Q 042728 395 GMQANVYTSIKLSYDFLESEEAKSLFRLCGLYSEGYVIQVSNLLRYGVGWRLFENVYTSEEARSRVHRLIDNLKSSCLLL 474 (486)
Q Consensus 395 ~~~~~v~~~l~~sy~~L~~~~~k~c~l~~s~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~ 474 (486)
++...++.+|.+||+.||++ +|.||+|||+||+||.|+++.|+.+||||||+.+....+.+++.+++++.+|+++||++
T Consensus 392 ~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~ 470 (889)
T KOG4658|consen 392 GMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLI 470 (889)
T ss_pred chhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHh
Confidence 77889999999999999977 99999999999999999999999999999999886667778899999999999999998
Q ss_pred cCC---CCCceecCC
Q 042728 475 DGD---AKDEVKMHD 486 (486)
Q Consensus 475 ~~~---~~~~~~mHD 486 (486)
... +..+|+|||
T Consensus 471 ~~~~~~~~~~~kmHD 485 (889)
T KOG4658|consen 471 EERDEGRKETVKMHD 485 (889)
T ss_pred hcccccceeEEEeeH
Confidence 664 567899998
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.5e-47 Score=367.78 Aligned_cols=277 Identities=28% Similarity=0.498 Sum_probs=226.2
Q ss_pred HHHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-
Q 042728 163 RMKVFQDVMEALRD--DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG- 239 (486)
Q Consensus 163 R~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~- 239 (486)
|+.++++|.+.|.+ ++.++|+|+|+||+||||||.+++++...+.+|+.++|++++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999987 788999999999999999999999997788889999999999999999999999999988743
Q ss_pred --CCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeCchhhhhhhcCCccc
Q 042728 240 --LNENEFQRAERLHERLKKEKQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMNSQKN 317 (486)
Q Consensus 240 --~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~~~~ 317 (486)
...+.......+.+.|.+ +++||||||||+...|+.+...++. ...||+||+|||+..++.........
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~-~~~LlVlDdv~~~~~~~~l~~~~~~--------~~~~~kilvTTR~~~v~~~~~~~~~~ 151 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKD-KRCLLVLDDVWDEEDLEELREPLPS--------FSSGSKILVTTRDRSVAGSLGGTDKV 151 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCC-TSEEEEEEEE-SHHHH-------HC--------HHSS-EEEEEESCGGGGTTHHSCEEE
T ss_pred cccccccccccccchhhhcc-ccceeeeeeeccccccccccccccc--------cccccccccccccccccccccccccc
Confidence 356788899999999985 7999999999999999888776665 66799999999999887644444788
Q ss_pred EEcCCCChHHHHHHHHHHhCCCC--CCCchHHHHHHHHHHcCCChHHHHHHHHHhc-CCCHHHHHHHHHHHhcCchhhhc
Q 042728 318 FQIDALPPKEALQLFEEIVGDST--KISAFQSTANEIVERCGGLPVALSTVANALK-TKELDFWKDALNQLRRSDAREIH 394 (486)
Q Consensus 318 ~~l~~L~~~e~~~Lf~~~~~~~~--~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~-~~~~~~w~~~l~~l~~~~~~~~~ 394 (486)
|++++|+.+++++||++.++... ..+...+.+++|+++|+|+||||.++|++|+ ..+..+|..+++++...... ..
T Consensus 152 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~ 230 (287)
T PF00931_consen 152 IELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SR 230 (287)
T ss_dssp EECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 99999999999999999998543 3455667899999999999999999999996 33678999999987766532 22
Q ss_pred cchhhhHHHHHHhHhcCCchhHhHHHHhhcCCCCCcccchhhHHHHHHhcccCCCC
Q 042728 395 GMQANVYTSIKLSYDFLESEEAKSLFRLCGLYSEGYVIQVSNLLRYGVGWRLFENV 450 (486)
Q Consensus 395 ~~~~~v~~~l~~sy~~L~~~~~k~c~l~~s~fp~~~~i~~~~Li~~Wiaeg~i~~~ 450 (486)
+....+..++.+||+.||++ +|.||+|||+||+++.|+.+.|+++|++||||++.
T Consensus 231 ~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 231 DYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp GSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 24578999999999999998 99999999999999999999999999999999753
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.5e-37 Score=340.88 Aligned_cols=293 Identities=21% Similarity=0.340 Sum_probs=226.7
Q ss_pred CccccccHHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEe---CCCC---------
Q 042728 156 DFEAFDSRMKVFQDVMEALR--DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEV---TQTP--------- 221 (486)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v---s~~~--------- 221 (486)
+.++++||+..++++..+|. .++.++|+|+||||+||||||+.+|+.... +|++.+|+.. +...
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeeccccccchhhccccccc
Confidence 45679999999999998873 457889999999999999999999998765 4888887742 1110
Q ss_pred --C-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEE
Q 042728 222 --D-HHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTI 298 (486)
Q Consensus 222 --~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~i 298 (486)
. ...+...++..+......... ....+++.|. ++|+||||||||+...|+.+...... .++||+|
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~~---~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~--------~~~GsrI 327 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKIY---HLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQW--------FGSGSRI 327 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCcccC---CHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCcc--------CCCCcEE
Confidence 0 123344444443222111110 1245667777 58999999999999888888654443 5789999
Q ss_pred EEEeCchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCC-CCCchHHHHHHHHHHcCCChHHHHHHHHHhcCCCHHH
Q 042728 299 ILTSRKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDST-KISAFQSTANEIVERCGGLPVALSTVANALKTKELDF 377 (486)
Q Consensus 299 lvTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~~ 377 (486)
|||||+..++. ..+....|+++.|+.++||+||+++||... +++.+.+++++|+++|+|+||||+++|++|+.++..+
T Consensus 328 IiTTrd~~vl~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~ 406 (1153)
T PLN03210 328 IVITKDKHFLR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKED 406 (1153)
T ss_pred EEEeCcHHHHH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHH
Confidence 99999999985 456678999999999999999999998643 4456788999999999999999999999999989999
Q ss_pred HHHHHHHHhcCchhhhccchhhhHHHHHHhHhcCCchhHhHHHHhhcCCCCCcccchhhHHHHHHhcccCCCCCChHHHH
Q 042728 378 WKDALNQLRRSDAREIHGMQANVYTSIKLSYDFLESEEAKSLFRLCGLYSEGYVIQVSNLLRYGVGWRLFENVYTSEEAR 457 (486)
Q Consensus 378 w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~l~~s~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~ 457 (486)
|+.++.+|.... +..+..+|.+||+.|+++..|.||+++|+|+.+..++ .+..|++.+.+..
T Consensus 407 W~~~l~~L~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-------- 468 (1153)
T PLN03210 407 WMDMLPRLRNGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-------- 468 (1153)
T ss_pred HHHHHHHHHhCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc--------
Confidence 999999886532 3568999999999998744899999999999886553 4677887765431
Q ss_pred HHHHHHHHHHHHhcccccCCCCCceecCC
Q 042728 458 SRVHRLIDNLKSSCLLLDGDAKDEVKMHD 486 (486)
Q Consensus 458 ~~~~~~~~~L~~~~ll~~~~~~~~~~mHD 486 (486)
...++.|+++||++..+ +.++|||
T Consensus 469 ---~~~l~~L~~ksLi~~~~--~~~~MHd 492 (1153)
T PLN03210 469 ---NIGLKNLVDKSLIHVRE--DIVEMHS 492 (1153)
T ss_pred ---hhChHHHHhcCCEEEcC--CeEEhhh
Confidence 12377888899998654 4699997
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.58 E-value=2.2e-13 Score=151.55 Aligned_cols=285 Identities=15% Similarity=0.208 Sum_probs=175.5
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeC-CCCCHHHHHHHHHHH
Q 042728 155 KDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVT-QTPDHHKIQNKLAFD 233 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs-~~~~~~~~~~~i~~~ 233 (486)
.....++-|....+.|-+. ...+++.|+|++|.||||++.++.+. ++.++|+++. .+.++..++..++..
T Consensus 11 ~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 11 VRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred CCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHH
Confidence 3355678888777766432 35689999999999999999998853 2368999996 445667777777777
Q ss_pred hCCCCCC-------------CCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCccc--cc-cccCCCCCcccccccCCCCCc
Q 042728 234 LGMEFGL-------------NENEFQRAERLHERLKK-EKQLLIILDNIWTKLE--LD-KFGIPTGDVAEKDRKDDQRRC 296 (486)
Q Consensus 234 l~~~~~~-------------~~~~~~~~~~l~~~L~~-~kr~LlVlDdv~~~~~--~~-~l~~~~~~~~~~~~~~~~~~s 296 (486)
++..... ..+.......+...+.. +.+++|||||++..+. .. .+...+. ....+.
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~--------~~~~~~ 153 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLR--------HQPENL 153 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHH--------hCCCCe
Confidence 7421110 12233344445555543 5789999999976531 11 1111111 134567
Q ss_pred EEEEEeCchhhhhh-hc-CCcccEEcC----CCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHh
Q 042728 297 TIILTSRKQDLLRI-DM-NSQKNFQID----ALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANAL 370 (486)
Q Consensus 297 ~ilvTtR~~~v~~~-~~-~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L 370 (486)
++|||||...-... .. .......+. +|+.+|+.++|....+... ..+...+|++.|+|+|+++..++..+
T Consensus 154 ~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~ 229 (903)
T PRK04841 154 TLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALSA 229 (903)
T ss_pred EEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 88899998532110 11 112244555 9999999999988665322 23467889999999999999998777
Q ss_pred cCCCHHHHHHHHHHHhcCchhhhccchhhhHHHH-HHhHhcCCchhHhHHHHhhcCCCCCcccchhhHHHHHHhcccCCC
Q 042728 371 KTKELDFWKDALNQLRRSDAREIHGMQANVYTSI-KLSYDFLESEEAKSLFRLCGLYSEGYVIQVSNLLRYGVGWRLFEN 449 (486)
Q Consensus 371 ~~~~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l-~~sy~~L~~~~~k~c~l~~s~fp~~~~i~~~~Li~~Wiaeg~i~~ 449 (486)
...... .......+... ....+...+ ...++.||++ .+.+++.+|+++ .|+.+.+-...
T Consensus 230 ~~~~~~-~~~~~~~~~~~-------~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~---~~~~~l~~~l~-------- 289 (903)
T PRK04841 230 RQNNSS-LHDSARRLAGI-------NASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR---SMNDALIVRVT-------- 289 (903)
T ss_pred hhCCCc-hhhhhHhhcCC-------CchhHHHHHHHHHHhcCCHH-HHHHHHHhcccc---cCCHHHHHHHc--------
Confidence 633210 01111111000 112344444 3348899998 999999999997 35544332221
Q ss_pred CCChHHHHHHHHHHHHHHHHhcccc-cC-CCCCceecCC
Q 042728 450 VYTSEEARSRVHRLIDNLKSSCLLL-DG-DAKDEVKMHD 486 (486)
Q Consensus 450 ~~~~~~~~~~~~~~~~~L~~~~ll~-~~-~~~~~~~mHD 486 (486)
+..+ ....+++|.+.+++. +. +...+|++|+
T Consensus 290 --~~~~----~~~~L~~l~~~~l~~~~~~~~~~~yr~H~ 322 (903)
T PRK04841 290 --GEEN----GQMRLEELERQGLFIQRMDDSGEWFRYHP 322 (903)
T ss_pred --CCCc----HHHHHHHHHHCCCeeEeecCCCCEEehhH
Confidence 1112 245688888889875 32 3345788884
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.51 E-value=2.2e-11 Score=122.31 Aligned_cols=293 Identities=16% Similarity=0.095 Sum_probs=176.6
Q ss_pred CccccccHHHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042728 156 DFEAFDSRMKVFQDVMEALRD----DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLA 231 (486)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (486)
.++.++||++++++|...+.+ .....+.|+|++|+|||++++.++++.......-.++++++....+...++..++
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 456799999999999888732 3456688999999999999999999886653234567777777778889999999
Q ss_pred HHhCCC-C-CCCCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCcc------ccccccCCCCCcccccccCCCCCcEEEEEe
Q 042728 232 FDLGME-F-GLNENEFQRAERLHERLKK-EKQLLIILDNIWTKL------ELDKFGIPTGDVAEKDRKDDQRRCTIILTS 302 (486)
Q Consensus 232 ~~l~~~-~-~~~~~~~~~~~~l~~~L~~-~kr~LlVlDdv~~~~------~~~~l~~~~~~~~~~~~~~~~~~s~ilvTt 302 (486)
.++... . ....+..+....+.+.+.. +++.+||||+++... .+..+...... ..+.+..+|.++
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-------~~~~~v~vI~i~ 180 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-------YPGARIGVIGIS 180 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-------cCCCeEEEEEEE
Confidence 998652 2 1233566677777777764 456899999998653 12222111110 011123356666
Q ss_pred Cchhhhhh----h--cCCcccEEcCCCChHHHHHHHHHHhCCCC-CCCchHHHHHHHHHHc----CCChHHHHHHHHHhc
Q 042728 303 RKQDLLRI----D--MNSQKNFQIDALPPKEALQLFEEIVGDST-KISAFQSTANEIVERC----GGLPVALSTVANALK 371 (486)
Q Consensus 303 R~~~v~~~----~--~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~~~~~~~~i~~~~----~GlPlai~~~~~~L~ 371 (486)
....+... . .-....+.+++++.++..+++..++.... ...-..+..+.|++.+ |..+.|+.++-....
T Consensus 181 ~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~ 260 (394)
T PRK00411 181 SDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGL 260 (394)
T ss_pred CCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55433211 0 11134689999999999999998764210 1111123344444444 557777777644321
Q ss_pred -----C---CCHHHHHHHHHHHhcCchhhhccchhhhHHHHHHhHhcCCchhHhHHHHhhcCC-CC-CcccchhhHHHHH
Q 042728 372 -----T---KELDFWKDALNQLRRSDAREIHGMQANVYTSIKLSYDFLESEEAKSLFRLCGLY-SE-GYVIQVSNLLRYG 441 (486)
Q Consensus 372 -----~---~~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~l~~s~f-p~-~~~i~~~~Li~~W 441 (486)
+ -+.+.+..+.+.+. .....-.+..||.+ .|..+..++-. .. ...+....+....
T Consensus 261 ~a~~~~~~~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~~-~k~~L~ai~~~~~~~~~~~~~~~i~~~y 325 (394)
T PRK00411 261 IAEREGSRKVTEEDVRKAYEKSE--------------IVHLSEVLRTLPLH-EKLLLRAIVRLLKKGGDEVTTGEVYEEY 325 (394)
T ss_pred HHHHcCCCCcCHHHHHHHHHHHH--------------HHHHHHHHhcCCHH-HHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 1 14455555555431 12344568899987 55554443322 21 1346666665432
Q ss_pred --HhcccCCCCCChHHHHHHHHHHHHHHHHhcccc
Q 042728 442 --VGWRLFENVYTSEEARSRVHRLIDNLKSSCLLL 474 (486)
Q Consensus 442 --iaeg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~ 474 (486)
+.+.+--... ....+..++++|...|++.
T Consensus 326 ~~l~~~~~~~~~----~~~~~~~~l~~L~~~glI~ 356 (394)
T PRK00411 326 KELCEELGYEPR----THTRFYEYINKLDMLGIIN 356 (394)
T ss_pred HHHHHHcCCCcC----cHHHHHHHHHHHHhcCCeE
Confidence 2221110111 2244677899999999997
No 6
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.46 E-value=3.7e-11 Score=119.33 Aligned_cols=293 Identities=15% Similarity=0.102 Sum_probs=174.4
Q ss_pred ccccccHHHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHHHHhHccC-C---CeEEEEEeCCCCCHHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALRD----DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENL-F---DKVVMAEVTQTPDHHKIQN 228 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f---~~~~wv~vs~~~~~~~~~~ 228 (486)
++.++||++++++|...|.+ ...+.+.|+|++|+|||++++.+++....... . -..+|+++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 55799999999999998853 34567899999999999999999988753211 1 2467888877778889999
Q ss_pred HHHHHh---CCCCC-CCCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCcc-c----cccccCCC-CCcccccccCCCCCcE
Q 042728 229 KLAFDL---GMEFG-LNENEFQRAERLHERLKK-EKQLLIILDNIWTKL-E----LDKFGIPT-GDVAEKDRKDDQRRCT 297 (486)
Q Consensus 229 ~i~~~l---~~~~~-~~~~~~~~~~~l~~~L~~-~kr~LlVlDdv~~~~-~----~~~l~~~~-~~~~~~~~~~~~~~s~ 297 (486)
.|+.++ +...+ ...+..+....+.+.+.. +++++||||+++... . +..+.... .. ...+....
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~------~~~~~~v~ 167 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNG------DLDNAKVG 167 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhcccccc------CCCCCeEE
Confidence 999998 33322 123445556666666653 467899999998762 1 11111000 00 00112344
Q ss_pred EEEEeCchhhhhh----hcC--CcccEEcCCCChHHHHHHHHHHhCC----CCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042728 298 IILTSRKQDLLRI----DMN--SQKNFQIDALPPKEALQLFEEIVGD----STKISAFQSTANEIVERCGGLPVALSTVA 367 (486)
Q Consensus 298 ilvTtR~~~v~~~----~~~--~~~~~~l~~L~~~e~~~Lf~~~~~~----~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 367 (486)
+|.+|........ ... ....+.+++++.++..+++..++.. ....++..+.+..++..+.|.|-.+..+.
T Consensus 168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5555544332110 111 1246899999999999999988741 11223333345556777778885443332
Q ss_pred -HHh--c---C---CCHHHHHHHHHHHhcCchhhhccchhhhHHHHHHhHhcCCchhHhHHHHhhcCC--CCCcccchhh
Q 042728 368 -NAL--K---T---KELDFWKDALNQLRRSDAREIHGMQANVYTSIKLSYDFLESEEAKSLFRLCGLY--SEGYVIQVSN 436 (486)
Q Consensus 368 -~~L--~---~---~~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~l~~s~f--p~~~~i~~~~ 436 (486)
... . + -+.+....+.+.+. .....-++..||.+ .+..+..++.. ..+..+....
T Consensus 248 ~~a~~~a~~~~~~~it~~~v~~a~~~~~--------------~~~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~~~~~~~ 312 (365)
T TIGR02928 248 RVAGEIAEREGAERVTEDHVEKAQEKIE--------------KDRLLELIRGLPTH-SKLVLLAIANLAANDEDPFRTGE 312 (365)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHH
Confidence 211 1 1 24444444444331 12334567789887 66555544321 1344577777
Q ss_pred HHHHHH--hcccCCCCCChHHHHHHHHHHHHHHHHhcccc
Q 042728 437 LLRYGV--GWRLFENVYTSEEARSRVHRLIDNLKSSCLLL 474 (486)
Q Consensus 437 Li~~Wi--aeg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~ 474 (486)
+...+- .+.+-... -....+..+++.|...|++.
T Consensus 313 ~~~~y~~~~~~~~~~~----~~~~~~~~~l~~l~~~gli~ 348 (365)
T TIGR02928 313 VYEVYKEVCEDIGVDP----LTQRRISDLLNELDMLGLVE 348 (365)
T ss_pred HHHHHHHHHHhcCCCC----CcHHHHHHHHHHHHhcCCeE
Confidence 777442 22111111 12355778899999999998
No 7
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.45 E-value=9.7e-12 Score=127.63 Aligned_cols=283 Identities=17% Similarity=0.178 Sum_probs=184.6
Q ss_pred cccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC-CCHHHHHHHHH
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT-PDHHKIQNKLA 231 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~ 231 (486)
+|..+.+.+-|....+.|.+. .+.+.+.|..|+|.|||||+.+....... -..+.|.++... .++..++..++
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~~---~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRRA---NDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred CCCCcccccccHHHHHHHhcC---CCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHH
Confidence 344466777787766665543 47789999999999999999999873322 357899998754 57888888888
Q ss_pred HHhCCCCC-------------CCCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCcc------ccccccCCCCCcccccccC
Q 042728 232 FDLGMEFG-------------LNENEFQRAERLHERLKK-EKQLLIILDNIWTKL------ELDKFGIPTGDVAEKDRKD 291 (486)
Q Consensus 232 ~~l~~~~~-------------~~~~~~~~~~~l~~~L~~-~kr~LlVlDdv~~~~------~~~~l~~~~~~~~~~~~~~ 291 (486)
..++.-.+ ...+.......+...+.. .+++.|||||..-.. .++-+...
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~----------- 156 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH----------- 156 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh-----------
Confidence 88863222 123344455555555543 568999999987442 23333233
Q ss_pred CCCCcEEEEEeCchhhhhh--hcCCcccEEcC----CCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHH
Q 042728 292 DQRRCTIILTSRKQDLLRI--DMNSQKNFQID----ALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALST 365 (486)
Q Consensus 292 ~~~~s~ilvTtR~~~v~~~--~~~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 365 (486)
...+..+++|||+.+-... ..-....++++ .|+.+|+.++|....+... .....+.+.+..+|-+-|+..
T Consensus 157 ~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L----d~~~~~~L~~~teGW~~al~L 232 (894)
T COG2909 157 APENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL----DAADLKALYDRTEGWAAALQL 232 (894)
T ss_pred CCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC----ChHHHHHHHhhcccHHHHHHH
Confidence 4458899999999864320 00112233343 5899999999998654322 234578899999999999999
Q ss_pred HHHHhcCC-CHHHHHHHHHHHhcCchhhhccchhhhH-HHHHHhHhcCCchhHhHHHHhhcCCCCCcccchhhHHHHHHh
Q 042728 366 VANALKTK-ELDFWKDALNQLRRSDAREIHGMQANVY-TSIKLSYDFLESEEAKSLFRLCGLYSEGYVIQVSNLLRYGVG 443 (486)
Q Consensus 366 ~~~~L~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~v~-~~l~~sy~~L~~~~~k~c~l~~s~fp~~~~i~~~~Li~~Wia 443 (486)
++=.+++. +.+.--..+. +..+.+. -...--++.||++ +|..++-||+++. |.-+ |+..-.+
T Consensus 233 ~aLa~~~~~~~~q~~~~Ls-----------G~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~---f~~e-L~~~Ltg 296 (894)
T COG2909 233 IALALRNNTSAEQSLRGLS-----------GAASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSR---FNDE-LCNALTG 296 (894)
T ss_pred HHHHccCCCcHHHHhhhcc-----------chHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHH---hhHH-HHHHHhc
Confidence 98888833 3222111111 1111122 2345678999998 9999999999973 3333 4443211
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHHHhcccc--cCCCCCceecC
Q 042728 444 WRLFENVYTSEEARSRVHRLIDNLKSSCLLL--DGDAKDEVKMH 485 (486)
Q Consensus 444 eg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~--~~~~~~~~~mH 485 (486)
++.+..++++|.+++|+. -.+..++|+.|
T Consensus 297 -------------~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH 327 (894)
T COG2909 297 -------------EENGQAMLEELERRGLFLQRLDDEGQWFRYH 327 (894)
T ss_pred -------------CCcHHHHHHHHHhCCCceeeecCCCceeehh
Confidence 123556789999999886 33456788888
No 8
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.44 E-value=3e-11 Score=114.69 Aligned_cols=195 Identities=16% Similarity=0.221 Sum_probs=121.2
Q ss_pred HHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHH
Q 042728 166 VFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEF 245 (486)
Q Consensus 166 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~ 245 (486)
.+..+...+ ..+.+.+.|+|++|+|||||++.+++..... .+ .++|+ +....+..+++..|+..++.+.. ..+..
T Consensus 31 ~~~~l~~~~-~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~~~~~ 105 (269)
T TIGR03015 31 AMAYLEYGL-SQREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-GRDKA 105 (269)
T ss_pred HHHHHHHHH-hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-CCCHH
Confidence 344443333 3445689999999999999999999886532 11 22233 33445778899999999887654 33333
Q ss_pred HHHHHHHHH----HhcCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEEEeCchhhhh--------hh
Q 042728 246 QRAERLHER----LKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLLR--------ID 311 (486)
Q Consensus 246 ~~~~~l~~~----L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~--------~~ 311 (486)
.....+... ...+++++||+||++... .++.+.. +.. ..........|++|....-... ..
T Consensus 106 ~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~-l~~----~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~ 180 (269)
T TIGR03015 106 ALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRM-LSN----FQTDNAKLLQIFLVGQPEFRETLQSPQLQQLR 180 (269)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHH-HhC----cccCCCCeEEEEEcCCHHHHHHHcCchhHHHH
Confidence 333444333 334678999999998763 3333311 110 0001223345566655432110 00
Q ss_pred cCCcccEEcCCCChHHHHHHHHHHhCCCC---CCCchHHHHHHHHHHcCCChHHHHHHHHHh
Q 042728 312 MNSQKNFQIDALPPKEALQLFEEIVGDST---KISAFQSTANEIVERCGGLPVALSTVANAL 370 (486)
Q Consensus 312 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~---~~~~~~~~~~~i~~~~~GlPlai~~~~~~L 370 (486)
......+.+++|+.+|..+++...+.... ...-..+..+.|++.|+|.|..|+.++..+
T Consensus 181 ~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 181 QRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred hheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 11234688999999999999987764221 122345788999999999999999998876
No 9
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.43 E-value=3.1e-13 Score=125.34 Aligned_cols=202 Identities=23% Similarity=0.359 Sum_probs=106.8
Q ss_pred cccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH---------
Q 042728 160 FDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL--------- 230 (486)
Q Consensus 160 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i--------- 230 (486)
|+||+.++++|.+.+..+..+.+.|+|+.|+|||+|++.+.+.....+ + .++|+......... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~~-~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNES-SLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHHH-HHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhhh-HHHHHHHHHHHHHH
Confidence 799999999999999887778999999999999999999998874321 1 34455443333222 12221
Q ss_pred -HHHhCCCC----------CCCCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCcc-ccc---cccCCCCCcccccccCCCC
Q 042728 231 -AFDLGMEF----------GLNENEFQRAERLHERLKK-EKQLLIILDNIWTKL-ELD---KFGIPTGDVAEKDRKDDQR 294 (486)
Q Consensus 231 -~~~l~~~~----------~~~~~~~~~~~~l~~~L~~-~kr~LlVlDdv~~~~-~~~---~l~~~~~~~~~~~~~~~~~ 294 (486)
...++... ............+.+.+.. +++++||+||+.... ... .+...+..+... .....
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~ 155 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDS--LLSQQ 155 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH------T
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhh--ccccC
Confidence 11121110 0112233444555555543 345999999997655 111 111111000000 01233
Q ss_pred CcEEEEEeCchhhhhh-------hcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 295 RCTIILTSRKQDLLRI-------DMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 295 ~s~ilvTtR~~~v~~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
+..+++++.+...... ..+....+.+++|+.+++++++...+.....-+.-.+..++|+..+||+|..|..+
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQEL 234 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhcC
Confidence 4445555555444321 12333459999999999999999976543111223566799999999999988653
No 10
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.35 E-value=1.6e-10 Score=111.80 Aligned_cols=275 Identities=13% Similarity=0.059 Sum_probs=148.1
Q ss_pred ccccccHHHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALR-----DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLA 231 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (486)
...|+|++..++.|..++. ......+.++|++|+|||+||+.+++..... + ..+..+....... +...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchh-HHHHH
Confidence 4579999999999988885 2345668899999999999999999876432 1 1222111111212 22222
Q ss_pred HHhCCCCC-----CCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeCchh
Q 042728 232 FDLGMEFG-----LNENEFQRAERLHERLKKEKQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQD 306 (486)
Q Consensus 232 ~~l~~~~~-----~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 306 (486)
..++...- ...-.......+...+.+ .+..+|+++..+...+... ..+.+-|..||+...
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~-~~~~~v~~~~~~~~~~~~~--------------~~~~~li~~t~~~~~ 141 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMED-FRLDIVIGKGPSARSVRLD--------------LPPFTLVGATTRAGM 141 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhh-hheeeeeccCccccceeec--------------CCCeEEEEecCCccc
Confidence 22221110 000001122333444442 3445555554433333211 122455666777654
Q ss_pred hhhhhcC-CcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhcCCCHHHHHHHHHHH
Q 042728 307 LLRIDMN-SQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANALKTKELDFWKDALNQL 385 (486)
Q Consensus 307 v~~~~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~~w~~~l~~l 385 (486)
+...... ....+.+++++.++..+++.+.+..... .-..+....|++.|+|.|-.+..++..+. .... ..
T Consensus 142 l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~~-------~~a~-~~ 212 (305)
T TIGR00635 142 LTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRVR-------DFAQ-VR 212 (305)
T ss_pred cCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHHH-------HHHH-Hc
Confidence 4321111 2346899999999999999988763222 22245778899999999976655554321 1100 00
Q ss_pred hcCchhhhccchhhhHHHHHHhHhcCCchhHhHHHH-hhcCCCCCcccchhhHHHHHHhcccCCCCCChHHHHHHHHHHH
Q 042728 386 RRSDAREIHGMQANVYTSIKLSYDFLESEEAKSLFR-LCGLYSEGYVIQVSNLLRYGVGWRLFENVYTSEEARSRVHRLI 464 (486)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~l-~~s~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~~~~ 464 (486)
..... . ...-......+...|..|+++ .+..|. .++.++ +..+..+.+.... +.+...+ ...+
T Consensus 213 ~~~~i-t-~~~v~~~l~~l~~~~~~l~~~-~~~~L~al~~~~~-~~~~~~~~ia~~l--------g~~~~~~----~~~~ 276 (305)
T TIGR00635 213 GQKII-N-RDIALKALEMLMIDELGLDEI-DRKLLSVLIEQFQ-GGPVGLKTLAAAL--------GEDADTI----EDVY 276 (305)
T ss_pred CCCCc-C-HHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHhC-CCcccHHHHHHHh--------CCCcchH----HHhh
Confidence 00000 0 001112222356677888887 666565 557676 3356666665542 1222233 3346
Q ss_pred H-HHHHhcccccCC
Q 042728 465 D-NLKSSCLLLDGD 477 (486)
Q Consensus 465 ~-~L~~~~ll~~~~ 477 (486)
+ .|++.+|+...+
T Consensus 277 e~~Li~~~li~~~~ 290 (305)
T TIGR00635 277 EPYLLQIGFLQRTP 290 (305)
T ss_pred hHHHHHcCCcccCC
Confidence 6 578889997544
No 11
>PF05729 NACHT: NACHT domain
Probab=99.31 E-value=2.1e-11 Score=106.57 Aligned_cols=151 Identities=22% Similarity=0.305 Sum_probs=93.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccC----CCeEEEEEeCCCCCHH---HHHHHHHHHhCCCCCCCCCHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENL----FDKVVMAEVTQTPDHH---KIQNKLAFDLGMEFGLNENEFQRAERLH 252 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 252 (486)
+++.|+|.+|+||||+++.++........ +...+|.+.+...... .+...|..+...... . ....+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~---~~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---P---IEELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---h---hHHHHH
Confidence 57899999999999999999998876543 3456777766544332 344444444332211 1 111334
Q ss_pred HHHhcCCcEEEEEeCCCCccccccc--cCCCCCcccccc-cCCCCCcEEEEEeCchhh--hhhhcCCcccEEcCCCChHH
Q 042728 253 ERLKKEKQLLIILDNIWTKLELDKF--GIPTGDVAEKDR-KDDQRRCTIILTSRKQDL--LRIDMNSQKNFQIDALPPKE 327 (486)
Q Consensus 253 ~~L~~~kr~LlVlDdv~~~~~~~~l--~~~~~~~~~~~~-~~~~~~s~ilvTtR~~~v--~~~~~~~~~~~~l~~L~~~e 327 (486)
..+...++++||+|++++...-... ......++..+. .....++++++|+|.... ..........+.+.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 4444568999999999865321100 000000010011 113568999999999876 22233444689999999999
Q ss_pred HHHHHHHHh
Q 042728 328 ALQLFEEIV 336 (486)
Q Consensus 328 ~~~Lf~~~~ 336 (486)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998865
No 12
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.29 E-value=4.1e-10 Score=109.78 Aligned_cols=278 Identities=12% Similarity=0.058 Sum_probs=148.8
Q ss_pred ccCccccccHHHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHH
Q 042728 154 VKDFEAFDSRMKVFQDVMEALR-----DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQN 228 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 228 (486)
+.....|+|++..++.+...+. ......+.|+|++|+||||||+.+++..... + .+++.+. ......+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~ 94 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLA 94 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHH
Confidence 3456789999999999887774 2345678899999999999999999887532 1 1222211 11111222
Q ss_pred HHHHHhCCCCC-----CCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeC
Q 042728 229 KLAFDLGMEFG-----LNENEFQRAERLHERLKKEKQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSR 303 (486)
Q Consensus 229 ~i~~~l~~~~~-----~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 303 (486)
.++..++...- ...-.......+...+. +.+..+++|+..+...+.. . ..+.+-|..|++
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e-~~~~~~~l~~~~~~~~~~~---~-----------l~~~~li~at~~ 159 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAME-DFRLDIMIGKGPAARSIRL---D-----------LPPFTLIGATTR 159 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHHH-hcceeeeeccCccccceee---c-----------CCCceEEeecCC
Confidence 22222211100 00000011112222222 1233344444322211110 0 122455666777
Q ss_pred chhhhhhhcC-CcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhcCCCHHHHHHHH
Q 042728 304 KQDLLRIDMN-SQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANALKTKELDFWKDAL 382 (486)
Q Consensus 304 ~~~v~~~~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~~w~~~l 382 (486)
...+...... ....+.+++++.++..+++.+.+..... .-..+....|++.|+|.|-.+..+...+. .|....
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~ 233 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV-EIDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK 233 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc
Confidence 5544321111 2356899999999999999988764322 22345788999999999975555554322 121111
Q ss_pred HHHhcCchhhhccchhhhHHHHHHhHhcCCchhHhHHHH-hhcCCCCCcccchhhHHHHHHhcccCCCCCChHHHHHHHH
Q 042728 383 NQLRRSDAREIHGMQANVYTSIKLSYDFLESEEAKSLFR-LCGLYSEGYVIQVSNLLRYGVGWRLFENVYTSEEARSRVH 461 (486)
Q Consensus 383 ~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~l-~~s~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~ 461 (486)
. ..... ...-......+...+..|++. .+..+. .+..|+.+ .+..+.+.... +.+...+++
T Consensus 234 ~---~~~I~--~~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~-~~~~~~~a~~l--------g~~~~~~~~--- 295 (328)
T PRK00080 234 G---DGVIT--KEIADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGG-PVGLDTLAAAL--------GEERDTIED--- 295 (328)
T ss_pred C---CCCCC--HHHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCC-ceeHHHHHHHH--------CCCcchHHH---
Confidence 0 00000 011122334556677888877 666665 77778755 57887775543 122233333
Q ss_pred HHHH-HHHHhcccccCC
Q 042728 462 RLID-NLKSSCLLLDGD 477 (486)
Q Consensus 462 ~~~~-~L~~~~ll~~~~ 477 (486)
.++ .|++.+|++..+
T Consensus 296 -~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 296 -VYEPYLIQQGFIQRTP 311 (328)
T ss_pred -HhhHHHHHcCCcccCC
Confidence 344 677779997544
No 13
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.12 E-value=1.2e-09 Score=103.66 Aligned_cols=178 Identities=16% Similarity=0.243 Sum_probs=113.8
Q ss_pred cccccccCccccccHHHHHH---HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHH
Q 042728 149 AEHIQVKDFEAFDSRMKVFQ---DVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHK 225 (486)
Q Consensus 149 ~~~~~~~~~~~~~gR~~~~~---~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~ 225 (486)
..+..+.+.+.++|.+..+. -|..++..+.+....+||++|+||||||+.+....... | ..+|...+-.+
T Consensus 15 A~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvk 87 (436)
T COG2256 15 AERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVK 87 (436)
T ss_pred HHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc--e-----EEeccccccHH
Confidence 34555666778888877663 46677778888888999999999999999999865432 3 33343333222
Q ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEE--E
Q 042728 226 IQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIIL--T 301 (486)
Q Consensus 226 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilv--T 301 (486)
-++.+++ .-++....+++.+|++|.|+... +-+.+ .|. --+|.-|+| |
T Consensus 88 dlr~i~e-----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~l-Lp~----------vE~G~iilIGAT 139 (436)
T COG2256 88 DLREIIE-----------------EARKNRLLGRRTILFLDEIHRFNKAQQDAL-LPH----------VENGTIILIGAT 139 (436)
T ss_pred HHHHHHH-----------------HHHHHHhcCCceEEEEehhhhcChhhhhhh-hhh----------hcCCeEEEEecc
Confidence 2222222 22233333689999999998663 33334 333 334666665 6
Q ss_pred eCchhhh--hhhcCCcccEEcCCCChHHHHHHHHHHhCCCC-----CCC-chHHHHHHHHHHcCCChH
Q 042728 302 SRKQDLL--RIDMNSQKNFQIDALPPKEALQLFEEIVGDST-----KIS-AFQSTANEIVERCGGLPV 361 (486)
Q Consensus 302 tR~~~v~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-----~~~-~~~~~~~~i~~~~~GlPl 361 (486)
|-++... ....+...++.+++|+.++..+++.+.+.... ... -.++....++..++|---
T Consensus 140 TENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 140 TENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred CCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 6666531 11345678999999999999999998443211 111 224467778888888544
No 14
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.09 E-value=1.3e-09 Score=109.51 Aligned_cols=185 Identities=11% Similarity=0.169 Sum_probs=113.3
Q ss_pred cccccCccccccHHHHHHH---HHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHH
Q 042728 151 HIQVKDFEAFDSRMKVFQD---VMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQ 227 (486)
Q Consensus 151 ~~~~~~~~~~~gR~~~~~~---l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 227 (486)
...+...+.++|++..+.. |..++.....+.+.|+|++|+||||||+.+++..... |+.++.......-+
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~-------~~~l~a~~~~~~~i 77 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP-------FEALSAVTSGVKDL 77 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------EEEEecccccHHHH
Confidence 3445567789999988766 8888887777889999999999999999998875321 22222221111111
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEE--EeC
Q 042728 228 NKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIIL--TSR 303 (486)
Q Consensus 228 ~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilv--TtR 303 (486)
+.+++ ........+++.+|++|+++... ..+.+...+. .+..+++ ||.
T Consensus 78 r~ii~-----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le-----------~~~iilI~att~ 129 (413)
T PRK13342 78 REVIE-----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE-----------DGTITLIGATTE 129 (413)
T ss_pred HHHHH-----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh-----------cCcEEEEEeCCC
Confidence 22221 11112222467899999998653 2333322221 2444444 344
Q ss_pred chh--hhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCC-CC-CchHHHHHHHHHHcCCChHHHHHHHHHh
Q 042728 304 KQD--LLRIDMNSQKNFQIDALPPKEALQLFEEIVGDST-KI-SAFQSTANEIVERCGGLPVALSTVANAL 370 (486)
Q Consensus 304 ~~~--v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~-~~~~~~~~~i~~~~~GlPlai~~~~~~L 370 (486)
+.. +.....+....+.+.+++.++...++.+.+.... .. .-..+..+.|++.|+|.|..+..+...+
T Consensus 130 n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 130 NPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred ChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 332 1111234457899999999999999998664211 11 2335677889999999998765554433
No 15
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.09 E-value=5.5e-08 Score=101.40 Aligned_cols=289 Identities=18% Similarity=0.161 Sum_probs=162.1
Q ss_pred ccccccHHHHHHHHHHHhcc----CC-ccEEEEEcCCCCcHHHHHHHHHHHHhHc---cCCC--eEEEEEeCCCCCHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALRD----DK-LNIIGVHGMGGVGKTTIVKQVAKQVMEE---NLFD--KVVMAEVTQTPDHHKI 226 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~----~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~--~~~wv~vs~~~~~~~~ 226 (486)
++.+.||++++++|...|.. .. ..++.|+|++|+|||++++.|.+.+... .... .+++|++....+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 56688999999999888743 22 3567899999999999999999876432 1122 3677877777788899
Q ss_pred HHHHHHHhCCCCC-CCCCHHHHHHHHHHHHhc--CCcEEEEEeCCCCccc-----cccccCCCCCcccccccCCCCCcEE
Q 042728 227 QNKLAFDLGMEFG-LNENEFQRAERLHERLKK--EKQLLIILDNIWTKLE-----LDKFGIPTGDVAEKDRKDDQRRCTI 298 (486)
Q Consensus 227 ~~~i~~~l~~~~~-~~~~~~~~~~~l~~~L~~--~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~~~~~~~~~~s~i 298 (486)
+..|..++....+ ...+.......+...+.. +...+||||+++.... +-.+... + ...+++|
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~---------~~s~SKL 903 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-P---------TKINSKL 903 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-h---------hccCCeE
Confidence 9999998843322 233344555666665532 2346899999986521 1111000 0 2234444
Q ss_pred EE--EeCchhhhh----hhcC--CcccEEcCCCChHHHHHHHHHHhCCC---CCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042728 299 IL--TSRKQDLLR----IDMN--SQKNFQIDALPPKEALQLFEEIVGDS---TKISAFQSTANEIVERCGGLPVALSTVA 367 (486)
Q Consensus 299 lv--TtR~~~v~~----~~~~--~~~~~~l~~L~~~e~~~Lf~~~~~~~---~~~~~~~~~~~~i~~~~~GlPlai~~~~ 367 (486)
++ +|....... .... ....+..+|++.++-.+++..++... ..+..++-+++.++...|-.-.||.++-
T Consensus 904 iLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILR 983 (1164)
T PTZ00112 904 VLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICR 983 (1164)
T ss_pred EEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHH
Confidence 43 343222111 0111 12347789999999999999988632 1222222333333334445556666665
Q ss_pred HHhcCC-----CHHHHHHHHHHHhcCchhhhccchhhhHHHHHHhHhcCCchhHhHHHHhhcCC-C--CCcccchhhHHH
Q 042728 368 NALKTK-----ELDFWKDALNQLRRSDAREIHGMQANVYTSIKLSYDFLESEEAKSLFRLCGLY-S--EGYVIQVSNLLR 439 (486)
Q Consensus 368 ~~L~~~-----~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~l~~s~f-p--~~~~i~~~~Li~ 439 (486)
...... +.+....+..++.. ..+.-....||.+ .|-.|..+... - ....++...+..
T Consensus 984 rAgEikegskVT~eHVrkAleeiE~--------------srI~e~IktLPlH-qKLVLlALIlLlk~tg~~~i~TGEVYe 1048 (1164)
T PTZ00112 984 KAFENKRGQKIVPRDITEATNQLFD--------------SPLTNAINYLPWP-FKMFLTCLIVELRMLNDFIIPYKKVLN 1048 (1164)
T ss_pred HHHhhcCCCccCHHHHHHHHHHHHh--------------hhHHHHHHcCCHH-HHHHHHHHHHHHhhcCCCceeHHHHHH
Confidence 544311 22233333332211 1234456789987 55444423221 1 122466666655
Q ss_pred HHH--hc--c-cCCCCCChHHHHHHHHHHHHHHHHhcccc
Q 042728 440 YGV--GW--R-LFENVYTSEEARSRVHRLIDNLKSSCLLL 474 (486)
Q Consensus 440 ~Wi--ae--g-~i~~~~~~~~~~~~~~~~~~~L~~~~ll~ 474 (486)
..- ++ | .+. ..+. .. .+.+++.+|...|+|.
T Consensus 1049 rYk~Lce~~Gk~iG-v~pl--Tq-RV~d~L~eL~~LGIIl 1084 (1164)
T PTZ00112 1049 RYKVLVETSGKYIG-MCSN--NE-LFKIMLDKLVKMGILL 1084 (1164)
T ss_pred HHHHHHHhhhhhcC-CCCc--HH-HHHHHHHHHHhcCeEE
Confidence 432 22 1 111 1111 12 6778899999999886
No 16
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.08 E-value=9.8e-09 Score=106.19 Aligned_cols=190 Identities=17% Similarity=0.194 Sum_probs=118.0
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHccC-------------------CCe
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEENL-------------------FDK 211 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~ 211 (486)
+.+...+.++|.+..++.|.+++..+++ +.+.++|..|+||||+|+.+.+.+.-... |..
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~D 89 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVD 89 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCce
Confidence 4455677899999999999999987764 45689999999999999999887642211 111
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCcccccc
Q 042728 212 VVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDR 289 (486)
Q Consensus 212 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~ 289 (486)
+++++.+....+.+ .+++++.+ ...-..++.-++|||+++... .++.+...+..
T Consensus 90 viEIDAas~rgVDd-IReLIe~a-----------------~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE------ 145 (830)
T PRK07003 90 YVEMDAASNRGVDE-MAALLERA-----------------VYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE------ 145 (830)
T ss_pred EEEecccccccHHH-HHHHHHHH-----------------HhccccCCceEEEEeChhhCCHHHHHHHHHHHHh------
Confidence 22332222211111 11111111 100111345688999998764 35554333322
Q ss_pred cCCCCCcEEEEEeCchh-hhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCh-HHHHHHH
Q 042728 290 KDDQRRCTIILTSRKQD-LLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLP-VALSTVA 367 (486)
Q Consensus 290 ~~~~~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP-lai~~~~ 367 (486)
...++++|+||.+.. +.....+.+..+++.+++.++..+.+.+.+..... .-..+....|++.++|.. -++.++-
T Consensus 146 --PP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI-~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 146 --PPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI-AFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred --cCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 445677777776654 32223455678999999999999999988764322 123456788999998865 4655544
Q ss_pred H
Q 042728 368 N 368 (486)
Q Consensus 368 ~ 368 (486)
.
T Consensus 223 Q 223 (830)
T PRK07003 223 Q 223 (830)
T ss_pred H
Confidence 3
No 17
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.07 E-value=7.1e-09 Score=112.22 Aligned_cols=265 Identities=14% Similarity=0.162 Sum_probs=159.6
Q ss_pred ccccHHHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHHhHc-cCCCeEEEEEeCCCC---CHHHHHHHHH
Q 042728 159 AFDSRMKVFQDVMEALRD---DKLNIIGVHGMGGVGKTTIVKQVAKQVMEE-NLFDKVVMAEVTQTP---DHHKIQNKLA 231 (486)
Q Consensus 159 ~~~gR~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~vs~~~---~~~~~~~~i~ 231 (486)
+++||+.+++.|...+.+ +...++.+.|.+|||||+|+++|......+ +.|-.-.+-....+. .....+++++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 478999999999998843 456799999999999999999999887654 111111111122222 1222333333
Q ss_pred HHh-------------------CCCC------------------CC----CCCHH-----HHHHHHHHHHhcCCcEEEEE
Q 042728 232 FDL-------------------GMEF------------------GL----NENEF-----QRAERLHERLKKEKQLLIIL 265 (486)
Q Consensus 232 ~~l-------------------~~~~------------------~~----~~~~~-----~~~~~l~~~L~~~kr~LlVl 265 (486)
.++ +... +. +.... .....+..+....++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 333 1110 00 00001 12233444444567999999
Q ss_pred eCCCCcc--cc---ccccCCCC--CcccccccCCCCCcEEEEEeCch-hhhhhhcCCcccEEcCCCChHHHHHHHHHHhC
Q 042728 266 DNIWTKL--EL---DKFGIPTG--DVAEKDRKDDQRRCTIILTSRKQ-DLLRIDMNSQKNFQIDALPPKEALQLFEEIVG 337 (486)
Q Consensus 266 Ddv~~~~--~~---~~l~~~~~--~~~~~~~~~~~~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 337 (486)
||+.-.+ .+ +.+....+ .+ ..+..-.+.|.+.. ............|.|.||+..+...+....++
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~-------~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~ 233 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAY-------RDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLG 233 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhh-------hccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhC
Confidence 9995332 11 11111110 00 00111122333332 11111234557899999999999999999887
Q ss_pred CCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhcCC-------CHHHHHHHHHHHhcCchhhhccchhhhHHHHHHhHhc
Q 042728 338 DSTKISAFQSTANEIVERCGGLPVALSTVANALKTK-------ELDFWKDALNQLRRSDAREIHGMQANVYTSIKLSYDF 410 (486)
Q Consensus 338 ~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~ 410 (486)
... ....+....|+++..|+|+.+..+-..+... +...|..-..++... ...+++...+..-.+.
T Consensus 234 ~~~--~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~------~~~~~vv~~l~~rl~k 305 (849)
T COG3899 234 CTK--LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL------ATTDAVVEFLAARLQK 305 (849)
T ss_pred Ccc--cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc------hhhHHHHHHHHHHHhc
Confidence 532 2234578899999999999999999998742 344454433332221 1223366679999999
Q ss_pred CCchhHhHHHHhhcCCCCCcccchhhHHHHH
Q 042728 411 LESEEAKSLFRLCGLYSEGYVIQVSNLLRYG 441 (486)
Q Consensus 411 L~~~~~k~c~l~~s~fp~~~~i~~~~Li~~W 441 (486)
||.. .+..+...|++. ..|+...|...|
T Consensus 306 L~~~-t~~Vl~~AA~iG--~~F~l~~La~l~ 333 (849)
T COG3899 306 LPGT-TREVLKAAACIG--NRFDLDTLAALA 333 (849)
T ss_pred CCHH-HHHHHHHHHHhC--ccCCHHHHHHHH
Confidence 9998 999999999996 457777777765
No 18
>PRK04195 replication factor C large subunit; Provisional
Probab=98.97 E-value=1e-07 Score=97.72 Aligned_cols=249 Identities=14% Similarity=0.074 Sum_probs=140.4
Q ss_pred cccCccccccHHHHHHHHHHHhccC----CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHH
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALRDD----KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQN 228 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~~----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 228 (486)
.|.....++|++..++.|.+|+... ..+.+.|+|++|+||||+|+.+++... |+ ++-++.+...+.. .+.
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~ 82 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIE 82 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHH
Confidence 3445667999999999999988532 267899999999999999999998863 33 3334444433332 233
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc------cccccCCCCCcccccccCCCCCcEEEEEe
Q 042728 229 KLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE------LDKFGIPTGDVAEKDRKDDQRRCTIILTS 302 (486)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~~~~~~~s~ilvTt 302 (486)
.++........ +.+.++-+||+|+++.... +..+...+ ...++.||+|+
T Consensus 83 ~~i~~~~~~~s---------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l----------~~~~~~iIli~ 137 (482)
T PRK04195 83 RVAGEAATSGS---------------LFGARRKLILLDEVDGIHGNEDRGGARAILELI----------KKAKQPIILTA 137 (482)
T ss_pred HHHHHhhccCc---------------ccCCCCeEEEEecCcccccccchhHHHHHHHHH----------HcCCCCEEEec
Confidence 33322211100 1112568999999986532 22221111 12234466666
Q ss_pred Cchh-hhh-hhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhc-CC---CHH
Q 042728 303 RKQD-LLR-IDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANALK-TK---ELD 376 (486)
Q Consensus 303 R~~~-v~~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~-~~---~~~ 376 (486)
.+.. ... ........+.+.+++.++....+.+.+....... ..+....|++.++|..-.+......+. +. +..
T Consensus 138 n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i-~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~ 216 (482)
T PRK04195 138 NDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC-DDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLE 216 (482)
T ss_pred cCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHH
Confidence 4432 111 1223456799999999999999888775322222 246788999999997765554444343 22 222
Q ss_pred HHHHHHHHHhcCchhhhccchhhhHHHHHHhHh-cCCchhHhHHHHhhcCCCCCcccchhhHHHHHHhcccCCCCCC
Q 042728 377 FWKDALNQLRRSDAREIHGMQANVYTSIKLSYD-FLESEEAKSLFRLCGLYSEGYVIQVSNLLRYGVGWRLFENVYT 452 (486)
Q Consensus 377 ~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~-~L~~~~~k~c~l~~s~fp~~~~i~~~~Li~~Wiaeg~i~~~~~ 452 (486)
....+.. .....+++.++...+. .-+.. +...+.. ..++.+ .+-.|+.|++......
T Consensus 217 ~v~~~~~----------~d~~~~if~~l~~i~~~k~~~~-a~~~~~~-------~~~~~~-~i~~~l~en~~~~~~~ 274 (482)
T PRK04195 217 DVKTLGR----------RDREESIFDALDAVFKARNADQ-ALEASYD-------VDEDPD-DLIEWIDENIPKEYDD 274 (482)
T ss_pred HHHHhhc----------CCCCCCHHHHHHHHHCCCCHHH-HHHHHHc-------ccCCHH-HHHHHHHhccccccCC
Confidence 2221111 1123455666665554 22222 3332221 223443 5677999998765333
No 19
>PRK06893 DNA replication initiation factor; Validated
Probab=98.94 E-value=2e-08 Score=92.50 Aligned_cols=154 Identities=15% Similarity=0.174 Sum_probs=93.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKK 257 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (486)
..+.+.|+|++|+|||+|++.+++....+ ...+.|++++... .. ...+.+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~---------------------~~~~~~~~~- 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YF---------------------SPAVLENLE- 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hh---------------------hHHHHhhcc-
Confidence 44678999999999999999999997655 3456677653110 00 011222222
Q ss_pred CCcEEEEEeCCCCc---ccccc-ccCCCCCcccccccCCCCCcEEEE-EeCch---------hhhhhhcCCcccEEcCCC
Q 042728 258 EKQLLIILDNIWTK---LELDK-FGIPTGDVAEKDRKDDQRRCTIIL-TSRKQ---------DLLRIDMNSQKNFQIDAL 323 (486)
Q Consensus 258 ~kr~LlVlDdv~~~---~~~~~-l~~~~~~~~~~~~~~~~~~s~ilv-TtR~~---------~v~~~~~~~~~~~~l~~L 323 (486)
+.-+|++||+|.. ..|+. +...+.. ....|..+|+ |+... .+.. .+.....++++++
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~-------~~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~p 161 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNR-------IKEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDL 161 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHH-------HHHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCC
Confidence 3359999999864 23432 1111111 0223555554 44442 2222 2344568899999
Q ss_pred ChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHH
Q 042728 324 PPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVAN 368 (486)
Q Consensus 324 ~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~ 368 (486)
+.++.++++++.+.... -.--+++..-|++.+.|..-.+..+-.
T Consensus 162 d~e~~~~iL~~~a~~~~-l~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 162 TDEQKIIVLQRNAYQRG-IELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred CHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 99999999998886332 222356778889988886655544433
No 20
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.92 E-value=3.4e-08 Score=96.98 Aligned_cols=206 Identities=17% Similarity=0.154 Sum_probs=115.0
Q ss_pred ccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCH--HHHHH--H
Q 042728 154 VKDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDH--HKIQN--K 229 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~--~~~~~--~ 229 (486)
|.....++|++..++.|..++..+..+.+.++|++|+||||+|+.+++.......-...+.++++..... ..+.. .
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcc
Confidence 3445678999999999999998877677899999999999999999987753211122344544321100 00000 0
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHhc-----CCcEEEEEeCCCCccc--cccccCCCCCcccccccCCCCCcEEEEEe
Q 042728 230 LAFDLGMEFGLNENEFQRAERLHERLKK-----EKQLLIILDNIWTKLE--LDKFGIPTGDVAEKDRKDDQRRCTIILTS 302 (486)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~l~~~L~~-----~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~~~s~ilvTt 302 (486)
....++.......+..+....+.+.... ..+-+||+||++.... ...+...+.. ....+++|+||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~--------~~~~~~~Il~~ 162 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQ--------YSRTCRFIIAT 162 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHh--------ccCCCeEEEEe
Confidence 0000000000001111222222222211 2345899999976521 2222111111 23356777777
Q ss_pred Cchh-hhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHH
Q 042728 303 RKQD-LLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVAN 368 (486)
Q Consensus 303 R~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~ 368 (486)
.... +..........+.+.+++.++...++...+...... -..+..+.+++.++|.+-.+.....
T Consensus 163 ~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~~l~ 228 (337)
T PRK12402 163 RQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAILTLQ 228 (337)
T ss_pred CChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5433 221122344678999999999999998876532222 2246788899999998766544333
No 21
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.91 E-value=2.2e-08 Score=88.96 Aligned_cols=192 Identities=17% Similarity=0.159 Sum_probs=100.7
Q ss_pred ccccccCccccccHHHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHH
Q 042728 150 EHIQVKDFEAFDSRMKVFQDVMEALR-----DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHH 224 (486)
Q Consensus 150 ~~~~~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (486)
....|...+.|+|.+..+..+.-.+. .+....+.++|++|+||||||..+++..... |. +.+.+.-....
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~~---~~sg~~i~k~~ 90 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--FK---ITSGPAIEKAG 90 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EE---EEECCC--SCH
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--eE---eccchhhhhHH
Confidence 34556678899999998887654442 2456778999999999999999999987654 32 22221110111
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc--cccccCCCCCcccccccCCC---------
Q 042728 225 KIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE--LDKFGIPTGDVAEKDRKDDQ--------- 293 (486)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~--------- 293 (486)
+ ++..+ ..+. ++-+|++|+++.... -+.+.....+....+....+
T Consensus 91 d---------------------l~~il-~~l~--~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~ 146 (233)
T PF05496_consen 91 D---------------------LAAIL-TNLK--EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRIN 146 (233)
T ss_dssp H---------------------HHHHH-HT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE
T ss_pred H---------------------HHHHH-HhcC--CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeecc
Confidence 1 11111 1222 346888899986521 11111111110000000011
Q ss_pred --CCcEEEEEeCchhhhhhhcCCcc-cEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHh
Q 042728 294 --RRCTIILTSRKQDLLRIDMNSQK-NFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANAL 370 (486)
Q Consensus 294 --~~s~ilvTtR~~~v~~~~~~~~~-~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L 370 (486)
+-+-|=.|||...+..-...... ..+++..+.+|-.+++.+.+.-.. .+-.++.+.+|++.|.|.|--..-+-+..
T Consensus 147 l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~-i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 147 LPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN-IEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp ----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred CCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 22335568888765431222233 358999999999999998765322 22235678999999999998777666655
Q ss_pred c
Q 042728 371 K 371 (486)
Q Consensus 371 ~ 371 (486)
+
T Consensus 226 r 226 (233)
T PF05496_consen 226 R 226 (233)
T ss_dssp C
T ss_pred H
Confidence 5
No 22
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=7.3e-08 Score=95.10 Aligned_cols=198 Identities=12% Similarity=0.150 Sum_probs=112.9
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
+.|.....++|.+..++.|.+.+..++. +.+.++|+.|+||||+|+.+++.......+.. .+...-.....+
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~~~ 82 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICKEI 82 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHHHH
Confidence 3445567899999999999999877654 45789999999999999999987642111100 000000000111
Q ss_pred HHHhC-----CCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEE
Q 042728 231 AFDLG-----MEFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTII 299 (486)
Q Consensus 231 ~~~l~-----~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~il 299 (486)
..... .........+ ....+.+.+. .+++-++|+|+++... .++.+...+.. ....+++|
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~-~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe--------~~~~~~fI 153 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVE-EMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE--------PPQHIKFI 153 (363)
T ss_pred hcCCCCceEEecccccCCHH-HHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc--------CCCCeEEE
Confidence 00000 0000001111 1222222221 1345699999998764 34444333332 34466667
Q ss_pred EEeCch-hhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 300 LTSRKQ-DLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 300 vTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
++|.+. .+.....+....+++.+++.++..+.+...+..... .-.++.+..|++.++|.|-.+...
T Consensus 154 l~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~-~i~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 154 LATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI-DTDEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred EEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 666543 333222344578999999999999998886653221 122356788999999988644433
No 23
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=2.9e-08 Score=101.44 Aligned_cols=203 Identities=16% Similarity=0.212 Sum_probs=115.6
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKLN-IIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
+.+.....++|.+..++.|.+++..++.. .+.++|+.|+||||+|+.+.+...-.+. +..--+. +.....-.....|
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~~-~~PCG~C~sC~~I 87 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGIT-AQPCGQCRACTEI 87 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccCC-CCCCcccHHHHHH
Confidence 34556778999999999999999877654 5689999999999999999987643110 0000000 0000000011111
Q ss_pred HHH-----hCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEE
Q 042728 231 AFD-----LGMEFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTII 299 (486)
Q Consensus 231 ~~~-----l~~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~il 299 (486)
... +.++.......++... +.+.+. .++.-++|+|+++... ..+.+...+.. ...++++|
T Consensus 88 ~aG~hpDviEIdAas~~gVDdIRe-Lie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE--------PP~~v~FI 158 (700)
T PRK12323 88 DAGRFVDYIEMDAASNRGVDEMAQ-LLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE--------PPEHVKFI 158 (700)
T ss_pred HcCCCCcceEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc--------CCCCceEE
Confidence 000 0000000111222222 222211 2456799999998763 34444333332 33455555
Q ss_pred E-EeCchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 300 L-TSRKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 300 v-TtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
+ ||....+.....+.+..+.+..++.++..+.+.+.+...... ...+..+.|++.++|.|.-...+
T Consensus 159 LaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~-~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 159 LATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA-HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred EEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 5 554454543344556789999999999999998876532222 12345678999999999755444
No 24
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=3e-08 Score=104.64 Aligned_cols=189 Identities=14% Similarity=0.192 Sum_probs=115.4
Q ss_pred cccccCccccccHHHHHHHHHHHhccCCccE-EEEEcCCCCcHHHHHHHHHHHHhHccCC-------------------C
Q 042728 151 HIQVKDFEAFDSRMKVFQDVMEALRDDKLNI-IGVHGMGGVGKTTIVKQVAKQVMEENLF-------------------D 210 (486)
Q Consensus 151 ~~~~~~~~~~~gR~~~~~~l~~~L~~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~f-------------------~ 210 (486)
.+++.....++|.+..++.|.+++..+++.- +.++|+.|+||||+|+.+++........ .
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~ 88 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFV 88 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCc
Confidence 3445567789999999999999998877655 5899999999999999999886432111 0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc--cccccccCCCCCccccc
Q 042728 211 KVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTK--LELDKFGIPTGDVAEKD 288 (486)
Q Consensus 211 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~ 288 (486)
-++++..+....+.. ++.|... +...-..+++-++|||+++.. ...+.+...+..
T Consensus 89 DviEidAas~~kVDd-IReLie~-----------------v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE----- 145 (944)
T PRK14949 89 DLIEVDAASRTKVDD-TRELLDN-----------------VQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE----- 145 (944)
T ss_pred eEEEeccccccCHHH-HHHHHHH-----------------HHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-----
Confidence 112221111111111 1222211 111111246679999999866 334444333322
Q ss_pred ccCCCCCcEEEEEeCc-hhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 289 RKDDQRRCTIILTSRK-QDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 289 ~~~~~~~s~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
...++++|++|.+ ..+.......+..|++.+|+.++...++.+.+.... .....+....|++.++|.|--+..+
T Consensus 146 ---PP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 146 ---PPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred ---cCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3345666555544 444322344567899999999999999988765322 1223456788999999988654444
No 25
>PTZ00202 tuzin; Provisional
Probab=98.88 E-value=5.1e-07 Score=87.67 Aligned_cols=163 Identities=15% Similarity=0.184 Sum_probs=104.5
Q ss_pred cCccccccHHHHHHHHHHHhccC---CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042728 155 KDFEAFDSRMKVFQDVMEALRDD---KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLA 231 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (486)
.+...|+||+.++.+|...|.+. .++++.|+|++|+|||||++.+..... + ..++++.. +..+++..++
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~LL 330 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRSVV 330 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHHHH
Confidence 34668999999999999988542 345899999999999999999986543 1 13333333 6799999999
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHh----c-CCcEEEEEeCCC--Ccc-ccccccCCCCCcccccccCCCCCcEEEEEeC
Q 042728 232 FDLGMEFGLNENEFQRAERLHERLK----K-EKQLLIILDNIW--TKL-ELDKFGIPTGDVAEKDRKDDQRRCTIILTSR 303 (486)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~L~----~-~kr~LlVlDdv~--~~~-~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 303 (486)
.+||.+.. ....++...|.+.+. . +++.+||+-=-+ +.. .+++. ..+.. ...-|.|++---
T Consensus 331 ~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~--------drr~ch~v~evp 399 (550)
T PTZ00202 331 KALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALAC--------DRRLCHVVIEVP 399 (550)
T ss_pred HHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHc--------cchhheeeeeeh
Confidence 99998433 333445555555443 2 555666653221 111 12221 12222 555677877655
Q ss_pred chhhh--hhhcCCcccEEcCCCChHHHHHHHHHHh
Q 042728 304 KQDLL--RIDMNSQKNFQIDALPPKEALQLFEEIV 336 (486)
Q Consensus 304 ~~~v~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 336 (486)
.+... ....+.-..|.+++++.+++..+..+..
T Consensus 400 leslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 400 LESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred HhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 55432 1122344578999999999999877654
No 26
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=3.9e-07 Score=89.14 Aligned_cols=285 Identities=16% Similarity=0.178 Sum_probs=172.2
Q ss_pred ccccccHHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALR----DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAF 232 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (486)
++.+.+|+++++++...|. ...+..+.|+|.+|+|||+.++.+.+.......=..+++|++....+...++..|++
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 4458899999999988773 344455999999999999999999999876532223899999999999999999999
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCcccc-----ccccCCCCCcccccccCCCCCcEE--EEEeCc
Q 042728 233 DLGMEFGLNENEFQRAERLHERLKK-EKQLLIILDNIWTKLEL-----DKFGIPTGDVAEKDRKDDQRRCTI--ILTSRK 304 (486)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~L~~-~kr~LlVlDdv~~~~~~-----~~l~~~~~~~~~~~~~~~~~~s~i--lvTtR~ 304 (486)
+++..+....+..+....+.+.+.. ++.+++|||+++....- -.+.... ....++| |..+-+
T Consensus 96 ~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~----------~~~~~~v~vi~i~n~ 165 (366)
T COG1474 96 KLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAP----------GENKVKVSIIAVSND 165 (366)
T ss_pred HcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhc----------cccceeEEEEEEecc
Confidence 9975544466777788888888875 67899999999865322 1221111 2224444 334443
Q ss_pred hhhhhh-------hcCCcccEEcCCCChHHHHHHHHHHhCC----CCCCCchHHHHHHHHHHcC-CChHHHHHHHHHhc-
Q 042728 305 QDLLRI-------DMNSQKNFQIDALPPKEALQLFEEIVGD----STKISAFQSTANEIVERCG-GLPVALSTVANALK- 371 (486)
Q Consensus 305 ~~v~~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~----~~~~~~~~~~~~~i~~~~~-GlPlai~~~~~~L~- 371 (486)
...... ..+. ..+..+|-+.+|-.+++..++.. ....+...+.+..++..-+ ---.||..+-....
T Consensus 166 ~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~ei 244 (366)
T COG1474 166 DKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEI 244 (366)
T ss_pred HHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence 332211 1122 34889999999999999988752 2333343444444444444 44455555533332
Q ss_pred -C--C----CHHHHHHHHHHHhcCchhhhccchhhhHHHHHHhHhcCCchhHhHHHHhhcCCCCCcccchhhHHHHHHhc
Q 042728 372 -T--K----ELDFWKDALNQLRRSDAREIHGMQANVYTSIKLSYDFLESEEAKSLFRLCGLYSEGYVIQVSNLLRYGVGW 444 (486)
Q Consensus 372 -~--~----~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~l~~s~fp~~~~i~~~~Li~~Wiae 444 (486)
. . +...-..+.... -.....-....||.+ .|-.+.....-- ..+....+-.....
T Consensus 245 Ae~~~~~~v~~~~v~~a~~~~--------------~~~~~~~~~~~L~~~-~ki~L~~i~~~~--~~~~~~~~y~~y~~- 306 (366)
T COG1474 245 AEREGSRKVSEDHVREAQEEI--------------ERDVLEEVLKTLPLH-QKIVLLAIVELT--VEISTGELYDVYES- 306 (366)
T ss_pred HHhhCCCCcCHHHHHHHHHHh--------------hHHHHHHHHHcCCHh-HHHHHHHHHHhc--CCCChHHHHHHHHH-
Confidence 1 0 122222221111 012334457788887 555444322221 33444444433211
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHhcccc
Q 042728 445 RLFENVYTSEEARSRVHRLIDNLKSSCLLL 474 (486)
Q Consensus 445 g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~ 474 (486)
+...... ....+.+++++|...|++.
T Consensus 307 -~~~~~~~---~~~~~~~ii~~L~~lgiv~ 332 (366)
T COG1474 307 -LCERLRT---SQRRFSDIISELEGLGIVS 332 (366)
T ss_pred -HHhhhCc---hHHHHHHHHHHHHhcCeEE
Confidence 0111111 3446778899998888886
No 27
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.88 E-value=3.5e-08 Score=91.03 Aligned_cols=177 Identities=12% Similarity=0.138 Sum_probs=106.5
Q ss_pred ccccc--cHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042728 157 FEAFD--SRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDL 234 (486)
Q Consensus 157 ~~~~~--gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 234 (486)
.++|+ +.+..++.+..++.......+.|+|++|+|||+||+.+++..... ....++++++.-... .
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~~------~---- 81 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQA------D---- 81 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHHh------H----
Confidence 44555 355677788887656666789999999999999999999887543 345566655432110 0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc---ccc-cccCCCCCcccccccCCCCCcEEEEEeCchhhhh-
Q 042728 235 GMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL---ELD-KFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLLR- 309 (486)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~---~~~-~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~- 309 (486)
..+...+. +.-+||+||++... .|. .+...+.. ....+..+|+||+......
T Consensus 82 --------------~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~-------~~~~~~~iIits~~~~~~~~ 138 (226)
T TIGR03420 82 --------------PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNR-------VREAGGRLLIAGRAAPAQLP 138 (226)
T ss_pred --------------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHH-------HHHcCCeEEEECCCChHHCC
Confidence 01112222 22489999998653 222 22111110 0122347888887543210
Q ss_pred -------hhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHH
Q 042728 310 -------IDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANA 369 (486)
Q Consensus 310 -------~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~ 369 (486)
........+++++++.++...++...+.... .+--.+..+.|.+.+.|+|..+..+...
T Consensus 139 ~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 139 LRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG-LQLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred cccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 0122245799999999999999987553211 1222456677888888888766665433
No 28
>PLN03025 replication factor C subunit; Provisional
Probab=98.85 E-value=6.3e-08 Score=94.01 Aligned_cols=187 Identities=11% Similarity=0.091 Sum_probs=111.7
Q ss_pred cccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCC-eEEEEEeCCCCCHHHHHHHHH
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFD-KVVMAEVTQTPDHHKIQNKLA 231 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~ 231 (486)
.|.....++|.++.+..|..++..++.+.+.++|++|+||||+|..+++..... .|. .++-++.+...... ..+.++
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~-~vr~~i 85 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGID-VVRNKI 85 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHH-HHHHHH
Confidence 445567789999999999988887777778899999999999999999887432 122 22222333322222 222222
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc--cccccCCCCCcccccccCCCCCcEEEEEeCch-hhh
Q 042728 232 FDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE--LDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQ-DLL 308 (486)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~v~ 308 (486)
+.+..... .+..++.-++++|+++.... .+.+...+.. ....+++++++... .+.
T Consensus 86 ~~~~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~--------~~~~t~~il~~n~~~~i~ 143 (319)
T PLN03025 86 KMFAQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEI--------YSNTTRFALACNTSSKII 143 (319)
T ss_pred HHHHhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhc--------ccCCceEEEEeCCccccc
Confidence 21110000 00113457999999987632 1222111111 23456677766443 222
Q ss_pred hhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHH
Q 042728 309 RIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALS 364 (486)
Q Consensus 309 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 364 (486)
....+....+++.+++.++....+...+......- ..+....|++.++|..-.+.
T Consensus 144 ~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i-~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 144 EPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPY-VPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred hhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 11223346799999999999999988775332221 24567889999999765443
No 29
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.85 E-value=1.2e-07 Score=92.44 Aligned_cols=189 Identities=10% Similarity=0.082 Sum_probs=111.2
Q ss_pred ccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCC-eEEEEEeCCCCCHHHHHHHHHH
Q 042728 154 VKDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFD-KVVMAEVTQTPDHHKIQNKLAF 232 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~ 232 (486)
|.....++|+++.++.|..++..+..+.+.|+|++|+||||+++.+++...... +. ..+-++.+....... ....+.
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~~-~~~~i~ 90 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRENFLELNASDERGIDV-IRNKIK 90 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchHH-HHHHHH
Confidence 344567899999999999999877777789999999999999999998874432 21 112222222222211 111111
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc--cccccCCCCCcccccccCCCCCcEEEEEeCchh-hhh
Q 042728 233 DLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE--LDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQD-LLR 309 (486)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-v~~ 309 (486)
.+....+ .....+-++++|+++.... ...+...+.. ....+.+|+++.... ...
T Consensus 91 ~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~--------~~~~~~lIl~~~~~~~l~~ 147 (319)
T PRK00440 91 EFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEM--------YSQNTRFILSCNYSSKIID 147 (319)
T ss_pred HHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhc--------CCCCCeEEEEeCCccccch
Confidence 1110000 0012356899999875521 2222211111 233466777664332 211
Q ss_pred hhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHH
Q 042728 310 IDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVAN 368 (486)
Q Consensus 310 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~ 368 (486)
........+++.+++.++...++...+...... -.++....+++.++|.+.-+.....
T Consensus 148 ~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~-i~~~al~~l~~~~~gd~r~~~~~l~ 205 (319)
T PRK00440 148 PIQSRCAVFRFSPLKKEAVAERLRYIAENEGIE-ITDDALEAIYYVSEGDMRKAINALQ 205 (319)
T ss_pred hHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 122334578999999999999998877532221 2245778899999998876444433
No 30
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.85 E-value=1.1e-07 Score=96.48 Aligned_cols=200 Identities=15% Similarity=0.156 Sum_probs=113.9
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCe-EEEEEeCCCCCHHHHHHH
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDK-VVMAEVTQTPDHHKIQNK 229 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~vs~~~~~~~~~~~ 229 (486)
+.+.....++|.+..+..|...+..++. +.+.++|+.|+||||+|+.+++.......... --+..+... .....
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~ 90 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCIS 90 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHH
Confidence 3445567889999999999988876654 57889999999999999999987643211100 000000000 00000
Q ss_pred HHHHhC-----CCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCc--cccccccCCCCCcccccccCCCCCcEE
Q 042728 230 LAFDLG-----MEFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTK--LELDKFGIPTGDVAEKDRKDDQRRCTI 298 (486)
Q Consensus 230 i~~~l~-----~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~i 298 (486)
+..... .+.......++... +.+... .+++-++|+|+++.. ..++.+...+.. ....+.+
T Consensus 91 i~~~~h~Dv~eidaas~~~vd~Ir~-iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe--------pp~~~vf 161 (507)
T PRK06645 91 FNNHNHPDIIEIDAASKTSVDDIRR-IIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE--------PPPHIIF 161 (507)
T ss_pred HhcCCCCcEEEeeccCCCCHHHHHH-HHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh--------cCCCEEE
Confidence 100000 00000111222221 212211 135678999999875 335554333332 3345555
Q ss_pred EE-EeCchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHH
Q 042728 299 IL-TSRKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALST 365 (486)
Q Consensus 299 lv-TtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 365 (486)
|+ ||+...+..........+++.+++.++....+...+....... ..+....|++.++|.+--+..
T Consensus 162 I~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i-e~eAL~~Ia~~s~GslR~al~ 228 (507)
T PRK06645 162 IFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT-DIEALRIIAYKSEGSARDAVS 228 (507)
T ss_pred EEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 54 5555555432334557899999999999999998886433222 235667899999998754433
No 31
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=1.5e-07 Score=96.09 Aligned_cols=200 Identities=14% Similarity=0.136 Sum_probs=115.2
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKLN-IIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
+.+...+.++|.+...+.|..++..+... .+.++|++|+||||+|+.+++.....+.+...+|.|.+... +.......
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~d 86 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPD 86 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCc
Confidence 34455678999999999999998777654 56999999999999999999887543222223333321100 00000000
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEEEeC-
Q 042728 231 AFDLGMEFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIILTSR- 303 (486)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR- 303 (486)
+..++. ......+ ....+.+.+. .+++-++|+|+++... .++.+...+.. ....+.+|++|.
T Consensus 87 v~el~~--~~~~~vd-~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe--------p~~~t~~Il~t~~ 155 (504)
T PRK14963 87 VLEIDA--ASNNSVE-DVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE--------PPEHVIFILATTE 155 (504)
T ss_pred eEEecc--cccCCHH-HHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh--------CCCCEEEEEEcCC
Confidence 000000 0011111 1222333222 1356799999998652 34444333322 333455555554
Q ss_pred chhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHH
Q 042728 304 KQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALS 364 (486)
Q Consensus 304 ~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 364 (486)
...+..........+++.+++.++..+.+.+.+....... ..+....|++.++|.+--+.
T Consensus 156 ~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 156 PEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDAE 215 (504)
T ss_pred hhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 3334322344567899999999999999998775332221 24567889999999886543
No 32
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.81 E-value=1.8e-08 Score=84.33 Aligned_cols=116 Identities=17% Similarity=0.269 Sum_probs=83.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHcc---CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEEN---LFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERL 255 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L 255 (486)
.+.+.|+|++|+|||++++.+.+...... .-..++|++++...+...+...|+.+++.......+.......+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 46789999999999999999998875321 134567999988889999999999999988775567788888899999
Q ss_pred hcCCcEEEEEeCCCCc-c--ccccccCCCCCcccccccCCCCCcEEEEEeCc
Q 042728 256 KKEKQLLIILDNIWTK-L--ELDKFGIPTGDVAEKDRKDDQRRCTIILTSRK 304 (486)
Q Consensus 256 ~~~kr~LlVlDdv~~~-~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~ 304 (486)
...+..+||+|+++.. . .++.+.... +..+.+||+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~----------~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLL----------NESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHT----------CSCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHH----------hCCCCeEEEEECh
Confidence 8766679999999765 2 122221111 3556777777665
No 33
>PF13173 AAA_14: AAA domain
Probab=98.81 E-value=8.5e-09 Score=85.87 Aligned_cols=121 Identities=24% Similarity=0.227 Sum_probs=80.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKE 258 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 258 (486)
.+++.|.|+.|+|||||+++++++.. ....+++++............ + ....+.+... +
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~-~~~~~~~~~~-~ 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------D-LLEYFLELIK-P 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------h-hHHHHHHhhc-c
Confidence 46899999999999999999998875 245677777655433111000 0 1222233322 2
Q ss_pred CcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeCchhhhhh-----hcCCcccEEcCCCChHHH
Q 042728 259 KQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLLRI-----DMNSQKNFQIDALPPKEA 328 (486)
Q Consensus 259 kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~-----~~~~~~~~~l~~L~~~e~ 328 (486)
++.+++||++....+|......+.+ .....+|++|+.+...... ..+....++|.||+..|.
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d--------~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVD--------NGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHH--------hccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 5688999999998888776555544 4457899999988766431 123345689999998774
No 34
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.80 E-value=4.2e-08 Score=91.68 Aligned_cols=180 Identities=13% Similarity=0.230 Sum_probs=114.2
Q ss_pred cccccCccccccHHHHHH---HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHH
Q 042728 151 HIQVKDFEAFDSRMKVFQ---DVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQ 227 (486)
Q Consensus 151 ~~~~~~~~~~~gR~~~~~---~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 227 (486)
+..+.....+||.+..+. .|.+.+.++..+.+.+||++|+||||||+.+.+..+... ..||..|....-..-.
T Consensus 131 rmRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dv 206 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDV 206 (554)
T ss_pred hcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHH
Confidence 334444556777666543 355566778889999999999999999999998765432 6678777665444444
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEE--EeC
Q 042728 228 NKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIIL--TSR 303 (486)
Q Consensus 228 ~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilv--TtR 303 (486)
+.|.++.. . ...+. ++|.+|++|.|.... +-+.+ .|. -.+|.-++| ||.
T Consensus 207 R~ife~aq--------------~-~~~l~-krkTilFiDEiHRFNksQQD~f-LP~----------VE~G~I~lIGATTE 259 (554)
T KOG2028|consen 207 RDIFEQAQ--------------N-EKSLT-KRKTILFIDEIHRFNKSQQDTF-LPH----------VENGDITLIGATTE 259 (554)
T ss_pred HHHHHHHH--------------H-HHhhh-cceeEEEeHHhhhhhhhhhhcc-cce----------eccCceEEEecccC
Confidence 45544321 0 11122 578999999998653 33333 332 334665555 777
Q ss_pred chhhh--hhhcCCcccEEcCCCChHHHHHHHHHHhC---C------CCCCC---chHHHHHHHHHHcCCChH
Q 042728 304 KQDLL--RIDMNSQKNFQIDALPPKEALQLFEEIVG---D------STKIS---AFQSTANEIVERCGGLPV 361 (486)
Q Consensus 304 ~~~v~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~---~------~~~~~---~~~~~~~~i~~~~~GlPl 361 (486)
++..- ......+.++.|++|+.++...++.+... + ..+++ -...+.+-++..|.|-.-
T Consensus 260 NPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 260 NPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred CCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 66531 11345678899999999999999887332 1 11221 123466778888888543
No 35
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.79 E-value=3.7e-08 Score=87.75 Aligned_cols=74 Identities=16% Similarity=0.280 Sum_probs=43.3
Q ss_pred ccccHHHHHHHHHHHh---ccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-----CHHHHHHHH
Q 042728 159 AFDSRMKVFQDVMEAL---RDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-----DHHKIQNKL 230 (486)
Q Consensus 159 ~~~gR~~~~~~l~~~L---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-----~~~~~~~~i 230 (486)
.|+||++++++|...+ .....+.+.|+|++|+|||+|++.++........+ ++.+.+.... +...+++++
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 78 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY--VISINCDDSERNPYSPFRSALRQL 78 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT----EEEEEEETTTS-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE--EEEEEEeccccchhhHHHHHHHHH
Confidence 4899999999999999 33456889999999999999999999988776333 3333333331 124555555
Q ss_pred HHHh
Q 042728 231 AFDL 234 (486)
Q Consensus 231 ~~~l 234 (486)
+.++
T Consensus 79 ~~~~ 82 (185)
T PF13191_consen 79 IDQL 82 (185)
T ss_dssp S---
T ss_pred HHHh
Confidence 5443
No 36
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=1.8e-07 Score=96.04 Aligned_cols=184 Identities=16% Similarity=0.197 Sum_probs=114.1
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHccC-------------------CCe
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEENL-------------------FDK 211 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~ 211 (486)
+++.....++|.+...+.|.+++..++. +.+.++|+.|+||||+|+.+++...-... |.-
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpD 88 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFID 88 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCc
Confidence 4455677899999999999999987764 56789999999999999999887632111 111
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH----hcCCcEEEEEeCCCCcc--ccccccCCCCCcc
Q 042728 212 VVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERL----KKEKQLLIILDNIWTKL--ELDKFGIPTGDVA 285 (486)
Q Consensus 212 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L----~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~ 285 (486)
++.++.+... ..++. ..+.... ..+++-++|+|+++... ..+.+...+..
T Consensus 89 viEIDAAs~~---------------------~VddI-Reli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE-- 144 (702)
T PRK14960 89 LIEIDAASRT---------------------KVEDT-RELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE-- 144 (702)
T ss_pred eEEecccccC---------------------CHHHH-HHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc--
Confidence 1222221111 11111 1122211 11456689999998663 33333322222
Q ss_pred cccccCCCCCcEEEEEeCchh-hhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHH
Q 042728 286 EKDRKDDQRRCTIILTSRKQD-LLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALS 364 (486)
Q Consensus 286 ~~~~~~~~~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 364 (486)
...++++|++|.+.. +.....+....+++.+++.++..+.+.+.+...... --.+....|++.++|.+..+.
T Consensus 145 ------PP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~-id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 145 ------PPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA-ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred ------CCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 334567777665533 322223556789999999999999998877533222 224567789999999775444
Q ss_pred HH
Q 042728 365 TV 366 (486)
Q Consensus 365 ~~ 366 (486)
.+
T Consensus 218 nL 219 (702)
T PRK14960 218 SL 219 (702)
T ss_pred HH
Confidence 33
No 37
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=2.7e-07 Score=94.39 Aligned_cols=190 Identities=13% Similarity=0.173 Sum_probs=113.8
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHcc-------------------CCCe
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEEN-------------------LFDK 211 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~ 211 (486)
+.+.....++|.+..++.|...+..+.. +.+.++|+.|+||||+|+.+++...... .|..
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~d 89 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFID 89 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCc
Confidence 3455677899999999999999977655 4578999999999999999998664210 1222
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCcccccc
Q 042728 212 VVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDR 289 (486)
Q Consensus 212 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~ 289 (486)
++++.........+ .+.+++ .+...-..+++-++|+|+++... ..+.+...+..
T Consensus 90 lieidaas~~gvd~-ir~ii~-----------------~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe------ 145 (546)
T PRK14957 90 LIEIDAASRTGVEE-TKEILD-----------------NIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE------ 145 (546)
T ss_pred eEEeecccccCHHH-HHHHHH-----------------HHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc------
Confidence 22332222222211 111111 11111112456799999998653 33434333322
Q ss_pred cCCCCCcEEEE-EeCchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChH-HHHHHH
Q 042728 290 KDDQRRCTIIL-TSRKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPV-ALSTVA 367 (486)
Q Consensus 290 ~~~~~~s~ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~~ 367 (486)
....+.+|+ ||....+.....+....+++.+++.++....+.+.+..... .........|++.++|.+- |+..+-
T Consensus 146 --pp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi-~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 146 --PPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI-NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred --CCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 334555554 55444343223445678999999999999888876643222 2234566789999999664 555543
Q ss_pred H
Q 042728 368 N 368 (486)
Q Consensus 368 ~ 368 (486)
.
T Consensus 223 k 223 (546)
T PRK14957 223 Q 223 (546)
T ss_pred H
Confidence 3
No 38
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.76 E-value=2.7e-08 Score=95.18 Aligned_cols=234 Identities=24% Similarity=0.308 Sum_probs=156.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKK 257 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (486)
..+.+.++|.|||||||++-++.. .+.. .-+.+.++...+-.+...+.-.+...++....... .....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~-~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~---~~~~~~~~~~~- 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASE-YADGVAFVDLAPITDPALVFPTLAGALGLHVQPGD---SAVDTLVRRIG- 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhhh-cccceeeeeccccCchhHhHHHHHhhcccccccch---HHHHHHHHHHh-
Confidence 347799999999999999999998 4443 23567777877777888777777777777654211 22334444554
Q ss_pred CCcEEEEEeCCCCccc-cccccCCCCCcccccccCCCCCcEEEEEeCchhhhhhhcCCcccEEcCCCChH-HHHHHHHHH
Q 042728 258 EKQLLIILDNIWTKLE-LDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMNSQKNFQIDALPPK-EALQLFEEI 335 (486)
Q Consensus 258 ~kr~LlVlDdv~~~~~-~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~~~~~~l~~L~~~-e~~~Lf~~~ 335 (486)
++|.++|+||.....+ -..+...+-. +...-.++.|+|.... ........+++|+.. ++.++|...
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~--------~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~r 154 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLG--------ACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCR 154 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHc--------cchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHH
Confidence 5899999999876521 1111111111 3334568888887743 234456777887765 788888776
Q ss_pred hCC----CCCCCchHHHHHHHHHHcCCChHHHHHHHHHhcCCCHHHHHHHHHH----HhcCchhhhccchhhhHHHHHHh
Q 042728 336 VGD----STKISAFQSTANEIVERCGGLPVALSTVANALKTKELDFWKDALNQ----LRRSDAREIHGMQANVYTSIKLS 407 (486)
Q Consensus 336 ~~~----~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~~w~~~l~~----l~~~~~~~~~~~~~~v~~~l~~s 407 (486)
+.. -.-.........+|.++..|.|++|...++..+.....+....++. +... ......-.......+.+|
T Consensus 155 a~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws 233 (414)
T COG3903 155 AVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWS 233 (414)
T ss_pred HHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhh
Confidence 642 1112233457788999999999999999999997766665444442 2222 112222335678899999
Q ss_pred HhcCCchhHhHHHHhhcCCCCCcc
Q 042728 408 YDFLESEEAKSLFRLCGLYSEGYV 431 (486)
Q Consensus 408 y~~L~~~~~k~c~l~~s~fp~~~~ 431 (486)
|.-|..- .+-.|.-++.|...+.
T Consensus 234 ~~lLtgw-e~~~~~rLa~~~g~f~ 256 (414)
T COG3903 234 YALLTGW-ERALFGRLAVFVGGFD 256 (414)
T ss_pred hHhhhhH-HHHHhcchhhhhhhhc
Confidence 9999987 8999999999986543
No 39
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=2e-07 Score=92.96 Aligned_cols=199 Identities=15% Similarity=0.141 Sum_probs=116.9
Q ss_pred cccccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHH
Q 042728 151 HIQVKDFEAFDSRMKVFQDVMEALRDDKLN-IIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNK 229 (486)
Q Consensus 151 ~~~~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 229 (486)
.+.+.....++|.+..+..|..++..+... .+.++|+.|+||||+|+.+++.......... ..+....+- ..
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC----~~ 83 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSC----LE 83 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHH----HH
Confidence 344556778999999999999999887754 5799999999999999999987643211110 000011111 11
Q ss_pred HHHHhCC-----CCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCc--cccccccCCCCCcccccccCCCCCcEE
Q 042728 230 LAFDLGM-----EFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTK--LELDKFGIPTGDVAEKDRKDDQRRCTI 298 (486)
Q Consensus 230 i~~~l~~-----~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~i 298 (486)
+...... ........++ ...+.+.+. .++.-++|+|+++.. ..++.+...+.. ....+.+
T Consensus 84 i~~g~~~dviEIdaas~~gVd~-IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE--------Pp~~viF 154 (484)
T PRK14956 84 ITKGISSDVLEIDAASNRGIEN-IRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE--------PPAHIVF 154 (484)
T ss_pred HHccCCccceeechhhcccHHH-HHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc--------CCCceEE
Confidence 1111100 0000111111 222222222 245669999999866 335555333322 3335554
Q ss_pred E-EEeCchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 299 I-LTSRKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 299 l-vTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
| .||....+.....+....|.+.+++.++..+.+.+.+..... .-..+....|++.++|.+.-+..+
T Consensus 155 ILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi-~~e~eAL~~Ia~~S~Gd~RdAL~l 222 (484)
T PRK14956 155 ILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV-QYDQEGLFWIAKKGDGSVRDMLSF 222 (484)
T ss_pred EeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCChHHHHHHH
Confidence 4 455545454334455678999999999999998887653222 222457788999999988544333
No 40
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=4.1e-07 Score=91.70 Aligned_cols=188 Identities=12% Similarity=0.132 Sum_probs=116.0
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhHc-------------------cCCCe
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKLN-IIGVHGMGGVGKTTIVKQVAKQVMEE-------------------NLFDK 211 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~ 211 (486)
+.+.....++|.+..++.|.+.+..+..+ .+.++|+.|+||||+|+.+++...-. ..+.-
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 34456778999999999999988777664 78999999999999999998754211 11112
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCcccccc
Q 042728 212 VVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDR 289 (486)
Q Consensus 212 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~ 289 (486)
++.++.+....+.+ .+++.+.....+ . .+++-++|+|+++... ..+.+...+..
T Consensus 87 v~eidaas~~~vdd-IR~Iie~~~~~P----------------~-~~~~KVvIIDEah~Ls~~A~NaLLK~LEe------ 142 (491)
T PRK14964 87 VIEIDAASNTSVDD-IKVILENSCYLP----------------I-SSKFKVYIIDEVHMLSNSAFNALLKTLEE------ 142 (491)
T ss_pred EEEEecccCCCHHH-HHHHHHHHHhcc----------------c-cCCceEEEEeChHhCCHHHHHHHHHHHhC------
Confidence 33444433333332 222222211100 0 1355689999998653 23333332322
Q ss_pred cCCCCCcEEEEEe-CchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 290 KDDQRRCTIILTS-RKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 290 ~~~~~~s~ilvTt-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
....+.+|++| ....+..........+++.+++.++....+.+.+...... -..+....|++.++|.+..+...
T Consensus 143 --Pp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~-i~~eAL~lIa~~s~GslR~alsl 217 (491)
T PRK14964 143 --PAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE-HDEESLKLIAENSSGSMRNALFL 217 (491)
T ss_pred --CCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 33456666555 4444443334556789999999999999999877643222 22456778999999987644333
No 41
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=4.5e-07 Score=87.85 Aligned_cols=176 Identities=11% Similarity=0.190 Sum_probs=114.4
Q ss_pred cccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHh----HccCCCeEEEEEe-CCCCCHHHHHHHHH
Q 042728 158 EAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVM----EENLFDKVVMAEV-TQTPDHHKIQNKLA 231 (486)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~----~~~~f~~~~wv~v-s~~~~~~~~~~~i~ 231 (486)
..++|.+...+.|..++..+.. +...++|+.|+||||+|..+++... ...|+|...|... +......+ .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 4678999999999999977654 5668999999999999999998753 2346676556542 22233333 22333
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc--cccccccCCCCCcccccccCCCCCcEEEEEeCchhhh-
Q 042728 232 FDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTK--LELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLL- 308 (486)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~- 308 (486)
+.+...+ .. +++-++|+|+++.. ..++.+...+.. ...++.+|++|.+....
T Consensus 83 ~~~~~~p----------------~~-~~~kv~iI~~ad~m~~~a~naLLK~LEe--------pp~~t~~il~~~~~~~ll 137 (313)
T PRK05564 83 EEVNKKP----------------YE-GDKKVIIIYNSEKMTEQAQNAFLKTIEE--------PPKGVFIILLCENLEQIL 137 (313)
T ss_pred HHHhcCc----------------cc-CCceEEEEechhhcCHHHHHHHHHHhcC--------CCCCeEEEEEeCChHhCc
Confidence 3332211 11 24456777776543 456666555554 56688888888655422
Q ss_pred hhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHH
Q 042728 309 RIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALS 364 (486)
Q Consensus 309 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 364 (486)
....+.+..+++.++++++....+.+.... ...+.++.++..++|.|.-+.
T Consensus 138 ~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 138 DTIKSRCQIYKLNRLSKEEIEKFISYKYND-----IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HHHHhhceeeeCCCcCHHHHHHHHHHHhcC-----CCHHHHHHHHHHcCCCHHHHH
Confidence 212345578999999999998888765431 112346788999999987554
No 42
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=3.1e-07 Score=92.95 Aligned_cols=192 Identities=16% Similarity=0.233 Sum_probs=113.0
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHccC-------------------CCe
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEENL-------------------FDK 211 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~ 211 (486)
.+|...+.++|.+.....|...+..+.. +.+.++|++|+||||+|+.+++....... +..
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d 87 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD 87 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence 3455677899999999999888877766 45789999999999999999887643210 011
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCcccccc
Q 042728 212 VVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDR 289 (486)
Q Consensus 212 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~ 289 (486)
+..++.+.......+ +.+....... .. .+++-++|+|+++... ..+.+...+..
T Consensus 88 v~el~aa~~~gid~i-R~i~~~~~~~----------------p~-~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~------ 143 (472)
T PRK14962 88 VIELDAASNRGIDEI-RKIRDAVGYR----------------PM-EGKYKVYIIDEVHMLTKEAFNALLKTLEE------ 143 (472)
T ss_pred cEEEeCcccCCHHHH-HHHHHHHhhC----------------hh-cCCeEEEEEEChHHhHHHHHHHHHHHHHh------
Confidence 222222222222211 1222111100 01 1356799999997652 23333222221
Q ss_pred cCCCCCcEEEEEeCc-hhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCC-ChHHHHHHH
Q 042728 290 KDDQRRCTIILTSRK-QDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGG-LPVALSTVA 367 (486)
Q Consensus 290 ~~~~~~s~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~G-lPlai~~~~ 367 (486)
....+.+|++|.+ ..+..........+++.+++.++....+.+.+..... .-..+....|++.++| ++.++..+-
T Consensus 144 --p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le 220 (472)
T PRK14962 144 --PPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLE 220 (472)
T ss_pred --CCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 2234444444433 3343323445678999999999999998887753221 1224567788887765 567777776
Q ss_pred HHh
Q 042728 368 NAL 370 (486)
Q Consensus 368 ~~L 370 (486)
.+.
T Consensus 221 ~l~ 223 (472)
T PRK14962 221 QVW 223 (472)
T ss_pred HHH
Confidence 544
No 43
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.74 E-value=1.5e-07 Score=99.67 Aligned_cols=177 Identities=16% Similarity=0.264 Sum_probs=104.0
Q ss_pred cccccCccccccHHHHHH---HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHH
Q 042728 151 HIQVKDFEAFDSRMKVFQ---DVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQ 227 (486)
Q Consensus 151 ~~~~~~~~~~~gR~~~~~---~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 227 (486)
...+...+.|+|++..+. .|...+..+..+.+.++|++|+||||||+.+++.... +|. .++.+. ....+
T Consensus 21 k~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~--~f~---~lna~~-~~i~d-- 92 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA--HFS---SLNAVL-AGVKD-- 92 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC--cce---eehhhh-hhhHH--
Confidence 334455678999988874 5777777777778899999999999999999987542 231 111110 00100
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEEE--e
Q 042728 228 NKLAFDLGMEFGLNENEFQRAERLHERLK-KEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIILT--S 302 (486)
Q Consensus 228 ~~i~~~l~~~~~~~~~~~~~~~~l~~~L~-~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvT--t 302 (486)
..+......+.+. .+++.+|||||++... ..+.+.... ..++.++++ |
T Consensus 93 ----------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l-----------E~g~IiLI~aTT 145 (725)
T PRK13341 93 ----------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV-----------ENGTITLIGATT 145 (725)
T ss_pred ----------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh-----------cCceEEEEEecC
Confidence 1111122222221 1356799999998653 333332211 224545543 3
Q ss_pred Cchh--hhhhhcCCcccEEcCCCChHHHHHHHHHHhCC------CCCCCchHHHHHHHHHHcCCChHH
Q 042728 303 RKQD--LLRIDMNSQKNFQIDALPPKEALQLFEEIVGD------STKISAFQSTANEIVERCGGLPVA 362 (486)
Q Consensus 303 R~~~--v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~------~~~~~~~~~~~~~i~~~~~GlPla 362 (486)
.+.. +.....+....+.+++|+.++...++.+.+.. .....-.++....|++.+.|..-.
T Consensus 146 enp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 146 ENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred CChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 3331 21112233567999999999999999887641 111122345678888889886543
No 44
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=1.1e-06 Score=85.70 Aligned_cols=197 Identities=12% Similarity=0.098 Sum_probs=115.7
Q ss_pred cCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHccC--CCeEEEEEeCCCCCHHHHHHHHH
Q 042728 155 KDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEENL--FDKVVMAEVTQTPDHHKIQNKLA 231 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~vs~~~~~~~~~~~i~ 231 (486)
.....++|.+.....|...+.++.. +.+.|+|+.|+||||+|..+++..-.... +... ............+.+.
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIA 96 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHH
Confidence 3466789999999999999987764 46889999999999999999988743210 1110 0011111112233332
Q ss_pred HHhC-------CC--CC-----CCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccccCCCCCcccccccC
Q 042728 232 FDLG-------ME--FG-----LNENEFQRAERLHERLK----KEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKD 291 (486)
Q Consensus 232 ~~l~-------~~--~~-----~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~ 291 (486)
..-. .+ .. ..-.. +.+..+.+++. .+++-++|+|+++... ..+.+...+..
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~v-d~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE-------- 167 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITV-DEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE-------- 167 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCH-HHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc--------
Confidence 2210 00 00 01112 33445555554 2466799999998653 22333222221
Q ss_pred CCCCcE-EEEEeCchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 292 DQRRCT-IILTSRKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 292 ~~~~s~-ilvTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
...++. |++|++...+.....+....+++.+++.++..+++........ -..+....+++.++|.|.....+
T Consensus 168 pp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 168 PPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 222344 4555444444332334557899999999999999988432111 22445778999999999866544
No 45
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.72 E-value=2.3e-07 Score=96.02 Aligned_cols=189 Identities=13% Similarity=0.162 Sum_probs=112.3
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHccC-------------------CCe
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEENL-------------------FDK 211 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~ 211 (486)
+.+.....++|.+..++.|.+++..++. +.+.++|+.|+||||+|+.+.+....... |.-
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D 89 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD 89 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc
Confidence 4455677899999999999999987765 46799999999999999999887532211 111
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc--cccccCCCCCcccccc
Q 042728 212 VVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE--LDKFGIPTGDVAEKDR 289 (486)
Q Consensus 212 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~ 289 (486)
++.++.+....+. .+++++... ...-..+++-++|+|+++.... .+.+...+..
T Consensus 90 vlEidaAs~~gVd-~IRelle~a-----------------~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE------ 145 (709)
T PRK08691 90 LLEIDAASNTGID-NIREVLENA-----------------QYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE------ 145 (709)
T ss_pred eEEEeccccCCHH-HHHHHHHHH-----------------HhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh------
Confidence 1222211111111 111111111 0000013557999999986532 2222222211
Q ss_pred cCCCCCcEEEEEeCch-hhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042728 290 KDDQRRCTIILTSRKQ-DLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVA 367 (486)
Q Consensus 290 ~~~~~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 367 (486)
....+++|++|.+. .+.....+....+.+.+++.++....+.+.+...... -..+....|++.++|.+.-+..+.
T Consensus 146 --Pp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~-id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 146 --PPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA-YEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred --CCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHhCCCHHHHHHHH
Confidence 23456666666443 3322223445678999999999999998877633222 224567889999999886554443
No 46
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.72 E-value=1.4e-07 Score=80.15 Aligned_cols=126 Identities=16% Similarity=0.129 Sum_probs=74.6
Q ss_pred ccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 042728 161 DSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGL 240 (486)
Q Consensus 161 ~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 240 (486)
.|++..+..+...+..+..+.+.|+|++|+|||++++.+++..... -..++++..++..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 4788899999999877667789999999999999999999887532 2456677665544332222111100
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc-----cccccccCCCCCcccccccCCCCCcEEEEEeCchh
Q 042728 241 NENEFQRAERLHERLKKEKQLLIILDNIWTK-----LELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQD 306 (486)
Q Consensus 241 ~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 306 (486)
............++.+|++||++.. ..+......... .. ....+..||+||....
T Consensus 72 ------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~---~~--~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLND---LR--IDRENVRVIGATNRPL 131 (151)
T ss_pred ------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCc---ee--ccCCCeEEEEecCccc
Confidence 0001111111246789999999854 112221111110 00 0145788888888663
No 47
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=4.6e-07 Score=93.95 Aligned_cols=201 Identities=12% Similarity=0.163 Sum_probs=114.3
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHccCC--CeEEEEEeCCCCCHHHHHH
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEENLF--DKVVMAEVTQTPDHHKIQN 228 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~vs~~~~~~~~~~ 228 (486)
+.+...+.++|.+..+..|.+++..++. +.+.++|+.|+||||+|+.+++...-.+.. .+.-. ..+..-...+
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~ 85 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACR 85 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHH
Confidence 3445677899999999999999987766 456899999999999999998776321100 00000 0000001111
Q ss_pred HHHHHh-----CCCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcE
Q 042728 229 KLAFDL-----GMEFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCT 297 (486)
Q Consensus 229 ~i~~~l-----~~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ 297 (486)
.|...- ..+.......++. ..+.+... .++.-++|+|+++... .++.+...+.. ....++
T Consensus 86 ~i~~g~h~D~~eldaas~~~Vd~i-Reli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE--------PP~~~~ 156 (618)
T PRK14951 86 DIDSGRFVDYTELDAASNRGVDEV-QQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE--------PPEYLK 156 (618)
T ss_pred HHHcCCCCceeecCcccccCHHHH-HHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc--------CCCCeE
Confidence 110000 0000001111221 22222221 1344589999998762 34444333332 334556
Q ss_pred EEEEe-CchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 298 IILTS-RKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 298 ilvTt-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
+|++| ....+.....+....+++.+++.++..+.+.+.+....... ..+....|++.++|.+.-+..+
T Consensus 157 fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i-e~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 157 FVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA-EPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred EEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 66555 44444332345568899999999999999988775332221 2456788999999977655444
No 48
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.71 E-value=1.2e-06 Score=81.79 Aligned_cols=194 Identities=17% Similarity=0.181 Sum_probs=124.3
Q ss_pred HHHHHHHHHHhccC---CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCC----eEEEEEeCCCCCHHHHHHHHHHHhCC
Q 042728 164 MKVFQDVMEALRDD---KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFD----KVVMAEVTQTPDHHKIQNKLAFDLGM 236 (486)
Q Consensus 164 ~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~----~~~wv~vs~~~~~~~~~~~i~~~l~~ 236 (486)
.+.++.|.+.+..+ ..+.+.|+|.+|+|||++++.+.........-+ .++.|.....++...++..|+.+++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 34556666666443 456799999999999999999997764321111 57888889999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc---------ccccccCCCCCcccccccCCCCCcEEEEEeCchhh
Q 042728 237 EFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL---------ELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDL 307 (486)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 307 (486)
+.....+...........++.-+--+||+|++++.- .++.+. .+.+ ...-+-|.+-|+...-
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK-~L~N--------eL~ipiV~vGt~~A~~ 193 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK-FLGN--------ELQIPIVGVGTREAYR 193 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH-HHhh--------ccCCCeEEeccHHHHH
Confidence 887666666666666667765455699999998741 111111 1111 2223446666655433
Q ss_pred hhh----hcCCcccEEcCCCChH-HHHHHHHHHhC----CCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 308 LRI----DMNSQKNFQIDALPPK-EALQLFEEIVG----DSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 308 ~~~----~~~~~~~~~l~~L~~~-e~~~Lf~~~~~----~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
+-. ..+....+.|+....+ +...|+...-. .....-...++++.|+..++|+.--+..+
T Consensus 194 al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 194 ALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 211 1123456677766654 44455433221 23333445678999999999986555444
No 49
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.70 E-value=8.1e-07 Score=87.92 Aligned_cols=187 Identities=13% Similarity=0.183 Sum_probs=112.5
Q ss_pred cccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHcc--------------------CCCe
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEEN--------------------LFDK 211 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~ 211 (486)
++.....++|.+..++.|.+++.++.. +.+.++|++|+||||+|+.+........ +++.
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 345567789999999999999977654 4678999999999999999998764221 1221
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc--cccccccCCCCCcccccc
Q 042728 212 VVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTK--LELDKFGIPTGDVAEKDR 289 (486)
Q Consensus 212 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~ 289 (486)
+++.-+...... ..+.+...+...+ .. +++-++|+|+++.. ...+.+...+..
T Consensus 89 -~~~~~~~~~~~~-~~~~l~~~~~~~p----------------~~-~~~~vviidea~~l~~~~~~~Ll~~le~------ 143 (355)
T TIGR02397 89 -IEIDAASNNGVD-DIREILDNVKYAP----------------SS-GKYKVYIIDEVHMLSKSAFNALLKTLEE------ 143 (355)
T ss_pred -EEeeccccCCHH-HHHHHHHHHhcCc----------------cc-CCceEEEEeChhhcCHHHHHHHHHHHhC------
Confidence 222222111111 1222222221110 11 34458899998755 223333222222
Q ss_pred cCCCCCcEEEEEeCchh-hhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042728 290 KDDQRRCTIILTSRKQD-LLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVA 367 (486)
Q Consensus 290 ~~~~~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 367 (486)
....+.+|++|.+.. +..........+++.+++.++..+++...+...... -.++.+..+++.++|.|..+....
T Consensus 144 --~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~-i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 144 --PPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK-IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred --CccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCChHHHHHHH
Confidence 334566666665443 222223345678999999999999998876532211 124677889999999987665544
No 50
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=3.9e-07 Score=93.24 Aligned_cols=189 Identities=15% Similarity=0.186 Sum_probs=114.3
Q ss_pred cccccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhHccC-------------------CC
Q 042728 151 HIQVKDFEAFDSRMKVFQDVMEALRDDKLN-IIGVHGMGGVGKTTIVKQVAKQVMEENL-------------------FD 210 (486)
Q Consensus 151 ~~~~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~ 210 (486)
.+.+.....++|.+..++.|.+++..+..+ .+.++|+.|+||||+|+.+++...-... |.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~ 88 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFP 88 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCc
Confidence 344556778999999999999999877664 4689999999999999999987643211 11
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCccccc
Q 042728 211 KVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKD 288 (486)
Q Consensus 211 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~ 288 (486)
-++.+..+....+.++ +++++.+...+ ..++.-++|+|+++... ..+.+...+..
T Consensus 89 d~~eidaas~~~v~~i-R~l~~~~~~~p-----------------~~~~~kV~iIDE~~~ls~~a~naLLk~LEe----- 145 (509)
T PRK14958 89 DLFEVDAASRTKVEDT-RELLDNIPYAP-----------------TKGRFKVYLIDEVHMLSGHSFNALLKTLEE----- 145 (509)
T ss_pred eEEEEcccccCCHHHH-HHHHHHHhhcc-----------------ccCCcEEEEEEChHhcCHHHHHHHHHHHhc-----
Confidence 1333332222222221 22222221110 12455689999998652 33333222222
Q ss_pred ccCCCCCcEEEEEeC-chhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 289 RKDDQRRCTIILTSR-KQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 289 ~~~~~~~s~ilvTtR-~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
....+++|++|. ...+.....+....+++.+++.++....+.+.+....... ..+....|++.++|.+.-+..+
T Consensus 146 ---pp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~-~~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 146 ---PPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF-ENAALDLLARAANGSVRDALSL 220 (509)
T ss_pred ---cCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHH
Confidence 334566665554 3333322334457789999999998888777665322221 2345678999999988654443
No 51
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=8.4e-07 Score=86.94 Aligned_cols=198 Identities=12% Similarity=0.115 Sum_probs=113.4
Q ss_pred cCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEE----EEEeCCCCCHHHHHHH
Q 042728 155 KDFEAFDSRMKVFQDVMEALRDDKLN-IIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVV----MAEVTQTPDHHKIQNK 229 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~----wv~vs~~~~~~~~~~~ 229 (486)
.....++|.+...+.|.+.+.+++.+ .+.++|+.|+||+|+|..+++..--+....... -.++.. ...-...+.
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~~~c~~c~~ 94 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-DPDHPVARR 94 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-CCCChHHHH
Confidence 34567899999999999999887654 588999999999999999998774322111000 000000 000011111
Q ss_pred HHHHhCCC-----C---CC-----CCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccccCCCCCccccccc
Q 042728 230 LAFDLGME-----F---GL-----NENEFQRAERLHERLK----KEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRK 290 (486)
Q Consensus 230 i~~~l~~~-----~---~~-----~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~ 290 (486)
+...-..+ . .. ..-..+.+..+.+++. .+++-++|+|+++..+ ..+.+...+..
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe------- 167 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE------- 167 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc-------
Confidence 11110000 0 00 0011223444555543 2456799999998652 23333222222
Q ss_pred CCCCCcEEEEEeCchh-hhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 291 DDQRRCTIILTSRKQD-LLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 291 ~~~~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
...++.+|++|.+.. +.....+....+.+.+++.++..+++....... + ......++..++|.|+....+
T Consensus 168 -pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~---~--~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 168 -PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL---P--DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred -CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---C--HHHHHHHHHHcCCCHHHHHHH
Confidence 334566666666553 333234556789999999999999998864311 1 122267899999999866544
No 52
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69 E-value=3.5e-07 Score=95.05 Aligned_cols=199 Identities=14% Similarity=0.142 Sum_probs=114.3
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKLN-IIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
+.+.....++|.+..++.|.+.+..++.. .+.++|+.|+||||+|+.+++.......+.. .....-...+.|
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-------~pCg~C~~C~~i 82 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-------TPCGECDNCREI 82 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-------CCCCCCHHHHHH
Confidence 34556778999999999999999877664 4689999999999999999887643211100 000000111111
Q ss_pred HHHhC-----CCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEE
Q 042728 231 AFDLG-----MEFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTII 299 (486)
Q Consensus 231 ~~~l~-----~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~il 299 (486)
...-. .........++ ...+.+.+. .+++-++|+|+++... ..+.+...+.. ....+++|
T Consensus 83 ~~g~~~D~ieidaas~~~Vdd-iR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE--------Pp~~v~FI 153 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVED-TRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE--------PPEHVKFL 153 (647)
T ss_pred HcCCCCCceeecccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc--------CCCCeEEE
Confidence 11000 00000011122 222222222 2456799999998652 33433222222 33355555
Q ss_pred EE-eCchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042728 300 LT-SRKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVA 367 (486)
Q Consensus 300 vT-tR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 367 (486)
++ |....+.....+.+..|++.+|+.++....+.+.+..... ....+....|++.++|.|--+..+.
T Consensus 154 L~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i-~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 154 LATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI-PFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred EecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 54 4444443223445678999999999999999887642221 2224566789999999887544443
No 53
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.67 E-value=6e-07 Score=94.22 Aligned_cols=206 Identities=13% Similarity=0.080 Sum_probs=118.1
Q ss_pred ccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCC---CeEEEEEeCCC---CCHHHHH
Q 042728 154 VKDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLF---DKVVMAEVTQT---PDHHKIQ 227 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~vs~~---~~~~~~~ 227 (486)
+.+.+.++|++..+..+.+.+.......+.|+|++|+||||||+.+++.......+ ...-|+.+... .+...+.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~ 229 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVT 229 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHh
Confidence 44556789999999998888876667789999999999999999998876543333 12334444321 1222221
Q ss_pred HHH---------------HHHhCCCC-----------------CCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc--cc
Q 042728 228 NKL---------------AFDLGMEF-----------------GLNENEFQRAERLHERLKKEKQLLIILDNIWTK--LE 273 (486)
Q Consensus 228 ~~i---------------~~~l~~~~-----------------~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~--~~ 273 (486)
..+ +...+... +...-....+..+.+.+.. +++.++-|+.|.. ..
T Consensus 230 ~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~-~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 230 NPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLED-KRVEFSSSYYDPDDPNV 308 (615)
T ss_pred HHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhh-CeEEeecceeccCCccc
Confidence 111 11111110 0011122345666677763 6677776655543 23
Q ss_pred cccccCCCCCcccccccCCCCCcEEEE--EeCchhh-hhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHH
Q 042728 274 LDKFGIPTGDVAEKDRKDDQRRCTIIL--TSRKQDL-LRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTAN 350 (486)
Q Consensus 274 ~~~l~~~~~~~~~~~~~~~~~~s~ilv--TtR~~~v-~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~ 350 (486)
|..+...+.. ..+...+++ ||++... ..........+.+.+++.+|.+.++.+.+...... -..++.+
T Consensus 309 ~~~ik~~~~~--------~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~-ls~eal~ 379 (615)
T TIGR02903 309 PKYIKKLFEE--------GAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH-LAAGVEE 379 (615)
T ss_pred chhhhhhccc--------CccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHH
Confidence 5555333332 333333444 5564432 11112334578899999999999999987632211 1245566
Q ss_pred HHHHHcCCChHHHHHHHHH
Q 042728 351 EIVERCGGLPVALSTVANA 369 (486)
Q Consensus 351 ~i~~~~~GlPlai~~~~~~ 369 (486)
.|.+.+..-+.++..++..
T Consensus 380 ~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 380 LIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHCCCcHHHHHHHHHHH
Confidence 6777666667777766554
No 54
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.65 E-value=1e-06 Score=78.71 Aligned_cols=160 Identities=19% Similarity=0.160 Sum_probs=94.0
Q ss_pred HHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHc--------------------cCCCeEEEEEeCC-CCCHHHH
Q 042728 169 DVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEE--------------------NLFDKVVMAEVTQ-TPDHHKI 226 (486)
Q Consensus 169 ~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~vs~-~~~~~~~ 226 (486)
.|.+.+..+.. +.+.++|+.|+||||+|+.+.+..... .+.+. .++.... .... +.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~-~~ 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKV-DQ 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCH-HH
Confidence 45556655555 678999999999999999998886432 12222 2221111 1111 12
Q ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEEEeCc
Q 042728 227 QNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIILTSRK 304 (486)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~ 304 (486)
.+++.+.+...+ . .+.+-++|+|+++... ..+.+...+.. ....+.+|++|++
T Consensus 81 i~~i~~~~~~~~----------------~-~~~~kviiide~~~l~~~~~~~Ll~~le~--------~~~~~~~il~~~~ 135 (188)
T TIGR00678 81 VRELVEFLSRTP----------------Q-ESGRRVVIIEDAERMNEAAANALLKTLEE--------PPPNTLFILITPS 135 (188)
T ss_pred HHHHHHHHccCc----------------c-cCCeEEEEEechhhhCHHHHHHHHHHhcC--------CCCCeEEEEEECC
Confidence 222222221110 0 1356789999997652 23333333322 3345666666654
Q ss_pred h-hhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHH
Q 042728 305 Q-DLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVA 362 (486)
Q Consensus 305 ~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPla 362 (486)
. .+..........+++.+++.++..+.+.+. + . ..+.+..|++.++|.|..
T Consensus 136 ~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g--i----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 136 PEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G--I----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred hHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C--C----CHHHHHHHHHHcCCCccc
Confidence 4 222212334568999999999999999886 2 1 145688999999998853
No 55
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=6.1e-07 Score=91.97 Aligned_cols=200 Identities=15% Similarity=0.169 Sum_probs=110.9
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
..|.....++|++..++.|.+++..+.. +.+.++|+.|+||||+|+.+++...... |.... ....-...+.+
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i 82 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESI 82 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHH
Confidence 3455677899999999999999976554 4688999999999999999998764221 11000 00111111111
Q ss_pred HHHhCC-----CCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCc--cccccccCCCCCcccccccCCCCCcEEE
Q 042728 231 AFDLGM-----EFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTK--LELDKFGIPTGDVAEKDRKDDQRRCTII 299 (486)
Q Consensus 231 ~~~l~~-----~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~il 299 (486)
...... ........++ ...+.+.+. ..++-++|+|+++.. ..++.+...+.. ....+.+|
T Consensus 83 ~~~~h~DiieIdaas~igVd~-IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE--------Pp~~tvfI 153 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDE-IRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE--------PPKHVVFI 153 (605)
T ss_pred HcCCCCceEEeccccccCHHH-HHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh--------CCCcEEEE
Confidence 111000 0000011111 112222111 023347999999865 233333222221 22345454
Q ss_pred E-EeCchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChH-HHHHHHH
Q 042728 300 L-TSRKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPV-ALSTVAN 368 (486)
Q Consensus 300 v-TtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~~~ 368 (486)
+ |+....+.......+..+++.+++.++....+...+...... -..+.+..+++.++|.+. |+..+-.
T Consensus 154 L~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~-Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 154 FATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK-IEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred EECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4 444444432234456789999999999999988876532211 123567889999999665 4444443
No 56
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.65 E-value=6.7e-07 Score=82.66 Aligned_cols=174 Identities=12% Similarity=0.102 Sum_probs=102.8
Q ss_pred cccc-c-HHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 042728 158 EAFD-S-RMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLG 235 (486)
Q Consensus 158 ~~~~-g-R~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (486)
++|+ | -...+..+..+......+.+.|+|++|+|||+|++.+++..... -..+.|+++.....
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~------------- 86 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW------------- 86 (235)
T ss_pred cccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh-------------
Confidence 4454 4 33455555555545555688999999999999999999887643 34566776543100
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc---ccccccc-CCCCCcccccccCCCCCcEEEEEeCchhhhh--
Q 042728 236 MEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTK---LELDKFG-IPTGDVAEKDRKDDQRRCTIILTSRKQDLLR-- 309 (486)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~---~~~~~l~-~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~-- 309 (486)
. ...+.+.+. +.-+|++||+... ..|+... ..+.. .. ...+.++|+||+.....-
T Consensus 87 -------~----~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~----~~--e~g~~~li~ts~~~p~~l~~ 147 (235)
T PRK08084 87 -------F----VPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNR----IL--ESGRTRLLITGDRPPRQLNL 147 (235)
T ss_pred -------h----hHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHH----HH--HcCCCeEEEeCCCChHHcCc
Confidence 0 011222222 1248899999754 2333211 11110 00 122347999998664321
Q ss_pred ------hhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 310 ------IDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 310 ------~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
..+.....+++++++.++-.+++.+.+.... -.-.+++..-|++.+.|..-.+..+
T Consensus 148 ~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 148 GLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred ccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHHH
Confidence 1234457899999999999999988665322 2223567888888888765544443
No 57
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=6.3e-07 Score=89.53 Aligned_cols=204 Identities=16% Similarity=0.194 Sum_probs=113.4
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEE-eCCCCCHHHHHHH
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKLN-IIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAE-VTQTPDHHKIQNK 229 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-vs~~~~~~~~~~~ 229 (486)
..|.....++|.+..++.|..++.++..+ .+.++|+.|+||||+|..+++...-...+....|.. .......-...+.
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence 34455678999999999999999877664 488999999999999999998774321111111110 0000000011111
Q ss_pred HHHHhCCC-----CCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEE
Q 042728 230 LAFDLGME-----FGLNENEFQRAERLHERLK----KEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTI 298 (486)
Q Consensus 230 i~~~l~~~-----~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~i 298 (486)
+......+ .......++ +..+.+.+. .+++-++|+|+++... .++.+...+.. ....+.+
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~-Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe--------p~~~t~~ 160 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDD-IRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE--------PPPHAIF 160 (397)
T ss_pred HhcCCCCCeEeecccccCCHHH-HHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc--------CCCCeEE
Confidence 11100000 000111222 222333332 1345688999998653 34444333322 3345555
Q ss_pred EEEe-CchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHH
Q 042728 299 ILTS-RKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALST 365 (486)
Q Consensus 299 lvTt-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 365 (486)
|++| +...+..........+++.+++.++....+...+..... .-..+.+..|++.++|.+--+..
T Consensus 161 Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 161 IFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI-SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred EEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 5554 434333212233467999999999999888887642211 12245778899999998764444
No 58
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=1.5e-06 Score=85.87 Aligned_cols=173 Identities=10% Similarity=0.064 Sum_probs=104.3
Q ss_pred ccccccHHHHHHHHHHHhccCC----------ccEEEEEcCCCCcHHHHHHHHHHHHhHc-------------------c
Q 042728 157 FEAFDSRMKVFQDVMEALRDDK----------LNIIGVHGMGGVGKTTIVKQVAKQVMEE-------------------N 207 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~~~----------~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~ 207 (486)
...++|.+..++.|.+++..+. .+.+.++|++|+|||++|..++....-. .
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 3468899999999999997653 4568899999999999999998765322 1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccccCCC
Q 042728 208 LFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTKL--ELDKFGIPT 281 (486)
Q Consensus 208 ~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~ 281 (486)
|.+. .++..... ....++ +..+.+.+. .+++-++|+|+++... ..+.+...+
T Consensus 84 hpD~-~~i~~~~~--------------------~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~L 141 (394)
T PRK07940 84 HPDV-RVVAPEGL--------------------SIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAV 141 (394)
T ss_pred CCCE-EEeccccc--------------------cCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHh
Confidence 1221 11111100 011111 222223222 1345688889998652 223232222
Q ss_pred CCcccccccCCCCCcEEEEEeCch-hhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCh
Q 042728 282 GDVAEKDRKDDQRRCTIILTSRKQ-DLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLP 360 (486)
Q Consensus 282 ~~~~~~~~~~~~~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 360 (486)
.. ...++.+|++|.+. .+.....+....+.+.+++.++..+.+....+ . ..+.+..++..++|.|
T Consensus 142 Ee--------p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---~---~~~~a~~la~~s~G~~ 207 (394)
T PRK07940 142 EE--------PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---V---DPETARRAARASQGHI 207 (394)
T ss_pred hc--------CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---C---CHHHHHHHHHHcCCCH
Confidence 22 33455565555553 44432345567899999999999988875432 1 1345778999999999
Q ss_pred HHHHH
Q 042728 361 VALST 365 (486)
Q Consensus 361 lai~~ 365 (486)
.....
T Consensus 208 ~~A~~ 212 (394)
T PRK07940 208 GRARR 212 (394)
T ss_pred HHHHH
Confidence 75433
No 59
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.62 E-value=6.6e-08 Score=89.38 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=64.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC--CCHHHHHHHH-----HHHhCCCCCCCC-CHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT--PDHHKIQNKL-----AFDLGMEFGLNE-NEFQRAE 249 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i-----~~~l~~~~~~~~-~~~~~~~ 249 (486)
.-..+.|+|++|+|||||++.+++..... +|+.++|+.+.+. .++.++++.+ +.+++.+..... .......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999988765 8999999997776 7899999998 333332110000 0111223
Q ss_pred HHHHHHhcCCcEEEEEeCCCCc
Q 042728 250 RLHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 250 ~l~~~L~~~kr~LlVlDdv~~~ 271 (486)
....+...+++.+|++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 3333333478999999999754
No 60
>PF14516 AAA_35: AAA-like domain
Probab=98.62 E-value=1.2e-05 Score=78.32 Aligned_cols=205 Identities=15% Similarity=0.212 Sum_probs=120.6
Q ss_pred ccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC-----CCHHHHHHHH-
Q 042728 157 FEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT-----PDHHKIQNKL- 230 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-----~~~~~~~~~i- 230 (486)
.+.++.|...-+++.+.+.+++ ..+.|.|+-.+|||||...+.+..... .+ .++++++..- .+...+++.+
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~G-~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQPG-SYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CCcccCchHHHHHHHHHHhcCC-CEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHHHH
Confidence 4456789877777887776643 578999999999999999999888765 23 4557776542 2455555444
Q ss_pred ---HHHhCCCCCC-------CCCHHHHHHHHHHHH-hc-CCcEEEEEeCCCCccccccccCCCCCcccccccC-------
Q 042728 231 ---AFDLGMEFGL-------NENEFQRAERLHERL-KK-EKQLLIILDNIWTKLELDKFGIPTGDVAEKDRKD------- 291 (486)
Q Consensus 231 ---~~~l~~~~~~-------~~~~~~~~~~l~~~L-~~-~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~------- 291 (486)
.++++..... ..+.......+.+.+ .. +++.+|+||+++..-....+. .+|+..++.+
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~---~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIA---DDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchH---HHHHHHHHHHHHhcccC
Confidence 4455543211 112222233344432 22 588999999998552211000 0011111100
Q ss_pred CCCCcEEEEEeCchh--hhh----hhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHH
Q 042728 292 DQRRCTIILTSRKQD--LLR----IDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALST 365 (486)
Q Consensus 292 ~~~~s~ilvTtR~~~--v~~----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 365 (486)
.....-.++...+.. ... ........+.|++|+.+|...|+..+-.. . -....++|...+||+|.-+..
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~---~~~~~~~l~~~tgGhP~Lv~~ 238 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F---SQEQLEQLMDWTGGHPYLVQK 238 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C---CHHHHHHHHHHHCCCHHHHHH
Confidence 001111122222111 110 11233457999999999999998875322 1 122388999999999999999
Q ss_pred HHHHhcC
Q 042728 366 VANALKT 372 (486)
Q Consensus 366 ~~~~L~~ 372 (486)
++..+..
T Consensus 239 ~~~~l~~ 245 (331)
T PF14516_consen 239 ACYLLVE 245 (331)
T ss_pred HHHHHHH
Confidence 9999974
No 61
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=8.5e-07 Score=91.34 Aligned_cols=187 Identities=17% Similarity=0.230 Sum_probs=110.5
Q ss_pred cccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhHcc-------------------CCCeE
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALRDDKLN-IIGVHGMGGVGKTTIVKQVAKQVMEEN-------------------LFDKV 212 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~ 212 (486)
.+.....++|.+..++.|.+++..++.+ .+.++|+.|+||||+|+.+++...-.. .|.-+
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 3455678999999999999999877654 468999999999999999988763211 01112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCccccccc
Q 042728 213 VMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRK 290 (486)
Q Consensus 213 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~ 290 (486)
+++..+....... .++++..+...+ ..+++-++|+|+++... ..+.+...+..
T Consensus 91 ~ei~~~~~~~vd~-ir~l~~~~~~~p-----------------~~~~~kVvIIDEad~ls~~a~naLLK~LEe------- 145 (527)
T PRK14969 91 IEVDAASNTQVDA-MRELLDNAQYAP-----------------TRGRFKVYIIDEVHMLSKSAFNAMLKTLEE------- 145 (527)
T ss_pred eEeeccccCCHHH-HHHHHHHHhhCc-----------------ccCCceEEEEcCcccCCHHHHHHHHHHHhC-------
Confidence 2222221111111 112222111100 01456799999998663 23333222222
Q ss_pred CCCCCcEEEEEeCc-hhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChH-HHHHH
Q 042728 291 DDQRRCTIILTSRK-QDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPV-ALSTV 366 (486)
Q Consensus 291 ~~~~~s~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~ 366 (486)
....+.+|++|.+ ..+.....+....+++.+++.++..+.+.+.+...... ...+....|++.++|.+- ++..+
T Consensus 146 -pp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~-~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 146 -PPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP-FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred -CCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3335555555533 33332123345689999999999999888876432221 223566889999999775 44444
No 62
>PRK09087 hypothetical protein; Validated
Probab=98.61 E-value=6.6e-07 Score=81.94 Aligned_cols=146 Identities=12% Similarity=0.069 Sum_probs=87.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKK 257 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (486)
..+.+.|+|++|+|||+|++.+++... ..|++.. .+... +...+.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~---------------------~~~~~~~ 88 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSD---------------------AANAAAE 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchH---------------------HHHhhhc
Confidence 346689999999999999998876532 1233321 11111 1112221
Q ss_pred CCcEEEEEeCCCCccc-cccccCCCCCcccccccCCCCCcEEEEEeCchhhh--------hhhcCCcccEEcCCCChHHH
Q 042728 258 EKQLLIILDNIWTKLE-LDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLL--------RIDMNSQKNFQIDALPPKEA 328 (486)
Q Consensus 258 ~kr~LlVlDdv~~~~~-~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~~e~ 328 (486)
-+|++||+..... -..+...+. .....|..+|+|++..+-. ...+.....+++++++.++-
T Consensus 89 ---~~l~iDDi~~~~~~~~~lf~l~n-------~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~ 158 (226)
T PRK09087 89 ---GPVLIEDIDAGGFDETGLFHLIN-------SVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALL 158 (226)
T ss_pred ---CeEEEECCCCCCCCHHHHHHHHH-------HHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHH
Confidence 2788899965311 011111110 1133467799988754321 11234557899999999999
Q ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHH
Q 042728 329 LQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVAN 368 (486)
Q Consensus 329 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~ 368 (486)
.+++++.+.... ..-.+++...|++.+.|..-.+..+..
T Consensus 159 ~~iL~~~~~~~~-~~l~~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 159 SQVIFKLFADRQ-LYVDPHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999886422 122356788899988887766664433
No 63
>PRK08727 hypothetical protein; Validated
Probab=98.60 E-value=1.3e-06 Score=80.63 Aligned_cols=172 Identities=11% Similarity=0.096 Sum_probs=100.2
Q ss_pred ccccccHH-HHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 042728 157 FEAFDSRM-KVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLG 235 (486)
Q Consensus 157 ~~~~~gR~-~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (486)
.++|++.. ..+..+...........+.|+|++|+|||+|++.+++....+ ...+.|+++.+ ....+
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~----- 84 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRL----- 84 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhH-----
Confidence 45565433 334444333333344569999999999999999999887655 33566765422 11111
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc---ccccccCCCCCcccccccCCCCCcEEEEEeCchhhhh---
Q 042728 236 MEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL---ELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLLR--- 309 (486)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~---~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~--- 309 (486)
....+.+. +.-+||+||+.... .|......+ ... ...++..||+||+...-.-
T Consensus 85 -------------~~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~l---~n~---~~~~~~~vI~ts~~~p~~l~~~ 143 (233)
T PRK08727 85 -------------RDALEALE--GRSLVALDGLESIAGQREDEVALFDF---HNR---ARAAGITLLYTARQMPDGLALV 143 (233)
T ss_pred -------------HHHHHHHh--cCCEEEEeCcccccCChHHHHHHHHH---HHH---HHHcCCeEEEECCCChhhhhhh
Confidence 11222333 34699999997542 222111111 000 0223567999998654211
Q ss_pred -----hhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHH
Q 042728 310 -----IDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVAL 363 (486)
Q Consensus 310 -----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 363 (486)
..+.....+++++++.++-.+++.+++.... -.-.++....|++.++|-.-.+
T Consensus 144 ~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~-l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 144 LPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG-LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred hHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhCCCCHHHH
Confidence 0122346899999999999999998765321 1222456778888888755444
No 64
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=2.1e-06 Score=85.28 Aligned_cols=185 Identities=14% Similarity=0.187 Sum_probs=107.5
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHcc------CCCe-EEEEEeCCCCCH
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEEN------LFDK-VVMAEVTQTPDH 223 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~------~f~~-~~wv~vs~~~~~ 223 (486)
..|.....++|.+...+.+.+.+..+.. +.+.++|++|+||||+|..+.+...... .|.. ++-++.......
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV 90 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH
Confidence 3445567889999999999999977654 4788999999999999999987764311 1111 111111111111
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEEE
Q 042728 224 HKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIILT 301 (486)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvT 301 (486)
. -...+.+.+...+ .. +++-++++|+++... .++.+...+.. ....+.+|++
T Consensus 91 ~-~i~~l~~~~~~~p----------------~~-~~~kiviIDE~~~l~~~~~~~ll~~le~--------~~~~~~~Il~ 144 (367)
T PRK14970 91 D-DIRNLIDQVRIPP----------------QT-GKYKIYIIDEVHMLSSAAFNAFLKTLEE--------PPAHAIFILA 144 (367)
T ss_pred H-HHHHHHHHHhhcc----------------cc-CCcEEEEEeChhhcCHHHHHHHHHHHhC--------CCCceEEEEE
Confidence 1 1112222211100 11 345689999997542 23333222211 2234555555
Q ss_pred e-CchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHH
Q 042728 302 S-RKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVAL 363 (486)
Q Consensus 302 t-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 363 (486)
| ....+..........+++.+++.++....+...+...... -..+....|++.++|.+-.+
T Consensus 145 ~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~-i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 145 TTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK-FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred eCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhCCCCHHHH
Confidence 4 3333322223445679999999999999988876532221 12467788999999976533
No 65
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=1.1e-06 Score=90.48 Aligned_cols=203 Identities=16% Similarity=0.179 Sum_probs=115.2
Q ss_pred ccccCccccccHHHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDK-LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
+.+.....++|.+..++.|.+.+..++ .+.+.++|+.|+||||+|+.+++...-....+. ..+..-...+.|
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i 82 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKV 82 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHH
Confidence 344556788999999999999887765 477889999999999999999987643211100 000000111111
Q ss_pred HHHhCC-----CCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCc--cccccccCCCCCcccccccCCCCCcEEE
Q 042728 231 AFDLGM-----EFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTK--LELDKFGIPTGDVAEKDRKDDQRRCTII 299 (486)
Q Consensus 231 ~~~l~~-----~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~il 299 (486)
...... ........++ +..+.+.+. .+++-++|+|+++.. ...+.+...+.. ......+|
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE--------P~~~~ifI 153 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE--------PPARVTFV 153 (624)
T ss_pred hcCCCCceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc--------cCCCEEEE
Confidence 110000 0000011111 112222221 245679999999866 233444332221 22345555
Q ss_pred EEeCc-hhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCh-HHHHHHHHHhc
Q 042728 300 LTSRK-QDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLP-VALSTVANALK 371 (486)
Q Consensus 300 vTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP-lai~~~~~~L~ 371 (486)
++|.. ..+..........+++.+++.++....+...+..... .-..+.++.|++.++|.+ .|+..+..++.
T Consensus 154 LaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi-~id~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 154 LATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV-DYDPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred EecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 54544 4443222344568999999999999999886653221 122456788999999965 67777765543
No 66
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=1.4e-06 Score=93.66 Aligned_cols=180 Identities=13% Similarity=0.151 Sum_probs=109.9
Q ss_pred cccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhHccCCC---------------------
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALRDDKLN-IIGVHGMGGVGKTTIVKQVAKQVMEENLFD--------------------- 210 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--------------------- 210 (486)
.+.....++|.+..++.|..++..+++. .+.++|+.|+||||+|+.+.+.+.-.....
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 3445678999999999999999877664 578999999999999999998774211110
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCc--cccccccCCCCCc
Q 042728 211 KVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTK--LELDKFGIPTGDV 284 (486)
Q Consensus 211 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~ 284 (486)
.+++++..... ..++. ..+.+.+. .++.-++|||+++.. ...+.|...+..
T Consensus 90 dv~eidaas~~---------------------~Vd~i-R~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE- 146 (824)
T PRK07764 90 DVTEIDAASHG---------------------GVDDA-RELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE- 146 (824)
T ss_pred cEEEecccccC---------------------CHHHH-HHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC-
Confidence 01122111111 11111 11222111 135568899999866 234444333332
Q ss_pred ccccccCCCCCcEEEEEe-CchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHH
Q 042728 285 AEKDRKDDQRRCTIILTS-RKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVAL 363 (486)
Q Consensus 285 ~~~~~~~~~~~s~ilvTt-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 363 (486)
....+.+|++| ....+.....+....|++.+++.++..+++.+.+...... --.+....|++.++|.+..+
T Consensus 147 -------pP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~-id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 147 -------PPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP-VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred -------CCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 33455555555 4444443234556789999999999999988876432221 12345678999999988433
No 67
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=1.7e-06 Score=89.89 Aligned_cols=202 Identities=9% Similarity=0.103 Sum_probs=115.5
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHccCCC--eEEEEEeCCCCCHHHHHH
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEENLFD--KVVMAEVTQTPDHHKIQN 228 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~vs~~~~~~~~~~ 228 (486)
+.+.....++|.+..++.|.+++..++. +.+.++|+.|+||||+|+.+++...-..... ...+- ....-.-.+
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~ 93 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQ 93 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHH
Confidence 3445567899999999999999987765 4688999999999999999998764221110 00000 000001111
Q ss_pred HHHHHhCC-----CCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcE
Q 042728 229 KLAFDLGM-----EFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCT 297 (486)
Q Consensus 229 ~i~~~l~~-----~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ 297 (486)
.|...-.. ........++ +..+.+.+. ..++-++|+|+++... ..+.+...+.. ...++.
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~-IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe--------Pp~~~~ 164 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDD-IREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE--------PPPHVK 164 (598)
T ss_pred HHhcCCCCceEEecccccCCHHH-HHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh--------CCCCeE
Confidence 11111100 0000111222 222333322 1345689999997653 23333322222 334566
Q ss_pred EEEEe-CchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042728 298 IILTS-RKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVA 367 (486)
Q Consensus 298 ilvTt-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 367 (486)
+|++| ....+.....+.+..+++.+++.++....+.+.+...... --.+....|++.++|.+.-+....
T Consensus 165 fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~-i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 165 FIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE-VEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred EEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 65544 4444433233455789999999999999998877532221 123567889999999987665544
No 68
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.55 E-value=6.2e-07 Score=82.43 Aligned_cols=192 Identities=18% Similarity=0.149 Sum_probs=120.2
Q ss_pred ccccccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeE-EEEEeCCCCCHHHHHH
Q 042728 150 EHIQVKDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKV-VMAEVTQTPDHHKIQN 228 (486)
Q Consensus 150 ~~~~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~-~wv~vs~~~~~~~~~~ 228 (486)
....+...+.++|.+..+.-|.+.+.....+....+|++|.|||+-|..++...-..+.|.+. +=.++|......-+-.
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~ 107 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVRE 107 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhh
Confidence 344555677899999999999999988788899999999999999999999887655556543 3345554432220000
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHh-cCCc-EEEEEeCCCCc--cccccccCCCCCcccccccCCCCCcEEE-EEeC
Q 042728 229 KLAFDLGMEFGLNENEFQRAERLHERLK-KEKQ-LLIILDNIWTK--LELDKFGIPTGDVAEKDRKDDQRRCTII-LTSR 303 (486)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~-~~kr-~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~il-vTtR 303 (486)
.+ .+............. .-++ -.+|||+++.. +.|..+...... ....++.+ ||+-
T Consensus 108 Ki-----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~--------~s~~trFiLIcny 168 (346)
T KOG0989|consen 108 KI-----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED--------FSRTTRFILICNY 168 (346)
T ss_pred hh-----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc--------cccceEEEEEcCC
Confidence 00 000100000000000 0233 47889999876 567777544433 44456554 4444
Q ss_pred chhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChH
Q 042728 304 KQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPV 361 (486)
Q Consensus 304 ~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl 361 (486)
-..+.....+....++.++|..++...-++..+..+...-+ .+..+.|++.++|---
T Consensus 169 lsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 169 LSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID-DDALKLIAKISDGDLR 225 (346)
T ss_pred hhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHH
Confidence 44333323345567999999999999998888764332222 4567889999999543
No 69
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.53 E-value=1.5e-06 Score=80.10 Aligned_cols=174 Identities=7% Similarity=0.082 Sum_probs=98.7
Q ss_pred ccccc-cH-HHHHHHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 042728 157 FEAFD-SR-MKVFQDVMEALRD-DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFD 233 (486)
Q Consensus 157 ~~~~~-gR-~~~~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 233 (486)
.++|+ |. +..+..+.++... .....+.|+|++|+|||+||+.+++.....+ ..+.+++...... .
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~--~~~~~i~~~~~~~------~---- 84 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG--RNARYLDAASPLL------A---- 84 (227)
T ss_pred hcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEehHHhHH------H----
Confidence 44555 44 3344455555432 3446788999999999999999998865431 2345554433110 0
Q ss_pred hCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccccc--cccCCCCCcccccccCCCCCc-EEEEEeCchhhhhh
Q 042728 234 LGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLELD--KFGIPTGDVAEKDRKDDQRRC-TIILTSRKQDLLRI 310 (486)
Q Consensus 234 l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~--~l~~~~~~~~~~~~~~~~~~s-~ilvTtR~~~v~~~ 310 (486)
+ .... ..-+||+||++....+. .+...+.. ....+. .+|+|++.......
T Consensus 85 ~------------------~~~~--~~~~liiDdi~~l~~~~~~~L~~~~~~-------~~~~~~~~vl~~~~~~~~~~~ 137 (227)
T PRK08903 85 F------------------DFDP--EAELYAVDDVERLDDAQQIALFNLFNR-------VRAHGQGALLVAGPAAPLALP 137 (227)
T ss_pred H------------------hhcc--cCCEEEEeChhhcCchHHHHHHHHHHH-------HHHcCCcEEEEeCCCCHHhCC
Confidence 0 1111 23478899997543221 11111110 012233 46777665432210
Q ss_pred -------hcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHh
Q 042728 311 -------DMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANAL 370 (486)
Q Consensus 311 -------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L 370 (486)
.+.....+++++++.++-..++.+.+.... ..--++..+.+++.+.|++..+..+...+
T Consensus 138 l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 138 LREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG-LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 122246899999999887777776543221 12234677888889999998877766554
No 70
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=4.4e-06 Score=85.18 Aligned_cols=189 Identities=13% Similarity=0.172 Sum_probs=112.6
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhHccCCC-------------------e
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKLN-IIGVHGMGGVGKTTIVKQVAKQVMEENLFD-------------------K 211 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-------------------~ 211 (486)
++|.....++|.+...+.|...+..+..+ ...++|+.|+||||+|+.+++..-.....+ -
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d 87 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID 87 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe
Confidence 34456778999999999999999777665 568999999999999999988763211100 1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCcccccc
Q 042728 212 VVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDR 289 (486)
Q Consensus 212 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~ 289 (486)
++.+..+.......+. +++......+ . .+++-++|+|+++... ..+.+...+..
T Consensus 88 v~eldaas~~gId~IR-elie~~~~~P----------------~-~~~~KVvIIDEad~Lt~~A~NALLK~LEE------ 143 (535)
T PRK08451 88 IIEMDAASNRGIDDIR-ELIEQTKYKP----------------S-MARFKIFIIDEVHMLTKEAFNALLKTLEE------ 143 (535)
T ss_pred EEEeccccccCHHHHH-HHHHHHhhCc----------------c-cCCeEEEEEECcccCCHHHHHHHHHHHhh------
Confidence 1222211111121111 1111111000 0 1345689999998652 23333222222
Q ss_pred cCCCCCcEEEEEeCch-hhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042728 290 KDDQRRCTIILTSRKQ-DLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVA 367 (486)
Q Consensus 290 ~~~~~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 367 (486)
....+.+|++|.+. .+..........+++.+++.++....+...+...... -..+.+..|++.++|.+.-+..+.
T Consensus 144 --pp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~-i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 144 --PPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS-YEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred --cCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 33456666666543 2222123445789999999999999988776533222 224577889999999886555443
No 71
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=3.7e-06 Score=86.93 Aligned_cols=200 Identities=15% Similarity=0.174 Sum_probs=112.1
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCccE-EEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKLNI-IGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
+.+.....++|.+..++.|.+++.+++..- +.++|+.|+||||+|+.+++...-....+. -.+ ..-.....|
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~---~pC----g~C~~C~~i 79 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTA---TPC----GVCESCVAL 79 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC---Ccc----cccHHHHHh
Confidence 345567789999999999999998876654 689999999999999999987642111100 000 000000111
Q ss_pred HHHhC-------CCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCc--cccccccCCCCCcccccccCCCCCcE
Q 042728 231 AFDLG-------MEFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTK--LELDKFGIPTGDVAEKDRKDDQRRCT 297 (486)
Q Consensus 231 ~~~l~-------~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ 297 (486)
...-+ .+.......++ ...+.+.+. .+++-++|+|+++.. ...+.+...+.. ....+.
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~-iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE--------pp~~~~ 150 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDD-TRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE--------PPEHLI 150 (584)
T ss_pred hcccCCCceEEEeccccccCHHH-HHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc--------CCCCeE
Confidence 00000 00000011111 112222211 134568999999865 233333333322 333555
Q ss_pred EEE-EeCchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChH-HHHHHHH
Q 042728 298 IIL-TSRKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPV-ALSTVAN 368 (486)
Q Consensus 298 ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~~~ 368 (486)
+|+ ||....+.....+....+++.+++.++..+.+.+.+...... -..+....|++.++|.+- ++..+-.
T Consensus 151 fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~-i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 151 FIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV-VDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred EEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 554 544444443234456789999999999998888766532221 123466778999999775 4444433
No 72
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.50 E-value=1.9e-06 Score=93.60 Aligned_cols=182 Identities=12% Similarity=0.156 Sum_probs=104.1
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCC----CeEE-EEEeCCCCCHHHHHHH
Q 042728 155 KDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLF----DKVV-MAEVTQTPDHHKIQNK 229 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~-wv~vs~~~~~~~~~~~ 229 (486)
...++++||+.++.++++.|.......+.++|++|+||||+|..+++........ +..+ .+.++.-..
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a------- 256 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA------- 256 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc-------
Confidence 3457899999999999999977766778899999999999999999887543211 1222 232221000
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEEEeCCCCccc-------cc--cccCCCCCcccccccCCCCCcEEE
Q 042728 230 LAFDLGMEFGLNENEFQRAERLHERLK-KEKQLLIILDNIWTKLE-------LD--KFGIPTGDVAEKDRKDDQRRCTII 299 (486)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~l~~~L~-~~kr~LlVlDdv~~~~~-------~~--~l~~~~~~~~~~~~~~~~~~s~il 299 (486)
+ .......+.....+.+.+. .+++.+|++|+++.... -+ .+..|.- .....++|
T Consensus 257 -----g--~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l---------~~G~l~~I 320 (852)
T TIGR03345 257 -----G--ASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL---------ARGELRTI 320 (852)
T ss_pred -----c--cccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh---------hCCCeEEE
Confidence 0 0001111222333333332 24679999999976521 11 1212211 22235566
Q ss_pred EEeCchhhh------hhhcCCcccEEcCCCChHHHHHHHHHHhCC---CCCCCchHHHHHHHHHHcCCC
Q 042728 300 LTSRKQDLL------RIDMNSQKNFQIDALPPKEALQLFEEIVGD---STKISAFQSTANEIVERCGGL 359 (486)
Q Consensus 300 vTtR~~~v~------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~---~~~~~~~~~~~~~i~~~~~Gl 359 (486)
-||...... .........+.+++++.++..+++...... ...-.-..+....+++.+.+.
T Consensus 321 gaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 321 AATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred EecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 666553221 112234568999999999999997544321 111112244556677766653
No 73
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=5.5e-06 Score=86.76 Aligned_cols=185 Identities=16% Similarity=0.186 Sum_probs=112.5
Q ss_pred cccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhH---------------------ccCCC
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALRDDKLN-IIGVHGMGGVGKTTIVKQVAKQVME---------------------ENLFD 210 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~---------------------~~~f~ 210 (486)
.+.....++|.+...+.|..++..+... .+.++|+.|+||||+|+.++....- ..+|+
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 3445678999999999999999877654 5789999999999999998887631 11233
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCccccc
Q 042728 211 KVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKD 288 (486)
Q Consensus 211 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~ 288 (486)
. ..+..+......++ +.++.++...+ . .+++-++|+|+++... ..+.+...+..
T Consensus 92 ~-~~ld~~~~~~vd~I-r~li~~~~~~P----------------~-~~~~KVvIIdea~~Ls~~a~naLLK~LEe----- 147 (614)
T PRK14971 92 I-HELDAASNNSVDDI-RNLIEQVRIPP----------------Q-IGKYKIYIIDEVHMLSQAAFNAFLKTLEE----- 147 (614)
T ss_pred e-EEecccccCCHHHH-HHHHHHHhhCc----------------c-cCCcEEEEEECcccCCHHHHHHHHHHHhC-----
Confidence 2 22222222222221 12222221110 0 1345688999998663 34444333322
Q ss_pred ccCCCCCcEEEE-EeCchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHH
Q 042728 289 RKDDQRRCTIIL-TSRKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALST 365 (486)
Q Consensus 289 ~~~~~~~s~ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 365 (486)
...++.+|+ |+....+..........+++.+++.++....+.+.+...... --.+.+..|++.++|..--+..
T Consensus 148 ---pp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~-i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 148 ---PPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT-AEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred ---CCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 333555555 444444443234556789999999999999998876533222 2234678899999997754433
No 74
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=3.9e-06 Score=87.39 Aligned_cols=201 Identities=16% Similarity=0.196 Sum_probs=110.7
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEE-eCCCCCHHHHHHH
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAE-VTQTPDHHKIQNK 229 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-vs~~~~~~~~~~~ 229 (486)
+++.....++|.+..+..|.+++..+.. +.+.++|+.|+||||+|+.+++...-....+.-.|.. +......-...+.
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~ 89 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRD 89 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHH
Confidence 3455677899999999999999977665 4588999999999999999998774321111001110 0000011111111
Q ss_pred HHHHhCCC-----CCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEE
Q 042728 230 LAFDLGME-----FGLNENEFQRAERLHERLK----KEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTI 298 (486)
Q Consensus 230 i~~~l~~~-----~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~i 298 (486)
+...-..+ .......++.. .+.+.+. .+++-++|+|+++... ..+.+...+.. ....+.+
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir-~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe--------Pp~~tv~ 160 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIR-QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE--------PPPHAIF 160 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC--------CCCCeEE
Confidence 11100000 00011122222 2223321 1345688999998653 23333322222 2234544
Q ss_pred E-EEeCchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHH
Q 042728 299 I-LTSRKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVA 362 (486)
Q Consensus 299 l-vTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPla 362 (486)
| +|++...+..........+++.+++.++....+.+.+...... -..+.+..|++.++|..--
T Consensus 161 IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~-I~~eal~~La~~s~Gdlr~ 224 (620)
T PRK14954 161 IFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ-IDADALQLIARKAQGSMRD 224 (620)
T ss_pred EEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHH
Confidence 4 4544444433234556789999999999988888766422211 1245678899999996553
No 75
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.48 E-value=2.4e-06 Score=84.65 Aligned_cols=178 Identities=16% Similarity=0.200 Sum_probs=102.0
Q ss_pred ccCccccccHHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC
Q 042728 154 VKDFEAFDSRMKVFQDVMEALRD-------------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT 220 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 220 (486)
......+.|+++.+++|.+.+.. ..++-+.|+|++|+|||++|+.+++..... | +.+..
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~--~-----~~v~~- 189 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--F-----IRVVG- 189 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC--E-----Eecch-
Confidence 34456789999999999887631 124568999999999999999999876422 2 22211
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc----------------cccccCCCCCc
Q 042728 221 PDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE----------------LDKFGIPTGDV 284 (486)
Q Consensus 221 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~----------------~~~l~~~~~~~ 284 (486)
..+.... ++ ........+.+......+.+|+||+++.... +..+...+..
T Consensus 190 ---~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~- 255 (364)
T TIGR01242 190 ---SELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG- 255 (364)
T ss_pred ---HHHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC-
Confidence 1111110 00 1112223333333334678999999975410 1111000000
Q ss_pred ccccccCCCCCcEEEEEeCchhhhhhh-c---CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCh
Q 042728 285 AEKDRKDDQRRCTIILTSRKQDLLRID-M---NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLP 360 (486)
Q Consensus 285 ~~~~~~~~~~~s~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 360 (486)
.....+..||.||......... . .-...+.++..+.++..++|+.++......+.. ....+++.+.|..
T Consensus 256 -----~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 256 -----FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred -----CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 0123467788888764322111 1 223578999999999999999887643322211 2456777777754
No 76
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.46 E-value=6.9e-07 Score=86.28 Aligned_cols=91 Identities=13% Similarity=0.126 Sum_probs=63.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCCCHHHH-------HH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP--DHHKIQNKLAFDLGMEFGLNENEFQR-------AE 249 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~-------~~ 249 (486)
-+...|+|++|+|||||++.+++..... +|+.++||.+.+.. .+.++++.+...+-.... ..+.... ..
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~-d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF-DEPAERHVQVAEMVIE 246 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC-CCCHHHHHHHHHHHHH
Confidence 3568899999999999999999998776 89999999999887 777788777632211111 1221111 12
Q ss_pred HHHHHHhcCCcEEEEEeCCCCc
Q 042728 250 RLHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 250 ~l~~~L~~~kr~LlVlDdv~~~ 271 (486)
........+++.+|++|++...
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHHH
Confidence 2222223468999999999754
No 77
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=5.6e-06 Score=86.78 Aligned_cols=193 Identities=16% Similarity=0.173 Sum_probs=108.9
Q ss_pred cccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHccCCC-e-EEEEE---eCCCCCHHHH
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEENLFD-K-VVMAE---VTQTPDHHKI 226 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~-~~wv~---vs~~~~~~~~ 226 (486)
+|.....++|.+..++.|..++..++. +.+.++|+.|+||||+|+.+++..-.....+ + .+-.| ....++..
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi-- 90 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII-- 90 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE--
Confidence 445567889999999999999977654 4568999999999999999987753221100 0 00000 00000000
Q ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCc--cccccccCCCCCcccccccCCCCCcE-EE
Q 042728 227 QNKLAFDLGMEFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTK--LELDKFGIPTGDVAEKDRKDDQRRCT-II 299 (486)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~-il 299 (486)
..........+ ....+.+.+. .+++-++|+|+++.. ..++.+...+.. ....+. |+
T Consensus 91 --------eidaasn~~vd-~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE--------PP~~tifIL 153 (725)
T PRK07133 91 --------EMDAASNNGVD-EIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE--------PPKHVIFIL 153 (725)
T ss_pred --------EEeccccCCHH-HHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc--------CCCceEEEE
Confidence 00000001111 1222333322 145569999999865 234433322222 223444 44
Q ss_pred EEeCchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHH
Q 042728 300 LTSRKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALST 365 (486)
Q Consensus 300 vTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 365 (486)
+|+....+.......+..+++.+++.++....+...+...... -..+.+..|++.++|.+.-+..
T Consensus 154 aTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~-id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 154 ATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS-YEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred EcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 5555554543234455789999999999999988765432211 1234577899999997653333
No 78
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=9.3e-06 Score=82.73 Aligned_cols=184 Identities=15% Similarity=0.152 Sum_probs=108.8
Q ss_pred cccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhHcc-------------------CCCeE
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALRDDKLN-IIGVHGMGGVGKTTIVKQVAKQVMEEN-------------------LFDKV 212 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~ 212 (486)
+|.....++|.+..+..|.+++..+..+ .+.++|+.|+||||+|+.++....... .+..+
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 4445677899999999999999776554 467899999999999999987753110 01112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccccCCCCCccc
Q 042728 213 VMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTKL--ELDKFGIPTGDVAE 286 (486)
Q Consensus 213 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~ 286 (486)
+++..+.... .+ ....+.+.+. .+++-++|+|+++... ..+.+...+..
T Consensus 91 ~eidaas~~g---------------------vd-~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe--- 145 (486)
T PRK14953 91 IEIDAASNRG---------------------ID-DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE--- 145 (486)
T ss_pred EEEeCccCCC---------------------HH-HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc---
Confidence 2222111111 11 1112222221 1356799999998652 23333222221
Q ss_pred ccccCCCCCcEEEE-EeCchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHH
Q 042728 287 KDRKDDQRRCTIIL-TSRKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALST 365 (486)
Q Consensus 287 ~~~~~~~~~s~ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 365 (486)
....+.+|+ ||+...+..........+.+.+++.++....+.+.+..... .-..+....|++.++|.+..+..
T Consensus 146 -----pp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi-~id~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 146 -----PPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI-EYEEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred -----CCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 223444444 44444333222344567999999999999988887653222 12235677899999997765544
Q ss_pred HH
Q 042728 366 VA 367 (486)
Q Consensus 366 ~~ 367 (486)
..
T Consensus 220 ~L 221 (486)
T PRK14953 220 LL 221 (486)
T ss_pred HH
Confidence 44
No 79
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=1.1e-05 Score=78.59 Aligned_cols=196 Identities=15% Similarity=0.150 Sum_probs=124.3
Q ss_pred CccccccHHHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042728 156 DFEAFDSRMKVFQDVMEALRD----DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLA 231 (486)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (486)
.+..+.||+.+++.+.+++.. ...+.+-|.|.+|.|||.+...++.+......--.+++++...-.....++..|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 356789999999999998843 4567788999999999999999998886543223567777776667778888887
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHhcCC-cEEEEEeCCCCcc-----ccccccCCCCCcccccccCCCCCcEEEEEe---
Q 042728 232 FDLGMEFGLNENEFQRAERLHERLKKEK-QLLIILDNIWTKL-----ELDKFGIPTGDVAEKDRKDDQRRCTIILTS--- 302 (486)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~L~~~k-r~LlVlDdv~~~~-----~~~~l~~~~~~~~~~~~~~~~~~s~ilvTt--- 302 (486)
..+-.....+....+....+.++..+.+ .+|+|+|.++... .+-.+ ..++ ...++++|+.-
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~l-Fewp---------~lp~sr~iLiGiAN 297 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTL-FEWP---------KLPNSRIILIGIAN 297 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeee-hhcc---------cCCcceeeeeeehh
Confidence 7762111112223556667777776544 7899999997542 11111 1111 23345554332
Q ss_pred ------Cchhhhhh-hcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChH
Q 042728 303 ------RKQDLLRI-DMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPV 361 (486)
Q Consensus 303 ------R~~~v~~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl 361 (486)
|.-.-... ..-....+..+|-+.++-.++|..++........+...++-+++||.|.--
T Consensus 298 slDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG 363 (529)
T KOG2227|consen 298 SLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG 363 (529)
T ss_pred hhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch
Confidence 22211111 112335688899999999999999887544444444444555555555433
No 80
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.45 E-value=3.6e-06 Score=83.80 Aligned_cols=179 Identities=16% Similarity=0.184 Sum_probs=100.1
Q ss_pred cCccccccHHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC
Q 042728 155 KDFEAFDSRMKVFQDVMEALRD-------------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP 221 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 221 (486)
...+.+.|+++.+++|.+.+.. ..++-|.++|++|+|||++|+.+++..... |+.++.
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~-- 198 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG-- 198 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh--
Confidence 3456788999999998887621 235668999999999999999999876421 222211
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc------------c-ccccCCCCCccccc
Q 042728 222 DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE------------L-DKFGIPTGDVAEKD 288 (486)
Q Consensus 222 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~------------~-~~l~~~~~~~~~~~ 288 (486)
.++.. .. ..........+.+......+.+|+||+++.... . ..+...+.. ..
T Consensus 199 --~~l~~----~~------~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~---ld 263 (389)
T PRK03992 199 --SELVQ----KF------IGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAE---MD 263 (389)
T ss_pred --HHHhH----hh------ccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHh---cc
Confidence 11111 10 001122233344443334678999999975410 0 001000000 00
Q ss_pred ccCCCCCcEEEEEeCchhhhhhhc----CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCC
Q 042728 289 RKDDQRRCTIILTSRKQDLLRIDM----NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGL 359 (486)
Q Consensus 289 ~~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl 359 (486)
......+..||.||.......... .-...+.+++.+.++-.++|+.++........ .....+++.+.|.
T Consensus 264 ~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~--~~~~~la~~t~g~ 336 (389)
T PRK03992 264 GFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD--VDLEELAELTEGA 336 (389)
T ss_pred ccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc--CCHHHHHHHcCCC
Confidence 001234567787776654322111 12356999999999999999988764322221 1235566777664
No 81
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=8.1e-06 Score=85.61 Aligned_cols=201 Identities=12% Similarity=0.128 Sum_probs=114.8
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
+.+.....++|.+..++.|..++..+.. +.+.++|+.|+||||+|+.+++......... -....+.-...+.|
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i 83 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAI 83 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHH
Confidence 3445567899999999999999877654 4568999999999999999998764211100 00011111222233
Q ss_pred HHHhCCC-----CCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEE
Q 042728 231 AFDLGME-----FGLNENEFQRAERLHERLK----KEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTII 299 (486)
Q Consensus 231 ~~~l~~~-----~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~il 299 (486)
....+.+ .......++ ...+.+.+. ..++-++|+|+++... ..+.+...+.. ....+.+|
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe--------pp~~tv~I 154 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE--------PPPHAIFI 154 (585)
T ss_pred hcCCCCeEEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc--------CCCCeEEE
Confidence 2221111 000111222 222222222 1345789999997552 34444322222 33355566
Q ss_pred EEeCc-hhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHH
Q 042728 300 LTSRK-QDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVAN 368 (486)
Q Consensus 300 vTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~ 368 (486)
+++.+ ..+..........+.+.+++.++....+...+...... -..+.+..|++.++|.+..+.....
T Consensus 155 l~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 155 LATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-LEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred EEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 55543 33332223445678999999999999888876532221 1235678899999998865544433
No 82
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.43 E-value=4e-06 Score=84.75 Aligned_cols=169 Identities=15% Similarity=0.118 Sum_probs=105.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEK 259 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (486)
.-+.|+|..|+|||+|++.+++.......-..+++++ ..++...+...++.. ......+.+.+. +
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~-------~~~~~~~~~~~~--~ 206 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKT-------HKEIEQFKNEIC--Q 206 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHh-------hhHHHHHHHHhc--c
Confidence 4588999999999999999998776543233455554 345666666655421 012333444444 3
Q ss_pred cEEEEEeCCCCcc---cc-ccccCCCCCcccccccCCCCCcEEEEEeCchhhhh--------hhcCCcccEEcCCCChHH
Q 042728 260 QLLIILDNIWTKL---EL-DKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLLR--------IDMNSQKNFQIDALPPKE 327 (486)
Q Consensus 260 r~LlVlDdv~~~~---~~-~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~--------~~~~~~~~~~l~~L~~~e 327 (486)
.-+||+||+.... .+ +.+...+.. ....|..||+|+...+... ..+...-.+.+++++.++
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~-------~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~ 279 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNN-------FIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKT 279 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHH-------HHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHH
Confidence 4589999997542 11 122111111 1233456888876543211 122344678899999999
Q ss_pred HHHHHHHHhCCCCC-CCchHHHHHHHHHHcCCChHHHHHHHHHh
Q 042728 328 ALQLFEEIVGDSTK-ISAFQSTANEIVERCGGLPVALSTVANAL 370 (486)
Q Consensus 328 ~~~Lf~~~~~~~~~-~~~~~~~~~~i~~~~~GlPlai~~~~~~L 370 (486)
-.+++.+.+..... ..-.+++...|++.++|.|-.+.-+...+
T Consensus 280 r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 280 ATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 99999998864221 13346788999999999998777665444
No 83
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.42 E-value=5.1e-06 Score=89.62 Aligned_cols=160 Identities=15% Similarity=0.199 Sum_probs=94.9
Q ss_pred CccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCC----CeEEEEEeCCCCCHHHHHHHHH
Q 042728 156 DFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLF----DKVVMAEVTQTPDHHKIQNKLA 231 (486)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~vs~~~~~~~~~~~i~ 231 (486)
..++++||++++.++++.|......-+.++|++|+|||++|+.+++........ +..+|. + +...+.
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~---- 250 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLL---- 250 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHh----
Confidence 356899999999999999977766678899999999999999999887543211 233332 1 111111
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc----------cccccCCCCCcccccccCCCCCcEEEEE
Q 042728 232 FDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE----------LDKFGIPTGDVAEKDRKDDQRRCTIILT 301 (486)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~----------~~~l~~~~~~~~~~~~~~~~~~s~ilvT 301 (486)
... ......+.....+.+.+...++.+|++|+++.... ...+..+.- .....++|-+
T Consensus 251 a~~----~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---------~~g~i~~Iga 317 (731)
T TIGR02639 251 AGT----KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---------SSGKLRCIGS 317 (731)
T ss_pred hhc----cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---------hCCCeEEEEe
Confidence 100 00122334444555555444679999999974421 111111110 1122345555
Q ss_pred eCchhhh------hhhcCCcccEEcCCCChHHHHHHHHHHhC
Q 042728 302 SRKQDLL------RIDMNSQKNFQIDALPPKEALQLFEEIVG 337 (486)
Q Consensus 302 tR~~~v~------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 337 (486)
|...+.. .........+.+++++.++..+++.....
T Consensus 318 Tt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred cCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHH
Confidence 5442211 11123346799999999999999986543
No 84
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=7.7e-06 Score=82.75 Aligned_cols=186 Identities=14% Similarity=0.155 Sum_probs=108.4
Q ss_pred cccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHcc---------------------CCC
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEEN---------------------LFD 210 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------------------~f~ 210 (486)
.+.....++|.+..+..|.+++..+.. +.+.++|+.|+||||+|+.+++...... +++
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 445577899999999999999977665 5678999999999999999988764321 111
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCccccc
Q 042728 211 KVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKD 288 (486)
Q Consensus 211 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~ 288 (486)
.+++.-.......+ .+.+.+.+. ..-...++-++|+|+++... ..+.+...+..
T Consensus 92 -~~~i~g~~~~gid~-ir~i~~~l~-----------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe----- 147 (451)
T PRK06305 92 -VLEIDGASHRGIED-IRQINETVL-----------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE----- 147 (451)
T ss_pred -eEEeeccccCCHHH-HHHHHHHHH-----------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc-----
Confidence 11111111111111 111111111 00001356788999987552 23333222222
Q ss_pred ccCCCCCcEEEEEeC-chhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChH-HHHHH
Q 042728 289 RKDDQRRCTIILTSR-KQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPV-ALSTV 366 (486)
Q Consensus 289 ~~~~~~~s~ilvTtR-~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~ 366 (486)
...++.+|++|. ...+..........+++.+++.++....+.+.+..... .-..+.+..|++.++|.+- ++..+
T Consensus 148 ---p~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~-~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 148 ---PPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI-ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred ---CCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 333555666553 33332222344568999999999999988876643221 1224567889999999764 44443
No 85
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.41 E-value=1e-05 Score=73.86 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=95.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKE 258 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 258 (486)
...+.|+|+.|+|||.|.+.+++.......-..++|++ ..++...+...+... ....+.+.+..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~---------~~~~~~~~~~~- 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG---------EIEEFKDRLRS- 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT---------SHHHHHHHHCT-
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc---------cchhhhhhhhc-
Confidence 34689999999999999999999987653333566764 445555555554321 12345555553
Q ss_pred CcEEEEEeCCCCccc---ccc-ccCCCCCcccccccCCCCCcEEEEEeCchhhhh--------hhcCCcccEEcCCCChH
Q 042728 259 KQLLIILDNIWTKLE---LDK-FGIPTGDVAEKDRKDDQRRCTIILTSRKQDLLR--------IDMNSQKNFQIDALPPK 326 (486)
Q Consensus 259 kr~LlVlDdv~~~~~---~~~-l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~--------~~~~~~~~~~l~~L~~~ 326 (486)
-=+|++||++.... |.. +...+.. ....|.+||+|+...+..- ..+.....+++++++.+
T Consensus 98 -~DlL~iDDi~~l~~~~~~q~~lf~l~n~-------~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~ 169 (219)
T PF00308_consen 98 -ADLLIIDDIQFLAGKQRTQEELFHLFNR-------LIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDE 169 (219)
T ss_dssp -SSEEEEETGGGGTTHHHHHHHHHHHHHH-------HHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HH
T ss_pred -CCEEEEecchhhcCchHHHHHHHHHHHH-------HHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHH
Confidence 45899999976521 221 1111110 1234678999997654211 12344567999999999
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 327 EALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 327 e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
+-.+++.+.+...... -.+++.+-|++.+.+..-.+..+
T Consensus 170 ~r~~il~~~a~~~~~~-l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 170 DRRRILQKKAKERGIE-LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHHHHHHTT---S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CcHHHHHHHHHhhcCCHHHHHHH
Confidence 9999999888632221 23457777777776655444433
No 86
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=1.6e-05 Score=82.71 Aligned_cols=197 Identities=15% Similarity=0.151 Sum_probs=110.0
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
+.|.....++|.+...+.|.+++..+.. +.+.++|+.|+||||+|+.+++........+. .+.+.-.....|
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C~~i 82 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEICKAI 82 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHHHHH
Confidence 3455677899999999999999977654 45678999999999999999877532211000 000100111111
Q ss_pred HHHhCCC-----CCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCc--cccccccCCCCCcccccccCCCCCcEEE
Q 042728 231 AFDLGME-----FGLNENEFQRAERLHERLK----KEKQLLIILDNIWTK--LELDKFGIPTGDVAEKDRKDDQRRCTII 299 (486)
Q Consensus 231 ~~~l~~~-----~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~il 299 (486)
......+ .......+ ....+.+... .+++-++|+|+++.. ..++.+...+.. ...++.+|
T Consensus 83 ~~g~~~dv~eidaas~~~vd-~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe--------pp~~~ifI 153 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGVD-EIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE--------PPAHVIFI 153 (559)
T ss_pred hcCCCCCeEEeeccccCCHH-HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC--------CCCCeEEE
Confidence 1110000 00011111 1222222221 245668899999865 234444322222 22344444
Q ss_pred E-EeCchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHH
Q 042728 300 L-TSRKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALST 365 (486)
Q Consensus 300 v-TtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 365 (486)
+ ||....+.....+....+.+.+++.++....+...+....... -.+....|++.++|.+..+..
T Consensus 154 latt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i-~~~al~~ia~~s~G~~R~al~ 219 (559)
T PRK05563 154 LATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEY-EDEALRLIARAAEGGMRDALS 219 (559)
T ss_pred EEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 4 4444444332334556789999999999999888765322211 235677888899887764433
No 87
>PRK05642 DNA replication initiation factor; Validated
Probab=98.38 E-value=1.1e-05 Score=74.48 Aligned_cols=151 Identities=14% Similarity=0.176 Sum_probs=90.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEK 259 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (486)
..+.|+|.+|+|||.|++.+++....+ -..++|++... +... ...+.+.+.+ -
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~------------------~~~~~~~~~~-~ 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR------------------GPELLDNLEQ-Y 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh------------------hHHHHHhhhh-C
Confidence 568899999999999999998877544 24567776432 1110 0123334432 1
Q ss_pred cEEEEEeCCCCc---ccccc-ccCCCCCcccccccCCCCCcEEEEEeCchhhhhh--------hcCCcccEEcCCCChHH
Q 042728 260 QLLIILDNIWTK---LELDK-FGIPTGDVAEKDRKDDQRRCTIILTSRKQDLLRI--------DMNSQKNFQIDALPPKE 327 (486)
Q Consensus 260 r~LlVlDdv~~~---~~~~~-l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~--------~~~~~~~~~l~~L~~~e 327 (486)
=+|++||+... ..|.. +...+.. ....|..+|+|++..+-.-. .+.....+++++++.++
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~-------~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~ 170 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNR-------LRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDED 170 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHH-------HHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHH
Confidence 27889999743 23332 2111111 02346678888876542110 12234678999999999
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 328 ALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 328 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
-..+++.++.... -.-.+++..-|++.+.|..-.+..+
T Consensus 171 ~~~il~~ka~~~~-~~l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 171 KLRALQLRASRRG-LHLTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 9999996654321 1122467788888887765544433
No 88
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=1.8e-05 Score=82.00 Aligned_cols=198 Identities=13% Similarity=0.143 Sum_probs=112.0
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
..|.....++|.+..+..|..++..+.. +.+.++|+.|+||||+|+.+++.......... ..+....+ .+.|
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~----C~~i 82 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSS----CKSI 82 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchH----HHHH
Confidence 3445567899999999999999977655 45789999999999999999987643211100 00000000 0111
Q ss_pred HHHhCC-----CCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEE
Q 042728 231 AFDLGM-----EFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTII 299 (486)
Q Consensus 231 ~~~l~~-----~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~il 299 (486)
...-.. ........++.. .+.+.+. .+++-++|+|+++... .++.+...+.. ....+.+|
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe--------pp~~~vfI 153 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE--------PPPYIVFI 153 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc--------CCCCEEEE
Confidence 000000 000011122221 2221111 1355689999998663 34444333332 33455565
Q ss_pred EEeC-chhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 300 LTSR-KQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 300 vTtR-~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
++|. ...+..........+++.+++.++....+.+.+..... .--.+.+..|++.++|.+..+..+
T Consensus 154 ~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi-~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 154 FATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI-KYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred EecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 5553 33333222344567999999999999988887643221 222456778999999988644443
No 89
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.37 E-value=4.9e-06 Score=80.89 Aligned_cols=151 Identities=11% Similarity=0.141 Sum_probs=87.7
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
..|.....++|.+...+.+..++..+.. +++.++|++|+||||+|+.+++.... .+..++.+. .... ..+..
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~-~i~~~ 87 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRID-FVRNR 87 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHH-HHHHH
Confidence 3445567889999999999999977654 56666999999999999999887521 233444443 1211 11111
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEEEeCCCCcc--cc-ccccCCCCCcccccccCCCCCcEEEEEeCchh
Q 042728 231 AFDLGMEFGLNENEFQRAERLHERLK-KEKQLLIILDNIWTKL--EL-DKFGIPTGDVAEKDRKDDQRRCTIILTSRKQD 306 (486)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~L~-~~kr~LlVlDdv~~~~--~~-~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 306 (486)
+..+ ..... .+.+-++|+|+++... .. ..+...+.. ...++++|+||....
T Consensus 88 l~~~-----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~--------~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 88 LTRF-----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEA--------YSKNCSFIITANNKN 142 (316)
T ss_pred HHHH-----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHh--------cCCCceEEEEcCChh
Confidence 1110 00000 0235688999997551 11 112111111 345678888886543
Q ss_pred h-hhhhcCCcccEEcCCCChHHHHHHHHH
Q 042728 307 L-LRIDMNSQKNFQIDALPPKEALQLFEE 334 (486)
Q Consensus 307 v-~~~~~~~~~~~~l~~L~~~e~~~Lf~~ 334 (486)
. .....+....+.++..+.++..+++..
T Consensus 143 ~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 143 GIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 2 111223345678888888887766554
No 90
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.37 E-value=4.8e-06 Score=90.88 Aligned_cols=157 Identities=16% Similarity=0.264 Sum_probs=94.1
Q ss_pred ccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCC----CeEEEEEeCCCCCHHHHHHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLF----DKVVMAEVTQTPDHHKIQNKLAF 232 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~vs~~~~~~~~~~~i~~ 232 (486)
..+++||+++++++++.|.....+-+.++|++|+|||++|..++......... +..+|. + +...++ .
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c
Confidence 46789999999999999977666677899999999999999999887532111 233442 1 111111 1
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc---------cccccCCCCCcccccccCCCCCcEEEEEeC
Q 042728 233 DLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE---------LDKFGIPTGDVAEKDRKDDQRRCTIILTSR 303 (486)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~---------~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 303 (486)
+... ....++....+.+.+...++.+|++|+++.... ...+..|.- .....++|.+|.
T Consensus 249 --g~~~--~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l---------~rg~l~~IgaTt 315 (821)
T CHL00095 249 --GTKY--RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL---------ARGELQCIGATT 315 (821)
T ss_pred --cCCC--ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHH---------hCCCcEEEEeCC
Confidence 1111 122334445555555545679999999974311 111111110 122345666665
Q ss_pred chhhhh------hhcCCcccEEcCCCChHHHHHHHHHH
Q 042728 304 KQDLLR------IDMNSQKNFQIDALPPKEALQLFEEI 335 (486)
Q Consensus 304 ~~~v~~------~~~~~~~~~~l~~L~~~e~~~Lf~~~ 335 (486)
..+... ........+.++..+.++...++...
T Consensus 316 ~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 316 LDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 554311 11234467889999999998887653
No 91
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.9e-05 Score=82.85 Aligned_cols=201 Identities=14% Similarity=0.166 Sum_probs=112.4
Q ss_pred cccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLA 231 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (486)
.+.....++|.+.....|..++..+.. +.+.++|+.|+||||+|+.+++.......... . ......-...+.+.
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-T----PEPCGKCELCRAIA 85 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-C----CCCCcccHHHHHHh
Confidence 344567789999999999999977654 67889999999999999999988743211100 0 00111112222222
Q ss_pred HHhCCC-----CCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEE
Q 042728 232 FDLGME-----FGLNENEFQRAERLHERLK----KEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIIL 300 (486)
Q Consensus 232 ~~l~~~-----~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilv 300 (486)
.....+ .......+ .+..+.+.+. .+++-++|+|+++... ..+.+...+.. ....+.+|+
T Consensus 86 ~g~h~D~~ei~~~~~~~vd-~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe--------Pp~~tvfIL 156 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVD-NIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE--------PPPRVVFVL 156 (620)
T ss_pred cCCCccEEEEeccccCCHH-HHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc--------CCcCeEEEE
Confidence 111110 00011111 2222222222 1345688999998652 34444332222 233454554
Q ss_pred EeC-chhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHH
Q 042728 301 TSR-KQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVAN 368 (486)
Q Consensus 301 TtR-~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~ 368 (486)
+|. ...+..........+++.+++.++....+...+...... --.+.+..|++.++|.+..+..+..
T Consensus 157 ~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~-is~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 157 ATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE-IEPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred EeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 443 333332233455778999999999888887766532211 1134678899999998865544433
No 92
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=8.7e-06 Score=84.98 Aligned_cols=201 Identities=13% Similarity=0.175 Sum_probs=111.3
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
+.+.....++|.+...+.|.+++..+.. +.+.++|+.|+||||+|+.+++........+. .....-.....|
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i 82 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEI 82 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHH
Confidence 3455677899999999999999987765 45689999999999999999887642211100 000000000111
Q ss_pred HHHhCC-----CCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEE
Q 042728 231 AFDLGM-----EFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTII 299 (486)
Q Consensus 231 ~~~l~~-----~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~il 299 (486)
...-.. ........++ +..+.+.+. ..++-++|+|+++... ..+.+...+.. ...++.+|
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe--------pp~~~~fI 153 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE--------PPPHVKFI 153 (576)
T ss_pred hcCCCCCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc--------CCCCeEEE
Confidence 000000 0000011111 222222222 1345588999998653 23333222222 23355555
Q ss_pred E-EeCchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCh-HHHHHHHHH
Q 042728 300 L-TSRKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLP-VALSTVANA 369 (486)
Q Consensus 300 v-TtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP-lai~~~~~~ 369 (486)
+ ||....+.....+....+++.+++.++....+...+...... --.+....|++.++|.. .++..+-.+
T Consensus 154 l~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~-i~~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 154 FATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS-ISDAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred EEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4 554454543234456789999999999988888766532221 12356778899999966 455544333
No 93
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.35 E-value=8.4e-06 Score=74.35 Aligned_cols=188 Identities=17% Similarity=0.157 Sum_probs=111.0
Q ss_pred ccCccccccHHHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHH
Q 042728 154 VKDFEAFDSRMKVFQDVMEALR-----DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQN 228 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 228 (486)
+.....|+|.++..++|.=++. +..+--+.++|++|.||||||..+++...+. +. ..+.+..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~k------~tsGp~l----- 88 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--LK------ITSGPAL----- 88 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--eE------ecccccc-----
Confidence 4456789999998888766653 3456678999999999999999999998764 11 1111111
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc-ccccc-cCCCCCcccccccCCCCCcE---------
Q 042728 229 KLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL-ELDKF-GIPTGDVAEKDRKDDQRRCT--------- 297 (486)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~-~~~~l-~~~~~~~~~~~~~~~~~~s~--------- 297 (486)
.-..+++. +...|+ ..=+|++|.++... ..+++ .....+|..-.....++++|
T Consensus 89 -------------eK~gDlaa-iLt~Le--~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 89 -------------EKPGDLAA-ILTNLE--EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred -------------cChhhHHH-HHhcCC--cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 11112222 222233 33577788887542 11111 11122222222222333333
Q ss_pred --EEEEeCchhhhhhhc-CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhc
Q 042728 298 --IILTSRKQDLLRIDM-NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANALK 371 (486)
Q Consensus 298 --ilvTtR~~~v~~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~ 371 (486)
|=.|||...+..-.. .-.-..+++--+.+|-.+++.+.+.--. ..-.++.+.+|++...|-|--..-+.+..+
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~-i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG-IEIDEEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC-CCCChHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 346888776532111 1224678899999999999998775211 122245688999999999986666655544
No 94
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.34 E-value=4e-06 Score=78.94 Aligned_cols=154 Identities=16% Similarity=0.220 Sum_probs=79.3
Q ss_pred ccccHHHHHHHHHHH---hc------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCH
Q 042728 159 AFDSRMKVFQDVMEA---LR------------DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDH 223 (486)
Q Consensus 159 ~~~gR~~~~~~l~~~---L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~ 223 (486)
.++|.+...+.|.+. +. .+....+.++|++|+||||+|+.+++.....+......++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 477877766655433 21 123456789999999999999999987643221111122332221
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc----------ccccccCCCCCcccccccCCC
Q 042728 224 HKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL----------ELDKFGIPTGDVAEKDRKDDQ 293 (486)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~~~~~~~~ 293 (486)
++.... . ... . ..+.+.+.....-+|++|+++... ..+.+...... ..
T Consensus 84 -~l~~~~---~------g~~-~---~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~--------~~ 141 (261)
T TIGR02881 84 -DLVGEY---I------GHT-A---QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMED--------NR 141 (261)
T ss_pred -Hhhhhh---c------cch-H---HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhc--------cC
Confidence 111110 0 011 1 112222222123588999998532 11222111111 22
Q ss_pred CCcEEEEEeCchhhhh------hhcCC-cccEEcCCCChHHHHHHHHHHhC
Q 042728 294 RRCTIILTSRKQDLLR------IDMNS-QKNFQIDALPPKEALQLFEEIVG 337 (486)
Q Consensus 294 ~~s~ilvTtR~~~v~~------~~~~~-~~~~~l~~L~~~e~~~Lf~~~~~ 337 (486)
....+++++....... ..... ...+.+++++.++..+++.+.+.
T Consensus 142 ~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 142 NEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 3345555554432210 01112 24689999999999999988775
No 95
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.33 E-value=1.4e-06 Score=84.60 Aligned_cols=93 Identities=13% Similarity=0.120 Sum_probs=64.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC--CCHHHHHHHHHHHhCCCCC-C-CCCHH----HHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT--PDHHKIQNKLAFDLGMEFG-L-NENEF----QRAE 249 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~-~-~~~~~----~~~~ 249 (486)
.-..+.|+|++|+|||||++.+++..... +|+..+|+.+.+. .++.++++.+...+-...- . +.... ....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 34678999999999999999999988665 8999999999866 6889999988543311111 0 11111 1122
Q ss_pred HHHHHHhcCCcEEEEEeCCCCc
Q 042728 250 RLHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 250 ~l~~~L~~~kr~LlVlDdv~~~ 271 (486)
........+++.+|++|++...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 2333334578999999999754
No 96
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.32 E-value=2e-05 Score=74.76 Aligned_cols=204 Identities=12% Similarity=0.097 Sum_probs=119.8
Q ss_pred ccccccHHHHHHHHHHHhccCC---ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALRDDK---LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFD 233 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~~~---~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 233 (486)
.+.+.+|+.++..|...+.+.. +..|.|.|.+|.|||.+++++++.... ..+|+++-..++...++..|+.+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHH
Confidence 3467899999999999985542 345689999999999999999988732 35899999999999999999999
Q ss_pred hCCCCCCCCCH---HHHHHHHHHHHh------c-CCcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeC
Q 042728 234 LGMEFGLNENE---FQRAERLHERLK------K-EKQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSR 303 (486)
Q Consensus 234 l~~~~~~~~~~---~~~~~~l~~~L~------~-~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 303 (486)
.+.....+... .+........+. + ++.++||||+++...+.+.... +.++..-...+.+.. +|+++-
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll--~~l~~L~el~~~~~i-~iils~ 156 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILL--QCLFRLYELLNEPTI-VIILSA 156 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHH--HHHHHHHHHhCCCce-EEEEec
Confidence 86322211111 122222222222 1 4579999999987655443311 111111111122333 344443
Q ss_pred chh--hhhhhcCCc--ccEEcCCCChHHHHHHHHHHhCCCCC----CCchHHHHHHHHHHcCCChHHHHHHHHH
Q 042728 304 KQD--LLRIDMNSQ--KNFQIDALPPKEALQLFEEIVGDSTK----ISAFQSTANEIVERCGGLPVALSTVANA 369 (486)
Q Consensus 304 ~~~--v~~~~~~~~--~~~~l~~L~~~e~~~Lf~~~~~~~~~----~~~~~~~~~~i~~~~~GlPlai~~~~~~ 369 (486)
..- .-...+++. .++..+.-+.+|...++.+.-.+... ..-+.-+..-....|+ -+-.+..+...
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~ 229 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISL 229 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHH
Confidence 221 111113433 35677889999999998763321111 0111223445566777 55555555444
No 97
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=8.8e-05 Score=71.39 Aligned_cols=197 Identities=12% Similarity=0.136 Sum_probs=112.9
Q ss_pred cccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHc--------------cCCCeEEEEEeCCCCC
Q 042728 158 EAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEE--------------NLFDKVVMAEVTQTPD 222 (486)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------~~f~~~~wv~vs~~~~ 222 (486)
..++|.+...+.|...+.+++. +...++|+.|+||+++|..+++..-.. .|.| ..|+.-.....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEecccccc
Confidence 4689999999999999987764 789999999999999999998776432 1222 23332110000
Q ss_pred HHHHHHHHHHHhCCCC-CCCCCHHHHHHHHHHHHhc----CCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCC
Q 042728 223 HHKIQNKLAFDLGMEF-GLNENEFQRAERLHERLKK----EKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRR 295 (486)
Q Consensus 223 ~~~~~~~i~~~l~~~~-~~~~~~~~~~~~l~~~L~~----~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~ 295 (486)
-..+-..-+...+... ..+.-..+....+.+.+.. +++-++|+|+++... ..+.+...+.. ..+.
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE--------Pp~~ 154 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE--------PGNG 154 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC--------CCCC
Confidence 0000001111111000 0011112233445555542 456789999997652 23333322322 2223
Q ss_pred cEEEEEeCchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042728 296 CTIILTSRKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVA 367 (486)
Q Consensus 296 s~ilvTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 367 (486)
.-|++|+....+.....+....+++.+++.++..+.+.+....... ......++..++|.|..+..+.
T Consensus 155 ~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~----~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 155 TLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL----NINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred eEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc----hhHHHHHHHHcCCCHHHHHHHH
Confidence 3344444444444434566788999999999999999986432111 1123578999999997665443
No 98
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.29 E-value=4.2e-06 Score=82.72 Aligned_cols=110 Identities=18% Similarity=0.220 Sum_probs=73.6
Q ss_pred ccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 042728 157 FEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGM 236 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 236 (486)
...+++.+..++.+...|... +.+.++|++|+|||++|+.+++.......|+.+.||.+++..+..++...+.-. +.
T Consensus 174 l~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~v 250 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GV 250 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CC
Confidence 345777888999999988754 457889999999999999999988766678899999999988877665422100 00
Q ss_pred CCCCCCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCc
Q 042728 237 EFGLNENEFQRAERLHERLKK-EKQLLIILDNIWTK 271 (486)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~L~~-~kr~LlVlDdv~~~ 271 (486)
.. ..........+...... +++++||+|++...
T Consensus 251 gy--~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 251 GF--RRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred Ce--EecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 00 00001111222222221 46799999999754
No 99
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.26 E-value=1.9e-05 Score=80.12 Aligned_cols=165 Identities=14% Similarity=0.208 Sum_probs=92.5
Q ss_pred ccCccccccHHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhHcc---CCCeEEEEEe
Q 042728 154 VKDFEAFDSRMKVFQDVMEALRD-------------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEEN---LFDKVVMAEV 217 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f~~~~wv~v 217 (486)
......+.|.+..+++|.+.+.- ..++-+.++|++|+|||++|+.+++...... ......|+++
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v 257 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNI 257 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEec
Confidence 33456678899999888887531 1345688999999999999999999875331 1123445544
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCHHHHH----HHHHHHHhcCCcEEEEEeCCCCccc---------c-----ccccC
Q 042728 218 TQTPDHHKIQNKLAFDLGMEFGLNENEFQRA----ERLHERLKKEKQLLIILDNIWTKLE---------L-----DKFGI 279 (486)
Q Consensus 218 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~----~~l~~~L~~~kr~LlVlDdv~~~~~---------~-----~~l~~ 279 (486)
.... ++. .. ........ ....+....+++++|+||+++.... . ..+..
T Consensus 258 ~~~e----Ll~----ky------vGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~ 323 (512)
T TIGR03689 258 KGPE----LLN----KY------VGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLS 323 (512)
T ss_pred cchh----hcc----cc------cchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHH
Confidence 3321 110 00 00011111 2222222234789999999985410 0 11111
Q ss_pred CCCCcccccccCCCCCcEEEEEeCchhhhhhh-c---CCcccEEcCCCChHHHHHHHHHHhCC
Q 042728 280 PTGDVAEKDRKDDQRRCTIILTSRKQDLLRID-M---NSQKNFQIDALPPKEALQLFEEIVGD 338 (486)
Q Consensus 280 ~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~ 338 (486)
.+.. .....+..||.||......... . .-...|.++..+.++..++|+.++..
T Consensus 324 ~LDg------l~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 324 ELDG------VESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred Hhcc------cccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 1110 0122345566666554432111 1 22346899999999999999998753
No 100
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.22 E-value=2.2e-05 Score=74.65 Aligned_cols=132 Identities=13% Similarity=0.146 Sum_probs=71.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCc
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQ 260 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr 260 (486)
-+.++|++|+|||++|+.+++.....+.....-++.++. .++. ..+.. .+.. ....+.+.. ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~----~~~~g-----~~~~-~~~~~~~~a---~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLV----GQYIG-----HTAP-KTKEILKRA---MG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHh----Hhhcc-----cchH-HHHHHHHHc---cC
Confidence 578999999999999999887775433222222444432 1222 22111 1111 112222222 23
Q ss_pred EEEEEeCCCCcc------c-----cccccCCCCCcccccccCCCCCcEEEEEeCchhhhhhh-------cCCcccEEcCC
Q 042728 261 LLIILDNIWTKL------E-----LDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLLRID-------MNSQKNFQIDA 322 (486)
Q Consensus 261 ~LlVlDdv~~~~------~-----~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~-------~~~~~~~~l~~ 322 (486)
-+|+||++.... . ++.+...+. ....+.+||+++......... ......+.+++
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le--------~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~ 194 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVME--------NQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPD 194 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHh--------cCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCC
Confidence 689999997431 1 112211111 134466677776544221100 01135699999
Q ss_pred CChHHHHHHHHHHhC
Q 042728 323 LPPKEALQLFEEIVG 337 (486)
Q Consensus 323 L~~~e~~~Lf~~~~~ 337 (486)
++.+|..+++...+.
T Consensus 195 l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 195 YSEAELLVIAGLMLK 209 (284)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999988764
No 101
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.18 E-value=4e-05 Score=84.07 Aligned_cols=158 Identities=14% Similarity=0.225 Sum_probs=92.7
Q ss_pred CccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCC----CeEEE-EEeCCCCCHHHHHHHH
Q 042728 156 DFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLF----DKVVM-AEVTQTPDHHKIQNKL 230 (486)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~w-v~vs~~~~~~~~~~~i 230 (486)
..++++||+.++.++++.|.......+.++|++|+|||++|..+++.......+ ...+| +++ ..+
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~------~~l---- 240 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM------GAL---- 240 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH------HHH----
Confidence 356799999999999999977666677899999999999999999886432111 12222 221 111
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEEEeCCCCccc---------cccccCCCCCcccccccCCCCCcEEEE
Q 042728 231 AFDLGMEFGLNENEFQRAERLHERLK-KEKQLLIILDNIWTKLE---------LDKFGIPTGDVAEKDRKDDQRRCTIIL 300 (486)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~L~-~~kr~LlVlDdv~~~~~---------~~~l~~~~~~~~~~~~~~~~~~s~ilv 300 (486)
+. +... ....+.....+.+.+. .+++.+|++|+++.... ...+..+.- ....-++|.
T Consensus 241 ~a--~~~~--~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---------~~g~i~~Ig 307 (852)
T TIGR03346 241 IA--GAKY--RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---------ARGELHCIG 307 (852)
T ss_pred hh--cchh--hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---------hcCceEEEE
Confidence 10 0000 1122333444444443 24679999999985421 111111211 222344555
Q ss_pred EeCchhhhh------hhcCCcccEEcCCCChHHHHHHHHHHh
Q 042728 301 TSRKQDLLR------IDMNSQKNFQIDALPPKEALQLFEEIV 336 (486)
Q Consensus 301 TtR~~~v~~------~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 336 (486)
+|...+.-. ........+.++..+.++...++....
T Consensus 308 aTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred eCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 555443211 112344568899999999999987654
No 102
>CHL00181 cbbX CbbX; Provisional
Probab=98.17 E-value=7.8e-05 Score=70.88 Aligned_cols=133 Identities=14% Similarity=0.229 Sum_probs=71.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEK 259 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (486)
..+.++|++|+||||+|+.+++.....+.-...-|+.++ ..++..... +. +.. ....+.+.. .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~l~~~~~---g~------~~~-~~~~~l~~a---~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDDLVGQYI---GH------TAP-KTKEVLKKA---M 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHHHHHHHh---cc------chH-HHHHHHHHc---c
Confidence 347899999999999999999876543222111244443 112222111 10 111 112222222 2
Q ss_pred cEEEEEeCCCCcc-----------ccccccCCCCCcccccccCCCCCcEEEEEeCchhhhh-------hhcCCcccEEcC
Q 042728 260 QLLIILDNIWTKL-----------ELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLLR-------IDMNSQKNFQID 321 (486)
Q Consensus 260 r~LlVlDdv~~~~-----------~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~-------~~~~~~~~~~l~ 321 (486)
.-+|++|++.... ....+..... ....+.+||+++....... ........+.++
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me--------~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~ 194 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVME--------NQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFP 194 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHh--------cCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcC
Confidence 3599999997531 1111111111 1344567777776443321 011233579999
Q ss_pred CCChHHHHHHHHHHhC
Q 042728 322 ALPPKEALQLFEEIVG 337 (486)
Q Consensus 322 ~L~~~e~~~Lf~~~~~ 337 (486)
+++.+|..+++...+.
T Consensus 195 ~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 195 DYTPEELLQIAKIMLE 210 (287)
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999988775
No 103
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.15 E-value=2.1e-05 Score=85.86 Aligned_cols=158 Identities=13% Similarity=0.204 Sum_probs=91.3
Q ss_pred CccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCC----C-eEEEEEeCCCCCHHHHHHHH
Q 042728 156 DFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLF----D-KVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~-~~~wv~vs~~~~~~~~~~~i 230 (486)
..++++||+.++.++++.|.......+.++|++|+|||++|..++......... . .+++++++.-..
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a-------- 247 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA-------- 247 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh--------
Confidence 356799999999999999977766678899999999999999999887432111 1 223333221100
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEEEeCCCCccc---------cccccCCCCCcccccccCCCCCcEEEE
Q 042728 231 AFDLGMEFGLNENEFQRAERLHERLK-KEKQLLIILDNIWTKLE---------LDKFGIPTGDVAEKDRKDDQRRCTIIL 300 (486)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~L~-~~kr~LlVlDdv~~~~~---------~~~l~~~~~~~~~~~~~~~~~~s~ilv 300 (486)
+... ....+.....+.+.+. .+++.+|++|+++.... ...+..|.- .....++|-
T Consensus 248 ----g~~~--~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l---------~~g~l~~Ig 312 (857)
T PRK10865 248 ----GAKY--RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL---------ARGELHCVG 312 (857)
T ss_pred ----ccch--hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh---------hcCCCeEEE
Confidence 0000 1112223333333332 24679999999986521 122222221 222345665
Q ss_pred EeCchhhh------hhhcCCcccEEcCCCChHHHHHHHHHHh
Q 042728 301 TSRKQDLL------RIDMNSQKNFQIDALPPKEALQLFEEIV 336 (486)
Q Consensus 301 TtR~~~v~------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 336 (486)
+|...+.. .........+.+..-+.++...++....
T Consensus 313 aTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred cCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 55554421 1112233457777778899998887554
No 104
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.14 E-value=4e-06 Score=89.48 Aligned_cols=158 Identities=18% Similarity=0.239 Sum_probs=93.6
Q ss_pred ccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHcc-C---CCeEEEEEeCCCCCHHHHHHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEEN-L---FDKVVMAEVTQTPDHHKIQNKLAF 232 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~---f~~~~wv~vs~~~~~~~~~~~i~~ 232 (486)
.++++||+.++.++++.|.......+.++|++|+|||++|+.+++...... . .++.+|.. +... ++.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~----lla 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS----LLA 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH----Hhc
Confidence 457999999999999999776556677999999999999999998764332 1 13344421 1111 110
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc----------ccccccCCCCCcccccccCCCCCcEEEEEe
Q 042728 233 DLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL----------ELDKFGIPTGDVAEKDRKDDQRRCTIILTS 302 (486)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~~~~~~~~~~s~ilvTt 302 (486)
+.. .....+.....+.+.+...++.+|++|+++... +...+..++- .....++|.+|
T Consensus 256 --G~~--~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---------~~g~i~vIgAT 322 (758)
T PRK11034 256 --GTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIGST 322 (758)
T ss_pred --ccc--hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---------hCCCeEEEecC
Confidence 110 011233344445555544456899999997431 1111111111 22234556555
Q ss_pred Cchhhhh------hhcCCcccEEcCCCChHHHHHHHHHHh
Q 042728 303 RKQDLLR------IDMNSQKNFQIDALPPKEALQLFEEIV 336 (486)
Q Consensus 303 R~~~v~~------~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 336 (486)
...+... ........+.+++.+.++..+++....
T Consensus 323 t~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred ChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 5443211 012344679999999999999988543
No 105
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.14 E-value=6.5e-05 Score=75.60 Aligned_cols=161 Identities=17% Similarity=0.174 Sum_probs=96.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEK 259 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (486)
..+.|+|++|+|||+|++.+++....+..-..++|++. .++...+...+... . ...+.+.+.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~----~~~~~~~~~~-- 199 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN-----K----MEEFKEKYRS-- 199 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----C----HHHHHHHHHh--
Confidence 46889999999999999999998865422234566643 33444455444321 1 2233444442
Q ss_pred cEEEEEeCCCCccc---c-ccccCCCCCcccccccCCCCCcEEEEEeCchhhhh--------hhcCCcccEEcCCCChHH
Q 042728 260 QLLIILDNIWTKLE---L-DKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLLR--------IDMNSQKNFQIDALPPKE 327 (486)
Q Consensus 260 r~LlVlDdv~~~~~---~-~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~--------~~~~~~~~~~l~~L~~~e 327 (486)
.-+|+|||++.... + +.+...+.. ....+..+|+|+....-.. ..+.....+.+++.+.++
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~-------~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~ 272 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNA-------LHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLET 272 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHH-------HHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHH
Confidence 34899999985421 1 111111100 0123556888876533211 012233568999999999
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHH
Q 042728 328 ALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALST 365 (486)
Q Consensus 328 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 365 (486)
-..++.+.+..... .-.+++...|++.+.|.+-.+.-
T Consensus 273 r~~il~~~~~~~~~-~l~~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 273 RLAILQKKAEEEGL-ELPDEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred HHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHHH
Confidence 99999998864322 22356788899999987764443
No 106
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.14 E-value=5e-05 Score=77.44 Aligned_cols=181 Identities=19% Similarity=0.214 Sum_probs=107.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEK 259 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (486)
..+.|+|++|+|||+|++.+++.......-..++|++.. ++...+...+.. .. ...+.+.+. +
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~-----~~----~~~~~~~~~--~ 211 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRN-----NT----MEEFKEKYR--S 211 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHc-----Cc----HHHHHHHHh--c
Confidence 568899999999999999999998765323345666443 333444444321 11 123344444 3
Q ss_pred cEEEEEeCCCCccc---c-ccccCCCCCcccccccCCCCCcEEEEEeCchhhh--------hhhcCCcccEEcCCCChHH
Q 042728 260 QLLIILDNIWTKLE---L-DKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLL--------RIDMNSQKNFQIDALPPKE 327 (486)
Q Consensus 260 r~LlVlDdv~~~~~---~-~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~~e 327 (486)
.-+|+|||++.... + +.+...+.. + ...|..||+||....-. ...+.....+++++.+.++
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~----l---~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~ 284 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNA----L---HEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLET 284 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHH----H---HHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHH
Confidence 45899999975421 1 112111100 0 12345578877654311 1122334679999999999
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhc--------CCCHHHHHHHHHHH
Q 042728 328 ALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANALK--------TKELDFWKDALNQL 385 (486)
Q Consensus 328 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~--------~~~~~~w~~~l~~l 385 (486)
-..++.+.+.... ..-.+++...|++.+.|..-.+.-+-..|. .-+....+.++..+
T Consensus 285 r~~il~~~~~~~~-~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 285 RIAILKKKAEEEG-IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 9999999886422 122346788999999988764433322221 12566677777754
No 107
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.14 E-value=4.4e-05 Score=67.56 Aligned_cols=104 Identities=14% Similarity=0.213 Sum_probs=70.0
Q ss_pred cccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAF 232 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (486)
.+....++||-++.++.|.-...+++.+-+.|.||+|+||||-+..+++..-....=+.++=.+.|.....+-+-..|-.
T Consensus 22 rP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~ 101 (333)
T KOG0991|consen 22 RPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKM 101 (333)
T ss_pred CchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHH
Confidence 33445678999999999988888899999999999999999999999988765433345555666665544433332221
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 042728 233 DLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 271 (486)
-..... .|..++.-++|||..++.
T Consensus 102 FAQ~kv---------------~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 102 FAQKKV---------------TLPPGRHKIIILDEADSM 125 (333)
T ss_pred HHHhhc---------------cCCCCceeEEEeeccchh
Confidence 111000 011244568889998865
No 108
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.13 E-value=5.3e-05 Score=75.25 Aligned_cols=184 Identities=15% Similarity=0.191 Sum_probs=97.9
Q ss_pred ccCccccccHHHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC
Q 042728 154 VKDFEAFDSRMKVFQDVMEALR----D---------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT 220 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 220 (486)
......+.|-+...++|.+.+. . ..++-+.++|++|+|||+||+.+++..... | +.+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--f---i~i~~--- 212 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F---IRVVG--- 212 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E---EEEeh---
Confidence 3345668898888888777652 1 235678999999999999999999875321 2 22211
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc--------cc-cccCCCCCccccc-cc
Q 042728 221 PDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE--------LD-KFGIPTGDVAEKD-RK 290 (486)
Q Consensus 221 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~--------~~-~l~~~~~~~~~~~-~~ 290 (486)
..+.... ++ .. ......+........+.+|+||+++.... .+ .....+..++..+ ..
T Consensus 213 ---s~l~~k~---~g------e~-~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 213 ---SEFVQKY---LG------EG-PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred ---HHHHHHh---cc------hh-HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 1111110 11 11 12233333444445789999999874310 00 0000000000000 00
Q ss_pred CCCCCcEEEEEeCchhhhhhh-c---CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCh
Q 042728 291 DDQRRCTIILTSRKQDLLRID-M---NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLP 360 (486)
Q Consensus 291 ~~~~~s~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 360 (486)
....+..||+||......... . .-...+.++..+.++-.++|..+.......++. ....+++.+.|..
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~s 351 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKIS 351 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCC
Confidence 123466788888765432211 2 223568899889998888888766532222211 2345666666643
No 109
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.13 E-value=0.00012 Score=66.29 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=41.8
Q ss_pred cCccccccHHHHHHHHHHHh----ccCCccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 155 KDFEAFDSRMKVFQDVMEAL----RDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
...+.++|-+...+.|.+.. ......-+.++|..|+|||++++.+.+....+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 44567899999888887654 33455678899999999999999999988765
No 110
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.12 E-value=5e-05 Score=76.76 Aligned_cols=183 Identities=13% Similarity=0.118 Sum_probs=106.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKE 258 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 258 (486)
..-+.|+|++|+|||+|++.+++.......-..++|++. .+++..+...+... .. ..+.+.+. .
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~----~~f~~~~~-~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KL----NEFREKYR-K 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cH----HHHHHHHH-h
Confidence 345899999999999999999998765422235677754 34556665554321 11 22333333 1
Q ss_pred CcEEEEEeCCCCccc---c-ccccCCCCCcccccccCCCCCcEEEEEeCchh-hhh----h---hcCCcccEEcCCCChH
Q 042728 259 KQLLIILDNIWTKLE---L-DKFGIPTGDVAEKDRKDDQRRCTIILTSRKQD-LLR----I---DMNSQKNFQIDALPPK 326 (486)
Q Consensus 259 kr~LlVlDdv~~~~~---~-~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-v~~----~---~~~~~~~~~l~~L~~~ 326 (486)
+.-+|++||++.... + ..+...+.. ....|..||+||.... -.. . .+.....+.+++.+.+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~-------l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e 266 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNE-------LHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEE 266 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHH-------HHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHH
Confidence 346899999975411 1 112111111 0223456888875332 111 0 1233457899999999
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHh------c--CCCHHHHHHHHHHH
Q 042728 327 EALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANAL------K--TKELDFWKDALNQL 385 (486)
Q Consensus 327 e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L------~--~~~~~~w~~~l~~l 385 (486)
+-..++++.+..... .-.+++...|++.+.|..-.+.-+-..| . .-+......++..+
T Consensus 267 ~r~~IL~~~~~~~~~-~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 267 TRKKIARKMLEIEHG-ELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHHHHHHHHhcCC-CCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 999999988763221 2235678889999888655443332222 1 23566666666654
No 111
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.10 E-value=3.7e-05 Score=76.62 Aligned_cols=137 Identities=21% Similarity=0.223 Sum_probs=85.1
Q ss_pred cHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC
Q 042728 162 SRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLN 241 (486)
Q Consensus 162 gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 241 (486)
.|..-..++.+.+..... ++.|.|+-++||||+++.+....... .++++.-+......-+.+
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d------------ 82 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLD------------ 82 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHH------------
Confidence 344556666666544443 89999999999999996666554322 555544332211111111
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeCchhhhh-----hhcCCcc
Q 042728 242 ENEFQRAERLHERLKKEKQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLLR-----IDMNSQK 316 (486)
Q Consensus 242 ~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~-----~~~~~~~ 316 (486)
....+.+.-. .++.+++||.|+....|......+.+ .++. +|++|+-+..... ...+...
T Consensus 83 -----~~~~~~~~~~-~~~~yifLDEIq~v~~W~~~lk~l~d--------~~~~-~v~itgsss~ll~~~~~~~L~GR~~ 147 (398)
T COG1373 83 -----LLRAYIELKE-REKSYIFLDEIQNVPDWERALKYLYD--------RGNL-DVLITGSSSSLLSKEISESLAGRGK 147 (398)
T ss_pred -----HHHHHHHhhc-cCCceEEEecccCchhHHHHHHHHHc--------cccc-eEEEECCchhhhccchhhhcCCCce
Confidence 1111111111 25689999999999999877666554 4444 8888888776432 1234566
Q ss_pred cEEcCCCChHHHHHH
Q 042728 317 NFQIDALPPKEALQL 331 (486)
Q Consensus 317 ~~~l~~L~~~e~~~L 331 (486)
.+++.|||..|...+
T Consensus 148 ~~~l~PlSF~Efl~~ 162 (398)
T COG1373 148 DLELYPLSFREFLKL 162 (398)
T ss_pred eEEECCCCHHHHHhh
Confidence 799999999998764
No 112
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=0.00014 Score=70.33 Aligned_cols=155 Identities=14% Similarity=0.168 Sum_probs=89.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHcc--------------------CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEEN--------------------LFDKVVMAEVTQTPDHHKIQNKLAFDLGMEF 238 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 238 (486)
.+.+.++|+.|+||||+|..++...--.. |.| ..|+.-...
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~------------------ 82 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEA------------------ 82 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCC------------------
Confidence 45688999999999999999998764321 222 122211000
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCc--cccccccCCCCCcccccccCCCCCcEEEEEeCchh-hhhhh
Q 042728 239 GLNENEFQRAERLHERLK----KEKQLLIILDNIWTK--LELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQD-LLRID 311 (486)
Q Consensus 239 ~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-v~~~~ 311 (486)
...-.. +.+..+.+.+. .+++-++|+|+++.. ...+.+...+.. ...++.+|+||.+.. +....
T Consensus 83 ~~~i~i-d~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE--------Pp~~~~fiL~t~~~~~ll~TI 153 (328)
T PRK05707 83 DKTIKV-DQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEE--------PSGDTVLLLISHQPSRLLPTI 153 (328)
T ss_pred CCCCCH-HHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhC--------CCCCeEEEEEECChhhCcHHH
Confidence 000111 22222333332 123445678999865 233333333322 334666777776654 33323
Q ss_pred cCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 312 MNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 312 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
.+....+.+.+++.+++.+.+...... ...+.+..++..++|.|+....+
T Consensus 154 ~SRc~~~~~~~~~~~~~~~~L~~~~~~-----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 154 KSRCQQQACPLPSNEESLQWLQQALPE-----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHhccc-----CChHHHHHHHHHcCCCHHHHHHH
Confidence 455678999999999999999875421 11234567889999999865544
No 113
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.05 E-value=0.00035 Score=63.15 Aligned_cols=195 Identities=18% Similarity=0.213 Sum_probs=112.9
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCC--
Q 042728 165 KVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVT-QTPDHHKIQNKLAFDLGMEFGLN-- 241 (486)
Q Consensus 165 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~-- 241 (486)
+.+..+...+. ++..++.++|.-|.|||.+.+........ +.++-+.+. +..+...+...|+..+..++...
T Consensus 38 e~l~~l~~~i~-d~qg~~~vtGevGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~ 112 (269)
T COG3267 38 EALLMLHAAIA-DGQGILAVTGEVGSGKTVLRRALLASLNE----DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVN 112 (269)
T ss_pred HHHHHHHHHHh-cCCceEEEEecCCCchhHHHHHHHHhcCC----CceEEEEecCcchhHHHHHHHHHHHhccCccchhH
Confidence 34444444443 45578999999999999999944443322 122223333 45577888889988887743211
Q ss_pred CCHHHHHHHHHHHHhcCCc-EEEEEeCCCCc--cccccccCCCCCcccccccCCCCCcEEEEEeCchh-------hhhhh
Q 042728 242 ENEFQRAERLHERLKKEKQ-LLIILDNIWTK--LELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQD-------LLRID 311 (486)
Q Consensus 242 ~~~~~~~~~l~~~L~~~kr-~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-------v~~~~ 311 (486)
.........+....++++| ..+++|+.... +.++.+...... -......-+|+..-..+- +....
T Consensus 113 ~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl-----~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~ 187 (269)
T COG3267 113 AVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNL-----EEDSSKLLSIVLIGQPKLRPRLRLPVLREL 187 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhh-----cccccCceeeeecCCcccchhhchHHHHhh
Confidence 1233444555555666677 99999999765 222222110000 000111122333221110 11001
Q ss_pred cCCcc-cEEcCCCChHHHHHHHHHHhCCCCC--CCchHHHHHHHHHHcCCChHHHHHHHHH
Q 042728 312 MNSQK-NFQIDALPPKEALQLFEEIVGDSTK--ISAFQSTANEIVERCGGLPVALSTVANA 369 (486)
Q Consensus 312 ~~~~~-~~~l~~L~~~e~~~Lf~~~~~~~~~--~~~~~~~~~~i~~~~~GlPlai~~~~~~ 369 (486)
..... .|++.|++.++...+++.++.+... +--..+....|.....|.|.+|+.++..
T Consensus 188 ~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 188 EQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred hheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 11122 3999999999999999988874322 2223456788999999999999988664
No 114
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.05 E-value=0.00037 Score=68.18 Aligned_cols=195 Identities=18% Similarity=0.270 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHH-HHHHHHHhHccCCCeEEEEEeCCC---CCHHHHHHHHHHHhCC--
Q 042728 163 RMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIV-KQVAKQVMEENLFDKVVMAEVTQT---PDHHKIQNKLAFDLGM-- 236 (486)
Q Consensus 163 R~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~wv~vs~~---~~~~~~~~~i~~~l~~-- 236 (486)
|.+.+++|..||....-..|+|.||-|+||+.|+ .++.++. ..++.+.+.+- .+-..++..++.++|-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR------KNVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC------CCEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5678899999998877789999999999999999 7776552 33677765432 2333444444444431
Q ss_pred ----------------------CCCCCCCHHHHHHHHHHH----Hhc-------------------------CCcEEEEE
Q 042728 237 ----------------------EFGLNENEFQRAERLHER----LKK-------------------------EKQLLIIL 265 (486)
Q Consensus 237 ----------------------~~~~~~~~~~~~~~l~~~----L~~-------------------------~kr~LlVl 265 (486)
......+.+.....+... |++ .++-+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 222234444433332211 110 12679999
Q ss_pred eCCCCc-----------cccccccCCCCCcccccccCCCCCcEEEEEeCchhhhhh---hc--CCcccEEcCCCChHHHH
Q 042728 266 DNIWTK-----------LELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLLRI---DM--NSQKNFQIDALPPKEAL 329 (486)
Q Consensus 266 Ddv~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~---~~--~~~~~~~l~~L~~~e~~ 329 (486)
||+... .+|... +. .++-.+||++|-+...... .+ ...+.+.|...+++.|.
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~---Lv---------~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak 222 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAAS---LV---------QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAK 222 (431)
T ss_pred cchhccCcccchHHHHHHHHHHH---HH---------hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHH
Confidence 998643 123322 11 3345578888877654321 22 34567999999999999
Q ss_pred HHHHHHhCCCCCC-------------------CchHHHHHHHHHHcCCChHHHHHHHHHhc-CCCH
Q 042728 330 QLFEEIVGDSTKI-------------------SAFQSTANEIVERCGGLPVALSTVANALK-TKEL 375 (486)
Q Consensus 330 ~Lf~~~~~~~~~~-------------------~~~~~~~~~i~~~~~GlPlai~~~~~~L~-~~~~ 375 (486)
.+...++...... ..........++.+||=-.-+..+++.++ +.++
T Consensus 223 ~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 223 QYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 9999988642110 12344566788899999999999999998 4444
No 115
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.05 E-value=9.3e-05 Score=76.41 Aligned_cols=209 Identities=15% Similarity=0.199 Sum_probs=106.7
Q ss_pred ccCccccccHHHHHHHHHHHh---cc---------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC
Q 042728 154 VKDFEAFDSRMKVFQDVMEAL---RD---------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP 221 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 221 (486)
....+++.|-+...+++.+.+ .. ..++-+.++|++|+|||+||+.+++..... ++.++.
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------~~~i~~-- 121 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISG-- 121 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------eeeccH--
Confidence 344567888877666555443 21 223458899999999999999998765321 222221
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcccccc--cc-------CCCCCcccccc-cC
Q 042728 222 DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLELDK--FG-------IPTGDVAEKDR-KD 291 (486)
Q Consensus 222 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~--l~-------~~~~~~~~~~~-~~ 291 (486)
.++.... . ..... ....+.+......+.+|+||+++....-.. +. ..+..++..+- ..
T Consensus 122 --~~~~~~~---~------g~~~~-~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 122 --SDFVEMF---V------GVGAS-RVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 189 (495)
T ss_pred --HHHHHHH---h------cccHH-HHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence 1111110 0 11111 222333333334679999999975411000 00 00000000000 01
Q ss_pred CCCCcEEEEEeCchhhhhhh-c---CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCC-hHHHHHH
Q 042728 292 DQRRCTIILTSRKQDLLRID-M---NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGL-PVALSTV 366 (486)
Q Consensus 292 ~~~~s~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl-Plai~~~ 366 (486)
...+..||.||......... . .-...+.++..+.++-.++|+.++......+. .....+++.+.|. +--|..+
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCCHHHHHHH
Confidence 33445566677554321111 1 22357889999999999999887754322211 2345788888873 3444444
Q ss_pred HH---Hh--c-C---CCHHHHHHHHHHH
Q 042728 367 AN---AL--K-T---KELDFWKDALNQL 385 (486)
Q Consensus 367 ~~---~L--~-~---~~~~~w~~~l~~l 385 (486)
.. .. + + -+...+..++...
T Consensus 268 ~~eA~~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 268 LNEAALLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 32 11 1 2 2456666666654
No 116
>PRK06620 hypothetical protein; Validated
Probab=98.05 E-value=2.8e-05 Score=70.59 Aligned_cols=135 Identities=14% Similarity=0.026 Sum_probs=78.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEK 259 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (486)
+.+.|+|++|+|||+|++.+++... ..++. ..+. .. +.+. .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~-------~~~~~--~~~~--------------------~~--------~~~~--~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN-------AYIIK--DIFF--------------------NE--------EILE--K 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC-------CEEcc--hhhh--------------------ch--------hHHh--c
Confidence 5689999999999999998765532 11211 0000 00 1112 2
Q ss_pred cEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeCchhhh------hhhcCCcccEEcCCCChHHHHHHHH
Q 042728 260 QLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLL------RIDMNSQKNFQIDALPPKEALQLFE 333 (486)
Q Consensus 260 r~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~------~~~~~~~~~~~l~~L~~~e~~~Lf~ 333 (486)
.-+|++||++...+. .+...+.. + ...|..+|+|++..+.. ...+.....+++++++.++-..+++
T Consensus 86 ~d~lliDdi~~~~~~-~lf~l~N~----~---~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~ 157 (214)
T PRK06620 86 YNAFIIEDIENWQEP-ALLHIFNI----I---NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIF 157 (214)
T ss_pred CCEEEEeccccchHH-HHHHHHHH----H---HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHH
Confidence 357889999743211 11111000 0 23466899998865431 1122344579999999999888888
Q ss_pred HHhCCCCCCCchHHHHHHHHHHcCCChHH
Q 042728 334 EIVGDSTKISAFQSTANEIVERCGGLPVA 362 (486)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~i~~~~~GlPla 362 (486)
+.+.... -.-.+++.+-|++.+.|.--.
T Consensus 158 k~~~~~~-l~l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 158 KHFSISS-VTISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred HHHHHcC-CCCCHHHHHHHHHHccCCHHH
Confidence 8765321 122246777788888775433
No 117
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.04 E-value=9.2e-05 Score=74.12 Aligned_cols=183 Identities=15% Similarity=0.181 Sum_probs=97.9
Q ss_pred cCccccccHHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC
Q 042728 155 KDFEAFDSRMKVFQDVMEALRD-------------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP 221 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 221 (486)
.....+.|.+..+++|.+.+.- ...+-+.++|++|+|||++|+.+++.... .| +.+...
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~--~f-----i~V~~s- 251 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA--TF-----LRVVGS- 251 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC--CE-----EEEecc-
Confidence 3445678899988888876631 23456889999999999999999987642 23 222111
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc--cccccC-------CCCCccccc-ccC
Q 042728 222 DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE--LDKFGI-------PTGDVAEKD-RKD 291 (486)
Q Consensus 222 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~--~~~l~~-------~~~~~~~~~-~~~ 291 (486)
++.... + .. .......+.+......+.+|+||+++.... -..... .+..++..+ ...
T Consensus 252 ---eL~~k~---~------Ge-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 252 ---ELIQKY---L------GD-GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred ---hhhhhh---c------ch-HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 111100 0 01 112233333333335789999999864310 000000 000000000 001
Q ss_pred CCCCcEEEEEeCchhhhhhhc----CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCh
Q 042728 292 DQRRCTIILTSRKQDLLRIDM----NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLP 360 (486)
Q Consensus 292 ~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 360 (486)
...+..||+||.......... .-...|.++..+.++-.++|..++......+. .....++..+.|+-
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d--vdl~~la~~t~g~s 389 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED--VDLEEFIMAKDELS 389 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC--cCHHHHHHhcCCCC
Confidence 234567888887655432221 12357899999999999999987754322111 11345566665543
No 118
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.04 E-value=0.00012 Score=75.57 Aligned_cols=181 Identities=13% Similarity=0.109 Sum_probs=105.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEK 259 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (486)
..+.|+|..|+|||.|++.+++.......-..++|++. .++...+...+.. . ....+.+.+. +
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~-----~----~~~~f~~~y~--~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRD-----G----KGDSFRRRYR--E 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHh-----c----cHHHHHHHhh--c
Confidence 45899999999999999999998765322234566643 3444444443321 1 1223334444 2
Q ss_pred cEEEEEeCCCCcc---cccc-ccCCCCCcccccccCCCCCcEEEEEeCchhhh--------hhhcCCcccEEcCCCChHH
Q 042728 260 QLLIILDNIWTKL---ELDK-FGIPTGDVAEKDRKDDQRRCTIILTSRKQDLL--------RIDMNSQKNFQIDALPPKE 327 (486)
Q Consensus 260 r~LlVlDdv~~~~---~~~~-l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~~e 327 (486)
.=+|+|||+.... .|.. +...+. . ....+..||+||....-. ...+.....+.+++.+.+.
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N----~---l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~Et 450 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFN----T---LHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELET 450 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHH----H---HHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHH
Confidence 3589999997552 2221 111111 1 123355688888764211 1123445679999999999
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhc------C--CCHHHHHHHHHHH
Q 042728 328 ALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANALK------T--KELDFWKDALNQL 385 (486)
Q Consensus 328 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~------~--~~~~~w~~~l~~l 385 (486)
-..++.+++..... .--.++.+.|++.+.+..-.|.-+...|. + .+...-+.++..+
T Consensus 451 R~aIL~kka~~r~l-~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~ 515 (617)
T PRK14086 451 RIAILRKKAVQEQL-NAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDL 515 (617)
T ss_pred HHHHHHHHHHhcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 99999988764322 22356788888888776554443322221 1 2445555666654
No 119
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=0.00016 Score=70.34 Aligned_cols=146 Identities=16% Similarity=0.205 Sum_probs=87.1
Q ss_pred cccc-HHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHcc--------------------CCCeEEEEE
Q 042728 159 AFDS-RMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEEN--------------------LFDKVVMAE 216 (486)
Q Consensus 159 ~~~g-R~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~ 216 (486)
.++| .+..++.|...+..++. +...++|+.|+||||+|..+.+..--.. |.|......
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc
Confidence 4566 77788888888876654 5568999999999999999987764221 222111110
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccccCCCCCccccccc
Q 042728 217 VTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRK 290 (486)
Q Consensus 217 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~ 290 (486)
-+.. ... +.+..+.+.+. .+++=++|+|+++... ..+.+...+..
T Consensus 86 ~~~~---------------------i~i-d~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE------- 136 (329)
T PRK08058 86 DGQS---------------------IKK-DQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE------- 136 (329)
T ss_pred cccc---------------------CCH-HHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC-------
Confidence 0111 111 12222333322 1345678999987652 23333333332
Q ss_pred CCCCCcEEEEEeCchh-hhhhhcCCcccEEcCCCChHHHHHHHHH
Q 042728 291 DDQRRCTIILTSRKQD-LLRIDMNSQKNFQIDALPPKEALQLFEE 334 (486)
Q Consensus 291 ~~~~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~ 334 (486)
...++.+|++|.+.. +.....+....+++.+++.++..+.+..
T Consensus 137 -Pp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 -PSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred -CCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 444676776665543 3332345667899999999999888875
No 120
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.0012 Score=68.17 Aligned_cols=168 Identities=19% Similarity=0.172 Sum_probs=95.4
Q ss_pred ccccccHHHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALR------DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
..+-+|-++..++|++.|. .-.-++++++|++|+|||+|++.+++....+ | +-++++.-.+..++-..=
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhcccc
Confidence 3456788999999999882 1244799999999999999999999988654 4 345666665655443211
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc---------ccccccCCCC--CcccccccC--CCCCcE
Q 042728 231 AFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL---------ELDKFGIPTG--DVAEKDRKD--DQRRCT 297 (486)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~---------~~~~l~~~~~--~~~~~~~~~--~~~~s~ 297 (486)
-..+|. -+....+.+.+. +.+.-|++||.++... .+-+...|-. .|...-..- .-....
T Consensus 397 RTYIGa------mPGrIiQ~mkka--~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 397 RTYIGA------MPGKIIQGMKKA--GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred cccccc------CChHHHHHHHHh--CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 111111 112233333333 2356789999997541 0111111100 000000000 111222
Q ss_pred EEEEeCchh-hhhhhcCCcccEEcCCCChHHHHHHHHHHhC
Q 042728 298 IILTSRKQD-LLRIDMNSQKNFQIDALPPKEALQLFEEIVG 337 (486)
Q Consensus 298 ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 337 (486)
.|.|..+-+ +..-.+.....|++.+-+.+|-.++-++++-
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 344444433 3333456778999999999999998887764
No 121
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.98 E-value=0.0013 Score=71.23 Aligned_cols=168 Identities=16% Similarity=0.141 Sum_probs=93.4
Q ss_pred ccccccHHHHHHHHHHHhcc------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALRD------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
....+|.+...+.|.++|.. ....++.++|++|+||||+++.++...... | +-++.+...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~--~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK--Y---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E---EEEEcCCCCCHHHhccch
Confidence 45588999999999988742 244679999999999999999999876422 2 223444444443332211
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc-c-----ccccCCCCC-----cccc--cccCCCCCcE
Q 042728 231 AFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE-L-----DKFGIPTGD-----VAEK--DRKDDQRRCT 297 (486)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~-~-----~~l~~~~~~-----~~~~--~~~~~~~~s~ 297 (486)
....+. ........+...- ...-+++||.++.... . ..+...+.. +... ...-...+..
T Consensus 396 ~~~~g~------~~G~~~~~l~~~~--~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 396 RTYIGS------MPGKLIQKMAKVG--VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hccCCC------CCcHHHHHHHhcC--CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 111111 1112222222211 1234788999975421 0 111100000 0000 0000224555
Q ss_pred EEEEeCchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhC
Q 042728 298 IILTSRKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVG 337 (486)
Q Consensus 298 ilvTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 337 (486)
+|.|+.+..+.....+....+++.+++.++-.++.++++.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhh
Confidence 6677766554443445567899999999999999887763
No 122
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.98 E-value=0.00025 Score=71.67 Aligned_cols=154 Identities=12% Similarity=0.114 Sum_probs=91.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEK 259 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (486)
.-+.|+|++|+|||+|++.+++..... ...+++++ ...+...+...+... ....+.+.+. +
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~---------~~~~f~~~~~--~ 202 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG---------EMQRFRQFYR--N 202 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc---------hHHHHHHHcc--c
Confidence 458899999999999999999988653 23456664 234444555544311 1123333333 3
Q ss_pred cEEEEEeCCCCcccc----ccccCCCCCcccccccCCCCCcEEEEEeCchhh-----hh---hhcCCcccEEcCCCChHH
Q 042728 260 QLLIILDNIWTKLEL----DKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDL-----LR---IDMNSQKNFQIDALPPKE 327 (486)
Q Consensus 260 r~LlVlDdv~~~~~~----~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v-----~~---~~~~~~~~~~l~~L~~~e 327 (486)
.-+|++||+...... +.+...+.. + ...|..||+||..... .. ..+.....+.+++++.++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~----l---~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~ 275 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNS----L---HTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEG 275 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHH----H---HHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHH
Confidence 458899999764221 111111110 0 1134568888865321 11 112334688999999999
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCh
Q 042728 328 ALQLFEEIVGDSTKISAFQSTANEIVERCGGLP 360 (486)
Q Consensus 328 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 360 (486)
-..++.+.+.... ..-.+++...|+..+.|.-
T Consensus 276 r~~iL~~k~~~~~-~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 276 LRSFLERKAEALS-IRIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCH
Confidence 9999998876422 1222456777877777543
No 123
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.94 E-value=4.7e-05 Score=79.40 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=43.5
Q ss_pred cccccCccccccHHHHHHHHHHHhccC-----CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 151 HIQVKDFEAFDSRMKVFQDVMEALRDD-----KLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 151 ~~~~~~~~~~~gR~~~~~~l~~~L~~~-----~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
...|...+.++|.++.++.+..++... ..+++.|+|++|+||||+++.++....
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 344556778999999999999988643 235699999999999999999997753
No 124
>CHL00176 ftsH cell division protein; Validated
Probab=97.93 E-value=0.00027 Score=74.32 Aligned_cols=174 Identities=14% Similarity=0.217 Sum_probs=95.1
Q ss_pred CccccccHHHHHHHHHH---HhccC---------CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCH
Q 042728 156 DFEAFDSRMKVFQDVME---ALRDD---------KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDH 223 (486)
Q Consensus 156 ~~~~~~gR~~~~~~l~~---~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~ 223 (486)
...++.|.++..+++.+ .+... .++-+.++|++|+|||+||+.++...... |+.++..
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~s--- 250 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISGS--- 250 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccHH---
Confidence 34567787666555544 44322 23568999999999999999998765321 2322211
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc------------c----cccccCCCCCcccc
Q 042728 224 HKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL------------E----LDKFGIPTGDVAEK 287 (486)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~------------~----~~~l~~~~~~~~~~ 287 (486)
++.... .+ .. ......+.+......+++|++||++... . +..+......
T Consensus 251 -~f~~~~---~g------~~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg---- 315 (638)
T CHL00176 251 -EFVEMF---VG------VG-AARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG---- 315 (638)
T ss_pred -HHHHHh---hh------hh-HHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcc----
Confidence 111100 00 01 1122233333334578999999997431 0 1111111100
Q ss_pred cccCCCCCcEEEEEeCchhhhhhh-c---CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCC
Q 042728 288 DRKDDQRRCTIILTSRKQDLLRID-M---NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGG 358 (486)
Q Consensus 288 ~~~~~~~~s~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~G 358 (486)
.....+..||.||......... . .-...+.++..+.++-.++++.++......+ ......+++.+.|
T Consensus 316 --~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G 386 (638)
T CHL00176 316 --FKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPG 386 (638)
T ss_pred --ccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCC
Confidence 0133456677777664432211 1 1235788999999999999998876422111 2345678888887
No 125
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.92 E-value=0.0015 Score=71.21 Aligned_cols=166 Identities=21% Similarity=0.195 Sum_probs=86.3
Q ss_pred ccccccHHHHHHHHHHHhcc------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALRD------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
....+|.+...+.|.+++.. ...+++.++|++|+|||++|+.+++..... | .-++++...+..++..
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~--~---~~i~~~~~~~~~~i~g-- 391 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK--F---VRFSLGGVRDEAEIRG-- 391 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC--e---EEEeCCCcccHHHHcC--
Confidence 34578988888888886631 234579999999999999999999887432 3 2223333333322211
Q ss_pred HHHhCCCCC-CCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc---------cccccCC--CCCcccccc--cCCCCCc
Q 042728 231 AFDLGMEFG-LNENEFQRAERLHERLKKEKQLLIILDNIWTKLE---------LDKFGIP--TGDVAEKDR--KDDQRRC 296 (486)
Q Consensus 231 ~~~l~~~~~-~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~---------~~~l~~~--~~~~~~~~~--~~~~~~s 296 (486)
.... ...........+.... .++-+++||+++.... +-.+..+ ...+..... .-...+.
T Consensus 392 -----~~~~~~g~~~g~i~~~l~~~~--~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 392 -----HRRTYVGAMPGRIIQGLKKAK--TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred -----CCCceeCCCCchHHHHHHHhC--cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 1000 0111112222333222 2334789999976521 1011000 000000000 0011234
Q ss_pred EEEEEeCchh-hhhhhcCCcccEEcCCCChHHHHHHHHHHh
Q 042728 297 TIILTSRKQD-LLRIDMNSQKNFQIDALPPKEALQLFEEIV 336 (486)
Q Consensus 297 ~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 336 (486)
.+|.||.... +..........+.+.+++.++-.++++++.
T Consensus 465 ~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 4555655432 222123445689999999999999887754
No 126
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00078 Score=64.72 Aligned_cols=173 Identities=16% Similarity=0.204 Sum_probs=98.3
Q ss_pred HHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHcc-----------------CCCeEEEEEeCCCCCHHHH
Q 042728 165 KVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEEN-----------------LFDKVVMAEVTQTPDHHKI 226 (486)
Q Consensus 165 ~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-----------------~f~~~~wv~vs~~~~~~~~ 226 (486)
...+.|...+..++. +.+.++|+.|+||+++|..+++..--.+ |.| ..|+...+...
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~---- 85 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRT---- 85 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcc----
Confidence 455667777766654 4588999999999999999987764321 111 11221000000
Q ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc----CCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEE
Q 042728 227 QNKLAFDLGMEFGLNENEFQRAERLHERLKK----EKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIIL 300 (486)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~----~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilv 300 (486)
+.... ..-..+.+..+.+.+.. +++-++|+|+++... .-+.+...+.. ...++.+|+
T Consensus 86 --------~~k~~-~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE--------Pp~~~~fiL 148 (319)
T PRK08769 86 --------GDKLR-TEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE--------PSPGRYLWL 148 (319)
T ss_pred --------ccccc-ccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC--------CCCCCeEEE
Confidence 00000 00112223334443331 355699999998652 22222222222 334666666
Q ss_pred EeCc-hhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 301 TSRK-QDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 301 TtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
+|.+ ..+.....+....+.+.+++.+++.+.+... + .+ ...+..++..++|.|+.+..+
T Consensus 149 ~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~---~~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 149 ISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-G---VS---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred EECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-C---CC---hHHHHHHHHHcCCCHHHHHHH
Confidence 6654 4444334456678999999999999888763 1 11 223567899999999866543
No 127
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.00071 Score=65.13 Aligned_cols=177 Identities=10% Similarity=0.111 Sum_probs=96.6
Q ss_pred HHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCC-----CC-
Q 042728 166 VFQDVMEALRDDK-LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGM-----EF- 238 (486)
Q Consensus 166 ~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~-----~~- 238 (486)
..+.|...+..+. .+.+.++|+.|+||+++|..++...--...... .....-..-+.+...-.. .+
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHILEPI 82 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEccc
Confidence 4456777776655 366779999999999999999977643211100 000000000000000000 00
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEEEeCch-hhhhhh
Q 042728 239 GLNENEFQRAERLHERLK----KEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQ-DLLRID 311 (486)
Q Consensus 239 ~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~v~~~~ 311 (486)
....-..+.+..+.+.+. .+++=++|+|+++... ..+.+...+.. ...++.+|++|.+. .+....
T Consensus 83 ~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE--------Pp~~~~fiL~t~~~~~llpTI 154 (325)
T PRK06871 83 DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE--------PRPNTYFLLQADLSAALLPTI 154 (325)
T ss_pred cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC--------CCCCeEEEEEECChHhCchHH
Confidence 000111222333434433 2455688899998652 33333333332 44456666666654 344323
Q ss_pred cCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHH
Q 042728 312 MNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVAL 363 (486)
Q Consensus 312 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 363 (486)
.+....+.+.+++.++..+.+...... + ...+...+..++|.|+.+
T Consensus 155 ~SRC~~~~~~~~~~~~~~~~L~~~~~~----~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 155 YSRCQTWLIHPPEEQQALDWLQAQSSA----E--ISEILTALRINYGRPLLA 200 (325)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHhcc----C--hHHHHHHHHHcCCCHHHH
Confidence 455678999999999999988875421 1 123556788999999643
No 128
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.86 E-value=0.00017 Score=73.32 Aligned_cols=181 Identities=11% Similarity=0.097 Sum_probs=92.1
Q ss_pred ccccccHHHHHHHHHHHh---cc-------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHH
Q 042728 157 FEAFDSRMKVFQDVMEAL---RD-------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKI 226 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L---~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~ 226 (486)
..++.|.+...+.+.+.. .. ..++-|.++|++|+|||.+|+.+++..... | +-++.+. +
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~~------l 295 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVGK------L 295 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhHH------h
Confidence 445677776666555421 10 234668999999999999999999876422 1 2222211 1
Q ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcccc-ccccC------CCCCcccccccCCCCCcEEE
Q 042728 227 QNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLEL-DKFGI------PTGDVAEKDRKDDQRRCTII 299 (486)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~-~~l~~------~~~~~~~~~~~~~~~~s~il 299 (486)
+. .. ....+.....+.+......+++|++|+++..-.- ..-.. .+..++. .......+.-||
T Consensus 296 ~~----~~------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~-~l~~~~~~V~vI 364 (489)
T CHL00195 296 FG----GI------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFIT-WLSEKKSPVFVV 364 (489)
T ss_pred cc----cc------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHH-HHhcCCCceEEE
Confidence 10 00 0111223333333333457899999999743110 00000 0000000 011123344566
Q ss_pred EEeCchhhhhhhc----CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCC
Q 042728 300 LTSRKQDLLRIDM----NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGL 359 (486)
Q Consensus 300 vTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl 359 (486)
.||.........+ .-...+.++.-+.++-.++|+.++...............+++.+.|.
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~Gf 428 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKF 428 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCC
Confidence 6776554211111 22356888888899999999988764221110011235566666664
No 129
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=0.0018 Score=62.17 Aligned_cols=165 Identities=11% Similarity=0.135 Sum_probs=96.9
Q ss_pred HHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhHc-------------------cCCCeEEEEEeCCCCCHH
Q 042728 165 KVFQDVMEALRDDK-LNIIGVHGMGGVGKTTIVKQVAKQVMEE-------------------NLFDKVVMAEVTQTPDHH 224 (486)
Q Consensus 165 ~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv~vs~~~~~~ 224 (486)
...+.|...+..++ .+.+.++|+.|+||+++|..++...--. .|.|.. |+.-...
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~-~i~p~~~---- 84 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLH-VIKPEKE---- 84 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEE-EEecCcC----
Confidence 34556666665554 4578899999999999999998765322 122211 2211000
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEE
Q 042728 225 KIQNKLAFDLGMEFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTI 298 (486)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~i 298 (486)
...-..+ .+..+.+.+. .+++=++|+|+++... ..+.+...+.. ...++.+
T Consensus 85 --------------~~~I~vd-qiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE--------Pp~~t~f 141 (319)
T PRK06090 85 --------------GKSITVE-QIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE--------PAPNCLF 141 (319)
T ss_pred --------------CCcCCHH-HHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC--------CCCCeEE
Confidence 0011112 2233333332 1345688999998652 33333333332 3345666
Q ss_pred EEEeCc-hhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 299 ILTSRK-QDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 299 lvTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
|++|.+ ..+.....+....+.+.+++.++..+.+...- . . ....++..++|.|+.+..+
T Consensus 142 iL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~-~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 142 LLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---I-T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred EEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---C-c-----hHHHHHHHcCCCHHHHHHH
Confidence 665554 44544345667789999999999999887631 1 1 1346789999999976544
No 130
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00056 Score=64.76 Aligned_cols=202 Identities=15% Similarity=0.197 Sum_probs=113.8
Q ss_pred cccCccccccHHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALRD-------------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ 219 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 219 (486)
|..++..+-|-++.+++|.+.+.- +.++=|.++|++|.|||-||+.|+++.... | +.+..
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At--F-----Irvvg 218 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT--F-----IRVVG 218 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce--E-----EEecc
Confidence 444566677889999998887631 245678899999999999999999886432 3 33322
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc----------------ccccccCCCCC
Q 042728 220 TPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL----------------ELDKFGIPTGD 283 (486)
Q Consensus 220 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~ 283 (486)
. ++.+.. +|- -..+...+.+.-+.+.+++|++|.++... .+-++...+..
T Consensus 219 S----ElVqKY---iGE-------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG 284 (406)
T COG1222 219 S----ELVQKY---IGE-------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG 284 (406)
T ss_pred H----HHHHHH---hcc-------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC
Confidence 2 122111 111 12344555555566789999999987430 01111111111
Q ss_pred cccccccCCCCCcEEEEEeCchhhhhh-hc---CCcccEEcCCCChHHHHHHHHHHhCCCC--CCCchHHHHHHHHHHcC
Q 042728 284 VAEKDRKDDQRRCTIILTSRKQDLLRI-DM---NSQKNFQIDALPPKEALQLFEEIVGDST--KISAFQSTANEIVERCG 357 (486)
Q Consensus 284 ~~~~~~~~~~~~s~ilvTtR~~~v~~~-~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~--~~~~~~~~~~~i~~~~~ 357 (486)
.....+.|||..|...++..- .. .-...|+++.-+.+.-.++|+-+..... ..-++ +.|++.|.
T Consensus 285 ------FD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~ 354 (406)
T COG1222 285 ------FDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTE 354 (406)
T ss_pred ------CCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcC
Confidence 114456789988866654321 11 2235677775555555566766665322 22333 45666776
Q ss_pred CCh----HHHHHHHHHhc---CC---CHHHHHHHHHHH
Q 042728 358 GLP----VALSTVANALK---TK---ELDFWKDALNQL 385 (486)
Q Consensus 358 GlP----lai~~~~~~L~---~~---~~~~w~~~l~~l 385 (486)
|.- .|+.+=|++++ .+ +.+.+..+.+++
T Consensus 355 g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 355 GFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred CCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 654 34555566665 11 344555555443
No 131
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.82 E-value=8.3e-05 Score=62.37 Aligned_cols=89 Identities=21% Similarity=0.181 Sum_probs=52.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEK 259 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (486)
..+.|+|++|+||||+++.++....... ..+++++.+........... ....... ............+.......+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGK-KASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhcc-CCCCCHHHHHHHHHHHHHhcC
Confidence 5789999999999999999998875432 34666665544332222211 1111111 112333344445555555434
Q ss_pred cEEEEEeCCCCcc
Q 042728 260 QLLIILDNIWTKL 272 (486)
Q Consensus 260 r~LlVlDdv~~~~ 272 (486)
..++++|++....
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 5899999998763
No 132
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.79 E-value=0.00019 Score=62.17 Aligned_cols=137 Identities=14% Similarity=0.183 Sum_probs=76.5
Q ss_pred cHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHccCC------------------CeEEEEEeCCC--
Q 042728 162 SRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEENLF------------------DKVVMAEVTQT-- 220 (486)
Q Consensus 162 gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f------------------~~~~wv~vs~~-- 220 (486)
|.++..+.|.+.+.++.. +.+.++|+.|+||+++|..+++..-..... .-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 556778888888877765 467999999999999999999876432211 12333332222
Q ss_pred -CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc--cccccccCCCCCcccccccCCCCCcE
Q 042728 221 -PDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTK--LELDKFGIPTGDVAEKDRKDDQRRCT 297 (486)
Q Consensus 221 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ 297 (486)
...+++. .+...+..... .+++=++|+|+++.. +..+.+...+.. ...++.
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~-----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEe--------pp~~~~ 134 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS-----------------EGKYKVIIIDEADKLTEEAQNALLKTLEE--------PPENTY 134 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T-----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHS--------TTTTEE
T ss_pred hhhHHHHH-HHHHHHHHHHh-----------------cCCceEEEeehHhhhhHHHHHHHHHHhcC--------CCCCEE
Confidence 2332222 44444332221 135668999999865 334444333322 445788
Q ss_pred EEEEeCchh-hhhhhcCCcccEEcCCCC
Q 042728 298 IILTSRKQD-LLRIDMNSQKNFQIDALP 324 (486)
Q Consensus 298 ilvTtR~~~-v~~~~~~~~~~~~l~~L~ 324 (486)
+|++|.+.. +.....+....+.+.+||
T Consensus 135 fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 135 FILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEEEECChHHChHHHHhhceEEecCCCC
Confidence 888887765 333344566677777764
No 133
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.78 E-value=0.0033 Score=61.87 Aligned_cols=184 Identities=17% Similarity=0.174 Sum_probs=102.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKE 258 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 258 (486)
...+.|+|..|.|||.|++.+.+.......=..+++++ .......++..+.. .....+++.. +
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~~---------~~~~~Fk~~y-~- 175 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALRD---------NEMEKFKEKY-S- 175 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHHh---------hhHHHHHHhh-c-
Confidence 56799999999999999999999987653323455542 33344444433321 2234444444 2
Q ss_pred CcEEEEEeCCCCccc---ccc-ccCCCCCcccccccCCCCCcEEEEEeCchhhhh--------hhcCCcccEEcCCCChH
Q 042728 259 KQLLIILDNIWTKLE---LDK-FGIPTGDVAEKDRKDDQRRCTIILTSRKQDLLR--------IDMNSQKNFQIDALPPK 326 (486)
Q Consensus 259 kr~LlVlDdv~~~~~---~~~-l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~--------~~~~~~~~~~l~~L~~~ 326 (486)
-=++++||++.... |+. +...+.. ....|-.||+|++..+-.- ..+...-.+.+.+.+.+
T Consensus 176 -~dlllIDDiq~l~gk~~~qeefFh~FN~-------l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e 247 (408)
T COG0593 176 -LDLLLIDDIQFLAGKERTQEEFFHTFNA-------LLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDE 247 (408)
T ss_pred -cCeeeechHhHhcCChhHHHHHHHHHHH-------HHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHH
Confidence 23889999985422 221 1111111 0223448999997654221 12344578999999999
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHcCC----ChHHHHHHHHHhc----CCCHHHHHHHHHHHhcC
Q 042728 327 EALQLFEEIVGDSTKISAFQSTANEIVERCGG----LPVALSTVANALK----TKELDFWKDALNQLRRS 388 (486)
Q Consensus 327 e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~G----lPlai~~~~~~L~----~~~~~~w~~~l~~l~~~ 388 (486)
....++.+.+....... ..++..-|++.... +.-|+..+..+-. .-+......++..+...
T Consensus 248 ~r~aiL~kka~~~~~~i-~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 248 TRLAILRKKAEDRGIEI-PDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRA 316 (408)
T ss_pred HHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhcc
Confidence 99999998775322111 12344445544443 3333333333222 12455556666654433
No 134
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.77 E-value=3.7e-05 Score=64.06 Aligned_cols=69 Identities=20% Similarity=0.272 Sum_probs=41.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC-c
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEK-Q 260 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k-r 260 (486)
|.|+|++|+|||++|+.+++.... ..+.++.+...+. ...........+.+...... +
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~----------------~~~~~~~~i~~~~~~~~~~~~~ 59 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELISS----------------YAGDSEQKIRDFFKKAKKSAKP 59 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTS----------------STTHHHHHHHHHHHHHHHTSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccccc----------------cccccccccccccccccccccc
Confidence 579999999999999999998742 2344443321100 01222223333333333233 7
Q ss_pred EEEEEeCCCCc
Q 042728 261 LLIILDNIWTK 271 (486)
Q Consensus 261 ~LlVlDdv~~~ 271 (486)
.+|++||++..
T Consensus 60 ~vl~iDe~d~l 70 (132)
T PF00004_consen 60 CVLFIDEIDKL 70 (132)
T ss_dssp EEEEEETGGGT
T ss_pred eeeeeccchhc
Confidence 99999999754
No 135
>PRK08116 hypothetical protein; Validated
Probab=97.76 E-value=0.00023 Score=67.00 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=60.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEK 259 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (486)
.-+.++|.+|+|||.||..+++....+ ...+++++ ..+++..+........ ..+ ...+.+.+.+ -
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~--~~~----~~~~~~~l~~-~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG--KED----ENEIIRSLVN-A 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc--ccc----HHHHHHHhcC-C
Confidence 358899999999999999999998765 34456664 4445666655443211 111 2233444543 2
Q ss_pred cEEEEEeCCCC--cccccc--ccCCCCCcccccccCCCCCcEEEEEeCch
Q 042728 260 QLLIILDNIWT--KLELDK--FGIPTGDVAEKDRKDDQRRCTIILTSRKQ 305 (486)
Q Consensus 260 r~LlVlDdv~~--~~~~~~--l~~~~~~~~~~~~~~~~~~s~ilvTtR~~ 305 (486)
=||||||+.. ..+|.. +...+. ..-..+..+|+||...
T Consensus 180 -dlLviDDlg~e~~t~~~~~~l~~iin-------~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 -DLLILDDLGAERDTEWAREKVYNIID-------SRYRKGLPTIVTTNLS 221 (268)
T ss_pred -CEEEEecccCCCCCHHHHHHHHHHHH-------HHHHCCCCEEEECCCC
Confidence 3899999953 233432 111110 0122455688888755
No 136
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.74 E-value=0.00031 Score=68.06 Aligned_cols=103 Identities=14% Similarity=0.136 Sum_probs=66.5
Q ss_pred HHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCe-EEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCCH
Q 042728 168 QDVMEALRD-DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDK-VVMAEVTQTP-DHHKIQNKLAFDLGMEFGLNENE 244 (486)
Q Consensus 168 ~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~ 244 (486)
.++++.+.. +.-..+.|+|.+|+|||||++.+++..... +.+. ++|+.+.+.. ++.++.+.+...+..........
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 346666643 233567899999999999999999887654 3344 4677776554 77888888888776543211111
Q ss_pred H-----HHHHHHHHH-HhcCCcEEEEEeCCCCc
Q 042728 245 F-----QRAERLHER-LKKEKQLLIILDNIWTK 271 (486)
Q Consensus 245 ~-----~~~~~l~~~-L~~~kr~LlVlDdv~~~ 271 (486)
. .....+.++ -..+++.+||+|++...
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 1 111222223 23478999999998643
No 137
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.68 E-value=0.0011 Score=62.39 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHH
Q 042728 164 MKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQN 228 (486)
Q Consensus 164 ~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 228 (486)
...++++..++..+. -+.|.|++|+|||+||+.+++... ...+.++.+...+..+++.
T Consensus 8 ~~l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dllg 65 (262)
T TIGR02640 8 KRVTSRALRYLKSGY--PVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLVG 65 (262)
T ss_pred HHHHHHHHHHHhcCC--eEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHhh
Confidence 344556666665543 367999999999999999987431 2345666666666555543
No 138
>PRK10536 hypothetical protein; Provisional
Probab=97.66 E-value=0.00091 Score=61.49 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=43.2
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEE
Q 042728 155 KDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVM 214 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w 214 (486)
.+...+.+|......++.++.+. .++.+.|++|+|||+||..+..+.-..+.|+.++.
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 34456778888888888888664 48999999999999999999886432334554443
No 139
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0013 Score=66.36 Aligned_cols=94 Identities=16% Similarity=0.281 Sum_probs=61.6
Q ss_pred ccccccHHHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHH
Q 042728 157 FEAFDSRMKVFQDVMEALR---D---------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHH 224 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (486)
..++-|-+..+.+|.+++. . ..++=+.++|++|+|||.||+.++.+..+- | ++++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP--f-----~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP--F-----LSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc--e-----Eeecch----
Confidence 4456788888888877763 1 134568899999999999999999887653 3 333322
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 042728 225 KIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 271 (486)
+|+.... ...+..+..+.+.-.+..++++++|+++-.
T Consensus 258 ----eivSGvS------GESEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 ----EIVSGVS------GESEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred ----hhhcccC------cccHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 2222221 122344455555555568999999999743
No 140
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.64 E-value=0.00077 Score=73.11 Aligned_cols=176 Identities=13% Similarity=0.148 Sum_probs=93.4
Q ss_pred cCccccccHHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC
Q 042728 155 KDFEAFDSRMKVFQDVMEALRD-------------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP 221 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 221 (486)
...+.+.|.+..++.|.+++.- ...+-+.++|++|+|||+||+.+++..... | +.++.+
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~--~---i~i~~~--- 246 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY--F---ISINGP--- 246 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--E---EEEecH---
Confidence 3455688999999888877631 234568899999999999999998876321 2 222211
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc-------------cccccCCCCCccccc
Q 042728 222 DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE-------------LDKFGIPTGDVAEKD 288 (486)
Q Consensus 222 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~ 288 (486)
++.. .. ..........+.+......+.+|+||+++.... ...+...+.
T Consensus 247 ---~i~~----~~------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld------ 307 (733)
T TIGR01243 247 ---EIMS----KY------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMD------ 307 (733)
T ss_pred ---HHhc----cc------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhh------
Confidence 1110 00 011122233333333335678999999865310 011111010
Q ss_pred ccCCCCCcEEEE-EeCchh-hhhhhc---CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCh
Q 042728 289 RKDDQRRCTIIL-TSRKQD-LLRIDM---NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLP 360 (486)
Q Consensus 289 ~~~~~~~s~ilv-TtR~~~-v~~~~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 360 (486)
.....+..+++ ||.... +..... .-...+.+...+.++-.+++........... ......+++.+.|..
T Consensus 308 -~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~--d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 308 -GLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE--DVDLDKLAEVTHGFV 381 (733)
T ss_pred -ccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc--ccCHHHHHHhCCCCC
Confidence 00122333444 444332 211011 1234678888888888888886654322111 112466778888864
No 141
>PRK08118 topology modulation protein; Reviewed
Probab=97.61 E-value=3.6e-05 Score=67.02 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=28.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHc-cCCCeEEE
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEE-NLFDKVVM 214 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 214 (486)
+.|.|+|++|+||||||+.+++..... -+|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999887543 45777776
No 142
>PHA00729 NTP-binding motif containing protein
Probab=97.61 E-value=0.0004 Score=62.71 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=29.3
Q ss_pred HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 169 DVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 169 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.+++.+...+...|.|.|.+|+||||||..+.+...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455556566667899999999999999999998763
No 143
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.61 E-value=0.00063 Score=74.37 Aligned_cols=107 Identities=17% Similarity=0.222 Sum_probs=61.7
Q ss_pred ccccccHHHHHHHHHHHhcc-------C--CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALRD-------D--KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQ 227 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 227 (486)
...++|.+..++.+.+.+.. + ...++.++|++|+|||.||+.++...... ....+-++++......
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~~--- 639 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEAH--- 639 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhhh---
Confidence 35678999999998888731 1 23478999999999999999998876432 2223333333221111
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 042728 228 NKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 228 ~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 271 (486)
.+..-+|.++. ..... ....+.+.++.....+|+||++...
T Consensus 640 -~~~~l~g~~~g-yvg~~-~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 640 -TVSRLKGSPPG-YVGYG-EGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred -hhccccCCCCC-ccccc-ccchHHHHHHhCCCcEEEEechhhc
Confidence 11111232222 11111 1123445555456679999999754
No 144
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.60 E-value=0.00014 Score=66.38 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=29.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEe
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEV 217 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v 217 (486)
-.++|+|.+|+|||||+..+....... |.++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~--f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHK--FDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhccc--CCEEEEEec
Confidence 357899999999999999999887654 888877754
No 145
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.59 E-value=0.00091 Score=67.73 Aligned_cols=193 Identities=15% Similarity=0.182 Sum_probs=114.5
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
+++....+++|.+.....|.+.+..+.. +-....|+-|+||||+|+.++..+--.+. .....+..-...+.|
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I 82 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEI 82 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhh
Confidence 4455677889999999999999977643 45678899999999999999977632210 001111111111222
Q ss_pred HHHh-----CCCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCc--cccccccCCCCCcccccccCCCCCcEEE
Q 042728 231 AFDL-----GMEFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTK--LELDKFGIPTGDVAEKDRKDDQRRCTII 299 (486)
Q Consensus 231 ~~~l-----~~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~il 299 (486)
...- -.+.. +...-+..+.|.+... .++.=+.|+|+|+.. ..|+.+...+.. ...+...|
T Consensus 83 ~~g~~~DviEiDaA-Sn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE--------PP~hV~FI 153 (515)
T COG2812 83 NEGSLIDVIEIDAA-SNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE--------PPSHVKFI 153 (515)
T ss_pred hcCCcccchhhhhh-hccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc--------CccCeEEE
Confidence 2110 00000 1111222333333332 234458899999865 456655444433 34455554
Q ss_pred -EEeCchhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChH
Q 042728 300 -LTSRKQDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPV 361 (486)
Q Consensus 300 -vTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl 361 (486)
.||-...+.....+.+..|.+..|+.++-...+...+....-. ..++...-|++..+|...
T Consensus 154 lATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~-~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 154 LATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN-IEEDALSLIARAAEGSLR 215 (515)
T ss_pred EecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCc-cCHHHHHHHHHHcCCChh
Confidence 4555555655456778899999999999999998887643222 224456667777777554
No 146
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.59 E-value=0.0006 Score=60.93 Aligned_cols=89 Identities=22% Similarity=0.259 Sum_probs=59.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ-TPDHHKIQNKLAFDLGMEFG---LNENEFQRAERLHER 254 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 254 (486)
++++.++|+.|+||||.+.+++.....+ -..+..++... .....+-++..++.++.+.. ...+..+......+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4689999999999999999999888765 45577777653 33666778888999887632 233455555444444
Q ss_pred HhcCCcEEEEEeCCC
Q 042728 255 LKKEKQLLIILDNIW 269 (486)
Q Consensus 255 L~~~kr~LlVlDdv~ 269 (486)
+..++.=++++|-.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 443333477788764
No 147
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.0038 Score=60.62 Aligned_cols=92 Identities=15% Similarity=0.243 Sum_probs=57.6
Q ss_pred CCcEEEEEeCCCCc--cccccccCCCCCcccccccCCCCCcEEEEEeCc-hhhhhhhcCCcccEEcCCCChHHHHHHHHH
Q 042728 258 EKQLLIILDNIWTK--LELDKFGIPTGDVAEKDRKDDQRRCTIILTSRK-QDLLRIDMNSQKNFQIDALPPKEALQLFEE 334 (486)
Q Consensus 258 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~ 334 (486)
+++-++|+|+++.. ...+.+...+.. ...++.+|++|.+ ..+.....+....+.+.+++.++..+.+..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEE--------Pp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEE--------PPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcC--------CCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHH
Confidence 34568889999865 334444333333 4446655555544 545443445567899999999999999877
Q ss_pred HhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 335 IVGDSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 335 ~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
. + . +. ...++..++|.|+.+..+
T Consensus 203 ~-~--~--~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 203 Q-G--V--AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred c-C--C--Ch----HHHHHHHcCCCHHHHHHH
Confidence 4 1 1 11 223577899999755443
No 148
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.59 E-value=0.0014 Score=71.24 Aligned_cols=175 Identities=14% Similarity=0.175 Sum_probs=95.7
Q ss_pred ccccccHHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCH
Q 042728 157 FEAFDSRMKVFQDVMEALRD-------------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDH 223 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~ 223 (486)
...+.|.+...+.|.+.+.- ..++-+.++|++|+|||++|+.+++..... | +.++..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~--f-----i~v~~~--- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN--F-----IAVRGP--- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEehH---
Confidence 44567887777777665521 234558899999999999999999876421 2 222211
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc--------------cccccCCCCCcccccc
Q 042728 224 HKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE--------------LDKFGIPTGDVAEKDR 289 (486)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~--------------~~~l~~~~~~~~~~~~ 289 (486)
+++ ... ....+.....+........+.+|+||+++.... ...+...+..
T Consensus 522 -~l~----~~~------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg------ 584 (733)
T TIGR01243 522 -EIL----SKW------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDG------ 584 (733)
T ss_pred -HHh----hcc------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhc------
Confidence 111 110 111122334444444445789999999975311 0111000100
Q ss_pred cCCCCCcEEEEEeCchhhhhhh-c---CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCh
Q 042728 290 KDDQRRCTIILTSRKQDLLRID-M---NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLP 360 (486)
Q Consensus 290 ~~~~~~s~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 360 (486)
.....+.-||.||......... . .-...+.++..+.++-.++|+.+.......+. .....+++.|.|.-
T Consensus 585 ~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~--~~l~~la~~t~g~s 657 (733)
T TIGR01243 585 IQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED--VDLEELAEMTEGYT 657 (733)
T ss_pred ccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc--CCHHHHHHHcCCCC
Confidence 0123345566677555432211 1 23457888889999999999876653222211 11355777777743
No 149
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.0037 Score=60.78 Aligned_cols=165 Identities=12% Similarity=0.119 Sum_probs=96.5
Q ss_pred HHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhHc--------------------cCCCeEEEEEeCCCCCH
Q 042728 165 KVFQDVMEALRDDK-LNIIGVHGMGGVGKTTIVKQVAKQVMEE--------------------NLFDKVVMAEVTQTPDH 223 (486)
Q Consensus 165 ~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~vs~~~~~ 223 (486)
..-++|...+.+++ .+.+.+.|+.|+||+++|..++...--. .|.|.. ++.-...
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~-~i~p~~~--- 84 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYY-TLTPEKG--- 84 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEE-EEecccc---
Confidence 34566777776654 4677899999999999999998776321 122221 1110000
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcE
Q 042728 224 HKIQNKLAFDLGMEFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCT 297 (486)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ 297 (486)
...-. .+.+..+.+.+. .+++=++|+|+++... .-+.+...+.. ...++.
T Consensus 85 ---------------~~~I~-idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE--------Pp~~t~ 140 (334)
T PRK07993 85 ---------------KSSLG-VDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE--------PPENTW 140 (334)
T ss_pred ---------------cccCC-HHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC--------CCCCeE
Confidence 00011 222333444433 1456689999998652 23333222322 334566
Q ss_pred EEEEeCc-hhhhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHH
Q 042728 298 IILTSRK-QDLLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVAL 363 (486)
Q Consensus 298 ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 363 (486)
+|++|.+ ..+.....+....+.+.+++.++..+.+....+ .+ .+.+..++..++|.|...
T Consensus 141 fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~---~~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 141 FFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVT---MS---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred EEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccC---CC---HHHHHHHHHHcCCCHHHH
Confidence 6666655 444433345567899999999999988865421 11 234667899999999644
No 150
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00023 Score=75.02 Aligned_cols=158 Identities=15% Similarity=0.179 Sum_probs=95.7
Q ss_pred CccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCC-----eEEEEEeCCCCCHHHHHHHH
Q 042728 156 DFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFD-----KVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-----~~~wv~vs~~~~~~~~~~~i 230 (486)
..++++||++++.+.++.|....-.--.++|.+|+|||+++.-++......+-.. .++-+. +
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD------~------- 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD------L------- 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec------H-------
Confidence 3678999999999999999654333446899999999999999998875442221 111111 1
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc--------cc--cccCCCCCcccccccCCCCCcEEEE
Q 042728 231 AFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE--------LD--KFGIPTGDVAEKDRKDDQRRCTIIL 300 (486)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~--------~~--~l~~~~~~~~~~~~~~~~~~s~ilv 300 (486)
..+-.........+++...+.+.+...++.+|++|.++.... .+ .+..|.-. .+.--.|=.
T Consensus 235 -g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA--------RGeL~~IGA 305 (786)
T COG0542 235 -GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA--------RGELRCIGA 305 (786)
T ss_pred -HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh--------cCCeEEEEe
Confidence 111111112345566777777777765689999999986521 11 11111100 122223455
Q ss_pred EeCchhhhh-----hhcCCcccEEcCCCChHHHHHHHHHH
Q 042728 301 TSRKQDLLR-----IDMNSQKNFQIDALPPKEALQLFEEI 335 (486)
Q Consensus 301 TtR~~~v~~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~ 335 (486)
||-++.--. ........+.+..-+.+++..+++-.
T Consensus 306 TT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 306 TTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred ccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 665543200 02345678999999999999998754
No 151
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0031 Score=62.71 Aligned_cols=166 Identities=15% Similarity=0.239 Sum_probs=97.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKK 257 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (486)
....+.+.|++|+|||+||..++..- .|..+--++...- . ..+.......+.+.+..
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiSpe~m------i-------------G~sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS----DFPFVKIISPEDM------I-------------GLSESAKCAHIKKIFED 593 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc----CCCeEEEeChHHc------c-------------CccHHHHHHHHHHHHHH
Confidence 45567899999999999999998653 4765544322111 0 22333344444444432
Q ss_pred ---CCcEEEEEeCCCCccccccccCCCCCccc-----ccccCCCCCcEE--EEEeCchhhhhhhcC----CcccEEcCCC
Q 042728 258 ---EKQLLIILDNIWTKLELDKFGIPTGDVAE-----KDRKDDQRRCTI--ILTSRKQDLLRIDMN----SQKNFQIDAL 323 (486)
Q Consensus 258 ---~kr~LlVlDdv~~~~~~~~l~~~~~~~~~-----~~~~~~~~~s~i--lvTtR~~~v~~~~~~----~~~~~~l~~L 323 (486)
..--.||+||+....+|-.++..+....+ .+......|-|+ +-||....+.. .|+ -...|.++.+
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~-~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ-EMGILDCFSSTIHVPNL 672 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH-HcCHHHhhhheeecCcc
Confidence 34468999999999889888776655222 222334444454 44666666654 343 2246899999
Q ss_pred Ch-HHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhc
Q 042728 324 PP-KEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANALK 371 (486)
Q Consensus 324 ~~-~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~ 371 (486)
+. ++..+.++..- .-.+...+.++++...+| +-..|+.+..++.
T Consensus 673 ~~~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~--~~vgIKklL~lie 717 (744)
T KOG0741|consen 673 TTGEQLLEVLEELN--IFSDDEVRAIAEQLLSKK--VNVGIKKLLMLIE 717 (744)
T ss_pred CchHHHHHHHHHcc--CCCcchhHHHHHHHhccc--cchhHHHHHHHHH
Confidence 87 77777776632 112334455666666666 3334555544443
No 152
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.53 E-value=0.00071 Score=73.21 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=61.0
Q ss_pred cccccHHHHHHHHHHHhcc-------C--CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHH
Q 042728 158 EAFDSRMKVFQDVMEALRD-------D--KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQN 228 (486)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 228 (486)
..++|.+..++.+.+.+.. + ...++.++|++|+|||+||+.+++.. +...+.++.+.......
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhccc---
Confidence 3467888888888877742 1 23467899999999999999999876 23345555544322111
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 042728 229 KLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 271 (486)
+...++.+.. .... +....+.+.+.....-+++||+++..
T Consensus 526 -~~~lig~~~g-yvg~-~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 -VSRLIGAPPG-YVGF-EQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred -HHHHhcCCCC-Cccc-chhhHHHHHHHhCCCeEEEEechhhc
Confidence 1122232221 1111 11223445555444569999999865
No 153
>PTZ00494 tuzin-like protein; Provisional
Probab=97.53 E-value=0.022 Score=56.05 Aligned_cols=161 Identities=13% Similarity=0.101 Sum_probs=97.9
Q ss_pred ccccccHHHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALRD---DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFD 233 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 233 (486)
...++.|+.+-..+...|.+ ..++++++.|.-|+|||+|.+........ ..++|.+.... +-++.+.+.
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~E---DtLrsVVKA 441 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTE---DTLRSVVRA 441 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCc---chHHHHHHH
Confidence 55688998887777777644 47899999999999999999988866543 36778877654 346788888
Q ss_pred hCCCCCCCCCHHHHHHHHHHHHh------cCCcEEEEEe--CCCCcc-ccccccCCCCCcccccccCCCCCcEEEEEeCc
Q 042728 234 LGMEFGLNENEFQRAERLHERLK------KEKQLLIILD--NIWTKL-ELDKFGIPTGDVAEKDRKDDQRRCTIILTSRK 304 (486)
Q Consensus 234 l~~~~~~~~~~~~~~~~l~~~L~------~~kr~LlVlD--dv~~~~-~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~ 304 (486)
|+.+.-. .-.+.+..+.+... +++.-+||+- +=.+.. .+++. ..+.. ...-|.|++---.
T Consensus 442 LgV~nve--~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLac--------DrRlCHvv~EVpl 510 (664)
T PTZ00494 442 LGVSNVE--VCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVS--------DCQACHIVLAVPM 510 (664)
T ss_pred hCCCChh--hhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHc--------cchhheeeeechH
Confidence 8876431 11122222222211 2344455542 221111 12221 11222 4556777776554
Q ss_pred hhhh--hhhcCCcccEEcCCCChHHHHHHHHHHh
Q 042728 305 QDLL--RIDMNSQKNFQIDALPPKEALQLFEEIV 336 (486)
Q Consensus 305 ~~v~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 336 (486)
+... ......-..|.+++|+.+++.++..+..
T Consensus 511 ESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 511 KALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 4432 1123344678999999999999887654
No 154
>PRK08181 transposase; Validated
Probab=97.52 E-value=0.00039 Score=65.21 Aligned_cols=80 Identities=19% Similarity=0.146 Sum_probs=49.6
Q ss_pred HHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Q 042728 171 MEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAER 250 (486)
Q Consensus 171 ~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 250 (486)
.+|+.. ...+.++|++|+|||.||..+.+....+ ...++|++ ..+++..+..... ..+.. .
T Consensus 100 ~~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~~-----~~~~~----~ 160 (269)
T PRK08181 100 DSWLAK--GANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVARR-----ELQLE----S 160 (269)
T ss_pred HHHHhc--CceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHHh-----CCcHH----H
Confidence 356543 3458999999999999999999887654 33455654 3455555543321 11122 2
Q ss_pred HHHHHhcCCcEEEEEeCCCCc
Q 042728 251 LHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 251 l~~~L~~~kr~LlVlDdv~~~ 271 (486)
+.+.+. +.-||||||+...
T Consensus 161 ~l~~l~--~~dLLIIDDlg~~ 179 (269)
T PRK08181 161 AIAKLD--KFDLLILDDLAYV 179 (269)
T ss_pred HHHHHh--cCCEEEEeccccc
Confidence 333443 3469999999643
No 155
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.51 E-value=0.00065 Score=70.46 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=42.1
Q ss_pred ccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 154 VKDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
+...+.++|.+..++.+...+......-+.|+|++|+|||++|+.+++...
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 344567899999999998887666666788999999999999999987643
No 156
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0042 Score=63.99 Aligned_cols=166 Identities=17% Similarity=0.181 Sum_probs=94.6
Q ss_pred ccccccHHHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALR------DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
.++-+|.++..++|++++. +-+-+++..+|++|+|||++++.++..+..+ | +-++++.-.+..++-..=
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhcccc
Confidence 4566899999999999883 2355899999999999999999999888655 3 345666666665543211
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHhc--CCcEEEEEeCCCCcc---------ccccccCCCC--CcccccccCCCCCcE
Q 042728 231 AFDLGMEFGLNENEFQRAERLHERLKK--EKQLLIILDNIWTKL---------ELDKFGIPTG--DVAEKDRKDDQRRCT 297 (486)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~L~~--~kr~LlVlDdv~~~~---------~~~~l~~~~~--~~~~~~~~~~~~~s~ 297 (486)
-..+| ..-.++.++|+. -..-|+.+|.|+..- .+-++..|-. .|......-.-.=|+
T Consensus 485 RTYVG----------AMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 485 RTYVG----------AMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred eeeec----------cCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhh
Confidence 11111 111244445542 234688899987541 1111111100 011000000112255
Q ss_pred EEEEeCchh---hhhhhcCCcccEEcCCCChHHHHHHHHHHhC
Q 042728 298 IILTSRKQD---LLRIDMNSQKNFQIDALPPKEALQLFEEIVG 337 (486)
Q Consensus 298 ilvTtR~~~---v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 337 (486)
|+....-.. +..-.......|+|.+-..+|-..+-.+++-
T Consensus 555 VLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred eEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhh
Confidence 544222221 1111334557899999999998888777653
No 157
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.50 E-value=0.00051 Score=62.34 Aligned_cols=88 Identities=17% Similarity=0.157 Sum_probs=55.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHh-C---CC--CCCCCCHHH---HHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDL-G---ME--FGLNENEFQ---RAE 249 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l-~---~~--~~~~~~~~~---~~~ 249 (486)
-.++.|+|++|+|||+++.+++...... ...++|++... ++...+.+ +++.. . .. .....+..+ ...
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 4689999999999999999998776543 46789999876 66555443 32221 0 00 001122222 345
Q ss_pred HHHHHHhcCCcEEEEEeCCCC
Q 042728 250 RLHERLKKEKQLLIILDNIWT 270 (486)
Q Consensus 250 ~l~~~L~~~kr~LlVlDdv~~ 270 (486)
.+.+.+...+.-+||+|.+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHH
Confidence 555555544566899999853
No 158
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.50 E-value=0.0011 Score=59.98 Aligned_cols=181 Identities=15% Similarity=0.216 Sum_probs=101.0
Q ss_pred CccccccHHHHHHH---HHHHhccC------CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHH
Q 042728 156 DFEAFDSRMKVFQD---VMEALRDD------KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKI 226 (486)
Q Consensus 156 ~~~~~~gR~~~~~~---l~~~L~~~------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~ 226 (486)
..++++|.++...+ |++.|.++ .++.|..+|++|.|||.+|+.+++...+. | +.+. ..++
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vk----at~l 187 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVK----ATEL 187 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEec----hHHH
Confidence 35678898877654 56777553 57889999999999999999999887543 2 1111 1111
Q ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc---cccccccCCCCC-----cccccccCCCCCcEE
Q 042728 227 QNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTK---LELDKFGIPTGD-----VAEKDRKDDQRRCTI 298 (486)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~---~~~~~l~~~~~~-----~~~~~~~~~~~~s~i 298 (486)
+ -+..| +-...+..+.+.-..--+|++++|.++.. ..++.+..-... +-.......+.|...
T Consensus 188 i---GehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 188 I---GEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred H---HHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 1 11111 12234455555555557899999998743 111111110000 000111124556656
Q ss_pred EEEeCchhhhhhhcC--CcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCC
Q 042728 299 ILTSRKQDLLRIDMN--SQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGL 359 (486)
Q Consensus 299 lvTtR~~~v~~~~~~--~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl 359 (486)
|..|.+......... -...|+...-+.+|-.+++..++..-..+-+ .-.+.++++++|+
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~--~~~~~~~~~t~g~ 318 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD--ADLRYLAAKTKGM 318 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc--cCHHHHHHHhCCC
Confidence 666666554321221 2245777777888888998888753221111 1245677777774
No 159
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.49 E-value=0.0005 Score=65.84 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=59.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG-----LNENEFQRAERLH 252 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 252 (486)
.-+++-|+|++|+||||||.+++...... -..++|++....++.. .+++++.+.. .+.+.++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34689999999999999999988776544 4567899877666553 3555554321 2345555565555
Q ss_pred HHHhcCCcEEEEEeCCCCc
Q 042728 253 ERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 253 ~~L~~~kr~LlVlDdv~~~ 271 (486)
..+..+..-++|+|.+-..
T Consensus 127 ~li~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAAL 145 (321)
T ss_pred HHhhccCCcEEEEcchhhh
Confidence 5555556779999998643
No 160
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.49 E-value=0.0054 Score=57.75 Aligned_cols=171 Identities=16% Similarity=0.207 Sum_probs=104.6
Q ss_pred ccccccHHHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCH-HHHHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALRD----DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDH-HKIQNKLA 231 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~-~~~~~~i~ 231 (486)
..+++|-.++...+-.++.+ +....+.|+|+.|.|||+|......+. +..-+..+-|.+....-. .-.++.|.
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~--q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI--QENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH--HhcCCeEEEEEECccchhhHHHHHHHH
Confidence 34678888888888887743 455678899999999999999888872 212234455555544422 23455555
Q ss_pred HHhCC----CCCCCCCHHHHHHHHHHHHhc-----CCcEEEEEeCCCCccc-------cccccCCCCCcccccccCCCCC
Q 042728 232 FDLGM----EFGLNENEFQRAERLHERLKK-----EKQLLIILDNIWTKLE-------LDKFGIPTGDVAEKDRKDDQRR 295 (486)
Q Consensus 232 ~~l~~----~~~~~~~~~~~~~~l~~~L~~-----~kr~LlVlDdv~~~~~-------~~~l~~~~~~~~~~~~~~~~~~ 295 (486)
.|+.. ......+..+....+...|+. +-+++.|+|.++-... ++-+...-. ...+-
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs--------~r~Pi 172 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQS--------ARAPI 172 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhh--------cCCCe
Confidence 55532 222233444556667777764 2357888888764311 111111111 14556
Q ss_pred cEEEEEeCchhhhh------hhcCCcccEEcCCCChHHHHHHHHHHhC
Q 042728 296 CTIILTSRKQDLLR------IDMNSQKNFQIDALPPKEALQLFEEIVG 337 (486)
Q Consensus 296 s~ilvTtR~~~v~~------~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 337 (486)
|-|-+|||-..... ...+...++-++.++-++..+++++.+.
T Consensus 173 ciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 173 CIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred EEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 77889999875321 1123334566788999999999998774
No 161
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.48 E-value=0.0017 Score=59.38 Aligned_cols=230 Identities=9% Similarity=0.104 Sum_probs=129.1
Q ss_pred ccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHcc----CCCeEEEEEeCCC----------C-
Q 042728 157 FEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEEN----LFDKVVMAEVTQT----------P- 221 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~vs~~----------~- 221 (486)
...+.++++....|......++.+-..++|++|.||-|.+..+.++.-..+ .-+..-|.+-|.. .
T Consensus 12 l~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 12 LDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred hhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccce
Confidence 445778888888888877667788899999999999999998888764311 1234445433322 1
Q ss_pred ----------CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcE-EEEEeCCCCc--cccccccCCCCCccccc
Q 042728 222 ----------DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQL-LIILDNIWTK--LELDKFGIPTGDVAEKD 288 (486)
Q Consensus 222 ----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~-LlVlDdv~~~--~~~~~l~~~~~~~~~~~ 288 (486)
.-.-+.++|++......+ + .....++| ++|+-.+++. +.-..+......
T Consensus 92 lEitPSDaG~~DRvViQellKevAQt~q-----------i--e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk----- 153 (351)
T KOG2035|consen 92 LEITPSDAGNYDRVVIQELLKEVAQTQQ-----------I--ETQGQRPFKVVVINEADELTRDAQHALRRTMEK----- 153 (351)
T ss_pred EEeChhhcCcccHHHHHHHHHHHHhhcc-----------h--hhccccceEEEEEechHhhhHHHHHHHHHHHHH-----
Confidence 112233344433321111 0 00112344 5555555543 111112111111
Q ss_pred ccCCCCCcEEEEEeCchh--hhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 289 RKDDQRRCTIILTSRKQD--LLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 289 ~~~~~~~s~ilvTtR~~~--v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
-...+|+|+...+.. +.. .-+..-.++++..+++|....+++.+....-.-. .+++.+|+++++|+---.-.+
T Consensus 154 ---Ys~~~RlIl~cns~SriIep-IrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp-~~~l~rIa~kS~~nLRrAllm 228 (351)
T KOG2035|consen 154 ---YSSNCRLILVCNSTSRIIEP-IRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP-KELLKRIAEKSNRNLRRALLM 228 (351)
T ss_pred ---HhcCceEEEEecCcccchhH-HhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc-HHHHHHHHHHhcccHHHHHHH
Confidence 234677766443322 121 2334557899999999999999988764332222 678999999999976544444
Q ss_pred HHHhc-C----------CCHHHHHHHHHHHhcCchhhhccchhhhHHHHHHhHhcC
Q 042728 367 ANALK-T----------KELDFWKDALNQLRRSDAREIHGMQANVYTSIKLSYDFL 411 (486)
Q Consensus 367 ~~~L~-~----------~~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L 411 (486)
.-.++ + -...+|+-+..++......+ ..+..+..+-..-|+-|
T Consensus 229 lE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~e--Qs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 229 LEAVRVNNEPFTANSQVIPKPDWEIYIQEIARVILKE--QSPAKLLEVRGRLYELL 282 (351)
T ss_pred HHHHHhccccccccCCCCCCccHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHH
Confidence 44443 1 13558998888765443321 22344444444445444
No 162
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0025 Score=65.15 Aligned_cols=174 Identities=13% Similarity=0.158 Sum_probs=92.3
Q ss_pred ccccccHHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCH
Q 042728 157 FEAFDSRMKVFQDVMEALRD-------------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDH 223 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~ 223 (486)
.+++-|-++...+|.+.+.- ..++-|..+|++|+|||++|+.+++..... | ++++..
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkgp--- 502 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKGP--- 502 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccCH---
Confidence 44455677666666655421 356778999999999999999999887543 3 333222
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc-------------cccccCCCCCccccccc
Q 042728 224 HKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE-------------LDKFGIPTGDVAEKDRK 290 (486)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~~~ 290 (486)
+++.... ..+ +..+..+...-++-.+++++||.++.... +..+..-... .
T Consensus 503 -EL~sk~v---------GeS-Er~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG------~ 565 (693)
T KOG0730|consen 503 -ELFSKYV---------GES-ERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDG------L 565 (693)
T ss_pred -HHHHHhc---------Cch-HHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccc------c
Confidence 1111110 112 22333333333334679999999875411 1111111100 0
Q ss_pred CCCCCcEEEE-EeCchhhhhhhcC---CcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCC
Q 042728 291 DDQRRCTIIL-TSRKQDLLRIDMN---SQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGL 359 (486)
Q Consensus 291 ~~~~~s~ilv-TtR~~~v~~~~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl 359 (486)
...++.-||- |.|...+-...+. ....+.+++=+.+.-.++|+.++....-.+. -...+|++++.|.
T Consensus 566 e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~--vdl~~La~~T~g~ 636 (693)
T KOG0730|consen 566 EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSED--VDLEELAQATEGY 636 (693)
T ss_pred cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcc--ccHHHHHHHhccC
Confidence 0122333333 4444444332343 3456777777778888899998875332222 1234455555554
No 163
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.43 E-value=0.0021 Score=70.74 Aligned_cols=107 Identities=20% Similarity=0.302 Sum_probs=63.1
Q ss_pred ccccccHHHHHHHHHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALRDD---------KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQ 227 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 227 (486)
...++|.+..++.+.+.+... ...++.++|++|+|||++|+.+....... ....+.++.+.......+
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~~- 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHSV- 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccchH-
Confidence 346889999999998888431 13568899999999999999999876432 233455555543221111
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 042728 228 NKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 228 ~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 271 (486)
..-++.++. ....+ ....+.+.+......+|+||++...
T Consensus 641 ---~~l~g~~~g-~~g~~-~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 641 ---ARLIGAPPG-YVGYE-EGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred ---HHhcCCCCC-ccCcc-cccHHHHHHHcCCCcEEEEeccccC
Confidence 111232221 11111 0123444444334459999999865
No 164
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.43 E-value=0.00063 Score=65.20 Aligned_cols=85 Identities=20% Similarity=0.210 Sum_probs=59.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG-----LNENEFQRAERLHE 253 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 253 (486)
-+++-|+|++|+||||||.+++...... -..++|++....+++. .+++++.+.+ .+.+.++....+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 4688899999999999999988776543 4578899887766653 3445544321 23455556665655
Q ss_pred HHhcCCcEEEEEeCCCC
Q 042728 254 RLKKEKQLLIILDNIWT 270 (486)
Q Consensus 254 ~L~~~kr~LlVlDdv~~ 270 (486)
.+..+..-++|+|.+-.
T Consensus 128 li~s~~~~lIVIDSvaa 144 (325)
T cd00983 128 LVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHhccCCCEEEEcchHh
Confidence 55555677999999854
No 165
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.43 E-value=0.012 Score=57.42 Aligned_cols=43 Identities=21% Similarity=0.413 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 164 MKVFQDVMEALRD---DKLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 164 ~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
+...+.|.+.+.+ ....+|+|.|.=|+||||+.+.+.+.....
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4455667777754 467899999999999999999999888765
No 166
>PRK09354 recA recombinase A; Provisional
Probab=97.42 E-value=0.00076 Score=65.19 Aligned_cols=86 Identities=17% Similarity=0.190 Sum_probs=61.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG-----LNENEFQRAERLHE 253 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 253 (486)
-+++-|+|++|+|||||+.+++...... -..++|++....++.. .+++++.+.. .+.+.++....+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4688899999999999999998776544 4678899888777752 4555554321 23455666666655
Q ss_pred HHhcCCcEEEEEeCCCCc
Q 042728 254 RLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 254 ~L~~~kr~LlVlDdv~~~ 271 (486)
.+..++.-++|+|.+-..
T Consensus 133 li~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 133 LVRSGAVDLIVVDSVAAL 150 (349)
T ss_pred HhhcCCCCEEEEeChhhh
Confidence 555556779999998643
No 167
>PRK12377 putative replication protein; Provisional
Probab=97.41 E-value=0.0017 Score=60.12 Aligned_cols=74 Identities=19% Similarity=0.307 Sum_probs=48.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKE 258 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 258 (486)
...+.++|++|+|||+||..+++....+ ...++++++. +++..+-..... ... ...+.+.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~----~~~----~~~~l~~l~-- 162 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDN----GQS----GEKFLQELC-- 162 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhc----cch----HHHHHHHhc--
Confidence 4578999999999999999999998754 3345666543 455555444321 111 123344444
Q ss_pred CcEEEEEeCCCC
Q 042728 259 KQLLIILDNIWT 270 (486)
Q Consensus 259 kr~LlVlDdv~~ 270 (486)
+.-||||||+..
T Consensus 163 ~~dLLiIDDlg~ 174 (248)
T PRK12377 163 KVDLLVLDEIGI 174 (248)
T ss_pred CCCEEEEcCCCC
Confidence 457999999953
No 168
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.40 E-value=0.0054 Score=59.14 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=25.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
..+..+.|+|++|+|||.+|+.+++....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 45678999999999999999999998754
No 169
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0029 Score=66.47 Aligned_cols=179 Identities=14% Similarity=0.146 Sum_probs=105.5
Q ss_pred ccccccHHH---HHHHHHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHH
Q 042728 157 FEAFDSRMK---VFQDVMEALRDD---------KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHH 224 (486)
Q Consensus 157 ~~~~~gR~~---~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (486)
..++.|-++ ++.++++.|.++ -++=+.++|++|+|||-||+.++-...+. |+++|..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS---- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS---- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH----
Confidence 345667655 455566666553 24558899999999999999999776543 3454433
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc-----------------cccccCCCCCcccc
Q 042728 225 KIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE-----------------LDKFGIPTGDVAEK 287 (486)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~-----------------~~~l~~~~~~~~~~ 287 (486)
+ .++.+.. .. ..+...+....+...++++.+|+++.... ++++..-...
T Consensus 379 E----FvE~~~g-----~~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg---- 444 (774)
T KOG0731|consen 379 E----FVEMFVG-----VG-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG---- 444 (774)
T ss_pred H----HHHHhcc-----cc-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC----
Confidence 1 1111110 01 33455555555556789999999874411 2222111110
Q ss_pred cccCCCCCcEEEEEeCchhhhhhh-c---CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHH
Q 042728 288 DRKDDQRRCTIILTSRKQDLLRID-M---NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVAL 363 (486)
Q Consensus 288 ~~~~~~~~s~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 363 (486)
.....+.-+|-+|...++.... + .-...+.++.=+.....++|.-++.......+..++.+ |+..+.|.+=|.
T Consensus 445 --f~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 445 --FETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred --CcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 0122344455566655543211 1 22356888888888899999998875444445556666 888998887654
No 170
>PRK04132 replication factor C small subunit; Provisional
Probab=97.38 E-value=0.0044 Score=66.88 Aligned_cols=160 Identities=11% Similarity=0.051 Sum_probs=96.4
Q ss_pred EEc--CCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcE
Q 042728 184 VHG--MGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQL 261 (486)
Q Consensus 184 I~G--~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~ 261 (486)
+.| |.++||||+|..++++.-..+.-..++-++.|.......+- +++..+....+ +.+.+.-
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~---------------~~~~~~K 632 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIR-EKVKEFARTKP---------------IGGASFK 632 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC---------------cCCCCCE
Confidence 346 88999999999999887433212346777777765554333 33332211100 0112457
Q ss_pred EEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEEEeCch-hhhhhhcCCcccEEcCCCChHHHHHHHHHHhCC
Q 042728 262 LIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQ-DLLRIDMNSQKNFQIDALPPKEALQLFEEIVGD 338 (486)
Q Consensus 262 LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 338 (486)
++|+|+++... ..+.+...... ....+++|+++.+. .+.....+.+..+++.+++.++....+...+..
T Consensus 633 VvIIDEaD~Lt~~AQnALLk~lEe--------p~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~ 704 (846)
T PRK04132 633 IIFLDEADALTQDAQQALRRTMEM--------FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAEN 704 (846)
T ss_pred EEEEECcccCCHHHHHHHHHHhhC--------CCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHh
Confidence 99999999763 33333222221 23456666655554 333323455678999999999999888876643
Q ss_pred CCCCCchHHHHHHHHHHcCCChHHHHHHHH
Q 042728 339 STKISAFQSTANEIVERCGGLPVALSTVAN 368 (486)
Q Consensus 339 ~~~~~~~~~~~~~i~~~~~GlPlai~~~~~ 368 (486)
.... -..+....|++.|+|.+..+..+..
T Consensus 705 Egi~-i~~e~L~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 705 EGLE-LTEEGLQAILYIAEGDMRRAINILQ 733 (846)
T ss_pred cCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2211 1245788999999998865444433
No 171
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.38 E-value=0.0013 Score=60.45 Aligned_cols=91 Identities=23% Similarity=0.247 Sum_probs=56.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHcc----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---------CCCCCHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEEN----LFDKVVMAEVTQTPDHHKIQNKLAFDLGMEF---------GLNENEF 245 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------~~~~~~~ 245 (486)
-.++.|+|++|+|||+|+.+++....... .-..++|++....++...+. .+....+... ....+.+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNGE 97 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCHH
Confidence 46899999999999999999987654321 11568899887776665443 3333322111 0123445
Q ss_pred HHHHHHHHHHh---cCCcEEEEEeCCCC
Q 042728 246 QRAERLHERLK---KEKQLLIILDNIWT 270 (486)
Q Consensus 246 ~~~~~l~~~L~---~~kr~LlVlDdv~~ 270 (486)
+....+..... ..+.-|+|+|.+..
T Consensus 98 ~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 98 QQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred HHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 55544444433 34556999999864
No 172
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.38 E-value=0.002 Score=62.78 Aligned_cols=141 Identities=14% Similarity=0.093 Sum_probs=81.8
Q ss_pred cccHHHHHHHHHHHhc-cCCccE-EEEEcCCCCcHHHHHHHHHHHHhHcc-------------------CCCeEEEEEeC
Q 042728 160 FDSRMKVFQDVMEALR-DDKLNI-IGVHGMGGVGKTTIVKQVAKQVMEEN-------------------LFDKVVMAEVT 218 (486)
Q Consensus 160 ~~gR~~~~~~l~~~L~-~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~vs 218 (486)
++|-+.....+..+.. .++.+. +.++|++|+||||+|..+++...... ....+..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 5666777778877776 333444 99999999999999999998875332 11234444444
Q ss_pred CCCC---HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCC
Q 042728 219 QTPD---HHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQ 293 (486)
Q Consensus 219 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~ 293 (486)
.... ..+..+++.+....... .++.-++++|+++... .-+.+...... ..
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEe--------p~ 137 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEE--------PP 137 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhcc--------CC
Confidence 4433 23344444443332211 1456799999998652 22222222222 44
Q ss_pred CCcEEEEEeCch-hhhhhhcCCcccEEcCCCCh
Q 042728 294 RRCTIILTSRKQ-DLLRIDMNSQKNFQIDALPP 325 (486)
Q Consensus 294 ~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~ 325 (486)
..+.+|++|... .+.....+....+++.+.+.
T Consensus 138 ~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 138 KNTRFILITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred CCeEEEEEcCChhhccchhhhcceeeecCCchH
Confidence 567777777643 33322334556677777333
No 173
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.0015 Score=61.03 Aligned_cols=82 Identities=23% Similarity=0.282 Sum_probs=54.0
Q ss_pred HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHH
Q 042728 169 DVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRA 248 (486)
Q Consensus 169 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 248 (486)
.+.+++. +..-+.++|.+|+|||.||..+.+... +. --.+.++ +..+++..+...... ....
T Consensus 97 ~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~-g~sv~f~------~~~el~~~Lk~~~~~--------~~~~ 158 (254)
T COG1484 97 SLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KA-GISVLFI------TAPDLLSKLKAAFDE--------GRLE 158 (254)
T ss_pred HHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-Hc-CCeEEEE------EHHHHHHHHHHHHhc--------CchH
Confidence 3444555 456689999999999999999999998 42 2344555 345666666665442 1223
Q ss_pred HHHHHHHhcCCcEEEEEeCCCC
Q 042728 249 ERLHERLKKEKQLLIILDNIWT 270 (486)
Q Consensus 249 ~~l~~~L~~~kr~LlVlDdv~~ 270 (486)
..|.+.+. +-=||||||+-.
T Consensus 159 ~~l~~~l~--~~dlLIiDDlG~ 178 (254)
T COG1484 159 EKLLRELK--KVDLLIIDDIGY 178 (254)
T ss_pred HHHHHHhh--cCCEEEEecccC
Confidence 34445444 345999999964
No 174
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.37 E-value=0.00092 Score=61.91 Aligned_cols=91 Identities=24% Similarity=0.218 Sum_probs=57.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccC----CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCCCHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENL----FDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG---------LNENEF 245 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 245 (486)
-.++.|+|++|+|||+|+.+++........ ...++|++....++...+. ++++..+.... ...+..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCHH
Confidence 468999999999999999999865432211 3578999988877665443 34444332211 011222
Q ss_pred ---HHHHHHHHHHhcC-CcEEEEEeCCCC
Q 042728 246 ---QRAERLHERLKKE-KQLLIILDNIWT 270 (486)
Q Consensus 246 ---~~~~~l~~~L~~~-kr~LlVlDdv~~ 270 (486)
.....+.+.+... +.-|||+|.+..
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 2334455555555 678999999854
No 175
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.33 E-value=0.002 Score=70.76 Aligned_cols=107 Identities=20% Similarity=0.263 Sum_probs=60.9
Q ss_pred ccccccHHHHHHHHHHHhcc-------CC--ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALRD-------DK--LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQ 227 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~-------~~--~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 227 (486)
...++|.+..++.+...+.. ++ ..++.++|+.|+|||++|+.+++..... -...+.++.+......
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~~~--- 641 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFMEKH--- 641 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhhhh---
Confidence 34578999998888887742 11 2468899999999999999999776432 2234445444322111
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 042728 228 NKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 228 ~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 271 (486)
.+..-+|.++. ....+. ...+.+.+.....-+|+||++...
T Consensus 642 -~~~~LiG~~pg-y~g~~~-~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 642 -SVSRLVGAPPG-YVGYEE-GGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred -hHHHHhCCCCc-ccccch-hHHHHHHHHhCCCCeEEEeehhhC
Confidence 11112232222 111111 122344444333469999999854
No 176
>PRK04296 thymidine kinase; Provisional
Probab=97.29 E-value=0.00043 Score=61.75 Aligned_cols=111 Identities=18% Similarity=0.107 Sum_probs=63.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCHHHHHHHHHHHHhc
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGL--NENEFQRAERLHERLKK 257 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~L~~ 257 (486)
.++.|+|+.|.||||++..++.+.... -..++.+. +.++.......+++.++..... .....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 467899999999999999999887654 23344442 2112222233455666543321 1233444444444 33
Q ss_pred CCcEEEEEeCCCCc--cccccccCCCCCcccccccCCCCCcEEEEEeCchh
Q 042728 258 EKQLLIILDNIWTK--LELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQD 306 (486)
Q Consensus 258 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 306 (486)
++.-+||+|.+... ++...+...+ ...|..||+|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l----------~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL----------DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH----------HHcCCeEEEEecCcc
Confidence 34458999999643 1122221111 445788999998854
No 177
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.29 E-value=0.0022 Score=68.92 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=60.3
Q ss_pred cccccHHHHHHHHHHHhcc---------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHH
Q 042728 158 EAFDSRMKVFQDVMEALRD---------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQN 228 (486)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 228 (486)
..++|.++.++.|.+.+.. .....+.++|++|+|||++|+.++.... ...+.++.+......
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~-----~~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC-----CCcEEeechhhcccc----
Confidence 3468888888888887741 1235688999999999999999988763 123344444332211
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 042728 229 KLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 271 (486)
.+..-+|.+.. .... .....+.+.+......+|+||+++..
T Consensus 529 ~~~~LiG~~~g-yvg~-~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 529 TVSRLIGAPPG-YVGF-DQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred cHHHHcCCCCC-cccc-cccchHHHHHHhCCCcEEEeccHhhh
Confidence 11222233221 1110 11123344444444579999999865
No 178
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.012 Score=62.50 Aligned_cols=106 Identities=20% Similarity=0.292 Sum_probs=66.6
Q ss_pred ccccccHHHHHHHHHHHhcc-------C--CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALRD-------D--KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQ 227 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 227 (486)
...++|.+..+..+.+.+.. + ...+...+|+.|+|||.||+.++..+-.. =+..+-++.|......
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DMSEy~EkH--- 564 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD--EQALIRIDMSEYMEKH--- 564 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC--CccceeechHHHHHHH---
Confidence 34678999999999888732 2 34567789999999999999999887321 1344555444332221
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcE-EEEEeCCCCc
Q 042728 228 NKLAFDLGMEFGLNENEFQRAERLHERLKKEKQL-LIILDNIWTK 271 (486)
Q Consensus 228 ~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~-LlVlDdv~~~ 271 (486)
.+.+-+|.++. -...++ ...|.+..++ ++| +|.||++...
T Consensus 565 -sVSrLIGaPPG-YVGyee-GG~LTEaVRr-~PySViLlDEIEKA 605 (786)
T COG0542 565 -SVSRLIGAPPG-YVGYEE-GGQLTEAVRR-KPYSVILLDEIEKA 605 (786)
T ss_pred -HHHHHhCCCCC-Cceecc-ccchhHhhhc-CCCeEEEechhhhc
Confidence 22223344433 222222 4456666664 666 8889999865
No 179
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.25 E-value=0.003 Score=54.39 Aligned_cols=40 Identities=33% Similarity=0.428 Sum_probs=31.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCC
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPD 222 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~ 222 (486)
++.|+|++|+||||++..+....... -..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcchH
Confidence 36899999999999999999887552 45678888766543
No 180
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.25 E-value=0.016 Score=58.23 Aligned_cols=88 Identities=27% Similarity=0.328 Sum_probs=53.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCC---CCCHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT-PDHHKIQNKLAFDLGMEFGL---NENEFQRAERLHE 253 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 253 (486)
.+.+|.++|.+|+||||++..++.....++ + .+..++.... +...+.+..+..+++.+... ..+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 457899999999999999999998876542 2 4444544322 23355566677777654321 1233333333334
Q ss_pred HHhcCCcEEEEEeCCC
Q 042728 254 RLKKEKQLLIILDNIW 269 (486)
Q Consensus 254 ~L~~~kr~LlVlDdv~ 269 (486)
.+.. . -++|+|..-
T Consensus 172 ~~~~-~-DvVIIDTAG 185 (437)
T PRK00771 172 KFKK-A-DVIIVDTAG 185 (437)
T ss_pred Hhhc-C-CEEEEECCC
Confidence 4432 2 567788774
No 181
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.25 E-value=0.0003 Score=57.67 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+|.|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 182
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.25 E-value=0.00067 Score=69.78 Aligned_cols=74 Identities=22% Similarity=0.258 Sum_probs=56.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH-h
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERL-K 256 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~ 256 (486)
..++..++|++|.||||||+.++++.. ..++=+++|...+...+-..|...+..... + .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG-----YsVvEINASDeRt~~~v~~kI~~avq~~s~---------------l~a 384 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG-----YSVVEINASDERTAPMVKEKIENAVQNHSV---------------LDA 384 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC-----ceEEEecccccccHHHHHHHHHHHHhhccc---------------ccc
Confidence 457899999999999999999998763 246778899998888877777766543322 2 1
Q ss_pred cCCcEEEEEeCCCCc
Q 042728 257 KEKQLLIILDNIWTK 271 (486)
Q Consensus 257 ~~kr~LlVlDdv~~~ 271 (486)
+.++..||+|.++..
T Consensus 385 dsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGA 399 (877)
T ss_pred CCCcceEEEecccCC
Confidence 257888999999854
No 183
>PRK06526 transposase; Provisional
Probab=97.22 E-value=0.00061 Score=63.51 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=44.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKE 258 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 258 (486)
...+.|+|++|+|||+||..+.+....++ + .+.|+ +..+++..+..... ..... ..+ ..+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g-~-~v~f~------t~~~l~~~l~~~~~-----~~~~~---~~l-~~l~-- 158 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG-H-RVLFA------TAAQWVARLAAAHH-----AGRLQ---AEL-VKLG-- 158 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC-C-chhhh------hHHHHHHHHHHHHh-----cCcHH---HHH-HHhc--
Confidence 34589999999999999999998876542 2 23342 33445555543311 11111 122 2232
Q ss_pred CcEEEEEeCCCCc
Q 042728 259 KQLLIILDNIWTK 271 (486)
Q Consensus 259 kr~LlVlDdv~~~ 271 (486)
+.-|||+||+...
T Consensus 159 ~~dlLIIDD~g~~ 171 (254)
T PRK06526 159 RYPLLIVDEVGYI 171 (254)
T ss_pred cCCEEEEcccccC
Confidence 3469999999743
No 184
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.21 E-value=0.0048 Score=57.17 Aligned_cols=88 Identities=13% Similarity=0.221 Sum_probs=57.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------------------
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEF------------------- 238 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------------- 238 (486)
.-.++.|.|++|+|||++|.++......+ -..++|++... ++.++.+.+. +++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~~~ 94 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTGGI 94 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEecccccc
Confidence 34689999999999999999987665433 45788888755 4445554432 232210
Q ss_pred -----------CCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 042728 239 -----------GLNENEFQRAERLHERLKKEKQLLIILDNIWT 270 (486)
Q Consensus 239 -----------~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~ 270 (486)
..+.+..+....+.+.+...+.-++|+|.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 95 GEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred ccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 01235556667777766543455799999864
No 185
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.21 E-value=0.031 Score=57.77 Aligned_cols=201 Identities=17% Similarity=0.180 Sum_probs=123.7
Q ss_pred ccccccHHHHHHHHHHHhc----c-CCccEEEEEcCCCCcHHHHHHHHHHHHhH---cc---CCCeEEEEEeCCCCCHHH
Q 042728 157 FEAFDSRMKVFQDVMEALR----D-DKLNIIGVHGMGGVGKTTIVKQVAKQVME---EN---LFDKVVMAEVTQTPDHHK 225 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~----~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~---~f~~~~wv~vs~~~~~~~ 225 (486)
+..+-+|+.+..+|-+++. + .....+-|.|-+|+|||..+..|.+.+.. ++ .|+ .+.++.-.-..+.+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 4456789999999888773 2 23347889999999999999999987652 22 233 23444445567999
Q ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc-----ccccccCCCCCcccccccCCCCCc
Q 042728 226 IQNKLAFDLGMEFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTKL-----ELDKFGIPTGDVAEKDRKDDQRRC 296 (486)
Q Consensus 226 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~-----~~~~l~~~~~~~~~~~~~~~~~~s 296 (486)
++..|...+.... .........|..++. ..+.++|++|+++... .+..+ .-.+ ..++|
T Consensus 474 ~Y~~I~~~lsg~~---~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~-fdWp---------t~~~s 540 (767)
T KOG1514|consen 474 IYEKIWEALSGER---VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNI-FDWP---------TLKNS 540 (767)
T ss_pred HHHHHHHhcccCc---ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHH-hcCC---------cCCCC
Confidence 9999999987653 233344444544444 2456899999987541 12222 1111 45577
Q ss_pred EEEEEeCch--hhhhhhc-------CCcccEEcCCCChHHHHHHHHHHhCCC--CCCCchHHHHHHHHHHcCCChHHHHH
Q 042728 297 TIILTSRKQ--DLLRIDM-------NSQKNFQIDALPPKEALQLFEEIVGDS--TKISAFQSTANEIVERCGGLPVALST 365 (486)
Q Consensus 297 ~ilvTtR~~--~v~~~~~-------~~~~~~~l~~L~~~e~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~~~GlPlai~~ 365 (486)
+++|-+=.. ......+ -....+...|-+.++-.+++..++.+. ..+...+-++++|+.-.|..-.|+..
T Consensus 541 KLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldi 620 (767)
T KOG1514|consen 541 KLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDI 620 (767)
T ss_pred ceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHH
Confidence 765543221 1111111 123568888999999999988877642 22233344566666666666666666
Q ss_pred HHHHhc
Q 042728 366 VANALK 371 (486)
Q Consensus 366 ~~~~L~ 371 (486)
.-+...
T Consensus 621 c~RA~E 626 (767)
T KOG1514|consen 621 CRRAAE 626 (767)
T ss_pred HHHHHH
Confidence 655443
No 186
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0019 Score=66.39 Aligned_cols=161 Identities=17% Similarity=0.139 Sum_probs=86.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP--DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLK 256 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 256 (486)
.+.|.|.|+.|+|||+||+.+++... +.+..++.+++++.-. ..+.+.+.+. ..+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~-----------------~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLN-----------------NVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHH-----------------HHHHHHHh
Confidence 35688999999999999999999887 4566677788776432 2333332222 12233344
Q ss_pred cCCcEEEEEeCCCCcc--------ccccccCCCCCcc---cccccCCCCCcEEEEEeCchhhhhhhcC----CcccEEcC
Q 042728 257 KEKQLLIILDNIWTKL--------ELDKFGIPTGDVA---EKDRKDDQRRCTIILTSRKQDLLRIDMN----SQKNFQID 321 (486)
Q Consensus 257 ~~kr~LlVlDdv~~~~--------~~~~l~~~~~~~~---~~~~~~~~~~s~ilvTtR~~~v~~~~~~----~~~~~~l~ 321 (486)
-.+-++||||++... +|......+..++ ...+...++...+|.|............ -...+.|+
T Consensus 493 -~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 493 -YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred -hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 367899999997431 1111100000000 0011112222345555554432211111 12357888
Q ss_pred CCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCC
Q 042728 322 ALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGL 359 (486)
Q Consensus 322 ~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl 359 (486)
.+...+-.++++....... .....+...-+..+|+|.
T Consensus 572 ap~~~~R~~IL~~~~s~~~-~~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNL-SDITMDDLDFLSVKTEGY 608 (952)
T ss_pred CcchhHHHHHHHHHHHhhh-hhhhhHHHHHHHHhcCCc
Confidence 9988888888776554222 111223334488888883
No 187
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.19 E-value=0.00066 Score=65.58 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=41.0
Q ss_pred ccccHHHHHHHHHHHhcc------CCccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 159 AFDSRMKVFQDVMEALRD------DKLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 159 ~~~gR~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
.++|-++.+++|++++.. ...+++.++|++|+||||||..+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 789999999999999843 24578999999999999999999988865
No 188
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.19 E-value=0.0028 Score=58.22 Aligned_cols=86 Identities=22% Similarity=0.200 Sum_probs=52.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHH----h-C-CCCCCCCCHHH---HHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFD----L-G-MEFGLNENEFQ---RAE 249 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~----l-~-~~~~~~~~~~~---~~~ 249 (486)
-.++.|+|++|+|||+++.+++...... -..++|++.. .++...+. ++... + . .....+.+..+ ...
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 4689999999999999999998877544 4678999887 55554433 23222 1 0 00001222222 233
Q ss_pred HHHHHHhcCCcEEEEEeCCC
Q 042728 250 RLHERLKKEKQLLIILDNIW 269 (486)
Q Consensus 250 ~l~~~L~~~kr~LlVlDdv~ 269 (486)
.+...+. .+.-++|+|.+.
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~ 117 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHH-hcccEEEEeCcH
Confidence 3444443 356799999984
No 189
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.0026 Score=62.33 Aligned_cols=89 Identities=19% Similarity=0.205 Sum_probs=55.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ-TPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKK 257 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (486)
..++.++|+.|+||||++..++.....+.....+..++... .....+-++...+.++.+.....+..+....+ ..+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l-~~l~- 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL-AELR- 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH-HHhc-
Confidence 46899999999999999999998765431223556665433 23556667777777777654333333333333 3333
Q ss_pred CCcEEEEEeCCCC
Q 042728 258 EKQLLIILDNIWT 270 (486)
Q Consensus 258 ~kr~LlVlDdv~~ 270 (486)
++-++++|..-.
T Consensus 215 -~~DlVLIDTaG~ 226 (374)
T PRK14722 215 -NKHMVLIDTIGM 226 (374)
T ss_pred -CCCEEEEcCCCC
Confidence 235677998853
No 190
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0069 Score=55.99 Aligned_cols=176 Identities=18% Similarity=0.188 Sum_probs=93.9
Q ss_pred ccccHHHHHHHHHHHhc----------cC--CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHH
Q 042728 159 AFDSRMKVFQDVMEALR----------DD--KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKI 226 (486)
Q Consensus 159 ~~~gR~~~~~~l~~~L~----------~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~ 226 (486)
.+-|-+...+.|.+... .. .-+-|.++|++|.|||.||+.|+.... .-|.++|...-+...
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-------STFFSvSSSDLvSKW 206 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-------STFFSVSSSDLVSKW 206 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-------CceEEeehHHHHHHH
Confidence 45566777777766542 11 246688999999999999999997653 123455443222111
Q ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc---------ccccccCCCCCcccccc--cCCCCC
Q 042728 227 QNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL---------ELDKFGIPTGDVAEKDR--KDDQRR 295 (486)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~~~~--~~~~~~ 295 (486)
+ | ..+.+...|.+..+..|+-+|++|.++... .-..+..- |+.++. ..+..|
T Consensus 207 m-------G-------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTE---fLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 207 M-------G-------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTE---FLVQMQGVGNDNDG 269 (439)
T ss_pred h-------c-------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHH---HHHhhhccccCCCc
Confidence 1 1 124455666666666799999999997541 11111000 111111 114455
Q ss_pred cEEEEEeCchhhhhhhcC--CcccEEcCCCChHHHHH-HHHHHhCCCCCCCchHHHHHHHHHHcCCCh
Q 042728 296 CTIILTSRKQDLLRIDMN--SQKNFQIDALPPKEALQ-LFEEIVGDSTKISAFQSTANEIVERCGGLP 360 (486)
Q Consensus 296 s~ilvTtR~~~v~~~~~~--~~~~~~l~~L~~~e~~~-Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 360 (486)
.-||-.|..+-+...... -...|-+ ||++..+.. +|+-+++.. +..-.+...+++.+++.|..
T Consensus 270 vLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~t-p~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDT-PHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred eEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCC-ccccchhhHHHHHhhcCCCC
Confidence 556666666544332111 1122322 455555544 566666532 22222344566777777753
No 191
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.17 E-value=0.0033 Score=59.76 Aligned_cols=88 Identities=24% Similarity=0.300 Sum_probs=51.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLK 256 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 256 (486)
...++.|+|++|+||||++..++.....+..-..+..++..... ...+.+....+.++.+.....+..+....+ +.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l-~~~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKAL-DRLR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHH-HHcc
Confidence 34689999999999999999998877544111345566654322 233444445555665544334444443333 3333
Q ss_pred cCCcEEEEEeCC
Q 042728 257 KEKQLLIILDNI 268 (486)
Q Consensus 257 ~~kr~LlVlDdv 268 (486)
..=+|++|..
T Consensus 272 --~~d~vliDt~ 281 (282)
T TIGR03499 272 --DKDLILIDTA 281 (282)
T ss_pred --CCCEEEEeCC
Confidence 2347777753
No 192
>PRK06696 uridine kinase; Validated
Probab=97.14 E-value=0.00083 Score=61.64 Aligned_cols=45 Identities=20% Similarity=0.391 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 162 SRMKVFQDVMEALR---DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 162 gR~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
.|.+.+++|.+.+. .+.+.+|+|.|.+|+||||||+.+.......
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46777888888774 3567899999999999999999999887543
No 193
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.14 E-value=0.0054 Score=56.67 Aligned_cols=89 Identities=15% Similarity=0.258 Sum_probs=53.7
Q ss_pred HHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC
Q 042728 166 VFQDVMEALRD--DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNEN 243 (486)
Q Consensus 166 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 243 (486)
.+..+.+...+ .+...+.++|.+|+|||+||..+++....+ -..+++++ ..+++..+-...... ..+
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~~~---~~~ 152 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFSNS---ETS 152 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHhhc---ccc
Confidence 44444444432 223568899999999999999999988654 34556663 455555554443210 111
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 042728 244 EFQRAERLHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 244 ~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 271 (486)
. ..+.+.+. +.=|||+||+...
T Consensus 153 ~----~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 153 E----EQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred H----HHHHHHhc--cCCEEEEeCCCCC
Confidence 2 23334454 3458899999654
No 194
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.13 E-value=0.0022 Score=61.70 Aligned_cols=91 Identities=20% Similarity=0.217 Sum_probs=58.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHc----cCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCCCHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEE----NLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG---------LNENEF 245 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 245 (486)
-.++-|+|++|+|||+|+.+++-..... ..-..++|++....+++..+. ++++.++.+.. ...+.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCHH
Confidence 4678899999999999999877543211 112478999999988887765 45666665432 112333
Q ss_pred HHH---HHHHHHHhcCCcEEEEEeCCCC
Q 042728 246 QRA---ERLHERLKKEKQLLIILDNIWT 270 (486)
Q Consensus 246 ~~~---~~l~~~L~~~kr~LlVlDdv~~ 270 (486)
+.. ..+...+...+.-|||+|.+-.
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 333 3333344444556899999853
No 195
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.11 E-value=0.0048 Score=59.20 Aligned_cols=91 Identities=15% Similarity=0.256 Sum_probs=57.0
Q ss_pred cHHHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042728 162 SRMKVFQDVMEALRD----DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGME 237 (486)
Q Consensus 162 gR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 237 (486)
+|........+++.+ ...+-+.|+|..|+|||.||..+++....+ . ..+.++++ .+++..+....+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g-~~v~~~~~------~~l~~~lk~~~~~- 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-G-VSSTLLHF------PEFIRELKNSISD- 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-C-CCEEEEEH------HHHHHHHHHHHhc-
Confidence 455555555555542 134568899999999999999999998754 2 33555544 3555666554431
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 042728 238 FGLNENEFQRAERLHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 238 ~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 271 (486)
.+. ....+.+. +-=||||||+...
T Consensus 206 ----~~~----~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 206 ----GSV----KEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred ----CcH----HHHHHHhc--CCCEEEEecCCCc
Confidence 111 22333343 4569999999643
No 196
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.012 Score=59.75 Aligned_cols=132 Identities=17% Similarity=0.264 Sum_probs=77.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKE 258 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 258 (486)
+.=|.++|++|+|||-||+.|+|..... | +++-.. +++.... .+ .+.....+...-+..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N--F-----isVKGP----ELlNkYV---------GE-SErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN--F-----ISVKGP----ELLNKYV---------GE-SERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc--e-----EeecCH----HHHHHHh---------hh-HHHHHHHHHHHhhcC
Confidence 4558899999999999999999987543 3 444333 2222111 11 122334444444556
Q ss_pred CcEEEEEeCCCCcc-------------ccccccCCCCCcccccccCCCCCcEEEEEeCchhhh-hhhc---CCcccEEcC
Q 042728 259 KQLLIILDNIWTKL-------------ELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLL-RIDM---NSQKNFQID 321 (486)
Q Consensus 259 kr~LlVlDdv~~~~-------------~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~-~~~~---~~~~~~~l~ 321 (486)
-+|+|+||.++... ..+++..-+. ......|.-||-.|..+.+- .... .-...+-++
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElD------Gl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~ 677 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELD------GLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVG 677 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhc------ccccccceEEEeecCCCcccchhhcCCCccCceeeec
Confidence 89999999997541 1222211111 11244566677666555432 2112 223456677
Q ss_pred CCChHHHHHHHHHHhC
Q 042728 322 ALPPKEALQLFEEIVG 337 (486)
Q Consensus 322 ~L~~~e~~~Lf~~~~~ 337 (486)
.-+.+|-.++++....
T Consensus 678 lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 678 LPNAEERVAILKTITK 693 (802)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 7788888899988876
No 197
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.10 E-value=0.0026 Score=61.52 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=29.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEe
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEV 217 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v 217 (486)
..+.++|.+|+|||+||..+++....++ ..++|+++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEH
Confidence 6689999999999999999999887652 35666654
No 198
>PRK07261 topology modulation protein; Provisional
Probab=97.09 E-value=0.0012 Score=57.88 Aligned_cols=66 Identities=17% Similarity=0.256 Sum_probs=40.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhHc-cCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVMEE-NLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEK 259 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (486)
.|.|+|++|+||||||+.+....... -+.|...|-.-. ...+.++....+.+.+.+ .
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~-~ 59 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---------------------QERDDDDMIADISNFLLK-H 59 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---------------------ccCCHHHHHHHHHHHHhC-C
Confidence 48899999999999999998765321 134445552110 022344555566666664 4
Q ss_pred cEEEEEeCCCC
Q 042728 260 QLLIILDNIWT 270 (486)
Q Consensus 260 r~LlVlDdv~~ 270 (486)
+ .|+|+...
T Consensus 60 ~--wIidg~~~ 68 (171)
T PRK07261 60 D--WIIDGNYS 68 (171)
T ss_pred C--EEEcCcch
Confidence 4 67788743
No 199
>PRK10867 signal recognition particle protein; Provisional
Probab=97.09 E-value=0.059 Score=54.11 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
.+.+|.++|++|+||||.+..++.....+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46789999999999999999988876544
No 200
>PRK09183 transposase/IS protein; Provisional
Probab=97.09 E-value=0.00087 Score=62.82 Aligned_cols=73 Identities=21% Similarity=0.190 Sum_probs=42.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEK 259 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (486)
..+.|+|++|+|||+||..+.+..... -..+.+++ ..++...+...... .. ....+...+ .+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~--G~~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~--~~ 164 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRA--GIKVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV--MA 164 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh--cC
Confidence 457899999999999999998776543 22344443 23344333322110 11 112222222 24
Q ss_pred cEEEEEeCCCC
Q 042728 260 QLLIILDNIWT 270 (486)
Q Consensus 260 r~LlVlDdv~~ 270 (486)
.-++|+||+..
T Consensus 165 ~dlLiiDdlg~ 175 (259)
T PRK09183 165 PRLLIIDEIGY 175 (259)
T ss_pred CCEEEEccccc
Confidence 56999999964
No 201
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.06 E-value=0.0079 Score=64.02 Aligned_cols=173 Identities=16% Similarity=0.182 Sum_probs=88.9
Q ss_pred ccccccHHHHHHHHHH---Hhcc---------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHH
Q 042728 157 FEAFDSRMKVFQDVME---ALRD---------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHH 224 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~---~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (486)
...+.|-+...+++.+ .+.. .-.+-|.|+|++|+|||++|+.++...... | +.++.+.
T Consensus 151 ~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~--f---~~is~~~----- 220 (644)
T PRK10733 151 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSD----- 220 (644)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC--E---EEEehHH-----
Confidence 3455676655555444 3322 113458899999999999999998765432 2 2222221
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc----------------cccccCCCCCccccc
Q 042728 225 KIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE----------------LDKFGIPTGDVAEKD 288 (486)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~----------------~~~l~~~~~~~~~~~ 288 (486)
+.. ... ..... ....+........+++|++|+++.... +..+......
T Consensus 221 -~~~----~~~-----g~~~~-~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg----- 284 (644)
T PRK10733 221 -FVE----MFV-----GVGAS-RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG----- 284 (644)
T ss_pred -hHH----hhh-----cccHH-HHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhc-----
Confidence 110 000 11111 222222233334679999999975411 0111000000
Q ss_pred ccCCCCCcEEEEEeCchhhhhhhc----CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCC
Q 042728 289 RKDDQRRCTIILTSRKQDLLRIDM----NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGG 358 (486)
Q Consensus 289 ~~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~G 358 (486)
.....+.-+|.||.......... .-...+.++..+.++-.++++.+.......+.. ....+++.+.|
T Consensus 285 -~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~--d~~~la~~t~G 355 (644)
T PRK10733 285 -FEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPG 355 (644)
T ss_pred -ccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcC--CHHHHHhhCCC
Confidence 01234555666777665322111 123568888888888888888877643222211 12346666666
No 202
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.05 E-value=0.0085 Score=55.17 Aligned_cols=30 Identities=23% Similarity=0.529 Sum_probs=26.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
+...+++|.|++|+|||||++.+.......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 467799999999999999999999887654
No 203
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.04 E-value=0.0021 Score=56.62 Aligned_cols=36 Identities=28% Similarity=0.472 Sum_probs=29.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEE
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMA 215 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 215 (486)
...+|.+.|++|+||||+|+.++...... +..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 45689999999999999999999888654 5555555
No 204
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.03 E-value=0.0065 Score=56.75 Aligned_cols=92 Identities=20% Similarity=0.278 Sum_probs=58.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC------CCCCCCHHH-----
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGME------FGLNENEFQ----- 246 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~----- 246 (486)
-+.++|.|.+|+|||||++.+++....+ +-+.++++.+.+.. .+.++.+++...-... .....+...
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 3568999999999999999999988764 23456677777665 4556666665432111 011122211
Q ss_pred -HHHHHHHHHh-c-CCcEEEEEeCCCCc
Q 042728 247 -RAERLHERLK-K-EKQLLIILDNIWTK 271 (486)
Q Consensus 247 -~~~~l~~~L~-~-~kr~LlVlDdv~~~ 271 (486)
..-.+-+++. + ++.+|+++||+-..
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 2233455553 2 68899999998643
No 205
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.03 E-value=0.0083 Score=53.88 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=39.6
Q ss_pred cCccccccHHHHHHHHHHHh----ccCCccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 155 KDFEAFDSRMKVFQDVMEAL----RDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
.+...++|-+...+.|++.- ......-|.++|.-|+|||+|++.+.+....+
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~ 112 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE 112 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc
Confidence 34456788777777776543 33445668899999999999999999998765
No 206
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.015 Score=60.30 Aligned_cols=160 Identities=19% Similarity=0.197 Sum_probs=82.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKK 257 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (486)
..+.+.++|++|+|||.||+.+++..... |-.+ ... +++... + ..+ +.....+...-..
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~--fi~v-----~~~----~l~sk~---v------Ges-ek~ir~~F~~A~~ 333 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR--FISV-----KGS----ELLSKW---V------GES-EKNIRELFEKARK 333 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe--EEEe-----eCH----HHhccc---c------chH-HHHHHHHHHHHHc
Confidence 45678999999999999999999854332 3222 111 111000 0 111 2223333333333
Q ss_pred CCcEEEEEeCCCCccccccccCC------CCCccc-ccccCCCCCcEEEEEeCchhhhhhhc----CCcccEEcCCCChH
Q 042728 258 EKQLLIILDNIWTKLELDKFGIP------TGDVAE-KDRKDDQRRCTIILTSRKQDLLRIDM----NSQKNFQIDALPPK 326 (486)
Q Consensus 258 ~kr~LlVlDdv~~~~~~~~l~~~------~~~~~~-~~~~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~ 326 (486)
..++.|++|+++....+..-... ...++- ........+..||-||.........+ .-...+.+++-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 57899999999765222211000 000000 00011334445555555543322111 22457889999999
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHcCC
Q 042728 327 EALQLFEEIVGDSTKISAFQSTANEIVERCGG 358 (486)
Q Consensus 327 e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~G 358 (486)
+..++|+.+...........-..+.+++.+.|
T Consensus 414 ~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 414 ERLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 99999999887432221112234445555555
No 207
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.98 E-value=0.0065 Score=59.00 Aligned_cols=91 Identities=19% Similarity=0.140 Sum_probs=59.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhH----ccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCCCHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVME----ENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG---------LNENEF 245 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 245 (486)
-.++-|+|++|+|||+|+.+++-.... .+.-..++|++....|++..+.+ +++.++.+.. ...+.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~e 204 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTYE 204 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCHH
Confidence 467889999999999999998744321 11224789999999999887655 5666665432 122334
Q ss_pred HHH---HHHHHHHhcCCcEEEEEeCCCC
Q 042728 246 QRA---ERLHERLKKEKQLLIILDNIWT 270 (486)
Q Consensus 246 ~~~---~~l~~~L~~~kr~LlVlDdv~~ 270 (486)
+.. ..+...+...+--|||+|.+-.
T Consensus 205 ~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 205 HQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 333 3333334334556899999853
No 208
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.97 E-value=0.0043 Score=54.59 Aligned_cols=74 Identities=23% Similarity=0.284 Sum_probs=45.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKE 258 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 258 (486)
..-+.++|++|+|||.||..+.+....+ -..+.|++ ..+++..+-.. .. .... ..+.+.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~--g~~v~f~~------~~~L~~~l~~~----~~-~~~~----~~~~~~l~-- 107 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRK--GYSVLFIT------ASDLLDELKQS----RS-DGSY----EELLKRLK-- 107 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEE------HHHHHHHHHCC----HC-CTTH----CHHHHHHH--
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccC--CcceeEee------cCceecccccc----cc-ccch----hhhcCccc--
Confidence 3568999999999999999999887664 23456664 34455554321 11 1121 22334454
Q ss_pred CcEEEEEeCCCCc
Q 042728 259 KQLLIILDNIWTK 271 (486)
Q Consensus 259 kr~LlVlDdv~~~ 271 (486)
+.=||||||+-..
T Consensus 108 ~~dlLilDDlG~~ 120 (178)
T PF01695_consen 108 RVDLLILDDLGYE 120 (178)
T ss_dssp TSSCEEEETCTSS
T ss_pred cccEeccccccee
Confidence 2358889999754
No 209
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.97 E-value=0.0027 Score=69.62 Aligned_cols=107 Identities=19% Similarity=0.257 Sum_probs=61.7
Q ss_pred ccccccHHHHHHHHHHHhcc-------CC--ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALRD-------DK--LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQ 227 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~-------~~--~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 227 (486)
...++|.+..++.+.+.+.. ++ ...+.++|+.|+|||+||+.+++..-.. -...+-++.+.-.....+.
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccHH
Confidence 35678999999999887742 11 2456799999999999999999876322 1233444444332221111
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 042728 228 NKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 228 ~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 271 (486)
.-++.++. ....+ ....+.+.+......+++||+++..
T Consensus 586 ----~l~g~~~g-yvg~~-~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 586 ----KLIGSPPG-YVGYN-EGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred ----HhcCCCCc-ccCcC-ccchHHHHHHhCCCeEEEECChhhC
Confidence 11222211 11110 1123455555434468999999865
No 210
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.96 E-value=0.19 Score=49.46 Aligned_cols=89 Identities=25% Similarity=0.304 Sum_probs=53.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEe-CCCCCHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEV-TQTPDHHKIQNKLAFDLGMEFG---LNENEFQRAERLHE 253 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 253 (486)
.+.+|..+|.-|.||||-+..+++.++.+ .+. +.-|++ -..+...+-++.+.++.+.+.- ...++.+.+..-.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~-~~k-vllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKK-GKK-VLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHc-CCc-eEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 46789999999999999999999998773 232 333333 2344556677888888876532 12334444333333
Q ss_pred HHhcCCcEEEEEeCC
Q 042728 254 RLKKEKQLLIILDNI 268 (486)
Q Consensus 254 ~L~~~kr~LlVlDdv 268 (486)
..+....=++|+|-.
T Consensus 177 ~ak~~~~DvvIvDTA 191 (451)
T COG0541 177 KAKEEGYDVVIVDTA 191 (451)
T ss_pred HHHHcCCCEEEEeCC
Confidence 333222234445544
No 211
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.96 E-value=0.1 Score=52.13 Aligned_cols=38 Identities=32% Similarity=0.401 Sum_probs=28.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEe
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEV 217 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v 217 (486)
.+.+|.++|+.|+||||++..++.....++ + .+..|+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G-~-kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKG-F-KPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC-C-CEEEEcC
Confidence 457999999999999999999988776442 2 4444544
No 212
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0025 Score=63.43 Aligned_cols=94 Identities=21% Similarity=0.264 Sum_probs=58.4
Q ss_pred ccccccHH---HHHHHHHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHH
Q 042728 157 FEAFDSRM---KVFQDVMEALRDD---------KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHH 224 (486)
Q Consensus 157 ~~~~~gR~---~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (486)
.+++-|-+ .|++++++.|.++ -++=|.++|++|.|||-||+.++-...+. +|...+..|+.
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP------FF~~sGSEFdE- 375 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP------FFYASGSEFDE- 375 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC------eEeccccchhh-
Confidence 34455554 5677888888764 24568899999999999999998765543 22333333322
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 042728 225 KIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 271 (486)
++ -..| ..+...|...-+..-+|+|++|.++..
T Consensus 376 -m~----VGvG---------ArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 376 -MF----VGVG---------ARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred -hh----hccc---------HHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 11 1000 123344444444467899999998743
No 213
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.0085 Score=58.34 Aligned_cols=91 Identities=20% Similarity=0.172 Sum_probs=58.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLK 256 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 256 (486)
+.+++.++|+.|+||||++..++.....++ ..+.+++..... ...+-++...+.++.+.....+..+....+...-.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 457899999999999999999997765442 356677665432 34556666777777654334455555444433321
Q ss_pred cCCcEEEEEeCCCC
Q 042728 257 KEKQLLIILDNIWT 270 (486)
Q Consensus 257 ~~kr~LlVlDdv~~ 270 (486)
.+..=++++|-.-.
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 12345788888754
No 214
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.90 E-value=0.0077 Score=55.02 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=33.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCC
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPD 222 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~ 222 (486)
.-.++.|.|.+|+||||++.+++.....+ -..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 34689999999999999999999877543 34678887655543
No 215
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.012 Score=58.24 Aligned_cols=90 Identities=19% Similarity=0.147 Sum_probs=56.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHcc--CCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEEN--LFDKVVMAEVTQTP-DHHKIQNKLAFDLGMEFGLNENEFQRAERLHER 254 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 254 (486)
..++|.++|+.|+||||.+..++....... .-..+..++..... ....-++...+.++.+.....+.......+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~- 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ- 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH-
Confidence 457899999999999999999987765321 22355666655322 33344666677777765434444444443433
Q ss_pred HhcCCcEEEEEeCCCC
Q 042728 255 LKKEKQLLIILDNIWT 270 (486)
Q Consensus 255 L~~~kr~LlVlDdv~~ 270 (486)
+. +.-++++|....
T Consensus 252 ~~--~~DlVLIDTaGr 265 (388)
T PRK12723 252 SK--DFDLVLVDTIGK 265 (388)
T ss_pred hC--CCCEEEEcCCCC
Confidence 22 346888898853
No 216
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.89 E-value=0.0065 Score=56.84 Aligned_cols=90 Identities=28% Similarity=0.278 Sum_probs=56.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHc----cCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCCCHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEE----NLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG---------LNENEF 245 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 245 (486)
-.++=|+|++|+|||.|+.+++-..... +.-..++|++-...++...+. +|++..+.... ...+..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 4678899999999999999887554321 123469999999999887765 46666543211 111233
Q ss_pred HH---HHHHHHHHhcCCcEEEEEeCCC
Q 042728 246 QR---AERLHERLKKEKQLLIILDNIW 269 (486)
Q Consensus 246 ~~---~~~l~~~L~~~kr~LlVlDdv~ 269 (486)
++ ...+...+.+.+--|||+|.+-
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHhhccccceEEEEecchH
Confidence 33 3333444444555699999884
No 217
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.015 Score=56.26 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=37.8
Q ss_pred CcEEEEEeCchh-hhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHH
Q 042728 295 RCTIILTSRKQD-LLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVAL 363 (486)
Q Consensus 295 ~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 363 (486)
++.+|++|.+.. +.....+....+.+.+++.++..+.+... + .... . ..+..++|.|+.+
T Consensus 143 ~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~-~---~~~~-~----~~l~~~~g~p~~~ 203 (325)
T PRK08699 143 QVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER-G---VAEP-E----ERLAFHSGAPLFD 203 (325)
T ss_pred CCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc-C---CCcH-H----HHHHHhCCChhhh
Confidence 465777776654 44323455678999999999999888663 1 1111 1 1235688999643
No 218
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.0084 Score=58.64 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=53.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLK 256 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 256 (486)
..++|+++|++|+||||++..++.....++ ..+..++..... ...+-+....+.++.+.....+.......+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~G--kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 347899999999999999999998775432 234455543321 23334445555566554333455555544433322
Q ss_pred cCCcEEEEEeCCCC
Q 042728 257 KEKQLLIILDNIWT 270 (486)
Q Consensus 257 ~~kr~LlVlDdv~~ 270 (486)
..+.=++++|-.-.
T Consensus 318 ~~~~DvVLIDTaGR 331 (436)
T PRK11889 318 EARVDYILIDTAGK 331 (436)
T ss_pred ccCCCEEEEeCccc
Confidence 11224777887643
No 219
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.89 E-value=0.0071 Score=58.35 Aligned_cols=92 Identities=15% Similarity=0.101 Sum_probs=56.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHc---c-CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCCCH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEE---N-LFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG---------LNENE 244 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 244 (486)
...++.|+|.+|+|||+|+.+++...... + .-..++|++....++... +.++++.++.... ...+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCChHHhhccEEEEecCCh
Confidence 35788999999999999999987643221 1 123679999888877776 3445555554321 01223
Q ss_pred HHHH---HHHHHHHhcCCcEEEEEeCCCC
Q 042728 245 FQRA---ERLHERLKKEKQLLIILDNIWT 270 (486)
Q Consensus 245 ~~~~---~~l~~~L~~~kr~LlVlDdv~~ 270 (486)
++.. ..+...+...+.-|||+|.+-.
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI~a 202 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSATA 202 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECcHH
Confidence 3332 2233334334566899998753
No 220
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.88 E-value=0.01 Score=54.63 Aligned_cols=87 Identities=16% Similarity=0.272 Sum_probs=50.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------------C---
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG---------------L--- 240 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------------~--- 240 (486)
..++.|.|++|+||||++.+++.....++ ..+++++. ..+..++.+.+ .+++.... .
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~--e~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~ 98 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVST--QLTTTEFIKQM-MSLGYDINKKLISGKLLYIPVYPLLSG 98 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeC--CCCHHHHHHHH-HHhCCchHHHhhcCcEEEEEecccccC
Confidence 45899999999999999988776654332 45667763 33455666665 33443211 0
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 042728 241 NENEFQRAERLHERLKKEKQLLIILDNIWT 270 (486)
Q Consensus 241 ~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~ 270 (486)
....+.....+.+.....++-++|+|..-.
T Consensus 99 ~~~~~~~l~~il~~~~~~~~~~lVIDe~t~ 128 (230)
T PRK08533 99 NSEKRKFLKKLMNTRRFYEKDVIIIDSLSS 128 (230)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEECccH
Confidence 011123333344443323456899999754
No 221
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.88 E-value=0.0051 Score=63.17 Aligned_cols=57 Identities=26% Similarity=0.350 Sum_probs=42.4
Q ss_pred CccccccHHHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEE
Q 042728 156 DFEAFDSRMKVFQDVMEALRD-----DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAE 216 (486)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 216 (486)
....+.-..+-++++..||.. ...+++.+.|++|+||||.++.+++... |+.+=|.+
T Consensus 17 ~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~n 78 (519)
T PF03215_consen 17 TLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWIN 78 (519)
T ss_pred CHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecC
Confidence 344455556667777777743 2356899999999999999999998873 66677764
No 222
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0028 Score=61.34 Aligned_cols=87 Identities=26% Similarity=0.304 Sum_probs=58.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-CCCCHHHHHHHHHHHHhc
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG-LNENEFQRAERLHERLKK 257 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~L~~ 257 (486)
-.+|.|-|-+|+|||||..+++.+...+. .++||+-.+.... .+--++.|+.+.. ...-.+...+.+...+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~~Q---iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESLQQ---IKLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcCHHH---HHHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 46899999999999999999999997763 7888865444322 2233455664432 112223334555556666
Q ss_pred CCcEEEEEeCCCCc
Q 042728 258 EKQLLIILDNIWTK 271 (486)
Q Consensus 258 ~kr~LlVlDdv~~~ 271 (486)
.++-++|+|-+...
T Consensus 167 ~~p~lvVIDSIQT~ 180 (456)
T COG1066 167 EKPDLVVIDSIQTL 180 (456)
T ss_pred cCCCEEEEecccee
Confidence 78899999998753
No 223
>PRK04328 hypothetical protein; Provisional
Probab=96.86 E-value=0.006 Score=56.90 Aligned_cols=88 Identities=15% Similarity=0.210 Sum_probs=55.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------------------
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG------------------ 239 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------------------ 239 (486)
.-.++.|.|.+|+|||+|+.++......+ -..++|++....+ ..+.+ .+++++.+..
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~~--~~i~~-~~~~~g~d~~~~~~~~~l~iid~~~~~~ 96 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEHP--VQVRR-NMRQFGWDVRKYEEEGKFAIVDAFTGGI 96 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCCH--HHHHH-HHHHcCCCHHHHhhcCCEEEEecccccc
Confidence 34689999999999999999988765433 4567888876643 33333 2333332100
Q ss_pred ------------CCCCHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 042728 240 ------------LNENEFQRAERLHERLKKEKQLLIILDNIWT 270 (486)
Q Consensus 240 ------------~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~ 270 (486)
.+.+.......+.+.+...+.-++|+|.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~ 139 (249)
T PRK04328 97 GSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVST 139 (249)
T ss_pred ccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhH
Confidence 1223455566666666544556899999853
No 224
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.85 E-value=0.0081 Score=52.63 Aligned_cols=87 Identities=20% Similarity=0.221 Sum_probs=47.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCHHHHHHH-HHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGMEFG---LNENEFQRAER-LHERL 255 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~-l~~~L 255 (486)
++.++|++|+||||++..++...... -..++.++..... ...+.+.......+.+.. ...+....... +...+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~--g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK--GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999887654 1234445443221 333444444454443211 12334433333 33333
Q ss_pred hcCCcEEEEEeCCCC
Q 042728 256 KKEKQLLIILDNIWT 270 (486)
Q Consensus 256 ~~~kr~LlVlDdv~~ 270 (486)
.+ ..-++|+|..-.
T Consensus 80 ~~-~~d~viiDt~g~ 93 (173)
T cd03115 80 EE-NFDVVIVDTAGR 93 (173)
T ss_pred hC-CCCEEEEECccc
Confidence 32 333566777654
No 225
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.84 E-value=0.012 Score=56.37 Aligned_cols=86 Identities=15% Similarity=0.175 Sum_probs=56.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG-----LNENEFQRAERLHE 253 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 253 (486)
-+++-|+|+.|+||||||.++....... -..++|+.....+++. .++.+|.+.+ .+.+.++....+..
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 4689999999999999999998776544 4578999988776663 4455665433 24455666666666
Q ss_pred HHhcCCcEEEEEeCCCCc
Q 042728 254 RLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 254 ~L~~~kr~LlVlDdv~~~ 271 (486)
.++.+..-++|+|.|-..
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 666555568999998765
No 226
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.84 E-value=0.0053 Score=59.66 Aligned_cols=91 Identities=16% Similarity=0.141 Sum_probs=58.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHc----cCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCCCHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEE----NLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG---------LNENEF 245 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 245 (486)
..++-|+|.+|+|||+|+..++-..... ..-..++|++....+++..+. +|++.++.... ...+.+
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~~~~~~~~e 201 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVAYARAYNTD 201 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceEEEecCCHH
Confidence 4678899999999999999887543211 112379999999999887764 55666665432 112333
Q ss_pred HHHHHH---HHHHhcCCcEEEEEeCCCC
Q 042728 246 QRAERL---HERLKKEKQLLIILDNIWT 270 (486)
Q Consensus 246 ~~~~~l---~~~L~~~kr~LlVlDdv~~ 270 (486)
.....+ ...+...+.-|||+|.+-.
T Consensus 202 ~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 202 HQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 333222 2333434566899998853
No 227
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.81 E-value=0.007 Score=56.80 Aligned_cols=90 Identities=21% Similarity=0.270 Sum_probs=52.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCH-HHHHHHHHHHhCCCCC-----------CC----
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDH-HKIQNKLAFDLGMEFG-----------LN---- 241 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~-~~~~~~i~~~l~~~~~-----------~~---- 241 (486)
.-.++.|.|++|+|||+++.+++.....+ -..++|++....... ..-+...+..++.+.. ..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d~~~~~~~l~~id~~~~~~~ 112 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVESPANFVYTSLKERAKAMGVDFDKIEENIILIDAASSTEL 112 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCCchHHHHHHHHHHHHcCCCHHHHhCCEEEEECCCchhh
Confidence 34689999999999999999987765443 346788888643311 0111222333333210 01
Q ss_pred -CCHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 042728 242 -ENEFQRAERLHERLKKEKQLLIILDNIW 269 (486)
Q Consensus 242 -~~~~~~~~~l~~~L~~~kr~LlVlDdv~ 269 (486)
.+..+....+.......+.=++|+|.+.
T Consensus 113 ~~~~~~l~~~l~~~i~~~~~~~vVIDSls 141 (259)
T TIGR03878 113 RENVPNLLATLAYAIKEYKVKNTVIDSIT 141 (259)
T ss_pred hhhHHHHHHHHHHHHHhhCCCEEEEcCch
Confidence 1234444555555544345588999885
No 228
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0059 Score=63.48 Aligned_cols=101 Identities=18% Similarity=0.239 Sum_probs=66.3
Q ss_pred ccccccCccccccHHHHHHHHHHHhcc---------C---CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEe
Q 042728 150 EHIQVKDFEAFDSRMKVFQDVMEALRD---------D---KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEV 217 (486)
Q Consensus 150 ~~~~~~~~~~~~gR~~~~~~l~~~L~~---------~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v 217 (486)
|..|...-+++-|-++...+|.+.+.- . ..+=|.++|++|.|||-||+.|+....- -|++|
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSV 736 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSV 736 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEee
Confidence 444555566777889999999888732 1 2345889999999999999999977643 34555
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 042728 218 TQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 218 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 271 (486)
-.+ +++.--. ..+ ++-.+.+.+.-+.-++|+|+||.+++.
T Consensus 737 KGP----ELLNMYV---------GqS-E~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 737 KGP----ELLNMYV---------GQS-EENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred cCH----HHHHHHh---------cch-HHHHHHHHHHhhccCCeEEEecccccc
Confidence 433 1221111 112 333445555555568999999999865
No 229
>PRK06921 hypothetical protein; Provisional
Probab=96.81 E-value=0.008 Score=56.54 Aligned_cols=72 Identities=24% Similarity=0.290 Sum_probs=45.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKK 257 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (486)
....+.++|.+|+|||+||..+++....+. ...++|++. .+++..+...+ . ......+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~----------~-~~~~~~~~~~- 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF----------D-LLEAKLNRMK- 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH----------H-HHHHHHHHhc-
Confidence 346789999999999999999999876541 244566654 23333332221 1 1112233333
Q ss_pred CCcEEEEEeCCC
Q 042728 258 EKQLLIILDNIW 269 (486)
Q Consensus 258 ~kr~LlVlDdv~ 269 (486)
+-=||||||+.
T Consensus 177 -~~dlLiIDDl~ 187 (266)
T PRK06921 177 -KVEVLFIDDLF 187 (266)
T ss_pred -CCCEEEEeccc
Confidence 34699999993
No 230
>PTZ00035 Rad51 protein; Provisional
Probab=96.81 E-value=0.013 Score=57.14 Aligned_cols=92 Identities=16% Similarity=0.141 Sum_probs=57.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhH----ccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCCCH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVME----ENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG---------LNENE 244 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 244 (486)
.-.++.|+|++|+|||+|+.+++-.... ...-..++|++....+++.. +.++++.++.... ...+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCChHhHhhceEEEccCCH
Confidence 3468899999999999999988755431 01224677999888777766 4445666554321 12233
Q ss_pred HHHHHH---HHHHHhcCCcEEEEEeCCCC
Q 042728 245 FQRAER---LHERLKKEKQLLIILDNIWT 270 (486)
Q Consensus 245 ~~~~~~---l~~~L~~~kr~LlVlDdv~~ 270 (486)
++.... +...+...+--|||+|.+..
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 333333 33334444556999999854
No 231
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.81 E-value=0.011 Score=54.73 Aligned_cols=87 Identities=17% Similarity=0.229 Sum_probs=56.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------------------
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG------------------ 239 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------------------ 239 (486)
...++.|+|.+|+|||+|+.++......+ -..++|++.... +.++.+.+ .+++....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 35789999999999999999997654333 457888888654 34455443 33332211
Q ss_pred --CCCCHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 042728 240 --LNENEFQRAERLHERLKKEKQLLIILDNIW 269 (486)
Q Consensus 240 --~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~ 269 (486)
...+.......+.+.+...+.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 012335566666666664456689999975
No 232
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.29 Score=48.46 Aligned_cols=177 Identities=14% Similarity=0.132 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhccCC---------ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042728 164 MKVFQDVMEALRDDK---------LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDL 234 (486)
Q Consensus 164 ~~~~~~l~~~L~~~~---------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 234 (486)
+..++.|.+++.... -+=-.++||+|.|||++...+++.+. |+..- +.++...+-.+ ++
T Consensus 211 ~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~----ydIyd-LeLt~v~~n~d-Lr------ 278 (457)
T KOG0743|consen 211 ERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN----YDIYD-LELTEVKLDSD-LR------ 278 (457)
T ss_pred HHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC----CceEE-eeeccccCcHH-HH------
Confidence 445555666654321 23456999999999999999998874 55321 22222211111 22
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccccccccC-------------C---CCCcccccccCCCCCcEE
Q 042728 235 GMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLELDKFGI-------------P---TGDVAEKDRKDDQRRCTI 298 (486)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l~~-------------~---~~~~~~~~~~~~~~~s~i 298 (486)
+|...- ..+-+||+.|++..-++..-.. . +-.+...+-..++..--|
T Consensus 279 ---------------~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIi 341 (457)
T KOG0743|consen 279 ---------------HLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERII 341 (457)
T ss_pred ---------------HHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEE
Confidence 222211 3457888888864311100000 0 000111111112222345
Q ss_pred EEEeCchhhhhh-hc---CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHH-hcCC
Q 042728 299 ILTSRKQDLLRI-DM---NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANA-LKTK 373 (486)
Q Consensus 299 lvTtR~~~v~~~-~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~-L~~~ 373 (486)
+.||...+-... .+ .-...|.+.--+.+....|+.++++...+++ +..+|.+...|.-+.=..++.. |.++
T Consensus 342 vFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~----L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 342 VFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHR----LFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred EEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcc----hhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 667766553211 11 2334688999999999999999987533333 3344444444443333444443 3444
No 233
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.79 E-value=0.0076 Score=57.45 Aligned_cols=52 Identities=25% Similarity=0.465 Sum_probs=39.8
Q ss_pred ccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHH-HHHhHccCCCeE
Q 042728 161 DSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVA-KQVMEENLFDKV 212 (486)
Q Consensus 161 ~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~-~~~~~~~~f~~~ 212 (486)
-+|..+..--+++|.++....|.+.|.+|.|||-||.... .+...+..|..+
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Ki 279 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKI 279 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceE
Confidence 4577777777889999999999999999999999997765 333344445543
No 234
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.0081 Score=61.00 Aligned_cols=88 Identities=19% Similarity=0.274 Sum_probs=50.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT-PDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKK 257 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (486)
..+++|+|++|+||||++..++.....+.....+..++.... ....+.+......++.......+.......+ +.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL-~~l~- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLL-ERLR- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHH-HHhc-
Confidence 478999999999999999999877654422344555654322 2233334444444554433223333333333 3343
Q ss_pred CCcEEEEEeCCC
Q 042728 258 EKQLLIILDNIW 269 (486)
Q Consensus 258 ~kr~LlVlDdv~ 269 (486)
+.=+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 34588888874
No 235
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.78 E-value=0.013 Score=58.90 Aligned_cols=88 Identities=19% Similarity=0.184 Sum_probs=52.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKK 257 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (486)
.+++.++|++|+||||++..++........-..+..++..... ...+-+....+.++.+.....+..+....+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC-
Confidence 3689999999999999999988776511123456667654321 12233444455566554433444444444433 32
Q ss_pred CCcEEEEEeCCC
Q 042728 258 EKQLLIILDNIW 269 (486)
Q Consensus 258 ~kr~LlVlDdv~ 269 (486)
..=+|++|..-
T Consensus 299 -~~DlVlIDt~G 309 (424)
T PRK05703 299 -DCDVILIDTAG 309 (424)
T ss_pred -CCCEEEEeCCC
Confidence 34578889763
No 236
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.77 E-value=0.0095 Score=57.81 Aligned_cols=92 Identities=28% Similarity=0.271 Sum_probs=57.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccC----CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCCCH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENL----FDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG---------LNENE 244 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 244 (486)
...++-|+|++|+|||+++.+++........ -..++|++....+++..+.+ +++.++.... ...+.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l~~i~~~~~~~~ 179 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVLDNIHVARAYNS 179 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhhccEEEEeCCCH
Confidence 3468889999999999999999876533211 14789999988888776554 4455543321 01111
Q ss_pred H---HHHHHHHHHHhc-CCcEEEEEeCCCC
Q 042728 245 F---QRAERLHERLKK-EKQLLIILDNIWT 270 (486)
Q Consensus 245 ~---~~~~~l~~~L~~-~kr~LlVlDdv~~ 270 (486)
. .....+...+.. .+--|||+|.+-.
T Consensus 180 ~~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 180 DHQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred HHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 1 223344444443 2445888898753
No 237
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.77 E-value=0.0097 Score=57.57 Aligned_cols=57 Identities=32% Similarity=0.310 Sum_probs=41.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHcc----CCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEEN----LFDKVVMAEVTQTPDHHKIQNKLAFDLGM 236 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 236 (486)
..++-|+|++|+|||+++.+++....... .-..++|++....++...+. ++++.++.
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 46888999999999999999987654210 11379999998888877654 44555543
No 238
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.75 E-value=0.0024 Score=64.09 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=41.4
Q ss_pred cccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCC
Q 042728 158 EAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFD 210 (486)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~ 210 (486)
..++||++.++.+...+..+.. +.|.|++|+|||+||+.+.........|.
T Consensus 20 ~~i~gre~vI~lll~aalag~h--VLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGES--VFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hhccCcHHHHHHHHHHHccCCC--EEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 4689999999999888876554 78999999999999999998765433343
No 239
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.0023 Score=53.77 Aligned_cols=28 Identities=39% Similarity=0.531 Sum_probs=25.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHcc
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEEN 207 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~ 207 (486)
.-|.|.|++|+||||+++.+.+.++..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 4589999999999999999999988764
No 240
>PRK14974 cell division protein FtsY; Provisional
Probab=96.74 E-value=0.025 Score=54.88 Aligned_cols=91 Identities=23% Similarity=0.193 Sum_probs=52.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP--DHHKIQNKLAFDLGMEFG---LNENEFQRAERLH 252 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~ 252 (486)
++.+|.++|++|+||||++..++...... .+ .++.+.. ..+ ...+-+......++.+.. ...+.........
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 46799999999999999999998877654 23 3444442 222 333455666777775432 1223333222222
Q ss_pred HHHhcCCcEEEEEeCCCCc
Q 042728 253 ERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 253 ~~L~~~kr~LlVlDdv~~~ 271 (486)
+.......=++++|.....
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 2222122238889988543
No 241
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.74 E-value=0.0082 Score=64.07 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=61.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG-----LNENEFQRAERLH 252 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 252 (486)
.-+++-|.|++|+|||||+.+++...... -..++|++....++. ..+++++.+.. .+.+.+.....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 34688899999999999998877655433 356799988777774 36677776532 2445566666666
Q ss_pred HHHhcCCcEEEEEeCCCC
Q 042728 253 ERLKKEKQLLIILDNIWT 270 (486)
Q Consensus 253 ~~L~~~kr~LlVlDdv~~ 270 (486)
..+..++.-|||+|.+..
T Consensus 132 ~lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 132 MLIRSGALDIVVIDSVAA 149 (790)
T ss_pred HHhhcCCCeEEEEcchhh
Confidence 666656778999999863
No 242
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.73 E-value=0.077 Score=51.12 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=34.0
Q ss_pred cEEcCCCChHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHcCCChHHH
Q 042728 317 NFQIDALPPKEALQLFEEIVGDSTKI--SAFQSTANEIVERCGGLPVAL 363 (486)
Q Consensus 317 ~~~l~~L~~~e~~~Lf~~~~~~~~~~--~~~~~~~~~i~~~~~GlPlai 363 (486)
++++++++.+|+..++.-+....... ...+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999998877532211 333456677777779999643
No 243
>PRK06547 hypothetical protein; Provisional
Probab=96.73 E-value=0.0025 Score=55.70 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=28.6
Q ss_pred HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 169 DVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 169 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.+...+......+|.|.|++|+||||+|+.+.+..
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444556778899999999999999999998774
No 244
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.71 E-value=0.0045 Score=52.04 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=33.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHH
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNK 229 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 229 (486)
|.|+|++|+|||+||+.+++... ....-+.++...+..+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceee
Confidence 67999999999999999998872 23455688888888776643
No 245
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.70 E-value=0.0025 Score=64.92 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=41.9
Q ss_pred ccccccHHHHHHHHHHHh------ccCCccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 157 FEAFDSRMKVFQDVMEAL------RDDKLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
...++|-++.+++|++.| .....+++.++|++|+||||||+.+.+-...
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 346899999999999988 3345689999999999999999999987754
No 246
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.70 E-value=0.012 Score=53.67 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=28.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP 221 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 221 (486)
+|+|.|.+|+||||+|+.+.........-..+..++...-+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 58999999999999999999887531111234555554444
No 247
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.70 E-value=0.0013 Score=59.64 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 478999999999999999999844
No 248
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.70 E-value=0.014 Score=51.81 Aligned_cols=43 Identities=16% Similarity=0.158 Sum_probs=31.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHH
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQN 228 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 228 (486)
+.|.|++|+|||+|+.++....... =..++|++.... ...+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~~--~~~~~~ 44 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEES--PEELIE 44 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCC--HHHHHH
Confidence 6799999999999999998776543 345778876543 444443
No 249
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.68 E-value=0.1 Score=49.89 Aligned_cols=167 Identities=9% Similarity=0.038 Sum_probs=92.4
Q ss_pred HHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHH--------hHccCCCeEEEEEe-CCCCCHHHHHHHHHHHhCC
Q 042728 167 FQDVMEALRDDK-LNIIGVHGMGGVGKTTIVKQVAKQV--------MEENLFDKVVMAEV-TQTPDHHKIQNKLAFDLGM 236 (486)
Q Consensus 167 ~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~--------~~~~~f~~~~wv~v-s~~~~~~~~~~~i~~~l~~ 236 (486)
++.+.+.+.++. .++..++|..|.||+++|..+.+.. ....|.+.+.++.. +.....+++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 445556665554 4567799999999999999999886 22223323333322 1222332222 33333322
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEEEeC-chhhhhhhcC
Q 042728 237 EFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIILTSR-KQDLLRIDMN 313 (486)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR-~~~v~~~~~~ 313 (486)
.+- .++++=++|+|+++... ..+.+...+.. ...++.+|++|. ...+.....+
T Consensus 84 ~~~----------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEE--------Pp~~t~~il~~~~~~kll~TI~S 139 (299)
T PRK07132 84 SSF----------------VQSQKKILIIKNIEKTSNSLLNALLKTIEE--------PPKDTYFLLTTKNINKVLPTIVS 139 (299)
T ss_pred CCc----------------ccCCceEEEEecccccCHHHHHHHHHHhhC--------CCCCeEEEEEeCChHhChHHHHh
Confidence 210 11356788889987653 23333222322 344666665554 4444432355
Q ss_pred CcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHH
Q 042728 314 SQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALST 365 (486)
Q Consensus 314 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 365 (486)
.+..+++.++++++..+.+... + .+ .+.+..++...+|.--|+..
T Consensus 140 Rc~~~~f~~l~~~~l~~~l~~~-~---~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 140 RCQVFNVKEPDQQKILAKLLSK-N---KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CeEEEECCCCCHHHHHHHHHHc-C---CC---hhHHHHHHHHcCCHHHHHHH
Confidence 6788999999999998887763 1 11 23355566666662234433
No 250
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.67 E-value=0.015 Score=55.05 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=29.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP 221 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 221 (486)
..+.+|+|.|..|+||||+|+.+..-......-..+..++...-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 456799999999999999998887665422111234455544433
No 251
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.66 E-value=0.0027 Score=57.02 Aligned_cols=110 Identities=10% Similarity=0.137 Sum_probs=59.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHH-KIQNKLAFDLGMEFGLNENEFQRAERLHERLKKE 258 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 258 (486)
.+|.|+|+.|+||||++..+....... ....++. +..+.... .-...+..+-.. ..+.......+...+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t-~e~~~E~~~~~~~~~i~q~~v----g~~~~~~~~~i~~aLr~- 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILT-IEDPIEFVHESKRSLINQREV----GLDTLSFENALKAALRQ- 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEE-EcCCccccccCccceeeeccc----CCCccCHHHHHHHHhcC-
Confidence 468999999999999999887776432 2333332 22211100 000011111000 11122344556666664
Q ss_pred CcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeCchhhh
Q 042728 259 KQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLL 308 (486)
Q Consensus 259 kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 308 (486)
.+=++++|++.+.+.+...... ...|..++.|+....+.
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~-----------a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTA-----------AETGHLVMSTLHTNSAA 112 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHH-----------HHcCCEEEEEecCCcHH
Confidence 4669999999876554432111 23355688888766553
No 252
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.66 E-value=0.0068 Score=59.76 Aligned_cols=84 Identities=26% Similarity=0.294 Sum_probs=53.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG-----LNENEFQRAERLHE 253 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 253 (486)
-.++.|.|.+|+|||||+.+++...... -..++|++.... ...+ ..-+..++...+ ...+.+ .+.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le----~I~~ 152 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLE----DILA 152 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHH----HHHH
Confidence 3689999999999999999999877654 356888876543 3332 222445554322 112233 3444
Q ss_pred HHhcCCcEEEEEeCCCCc
Q 042728 254 RLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 254 ~L~~~kr~LlVlDdv~~~ 271 (486)
.+...+.-+||+|.+...
T Consensus 153 ~i~~~~~~lVVIDSIq~l 170 (372)
T cd01121 153 SIEELKPDLVIIDSIQTV 170 (372)
T ss_pred HHHhcCCcEEEEcchHHh
Confidence 444446679999998643
No 253
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.64 E-value=0.017 Score=54.19 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=57.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhC-CCCCCCCCHHHHHHHHHHHHh
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLG-MEFGLNENEFQRAERLHERLK 256 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~~~L~ 256 (486)
.-.++=|+|+.|+||||+|.+++-..... -..++|++....+++..+..-....+. .....+.+.++....+.....
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 34678899999999999999988665443 448899999999988765543333121 111223344443333333332
Q ss_pred cC--CcEEEEEeCCCC
Q 042728 257 KE--KQLLIILDNIWT 270 (486)
Q Consensus 257 ~~--kr~LlVlDdv~~ 270 (486)
.. +--|+|+|.+-.
T Consensus 137 ~~~~~i~LvVVDSvaa 152 (279)
T COG0468 137 SGAEKIDLLVVDSVAA 152 (279)
T ss_pred hccCCCCEEEEecCcc
Confidence 22 356999999854
No 254
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.61 E-value=0.023 Score=53.58 Aligned_cols=90 Identities=20% Similarity=0.252 Sum_probs=51.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC---CCCCCHHHHH-HHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGMEF---GLNENEFQRA-ERLH 252 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~~~-~~l~ 252 (486)
..+++.++|++|+||||++..++...... -..+..++..... ...+-+....+..+.+. ....+..... ..+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~ 148 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQ 148 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH
Confidence 45789999999999999999999877543 2356666654321 22334444555555432 1122333322 3333
Q ss_pred HHHhcCCcEEEEEeCCCC
Q 042728 253 ERLKKEKQLLIILDNIWT 270 (486)
Q Consensus 253 ~~L~~~kr~LlVlDdv~~ 270 (486)
.... +..=++++|-.-.
T Consensus 149 ~~~~-~~~D~ViIDT~G~ 165 (272)
T TIGR00064 149 KAKA-RNIDVVLIDTAGR 165 (272)
T ss_pred HHHH-CCCCEEEEeCCCC
Confidence 3333 2345788888753
No 255
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.59 E-value=0.017 Score=57.85 Aligned_cols=59 Identities=22% Similarity=0.261 Sum_probs=35.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCC
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT-PDHHKIQNKLAFDLGME 237 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~ 237 (486)
.+.++.++|++|+||||.+..++.....+..+ .+..++.... +...+-+.......+.+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp 157 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVP 157 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCc
Confidence 45789999999999999999998876432112 3444444322 12233344444554443
No 256
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.57 E-value=0.003 Score=53.09 Aligned_cols=44 Identities=30% Similarity=0.487 Sum_probs=34.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGME 237 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 237 (486)
+|.|.|++|+||||+|+.++++..-. ++ +.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~----~v---------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK----LV---------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc----ee---------eccHHHHHHHHHcCCC
Confidence 68999999999999999999887532 11 3346888998888765
No 257
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.57 E-value=0.012 Score=58.28 Aligned_cols=85 Identities=20% Similarity=0.242 Sum_probs=46.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ-TPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKK 257 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (486)
..++.++|++|+||||++..++........+ .+..++... .......+...++.++.+.....+ ...+.+.+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~----~~~l~~~l~~ 297 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD----IKKFKETLAR 297 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeehHH----HHHHHHHHHh
Confidence 4689999999999999999998765332122 333343322 122334445555555554321111 2334444443
Q ss_pred CCcEEEEEeCC
Q 042728 258 EKQLLIILDNI 268 (486)
Q Consensus 258 ~kr~LlVlDdv 268 (486)
...=++++|-.
T Consensus 298 ~~~D~VLIDTa 308 (432)
T PRK12724 298 DGSELILIDTA 308 (432)
T ss_pred CCCCEEEEeCC
Confidence 23346888843
No 258
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.063 Score=48.53 Aligned_cols=150 Identities=14% Similarity=0.199 Sum_probs=81.9
Q ss_pred cccHHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHH
Q 042728 160 FDSRMKVFQDVMEALR-------------DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKI 226 (486)
Q Consensus 160 ~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~ 226 (486)
+-|-+..+++|.+.+. -.+++-+.++|++|.|||-||+.|+++- ...|+.+|... +
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-------~c~firvsgse----l 217 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSE----L 217 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechHH----H
Confidence 3355666776666552 1256678899999999999999998653 34566666542 2
Q ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc----------------cccccCCCCCccccccc
Q 042728 227 QNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE----------------LDKFGIPTGDVAEKDRK 290 (486)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~----------------~~~l~~~~~~~~~~~~~ 290 (486)
.+..+ |. -......+.-.....-+-++++|.+++... .-++...+ ...
T Consensus 218 vqk~i---ge-------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql------dgf 281 (404)
T KOG0728|consen 218 VQKYI---GE-------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL------DGF 281 (404)
T ss_pred HHHHh---hh-------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhc------ccc
Confidence 22111 10 011222222222234567888888875410 00010111 111
Q ss_pred CCCCCcEEEEEeCchhhhhhh-c---CCcccEEcCCCChHHHHHHHHHHh
Q 042728 291 DDQRRCTIILTSRKQDLLRID-M---NSQKNFQIDALPPKEALQLFEEIV 336 (486)
Q Consensus 291 ~~~~~s~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~ 336 (486)
...++.+||+.|..-++.... . .-...|+.++-+.+.-.++++-+.
T Consensus 282 eatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 282 EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 245667888877555443211 1 233457788877777777776544
No 259
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.50 E-value=0.0026 Score=52.53 Aligned_cols=22 Identities=50% Similarity=0.895 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~~ 203 (486)
|.|.|.+|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 260
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.48 E-value=0.037 Score=54.10 Aligned_cols=89 Identities=19% Similarity=0.179 Sum_probs=56.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT-PDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLK 256 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 256 (486)
+.++|.++|+.|+||||-...++....-...=..+..++.... ....+-++..++-++.+.....+..+....+... .
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~ 280 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-R 280 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-h
Confidence 4689999999999998655444444431112345666665433 2566677777888888876566666666555443 2
Q ss_pred cCCcEEEEEeCCC
Q 042728 257 KEKQLLIILDNIW 269 (486)
Q Consensus 257 ~~kr~LlVlDdv~ 269 (486)
.+=++.+|-+.
T Consensus 281 --~~d~ILVDTaG 291 (407)
T COG1419 281 --DCDVILVDTAG 291 (407)
T ss_pred --cCCEEEEeCCC
Confidence 22466667664
No 261
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.47 E-value=0.0046 Score=58.09 Aligned_cols=115 Identities=14% Similarity=0.098 Sum_probs=63.2
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEE---eCCCCCHHHHHHHHHHHhCCCCCC-------CCCHH
Q 042728 176 DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAE---VTQTPDHHKIQNKLAFDLGMEFGL-------NENEF 245 (486)
Q Consensus 176 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 245 (486)
......++|+|+.|+|||||.+.+...... ..+.+++. +...... .++......-+.. ..+..
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~~~~r~~v~~~~ 180 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILST---GISQLGLRGKKVGIVDER----SEIAGCVNGVPQHDVGIRTDVLDGC 180 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccCC---CCceEEECCEEeecchhH----HHHHHHhcccccccccccccccccc
Confidence 344568999999999999999999976642 23334431 1111111 2332222111100 00111
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeCchhhh
Q 042728 246 QRAERLHERLKKEKQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLL 308 (486)
Q Consensus 246 ~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 308 (486)
.....+...+....+-++++|.+...+.+..+.... ..|..+|+||....+.
T Consensus 181 ~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~-----------~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 181 PKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL-----------HAGVSIIATAHGRDVE 232 (270)
T ss_pred hHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH-----------hCCCEEEEEechhHHH
Confidence 123334444443467899999987665554442222 2477899999976653
No 262
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.47 E-value=0.0061 Score=56.01 Aligned_cols=88 Identities=17% Similarity=0.302 Sum_probs=55.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC----------------CC-C
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGME----------------FG-L 240 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~----------------~~-~ 240 (486)
...++.|.|++|+|||+|+.+++.....+ .=..++|++...++ ..+.+.+. .++.+ .. .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 44789999999999999999987655332 02457788775543 44444432 33221 00 0
Q ss_pred ---CCCHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 042728 241 ---NENEFQRAERLHERLKKEKQLLIILDNIW 269 (486)
Q Consensus 241 ---~~~~~~~~~~l~~~L~~~kr~LlVlDdv~ 269 (486)
..+.......+.+.++..+...+|+|.+.
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 35677777888777775455799999874
No 263
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.46 E-value=0.0067 Score=63.80 Aligned_cols=77 Identities=10% Similarity=0.164 Sum_probs=58.4
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042728 155 KDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDL 234 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 234 (486)
...+.++|.++.++.|...+.+. +.+.++|++|+||||+|+.+.+.... .+++..+|..- ...+...+++.++.++
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 44667899999999888877655 36889999999999999999977643 24677788654 4446777777777665
Q ss_pred C
Q 042728 235 G 235 (486)
Q Consensus 235 ~ 235 (486)
+
T Consensus 104 G 104 (637)
T PRK13765 104 G 104 (637)
T ss_pred C
Confidence 4
No 264
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.44 E-value=0.055 Score=45.63 Aligned_cols=110 Identities=17% Similarity=0.231 Sum_probs=63.4
Q ss_pred hhhhHHHHHHHhhhhhhHHhHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCcchHhHHHHHHHHHHH
Q 042728 5 VGLAAFSSIVSEGVKSLFKPIIRQISYVFKYQSYIDGLKDQVKQLEHKRERVEIPVHQATQQGDEIYKDVADWLNSVKEF 84 (486)
Q Consensus 5 v~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~L~~~l~~i~~~l~~a~~~~~~~~~~~~~Wl~~vr~~ 84 (486)
+++|+++++++.+...+.....+ ...+ +.-+++|.+.+..|.-.+.+.+.-....+..-+.=++++.+.
T Consensus 6 ~~gaalG~~~~eLlk~v~~~~~k----~~~f-------k~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~ 74 (147)
T PF05659_consen 6 VGGAALGAVFGELLKAVIDASKK----SLSF-------KSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKEL 74 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHhh-------hhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHH
Confidence 44555555555555444444333 2223 344555555555555555555443333333336778888888
Q ss_pred HHHHhhhhhhhHHHHhhhcccCCCCchhHHhHHhHHHHHHHHHHHhHhh
Q 042728 85 TQGAAKSITDDEDRAKKFCFKGSCPNLISRYKLSRQAAKAAEAAASLVG 133 (486)
Q Consensus 85 ayd~ed~lD~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~i~~ 133 (486)
..++++++..|. .....++...++.+++|+++.+.+....+
T Consensus 75 L~~g~~LV~k~s--------k~~r~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 75 LEKGKELVEKCS--------KVRRWNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHHHHHHHHHhc--------cccHHHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 889988886553 11123455667778888888877765543
No 265
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.44 E-value=0.027 Score=53.29 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=37.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFD 233 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 233 (486)
-.++.|.|.+|+||||++.+++.....+ +-..++|++... +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEccc--CHHHHHHHHHHH
Confidence 3578899999999999999998776543 134688887755 344555555444
No 266
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.43 E-value=0.003 Score=56.55 Aligned_cols=26 Identities=42% Similarity=0.699 Sum_probs=23.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
+|+|.|++|+||||+|+.+.......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988754
No 267
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.42 E-value=0.006 Score=56.67 Aligned_cols=64 Identities=20% Similarity=0.395 Sum_probs=48.3
Q ss_pred HHHHHHh--ccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042728 168 QDVMEAL--RDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLA 231 (486)
Q Consensus 168 ~~l~~~L--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (486)
.+|+..+ ..++..+|+|.|.||+|||||.-.+...+..+++=-.++-|.-|.+++--.++.+=.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRi 103 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRI 103 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHh
Confidence 3444444 345778999999999999999999999998776666677777777776666654443
No 268
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.41 E-value=0.023 Score=50.63 Aligned_cols=41 Identities=24% Similarity=0.388 Sum_probs=29.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCC--------CeEEEEEeCCC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLF--------DKVVMAEVTQT 220 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--------~~~~wv~vs~~ 220 (486)
.++.|.|++|+||||++.++.........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 478899999999999999999877643222 36888877665
No 269
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.40 E-value=0.037 Score=50.94 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=31.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT 220 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 220 (486)
.-.++.|.|.+|+|||||+.+++.....+ -..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccCC
Confidence 34689999999999999999987655433 457788876443
No 270
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.012 Score=55.06 Aligned_cols=83 Identities=18% Similarity=0.316 Sum_probs=48.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHc--cCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEE--NLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLK 256 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 256 (486)
-++|.++||+|.|||+|.+.++++..++ +.|....-+.++. ..++......- .......-.+|.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsES------gKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSES------GKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhhh------hhHHHHHHHHHHHHHh
Confidence 3789999999999999999999998654 2333333333322 23333322211 2233444555666665
Q ss_pred cCCc-EEEEEeCCCCc
Q 042728 257 KEKQ-LLIILDNIWTK 271 (486)
Q Consensus 257 ~~kr-~LlVlDdv~~~ 271 (486)
.++. +.+.+|.|.+.
T Consensus 247 d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVESL 262 (423)
T ss_pred CCCcEEEEEeHHHHHH
Confidence 4333 45557888754
No 271
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.39 E-value=0.025 Score=45.91 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=35.0
Q ss_pred cccccHHHHHHHHHHHh----cc---CCccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 158 EAFDSRMKVFQDVMEAL----RD---DKLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 158 ~~~~gR~~~~~~l~~~L----~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
..++|..-..+.+++.+ .+ ..+-|++.+|.+|+|||.+++.+++..-.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~ 79 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYK 79 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHh
Confidence 35677665555555554 33 34568899999999999999999988643
No 272
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.39 E-value=0.0033 Score=53.09 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+|.+.|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 58899999999999999998664
No 273
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.39 E-value=0.027 Score=52.51 Aligned_cols=93 Identities=22% Similarity=0.164 Sum_probs=59.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh--HccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC------CCCCCHHH---
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVM--EENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGMEF------GLNENEFQ--- 246 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~--~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~--- 246 (486)
-+.++|.|-+|+|||+|+..+.++.. .+.+-+.++++-+.+.. +..++..++...=.... ....+...
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 35689999999999999999887754 12234678888888765 56666666655421111 11122111
Q ss_pred ---HHHHHHHHHhc--CCcEEEEEeCCCCc
Q 042728 247 ---RAERLHERLKK--EKQLLIILDNIWTK 271 (486)
Q Consensus 247 ---~~~~l~~~L~~--~kr~LlVlDdv~~~ 271 (486)
....+-+++.. ++++|+++||+-..
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 22345566653 58999999998654
No 274
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.04 Score=58.80 Aligned_cols=88 Identities=18% Similarity=0.198 Sum_probs=49.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ-TPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKK 257 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (486)
..++.++|+.|+||||.+..++...........+..++... .....+-++...+.++.+.....+..+....+. .+.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-ALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-HhcC
Confidence 46899999999999999999987764332223455554432 123445566666666655443334444333332 2321
Q ss_pred CCcEEEEEeCCC
Q 042728 258 EKQLLIILDNIW 269 (486)
Q Consensus 258 ~kr~LlVlDdv~ 269 (486)
+ =++++|-.-
T Consensus 264 -~-D~VLIDTAG 273 (767)
T PRK14723 264 -K-HLVLIDTVG 273 (767)
T ss_pred -C-CEEEEeCCC
Confidence 2 355555543
No 275
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.36 E-value=0.01 Score=51.50 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
-..+.|+|++|.|||||.+.+|...+.
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 357899999999999999999987653
No 276
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.037 Score=55.26 Aligned_cols=88 Identities=19% Similarity=0.210 Sum_probs=51.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ-TPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKK 257 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (486)
..+++++|+.|+||||++..++...........+..+.... .....+-+....+.++.+.....+..+....+ ..+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al-~~l~- 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLML-HELR- 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHH-HHhc-
Confidence 46899999999999999999887643322233444444332 22444445566666676654334444443333 2343
Q ss_pred CCcEEEEEeCCC
Q 042728 258 EKQLLIILDNIW 269 (486)
Q Consensus 258 ~kr~LlVlDdv~ 269 (486)
..-++++|-.-
T Consensus 269 -~~d~VLIDTaG 279 (420)
T PRK14721 269 -GKHMVLIDTVG 279 (420)
T ss_pred -CCCEEEecCCC
Confidence 23466677653
No 277
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.34 E-value=0.0036 Score=45.47 Aligned_cols=23 Identities=43% Similarity=0.754 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+|.|.|.+|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 278
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.33 E-value=0.026 Score=57.19 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=51.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ-TPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKK 257 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (486)
..+++++|+.|+||||++..++.....+.....+..++... .....+-++...+.++.+.....+..+....+ ..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~- 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELR- 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhcc-
Confidence 36899999999999999999998775432222455555432 22444555666666665543222323332222 2233
Q ss_pred CCcEEEEEeCCC
Q 042728 258 EKQLLIILDNIW 269 (486)
Q Consensus 258 ~kr~LlVlDdv~ 269 (486)
....+++|-.-
T Consensus 334 -d~d~VLIDTaG 344 (484)
T PRK06995 334 -NKHIVLIDTIG 344 (484)
T ss_pred -CCCeEEeCCCC
Confidence 23467777764
No 279
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.33 E-value=0.011 Score=54.16 Aligned_cols=61 Identities=16% Similarity=0.333 Sum_probs=38.2
Q ss_pred HHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHH
Q 042728 167 FQDVMEALR--DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQ 227 (486)
Q Consensus 167 ~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 227 (486)
...|++.+. .++..+|+|.|++|+|||||...+......+++=-.++-|.-|.+++--.++
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 344444443 3467899999999999999999999988876444455566556666554444
No 280
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.32 E-value=0.0063 Score=54.35 Aligned_cols=52 Identities=23% Similarity=0.402 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEE
Q 042728 163 RMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAE 216 (486)
Q Consensus 163 R~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 216 (486)
+..+....++.|. ...++.+.|++|+|||.||...+-+.-..+.|+.++++.
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3445555666665 456899999999999999999987776667899888773
No 281
>PRK07667 uridine kinase; Provisional
Probab=96.30 E-value=0.01 Score=53.07 Aligned_cols=39 Identities=23% Similarity=0.556 Sum_probs=29.4
Q ss_pred HHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 168 QDVMEALRD--DKLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 168 ~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
+.|.+.+.. +...+|+|.|.+|+||||+|+.+.......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 344444432 344799999999999999999999887643
No 282
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.30 E-value=0.0041 Score=56.41 Aligned_cols=27 Identities=37% Similarity=0.597 Sum_probs=24.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.+..+|+|.|.+|+|||||++.+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999876
No 283
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.29 E-value=0.0043 Score=67.05 Aligned_cols=195 Identities=14% Similarity=0.142 Sum_probs=87.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH-hHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV-MEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGL---NENEFQRAERLHE 253 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~-~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 253 (486)
+..++.|+|+.|.||||+.+.+.-.. ..+. -++|.+..... ...+..+...++..... ..+.......+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~----G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQS----GIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHh----CCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 34689999999999999999998652 2111 11222211100 00111111111110000 0011111122222
Q ss_pred HHhc-CCcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeCchhhhhhhcCCccc--EEcCCCChHHHHH
Q 042728 254 RLKK-EKQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMNSQKN--FQIDALPPKEALQ 330 (486)
Q Consensus 254 ~L~~-~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~~~~--~~l~~L~~~e~~~ 330 (486)
.+.. .++-|+++|..-.-.+...-......++..+ ...|+.+|+||............... ..+ .++.+ ...
T Consensus 396 il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l---~~~g~~viitTH~~eL~~~~~~~~~v~~~~~-~~d~~-~l~ 470 (771)
T TIGR01069 396 ILSKTTENSLVLFDELGAGTDPDEGSALAISILEYL---LKQNAQVLITTHYKELKALMYNNEGVENASV-LFDEE-TLS 470 (771)
T ss_pred HHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHH---HhcCCEEEEECChHHHHHHhcCCCCeEEeEE-EEcCC-CCc
Confidence 3321 3678999999875422111100000000000 23578899999998764322111111 111 01111 000
Q ss_pred HHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhcCCCHHHHHHHHHHHhc
Q 042728 331 LFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANALKTKELDFWKDALNQLRR 387 (486)
Q Consensus 331 Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~~w~~~l~~l~~ 387 (486)
+...+....+. ...+-.|++++ |+|-.+..-|..+......++..+++.|..
T Consensus 471 -p~Ykl~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 471 -PTYKLLKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred -eEEEECCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11111111111 23466677776 888888888777765445566666665543
No 284
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.008 Score=52.76 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.|.|.|++|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998853
No 285
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.29 E-value=0.0067 Score=51.61 Aligned_cols=36 Identities=25% Similarity=0.402 Sum_probs=28.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEE
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAE 216 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 216 (486)
..+|.|.|.+|+||||||+.+.+.+... -..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEec
Confidence 3579999999999999999999999765 34455553
No 286
>PTZ00301 uridine kinase; Provisional
Probab=96.28 E-value=0.0073 Score=54.56 Aligned_cols=27 Identities=26% Similarity=0.667 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
..+|+|.|.+|+||||||+.+.+....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~ 29 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMA 29 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 468999999999999999999877643
No 287
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.27 E-value=0.031 Score=56.33 Aligned_cols=92 Identities=21% Similarity=0.309 Sum_probs=60.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC------CCCCCHHH-----
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGMEF------GLNENEFQ----- 246 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~----- 246 (486)
-..++|.|.+|+|||||+.++.+..... +-+.++++-+.+.. ...++...+...-.... ....+...
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 3568999999999999999999887654 56788888777655 55566666654321111 11222221
Q ss_pred -HHHHHHHHHhc--CCcEEEEEeCCCCc
Q 042728 247 -RAERLHERLKK--EKQLLIILDNIWTK 271 (486)
Q Consensus 247 -~~~~l~~~L~~--~kr~LlVlDdv~~~ 271 (486)
....+.+++.. ++.+||++|++-..
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 23445566542 58999999999543
No 288
>PRK06762 hypothetical protein; Provisional
Probab=96.26 E-value=0.0042 Score=54.02 Aligned_cols=25 Identities=40% Similarity=0.621 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+.+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999776
No 289
>PRK08233 hypothetical protein; Provisional
Probab=96.25 E-value=0.0041 Score=54.94 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
..+|+|.|.+|+||||||..+.....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999997753
No 290
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.23 E-value=0.0057 Score=57.50 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
+.|.|.|.+|+||||+|+++......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46899999999999999999988765
No 291
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.22 E-value=0.012 Score=49.57 Aligned_cols=39 Identities=18% Similarity=0.375 Sum_probs=29.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ 219 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 219 (486)
++|.|+|+.|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 479999999999999999999998765 355555665554
No 292
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.21 E-value=0.14 Score=48.46 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=30.2
Q ss_pred HHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 166 VFQDVMEALRDDK-LNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 166 ~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.-++|...+.++. .+...++|+.|+||+++|..++...-
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~ll 44 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLIL 44 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHh
Confidence 3456777776655 45677999999999999999987663
No 293
>PF13245 AAA_19: Part of AAA domain
Probab=96.21 E-value=0.02 Score=42.43 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=18.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+.+++.|.|++|.|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34678889999999995555544443
No 294
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.20 E-value=0.068 Score=55.93 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=38.6
Q ss_pred cCccccccHHHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 155 KDFEAFDSRMKVFQDVMEALRD--DKLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.....++|....+.++.+.+.. .....|.|+|..|+|||++|+.+.+...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 4456789998888888777632 2334578999999999999999987643
No 295
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.20 E-value=0.017 Score=59.45 Aligned_cols=88 Identities=16% Similarity=0.277 Sum_probs=59.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---------------CCCC
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEF---------------GLNE 242 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------------~~~~ 242 (486)
.-.++.|.|++|+|||||+.+++.....+ -..+++++..+. ..++...+ +.++.+. +...
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 44789999999999999999999887654 346777765443 44444443 4444321 1123
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 042728 243 NEFQRAERLHERLKKEKQLLIILDNIWT 270 (486)
Q Consensus 243 ~~~~~~~~l~~~L~~~kr~LlVlDdv~~ 270 (486)
+.++....+.+.+...+.-++|+|.+..
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~~ 364 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLSA 364 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 4567778888887765667899999864
No 296
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.19 E-value=0.064 Score=49.76 Aligned_cols=49 Identities=14% Similarity=0.287 Sum_probs=34.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLA 231 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (486)
.++.|.|.+|+|||+++.+++.+...+. =..++|++... +..++...++
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCC--CHHHHHHHHH
Confidence 5789999999999999999987775541 23567776544 3444554443
No 297
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.18 E-value=0.014 Score=61.43 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=53.1
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042728 155 KDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDL 234 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 234 (486)
...+.++|.++.+..+...+.+.. .+.++|++|+||||+++.+.+..... .|..++++. ....+...++..+...+
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~-n~~~~~~~~~~~v~~~~ 90 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYP-NPEDPNMPRIVEVPAGE 90 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEe-CCCCCchHHHHHHHHhh
Confidence 345678999999888888776653 56699999999999999999877543 344344332 23334555566666655
Q ss_pred C
Q 042728 235 G 235 (486)
Q Consensus 235 ~ 235 (486)
+
T Consensus 91 g 91 (608)
T TIGR00764 91 G 91 (608)
T ss_pred c
Confidence 4
No 298
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.18 E-value=0.024 Score=48.25 Aligned_cols=25 Identities=28% Similarity=0.667 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
++.|+|.+|+||||+|+.+......
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999988753
No 299
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.17 E-value=0.026 Score=48.31 Aligned_cols=117 Identities=21% Similarity=0.189 Sum_probs=62.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC---CCCHHHHHHHHHHHh-----CCCCC-CCCCHHH----
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ---TPDHHKIQNKLAFDL-----GMEFG-LNENEFQ---- 246 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~---~~~~~~~~~~i~~~l-----~~~~~-~~~~~~~---- 246 (486)
..|-|++..|.||||+|...+-+.... =..+.++..-. .......++.+- .+ +.... ...+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~--g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH--GYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 468888999999999999988777654 22444543322 334444444331 01 11000 0011111
Q ss_pred ---HHHHHHHHHhcCCcEEEEEeCCCCcccc-----ccccCCCCCcccccccCCCCCcEEEEEeCchhh
Q 042728 247 ---RAERLHERLKKEKQLLIILDNIWTKLEL-----DKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDL 307 (486)
Q Consensus 247 ---~~~~l~~~L~~~kr~LlVlDdv~~~~~~-----~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 307 (486)
......+.+..++-=|||||++-....+ +.+...+. ....+.-||+|.|+.+-
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~--------~rp~~~evIlTGr~~p~ 140 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLK--------AKPEDLELVLTGRNAPK 140 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHH--------cCCCCCEEEEECCCCCH
Confidence 2233344444445569999998644221 12211111 14456789999999763
No 300
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.17 E-value=0.011 Score=60.34 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=51.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeE-EEEEeCCCCC-HHHHHHHHHHHhCCCCCCCCCH------HHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKV-VMAEVTQTPD-HHKIQNKLAFDLGMEFGLNENE------FQRAER 250 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~-~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~~~~------~~~~~~ 250 (486)
-....|+|++|+|||||++.+++..... +.++. +.+-+.+.+. +.++.+.+-..+ +......+. ....-.
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n-~~~~~~ivvLIgERpeEVtdm~rsVkgeV-VasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTN-NPECHLMVVLVDERPEEVTDMQRSVKGEV-IASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEeCchhhHHHHHHhccceE-EEECCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999877543 33433 3555665553 333322220001 000111111 122233
Q ss_pred HHHHHh-cCCcEEEEEeCCCCc
Q 042728 251 LHERLK-KEKQLLIILDNIWTK 271 (486)
Q Consensus 251 l~~~L~-~~kr~LlVlDdv~~~ 271 (486)
+-+++. .++.+||++|++-..
T Consensus 494 ~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHcCCCEEEEEeCchHH
Confidence 344442 478899999998643
No 301
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.16 E-value=0.023 Score=49.31 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..+++|.|++|+|||||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999999775
No 302
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.15 E-value=0.017 Score=58.62 Aligned_cols=83 Identities=25% Similarity=0.315 Sum_probs=52.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG-----LNENEFQRAERLHE 253 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 253 (486)
-.++.|.|.+|+|||||+.+++.....+ -..++|++.... ...+.. -++.++.... ...+.+ .+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~----~i~~ 150 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLE----AILA 150 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHH----HHHH
Confidence 4589999999999999999999877533 346788876543 333322 2455554221 122333 3334
Q ss_pred HHhcCCcEEEEEeCCCC
Q 042728 254 RLKKEKQLLIILDNIWT 270 (486)
Q Consensus 254 ~L~~~kr~LlVlDdv~~ 270 (486)
.+...+.-++|+|.+..
T Consensus 151 ~i~~~~~~lVVIDSIq~ 167 (446)
T PRK11823 151 TIEEEKPDLVVIDSIQT 167 (446)
T ss_pred HHHhhCCCEEEEechhh
Confidence 44434567899999864
No 303
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.15 E-value=0.014 Score=52.41 Aligned_cols=51 Identities=29% Similarity=0.422 Sum_probs=37.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG 239 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 239 (486)
.|+|+|-||+||||+|..++.....++. ..++-|...++++.. .+||...+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~-~~VLvVDaDpd~nL~-------~~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGG-YNVLVVDADPDSNLP-------EALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCC-ceEEEEeCCCCCChH-------HhcCCCCC
Confidence 5899999999999999997777766533 346667777766654 45565543
No 304
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.14 E-value=0.0052 Score=55.65 Aligned_cols=28 Identities=39% Similarity=0.548 Sum_probs=24.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
+...+|+|+|++|+|||||++.+.....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999997754
No 305
>PRK03839 putative kinase; Provisional
Probab=96.12 E-value=0.0052 Score=54.28 Aligned_cols=24 Identities=46% Similarity=0.686 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.|.|.|++|+||||+++.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998864
No 306
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.12 E-value=0.0046 Score=49.41 Aligned_cols=25 Identities=36% Similarity=0.658 Sum_probs=21.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
|-|+|++|+|||+||+.++......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999998887643
No 307
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.11 E-value=0.0057 Score=54.34 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+.++|.|.|++|+||||+++.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998764
No 308
>PRK05439 pantothenate kinase; Provisional
Probab=96.11 E-value=0.068 Score=51.12 Aligned_cols=45 Identities=22% Similarity=0.181 Sum_probs=30.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP 221 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 221 (486)
..+-+|+|.|.+|+||||+|+.+.........-..+.-++...-.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 456789999999999999999988766432112234445544433
No 309
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.10 E-value=0.041 Score=55.17 Aligned_cols=92 Identities=16% Similarity=0.281 Sum_probs=60.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC------CCCCCHHH-----
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGMEF------GLNENEFQ----- 246 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~----- 246 (486)
-+.++|.|.+|+|||+|+.++....... +-+.++|+-+.+.. ...++.+++...=.... ....+...
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~~-~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVGQ-HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 3568999999999999999998876533 34778888887665 55666666654321110 11222211
Q ss_pred -HHHHHHHHHhc--CCcEEEEEeCCCCc
Q 042728 247 -RAERLHERLKK--EKQLLIILDNIWTK 271 (486)
Q Consensus 247 -~~~~l~~~L~~--~kr~LlVlDdv~~~ 271 (486)
..-.+-+++.. ++.+||++||+-..
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 23445666653 68999999998654
No 310
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.10 E-value=0.027 Score=57.18 Aligned_cols=84 Identities=26% Similarity=0.321 Sum_probs=51.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG-----LNENEFQRAERLH 252 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 252 (486)
.-.++.|.|.+|+|||||+.+++...... -..++|++.... ...+.. -+..++...+ ...+. ..+.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~----~~I~ 163 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNW----EQIC 163 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCH----HHHH
Confidence 34689999999999999999998776543 235788876543 333222 2334443221 12233 3344
Q ss_pred HHHhcCCcEEEEEeCCCC
Q 042728 253 ERLKKEKQLLIILDNIWT 270 (486)
Q Consensus 253 ~~L~~~kr~LlVlDdv~~ 270 (486)
..+...+.-++|+|.+..
T Consensus 164 ~~i~~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 164 ANIEEENPQACVIDSIQT 181 (454)
T ss_pred HHHHhcCCcEEEEecchh
Confidence 444444567899999864
No 311
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.10 E-value=0.0068 Score=65.72 Aligned_cols=193 Identities=18% Similarity=0.207 Sum_probs=88.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLN---ENEFQRAERLHER 254 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~ 254 (486)
+.+++.|+|+.+.||||+.+.+.-..-- ...-++|++.... .-.++..|...++...... .+.......+...
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~m---aq~G~~vpa~~~~-~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~I 401 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALM---AKSGLPIPANEPS-EIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRI 401 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHH---HHhCCCcccCCCc-cccccceEEEecCCccchhhchhHHHHHHHHHHHH
Confidence 4568899999999999999998644211 0111122222110 0111111221222111111 1111112222222
Q ss_pred Hhc-CCcEEEEEeCCCCccccc---cccCCCCCcccccccCCCCCcEEEEEeCchhhhhhhcCCccc--EEcCCCChHHH
Q 042728 255 LKK-EKQLLIILDNIWTKLELD---KFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMNSQKN--FQIDALPPKEA 328 (486)
Q Consensus 255 L~~-~kr~LlVlDdv~~~~~~~---~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~~~~--~~l~~L~~~e~ 328 (486)
+.. .++-|+++|..-.-.+.. .+...+ +..+ ...|+.+|+||....+.......... ..+. ++. +.
T Consensus 402 l~~~~~~sLvLlDE~~~GtDp~eg~ala~ai---le~l---~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~-~~ 473 (782)
T PRK00409 402 LEKADKNSLVLFDELGAGTDPDEGAALAISI---LEYL---RKRGAKIIATTHYKELKALMYNREGVENASVE-FDE-ET 473 (782)
T ss_pred HHhCCcCcEEEecCCCCCCCHHHHHHHHHHH---HHHH---HHCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec-Cc
Confidence 221 356899999987542211 111000 0000 23478999999998775422221111 1111 111 11
Q ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhcCCCHHHHHHHHHHHhc
Q 042728 329 LQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANALKTKELDFWKDALNQLRR 387 (486)
Q Consensus 329 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~~w~~~l~~l~~ 387 (486)
.. +...+....+. ...+-.|++.+ |+|-.+..-|.-+.......+..++..|..
T Consensus 474 l~-~~Ykl~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 474 LR-PTYRLLIGIPG---KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred Cc-EEEEEeeCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 00 00001001111 23466777777 888888888877765555566666665544
No 312
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.08 E-value=0.016 Score=58.01 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=35.4
Q ss_pred ccccccHHHHHHHHHHHhcc-------C---------CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALRD-------D---------KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~-------~---------~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...++|.+..++.|...+.. . ..+.+.++|++|+|||+||+.++...
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 34578999988877555411 0 12568899999999999999998765
No 313
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.06 E-value=0.02 Score=52.75 Aligned_cols=123 Identities=16% Similarity=0.155 Sum_probs=67.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC-----CCCHHHHHHHHHHHhCCCCC------CCCCHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ-----TPDHHKIQNKLAFDLGMEFG------LNENEFQ 246 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~~------~~~~~~~ 246 (486)
.-.+++|+|.+|+||||+++.+..-... -.+.++..-.+ .....+-..++++.++.... -.-+-.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 3467999999999999999999876542 22333332111 12233445666666664432 1112222
Q ss_pred HH-HHHHHHHhcCCcEEEEEeCCCCcccc---ccccCCCCCcccccccCCCCCcEEEEEeCchhhhhh
Q 042728 247 RA-ERLHERLKKEKQLLIILDNIWTKLEL---DKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLLRI 310 (486)
Q Consensus 247 ~~-~~l~~~L~~~kr~LlVlDdv~~~~~~---~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~ 310 (486)
.+ -.+.+.|. -++-++|.|..-+..+. .++...+.+ .....|...+..|.+-.+...
T Consensus 115 rQRi~IARALa-l~P~liV~DEpvSaLDvSiqaqIlnLL~d------lq~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 115 RQRIGIARALA-LNPKLIVADEPVSALDVSVQAQILNLLKD------LQEELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhhHHHHHHHh-hCCcEEEecCchhhcchhHHHHHHHHHHH------HHHHhCCeEEEEEEEHHhhhh
Confidence 22 23444555 37889999997654221 111111111 013346667888888777653
No 314
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.06 E-value=0.0082 Score=54.81 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=40.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEE-------eCCCCCHHHH--HHHHHHHhCCCCC
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAE-------VTQTPDHHKI--QNKLAFDLGMEFG 239 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-------vs~~~~~~~~--~~~i~~~l~~~~~ 239 (486)
.+..|.++||+|.||||..+.++.+...+.....++=+. ..-+.++++. .++.+++.++.+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 456788999999999999999999887764433333221 1122344433 5677777765543
No 315
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.06 E-value=0.056 Score=54.37 Aligned_cols=92 Identities=21% Similarity=0.329 Sum_probs=59.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC------CCCCCHHH-----
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGMEF------GLNENEFQ----- 246 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~----- 246 (486)
-+.++|.|.+|+|||||+.++........ -+.++++-+.+.. .+.++.+++...=.... ....+...
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 35689999999999999999987775442 3567777776655 55666666665322110 11222222
Q ss_pred -HHHHHHHHHh--cCCcEEEEEeCCCCc
Q 042728 247 -RAERLHERLK--KEKQLLIILDNIWTK 271 (486)
Q Consensus 247 -~~~~l~~~L~--~~kr~LlVlDdv~~~ 271 (486)
..-.+-+++. .++.+||++|++-..
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 2334556653 368999999998643
No 316
>PRK04040 adenylate kinase; Provisional
Probab=96.02 E-value=0.0064 Score=54.00 Aligned_cols=26 Identities=31% Similarity=0.644 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
..+|+|+|++|+||||+++.+.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 35799999999999999999998874
No 317
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.096 Score=50.25 Aligned_cols=28 Identities=32% Similarity=0.316 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
..+-|.++|++|+|||-||+.++.....
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga 153 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGA 153 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCC
Confidence 4566889999999999999999988654
No 318
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.99 E-value=0.0051 Score=58.00 Aligned_cols=90 Identities=14% Similarity=0.265 Sum_probs=47.4
Q ss_pred HHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHH
Q 042728 168 QDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQR 247 (486)
Q Consensus 168 ~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 247 (486)
..+++.+...+. -+.++|+.|+|||++++......... .| .+.-++.+...+...+.+.+-..+......
T Consensus 23 ~~ll~~l~~~~~-pvLl~G~~GtGKT~li~~~l~~l~~~-~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~------- 92 (272)
T PF12775_consen 23 SYLLDLLLSNGR-PVLLVGPSGTGKTSLIQNFLSSLDSD-KY-LVITINFSAQTTSNQLQKIIESKLEKRRGR------- 92 (272)
T ss_dssp HHHHHHHHHCTE-EEEEESSTTSSHHHHHHHHHHCSTTC-CE-EEEEEES-TTHHHHHHHHCCCTTECECTTE-------
T ss_pred HHHHHHHHHcCC-cEEEECCCCCchhHHHHhhhccCCcc-cc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC-------
Confidence 345555544443 46899999999999999988654322 11 234455555544443332221111110000
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCCc
Q 042728 248 AERLHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 248 ~~~l~~~L~~~kr~LlVlDdv~~~ 271 (486)
...- .++|++++++||+.-.
T Consensus 93 ---~~gP-~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 93 ---VYGP-PGGKKLVLFIDDLNMP 112 (272)
T ss_dssp ---EEEE-ESSSEEEEEEETTT-S
T ss_pred ---CCCC-CCCcEEEEEecccCCC
Confidence 0000 1268899999999643
No 319
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.99 E-value=0.038 Score=53.53 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=26.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEe
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEV 217 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v 217 (486)
+++.|++|+||||+++.+.+.......+ .+.+++.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~-~v~~~~~ 36 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGW-AVAVITY 36 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCC-eEEEEcc
Confidence 6799999999999999999887643222 3445544
No 320
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.98 E-value=0.16 Score=54.88 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=41.1
Q ss_pred ccccccHHHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC
Q 042728 157 FEAFDSRMKVFQDVMEALRD--DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ 219 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 219 (486)
...++|+...+..+.+.+.. ....-|.|+|..|+|||++|+.+.+..... -...+.+++..
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~ 437 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAA 437 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEeccc
Confidence 34688988888777665531 233458899999999999999998765322 22344555443
No 321
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.98 E-value=0.018 Score=56.15 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=49.2
Q ss_pred ccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 159 AFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 159 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
.++|+++.+..+...+..++. +.+.|++|+|||+||+.++..... ...++.+.......+++...
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~~--vll~G~PG~gKT~la~~lA~~l~~-----~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 25 VVVGDEEVIELALLALLAGGH--VLLEGPPGVGKTLLARALARALGL-----PFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeeccHHHHHHHHHHHHcCCC--EEEECCCCccHHHHHHHHHHHhCC-----CeEEEecCCCCCHHHhcCch
Confidence 478888888887776655544 789999999999999999988752 34667777777777665443
No 322
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.95 E-value=0.014 Score=51.67 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=33.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLA 231 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (486)
..+|+|-||=|+||||||+.++++.... +++-.+.+++-......++-
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~~ 51 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDPE 51 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhHH
Confidence 4689999999999999999999988633 33334455554555554443
No 323
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.95 E-value=0.013 Score=55.22 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=36.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP 221 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 221 (486)
.-+++.|+|.+|+|||+++.++....... ...++||+....+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~ 63 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESP 63 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCCH
Confidence 45789999999999999999999888765 7889999887653
No 324
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.94 E-value=0.033 Score=48.46 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=46.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC-Cc
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKE-KQ 260 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~-kr 260 (486)
+.|.|.+|+|||++|.++... ....++++.-...++. ++.+.|..--...+. .....+....+.+.+... +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~-~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPA-HWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCC-CceEeecHHHHHHHHHhcCCC
Confidence 679999999999999999765 1346777776666654 344444332111111 222222233344444321 23
Q ss_pred EEEEEeCCC
Q 042728 261 LLIILDNIW 269 (486)
Q Consensus 261 ~LlVlDdv~ 269 (486)
-.+++|.+-
T Consensus 75 ~~VLIDclt 83 (169)
T cd00544 75 DVVLIDCLT 83 (169)
T ss_pred CEEEEEcHh
Confidence 378999874
No 325
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.94 E-value=0.015 Score=48.05 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=28.9
Q ss_pred HHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 166 VFQDVMEALRD--DKLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 166 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
+..++.+.|.. ....+|.+.|.-|+||||+++.+++....
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 34444444432 23458999999999999999999988643
No 326
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.93 E-value=0.0082 Score=52.53 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...|.|+|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999886
No 327
>PRK00625 shikimate kinase; Provisional
Probab=95.92 E-value=0.007 Score=52.88 Aligned_cols=24 Identities=38% Similarity=0.379 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.|.|+|++|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988763
No 328
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.91 E-value=0.016 Score=48.07 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=41.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKE 258 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 258 (486)
.+-|.|.|.+|+||||++..++.... .-|+++|.-.....+....-+...- .-.+.+.....|-..+.++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~vkEn~l~~gyDE~y~c---~i~DEdkv~D~Le~~m~~G 76 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDLVKENNLYEGYDEEYKC---HILDEDKVLDELEPLMIEG 76 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC-------CceEehhhHHhhhcchhcccccccC---ccccHHHHHHHHHHHHhcC
Confidence 35688999999999999999995543 2366666543333333222111111 1335555666666666643
No 329
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.90 E-value=0.0099 Score=51.64 Aligned_cols=29 Identities=21% Similarity=0.472 Sum_probs=25.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
..++++|+|..|+|||||+..+......+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45789999999999999999999887654
No 330
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.90 E-value=0.018 Score=52.82 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=22.5
Q ss_pred HHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 168 QDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 168 ~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+.+...+.... +..|.|++|.||||++..+....
T Consensus 8 ~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 8 EAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 33444443322 68899999999998887777766
No 331
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.89 E-value=0.03 Score=50.69 Aligned_cols=87 Identities=26% Similarity=0.374 Sum_probs=54.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC------CCCCCCHHHH-----
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGME------FGLNENEFQR----- 247 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~~----- 247 (486)
..++|.|.+|+|||+|+..+.+... -+.++++.+++.. ...++.+++...-... .....+....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 5689999999999999999998863 3455888887664 5566666664431111 0112222111
Q ss_pred -HHHHHHHHh-cCCcEEEEEeCCCC
Q 042728 248 -AERLHERLK-KEKQLLIILDNIWT 270 (486)
Q Consensus 248 -~~~l~~~L~-~~kr~LlVlDdv~~ 270 (486)
.-.+-+++. .++..|+++||+-.
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred cchhhhHHHhhcCCceeehhhhhHH
Confidence 122333333 37899999999853
No 332
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.87 E-value=0.05 Score=50.46 Aligned_cols=89 Identities=17% Similarity=0.201 Sum_probs=49.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhHccC----------CCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC-----------
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVMEENL----------FDKVVMAEVTQTP-DHHKIQNKLAFDLGMEF----------- 238 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~~~~----------f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~----------- 238 (486)
+..|+|++|+|||+|+.+++-....... -..+++++...+. .+..=+..+...++...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 5679999999999999999877543211 2246666655443 23333344444332110
Q ss_pred -C-C---C---CCHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 042728 239 -G-L---N---ENEFQRAERLHERLKKEKQLLIILDNIW 269 (486)
Q Consensus 239 -~-~---~---~~~~~~~~~l~~~L~~~kr~LlVlDdv~ 269 (486)
. . . .........+.+.+...+.-+||+|.+-
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~ 121 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLV 121 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChH
Confidence 0 0 0 1122334445554433466799999653
No 333
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.86 E-value=0.11 Score=50.33 Aligned_cols=39 Identities=31% Similarity=0.614 Sum_probs=30.2
Q ss_pred HHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 168 QDVMEALR--DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 168 ~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
..|.+.+. .++..+|+|.|.+|+|||||+..+.......
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444442 3567899999999999999999998888754
No 334
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.85 E-value=0.013 Score=57.01 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=43.5
Q ss_pred CccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 156 DFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
+...++|.++.+..|...+.++...-+.|.|..|+||||+|+.+++-...
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~ 64 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPE 64 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 45678999999999998888888888889999999999999999877643
No 335
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.83 E-value=0.016 Score=56.20 Aligned_cols=47 Identities=26% Similarity=0.317 Sum_probs=39.9
Q ss_pred ccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...++|.+..+..|+-.+.++...-+.|.|.+|+|||||++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 45689999999888777777767778899999999999999998665
No 336
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.82 E-value=0.022 Score=50.17 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
-.+++|.|+.|+|||||++.++...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4579999999999999999998654
No 337
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.82 E-value=0.0079 Score=53.02 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.+++|+|++|+|||||++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999987753
No 338
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.81 E-value=0.061 Score=53.84 Aligned_cols=90 Identities=16% Similarity=0.224 Sum_probs=55.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC------CCCCCHHH----
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGMEF------GLNENEFQ---- 246 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~---- 246 (486)
.-..++|+|..|+|||||++++++... .+.++++-+++.. .+.++..+.+..-+... ..+.+...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 446789999999999999998886653 3555667676655 44455554544322211 11222211
Q ss_pred --HHHHHHHHHh-cCCcEEEEEeCCCCc
Q 042728 247 --RAERLHERLK-KEKQLLIILDNIWTK 271 (486)
Q Consensus 247 --~~~~l~~~L~-~~kr~LlVlDdv~~~ 271 (486)
..-.+-+++. .++.+|+++||+-..
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 1233445553 378999999999643
No 339
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.069 Score=48.73 Aligned_cols=94 Identities=20% Similarity=0.268 Sum_probs=57.8
Q ss_pred CccccccHHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCC
Q 042728 156 DFEAFDSRMKVFQDVMEALRD-------------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPD 222 (486)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~ 222 (486)
.+..+-|-.+.+++|.+...- +.++-|.++|++|.|||-+|+.|+|+-.. .| +.|-..
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda--cf-----irvigs-- 245 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA--CF-----IRVIGS-- 245 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc--eE-----EeehhH--
Confidence 355566788888888776532 24567889999999999999999987532 13 222111
Q ss_pred HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 042728 223 HHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWT 270 (486)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~ 270 (486)
++.+... + .-......|.+..+.+|-|+++||.++.
T Consensus 246 --elvqkyv---g-------egarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 246 --ELVQKYV---G-------EGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred --HHHHHHh---h-------hhHHHHHHHHHHhcccceEEEEeecccc
Confidence 1111111 1 0112344455555557889999999863
No 340
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.79 E-value=0.0072 Score=53.46 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+|.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998765
No 341
>PF13479 AAA_24: AAA domain
Probab=95.79 E-value=0.038 Score=50.18 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT 220 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 220 (486)
-.+.|+|.+|+||||+|..+ +..+++.....
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g 34 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----------PKPLFIDTENG 34 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence 35789999999999999866 45566666544
No 342
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.77 E-value=0.009 Score=53.43 Aligned_cols=28 Identities=43% Similarity=0.647 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
.+-+|+|.|.+|+||||+|+.+......
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 3468999999999999999999988764
No 343
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.77 E-value=0.053 Score=46.96 Aligned_cols=117 Identities=19% Similarity=0.155 Sum_probs=63.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEE---EEEeCCCCCHHHHHHHHHHHh-----CCC--CCCCCC-----
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVV---MAEVTQTPDHHKIQNKLAFDL-----GME--FGLNEN----- 243 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~---wv~vs~~~~~~~~~~~i~~~l-----~~~--~~~~~~----- 243 (486)
...|-|++..|.||||.|.-.+-+....+ + .++ |+.-.........+..+ .+ +.. ......
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g-~-~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHG-K-KVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCC-C-eEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 35788899999999999999887776543 2 232 33322233444444443 11 111 000111
Q ss_pred -HHHHHHHHHHHHhcCCcEEEEEeCCCCcccc-----ccccCCCCCcccccccCCCCCcEEEEEeCchhh
Q 042728 244 -EFQRAERLHERLKKEKQLLIILDNIWTKLEL-----DKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDL 307 (486)
Q Consensus 244 -~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~-----~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 307 (486)
..+......+.+..++-=|||||.+-....+ +.+...+. ....+.-||+|-|+.+-
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~--------~rp~~~evVlTGR~~p~ 142 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQ--------ERPGHQHVIITGRGCPQ 142 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHH--------hCCCCCEEEEECCCCCH
Confidence 1112333445555455569999998643222 12211111 14457789999998753
No 344
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.76 E-value=0.022 Score=54.75 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=35.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQN 228 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 228 (486)
+++.+.|-||+||||+|...+-....++ ..++-++..+..+..+++.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l~ 48 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVLG 48 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHhC
Confidence 6789999999999999999888776652 3466677666666555554
No 345
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.76 E-value=0.098 Score=52.51 Aligned_cols=92 Identities=21% Similarity=0.314 Sum_probs=59.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC------CCCCCHHH-----
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGMEF------GLNENEFQ----- 246 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~----- 246 (486)
-+.++|.|.+|+|||||+.++....... +-..++++-+.+.. .+.++++++...=.... ....+...
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 3568999999999999999998776543 23467777776654 55667776654321111 11222222
Q ss_pred -HHHHHHHHHhc--CCcEEEEEeCCCCc
Q 042728 247 -RAERLHERLKK--EKQLLIILDNIWTK 271 (486)
Q Consensus 247 -~~~~l~~~L~~--~kr~LlVlDdv~~~ 271 (486)
..-.+-+++.. ++.+||++||+-..
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 23445666643 68999999999654
No 346
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.75 E-value=0.037 Score=54.67 Aligned_cols=49 Identities=29% Similarity=0.242 Sum_probs=38.3
Q ss_pred ccccccHHHHHHHHHHHhccC--------------CccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 157 FEAFDSRMKVFQDVMEALRDD--------------KLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~~--------------~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
...++|.++.++.+.-.+... .++.|.++|++|+|||++|+.++.....
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346889988888876655321 2467899999999999999999988753
No 347
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.75 E-value=0.01 Score=51.53 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
|.|.|.+|+|||||++.+++..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999988854
No 348
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.75 E-value=0.0097 Score=52.27 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 579999999999999999998775
No 349
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.74 E-value=0.017 Score=49.47 Aligned_cols=34 Identities=21% Similarity=0.430 Sum_probs=27.7
Q ss_pred HHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 166 VFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 166 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.++.|.+.+.. ++++++|.+|+|||||...+...
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhh
Confidence 45667777754 78999999999999999998754
No 350
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.74 E-value=0.68 Score=46.89 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=38.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDL 234 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 234 (486)
-.++.|.|.+|+|||++|..++.+...+. -..++|++. ..+..++...++...
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~-g~~v~~fSl--Em~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALRE-GKPVLFFSL--EMSAEQLGERLLASK 246 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhC-CCcEEEEEC--CCCHHHHHHHHHHHH
Confidence 35789999999999999999997765332 234666654 446777777776654
No 351
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.058 Score=55.93 Aligned_cols=174 Identities=15% Similarity=0.137 Sum_probs=92.3
Q ss_pred ccccHHHHHHHHHHHhccC-------------CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHH
Q 042728 159 AFDSRMKVFQDVMEALRDD-------------KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHK 225 (486)
Q Consensus 159 ~~~gR~~~~~~l~~~L~~~-------------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~ 225 (486)
++-|-.+..+-|.+.+.-+ ...-|.++|++|+|||-||..++..... -+++|-.+ +
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~-------~fisvKGP----E 736 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL-------RFISVKGP----E 736 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe-------eEEEecCH----H
Confidence 3445666666666655321 2244889999999999999999876532 24555443 2
Q ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc-------------ccccccCCCCCcccccccCC
Q 042728 226 IQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL-------------ELDKFGIPTGDVAEKDRKDD 292 (486)
Q Consensus 226 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~-------------~~~~l~~~~~~~~~~~~~~~ 292 (486)
++... +| ..++....+.+..+.-++|+|+||.+++.. ..+++...+.. ..+
T Consensus 737 lL~Ky---IG-------aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG------~Eg 800 (952)
T KOG0735|consen 737 LLSKY---IG-------ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDG------AEG 800 (952)
T ss_pred HHHHH---hc-------ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcc------ccc
Confidence 22221 11 123445556666666799999999997641 12333222110 114
Q ss_pred CCCcEEEE-EeCchhhhhhhcCC---cccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChH
Q 042728 293 QRRCTIIL-TSRKQDLLRIDMNS---QKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPV 361 (486)
Q Consensus 293 ~~~s~ilv-TtR~~~v~~~~~~~---~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl 361 (486)
-.|.-|+. |||..-+-...... .+.+.-+.-++.+-.++|.........+. ....+-++.++.|..-
T Consensus 801 l~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~--~vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 801 LDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDT--DVDLECLAQKTDGFTG 871 (952)
T ss_pred cceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCcc--ccchHHHhhhcCCCch
Confidence 45665665 55554332212221 12233334445666677766554211111 1124557777777654
No 352
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.73 E-value=0.0076 Score=54.13 Aligned_cols=23 Identities=43% Similarity=0.796 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+|+|.|++|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998776
No 353
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.70 E-value=0.029 Score=55.54 Aligned_cols=42 Identities=26% Similarity=0.438 Sum_probs=33.4
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 165 KVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 165 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
...+.+++.+.......+.|.|+||+|||+|.+.+.+..+..
T Consensus 8 ~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~ 49 (364)
T PF05970_consen 8 RVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR 49 (364)
T ss_pred HHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc
Confidence 345556666666667789999999999999999999887653
No 354
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.69 E-value=0.035 Score=53.21 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=42.1
Q ss_pred cccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHH
Q 042728 160 FDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQN 228 (486)
Q Consensus 160 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 228 (486)
++=..+....++.++..+ +.|.|.|++|+||||+|+.++...... .+.|+.+...+..++..
T Consensus 47 y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~DliG 108 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRIDLVG 108 (327)
T ss_pred ccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhhcCC
Confidence 333444555666666543 358999999999999999999887532 34566666666555443
No 355
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.69 E-value=0.01 Score=48.35 Aligned_cols=41 Identities=29% Similarity=0.406 Sum_probs=23.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHH
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQ 227 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 227 (486)
|.|.|.+|+||||+|+.++...... |.. |....+..+.++.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~--f~R---Iq~tpdllPsDi~ 42 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS--FKR---IQFTPDLLPSDIL 42 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----EEE---EE--TT--HHHHH
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc--eeE---EEecCCCCcccce
Confidence 6799999999999999999886543 543 3344444444443
No 356
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.68 E-value=0.016 Score=51.10 Aligned_cols=25 Identities=36% Similarity=0.674 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
+|+|.|.+|+||||||+.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988764
No 357
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.68 E-value=0.23 Score=48.04 Aligned_cols=38 Identities=37% Similarity=0.434 Sum_probs=29.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEe
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEV 217 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v 217 (486)
...++.++|++|+||||++..++...... -..+..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~--g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ--GKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCeEEEEec
Confidence 46799999999999999999999887644 223444443
No 358
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.67 E-value=0.0094 Score=50.48 Aligned_cols=24 Identities=42% Similarity=0.668 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
+|.|.|++|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998763
No 359
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.67 E-value=0.013 Score=51.45 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=25.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
...+|+|+|++|+||||+|+.+.......
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34689999999999999999999887543
No 360
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.078 Score=57.32 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=63.5
Q ss_pred ccccHHHHHHHHHHHhccC--------CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 159 AFDSRMKVFQDVMEALRDD--------KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 159 ~~~gR~~~~~~l~~~L~~~--------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
.++|.++.+..|.+.+... ......+.|+.|+|||.||+.++...-.. .+..+-++.|.. .. +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs--e~~~IriDmse~------~e-v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS--EENFIRLDMSEF------QE-V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC--ccceEEechhhh------hh-h
Confidence 4567778888888877431 34567889999999999999999887332 334444444432 22 3
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 042728 231 AFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 271 (486)
.+-.+.++.. . -.+....|.+.++...-.+|+||||+..
T Consensus 634 skligsp~gy-v-G~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 634 SKLIGSPPGY-V-GKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hhccCCCccc-c-cchhHHHHHHHHhcCCceEEEEechhhc
Confidence 3333433321 1 1123346777777644457789999865
No 361
>PRK06851 hypothetical protein; Provisional
Probab=95.67 E-value=0.16 Score=49.70 Aligned_cols=41 Identities=32% Similarity=0.327 Sum_probs=31.3
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEe
Q 042728 176 DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEV 217 (486)
Q Consensus 176 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v 217 (486)
++-.+++.|.|++|+|||||+..++.....+ .++..++-|-
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~-G~~v~~~hC~ 251 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEER-GFDVEVYHCG 251 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeCC
Confidence 3445789999999999999999999998765 3554444443
No 362
>PRK08149 ATP synthase SpaL; Validated
Probab=95.66 E-value=0.03 Score=55.91 Aligned_cols=90 Identities=14% Similarity=0.201 Sum_probs=53.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC------CCCCCHH-----
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGMEF------GLNENEF----- 245 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~----- 245 (486)
.-..++|+|.+|+|||||+..++... ..+.++...+.... +..++..+......... ....+..
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 34678999999999999999887643 23444445555443 55566666665432110 1112211
Q ss_pred -HHHHHHHHHHh-cCCcEEEEEeCCCCc
Q 042728 246 -QRAERLHERLK-KEKQLLIILDNIWTK 271 (486)
Q Consensus 246 -~~~~~l~~~L~-~~kr~LlVlDdv~~~ 271 (486)
.....+.+++. .++++||++||+-..
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 12333445553 378999999998644
No 363
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.66 E-value=0.087 Score=54.77 Aligned_cols=87 Identities=14% Similarity=0.185 Sum_probs=57.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---------------CCCCC
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEF---------------GLNEN 243 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------------~~~~~ 243 (486)
-.++.|.|.+|+|||+|+.+++...... -..++|++.... ...+.+.+ ..++.+. +...+
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~--g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 347 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRR--GERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESYG 347 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCcccCC
Confidence 4688899999999999999998776544 467888877654 44444433 3444321 11223
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 042728 244 EFQRAERLHERLKKEKQLLIILDNIWT 270 (486)
Q Consensus 244 ~~~~~~~l~~~L~~~kr~LlVlDdv~~ 270 (486)
.++....+...+...+.-++|+|.+..
T Consensus 348 ~~~~~~~i~~~i~~~~~~~vVIDslt~ 374 (509)
T PRK09302 348 LEDHLIIIKREIEEFKPSRVAIDPLSA 374 (509)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 455666666666554556899999853
No 364
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.66 E-value=0.043 Score=54.68 Aligned_cols=48 Identities=19% Similarity=0.078 Sum_probs=36.4
Q ss_pred ccccccHHHHHHHHHHHhc-------c----C-------CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 157 FEAFDSRMKVFQDVMEALR-------D----D-------KLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~-------~----~-------~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
...++|.++.++.+...+. . . ....+.++|++|+|||++|+.++....
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 4567899998888866551 1 1 125789999999999999999986653
No 365
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.64 E-value=0.05 Score=54.27 Aligned_cols=90 Identities=16% Similarity=0.258 Sum_probs=55.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC------CCCCCHHH----
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGMEF------GLNENEFQ---- 246 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~---- 246 (486)
.-..++|+|..|+|||||++.+.... ..+.++.+-+++.. .+.++.+.++..-+... ..+.+...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 34679999999999999999888532 24566667776665 44556666544322111 11222211
Q ss_pred --HHHHHHHHHh-cCCcEEEEEeCCCCc
Q 042728 247 --RAERLHERLK-KEKQLLIILDNIWTK 271 (486)
Q Consensus 247 --~~~~l~~~L~-~~kr~LlVlDdv~~~ 271 (486)
..-.+-+++. .++.+||++||+-..
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 1233445553 368999999998644
No 366
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.64 E-value=0.01 Score=54.05 Aligned_cols=123 Identities=16% Similarity=0.168 Sum_probs=58.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH-hHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV-MEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGL---NENEFQRAERLHE 253 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~-~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 253 (486)
...++.|.|+.|.||||+.+.+.-.. ..+ -.+..|..-.. -..+..|...++..... ..+-.....++..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~--~G~~v~a~~~~----~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~ 103 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQ--IGSFVPASSAT----LSIFDSVLTRMGASDSIQHGMSTFMVELSETSH 103 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHh--CCCEEEcCceE----EeccceEEEEecCccccccccchHHHHHHHHHH
Confidence 34678999999999999999988632 221 12222221000 00111111112111111 1122223333444
Q ss_pred HHhc-CCcEEEEEeCCCCccc-cccccCCCCCcccccccCCCCCcEEEEEeCchhhhh
Q 042728 254 RLKK-EKQLLIILDNIWTKLE-LDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLLR 309 (486)
Q Consensus 254 ~L~~-~kr~LlVlDdv~~~~~-~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~ 309 (486)
.+.. .++-|++||+...-.. .+..... ..+...+. ...++.+|++|....++.
T Consensus 104 il~~~~~~sLvllDE~~~gT~~~d~~~i~-~~il~~l~--~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 104 ILSNCTSRSLVILDELGRGTSTHDGIAIA-YATLHYLL--EEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred HHHhCCCCeEEEEccCCCCCChhhHHHHH-HHHHHHHH--hccCCeEEEEcccHHHHH
Confidence 4442 4689999999753211 1100000 00000011 224788999999988764
No 367
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.64 E-value=0.0091 Score=50.89 Aligned_cols=23 Identities=43% Similarity=0.671 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998763
No 368
>PRK06217 hypothetical protein; Validated
Probab=95.64 E-value=0.0091 Score=52.87 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.|.|.|.+|+||||+|+.+.....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998764
No 369
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.64 E-value=0.051 Score=55.98 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=55.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------------------
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG------------------ 239 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------------------ 239 (486)
.-+++.|.|++|+||||||.+++..-..+ .=..++||+..+ +..++.+.+ ..++.+..
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~-~ge~~lyvs~eE--~~~~l~~~~-~~~G~~~~~~~~~g~l~~~~~~~~~~ 95 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH-FDEPGVFVTFEE--SPQDIIKNA-RSFGWDLQKLVDEGKLFILDASPDPE 95 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEec--CHHHHHHHH-HHcCCCHHHHhhcCceEEEecCchhc
Confidence 34789999999999999999997654332 125678888753 334444332 33332110
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 042728 240 -----LNENEFQRAERLHERLKKEKQLLIILDNIW 269 (486)
Q Consensus 240 -----~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~ 269 (486)
...+.......+...+.+.++=.+|+|.+-
T Consensus 96 ~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~ 130 (484)
T TIGR02655 96 GQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVT 130 (484)
T ss_pred cccccccCCHHHHHHHHHHHHHHhCCcEEEEeehh
Confidence 012445666677777766666788999543
No 370
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.62 E-value=0.019 Score=55.68 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=38.3
Q ss_pred CccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 156 DFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+...++|.+..++.+.-.+.+.+..-+.+.|.+|+||||+|+.+..-.
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 355789999999887755544445568899999999999999998765
No 371
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.61 E-value=0.0096 Score=52.62 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 372
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.60 E-value=0.025 Score=53.78 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=43.2
Q ss_pred CccccccHHHHHHH---HHHHhccC--CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCC
Q 042728 156 DFEAFDSRMKVFQD---VMEALRDD--KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFD 210 (486)
Q Consensus 156 ~~~~~~gR~~~~~~---l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~ 210 (486)
..+.|||..+..+. +++++.++ .-+.|.|+|++|.|||.||..+.+.+...-+|-
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 35679997765543 67777665 347899999999999999999999998766664
No 373
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.57 E-value=0.023 Score=53.50 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=31.0
Q ss_pred HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 169 DVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 169 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
...+.+...+..++.|.|.+|+|||||+..+.+.....
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~ 131 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS 131 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 34455556788999999999999999999999887543
No 374
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.56 E-value=0.0088 Score=53.90 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.+++|+|+.|.||||+.+.+...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 68999999999999999999843
No 375
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.54 E-value=0.015 Score=52.57 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=27.5
Q ss_pred HhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 173 ALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 173 ~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.+...++++|+++|+.|+|||||...+.+...
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44556899999999999999999999988753
No 376
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.54 E-value=0.028 Score=54.00 Aligned_cols=49 Identities=29% Similarity=0.395 Sum_probs=38.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNK 229 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 229 (486)
.+++.+.|.||+||||+|...+-.....+ ..++-|+..+..+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 36889999999999999999887777653 45788888777777766654
No 377
>PRK05748 replicative DNA helicase; Provisional
Probab=95.53 E-value=0.82 Score=46.72 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=37.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLG 235 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (486)
-.++.|-|.+|+|||+++.+++.+...+.. ..++++ |-.-+..++...++...+
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~~g-~~v~~f--SlEms~~~l~~R~l~~~~ 256 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATKTD-KNVAIF--SLEMGAESLVMRMLCAEG 256 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHhCC-CeEEEE--eCCCCHHHHHHHHHHHhc
Confidence 357899999999999999999987654322 245555 444566677777765543
No 378
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.52 E-value=0.14 Score=48.07 Aligned_cols=90 Identities=20% Similarity=0.218 Sum_probs=51.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLK 256 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 256 (486)
+..+++++|.+|+||||++..+......+ -..+.+++..... ....-+....+.++.+.....+.......+ +.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~--~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l-~~l~ 150 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRAL-TYFK 150 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHH-HHHH
Confidence 44789999999999999999998776543 2345556554332 222233344444454433223444444333 3333
Q ss_pred c-CCcEEEEEeCCCC
Q 042728 257 K-EKQLLIILDNIWT 270 (486)
Q Consensus 257 ~-~kr~LlVlDdv~~ 270 (486)
. .+.=++++|..-.
T Consensus 151 ~~~~~D~ViIDt~Gr 165 (270)
T PRK06731 151 EEARVDYILIDTAGK 165 (270)
T ss_pred hcCCCCEEEEECCCC
Confidence 2 2346788888753
No 379
>PRK13947 shikimate kinase; Provisional
Probab=95.52 E-value=0.012 Score=51.39 Aligned_cols=24 Identities=42% Similarity=0.479 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.|.|+|++|+||||+++.+++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998864
No 380
>PRK14527 adenylate kinase; Provisional
Probab=95.51 E-value=0.014 Score=52.01 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=24.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
....+|.|+|++|+||||+|+.+++...
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999987763
No 381
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.50 E-value=0.7 Score=43.86 Aligned_cols=137 Identities=18% Similarity=0.191 Sum_probs=74.2
Q ss_pred HHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHc--------------------cCCCeEEEEEeCCCCCH
Q 042728 165 KVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEE--------------------NLFDKVVMAEVTQTPDH 223 (486)
Q Consensus 165 ~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~vs~~~~~ 223 (486)
..++.+...+..++. +...++| |+||+++|..++...--. .|.|. .|+.-...
T Consensus 9 ~~~~~L~~~~~~~rl~hAyLf~G--~~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~-~~i~p~~~--- 82 (290)
T PRK07276 9 KVFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDV-TVIEPQGQ--- 82 (290)
T ss_pred HHHHHHHHHHHcCCcceeeeeeC--CccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCe-eeecCCCC---
Confidence 445666666666654 4567777 589999999888665321 12221 22211000
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCc--cccccccCCCCCcccccccCCCCCcE
Q 042728 224 HKIQNKLAFDLGMEFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTK--LELDKFGIPTGDVAEKDRKDDQRRCT 297 (486)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ 297 (486)
.-.. +.+..+.+.+. .+++-++|+|+++.. ...+.+...+.. ...++.
T Consensus 83 -----------------~I~i-dqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEE--------Pp~~t~ 136 (290)
T PRK07276 83 -----------------VIKT-DTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEE--------PQSEIY 136 (290)
T ss_pred -----------------cCCH-HHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcC--------CCCCeE
Confidence 0111 22223333332 145568999999866 334444333333 444566
Q ss_pred EEEEeCch-hhhhhhcCCcccEEcCCCChHHHHHHHHH
Q 042728 298 IILTSRKQ-DLLRIDMNSQKNFQIDALPPKEALQLFEE 334 (486)
Q Consensus 298 ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~ 334 (486)
+|++|.+. .+.....+....+++.+ +.++..+.+..
T Consensus 137 ~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 137 IFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred EEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 66666554 45443445667788877 67766666653
No 382
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.50 E-value=0.011 Score=53.62 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAK 201 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~ 201 (486)
-..++|+|++|+|||||.+.++-
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999974
No 383
>PRK14530 adenylate kinase; Provisional
Probab=95.50 E-value=0.013 Score=53.33 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+.|.|+|++|+||||+++.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998775
No 384
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.50 E-value=0.12 Score=52.37 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=55.9
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHHHHhH-----ccCCCeEEEEEeCCCCCHHHHHHHHHHHhC-CCCC------CCCCHH
Q 042728 179 LNIIGVHGMGGVGKTTIV-KQVAKQVME-----ENLFDKVVMAEVTQTPDHHKIQNKLAFDLG-MEFG------LNENEF 245 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~-----~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~-~~~~------~~~~~~ 245 (486)
-..++|.|..|+|||+|| ..+.++... .++-..++++.+++..+...-+...++.-+ .... .+.+..
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 356899999999999997 666766532 123457788888887754433444444433 1111 111111
Q ss_pred H------HHHHHHHHHh-cCCcEEEEEeCCCCc
Q 042728 246 Q------RAERLHERLK-KEKQLLIILDNIWTK 271 (486)
Q Consensus 246 ~------~~~~l~~~L~-~~kr~LlVlDdv~~~ 271 (486)
. ....+-+++. +++..|+|+||+-+.
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 1 1233444443 368899999999654
No 385
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=95.48 E-value=0.032 Score=53.39 Aligned_cols=91 Identities=20% Similarity=0.306 Sum_probs=59.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCC------------CCCCCCCHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGM------------EFGLNENEFQ 246 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~------------~~~~~~~~~~ 246 (486)
.-|++.|-+|+|||-|.+++.++.... |-...+|.-++... .-.+++.++.+.--. ++.......-
T Consensus 148 gKiGLFGGAGVGKTVl~~ELI~Nia~~-h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RVal 226 (468)
T COG0055 148 GKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVAL 226 (468)
T ss_pred ceeeeeccCCccceeeHHHHHHHHHHH-cCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeeehh
Confidence 568999999999999999999998764 55667888887654 566788888765211 1110111111
Q ss_pred HHHHHHHHHhc--CCcEEEEEeCCCCc
Q 042728 247 RAERLHERLKK--EKQLLIILDNIWTK 271 (486)
Q Consensus 247 ~~~~l~~~L~~--~kr~LlVlDdv~~~ 271 (486)
..-...++++. ++.+|+++||+...
T Consensus 227 tGlT~AEyfRD~~gqdVLlFIDNIfRf 253 (468)
T COG0055 227 TGLTMAEYFRDEEGQDVLLFIDNIFRF 253 (468)
T ss_pred hhhhHHHHhhcccCCeEEEEehhhhHH
Confidence 11223344442 57899999999754
No 386
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.48 E-value=0.082 Score=48.44 Aligned_cols=40 Identities=28% Similarity=0.254 Sum_probs=31.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT 220 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 220 (486)
..++.|.|.+|+|||+++.+++.....+ =..++|++....
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~~ 55 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEER 55 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCC
Confidence 4688999999999999999998765443 356778877653
No 387
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.46 E-value=0.011 Score=52.03 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
++|+|+|++|+|||||++.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57899999999999999999874
No 388
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.45 E-value=0.017 Score=51.06 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=27.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEE
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAE 216 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 216 (486)
.+++.|+|++|+|||||+..+....... |...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~--~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDK--FGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTT--EEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccc--cccceeec
Confidence 4689999999999999999999876433 65444443
No 389
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.45 E-value=0.038 Score=48.14 Aligned_cols=81 Identities=19% Similarity=0.180 Sum_probs=42.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHHHHHhc
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG---LNENEFQRAERLHERLKK 257 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~L~~ 257 (486)
++.|.|.+|+||||+|..+...... .++++.-.... ..+..+.|......... .-+...++...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 6899999999999999999866421 23444433333 33444554333221111 111122233333332332
Q ss_pred CCcEEEEEeCCC
Q 042728 258 EKQLLIILDNIW 269 (486)
Q Consensus 258 ~kr~LlVlDdv~ 269 (486)
.-++++|.+.
T Consensus 77 --~~~VlID~Lt 86 (170)
T PRK05800 77 --GRCVLVDCLT 86 (170)
T ss_pred --CCEEEehhHH
Confidence 2378888874
No 390
>PRK05973 replicative DNA helicase; Provisional
Probab=95.45 E-value=0.054 Score=49.73 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=34.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
-.++.|.|.+|+|||+++.+++.....+ -..+++++.... ..++...+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCC--HHHHHHHH
Confidence 3578999999999999999998776543 345777766554 34444443
No 391
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.43 E-value=0.025 Score=50.82 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=25.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
+...+|.|+|++|+||||||+.+......
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999999987744
No 392
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.43 E-value=0.021 Score=55.09 Aligned_cols=53 Identities=23% Similarity=0.363 Sum_probs=38.2
Q ss_pred ccccccHHHHHHH---HHHHhccCC--ccEEEEEcCCCCcHHHHHHHHHHHHhHccCC
Q 042728 157 FEAFDSRMKVFQD---VMEALRDDK--LNIIGVHGMGGVGKTTIVKQVAKQVMEENLF 209 (486)
Q Consensus 157 ~~~~~gR~~~~~~---l~~~L~~~~--~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f 209 (486)
...+||..+..+. +++++.+.. -+.|.|.|++|.|||+||..+.+.+..+-+|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 4689998765553 567776654 4789999999999999999999998766444
No 393
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.85 Score=41.74 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=38.2
Q ss_pred cCccccccHHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 155 KDFEAFDSRMKVFQDVMEALRD-------------DKLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..+..+-|-+..+++|++.+-- ..++-+..+|++|.|||-+|+..+.+-
T Consensus 168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 3456677889999999988721 245668899999999999999887654
No 394
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.43 E-value=0.012 Score=50.18 Aligned_cols=20 Identities=45% Similarity=0.753 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVA 200 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~ 200 (486)
.|.|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 395
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.42 E-value=0.07 Score=53.39 Aligned_cols=90 Identities=17% Similarity=0.294 Sum_probs=55.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC------CCCCCHHHH---
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGMEF------GLNENEFQR--- 247 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~~--- 247 (486)
.-..++|.|.+|+|||||.+.+++... .+.++++-+.+.. .+.++.+..+..-+... ....+....
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 446799999999999999999987642 4567777777665 44555544333211111 112222211
Q ss_pred ---HHHHHHHHh-cCCcEEEEEeCCCCc
Q 042728 248 ---AERLHERLK-KEKQLLIILDNIWTK 271 (486)
Q Consensus 248 ---~~~l~~~L~-~~kr~LlVlDdv~~~ 271 (486)
.-.+-+++. .++++||++||+-..
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 233445553 378999999999644
No 396
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.42 E-value=0.011 Score=53.34 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=58.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC---HHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNEN---EFQRAERLHER 254 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~l~~~ 254 (486)
...++.|.|+.|.||||+.+.+....--. +. -+++.... ..-.+++.|...++........ ......++...
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la-~~--G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~i 102 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMA-QI--GCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYI 102 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHH-Hc--CCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHH
Confidence 34789999999999999999887443211 01 11221111 1112333344333332211111 11111122222
Q ss_pred Hh-cCCcEEEEEeCCCCcccc-------ccccCCCCCcccccccCCCCCcEEEEEeCchhhhh
Q 042728 255 LK-KEKQLLIILDNIWTKLEL-------DKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLLR 309 (486)
Q Consensus 255 L~-~~kr~LlVlDdv~~~~~~-------~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~ 309 (486)
+. ..++-|+++|+...-.+. ..+...+ ...++.+|++|.....+.
T Consensus 103 l~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l----------~~~~~~~i~~TH~~~l~~ 155 (204)
T cd03282 103 LDYADGDSLVLIDELGRGTSSADGFAISLAILECL----------IKKESTVFFATHFRDIAA 155 (204)
T ss_pred HHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHH----------HhcCCEEEEECChHHHHH
Confidence 22 135789999998542111 1111111 233788999999988765
No 397
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.42 E-value=0.034 Score=47.68 Aligned_cols=33 Identities=27% Similarity=0.527 Sum_probs=27.9
Q ss_pred hccCCccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 174 LRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 174 L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
+..++..+|-+.|.+|.||||+|..+...+...
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 334566799999999999999999999998665
No 398
>PRK14529 adenylate kinase; Provisional
Probab=95.40 E-value=0.065 Score=48.75 Aligned_cols=84 Identities=17% Similarity=0.068 Sum_probs=46.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhHccCCCe--EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQVMEENLFDK--VVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEK 259 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~--~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (486)
|.|.|++|+||||+++.+....... +.+. .+.-.+..........+.++..-. ..+.+-....+.+.+.+..
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G~-----lvpdei~~~lv~~~l~~~~ 76 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRGD-----LVPDDITIPMILETLKQDG 76 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhccC-----cchHHHHHHHHHHHHhccC
Confidence 7899999999999999999877432 2211 111112222223333334433211 2233344555666665422
Q ss_pred cEEEEEeCCCCc
Q 042728 260 QLLIILDNIWTK 271 (486)
Q Consensus 260 r~LlVlDdv~~~ 271 (486)
.-=+|||+.-..
T Consensus 77 ~~g~iLDGfPRt 88 (223)
T PRK14529 77 KNGWLLDGFPRN 88 (223)
T ss_pred CCcEEEeCCCCC
Confidence 345889998654
No 399
>PRK13949 shikimate kinase; Provisional
Probab=95.40 E-value=0.015 Score=50.79 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.|.|+|++|+||||+++.+++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 400
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.39 E-value=0.013 Score=52.92 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.-.+++|+|.+|+|||||++.++--
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 3457999999999999999999743
No 401
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.39 E-value=0.032 Score=53.66 Aligned_cols=82 Identities=12% Similarity=0.279 Sum_probs=56.5
Q ss_pred cccccHHHHHHHHHHHhcc------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEE----eCCCC---CHH
Q 042728 158 EAFDSRMKVFQDVMEALRD------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAE----VTQTP---DHH 224 (486)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~----vs~~~---~~~ 224 (486)
..|+|-++.+++|++.+.. ..-+++.++|+.|.|||||+..+.+-... | .+|.- +.+.+ =+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~---y--~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE---Y--PIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe---E--EEEEecCCccccChhhhCCH
Confidence 4799999999999998843 35689999999999999999999887754 3 33332 11111 134
Q ss_pred HHHHHHHHHhCCCCCCCCCH
Q 042728 225 KIQNKLAFDLGMEFGLNENE 244 (486)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~ 244 (486)
++-..+.+.++.......++
T Consensus 136 ~~r~~~~~~~~~~i~g~l~p 155 (358)
T PF08298_consen 136 ELRREFEDELGIRIEGELCP 155 (358)
T ss_pred hHHHHHHHHhCcccCCCcCH
Confidence 55566666777654433333
No 402
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.39 E-value=0.056 Score=48.26 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
+|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988864
No 403
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.39 E-value=0.056 Score=48.40 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=27.1
Q ss_pred HHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 172 EALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 172 ~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
..+...+-+++.|.|++|+||||++..+.......
T Consensus 11 ~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 11 RAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 33333445788899999999999999998877664
No 404
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.37 E-value=0.014 Score=52.61 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..+|+|+|++|+|||||++.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4679999999999999999999764
No 405
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.37 E-value=0.055 Score=53.55 Aligned_cols=48 Identities=29% Similarity=0.239 Sum_probs=38.4
Q ss_pred ccccccHHHHHHHHHHHhccC--------------CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 157 FEAFDSRMKVFQDVMEALRDD--------------KLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~~--------------~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
...++|.++.++.+..++... ..+.|.++|++|+|||+||+.+.....
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~ 75 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 456889999988888777320 146789999999999999999998764
No 406
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.37 E-value=0.0076 Score=53.46 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
++.|+|+.|.||||+.+.+.-.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999843
No 407
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.36 E-value=0.072 Score=49.68 Aligned_cols=99 Identities=18% Similarity=0.270 Sum_probs=58.1
Q ss_pred ccccHHHHHHHHHHHhc----c---CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042728 159 AFDSRMKVFQDVMEALR----D---DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLA 231 (486)
Q Consensus 159 ~~~gR~~~~~~l~~~L~----~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (486)
.++|..-..+.++..+. + ..+=+++.+|.+|+||...++.++++....+--. .......
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S--------------~~V~~fv 148 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRS--------------PFVHHFV 148 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccc--------------hhHHHhh
Confidence 45666555555555553 3 2456899999999999999999998875431100 0111111
Q ss_pred HHhCCCCC--CCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 042728 232 FDLGMEFG--LNENEFQRAERLHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 232 ~~l~~~~~--~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 271 (486)
..+.-+.. ...-.+++...++..++.-+|-|+|||+++..
T Consensus 149 at~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 149 ATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 11111111 01112344555555555567899999999876
No 408
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.35 E-value=0.016 Score=47.08 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
|.|+|..|+|||||.+.+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999986543
No 409
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.34 E-value=0.016 Score=49.60 Aligned_cols=22 Identities=45% Similarity=0.593 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~~ 203 (486)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998776
No 410
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.32 E-value=0.012 Score=50.89 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~~ 203 (486)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998775
No 411
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.32 E-value=0.013 Score=49.10 Aligned_cols=22 Identities=36% Similarity=0.661 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~~ 203 (486)
|+|+|++|+|||||++.+....
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999998764
No 412
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.31 E-value=0.18 Score=58.42 Aligned_cols=27 Identities=30% Similarity=0.252 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
++=|.++|++|+|||.||+.++.+...
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 456889999999999999999987643
No 413
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.30 E-value=0.016 Score=45.91 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVA 200 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~ 200 (486)
-..++|+|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3578999999999999999976
No 414
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.29 E-value=0.016 Score=51.38 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998753
No 415
>COG4240 Predicted kinase [General function prediction only]
Probab=95.29 E-value=0.12 Score=46.22 Aligned_cols=58 Identities=19% Similarity=0.312 Sum_probs=43.4
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042728 176 DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDL 234 (486)
Q Consensus 176 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 234 (486)
.+++-+++|.|+-|+||||++..+++....++- ..+...++..-+-...-...++++.
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~ 104 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQV 104 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhc
Confidence 356778999999999999999999999987743 4677777766554444455555554
No 416
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.28 E-value=0.049 Score=54.60 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=49.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHh-----CCCCCCCCCHHH------H
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDL-----GMEFGLNENEFQ------R 247 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l-----~~~~~~~~~~~~------~ 247 (486)
-..++|+|.+|+|||||++.+..... ...++++..-....++.++....+... ..-.....+... .
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 35799999999999999988765432 122444443323445554444443332 111111222211 1
Q ss_pred HHHHHHHHh-cCCcEEEEEeCCCCc
Q 042728 248 AERLHERLK-KEKQLLIILDNIWTK 271 (486)
Q Consensus 248 ~~~l~~~L~-~~kr~LlVlDdv~~~ 271 (486)
...+-+++. .++.+|+++||+-..
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHHH
Confidence 233444443 368899999998643
No 417
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.27 E-value=0.078 Score=55.12 Aligned_cols=89 Identities=19% Similarity=0.165 Sum_probs=55.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------------------
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG------------------ 239 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------------------ 239 (486)
.-+++.|.|.+|+|||+|+.++......+ +-..++|++.... ..++.+.+. .++.+..
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~-~ge~~lyis~ee~--~~~i~~~~~-~~g~d~~~~~~~g~l~~~~~~~~~~ 105 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKR-FDEPGVFVTFEES--PEDIIRNVA-SFGWDLQKLIDEGKLFILDASPDPS 105 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCEEEEEccCC--HHHHHHHHH-HcCCCHHHHhhCCeEEEEecCcccc
Confidence 34789999999999999999988665443 1346788877664 334444432 2332100
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 042728 240 -----LNENEFQRAERLHERLKKEKQLLIILDNIWT 270 (486)
Q Consensus 240 -----~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~ 270 (486)
...+.+.....+.+.....+.-.+|+|.+..
T Consensus 106 ~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~ 141 (509)
T PRK09302 106 EQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEA 141 (509)
T ss_pred cccccccccHHHHHHHHHHHHHhhCCCEEEECCHHH
Confidence 0113345556666666544556799999864
No 418
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.27 E-value=0.015 Score=51.56 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.+++|+|++|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999997653
No 419
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.27 Score=51.03 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=37.2
Q ss_pred CccccccHHHHHH---HHHHHhccCC---------ccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 156 DFEAFDSRMKVFQ---DVMEALRDDK---------LNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 156 ~~~~~~gR~~~~~---~l~~~L~~~~---------~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
...+.-|.++..+ ++++.|.++. ++=+.++|++|.|||.||+.++....+.
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP 210 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP 210 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC
Confidence 3455678766555 5566666542 4568899999999999999999877654
No 420
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.26 E-value=0.079 Score=49.49 Aligned_cols=95 Identities=17% Similarity=0.127 Sum_probs=54.2
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHHHHhHccCCCeE-EEEEeCCCC-CHHHHHHHHHHHhCCC------CCCCCCHHH---
Q 042728 179 LNIIGVHGMGGVGKTTIV-KQVAKQVMEENLFDKV-VMAEVTQTP-DHHKIQNKLAFDLGME------FGLNENEFQ--- 246 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~--- 246 (486)
-+.++|.|.+|+|||+|| ..+.+.. +-+.+ +++-+.+.. ...++.+++...-... .....+...
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 356899999999999996 5455432 23444 667776664 5566666665432111 011122211
Q ss_pred ---HHHHHHHHHh-cCCcEEEEEeCCCCc-cccccc
Q 042728 247 ---RAERLHERLK-KEKQLLIILDNIWTK-LELDKF 277 (486)
Q Consensus 247 ---~~~~l~~~L~-~~kr~LlVlDdv~~~-~~~~~l 277 (486)
..-.+-+++. .++.+||++||+-.. ..++++
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 1233444443 368899999999654 334443
No 421
>PHA02244 ATPase-like protein
Probab=95.24 E-value=0.055 Score=52.65 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=26.7
Q ss_pred HHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 167 FQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 167 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
...+..++..+. -|.|+|++|+|||+||+.+++...
T Consensus 109 ~~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 109 TADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred HHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhC
Confidence 345555554443 367899999999999999998753
No 422
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.23 E-value=0.02 Score=49.11 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
+++|+|+.|+|||||+..+....+.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999988654
No 423
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.22 E-value=0.066 Score=47.83 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=24.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
..|+|.|..|+||||+++.+.+.....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~ 30 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQEN 30 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999887654
No 424
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.22 E-value=0.14 Score=51.72 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=58.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCC--eEEEEEeCCCC-CHHHHHHHHHHHhCCCC------CCCCCHH----
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFD--KVVMAEVTQTP-DHHKIQNKLAFDLGMEF------GLNENEF---- 245 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~---- 245 (486)
-+.++|.|..|+|||||+.++.+.....+.+. .++++.+++.. .+.++++.+...=.... ..+.+..
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 35689999999999999999988764321111 56677776554 55666666654322111 1111111
Q ss_pred --HHHHHHHHHHh--cCCcEEEEEeCCCCc
Q 042728 246 --QRAERLHERLK--KEKQLLIILDNIWTK 271 (486)
Q Consensus 246 --~~~~~l~~~L~--~~kr~LlVlDdv~~~ 271 (486)
-....+-+++. +++++||++||+-..
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 12344667776 478999999998643
No 425
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.21 E-value=0.031 Score=53.03 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=29.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT 220 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 220 (486)
+.|+|+|-||+||||++..++.....++ + .++-+.....
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G-~-~VlliD~D~q 39 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG-K-KVMIVGCDPK 39 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEeCCCC
Confidence 4689999999999999999998887653 2 4555555433
No 426
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.20 E-value=0.17 Score=52.36 Aligned_cols=121 Identities=18% Similarity=0.153 Sum_probs=63.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHc-c-----CCCeEEEEEeCC-----C----------C-C-HHHHHHHHHHHhC
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEE-N-----LFDKVVMAEVTQ-----T----------P-D-HHKIQNKLAFDLG 235 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~-----~f~~~~wv~vs~-----~----------~-~-~~~~~~~i~~~l~ 235 (486)
-..|+|+|+.|+|||||.+.+....... + .--.+.|+.-.. . + . ...-.+..+..++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 3569999999999999999997655321 0 011122332111 0 0 1 1344455555555
Q ss_pred CCCCC------CCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccccc---cccCCCCCcccccccCCCCCcEEEEEeCchh
Q 042728 236 MEFGL------NENEFQRAERLHERLKKEKQLLIILDNIWTKLELD---KFGIPTGDVAEKDRKDDQRRCTIILTSRKQD 306 (486)
Q Consensus 236 ~~~~~------~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~---~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 306 (486)
.+.+. .-+-.+...-..-.+.-.++-+||||.--+.-+.+ .+...+. .-.|+ ||+.|.+..
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~---------~f~Gt-vl~VSHDr~ 497 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALL---------DFEGT-VLLVSHDRY 497 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHH---------hCCCe-EEEEeCCHH
Confidence 44331 11222333333333333477899999887653332 2222221 23355 888898887
Q ss_pred hhh
Q 042728 307 LLR 309 (486)
Q Consensus 307 v~~ 309 (486)
...
T Consensus 498 Fl~ 500 (530)
T COG0488 498 FLD 500 (530)
T ss_pred HHH
Confidence 654
No 427
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.19 E-value=0.02 Score=50.13 Aligned_cols=24 Identities=42% Similarity=0.468 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..|.|+|+.|+||||+++.+....
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 468999999999999999999875
No 428
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.17 E-value=0.02 Score=51.13 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..+|.|.|.+|+||||+|+.++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998874
No 429
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.17 E-value=0.023 Score=48.62 Aligned_cols=35 Identities=23% Similarity=0.564 Sum_probs=28.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEE
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMA 215 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 215 (486)
.++++|+|..|+|||||...+....+.+++ .+.-|
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~--rVa~i 36 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGY--RVATV 36 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCc--EEEEE
Confidence 478999999999999999999999987632 34444
No 430
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.14 E-value=0.056 Score=48.40 Aligned_cols=119 Identities=18% Similarity=0.144 Sum_probs=63.8
Q ss_pred HHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHc-cCCCe--EEEEEeCCCCCHHHHHHHHHHHhCCCCC-------
Q 042728 170 VMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEE-NLFDK--VVMAEVTQTPDHHKIQNKLAFDLGMEFG------- 239 (486)
Q Consensus 170 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~--~~wv~vs~~~~~~~~~~~i~~~l~~~~~------- 239 (486)
+...|-+.+-.-..|.|++|+|||||.+.++.-.... +.|-+ +.-+.-+. +|+..+...+.
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers---------EIag~~~gvpq~~~g~R~ 198 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS---------EIAGCLNGVPQHGRGRRM 198 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc---------hhhccccCCchhhhhhhh
Confidence 3333333344447799999999999999999877543 22322 22222111 12221111100
Q ss_pred CCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeCchhhh
Q 042728 240 LNENEFQRAERLHERLKKEKQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLL 308 (486)
Q Consensus 240 ~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 308 (486)
.-.+......-+.....+-.+=++|+|.+-..++-..+... .+.|.+++.|..-..+.
T Consensus 199 dVld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta-----------~~~GVkli~TaHG~~ie 256 (308)
T COG3854 199 DVLDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTA-----------LHAGVKLITTAHGNGIE 256 (308)
T ss_pred hhcccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHH-----------HhcCcEEEEeeccccHH
Confidence 00111112233333344445679999999887665555444 44588888877655443
No 431
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=95.13 E-value=0.3 Score=48.64 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=62.1
Q ss_pred cccHHHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-------CHHHHHHH
Q 042728 160 FDSRMKVFQDVMEALR---DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-------DHHKIQNK 229 (486)
Q Consensus 160 ~~gR~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-------~~~~~~~~ 229 (486)
-|||+.+++.|.+.|. +++...-.|.|.=|.|||.+.+.+.+....++ | .+..+.+|+.. ....++++
T Consensus 27 ~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~~~~-f-vvs~v~ls~e~~lh~~~g~~~~~Yr~ 104 (416)
T PF10923_consen 27 AVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERALEKG-F-VVSEVDLSPERPLHGTGGQLEALYRE 104 (416)
T ss_pred eechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHHHHcC-C-EEEEEecCCCcccccccccHHHHHHH
Confidence 4899999999888774 56777889999999999999999998887652 3 46677777643 45578999
Q ss_pred HHHHhCCCCC
Q 042728 230 LAFDLGMEFG 239 (486)
Q Consensus 230 i~~~l~~~~~ 239 (486)
|++.|.....
T Consensus 105 l~~nL~t~~~ 114 (416)
T PF10923_consen 105 LMRNLSTKTK 114 (416)
T ss_pred HHHhcCCCCC
Confidence 9999877654
No 432
>PLN02165 adenylate isopentenyltransferase
Probab=95.13 E-value=0.026 Score=54.17 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=24.6
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 176 DDKLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 176 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.....+++|+|+.|+||||||..++....
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 44556899999999999999999987753
No 433
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.16 Score=47.08 Aligned_cols=53 Identities=21% Similarity=0.234 Sum_probs=41.1
Q ss_pred ccccCccccccHHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRD-------------DKLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.|...+.++-|-+..+++|.+...- ..++=|.++|.+|.|||-||+.|+|.-.
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS 244 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS 244 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc
Confidence 3444566777889999998887631 1456678999999999999999998754
No 434
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.12 E-value=0.15 Score=51.10 Aligned_cols=93 Identities=20% Similarity=0.165 Sum_probs=59.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhH-----------ccCCCeEEEEEeCCCCCHHHHHHHHHHHhC-CCC------CC
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVME-----------ENLFDKVVMAEVTQTPDHHKIQNKLAFDLG-MEF------GL 240 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~-----------~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~-~~~------~~ 240 (486)
-+.++|.|-+|+|||||+.++.++... ++.-..++++.+++.....+.+...+..-+ ... ..
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 356899999999999999999877641 001115677788888766666666666544 211 11
Q ss_pred CCCHHH------HHHHHHHHHh--cCCcEEEEEeCCCCc
Q 042728 241 NENEFQ------RAERLHERLK--KEKQLLIILDNIWTK 271 (486)
Q Consensus 241 ~~~~~~------~~~~l~~~L~--~~kr~LlVlDdv~~~ 271 (486)
..+... ....+-+++. .++.+||++||+-..
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 121111 2234566666 368999999999543
No 435
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.09 E-value=0.021 Score=51.65 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
..+.|+|+|++|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5678999999999999999998744
No 436
>PRK13975 thymidylate kinase; Provisional
Probab=95.08 E-value=0.021 Score=51.05 Aligned_cols=25 Identities=36% Similarity=0.520 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
..|+|.|+.|+||||+++.+.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998875
No 437
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.08 E-value=0.023 Score=49.91 Aligned_cols=27 Identities=41% Similarity=0.601 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
+.|.+.|.+|+||||+|+++++.++.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 468899999999999999999888765
No 438
>PRK13695 putative NTPase; Provisional
Probab=95.06 E-value=0.038 Score=48.45 Aligned_cols=34 Identities=38% Similarity=0.484 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEE
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMA 215 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 215 (486)
.++|+|.+|+|||||++.+++..... .+...-|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~-G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEE-GYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 47899999999999999998876543 24433344
No 439
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.01 E-value=0.021 Score=50.70 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.-.+++|+|++|+|||||.+.+..-.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 34689999999999999999886443
No 440
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.01 E-value=0.03 Score=51.67 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=23.7
Q ss_pred EEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC
Q 042728 184 VHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ 219 (486)
Q Consensus 184 I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 219 (486)
|+|++|+||||+++.+.+..... -..++-|++.+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~--~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN--GRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc--cCCceEEEcch
Confidence 68999999999999999988654 23455565543
No 441
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.01 E-value=0.025 Score=47.89 Aligned_cols=47 Identities=26% Similarity=0.394 Sum_probs=32.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGME 237 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 237 (486)
.++++|+|.+|+||||+.+.+.... .. +..+ +.-++.-+++...+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~--~~iv---------NyG~~Mle~A~k~glv 50 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VK--HKIV---------NYGDLMLEIAKKKGLV 50 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hh--ceee---------eHhHHHHHHHHHhCCc
Confidence 5789999999999999999888776 21 2111 3345666666665543
No 442
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.01 E-value=0.02 Score=49.62 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~ 202 (486)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999866
No 443
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.01 E-value=0.055 Score=53.07 Aligned_cols=113 Identities=12% Similarity=0.092 Sum_probs=60.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKK 257 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (486)
....+.|.|+.|+||||+.+.+...... +....++. +.++.... .... ..+-...+...........+...|..
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~--~~~~~i~t-iEdp~E~~--~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINK--NAAGHIIT-IEDPIEYV--HRNK-RSLINQREVGLDTLSFANALRAALRE 194 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCc--CCCCEEEE-EcCChhhh--ccCc-cceEEccccCCCCcCHHHHHHHhhcc
Confidence 3478999999999999999998876532 23333333 22221110 0000 00000001111112344455666664
Q ss_pred CCcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeCchhhh
Q 042728 258 EKQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLL 308 (486)
Q Consensus 258 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 308 (486)
.+=.|++|.+.+.+.+...... ...|..|+.|.......
T Consensus 195 -~pd~i~vgEird~~~~~~~l~a-----------a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 195 -DPDVILIGEMRDLETVELALTA-----------AETGHLVFGTLHTNSAA 233 (343)
T ss_pred -CCCEEEEeCCCCHHHHHHHHHH-----------HHcCCcEEEEEcCCCHH
Confidence 6789999999877655432111 33455577777665543
No 444
>PRK13948 shikimate kinase; Provisional
Probab=95.00 E-value=0.026 Score=49.69 Aligned_cols=27 Identities=22% Similarity=0.462 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
....|.++|+.|+||||+++.+.+...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457799999999999999999998763
No 445
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=95.00 E-value=0.086 Score=53.34 Aligned_cols=92 Identities=20% Similarity=0.272 Sum_probs=58.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------------CCCCCH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGMEF-------------GLNENE 244 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------------~~~~~~ 244 (486)
-+.++|.|.+|+|||||+.++....... +-+.++++-+++.. .+.+++..+...-.... ....+.
T Consensus 161 GQR~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~ 239 (494)
T CHL00060 161 GGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 239 (494)
T ss_pred CCEEeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCH
Confidence 3568999999999999999988774332 12678888887665 55677776665211110 011121
Q ss_pred H------HHHHHHHHHHhc-C-CcEEEEEeCCCCc
Q 042728 245 F------QRAERLHERLKK-E-KQLLIILDNIWTK 271 (486)
Q Consensus 245 ~------~~~~~l~~~L~~-~-kr~LlVlDdv~~~ 271 (486)
. -....+-+++.. + +.+||++||+-..
T Consensus 240 ~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 240 GARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 1 223446677753 3 4899999999654
No 446
>PRK05636 replicative DNA helicase; Provisional
Probab=94.99 E-value=0.91 Score=46.87 Aligned_cols=53 Identities=19% Similarity=0.125 Sum_probs=37.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDL 234 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 234 (486)
-.++.|.|.+|+|||++|..++.....+... .++++ |-.-+..++...++...
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~~g~-~v~~f--SlEMs~~ql~~R~ls~~ 317 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIKHNK-ASVIF--SLEMSKSEIVMRLLSAE 317 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCC-eEEEE--EeeCCHHHHHHHHHHHh
Confidence 3578899999999999999998876554333 33333 45556667776666554
No 447
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=94.98 E-value=0.11 Score=48.97 Aligned_cols=88 Identities=19% Similarity=0.250 Sum_probs=53.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh-HccCC-------CeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCC-----------
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQVM-EENLF-------DKVVMAEVTQTP-DHHKIQNKLAFDLGMEFGLN----------- 241 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~~~-~~~~f-------~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~----------- 241 (486)
..|+|.||+|||||+...+=... .++.| ..+++|++.... ++-.=++.+..++++++..-
T Consensus 92 ~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~Ga 171 (402)
T COG3598 92 SILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVSGA 171 (402)
T ss_pred EEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheeccccccC
Confidence 45679999999999987764432 22233 368888876543 56666777888887654310
Q ss_pred CC-HH----HHHHHHHHHHhcCCcEEEEEeCCC
Q 042728 242 EN-EF----QRAERLHERLKKEKQLLIILDNIW 269 (486)
Q Consensus 242 ~~-~~----~~~~~l~~~L~~~kr~LlVlDdv~ 269 (486)
.. .+ .+..+....+.+.++-++|+|-.-
T Consensus 172 a~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v 204 (402)
T COG3598 172 ADESDVLSPKLYRRFEKILEQKRPDFVVIDPFV 204 (402)
T ss_pred CCccccccHHHHHHHHHHHHHhCCCeEEEcchh
Confidence 00 01 223333333444456789999864
No 448
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=94.95 E-value=0.31 Score=47.09 Aligned_cols=88 Identities=16% Similarity=0.118 Sum_probs=54.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHh----CCC---------CCCCCCH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDL----GME---------FGLNENE 244 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l----~~~---------~~~~~~~ 244 (486)
-..++|.|..|+|||+|++++.++. +-+.++++-+.+.. .+.+++.++-+.- +.. ...++..
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~ 232 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPV 232 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCCH
Confidence 3578999999999999999988763 34678888887654 4556666543211 110 0112221
Q ss_pred HHH------HHHHHHHHh-cCCcEEEEEeCCCC
Q 042728 245 FQR------AERLHERLK-KEKQLLIILDNIWT 270 (486)
Q Consensus 245 ~~~------~~~l~~~L~-~~kr~LlVlDdv~~ 270 (486)
... .-.+.+++. .++.+|+++|++-.
T Consensus 233 ~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~tR 265 (369)
T cd01134 233 AAREASIYTGITIAEYFRDMGYNVALMADSTSR 265 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcChhH
Confidence 111 233445553 36889999999843
No 449
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.046 Score=52.67 Aligned_cols=47 Identities=21% Similarity=0.130 Sum_probs=32.6
Q ss_pred ccccHHHHHHHHHHHhcc------------CCccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 159 AFDSRMKVFQDVMEALRD------------DKLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 159 ~~~gR~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
.+.|-++..+-|.+...- ..=+-|.++|++|.|||-||+.|+.....
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 345555555555554421 11245789999999999999999988763
No 450
>PRK00698 tmk thymidylate kinase; Validated
Probab=94.92 E-value=0.08 Score=47.64 Aligned_cols=27 Identities=22% Similarity=0.494 Sum_probs=24.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
.+|+|.|+.|+||||+++.+.+.....
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999887654
No 451
>PRK13768 GTPase; Provisional
Probab=94.91 E-value=0.049 Score=50.92 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEe
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEV 217 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v 217 (486)
.++.|.|++|+||||++..+.......+ ..++.++.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g--~~v~~i~~ 38 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQG--YDVAIVNL 38 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcC--CceEEEEC
Confidence 5789999999999999999988876542 34455544
No 452
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.90 E-value=0.042 Score=47.23 Aligned_cols=27 Identities=30% Similarity=0.594 Sum_probs=24.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
+++.|+|..|+|||||+..+.......
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999887654
No 453
>PLN02200 adenylate kinase family protein
Probab=94.90 E-value=0.026 Score=51.97 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.+.+|.|.|++|+||||+|+.+++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999998764
No 454
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.88 E-value=0.048 Score=48.53 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=31.1
Q ss_pred cccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 158 EAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
..++|.+..+..|.-.... .+-+.++|++|+|||++|+.+..-
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHh
Confidence 4678888777776555443 356899999999999999998754
No 455
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.87 E-value=0.035 Score=46.23 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=31.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEE
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAE 216 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 216 (486)
-.++.|.|++|+|||||..-+.-....+-.|.+.+|+.
T Consensus 28 GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~ 65 (213)
T COG4136 28 GEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLN 65 (213)
T ss_pred CcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEEC
Confidence 35799999999999999999988887774455778874
No 456
>PRK13946 shikimate kinase; Provisional
Probab=94.85 E-value=0.025 Score=50.10 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
+.|.++|++|+||||+++.+.+...
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5699999999999999999998873
No 457
>PRK15453 phosphoribulokinase; Provisional
Probab=94.85 E-value=0.033 Score=52.06 Aligned_cols=27 Identities=37% Similarity=0.491 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
...+|+|.|.+|+||||+++.+.+...
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999987664
No 458
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.84 E-value=0.16 Score=47.15 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
+|+|.|.+|+||||+++.+.+.....
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999887643
No 459
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.80 E-value=0.064 Score=50.69 Aligned_cols=42 Identities=26% Similarity=0.487 Sum_probs=31.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDH 223 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~ 223 (486)
++|+|.|-||+||||++..++.....++ ..++-|......+.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G--~kVlliD~Dpq~n~ 43 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMG--KKVMIVGCDPKADS 43 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCC--CeEEEEEcCCCCCc
Confidence 4688889999999999999998887542 25666766655443
No 460
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.80 E-value=0.028 Score=49.35 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.++.|+|++|+|||||++.++....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998754
No 461
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.79 E-value=0.024 Score=52.93 Aligned_cols=26 Identities=42% Similarity=0.698 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
.|.++|++|+||||+|+.+.......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999887543
No 462
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.77 E-value=0.036 Score=42.81 Aligned_cols=25 Identities=44% Similarity=0.702 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
++.+.|.+|+||||++..+......
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999998865
No 463
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.76 E-value=0.097 Score=49.16 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=27.0
Q ss_pred HHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 167 FQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 167 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+.+|...|..++ +-..++|.||+||+|+++.++.-.
T Consensus 20 i~ri~RvL~~~~-Gh~LLvG~~GsGr~sl~rLaa~i~ 55 (268)
T PF12780_consen 20 IARISRVLSQPR-GHALLVGVGGSGRQSLARLAAFIC 55 (268)
T ss_dssp HHHHHHHHCSTT-EEEEEECTTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCC-CCeEEecCCCccHHHHHHHHHHHh
Confidence 445566666555 455699999999999999887654
No 464
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.76 E-value=0.068 Score=51.36 Aligned_cols=30 Identities=20% Similarity=0.501 Sum_probs=26.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
+...+|+|+|++|+|||||+..+......+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 467899999999999999999999877654
No 465
>PRK04182 cytidylate kinase; Provisional
Probab=94.74 E-value=0.027 Score=49.54 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+|.|.|+.|+||||+++.+++..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998775
No 466
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.72 E-value=0.034 Score=52.35 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=29.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVT 218 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs 218 (486)
++|.|+|.+|+|||||+..+...+..++ .+..+...
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G---~V~~IKhd 37 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG---RVGTVKHM 37 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC---CEEEEEEc
Confidence 5799999999999999999999998764 36666543
No 467
>PRK05922 type III secretion system ATPase; Validated
Probab=94.72 E-value=0.19 Score=50.28 Aligned_cols=90 Identities=20% Similarity=0.232 Sum_probs=52.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCC------CCCCHH-----
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT-PDHHKIQNKLAFDLGMEFG------LNENEF----- 245 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~------~~~~~~----- 245 (486)
.-..++|.|..|+|||||.+.+..... .+...++.++.. ....+.+.+.......... ...+..
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 345689999999999999998886542 343444444433 2344555555443322111 111111
Q ss_pred -HHHHHHHHHHh-cCCcEEEEEeCCCCc
Q 042728 246 -QRAERLHERLK-KEKQLLIILDNIWTK 271 (486)
Q Consensus 246 -~~~~~l~~~L~-~~kr~LlVlDdv~~~ 271 (486)
...-.+.+++. .++++||++||+-..
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 12233555553 378999999999654
No 468
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=94.72 E-value=0.2 Score=50.77 Aligned_cols=93 Identities=17% Similarity=0.112 Sum_probs=58.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHcc--CCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC------CCCCCHH----
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEEN--LFDKVVMAEVTQTP-DHHKIQNKLAFDLGMEF------GLNENEF---- 245 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~---- 245 (486)
-+.++|.|..|+|||||+..+.++....+ .=-.++++.+++.. .+.++++.+...=.... ..+.+..
T Consensus 143 GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 222 (460)
T PRK04196 143 GQKLPIFSGSGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERIL 222 (460)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHH
Confidence 35689999999999999999988765321 01156777776655 56667776665422111 1112211
Q ss_pred --HHHHHHHHHHh--cCCcEEEEEeCCCCc
Q 042728 246 --QRAERLHERLK--KEKQLLIILDNIWTK 271 (486)
Q Consensus 246 --~~~~~l~~~L~--~~kr~LlVlDdv~~~ 271 (486)
-....+-+++. +++++||++||+-..
T Consensus 223 a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 252 (460)
T PRK04196 223 TPRMALTAAEYLAFEKGMHVLVILTDMTNY 252 (460)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcChHHH
Confidence 12344666766 478999999998643
No 469
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.72 E-value=0.037 Score=50.26 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
++|+|.|-||+||||++..++......
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~ 27 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEM 27 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHC
Confidence 468999999999999999999888764
No 470
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.71 E-value=0.12 Score=54.44 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=35.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHcc-CCCeEEEEEeCCCCCHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEEN-LFDKVVMAEVTQTPDHHKIQNKLAF 232 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (486)
.++..|.|.+|+||||++..+........ .-...+.+..........+.+.+..
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 36789999999999999999887764321 1124556655555555555555543
No 471
>PRK08760 replicative DNA helicase; Provisional
Probab=94.71 E-value=0.23 Score=50.85 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=36.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDL 234 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 234 (486)
-.++.|-|.+|+|||++|..++.....+... .++++ |-.-+..++...++...
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g~-~V~~f--SlEMs~~ql~~Rl~a~~ 281 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSKK-GVAVF--SMEMSASQLAMRLISSN 281 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcCC-ceEEE--eccCCHHHHHHHHHHhh
Confidence 3578999999999999999999877543223 34444 44445566666666543
No 472
>PRK14532 adenylate kinase; Provisional
Probab=94.71 E-value=0.025 Score=50.24 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~~ 203 (486)
|.|.|++|+||||+|+.+++..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998654
No 473
>PHA02774 E1; Provisional
Probab=94.71 E-value=0.073 Score=54.62 Aligned_cols=50 Identities=14% Similarity=0.152 Sum_probs=35.9
Q ss_pred HHHHHHHHHhccC-CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeC
Q 042728 165 KVFQDVMEALRDD-KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVT 218 (486)
Q Consensus 165 ~~~~~l~~~L~~~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs 218 (486)
.-+..|..++... ....+.|+|++|+|||.+|..+.+-.. ...+.|++..
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~~ 469 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNSK 469 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEECc
Confidence 3455666666442 345899999999999999999998863 3345677653
No 474
>PRK14531 adenylate kinase; Provisional
Probab=94.69 E-value=0.033 Score=49.32 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..|.|.|++|+||||+++.+....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998775
No 475
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.69 E-value=0.032 Score=48.67 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
..|.|+|++|+||||+++.+.+...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999998763
No 476
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.68 E-value=0.18 Score=48.71 Aligned_cols=90 Identities=21% Similarity=0.305 Sum_probs=52.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCC------CCCCCHHH----
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ-TPDHHKIQNKLAFDLGMEF------GLNENEFQ---- 246 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~------~~~~~~~~---- 246 (486)
.-..++|+|..|+|||||.+.+..... .+..+...+.. ..+..++.......-+... ....+...
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 346789999999999999998886542 33444444443 3355555555554432211 11222211
Q ss_pred --HHHHHHHHHh-cCCcEEEEEeCCCCc
Q 042728 247 --RAERLHERLK-KEKQLLIILDNIWTK 271 (486)
Q Consensus 247 --~~~~l~~~L~-~~kr~LlVlDdv~~~ 271 (486)
..-.+-+++. .++.+||++||+-..
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 1233344443 368899999998644
No 477
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.67 E-value=0.048 Score=47.42 Aligned_cols=43 Identities=12% Similarity=0.171 Sum_probs=29.3
Q ss_pred ccHHHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 161 DSRMKVFQDVMEALRD--DKLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 161 ~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+|....+.++.+.+.. ....-|.|+|..|+||+.+|+.+.+.-
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 5666666666665532 223457799999999999999998743
No 478
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.65 E-value=0.03 Score=51.34 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.|.|.|++|+||||+|+.+.+..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998775
No 479
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.65 E-value=0.03 Score=48.79 Aligned_cols=23 Identities=43% Similarity=0.667 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+|.|.|+.|+||||+|+.+.+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998764
No 480
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.60 E-value=0.056 Score=51.42 Aligned_cols=39 Identities=28% Similarity=0.437 Sum_probs=29.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT 220 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 220 (486)
++|+|+|-||+||||++..++......+ ..++-|.....
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G--~rVLliD~Dpq 40 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESG--KKVLVVGCDPK 40 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCC--CEEEEEeeCCc
Confidence 5788999999999999999998887542 23555554433
No 481
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.59 E-value=0.1 Score=52.34 Aligned_cols=90 Identities=16% Similarity=0.289 Sum_probs=52.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC------CCCCCHH-----
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGMEF------GLNENEF----- 245 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~----- 245 (486)
.-..++|+|..|+|||||++.+.... ..+.++...+.... ...++...+...-+... ....+..
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 34579999999999999998887542 23444444454433 45555555554432211 0111111
Q ss_pred -HHHHHHHHHHh-cCCcEEEEEeCCCCc
Q 042728 246 -QRAERLHERLK-KEKQLLIILDNIWTK 271 (486)
Q Consensus 246 -~~~~~l~~~L~-~~kr~LlVlDdv~~~ 271 (486)
.....+-+++. .++.+||++||+-..
T Consensus 243 ~~~a~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 243 AMYCTRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecchhHH
Confidence 11233445553 378999999998654
No 482
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.58 E-value=0.031 Score=49.90 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~~ 203 (486)
|.|.|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998764
No 483
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.58 E-value=0.028 Score=46.92 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
-.+++|+|..|+|||||.+.++...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 3579999999999999999987554
No 484
>PRK13236 nitrogenase reductase; Reviewed
Probab=94.56 E-value=0.066 Score=51.38 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=27.1
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 176 DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 176 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
+.+.+++++.|-||+||||++..++.-....
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~ 33 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAEM 33 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHHC
Confidence 4577999999999999999999998887664
No 485
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.54 E-value=0.063 Score=56.17 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=36.9
Q ss_pred ccccccHHHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 157 FEAFDSRMKVFQDVMEALRD--DKLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
++..+.|.+..+.|.+.... ....+|.|+|++|+||||+|+.++.....
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 34456677777766666532 24458999999999999999999988754
No 486
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.096 Score=49.06 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=35.1
Q ss_pred ccccccHHHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 157 FEAFDSRMKVFQDVMEALR----D---------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
.+++-|--....++.+.+. . ..+..+.|||++|.|||-+|+.|+......
T Consensus 131 ~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651|consen 131 FENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVN 193 (388)
T ss_pred HHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCc
Confidence 3344455555555555542 1 245679999999999999999999887654
No 487
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.53 E-value=0.031 Score=50.53 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAK 201 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~ 201 (486)
-..++|+|++|+|||||...+.-
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999998863
No 488
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.53 E-value=0.031 Score=47.53 Aligned_cols=25 Identities=36% Similarity=0.615 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
-.+.|.|++|+|||||.+.+++-..
T Consensus 30 e~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhccC
Confidence 4589999999999999999997654
No 489
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.53 E-value=0.12 Score=51.54 Aligned_cols=90 Identities=21% Similarity=0.316 Sum_probs=51.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCC------CCCCCHHH----
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ-TPDHHKIQNKLAFDLGMEF------GLNENEFQ---- 246 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~------~~~~~~~~---- 246 (486)
.-..++|.|..|+|||||++.+..... .+....+.+.. .....++.+..+..-+... ....+...
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~----~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD----ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 345799999999999999988876542 23333333333 3345555555444322211 11121111
Q ss_pred --HHHHHHHHHh-cCCcEEEEEeCCCCc
Q 042728 247 --RAERLHERLK-KEKQLLIILDNIWTK 271 (486)
Q Consensus 247 --~~~~l~~~L~-~~kr~LlVlDdv~~~ 271 (486)
....+.+++. .++.+||++||+-..
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 2233455553 368899999998654
No 490
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.49 E-value=0.033 Score=46.50 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+.|.++|..|+|||||++.+....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 457899999999999999997654
No 491
>PLN02348 phosphoribulokinase
Probab=94.45 E-value=0.043 Score=53.81 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=25.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
+.+-+|+|.|.+|+||||+|+.+.+....
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46679999999999999999999988753
No 492
>PRK06761 hypothetical protein; Provisional
Probab=94.44 E-value=0.034 Score=52.38 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
++|.|.|++|+||||+++.+++....
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 57999999999999999999988754
No 493
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=94.41 E-value=0.12 Score=51.84 Aligned_cols=90 Identities=17% Similarity=0.253 Sum_probs=48.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCC------CCCC------CH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ-TPDHHKIQNKLAFDLGMEF------GLNE------NE 244 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~------~~~~------~~ 244 (486)
.-..++|.|..|+|||||++.+..... .+..+...+.. .....++....+..-+... .... ..
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a 229 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKA 229 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcccC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHH
Confidence 446799999999999999998876442 23333333332 2233333333333322110 0011 11
Q ss_pred HHHHHHHHHHHh-cCCcEEEEEeCCCCc
Q 042728 245 FQRAERLHERLK-KEKQLLIILDNIWTK 271 (486)
Q Consensus 245 ~~~~~~l~~~L~-~~kr~LlVlDdv~~~ 271 (486)
......+.+++. .++.+||++||+-..
T Consensus 230 ~e~a~~iAEyfr~~g~~Vll~~Dsltr~ 257 (434)
T PRK07196 230 TELCHAIATYYRDKGHDVLLLVDSLTRY 257 (434)
T ss_pred HHHHHHHHHHhhhccCCEEEeecchhHH
Confidence 222333444433 268899999998654
No 494
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.40 E-value=0.67 Score=49.77 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.-..|+|+|.+|+|||||++.+..-
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4467999999999999999998643
No 495
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.40 E-value=0.2 Score=50.03 Aligned_cols=90 Identities=19% Similarity=0.310 Sum_probs=52.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC------CCCCCHHH----
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGMEF------GLNENEFQ---- 246 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~---- 246 (486)
.-..++|.|..|+|||||++.+..... .+..+...+.... ...++...+...=.... ....+...
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 345799999999999999988876432 3444455555543 44455554443311110 11122211
Q ss_pred --HHHHHHHHHh-cCCcEEEEEeCCCCc
Q 042728 247 --RAERLHERLK-KEKQLLIILDNIWTK 271 (486)
Q Consensus 247 --~~~~l~~~L~-~~kr~LlVlDdv~~~ 271 (486)
..-.+-+++. .++++||++||+-..
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsltr~ 239 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSLTRF 239 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeChHHH
Confidence 1233445553 368899999998643
No 496
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.39 E-value=0.062 Score=45.67 Aligned_cols=26 Identities=27% Similarity=0.657 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
++.+.|.+|+||||++..+.......
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~ 26 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRAR 26 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 37899999999999999999887554
No 497
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=0.36 Score=50.81 Aligned_cols=47 Identities=23% Similarity=0.237 Sum_probs=36.4
Q ss_pred ccccHHHHHHHHHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 159 AFDSRMKVFQDVMEALRDD---------KLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 159 ~~~gR~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
...+++..+..+.+.+..+ -..++.++|.+|+||||+++.++.....
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~ 457 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGL 457 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCC
Confidence 3456777777788887543 2357889999999999999999988743
No 498
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.35 E-value=0.037 Score=53.22 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.+|.+.|++|+||||+|+.+....
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999998764
No 499
>PRK14528 adenylate kinase; Provisional
Probab=94.35 E-value=0.043 Score=48.65 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+.|.|.|++|+||||+|+.+....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998665
No 500
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.35 E-value=0.15 Score=51.16 Aligned_cols=90 Identities=18% Similarity=0.273 Sum_probs=51.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeC-CCCCHHHHHHHHHHHhCCCC------CCCCCHHH----
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVT-QTPDHHKIQNKLAFDLGMEF------GLNENEFQ---- 246 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~------~~~~~~~~---- 246 (486)
.-..++|.|..|+|||||++.++.... .+....+-+. ....+.++.+.+...-+... ..+.+...
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~----~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQ----CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 446799999999999999998876542 2333333334 33355555555544322111 11111111
Q ss_pred --HHHHHHHHHh-cCCcEEEEEeCCCCc
Q 042728 247 --RAERLHERLK-KEKQLLIILDNIWTK 271 (486)
Q Consensus 247 --~~~~l~~~L~-~~kr~LlVlDdv~~~ 271 (486)
..-.+-+++. .++.+|+++||+-..
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 2233445553 368999999998654
Done!