Query 042728
Match_columns 486
No_of_seqs 356 out of 2646
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 15:25:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042728.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042728hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4.2E-48 1.4E-52 402.2 19.8 298 161-486 131-458 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.9E-41 6.4E-46 358.0 18.4 277 160-486 130-430 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 3.5E-40 1.2E-44 375.8 24.6 302 154-486 120-439 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.1E-36 3.7E-41 320.6 25.8 297 156-486 122-439 (591)
5 2qen_A Walker-type ATPase; unk 99.8 5.8E-17 2E-21 158.6 22.5 289 155-486 9-341 (350)
6 1w5s_A Origin recognition comp 99.7 1.3E-16 4.5E-21 159.8 22.6 296 157-475 21-370 (412)
7 2fna_A Conserved hypothetical 99.7 3E-16 1E-20 153.8 23.5 283 156-486 11-349 (357)
8 2qby_B CDC6 homolog 3, cell di 99.6 2E-13 7E-18 135.1 24.2 287 157-475 19-338 (384)
9 2qby_A CDC6 homolog 1, cell di 99.6 2.7E-13 9.2E-18 134.2 23.4 291 157-475 19-347 (386)
10 3qfl_A MLA10; coiled-coil, (CC 99.6 1.4E-14 4.9E-19 116.1 9.7 80 14-100 3-83 (115)
11 2v1u_A Cell division control p 99.5 3.5E-13 1.2E-17 133.5 21.4 296 157-475 18-350 (387)
12 1fnn_A CDC6P, cell division co 99.5 4.9E-12 1.7E-16 125.3 25.4 293 157-475 16-350 (389)
13 1njg_A DNA polymerase III subu 99.5 1.2E-12 4.1E-17 120.6 15.7 200 154-370 19-231 (250)
14 2chg_A Replication factor C sm 99.4 3.7E-12 1.3E-16 115.6 16.8 191 154-369 13-206 (226)
15 1sxj_B Activator 1 37 kDa subu 99.3 3.5E-11 1.2E-15 116.0 13.9 193 153-369 16-212 (323)
16 1hqc_A RUVB; extended AAA-ATPa 99.1 2.6E-09 8.8E-14 102.9 18.7 186 155-371 9-215 (324)
17 1iqp_A RFCS; clamp loader, ext 99.1 2.4E-10 8.1E-15 110.3 11.0 192 153-371 20-216 (327)
18 2chq_A Replication factor C sm 99.1 1.8E-09 6.1E-14 103.7 15.4 190 154-370 13-207 (319)
19 3te6_A Regulatory protein SIR3 99.0 9.1E-09 3.1E-13 97.6 17.2 174 159-337 21-212 (318)
20 1jr3_A DNA polymerase III subu 99.0 3.5E-09 1.2E-13 104.0 14.3 198 154-368 12-222 (373)
21 1jbk_A CLPB protein; beta barr 98.9 3.5E-09 1.2E-13 93.3 9.1 162 155-332 19-194 (195)
22 3pvs_A Replication-associated 98.8 1E-07 3.6E-12 95.3 15.9 185 150-369 18-217 (447)
23 1sxj_D Activator 1 41 kDa subu 98.8 3.6E-08 1.2E-12 96.0 12.1 199 153-367 32-235 (353)
24 2qz4_A Paraplegin; AAA+, SPG7, 98.8 4.7E-07 1.6E-11 84.0 19.0 185 156-367 4-222 (262)
25 3h4m_A Proteasome-activating n 98.8 5.5E-08 1.9E-12 91.7 12.7 184 154-366 13-230 (285)
26 3bos_A Putative DNA replicatio 98.7 2.6E-08 8.8E-13 91.3 8.5 178 156-368 26-218 (242)
27 1d2n_A N-ethylmaleimide-sensit 98.7 3.3E-07 1.1E-11 85.8 15.6 196 159-388 34-264 (272)
28 1sxj_E Activator 1 40 kDa subu 98.7 7.3E-08 2.5E-12 93.9 11.5 201 153-369 9-239 (354)
29 3uk6_A RUVB-like 2; hexameric 98.6 6.3E-07 2.2E-11 87.7 15.9 198 157-367 43-303 (368)
30 1sxj_C Activator 1 40 kDa subu 98.6 4.6E-07 1.6E-11 87.7 14.5 182 153-364 20-209 (340)
31 3u61_B DNA polymerase accessor 98.6 2.7E-07 9.3E-12 88.7 12.8 180 152-366 20-215 (324)
32 1xwi_A SKD1 protein; VPS4B, AA 98.6 2.8E-06 9.5E-11 81.4 19.4 189 154-368 8-224 (322)
33 3d8b_A Fidgetin-like protein 1 98.6 1E-06 3.4E-11 85.9 16.4 188 155-368 81-296 (357)
34 1sxj_A Activator 1 95 kDa subu 98.6 1.1E-07 3.6E-12 97.5 9.8 193 153-368 34-254 (516)
35 3eie_A Vacuolar protein sortin 98.6 1.1E-06 3.7E-11 84.4 15.6 189 153-368 13-229 (322)
36 3pfi_A Holliday junction ATP-d 98.6 5.3E-07 1.8E-11 87.1 13.6 184 154-368 25-228 (338)
37 3b9p_A CG5977-PA, isoform A; A 98.6 3.4E-06 1.2E-10 79.8 19.0 186 154-367 17-233 (297)
38 1a5t_A Delta prime, HOLB; zinc 98.5 1.4E-06 4.9E-11 83.9 15.8 170 164-366 8-204 (334)
39 2z4s_A Chromosomal replication 98.5 9.1E-07 3.1E-11 88.5 14.8 202 157-384 104-331 (440)
40 3vfd_A Spastin; ATPase, microt 98.5 3.4E-06 1.2E-10 83.1 18.3 188 154-367 111-326 (389)
41 3syl_A Protein CBBX; photosynt 98.5 1.7E-07 5.7E-12 89.5 8.5 152 159-337 32-218 (309)
42 3pxg_A Negative regulator of g 98.5 1.2E-06 4E-11 88.5 13.8 150 157-337 179-339 (468)
43 2zan_A Vacuolar protein sortin 98.4 7.1E-06 2.4E-10 82.2 18.0 189 154-368 130-346 (444)
44 2qp9_X Vacuolar protein sortin 98.4 3.7E-06 1.3E-10 81.7 15.0 187 155-368 48-262 (355)
45 4b4t_J 26S protease regulatory 98.4 6.3E-06 2.1E-10 80.1 16.2 185 153-360 143-354 (405)
46 2p65_A Hypothetical protein PF 98.4 4.3E-07 1.5E-11 79.3 7.3 51 155-205 19-69 (187)
47 1l8q_A Chromosomal replication 98.4 2.9E-06 1E-10 81.4 13.7 178 157-363 10-204 (324)
48 1qvr_A CLPB protein; coiled co 98.4 2.9E-06 9.9E-11 92.3 14.6 166 155-336 167-345 (854)
49 3cf0_A Transitional endoplasmi 98.3 1.4E-05 4.9E-10 75.7 16.9 181 153-362 10-223 (301)
50 4b4t_L 26S protease subunit RP 98.3 1E-05 3.6E-10 79.8 15.9 183 155-360 178-387 (437)
51 4b4t_H 26S protease regulatory 98.3 1.2E-05 4.2E-10 79.2 15.8 181 156-359 207-414 (467)
52 4b4t_M 26S protease regulatory 98.3 5.1E-06 1.7E-10 82.0 12.3 178 153-359 176-386 (434)
53 4b4t_I 26S protease regulatory 98.2 2.1E-05 7.2E-10 76.7 15.3 184 153-359 177-387 (437)
54 1r6b_X CLPA protein; AAA+, N-t 98.2 2.2E-05 7.6E-10 84.3 16.8 157 156-336 184-362 (758)
55 1lv7_A FTSH; alpha/beta domain 98.2 2.9E-05 1E-09 71.6 15.5 190 154-366 8-224 (257)
56 3ec2_A DNA replication protein 98.2 3.7E-06 1.3E-10 73.2 8.2 118 163-305 19-143 (180)
57 3pxi_A Negative regulator of g 98.2 7.9E-06 2.7E-10 87.7 12.3 153 156-337 178-339 (758)
58 2gno_A DNA polymerase III, gam 98.2 7.5E-06 2.6E-10 77.5 10.7 146 162-336 1-152 (305)
59 4b4t_K 26S protease regulatory 98.2 2.4E-05 8.2E-10 77.1 14.1 177 154-359 168-378 (428)
60 3hu3_A Transitional endoplasmi 98.0 4E-05 1.4E-09 77.4 13.1 182 156-366 202-414 (489)
61 2ce7_A Cell division protein F 98.0 6.7E-05 2.3E-09 75.2 14.0 176 156-360 14-221 (476)
62 3n70_A Transport activator; si 98.0 1.8E-06 6.1E-11 72.4 2.0 45 159-203 2-48 (145)
63 4fcw_A Chaperone protein CLPB; 98.0 1.7E-05 5.7E-10 75.5 8.3 106 158-271 17-131 (311)
64 2w58_A DNAI, primosome compone 97.9 6.5E-05 2.2E-09 66.5 11.0 95 157-270 24-126 (202)
65 1ofh_A ATP-dependent HSL prote 97.9 4.9E-05 1.7E-09 72.1 10.8 46 158-203 15-74 (310)
66 2r62_A Cell division protease 97.9 5E-06 1.7E-10 77.4 3.3 50 155-204 8-69 (268)
67 1in4_A RUVB, holliday junction 97.9 0.00019 6.4E-09 69.0 14.5 184 154-367 21-223 (334)
68 2c9o_A RUVB-like 1; hexameric 97.8 0.00014 4.9E-09 73.0 13.0 48 157-204 36-88 (456)
69 3cf2_A TER ATPase, transitiona 97.7 8E-05 2.7E-09 79.0 9.1 176 157-361 203-408 (806)
70 3pxi_A Negative regulator of g 97.6 3.3E-05 1.1E-09 82.9 4.2 155 158-336 491-675 (758)
71 1ixz_A ATP-dependent metallopr 97.5 0.0006 2.1E-08 62.6 11.8 177 154-359 12-220 (254)
72 1ojl_A Transcriptional regulat 97.5 0.00026 8.8E-09 67.0 9.1 45 159-203 3-49 (304)
73 3m6a_A ATP-dependent protease 97.5 0.00072 2.5E-08 69.3 13.1 166 158-336 81-266 (543)
74 3io5_A Recombination and repai 97.5 0.00059 2E-08 63.8 11.2 87 180-271 29-123 (333)
75 3hr8_A Protein RECA; alpha and 97.5 0.0006 2E-08 65.5 11.2 86 179-271 61-151 (356)
76 2x8a_A Nuclear valosin-contain 97.5 0.002 6.9E-08 59.8 14.4 162 155-337 7-192 (274)
77 2kjq_A DNAA-related protein; s 97.4 3.7E-05 1.3E-09 64.5 1.9 40 178-219 35-74 (149)
78 1iy2_A ATP-dependent metallopr 97.4 0.0022 7.4E-08 59.7 13.4 178 154-360 36-245 (278)
79 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0004 1.4E-08 74.6 8.8 103 158-271 458-569 (758)
80 2zr9_A Protein RECA, recombina 97.3 0.0012 4E-08 63.6 11.0 87 178-271 60-151 (349)
81 2dhr_A FTSH; AAA+ protein, hex 97.3 0.0024 8.4E-08 64.2 13.5 175 154-360 27-236 (499)
82 2cvh_A DNA repair and recombin 97.3 0.0015 5.1E-08 58.2 10.7 86 179-271 20-117 (220)
83 1xp8_A RECA protein, recombina 97.3 0.0017 5.7E-08 62.8 11.3 86 179-271 74-164 (366)
84 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.00025 8.5E-09 66.6 5.3 69 180-271 124-194 (331)
85 1n0w_A DNA repair protein RAD5 97.2 0.0015 5.3E-08 59.2 10.5 92 179-271 24-131 (243)
86 1u94_A RECA protein, recombina 97.2 0.0019 6.7E-08 62.1 10.7 86 178-270 62-152 (356)
87 3t15_A Ribulose bisphosphate c 97.2 0.00031 1E-08 66.1 4.8 27 178-204 35-61 (293)
88 1ypw_A Transitional endoplasmi 97.1 0.00082 2.8E-08 72.2 8.6 156 156-338 202-387 (806)
89 1v5w_A DMC1, meiotic recombina 97.1 0.0025 8.4E-08 61.3 10.7 92 178-270 121-230 (343)
90 2z43_A DNA repair and recombin 97.1 0.0021 7.2E-08 61.3 9.9 91 179-270 107-214 (324)
91 2i1q_A DNA repair and recombin 97.0 0.0022 7.7E-08 61.0 9.6 91 179-270 98-215 (322)
92 1qvr_A CLPB protein; coiled co 97.0 0.0007 2.4E-08 73.5 6.6 61 158-220 558-627 (854)
93 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.0037 1.3E-07 56.1 10.3 87 179-270 23-134 (235)
94 1jr3_D DNA polymerase III, del 96.9 0.012 4.3E-07 56.3 14.0 165 171-366 10-184 (343)
95 3bh0_A DNAB-like replicative h 96.8 0.0053 1.8E-07 58.2 10.4 51 179-233 68-118 (315)
96 3lda_A DNA repair protein RAD5 96.7 0.004 1.4E-07 60.9 8.5 91 179-270 178-284 (400)
97 2px0_A Flagellar biosynthesis 96.7 0.0076 2.6E-07 56.5 10.0 87 178-268 104-191 (296)
98 1rz3_A Hypothetical protein rb 96.7 0.0023 7.9E-08 56.3 6.1 44 162-205 2-48 (201)
99 2dr3_A UPF0273 protein PH0284; 96.7 0.011 3.7E-07 53.5 10.7 39 179-219 23-61 (247)
100 3dm5_A SRP54, signal recogniti 96.6 0.012 4.2E-07 57.9 11.3 29 178-206 99-127 (443)
101 4a74_A DNA repair and recombin 96.6 0.007 2.4E-07 54.2 8.8 91 179-270 25-136 (231)
102 3co5_A Putative two-component 96.6 0.00073 2.5E-08 56.0 2.0 44 159-202 5-50 (143)
103 4a1f_A DNAB helicase, replicat 96.6 0.015 5.1E-07 55.3 11.1 50 179-232 46-95 (338)
104 3c8u_A Fructokinase; YP_612366 96.6 0.0028 9.5E-08 56.1 5.8 41 165-205 6-48 (208)
105 2xxa_A Signal recognition part 96.5 0.03 1E-06 55.3 13.7 90 178-268 99-192 (433)
106 3ice_A Transcription terminati 96.5 0.0039 1.3E-07 59.8 6.7 100 170-271 164-273 (422)
107 2r44_A Uncharacterized protein 96.5 0.0039 1.3E-07 59.6 6.6 161 157-338 26-200 (331)
108 3cf2_A TER ATPase, transitiona 96.5 0.0018 6.2E-08 68.7 4.6 183 154-359 473-682 (806)
109 3kl4_A SRP54, signal recogniti 96.4 0.019 6.7E-07 56.5 11.5 38 178-217 96-133 (433)
110 2ehv_A Hypothetical protein PH 96.4 0.014 4.9E-07 52.8 9.8 38 179-218 30-68 (251)
111 1g8p_A Magnesium-chelatase 38 96.4 0.0017 5.8E-08 62.5 3.6 50 155-204 21-70 (350)
112 3cmu_A Protein RECA, recombina 96.3 0.011 3.9E-07 68.3 10.2 85 178-269 1426-1515(2050)
113 2bjv_A PSP operon transcriptio 96.3 0.0024 8.3E-08 58.9 3.9 62 157-220 5-68 (265)
114 1sky_E F1-ATPase, F1-ATP synth 96.3 0.0057 1.9E-07 60.6 6.6 91 180-271 152-257 (473)
115 1qhx_A CPT, protein (chloramph 96.2 0.0028 9.6E-08 54.4 3.7 24 180-203 4-27 (178)
116 3kb2_A SPBC2 prophage-derived 96.2 0.003 1E-07 53.7 3.9 25 180-204 2-26 (173)
117 4akg_A Glutathione S-transfera 96.2 0.074 2.5E-06 63.8 16.6 147 180-337 1268-1432(2695)
118 1vma_A Cell division protein F 96.2 0.026 9E-07 53.0 10.5 89 178-269 103-196 (306)
119 1j8m_F SRP54, signal recogniti 96.2 0.044 1.5E-06 51.3 12.0 89 179-269 98-190 (297)
120 2ck3_D ATP synthase subunit be 96.2 0.028 9.7E-07 55.5 10.9 91 179-270 153-264 (482)
121 1pzn_A RAD51, DNA repair and r 96.2 0.013 4.6E-07 56.2 8.5 93 178-271 130-243 (349)
122 2hf9_A Probable hydrogenase ni 96.1 0.0064 2.2E-07 54.3 5.7 41 164-204 23-63 (226)
123 2qgz_A Helicase loader, putati 96.1 0.012 4.2E-07 55.4 7.8 54 162-217 132-189 (308)
124 3vaa_A Shikimate kinase, SK; s 96.1 0.0039 1.3E-07 54.7 3.9 26 178-203 24-49 (199)
125 2b8t_A Thymidine kinase; deoxy 96.1 0.0023 8E-08 57.1 2.4 112 179-306 12-127 (223)
126 3uie_A Adenylyl-sulfate kinase 96.1 0.0045 1.5E-07 54.4 4.3 29 176-204 22-50 (200)
127 1cr0_A DNA primase/helicase; R 96.1 0.05 1.7E-06 50.8 11.8 40 178-218 34-73 (296)
128 3e70_C DPA, signal recognition 96.0 0.078 2.7E-06 50.3 13.0 58 177-236 127-185 (328)
129 3trf_A Shikimate kinase, SK; a 96.0 0.0042 1.5E-07 53.6 3.9 25 179-203 5-29 (185)
130 4eun_A Thermoresistant glucoki 96.0 0.0046 1.6E-07 54.3 4.2 27 177-203 27-53 (200)
131 1kgd_A CASK, peripheral plasma 96.0 0.0041 1.4E-07 53.6 3.7 24 180-203 6-29 (180)
132 1ls1_A Signal recognition part 96.0 0.031 1.1E-06 52.2 10.1 88 179-268 98-189 (295)
133 2q6t_A DNAB replication FORK h 96.0 0.028 9.4E-07 56.0 10.3 52 179-233 200-251 (444)
134 3lw7_A Adenylate kinase relate 96.0 0.0035 1.2E-07 53.4 3.2 20 180-199 2-21 (179)
135 2j37_W Signal recognition part 96.0 0.089 3E-06 52.9 13.6 29 178-206 100-128 (504)
136 2r6a_A DNAB helicase, replicat 96.0 0.028 9.7E-07 56.1 10.0 50 179-231 203-252 (454)
137 1ly1_A Polynucleotide kinase; 95.9 0.0043 1.5E-07 53.2 3.5 22 180-201 3-24 (181)
138 1kag_A SKI, shikimate kinase I 95.9 0.0041 1.4E-07 53.1 3.3 24 180-203 5-28 (173)
139 1odf_A YGR205W, hypothetical 3 95.9 0.0088 3E-07 55.8 5.7 55 177-231 29-84 (290)
140 3t61_A Gluconokinase; PSI-biol 95.9 0.0048 1.6E-07 54.2 3.6 25 179-203 18-42 (202)
141 3nbx_X ATPase RAVA; AAA+ ATPas 95.9 0.0043 1.5E-07 62.5 3.6 44 158-203 22-65 (500)
142 1nks_A Adenylate kinase; therm 95.9 0.0054 1.8E-07 53.2 3.9 26 180-205 2-27 (194)
143 1zp6_A Hypothetical protein AT 95.9 0.0049 1.7E-07 53.5 3.6 24 179-202 9-32 (191)
144 2rhm_A Putative kinase; P-loop 95.9 0.006 2.1E-07 53.0 4.1 25 179-203 5-29 (193)
145 3cmw_A Protein RECA, recombina 95.9 0.026 8.8E-07 64.6 10.1 87 178-271 382-473 (1706)
146 2wsm_A Hydrogenase expression/ 95.9 0.0072 2.5E-07 53.8 4.7 42 163-204 14-55 (221)
147 3hws_A ATP-dependent CLP prote 95.9 0.0087 3E-07 57.9 5.6 45 159-203 16-75 (363)
148 1kht_A Adenylate kinase; phosp 95.8 0.0062 2.1E-07 52.8 4.0 26 180-205 4-29 (192)
149 3iij_A Coilin-interacting nucl 95.8 0.0059 2E-07 52.5 3.8 25 179-203 11-35 (180)
150 2ga8_A Hypothetical 39.9 kDa p 95.8 0.013 4.4E-07 55.8 6.3 45 161-205 2-50 (359)
151 1xjc_A MOBB protein homolog; s 95.8 0.0086 2.9E-07 50.8 4.5 29 178-206 3-31 (169)
152 2yvu_A Probable adenylyl-sulfa 95.8 0.0072 2.5E-07 52.3 4.2 29 178-206 12-40 (186)
153 1via_A Shikimate kinase; struc 95.7 0.0059 2E-07 52.2 3.5 25 180-204 5-29 (175)
154 3bgw_A DNAB-like replicative h 95.7 0.046 1.6E-06 54.2 10.4 39 179-219 197-235 (444)
155 1um8_A ATP-dependent CLP prote 95.7 0.011 3.8E-07 57.4 5.8 46 158-203 21-96 (376)
156 2qor_A Guanylate kinase; phosp 95.7 0.0062 2.1E-07 53.6 3.6 26 178-203 11-36 (204)
157 3tau_A Guanylate kinase, GMP k 95.7 0.0073 2.5E-07 53.4 4.0 26 178-203 7-32 (208)
158 1ex7_A Guanylate kinase; subst 95.7 0.006 2.1E-07 52.8 3.3 24 180-203 2-25 (186)
159 3cmu_A Protein RECA, recombina 95.7 0.032 1.1E-06 64.7 10.0 87 178-271 382-473 (2050)
160 1zuh_A Shikimate kinase; alpha 95.7 0.0077 2.6E-07 51.1 3.9 27 178-204 6-32 (168)
161 2ffh_A Protein (FFH); SRP54, s 95.7 0.13 4.6E-06 50.4 13.2 88 178-268 97-189 (425)
162 1y63_A LMAJ004144AAA protein; 95.6 0.0088 3E-07 51.7 4.3 25 178-202 9-33 (184)
163 2ze6_A Isopentenyl transferase 95.6 0.007 2.4E-07 55.4 3.8 24 180-203 2-25 (253)
164 1knq_A Gluconate kinase; ALFA/ 95.6 0.0076 2.6E-07 51.5 3.8 25 179-203 8-32 (175)
165 2jaq_A Deoxyguanosine kinase; 95.6 0.0076 2.6E-07 52.8 3.9 24 181-204 2-25 (205)
166 3tr0_A Guanylate kinase, GMP k 95.6 0.0067 2.3E-07 53.3 3.6 25 179-203 7-31 (205)
167 2c95_A Adenylate kinase 1; tra 95.6 0.0083 2.9E-07 52.2 4.1 26 178-203 8-33 (196)
168 2zts_A Putative uncharacterize 95.6 0.041 1.4E-06 49.7 9.0 49 179-230 30-78 (251)
169 2iyv_A Shikimate kinase, SK; t 95.6 0.0067 2.3E-07 52.3 3.4 25 180-204 3-27 (184)
170 3a00_A Guanylate kinase, GMP k 95.6 0.0065 2.2E-07 52.7 3.2 25 180-204 2-26 (186)
171 1ye8_A Protein THEP1, hypothet 95.6 0.0085 2.9E-07 51.5 3.9 25 181-205 2-26 (178)
172 1tev_A UMP-CMP kinase; ploop, 95.6 0.0085 2.9E-07 52.0 3.9 25 179-203 3-27 (196)
173 1gvn_B Zeta; postsegregational 95.6 0.013 4.6E-07 54.6 5.4 26 178-203 32-57 (287)
174 1q57_A DNA primase/helicase; d 95.5 0.074 2.5E-06 53.8 11.3 50 179-231 242-291 (503)
175 1cke_A CK, MSSA, protein (cyti 95.5 0.0086 2.9E-07 53.5 3.9 24 180-203 6-29 (227)
176 3tlx_A Adenylate kinase 2; str 95.5 0.017 5.8E-07 52.4 5.9 27 177-203 27-53 (243)
177 1fx0_B ATP synthase beta chain 95.5 0.043 1.5E-06 54.4 9.0 91 179-270 165-277 (498)
178 3ney_A 55 kDa erythrocyte memb 95.5 0.01 3.6E-07 51.7 4.2 26 178-203 18-43 (197)
179 1e6c_A Shikimate kinase; phosp 95.5 0.0082 2.8E-07 51.1 3.5 25 180-204 3-27 (173)
180 2j41_A Guanylate kinase; GMP, 95.5 0.0095 3.2E-07 52.3 4.0 25 179-203 6-30 (207)
181 2bwj_A Adenylate kinase 5; pho 95.5 0.0096 3.3E-07 51.9 4.0 26 179-204 12-37 (199)
182 1lvg_A Guanylate kinase, GMP k 95.5 0.0082 2.8E-07 52.6 3.5 25 180-204 5-29 (198)
183 3jvv_A Twitching mobility prot 95.5 0.0042 1.4E-07 59.8 1.7 113 178-308 122-234 (356)
184 1g5t_A COB(I)alamin adenosyltr 95.5 0.034 1.2E-06 48.2 7.3 124 179-307 28-165 (196)
185 2bdt_A BH3686; alpha-beta prot 95.5 0.0083 2.8E-07 52.0 3.5 22 180-201 3-24 (189)
186 3asz_A Uridine kinase; cytidin 95.4 0.011 3.7E-07 52.3 4.1 27 178-204 5-31 (211)
187 1ukz_A Uridylate kinase; trans 95.4 0.011 3.6E-07 51.9 4.1 26 178-203 14-39 (203)
188 1uf9_A TT1252 protein; P-loop, 95.4 0.0099 3.4E-07 52.0 3.8 26 177-202 6-31 (203)
189 3cm0_A Adenylate kinase; ATP-b 95.4 0.01 3.5E-07 51.2 3.8 24 180-203 5-28 (186)
190 3umf_A Adenylate kinase; rossm 95.4 0.011 3.8E-07 52.5 4.1 26 178-203 28-53 (217)
191 2cdn_A Adenylate kinase; phosp 95.4 0.012 4.1E-07 51.5 4.4 26 178-203 19-44 (201)
192 2plr_A DTMP kinase, probable t 95.4 0.011 3.6E-07 52.2 4.0 26 180-205 5-30 (213)
193 2bbw_A Adenylate kinase 4, AK4 95.4 0.011 3.8E-07 53.7 4.2 26 178-203 26-51 (246)
194 3vkg_A Dynein heavy chain, cyt 95.4 0.21 7.2E-06 60.6 15.8 79 182-270 1307-1385(3245)
195 3cmw_A Protein RECA, recombina 95.3 0.051 1.8E-06 62.2 10.1 86 179-271 1431-1521(1706)
196 1aky_A Adenylate kinase; ATP:A 95.3 0.012 4.1E-07 52.4 4.2 25 179-203 4-28 (220)
197 2z0h_A DTMP kinase, thymidylat 95.3 0.035 1.2E-06 48.2 7.1 25 181-205 2-26 (197)
198 2if2_A Dephospho-COA kinase; a 95.3 0.01 3.4E-07 52.2 3.5 22 180-201 2-23 (204)
199 1qf9_A UMP/CMP kinase, protein 95.3 0.011 3.9E-07 51.1 3.9 25 179-203 6-30 (194)
200 2wwf_A Thymidilate kinase, put 95.3 0.013 4.4E-07 51.7 4.3 32 179-211 10-41 (212)
201 3upu_A ATP-dependent DNA helic 95.3 0.043 1.5E-06 54.8 8.6 44 162-206 29-72 (459)
202 4gp7_A Metallophosphoesterase; 95.3 0.0082 2.8E-07 51.2 2.8 21 179-199 9-29 (171)
203 1nn5_A Similar to deoxythymidy 95.3 0.014 4.8E-07 51.6 4.4 33 178-211 8-40 (215)
204 3fwy_A Light-independent proto 95.3 0.028 9.5E-07 53.1 6.6 41 177-219 46-86 (314)
205 2vli_A Antibiotic resistance p 95.3 0.0079 2.7E-07 51.7 2.6 25 179-203 5-29 (183)
206 3k1j_A LON protease, ATP-depen 95.3 0.013 4.3E-07 61.0 4.6 49 154-204 37-85 (604)
207 3tqc_A Pantothenate kinase; bi 95.3 0.082 2.8E-06 49.9 9.8 27 178-204 91-117 (321)
208 2pt5_A Shikimate kinase, SK; a 95.2 0.013 4.3E-07 49.6 3.8 24 181-204 2-25 (168)
209 2pbr_A DTMP kinase, thymidylat 95.2 0.013 4.3E-07 50.9 3.9 25 181-205 2-26 (195)
210 3a4m_A L-seryl-tRNA(SEC) kinas 95.2 0.012 4E-07 54.1 3.9 27 179-205 4-30 (260)
211 1znw_A Guanylate kinase, GMP k 95.2 0.011 3.7E-07 52.2 3.4 25 179-203 20-44 (207)
212 1zak_A Adenylate kinase; ATP:A 95.2 0.013 4.5E-07 52.2 3.9 26 179-204 5-30 (222)
213 2p5t_B PEZT; postsegregational 95.2 0.016 5.6E-07 52.8 4.6 26 178-203 31-56 (253)
214 2qt1_A Nicotinamide riboside k 95.1 0.013 4.4E-07 51.6 3.7 24 179-202 21-44 (207)
215 1rj9_A FTSY, signal recognitio 95.1 0.024 8.4E-07 53.2 5.7 28 178-205 101-128 (304)
216 1z6g_A Guanylate kinase; struc 95.1 0.011 3.8E-07 52.6 3.2 25 179-203 23-47 (218)
217 1tue_A Replication protein E1; 95.1 0.021 7.1E-07 49.9 4.7 39 166-204 44-83 (212)
218 3fb4_A Adenylate kinase; psych 95.1 0.014 4.9E-07 51.7 3.9 23 181-203 2-24 (216)
219 1g41_A Heat shock protein HSLU 95.1 0.016 5.5E-07 57.1 4.5 48 157-204 14-75 (444)
220 2f1r_A Molybdopterin-guanine d 95.1 0.013 4.6E-07 49.9 3.4 27 180-206 3-29 (171)
221 1jjv_A Dephospho-COA kinase; P 95.1 0.012 4.3E-07 51.7 3.3 22 180-201 3-24 (206)
222 1zd8_A GTP:AMP phosphotransfer 95.1 0.014 5E-07 52.2 3.8 25 179-203 7-31 (227)
223 1gtv_A TMK, thymidylate kinase 95.0 0.0084 2.9E-07 53.0 2.2 25 181-205 2-26 (214)
224 3end_A Light-independent proto 95.0 0.037 1.3E-06 52.0 6.8 44 176-221 38-81 (307)
225 1uj2_A Uridine-cytidine kinase 95.0 0.015 5E-07 53.1 3.9 28 177-204 20-47 (252)
226 4e22_A Cytidylate kinase; P-lo 95.0 0.015 5.1E-07 53.1 3.7 26 178-203 26-51 (252)
227 1s96_A Guanylate kinase, GMP k 95.0 0.015 5.2E-07 51.8 3.6 27 178-204 15-41 (219)
228 3aez_A Pantothenate kinase; tr 94.9 0.018 6.3E-07 54.3 4.3 42 177-218 88-129 (312)
229 2grj_A Dephospho-COA kinase; T 94.9 0.016 5.6E-07 50.4 3.7 26 178-203 11-36 (192)
230 1m7g_A Adenylylsulfate kinase; 94.9 0.023 7.8E-07 50.2 4.7 28 177-204 23-50 (211)
231 1np6_A Molybdopterin-guanine d 94.9 0.035 1.2E-06 47.4 5.6 27 179-205 6-32 (174)
232 2jeo_A Uridine-cytidine kinase 94.9 0.019 6.6E-07 52.1 4.2 26 178-203 24-49 (245)
233 3dl0_A Adenylate kinase; phosp 94.8 0.017 6E-07 51.1 3.7 23 181-203 2-24 (216)
234 1htw_A HI0065; nucleotide-bind 94.8 0.018 6.1E-07 48.4 3.5 26 178-203 32-57 (158)
235 2v54_A DTMP kinase, thymidylat 94.8 0.019 6.4E-07 50.3 3.8 25 179-203 4-28 (204)
236 3p32_A Probable GTPase RV1496/ 94.8 0.041 1.4E-06 52.9 6.5 40 167-206 65-106 (355)
237 2i3b_A HCR-ntpase, human cance 94.8 0.018 6.2E-07 50.0 3.6 24 181-204 3-26 (189)
238 3r20_A Cytidylate kinase; stru 94.8 0.021 7.2E-07 51.2 4.0 25 179-203 9-33 (233)
239 3nwj_A ATSK2; P loop, shikimat 94.7 0.018 6.1E-07 52.4 3.5 25 180-204 49-73 (250)
240 3ake_A Cytidylate kinase; CMP 94.7 0.021 7.3E-07 50.0 3.9 25 180-204 3-27 (208)
241 2pez_A Bifunctional 3'-phospho 94.7 0.023 7.9E-07 48.6 4.0 27 179-205 5-31 (179)
242 3sr0_A Adenylate kinase; phosp 94.7 0.022 7.5E-07 50.2 3.9 23 181-203 2-24 (206)
243 1zu4_A FTSY; GTPase, signal re 94.7 0.079 2.7E-06 50.0 8.0 39 178-218 104-142 (320)
244 3io3_A DEHA2D07832P; chaperone 94.6 0.051 1.7E-06 52.0 6.6 53 173-225 12-64 (348)
245 3lv8_A DTMP kinase, thymidylat 94.6 0.078 2.7E-06 47.6 7.4 36 179-215 27-62 (236)
246 2og2_A Putative signal recogni 94.6 0.077 2.6E-06 50.9 7.7 27 179-205 157-183 (359)
247 3l0o_A Transcription terminati 94.5 0.022 7.5E-07 54.6 3.7 52 169-221 164-217 (427)
248 1sq5_A Pantothenate kinase; P- 94.5 0.043 1.5E-06 51.7 5.8 28 177-204 78-105 (308)
249 3hjn_A DTMP kinase, thymidylat 94.5 0.1 3.4E-06 45.5 7.8 50 181-232 2-51 (197)
250 1e4v_A Adenylate kinase; trans 94.5 0.024 8.4E-07 50.1 3.8 23 181-203 2-24 (214)
251 2onk_A Molybdate/tungstate ABC 94.5 0.023 7.9E-07 51.4 3.6 25 177-202 23-47 (240)
252 1vht_A Dephospho-COA kinase; s 94.5 0.025 8.5E-07 50.2 3.8 23 179-201 4-26 (218)
253 3b9q_A Chloroplast SRP recepto 94.5 0.029 9.8E-07 52.7 4.4 28 178-205 99-126 (302)
254 3lnc_A Guanylate kinase, GMP k 94.5 0.014 4.8E-07 52.4 2.2 25 179-203 27-52 (231)
255 2xb4_A Adenylate kinase; ATP-b 94.5 0.025 8.6E-07 50.5 3.8 23 181-203 2-24 (223)
256 3zvl_A Bifunctional polynucleo 94.5 0.078 2.7E-06 52.2 7.7 27 177-203 256-282 (416)
257 3be4_A Adenylate kinase; malar 94.5 0.025 8.6E-07 50.2 3.8 24 180-203 6-29 (217)
258 1ak2_A Adenylate kinase isoenz 94.4 0.03 1E-06 50.3 4.3 26 179-204 16-41 (233)
259 3tif_A Uncharacterized ABC tra 94.4 0.02 6.7E-07 51.7 2.9 24 178-201 30-53 (235)
260 2f6r_A COA synthase, bifunctio 94.4 0.025 8.6E-07 52.5 3.7 23 178-200 74-96 (281)
261 4tmk_A Protein (thymidylate ki 94.4 0.094 3.2E-06 46.3 7.3 52 180-232 4-55 (213)
262 3iqw_A Tail-anchored protein t 94.3 0.063 2.1E-06 51.1 6.5 50 174-225 11-60 (334)
263 2pcj_A ABC transporter, lipopr 94.3 0.02 6.9E-07 51.2 2.9 24 179-202 30-53 (224)
264 3ld9_A DTMP kinase, thymidylat 94.3 0.083 2.8E-06 47.0 6.8 30 176-205 18-47 (223)
265 3d3q_A TRNA delta(2)-isopenten 94.3 0.027 9.1E-07 53.5 3.6 24 180-203 8-31 (340)
266 2yhs_A FTSY, cell division pro 94.3 0.091 3.1E-06 52.4 7.6 42 178-222 292-333 (503)
267 2eyu_A Twitching motility prot 94.2 0.078 2.7E-06 48.5 6.7 110 177-307 23-135 (261)
268 3crm_A TRNA delta(2)-isopenten 94.2 0.028 9.5E-07 53.0 3.6 24 180-203 6-29 (323)
269 4eaq_A DTMP kinase, thymidylat 94.2 0.064 2.2E-06 48.0 5.9 28 178-205 25-52 (229)
270 3b85_A Phosphate starvation-in 94.2 0.021 7.1E-07 50.4 2.6 23 180-202 23-45 (208)
271 2r8r_A Sensor protein; KDPD, P 94.2 0.1 3.4E-06 46.3 6.9 38 181-220 8-45 (228)
272 1a7j_A Phosphoribulokinase; tr 94.1 0.019 6.6E-07 53.5 2.4 27 178-204 4-30 (290)
273 2cbz_A Multidrug resistance-as 94.1 0.024 8.2E-07 51.2 2.9 26 178-203 30-55 (237)
274 3exa_A TRNA delta(2)-isopenten 94.1 0.032 1.1E-06 52.1 3.7 25 179-203 3-27 (322)
275 1yrb_A ATP(GTP)binding protein 94.1 0.039 1.3E-06 50.4 4.3 27 178-204 13-39 (262)
276 3foz_A TRNA delta(2)-isopenten 94.1 0.038 1.3E-06 51.6 4.1 26 178-203 9-34 (316)
277 1g8f_A Sulfate adenylyltransfe 94.0 0.054 1.8E-06 54.5 5.5 46 160-205 374-421 (511)
278 2d2e_A SUFC protein; ABC-ATPas 94.0 0.031 1E-06 50.9 3.4 24 179-202 29-52 (250)
279 1b0u_A Histidine permease; ABC 94.0 0.025 8.7E-07 51.8 2.9 25 178-202 31-55 (262)
280 3gfo_A Cobalt import ATP-bindi 94.0 0.026 8.9E-07 52.1 2.9 23 179-201 34-56 (275)
281 1oix_A RAS-related protein RAB 94.0 0.033 1.1E-06 48.2 3.5 24 180-203 30-53 (191)
282 1ji0_A ABC transporter; ATP bi 93.9 0.028 9.6E-07 50.8 2.9 24 179-202 32-55 (240)
283 4g1u_C Hemin import ATP-bindin 93.9 0.028 9.6E-07 51.7 2.9 24 179-202 37-60 (266)
284 2zu0_C Probable ATP-dependent 93.9 0.033 1.1E-06 51.2 3.4 25 178-202 45-69 (267)
285 1ltq_A Polynucleotide kinase; 93.9 0.034 1.2E-06 52.1 3.5 23 180-202 3-25 (301)
286 1sgw_A Putative ABC transporte 93.9 0.025 8.6E-07 50.1 2.5 23 180-202 36-58 (214)
287 1g6h_A High-affinity branched- 93.9 0.029 9.7E-07 51.4 2.9 24 179-202 33-56 (257)
288 2ff7_A Alpha-hemolysin translo 93.8 0.029 9.9E-07 51.0 2.9 24 179-202 35-58 (247)
289 2pze_A Cystic fibrosis transme 93.8 0.029 9.9E-07 50.3 2.9 25 179-203 34-58 (229)
290 2olj_A Amino acid ABC transpor 93.8 0.029 9.9E-07 51.5 2.9 25 178-202 49-73 (263)
291 2v9p_A Replication protein E1; 93.8 0.036 1.2E-06 51.9 3.5 27 177-203 124-150 (305)
292 3a8t_A Adenylate isopentenyltr 93.8 0.032 1.1E-06 52.7 3.2 25 179-203 40-64 (339)
293 4edh_A DTMP kinase, thymidylat 93.7 0.13 4.4E-06 45.5 6.9 32 179-211 6-37 (213)
294 1mv5_A LMRA, multidrug resista 93.7 0.031 1E-06 50.7 2.8 25 178-202 27-51 (243)
295 2ixe_A Antigen peptide transpo 93.7 0.032 1.1E-06 51.4 2.9 25 178-202 44-68 (271)
296 2orw_A Thymidine kinase; TMTK, 93.7 0.059 2E-06 46.5 4.4 27 180-206 4-30 (184)
297 2ghi_A Transport protein; mult 93.7 0.033 1.1E-06 51.1 2.9 25 178-202 45-69 (260)
298 1q3t_A Cytidylate kinase; nucl 93.6 0.054 1.8E-06 48.7 4.3 26 178-203 15-40 (236)
299 1nlf_A Regulatory protein REPA 93.6 0.047 1.6E-06 50.5 4.0 42 179-220 30-79 (279)
300 1vpl_A ABC transporter, ATP-bi 93.6 0.033 1.1E-06 50.9 2.9 25 178-202 40-64 (256)
301 2f9l_A RAB11B, member RAS onco 93.6 0.039 1.3E-06 48.0 3.3 23 180-202 6-28 (199)
302 2wji_A Ferrous iron transport 93.6 0.042 1.4E-06 46.2 3.3 22 180-201 4-25 (165)
303 2qi9_C Vitamin B12 import ATP- 93.6 0.034 1.2E-06 50.5 2.9 24 179-202 26-49 (249)
304 2zej_A Dardarin, leucine-rich 93.5 0.037 1.3E-06 47.5 2.9 21 181-201 4-24 (184)
305 2dyk_A GTP-binding protein; GT 93.5 0.048 1.6E-06 45.2 3.5 23 180-202 2-24 (161)
306 2ged_A SR-beta, signal recogni 93.5 0.092 3.2E-06 45.1 5.5 25 178-202 47-71 (193)
307 1cp2_A CP2, nitrogenase iron p 93.5 0.092 3.1E-06 48.1 5.8 39 180-220 2-40 (269)
308 2yz2_A Putative ABC transporte 93.5 0.036 1.2E-06 50.9 2.9 24 179-202 33-56 (266)
309 2ihy_A ABC transporter, ATP-bi 93.4 0.036 1.2E-06 51.3 2.9 24 179-202 47-70 (279)
310 3sop_A Neuronal-specific septi 93.4 0.044 1.5E-06 50.4 3.4 23 181-203 4-26 (270)
311 2nq2_C Hypothetical ABC transp 93.4 0.037 1.3E-06 50.5 2.8 25 179-203 31-55 (253)
312 2ck3_A ATP synthase subunit al 93.4 0.25 8.6E-06 49.1 8.9 91 180-270 163-273 (510)
313 2afh_E Nitrogenase iron protei 93.4 0.11 3.8E-06 48.2 6.2 39 180-220 3-41 (289)
314 3fvq_A Fe(3+) IONS import ATP- 93.3 0.044 1.5E-06 52.5 3.3 24 179-202 30-53 (359)
315 2v3c_C SRP54, signal recogniti 93.3 0.039 1.3E-06 54.5 3.0 37 179-217 99-135 (432)
316 3vr4_D V-type sodium ATPase su 93.3 0.12 4.2E-06 50.6 6.5 91 180-270 152-259 (465)
317 3eph_A TRNA isopentenyltransfe 93.3 0.055 1.9E-06 52.4 4.0 25 180-204 3-27 (409)
318 1u0j_A DNA replication protein 93.3 0.099 3.4E-06 47.7 5.4 38 165-202 88-127 (267)
319 2qmh_A HPR kinase/phosphorylas 93.3 0.035 1.2E-06 48.2 2.3 25 179-203 34-58 (205)
320 3kjh_A CO dehydrogenase/acetyl 93.3 0.097 3.3E-06 47.2 5.5 42 182-225 3-44 (254)
321 1svm_A Large T antigen; AAA+ f 93.3 0.056 1.9E-06 52.3 4.0 27 177-203 167-193 (377)
322 2ce2_X GTPase HRAS; signaling 93.2 0.051 1.7E-06 45.2 3.3 22 181-202 5-26 (166)
323 3mfy_A V-type ATP synthase alp 93.2 0.19 6.5E-06 50.4 7.7 90 178-271 226-336 (588)
324 4gzl_A RAS-related C3 botulinu 93.2 0.055 1.9E-06 47.3 3.5 27 176-202 27-53 (204)
325 1z2a_A RAS-related protein RAB 93.1 0.054 1.8E-06 45.2 3.3 23 180-202 6-28 (168)
326 1tf7_A KAIC; homohexamer, hexa 93.1 0.21 7.2E-06 50.8 8.2 84 179-267 281-379 (525)
327 2ocp_A DGK, deoxyguanosine kin 93.1 0.062 2.1E-06 48.4 3.8 25 179-203 2-26 (241)
328 3cr8_A Sulfate adenylyltranfer 93.1 0.087 3E-06 53.7 5.2 45 161-205 349-395 (552)
329 3fkq_A NTRC-like two-domain pr 93.0 0.3 1E-05 47.2 8.8 62 160-223 112-186 (373)
330 2c61_A A-type ATP synthase non 93.0 0.1 3.5E-06 51.6 5.4 91 180-270 153-260 (469)
331 4dzz_A Plasmid partitioning pr 93.0 0.14 4.6E-06 44.7 5.8 44 180-225 2-46 (206)
332 2pjz_A Hypothetical protein ST 93.0 0.047 1.6E-06 50.0 2.9 24 179-202 30-53 (263)
333 1z47_A CYSA, putative ABC-tran 93.0 0.055 1.9E-06 51.8 3.4 24 179-202 41-64 (355)
334 3cwq_A Para family chromosome 92.9 0.17 5.8E-06 44.4 6.4 43 181-226 2-45 (209)
335 2wjg_A FEOB, ferrous iron tran 92.9 0.061 2.1E-06 46.1 3.3 23 180-202 8-30 (188)
336 3nh6_A ATP-binding cassette SU 92.9 0.038 1.3E-06 51.9 2.1 25 178-202 79-103 (306)
337 2woj_A ATPase GET3; tail-ancho 92.9 0.2 6.7E-06 48.1 7.2 48 176-225 15-64 (354)
338 3rlf_A Maltose/maltodextrin im 92.9 0.056 1.9E-06 52.2 3.3 25 179-203 29-53 (381)
339 2yyz_A Sugar ABC transporter, 92.8 0.06 2E-06 51.7 3.4 25 178-202 28-52 (359)
340 3kta_A Chromosome segregation 92.8 0.071 2.4E-06 45.6 3.6 24 180-203 27-50 (182)
341 1r8s_A ADP-ribosylation factor 92.8 0.068 2.3E-06 44.5 3.5 21 182-202 3-23 (164)
342 1nrj_B SR-beta, signal recogni 92.8 0.078 2.7E-06 46.7 4.0 26 178-203 11-36 (218)
343 3con_A GTPase NRAS; structural 92.8 0.063 2.1E-06 46.1 3.3 23 180-202 22-44 (190)
344 3tui_C Methionine import ATP-b 92.8 0.059 2E-06 51.7 3.3 25 178-202 53-77 (366)
345 2it1_A 362AA long hypothetical 92.8 0.06 2.1E-06 51.7 3.4 25 178-202 28-52 (362)
346 1zj6_A ADP-ribosylation factor 92.8 0.12 4.1E-06 44.2 5.1 33 169-202 7-39 (187)
347 1u8z_A RAS-related protein RAL 92.8 0.065 2.2E-06 44.6 3.3 23 180-202 5-27 (168)
348 2woo_A ATPase GET3; tail-ancho 92.8 0.19 6.4E-06 47.7 6.8 44 176-221 16-59 (329)
349 1fzq_A ADP-ribosylation factor 92.8 0.084 2.9E-06 45.1 4.0 25 178-202 15-39 (181)
350 2bbs_A Cystic fibrosis transme 92.8 0.053 1.8E-06 50.5 2.9 26 178-203 63-88 (290)
351 1nij_A Hypothetical protein YJ 92.7 0.052 1.8E-06 51.3 2.9 25 178-202 3-27 (318)
352 2www_A Methylmalonic aciduria 92.7 0.16 5.3E-06 48.7 6.3 28 178-205 73-100 (349)
353 2nzj_A GTP-binding protein REM 92.7 0.061 2.1E-06 45.3 3.1 23 180-202 5-27 (175)
354 1kao_A RAP2A; GTP-binding prot 92.7 0.067 2.3E-06 44.5 3.3 22 181-202 5-26 (167)
355 1g29_1 MALK, maltose transport 92.7 0.064 2.2E-06 51.8 3.4 24 179-202 29-52 (372)
356 2gj8_A MNME, tRNA modification 92.7 0.063 2.2E-06 45.5 3.1 23 180-202 5-27 (172)
357 1c1y_A RAS-related protein RAP 92.7 0.069 2.4E-06 44.5 3.3 22 181-202 5-26 (167)
358 1v43_A Sugar-binding transport 92.7 0.064 2.2E-06 51.7 3.4 25 178-202 36-60 (372)
359 2yv5_A YJEQ protein; hydrolase 92.7 0.1 3.5E-06 48.9 4.7 31 167-200 156-186 (302)
360 2lkc_A Translation initiation 92.7 0.084 2.9E-06 44.6 3.9 25 178-202 7-31 (178)
361 3f9v_A Minichromosome maintena 92.6 0.03 1E-06 57.8 1.1 45 159-203 296-351 (595)
362 1z08_A RAS-related protein RAB 92.6 0.07 2.4E-06 44.7 3.3 23 180-202 7-29 (170)
363 3ihw_A Centg3; RAS, centaurin, 92.6 0.069 2.4E-06 45.8 3.3 23 180-202 21-43 (184)
364 2qe7_A ATP synthase subunit al 92.6 0.32 1.1E-05 48.3 8.2 87 180-270 163-265 (502)
365 1ek0_A Protein (GTP-binding pr 92.5 0.073 2.5E-06 44.5 3.3 23 181-203 5-27 (170)
366 1m7b_A RND3/RHOE small GTP-bin 92.5 0.071 2.4E-06 45.6 3.3 23 180-202 8-30 (184)
367 2qm8_A GTPase/ATPase; G protei 92.5 0.18 6.1E-06 48.0 6.4 29 177-205 53-81 (337)
368 1z0j_A RAB-22, RAS-related pro 92.5 0.074 2.5E-06 44.5 3.3 23 181-203 8-30 (170)
369 3q85_A GTP-binding protein REM 92.5 0.07 2.4E-06 44.7 3.1 20 181-200 4-23 (169)
370 3d31_A Sulfate/molybdate ABC t 92.5 0.054 1.9E-06 51.7 2.6 24 179-202 26-49 (348)
371 2vp4_A Deoxynucleoside kinase; 92.5 0.05 1.7E-06 48.8 2.2 25 178-202 19-43 (230)
372 3q72_A GTP-binding protein RAD 92.5 0.066 2.3E-06 44.7 2.9 20 181-200 4-23 (166)
373 1moz_A ARL1, ADP-ribosylation 92.5 0.078 2.7E-06 45.1 3.4 24 177-200 16-39 (183)
374 3v9p_A DTMP kinase, thymidylat 92.5 0.2 6.8E-06 44.6 6.2 28 179-206 25-52 (227)
375 4b3f_X DNA-binding protein smu 92.5 0.2 6.7E-06 52.4 7.1 62 165-231 193-254 (646)
376 1svi_A GTP-binding protein YSX 92.4 0.084 2.9E-06 45.5 3.6 25 178-202 22-46 (195)
377 1wms_A RAB-9, RAB9, RAS-relate 92.4 0.076 2.6E-06 44.8 3.3 23 180-202 8-30 (177)
378 1ky3_A GTP-binding protein YPT 92.4 0.077 2.6E-06 45.0 3.3 25 178-202 7-31 (182)
379 2h92_A Cytidylate kinase; ross 92.4 0.078 2.7E-06 46.9 3.4 24 180-203 4-27 (219)
380 1g16_A RAS-related protein SEC 92.4 0.078 2.7E-06 44.3 3.3 23 180-202 4-26 (170)
381 2fn4_A P23, RAS-related protei 92.3 0.078 2.7E-06 44.9 3.2 24 179-202 9-32 (181)
382 2erx_A GTP-binding protein DI- 92.3 0.075 2.6E-06 44.5 3.1 22 181-202 5-26 (172)
383 3fdi_A Uncharacterized protein 92.3 0.082 2.8E-06 46.3 3.4 25 180-204 7-31 (201)
384 2axn_A 6-phosphofructo-2-kinas 92.3 0.092 3.1E-06 53.2 4.2 28 178-205 34-61 (520)
385 2cjw_A GTP-binding protein GEM 92.3 0.085 2.9E-06 45.6 3.5 22 180-201 7-28 (192)
386 1ihu_A Arsenical pump-driving 92.3 0.23 7.9E-06 51.3 7.3 42 176-219 5-46 (589)
387 1r2q_A RAS-related protein RAB 92.3 0.083 2.8E-06 44.1 3.3 23 180-202 7-29 (170)
388 1m2o_B GTP-binding protein SAR 92.2 0.081 2.8E-06 45.6 3.3 24 179-202 23-46 (190)
389 3gqb_B V-type ATP synthase bet 92.2 0.2 7E-06 49.1 6.3 91 180-270 148-262 (464)
390 3zq6_A Putative arsenical pump 92.2 0.25 8.6E-06 46.7 6.9 47 179-227 14-60 (324)
391 3gd7_A Fusion complex of cysti 92.2 0.078 2.7E-06 51.5 3.4 24 178-201 46-69 (390)
392 3c5c_A RAS-like protein 12; GD 92.2 0.082 2.8E-06 45.4 3.3 23 180-202 22-44 (187)
393 1tq4_A IIGP1, interferon-induc 92.2 0.11 3.7E-06 50.9 4.4 24 178-201 68-91 (413)
394 1lw7_A Transcriptional regulat 92.2 0.075 2.6E-06 51.3 3.2 26 179-204 170-195 (365)
395 1upt_A ARL1, ADP-ribosylation 92.1 0.088 3E-06 44.1 3.3 23 180-202 8-30 (171)
396 3pqc_A Probable GTP-binding pr 92.1 0.1 3.5E-06 44.8 3.8 26 178-203 22-47 (195)
397 1z0f_A RAB14, member RAS oncog 92.1 0.089 3E-06 44.4 3.3 25 179-203 15-39 (179)
398 1f6b_A SAR1; gtpases, N-termin 92.1 0.12 4.1E-06 44.9 4.2 24 178-201 24-47 (198)
399 1oxx_K GLCV, glucose, ABC tran 92.1 0.052 1.8E-06 52.0 1.9 25 178-202 30-54 (353)
400 2qtf_A Protein HFLX, GTP-bindi 92.1 0.22 7.5E-06 47.9 6.3 25 178-202 178-202 (364)
401 1m8p_A Sulfate adenylyltransfe 92.0 0.14 4.8E-06 52.5 5.2 28 178-205 395-422 (573)
402 2atv_A RERG, RAS-like estrogen 92.0 0.1 3.5E-06 45.1 3.7 25 178-202 27-51 (196)
403 4dsu_A GTPase KRAS, isoform 2B 92.0 0.09 3.1E-06 44.9 3.3 23 181-203 6-28 (189)
404 3gmt_A Adenylate kinase; ssgci 92.0 0.1 3.5E-06 46.5 3.6 24 180-203 9-32 (230)
405 3bc1_A RAS-related protein RAB 92.0 0.091 3.1E-06 45.0 3.3 23 180-202 12-34 (195)
406 2iwr_A Centaurin gamma 1; ANK 92.0 0.069 2.4E-06 45.2 2.4 23 180-202 8-30 (178)
407 3dz8_A RAS-related protein RAB 92.0 0.097 3.3E-06 45.0 3.4 24 180-203 24-47 (191)
408 2y8e_A RAB-protein 6, GH09086P 91.9 0.093 3.2E-06 44.3 3.3 23 180-202 15-37 (179)
409 3vr4_A V-type sodium ATPase ca 91.9 0.41 1.4E-05 48.3 8.2 95 171-269 223-339 (600)
410 2bme_A RAB4A, RAS-related prot 91.9 0.093 3.2E-06 44.7 3.3 24 180-203 11-34 (186)
411 2ewv_A Twitching motility prot 91.9 0.15 5E-06 49.4 4.9 111 177-307 134-246 (372)
412 3kkq_A RAS-related protein M-R 91.9 0.095 3.2E-06 44.6 3.3 23 180-202 19-41 (183)
413 2p67_A LAO/AO transport system 91.9 0.24 8.2E-06 47.2 6.4 30 176-205 53-82 (341)
414 2oil_A CATX-8, RAS-related pro 91.9 0.095 3.3E-06 45.1 3.3 23 180-202 26-48 (193)
415 3ug7_A Arsenical pump-driving 91.9 0.27 9.2E-06 47.0 6.7 40 178-219 25-64 (349)
416 3cbq_A GTP-binding protein REM 91.8 0.071 2.4E-06 46.2 2.4 22 179-200 23-44 (195)
417 2hxs_A RAB-26, RAS-related pro 91.8 0.084 2.9E-06 44.6 2.8 23 180-202 7-29 (178)
418 3t1o_A Gliding protein MGLA; G 91.8 0.097 3.3E-06 45.0 3.3 23 180-202 15-37 (198)
419 3tqf_A HPR(Ser) kinase; transf 91.8 0.1 3.5E-06 44.0 3.2 23 180-202 17-39 (181)
420 2gks_A Bifunctional SAT/APS ki 91.8 0.19 6.6E-06 51.1 5.9 46 160-205 351-398 (546)
421 1mh1_A RAC1; GTP-binding, GTPa 91.8 0.099 3.4E-06 44.5 3.3 22 181-202 7-28 (186)
422 2cxx_A Probable GTP-binding pr 91.8 0.088 3E-06 45.0 3.0 22 181-202 3-24 (190)
423 3t5g_A GTP-binding protein RHE 91.8 0.1 3.4E-06 44.3 3.3 24 179-202 6-29 (181)
424 2a9k_A RAS-related protein RAL 91.7 0.1 3.5E-06 44.4 3.3 24 180-203 19-42 (187)
425 3bwd_D RAC-like GTP-binding pr 91.7 0.1 3.5E-06 44.2 3.3 24 179-202 8-31 (182)
426 2g6b_A RAS-related protein RAB 91.7 0.1 3.5E-06 44.1 3.3 23 180-202 11-33 (180)
427 2efe_B Small GTP-binding prote 91.7 0.1 3.5E-06 44.2 3.3 23 180-202 13-35 (181)
428 1p9r_A General secretion pathw 91.7 0.16 5.6E-06 49.7 5.0 35 169-204 158-192 (418)
429 3tw8_B RAS-related protein RAB 91.7 0.092 3.2E-06 44.4 2.9 23 179-201 9-31 (181)
430 2ew1_A RAS-related protein RAB 91.7 0.1 3.5E-06 45.5 3.3 23 180-202 27-49 (201)
431 1u0l_A Probable GTPase ENGC; p 91.7 0.16 5.4E-06 47.6 4.7 33 167-202 160-192 (301)
432 1pui_A ENGB, probable GTP-bind 91.7 0.057 1.9E-06 47.3 1.6 24 178-201 25-48 (210)
433 2bov_A RAla, RAS-related prote 91.6 0.11 3.6E-06 45.2 3.3 25 179-203 14-38 (206)
434 1gwn_A RHO-related GTP-binding 91.6 0.1 3.6E-06 45.6 3.3 24 179-202 28-51 (205)
435 2qnr_A Septin-2, protein NEDD5 91.6 0.082 2.8E-06 49.5 2.7 21 181-201 20-40 (301)
436 3oes_A GTPase rhebl1; small GT 91.5 0.11 3.7E-06 45.2 3.3 25 178-202 23-47 (201)
437 1zd9_A ADP-ribosylation factor 91.5 0.11 3.8E-06 44.5 3.3 23 180-202 23-45 (188)
438 1vg8_A RAS-related protein RAB 91.5 0.11 3.7E-06 45.2 3.3 25 179-203 8-32 (207)
439 2obl_A ESCN; ATPase, hydrolase 91.5 0.11 3.8E-06 49.6 3.5 27 178-204 70-96 (347)
440 2r9v_A ATP synthase subunit al 91.5 0.21 7.2E-06 49.7 5.5 87 180-270 176-278 (515)
441 1bif_A 6-phosphofructo-2-kinas 91.5 0.12 4.2E-06 51.6 4.0 28 178-205 38-65 (469)
442 2gza_A Type IV secretion syste 91.5 0.091 3.1E-06 50.6 2.9 24 180-203 176-199 (361)
443 2fg5_A RAB-22B, RAS-related pr 91.4 0.11 3.8E-06 44.7 3.2 24 180-203 24-47 (192)
444 2g3y_A GTP-binding protein GEM 91.4 0.11 3.6E-06 45.9 3.1 21 180-200 38-58 (211)
445 3clv_A RAB5 protein, putative; 91.4 0.11 3.8E-06 44.8 3.3 24 179-202 7-30 (208)
446 3reg_A RHO-like small GTPase; 91.4 0.12 3.9E-06 44.6 3.3 24 180-203 24-47 (194)
447 2fh5_B SR-beta, signal recogni 91.4 0.11 3.9E-06 45.5 3.3 25 179-203 7-31 (214)
448 2a5j_A RAS-related protein RAB 91.4 0.12 4E-06 44.5 3.3 23 180-202 22-44 (191)
449 2gf9_A RAS-related protein RAB 91.4 0.12 4E-06 44.4 3.3 23 180-202 23-45 (189)
450 2rcn_A Probable GTPase ENGC; Y 91.3 0.11 3.9E-06 49.6 3.4 22 180-201 216-237 (358)
451 2gf0_A GTP-binding protein DI- 91.3 0.12 4E-06 44.6 3.2 24 179-202 8-31 (199)
452 1ypw_A Transitional endoplasmi 91.2 0.066 2.3E-06 57.5 1.8 49 156-204 475-536 (806)
453 1z06_A RAS-related protein RAB 91.2 0.12 4.2E-06 44.3 3.3 24 179-202 20-43 (189)
454 3oaa_A ATP synthase subunit al 91.2 0.69 2.4E-05 45.9 8.9 87 180-270 163-265 (513)
455 3tkl_A RAS-related protein RAB 91.2 0.12 4.2E-06 44.4 3.3 24 180-203 17-40 (196)
456 1p5z_B DCK, deoxycytidine kina 91.2 0.06 2.1E-06 49.3 1.3 26 178-203 23-48 (263)
457 4dkx_A RAS-related protein RAB 91.2 0.12 4.2E-06 45.7 3.3 22 181-202 15-36 (216)
458 2b6h_A ADP-ribosylation factor 91.2 0.095 3.3E-06 45.2 2.5 24 178-201 28-51 (192)
459 2p5s_A RAS and EF-hand domain 91.1 0.13 4.3E-06 44.6 3.3 25 178-202 27-51 (199)
460 3q3j_B RHO-related GTP-binding 91.1 0.14 4.8E-06 45.1 3.6 23 180-202 28-50 (214)
461 2bcg_Y Protein YP2, GTP-bindin 91.0 0.13 4.4E-06 44.8 3.3 23 180-202 9-31 (206)
462 1x3s_A RAS-related protein RAB 91.0 0.13 4.5E-06 44.1 3.3 24 180-203 16-39 (195)
463 2npi_A Protein CLP1; CLP1-PCF1 91.0 0.11 3.9E-06 51.6 3.1 26 178-203 137-162 (460)
464 1zbd_A Rabphilin-3A; G protein 90.9 0.13 4.3E-06 44.7 3.1 23 180-202 9-31 (203)
465 2oze_A ORF delta'; para, walke 90.9 0.51 1.7E-05 43.8 7.5 53 167-222 23-78 (298)
466 3llu_A RAS-related GTP-binding 90.9 0.11 3.6E-06 45.0 2.6 23 179-201 20-42 (196)
467 1ksh_A ARF-like protein 2; sma 90.9 0.14 4.9E-06 43.6 3.4 26 177-202 16-41 (186)
468 3tmk_A Thymidylate kinase; pho 90.9 0.17 5.8E-06 44.7 3.8 27 179-205 5-31 (216)
469 2fv8_A H6, RHO-related GTP-bin 90.8 0.14 4.7E-06 44.8 3.2 23 180-202 26-48 (207)
470 3lxx_A GTPase IMAP family memb 90.8 0.13 4.4E-06 46.2 3.1 25 178-202 28-52 (239)
471 1x6v_B Bifunctional 3'-phospho 90.8 0.16 5.4E-06 52.4 4.1 28 178-205 51-78 (630)
472 2qu8_A Putative nucleolar GTP- 90.8 0.16 5.3E-06 45.2 3.6 25 178-202 28-52 (228)
473 3hdt_A Putative kinase; struct 90.7 0.17 6E-06 44.9 3.8 26 179-204 14-39 (223)
474 1ega_A Protein (GTP-binding pr 90.7 0.13 4.6E-06 48.0 3.2 24 179-202 8-31 (301)
475 2atx_A Small GTP binding prote 90.7 0.14 4.9E-06 44.0 3.2 23 180-202 19-41 (194)
476 3ch4_B Pmkase, phosphomevalona 90.7 0.22 7.5E-06 43.3 4.3 26 178-203 10-35 (202)
477 2qag_B Septin-6, protein NEDD5 90.7 0.12 4E-06 50.7 2.9 21 182-202 45-65 (427)
478 2o52_A RAS-related protein RAB 90.7 0.14 4.7E-06 44.5 3.1 24 179-202 25-48 (200)
479 2q3h_A RAS homolog gene family 90.7 0.14 4.7E-06 44.4 3.1 24 179-202 20-43 (201)
480 2hup_A RAS-related protein RAB 90.6 0.15 5E-06 44.4 3.2 24 179-202 29-52 (201)
481 2dpy_A FLII, flagellum-specifi 90.6 0.15 5E-06 50.5 3.5 27 177-203 155-181 (438)
482 2j0v_A RAC-like GTP-binding pr 90.6 0.15 5.1E-06 44.6 3.3 23 180-202 10-32 (212)
483 4bas_A ADP-ribosylation factor 90.6 0.14 4.9E-06 44.1 3.1 25 178-202 16-40 (199)
484 1wcv_1 SOJ, segregation protei 90.6 0.26 8.8E-06 44.8 5.0 41 178-220 5-46 (257)
485 2fz4_A DNA repair protein RAD2 90.6 0.37 1.3E-05 43.2 6.0 38 163-203 95-132 (237)
486 2gco_A H9, RHO-related GTP-bin 90.6 0.15 5.2E-06 44.2 3.3 23 180-202 26-48 (201)
487 3cph_A RAS-related protein SEC 90.5 0.15 5.2E-06 44.5 3.3 24 179-202 20-43 (213)
488 2j1l_A RHO-related GTP-binding 90.5 0.14 4.9E-06 45.0 3.1 23 180-202 35-57 (214)
489 2fu5_C RAS-related protein RAB 90.5 0.086 2.9E-06 44.9 1.5 23 180-202 9-31 (183)
490 2pt7_A CAG-ALFA; ATPase, prote 90.5 0.1 3.5E-06 49.6 2.1 85 180-275 172-256 (330)
491 3k53_A Ferrous iron transport 90.4 0.16 5.5E-06 46.6 3.4 23 180-202 4-26 (271)
492 1mky_A Probable GTP-binding pr 90.4 0.28 9.5E-06 48.6 5.4 43 161-203 151-204 (439)
493 2aka_B Dynamin-1; fusion prote 90.4 0.31 1.1E-05 45.2 5.5 36 167-202 8-49 (299)
494 2il1_A RAB12; G-protein, GDP, 90.4 0.15 5E-06 44.0 2.9 24 180-203 27-50 (192)
495 2h17_A ADP-ribosylation factor 90.4 0.13 4.6E-06 43.7 2.7 23 180-202 22-44 (181)
496 1c9k_A COBU, adenosylcobinamid 90.3 0.15 5.1E-06 43.5 2.9 33 182-220 2-34 (180)
497 4hlc_A DTMP kinase, thymidylat 90.3 0.29 1E-05 42.8 4.8 25 180-204 3-27 (205)
498 1byi_A Dethiobiotin synthase; 90.2 0.23 8E-06 43.8 4.3 27 180-206 2-29 (224)
499 3igf_A ALL4481 protein; two-do 90.2 0.23 7.8E-06 47.9 4.4 42 180-224 3-44 (374)
500 3euj_A Chromosome partition pr 90.2 0.16 5.6E-06 50.6 3.4 25 180-204 30-54 (483)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.2e-48 Score=402.18 Aligned_cols=298 Identities=14% Similarity=0.141 Sum_probs=232.7
Q ss_pred ccHHHHHHHHHHHhccC---CccEEEEEcCCCCcHHHHHHHHHH--HHhHccCCCeEEEEEeCCCC--CHHHHHHHHHHH
Q 042728 161 DSRMKVFQDVMEALRDD---KLNIIGVHGMGGVGKTTIVKQVAK--QVMEENLFDKVVMAEVTQTP--DHHKIQNKLAFD 233 (486)
Q Consensus 161 ~gR~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~ 233 (486)
+||+.++++|.++|..+ ..++|+|+||||+||||||+++|+ +...+.+|++++||++++.+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999643 679999999999999999999998 45667789999999999885 789999999999
Q ss_pred hCCCCC-------CCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeCchh
Q 042728 234 LGMEFG-------LNENEFQRAERLHERLKKEKQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQD 306 (486)
Q Consensus 234 l~~~~~-------~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 306 (486)
++.... ...+...+...+.+.|.++|||||||||||+.+.+ .+ + ..+||+||||||+..
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~---------~~~gs~ilvTTR~~~ 276 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A---------QELRLRCLVTTRDVE 276 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H---------HHTTCEEEEEESBGG
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----c---------ccCCCEEEEEcCCHH
Confidence 976521 12245667888999998534999999999998755 22 1 226999999999999
Q ss_pred hhhhhcC-CcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhcCCCHHHHHHHHHHH
Q 042728 307 LLRIDMN-SQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANALKTKELDFWKDALNQL 385 (486)
Q Consensus 307 v~~~~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~~w~~~l~~l 385 (486)
++. .++ ....|+|++|+.++||+||.+.++....++.+.+++++|+++|+|+||||+++|+.|+.++ |..+ +.+
T Consensus 277 v~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l 351 (549)
T 2a5y_B 277 ISN-AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQL 351 (549)
T ss_dssp GGG-GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHH
T ss_pred HHH-HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHh
Confidence 986 343 4467999999999999999999886544578888999999999999999999999998664 4333 333
Q ss_pred hcCchhhhccchhhhHHHHHHhHhcCCchhHhHHHH-----------hhcCCCCCcccchhhHHHHHHhc--ccCCCCCC
Q 042728 386 RRSDAREIHGMQANVYTSIKLSYDFLESEEAKSLFR-----------LCGLYSEGYVIQVSNLLRYGVGW--RLFENVYT 452 (486)
Q Consensus 386 ~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~l-----------~~s~fp~~~~i~~~~Li~~Wiae--g~i~~~~~ 452 (486)
.... ++. ....+..++.+||+.||++ +|.||+ |||+||+++.|+ +++|+|+ ||+.....
T Consensus 352 ~~~l-~~~--~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~ 423 (549)
T 2a5y_B 352 NNKL-ESR--GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEE 423 (549)
T ss_dssp HHHH-HHH--CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------
T ss_pred HHHh-hcc--cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCC
Confidence 2221 111 1356788999999999998 999999 999999999999 8999999 99975321
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCC--CCCceecCC
Q 042728 453 SEEARSRVHRLIDNLKSSCLLLDGD--AKDEVKMHD 486 (486)
Q Consensus 453 ~~~~~~~~~~~~~~L~~~~ll~~~~--~~~~~~mHD 486 (486)
....++..+ ++++|+++||++... ...+|+|||
T Consensus 424 ~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHd 458 (549)
T 2a5y_B 424 EQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDH 458 (549)
T ss_dssp CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCH
T ss_pred CCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeCh
Confidence 111223333 899999999999643 356799997
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.9e-41 Score=357.97 Aligned_cols=277 Identities=18% Similarity=0.211 Sum_probs=219.6
Q ss_pred cccHHHHHHHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCe-EEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042728 160 FDSRMKVFQDVMEALRD-DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDK-VVMAEVTQTPDHHKIQNKLAFDLGME 237 (486)
Q Consensus 160 ~~gR~~~~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~vs~~~~~~~~~~~i~~~l~~~ 237 (486)
.+||+.++++|.++|.+ +..++|+|+||||+||||||++++++.+.+.+|+. ++|+++++.++...++..|++.++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 49999999999999965 56789999999999999999999987666667986 99999999999888888887754221
Q ss_pred ---CC--C------CCCHHHHHHHHHHHHh--cCCcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeCc
Q 042728 238 ---FG--L------NENEFQRAERLHERLK--KEKQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSRK 304 (486)
Q Consensus 238 ---~~--~------~~~~~~~~~~l~~~L~--~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~ 304 (486)
.. . +.+.+.....+.+.|. .++|+||||||+|+.+.|+.+. .||+||||||+
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~---------------pGSRILVTTRd 274 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN---------------LSCKILLTTRF 274 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH---------------SSCCEEEECSC
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC---------------CCeEEEEeccC
Confidence 00 0 1123445566666662 2589999999999988887651 38999999999
Q ss_pred hhhhhhhcCCcccEEcC------CCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhcCC--CHH
Q 042728 305 QDLLRIDMNSQKNFQID------ALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANALKTK--ELD 376 (486)
Q Consensus 305 ~~v~~~~~~~~~~~~l~------~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~--~~~ 376 (486)
..++. .+.....+.++ +|+.+|||+||++..+.. . .++..+| |+|+||||.++|+.|+.+ +..
T Consensus 275 ~~Va~-~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~--~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~e 345 (1221)
T 1vt4_I 275 KQVTD-FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--P---QDLPREV---LTTNPRRLSIIAESIRDGLATWD 345 (1221)
T ss_dssp SHHHH-HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC--T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHH
T ss_pred hHHHH-hcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC--H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHH
Confidence 99875 23323356666 999999999999986432 1 2233333 999999999999999954 677
Q ss_pred HHHHHHHHHhcCchhhhccchhhhHHHHHHhHhcCCchhH-hHHHHhhcCCCCCcccchhhHHHHHHhcccCCCCCChHH
Q 042728 377 FWKDALNQLRRSDAREIHGMQANVYTSIKLSYDFLESEEA-KSLFRLCGLYSEGYVIQVSNLLRYGVGWRLFENVYTSEE 455 (486)
Q Consensus 377 ~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~-k~c~l~~s~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~ 455 (486)
+|... ....+..+|.+||+.||++ . |.||+|||+||+++.|+.+.++.+|+++| .+
T Consensus 346 eW~~~--------------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeG-------ee- 402 (1221)
T 1vt4_I 346 NWKHV--------------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-------KS- 402 (1221)
T ss_dssp HHHHC--------------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-------SH-
T ss_pred HHhcC--------------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-------HH-
Confidence 88642 1256889999999999998 8 99999999999999999999999999887 11
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCceecCC
Q 042728 456 ARSRVHRLIDNLKSSCLLLDGDAKDEVKMHD 486 (486)
Q Consensus 456 ~~~~~~~~~~~L~~~~ll~~~~~~~~~~mHD 486 (486)
.+..++++|+++|||+..+...+|+|||
T Consensus 403 ---dAe~~L~eLvdRSLLq~d~~~~rYrMHD 430 (1221)
T 1vt4_I 403 ---DVMVVVNKLHKYSLVEKQPKESTISIPS 430 (1221)
T ss_dssp ---HHHHHHHHHHTSSSSSBCSSSSEEBCCC
T ss_pred ---HHHHHHHHHHhhCCEEEeCCCCEEEehH
Confidence 2556899999999999866567899998
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.5e-40 Score=375.85 Aligned_cols=302 Identities=18% Similarity=0.289 Sum_probs=241.7
Q ss_pred ccCccccccHHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhH-cc-CCCeEEEEEeCCCCC--HHHHH
Q 042728 154 VKDFEAFDSRMKVFQDVMEALR--DDKLNIIGVHGMGGVGKTTIVKQVAKQVME-EN-LFDKVVMAEVTQTPD--HHKIQ 227 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~-~f~~~~wv~vs~~~~--~~~~~ 227 (486)
+.....|+||++++++|.+.|. ++..++|+|+||||+||||||++++++... .. .|+.++|+++++... ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 3446679999999999999994 356789999999999999999999987643 33 457888999998653 34456
Q ss_pred HHHHHHhCCCC----CCCCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEe
Q 042728 228 NKLAFDLGMEF----GLNENEFQRAERLHERLKK-EKQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTS 302 (486)
Q Consensus 228 ~~i~~~l~~~~----~~~~~~~~~~~~l~~~L~~-~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTt 302 (486)
..++..+.... ..+.+.+.....+...+.+ ++|+||||||+|+...|..+ ++||+|||||
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~---------------~~~~~ilvTt 264 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF---------------DNQCQILLTT 264 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT---------------CSSCEEEEEE
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh---------------cCCCEEEEEc
Confidence 77777776532 2345677888888888874 23999999999988766554 3489999999
Q ss_pred CchhhhhhhcCCcccEEcCC-CChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhcCCCHHHHHHH
Q 042728 303 RKQDLLRIDMNSQKNFQIDA-LPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANALKTKELDFWKDA 381 (486)
Q Consensus 303 R~~~v~~~~~~~~~~~~l~~-L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~~w~~~ 381 (486)
|+..++....+....+++.+ |+.+++++||...++.. .+.+.+.+++|+++|+|+||||.++|++|+.++ .+|..+
T Consensus 265 R~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~ 341 (1249)
T 3sfz_A 265 RDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYY 341 (1249)
T ss_dssp SSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHH
T ss_pred CCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHH
Confidence 99999854566778899996 99999999999988632 334456799999999999999999999999655 579999
Q ss_pred HHHHhcCchhhhc----cchhhhHHHHHHhHhcCCchhHhHHHHhhcCCCCCcccchhhHHHHHHhcccCCCCCChHHHH
Q 042728 382 LNQLRRSDAREIH----GMQANVYTSIKLSYDFLESEEAKSLFRLCGLYSEGYVIQVSNLLRYGVGWRLFENVYTSEEAR 457 (486)
Q Consensus 382 l~~l~~~~~~~~~----~~~~~v~~~l~~sy~~L~~~~~k~c~l~~s~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~ 457 (486)
++.+.......+. .....+..+|.+||+.||++ +|.||+|||+||+++.|+.+.++.+|.+++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------ 408 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET------------ 408 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------
T ss_pred HHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------
Confidence 9998766543221 12257999999999999998 999999999999999999999999996652
Q ss_pred HHHHHHHHHHHHhcccccCCC--CCceecCC
Q 042728 458 SRVHRLIDNLKSSCLLLDGDA--KDEVKMHD 486 (486)
Q Consensus 458 ~~~~~~~~~L~~~~ll~~~~~--~~~~~mHD 486 (486)
..+..++++|+++||++.... ..+|+|||
T Consensus 409 ~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~ 439 (1249)
T 3sfz_A 409 EEVEDILQEFVNKSLLFCNRNGKSFCYYLHD 439 (1249)
T ss_dssp HHHHHHHHHHHHTTSCEEEESSSSEEEECCH
T ss_pred HHHHHHHHHHHhccceEEecCCCceEEEecH
Confidence 335667999999999985432 33699996
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=320.57 Aligned_cols=297 Identities=20% Similarity=0.331 Sum_probs=227.3
Q ss_pred CccccccHHHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHHhH-ccCC-CeEEEEEeCCCCCHHHHHHHH-
Q 042728 156 DFEAFDSRMKVFQDVMEALRD--DKLNIIGVHGMGGVGKTTIVKQVAKQVME-ENLF-DKVVMAEVTQTPDHHKIQNKL- 230 (486)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~vs~~~~~~~~~~~i- 230 (486)
.+..|+||+.++++|.+.|.. ++.++|+|+|+||+||||||.+++++... ..+| +.++|++++.. +...++..+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 456799999999999999963 46789999999999999999999987644 4568 58999999876 333444443
Q ss_pred --HHHhCCC----CCCCCCHHHHHHHHHHHHhcC-CcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeC
Q 042728 231 --AFDLGME----FGLNENEFQRAERLHERLKKE-KQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSR 303 (486)
Q Consensus 231 --~~~l~~~----~~~~~~~~~~~~~l~~~L~~~-kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 303 (486)
+..++.. .....+.......+...+.+. +++||||||+|+...+..+ ..+++||||||
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l---------------~~~~~ilvTsR 265 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF---------------DSQCQILLTTR 265 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT---------------CSSCEEEEEES
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh---------------cCCCeEEEECC
Confidence 4455421 122456677788888888753 6899999999987655432 24789999999
Q ss_pred chhhhhhhcCCcccEEc---CCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhcCCCHHHHHH
Q 042728 304 KQDLLRIDMNSQKNFQI---DALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANALKTKELDFWKD 380 (486)
Q Consensus 304 ~~~v~~~~~~~~~~~~l---~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~~w~~ 380 (486)
+..++.... ...+++ ++|+.+|+++||...++.. .....+.+.+|+++|+|+||||..+|+.|+... .+|..
T Consensus 266 ~~~~~~~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~ 340 (591)
T 1z6t_A 266 DKSVTDSVM--GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEY 340 (591)
T ss_dssp CGGGGTTCC--SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHH
T ss_pred CcHHHHhcC--CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHH
Confidence 998875222 233443 6899999999999998742 222345789999999999999999999998543 47999
Q ss_pred HHHHHhcCchhhh----ccchhhhHHHHHHhHhcCCchhHhHHHHhhcCCCCCcccchhhHHHHHHhcccCCCCCChHHH
Q 042728 381 ALNQLRRSDAREI----HGMQANVYTSIKLSYDFLESEEAKSLFRLCGLYSEGYVIQVSNLLRYGVGWRLFENVYTSEEA 456 (486)
Q Consensus 381 ~l~~l~~~~~~~~----~~~~~~v~~~l~~sy~~L~~~~~k~c~l~~s~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~ 456 (486)
+++.+.......+ .....++..++..||+.||++ .|.||++||+||+++.|+.+.+..+|.++ .
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~--------~--- 408 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDME--------T--- 408 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCC--------H---
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccC--------H---
Confidence 9998876543221 122357899999999999998 99999999999999999999999999653 1
Q ss_pred HHHHHHHHHHHHHhcccccC--CCCCceecCC
Q 042728 457 RSRVHRLIDNLKSSCLLLDG--DAKDEVKMHD 486 (486)
Q Consensus 457 ~~~~~~~~~~L~~~~ll~~~--~~~~~~~mHD 486 (486)
..+..++++|+++||++.. +...+|+|||
T Consensus 409 -~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~ 439 (591)
T 1z6t_A 409 -EEVEDILQEFVNKSLLFCDRNGKSFRYYLHD 439 (591)
T ss_dssp -HHHHHHHHHHHHTTSSEEEEETTEEEEECCH
T ss_pred -HHHHHHHHHHHhCcCeEEecCCCccEEEEcH
Confidence 2245679999999999843 3345799996
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.76 E-value=5.8e-17 Score=158.55 Aligned_cols=289 Identities=14% Similarity=0.111 Sum_probs=175.0
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC------CHHHHHH
Q 042728 155 KDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP------DHHKIQN 228 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~------~~~~~~~ 228 (486)
..+..|+||+.+++.|.+++..+ +++.|+|++|+|||||++++++.. . ++|+++.... +...++.
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHH
Confidence 34567999999999999998764 789999999999999999998763 2 6788765432 5666777
Q ss_pred HHHHHhCC---------------CCCC---CCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcccc-----ccccCCCCCcc
Q 042728 229 KLAFDLGM---------------EFGL---NENEFQRAERLHERLKKEKQLLIILDNIWTKLEL-----DKFGIPTGDVA 285 (486)
Q Consensus 229 ~i~~~l~~---------------~~~~---~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~-----~~l~~~~~~~~ 285 (486)
.+...+.. .... ..+..+....+.+.....++++|||||++....+ ..+...+..
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~-- 157 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY-- 157 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH--
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH--
Confidence 77666542 0010 1344555555655554323899999999875431 111000000
Q ss_pred cccccCCCCCcEEEEEeCchhhhhhh----------c-CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHH
Q 042728 286 EKDRKDDQRRCTIILTSRKQDLLRID----------M-NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVE 354 (486)
Q Consensus 286 ~~~~~~~~~~s~ilvTtR~~~v~~~~----------~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~ 354 (486)
+. ....+.++|+|++........ . .....+++.+|+.+|+.+++...+...... ...+.+..|++
T Consensus 158 --~~-~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~~~~~~~~i~~ 233 (350)
T 2qen_A 158 --AY-DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-VPENEIEEAVE 233 (350)
T ss_dssp --HH-HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHH
T ss_pred --HH-HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Confidence 00 022478899998876431111 1 112479999999999999998865322111 12457789999
Q ss_pred HcCCChHHHHHHHHHhcC-CCHHHHHHHHHHHhcCchhhhccchhhhHHHHHHhHhcC---CchhHhHHHHhhcCCCCCc
Q 042728 355 RCGGLPVALSTVANALKT-KELDFWKDALNQLRRSDAREIHGMQANVYTSIKLSYDFL---ESEEAKSLFRLCGLYSEGY 430 (486)
Q Consensus 355 ~~~GlPlai~~~~~~L~~-~~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L---~~~~~k~c~l~~s~fp~~~ 430 (486)
.|+|+|+++..++..+.. .+...+ ...+.. .+...+.-.+..+ ++. .+..+..+|. +
T Consensus 234 ~tgG~P~~l~~~~~~~~~~~~~~~~---~~~~~~-----------~~~~~~~~~l~~l~~~~~~-~~~~l~~la~---g- 294 (350)
T 2qen_A 234 LLDGIPGWLVVFGVEYLRNGDFGRA---MKRTLE-----------VAKGLIMGELEELRRRSPR-YVDILRAIAL---G- 294 (350)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHHHH---HHHHHH-----------HHHHHHHHHHHHHHHHCHH-HHHHHHHHHT---T-
T ss_pred HhCCCHHHHHHHHHHHhccccHhHH---HHHHHH-----------HHHHHHHHHHHHHHhCChh-HHHHHHHHHh---C-
Confidence 999999999999876532 222222 111100 0111111112222 666 8999999988 2
Q ss_pred ccchhhHHHHHHhcccCCCCCChHHHHHHHHHHHHHHHHhcccccCCCCCceecCC
Q 042728 431 VIQVSNLLRYGVGWRLFENVYTSEEARSRVHRLIDNLKSSCLLLDGDAKDEVKMHD 486 (486)
Q Consensus 431 ~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~mHD 486 (486)
.++...+....-.. . ...+. ..+..+++.|++.+++...+ ..|++||
T Consensus 295 ~~~~~~l~~~~~~~-~--~~~~~----~~~~~~l~~L~~~gli~~~~--~~y~~~~ 341 (350)
T 2qen_A 295 YNRWSLIRDYLAVK-G--TKIPE----PRLYALLENLKKMNWIVEED--NTYKIAD 341 (350)
T ss_dssp CCSHHHHHHHHHHT-T--CCCCH----HHHHHHHHHHHHTTSEEEET--TEEEESS
T ss_pred CCCHHHHHHHHHHH-h--CCCCH----HHHHHHHHHHHhCCCEEecC--CEEEEec
Confidence 24556665543221 0 01121 23456788899999997653 3466654
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.74 E-value=1.3e-16 Score=159.75 Aligned_cols=296 Identities=15% Similarity=0.071 Sum_probs=181.8
Q ss_pred ccccccHHHHHHHHHHHh-c----c--CCccEEEE--EcCCCCcHHHHHHHHHHHHhHc---cCCC-eEEEEEeCCCCCH
Q 042728 157 FEAFDSRMKVFQDVMEAL-R----D--DKLNIIGV--HGMGGVGKTTIVKQVAKQVMEE---NLFD-KVVMAEVTQTPDH 223 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L-~----~--~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~---~~f~-~~~wv~vs~~~~~ 223 (486)
+..|+||+.+++.|.+.+ . . .....+.| +|++|+|||||++.+++..... ..+. .++|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 467999999999999888 3 2 24567777 9999999999999999887542 1122 4678887777889
Q ss_pred HHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHHh-cCCcEEEEEeCCCCccc--------cccccCCCCCcccccccCCC
Q 042728 224 HKIQNKLAFDLGMEFGL-NENEFQRAERLHERLK-KEKQLLIILDNIWTKLE--------LDKFGIPTGDVAEKDRKDDQ 293 (486)
Q Consensus 224 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~L~-~~kr~LlVlDdv~~~~~--------~~~l~~~~~~~~~~~~~~~~ 293 (486)
..++..++.+++...+. ..+.......+.+.+. .+++++|||||++.... +..+...+.. . ...+
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~----~-~~~~ 175 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEE----I-PSRD 175 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHH----S-CCTT
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHh----c-ccCC
Confidence 99999999999765431 3345566666776665 25789999999986421 2111111100 0 0012
Q ss_pred --CCcEEEEEeCchhhhh-------hh-cCCcccEEcCCCChHHHHHHHHHHhCC-CCCCCchHHHHHHHHHHcC-----
Q 042728 294 --RRCTIILTSRKQDLLR-------ID-MNSQKNFQIDALPPKEALQLFEEIVGD-STKISAFQSTANEIVERCG----- 357 (486)
Q Consensus 294 --~~s~ilvTtR~~~v~~-------~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~~~----- 357 (486)
.+..+|+||+...... .. ......+.+++|+.++.+++|...+.. .....-..+....|++.|+
T Consensus 176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGG 255 (412)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTS
T ss_pred CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccC
Confidence 4456888887654321 01 111223999999999999999865431 0111122467888999999
Q ss_pred -CChHHHHHHHHHhc------C---CCHHHHHHHHHHHhcCchhhhccchhhhHHHHHHhHhcCCchhHhHHHHhhcCCC
Q 042728 358 -GLPVALSTVANALK------T---KELDFWKDALNQLRRSDAREIHGMQANVYTSIKLSYDFLESEEAKSLFRLCGLYS 427 (486)
Q Consensus 358 -GlPlai~~~~~~L~------~---~~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~l~~s~fp 427 (486)
|+|..+..+..... + -+...+..++..... ...+..++..||++ .+.++..++.+.
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l~ 321 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSIH-ELIILRLIAEAT 321 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCHH-HHHHHHHHHHHH
Confidence 99976665544321 1 122333333321100 12345567889988 899998888653
Q ss_pred --CCcccchhhHHHHHH--h-cccCCCCCChHHHHHHHHHHHHHHHHhccccc
Q 042728 428 --EGYVIQVSNLLRYGV--G-WRLFENVYTSEEARSRVHRLIDNLKSSCLLLD 475 (486)
Q Consensus 428 --~~~~i~~~~Li~~Wi--a-eg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 475 (486)
.+..++...+...+. + .-+-....+ ...+..++++|++.+++..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~L~~~gli~~ 370 (412)
T 1w5s_A 322 LGGMEWINAGLLRQRYEDASLTMYNVKPRG----YTQYHIYLKHLTSLGLVDA 370 (412)
T ss_dssp HTTCSSBCHHHHHHHHHHHHHHHSCCCCCC----HHHHHHHHHHHHHTTSEEE
T ss_pred hcCCCCccHHHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHhCCCEEe
Confidence 234566666655442 2 111001111 1335567899999999974
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.74 E-value=3e-16 Score=153.77 Aligned_cols=283 Identities=15% Similarity=0.158 Sum_probs=165.5
Q ss_pred CccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC-----CCHHHHHHHH
Q 042728 156 DFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT-----PDHHKIQNKL 230 (486)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-----~~~~~~~~~i 230 (486)
.+..|+||+.+++.|.+ +.. +++.|+|++|+|||||++.+.+.... ..+|+++... .+...++..+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHHH
Confidence 45679999999999999 865 68999999999999999999987631 2578887642 3445555555
Q ss_pred HHHhC--------------C----CCC-----------CCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc-----ccc
Q 042728 231 AFDLG--------------M----EFG-----------LNENEFQRAERLHERLKKEKQLLIILDNIWTKLE-----LDK 276 (486)
Q Consensus 231 ~~~l~--------------~----~~~-----------~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~-----~~~ 276 (486)
.+.+. . ..+ ...........+.+. .. ++++|||||++.... +..
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~-~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQA-SK-DNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHT-CS-SCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhc-CC-CCeEEEEECHHHhhccCchhHHH
Confidence 44331 0 000 012233333333222 11 389999999976432 111
Q ss_pred ccCCCCCcccccccCCCCCcEEEEEeCchhhhhhh---------c-CC-cccEEcCCCChHHHHHHHHHHhCC-CCCCCc
Q 042728 277 FGIPTGDVAEKDRKDDQRRCTIILTSRKQDLLRID---------M-NS-QKNFQIDALPPKEALQLFEEIVGD-STKISA 344 (486)
Q Consensus 277 l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~---------~-~~-~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~ 344 (486)
+...+ . ....+.++|+|++........ . +. ...+.+.+|+.+++.+++...+.. ......
T Consensus 160 ~l~~~-------~-~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~ 231 (357)
T 2fna_A 160 ALAYA-------Y-DNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD 231 (357)
T ss_dssp HHHHH-------H-HHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHH-------H-HcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc
Confidence 10111 0 022477899999976532111 1 11 257999999999999999886531 111122
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHhc-CCCHHHHHHHHHHHhcCchhhhccchhhhHHHHH-HhH--hcCCchhHhHHH
Q 042728 345 FQSTANEIVERCGGLPVALSTVANALK-TKELDFWKDALNQLRRSDAREIHGMQANVYTSIK-LSY--DFLESEEAKSLF 420 (486)
Q Consensus 345 ~~~~~~~i~~~~~GlPlai~~~~~~L~-~~~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~-~sy--~~L~~~~~k~c~ 420 (486)
. ..|++.|+|+|+++..++..+. ..+...|. ..+... . ...+..-+. +.+ ..||+. .+..+
T Consensus 232 ---~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~---~~~~~~----~---~~~~~~~l~~~~~~~~~l~~~-~~~~l 296 (357)
T 2fna_A 232 ---Y-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAI---NQTLEY----A---KKLILKEFENFLHGREIARKR-YLNIM 296 (357)
T ss_dssp ---H-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHH---HHHHHH----H---HHHHHHHHHHHHTTCGGGHHH-HHHHH
T ss_pred ---H-HHHHHHhCCCHHHHHHHHHHHccccchHHHH---HHHHHH----H---HHHHHHHHHHHhhccccccHH-HHHHH
Confidence 1 7899999999999999988765 23333331 111000 0 001111121 111 167777 89999
Q ss_pred HhhcCCCCCcccchhhHHHHHH-hcccCCCCCChHHHHHHHHHHHHHHHHhcccccCCCCCceecCC
Q 042728 421 RLCGLYSEGYVIQVSNLLRYGV-GWRLFENVYTSEEARSRVHRLIDNLKSSCLLLDGDAKDEVKMHD 486 (486)
Q Consensus 421 l~~s~fp~~~~i~~~~Li~~Wi-aeg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~mHD 486 (486)
..+|. +. +...|....- ..|. ..+. ..+..+++.|++.++|...+ ..|+++|
T Consensus 297 ~~la~---g~--~~~~l~~~~~~~~g~---~~~~----~~~~~~L~~L~~~gli~~~~--~~y~f~~ 349 (357)
T 2fna_A 297 RTLSK---CG--KWSDVKRALELEEGI---EISD----SEIYNYLTQLTKHSWIIKEG--EKYCPSE 349 (357)
T ss_dssp HHHTT---CB--CHHHHHHHHHHHHCS---CCCH----HHHHHHHHHHHHTTSEEESS--SCEEESS
T ss_pred HHHHc---CC--CHHHHHHHHHHhcCC---CCCH----HHHHHHHHHHHhCCCEEecC--CEEEecC
Confidence 99998 22 4454443210 1120 0111 23456788899999997654 3466553
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.59 E-value=2e-13 Score=135.13 Aligned_cols=287 Identities=13% Similarity=0.072 Sum_probs=177.7
Q ss_pred ccccccHHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhHcc----C--CCeEEEEEeCCCC-CHHH
Q 042728 157 FEAFDSRMKVFQDVMEALR----DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEEN----L--FDKVVMAEVTQTP-DHHK 225 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~--f~~~~wv~vs~~~-~~~~ 225 (486)
+..++||+.+++.|.+++. ....+.+.|+|++|+||||||+.+++...... . ...++|++++... +...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 3679999999999987774 34467899999999999999999998875431 1 3456788877777 8888
Q ss_pred HHHHHHHHh-CCCCC-CCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc---ccc-ccCCCCCcccccccCCCCCcEEE
Q 042728 226 IQNKLAFDL-GMEFG-LNENEFQRAERLHERLKKEKQLLIILDNIWTKLE---LDK-FGIPTGDVAEKDRKDDQRRCTII 299 (486)
Q Consensus 226 ~~~~i~~~l-~~~~~-~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~---~~~-l~~~~~~~~~~~~~~~~~~s~il 299 (486)
++..++..+ +.... ...+.......+.+.+.. ++.+|||||++.... .+. + ..+.. .. .+..+|
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l-~~l~~-------~~-~~~~iI 168 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVL-YQLLR-------SD-ANISVI 168 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHH-HHHHT-------SS-SCEEEE
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeH-HHHhc-------CC-cceEEE
Confidence 999998887 33222 123345667777777775 445999999976422 111 1 11111 12 578899
Q ss_pred EEeCchhhh----hhh-cCCcccEEcCCCChHHHHHHHHHHhCC-CCCCCchHHHHHHHHHHcC---CChH-HHHHHHHH
Q 042728 300 LTSRKQDLL----RID-MNSQKNFQIDALPPKEALQLFEEIVGD-STKISAFQSTANEIVERCG---GLPV-ALSTVANA 369 (486)
Q Consensus 300 vTtR~~~v~----~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~~~---GlPl-ai~~~~~~ 369 (486)
+||+..... ... ......+.+++++.++..++|...+.. .....-..+..+.+++.|+ |.|. ++..+-..
T Consensus 169 ~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a 248 (384)
T 2qby_B 169 MISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRA 248 (384)
T ss_dssp EECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred EEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999876321 101 111238999999999999999987531 1111112345677888888 9887 44444333
Q ss_pred hc------CCCHHHHHHHHHHHhcCchhhhccchhhhHHHHHHhHhcCCchhHhHHHHhhcCCCCCcccchhhHHHHHHh
Q 042728 370 LK------TKELDFWKDALNQLRRSDAREIHGMQANVYTSIKLSYDFLESEEAKSLFRLCGLYSEGYVIQVSNLLRYGVG 443 (486)
Q Consensus 370 L~------~~~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~l~~s~fp~~~~i~~~~Li~~Wia 443 (486)
.. .-+.+.+..++.++. ...+..++..|+++ .+..+..++....+..+. +......-.
T Consensus 249 ~~~a~~~~~i~~~~v~~~~~~~~--------------~~~~~~~~~~l~~~-~~~~l~al~~~~~~~~~~-~~~~~~~~~ 312 (384)
T 2qby_B 249 AQLASGGGIIRKEHVDKAIVDYE--------------QERLIEAVKALPFH-YKLALRSLIESEDVMSAH-KMYTDLCNK 312 (384)
T ss_dssp HHHTTSSSCCCHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHTCCBHHHHH-HHHHHHHHH
T ss_pred HHHhcCCCccCHHHHHHHHHHHh--------------cchHHHHHHcCCHH-HHHHHHHHHHhcccChHH-HHHHHHHHH
Confidence 21 235666666666432 13466778889987 677766666511101121 111111112
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHHHhccccc
Q 042728 444 WRLFENVYTSEEARSRVHRLIDNLKSSCLLLD 475 (486)
Q Consensus 444 eg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 475 (486)
.| . ...+ ...+..+++.|...|++..
T Consensus 313 ~g-~-~~~~----~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 313 FK-Q-KPLS----YRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp TT-C-CCCC----HHHHHHHHHHHHHTTSEEE
T ss_pred cC-C-CCCC----HHHHHHHHHHHHhCCCEEE
Confidence 22 1 1112 2346678899999999974
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.57 E-value=2.7e-13 Score=134.16 Aligned_cols=291 Identities=15% Similarity=0.115 Sum_probs=176.7
Q ss_pred ccccccHHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccC-CCeEEEEEeCCCCCHHHHHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALR----DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENL-FDKVVMAEVTQTPDHHKIQNKLA 231 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~vs~~~~~~~~~~~i~ 231 (486)
+..|+||+.+++.|.+++. ......+.|+|++|+|||||++.+++....... -..++|+++....+...++..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999886 345678999999999999999999988765411 23567888777777888888888
Q ss_pred HHhCCCCC-CCCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCccc------cccccCCCCCcccccccCCCCCcEEEEEeC
Q 042728 232 FDLGMEFG-LNENEFQRAERLHERLKK-EKQLLIILDNIWTKLE------LDKFGIPTGDVAEKDRKDDQRRCTIILTSR 303 (486)
Q Consensus 232 ~~l~~~~~-~~~~~~~~~~~l~~~L~~-~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 303 (486)
..++.... ...+..+....+.+.+.. +++.+||||+++.... +..+..... .....+..+|+||+
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~-------~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINS-------EVNKSKISFIGITN 171 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHH-------SCCC--EEEEEEES
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchh-------hcCCCeEEEEEEEC
Confidence 87765433 123456666777777764 3489999999975421 111110000 00233566788887
Q ss_pred chhhhhh----hcCC--cccEEcCCCChHHHHHHHHHHhCC-CCCCCchHHHHHHHHHHcC---CChHHHHHHHHHhc--
Q 042728 304 KQDLLRI----DMNS--QKNFQIDALPPKEALQLFEEIVGD-STKISAFQSTANEIVERCG---GLPVALSTVANALK-- 371 (486)
Q Consensus 304 ~~~v~~~----~~~~--~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~~~---GlPlai~~~~~~L~-- 371 (486)
....... .... ...+.+++++.++..+++...+.. .....-..+..+.+++.++ |.|..+..+.....
T Consensus 172 ~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 172 DVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp CGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 6643211 1111 147999999999999999986531 1111223456777888887 99984443332221
Q ss_pred -------CCCHHHHHHHHHHHhcCchhhhccchhhhHHHHHHhHhcCCchhHhHHHHhhcCCCC-C-cccchhhHHHHHH
Q 042728 372 -------TKELDFWKDALNQLRRSDAREIHGMQANVYTSIKLSYDFLESEEAKSLFRLCGLYSE-G-YVIQVSNLLRYGV 442 (486)
Q Consensus 372 -------~~~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~l~~s~fp~-~-~~i~~~~Li~~Wi 442 (486)
.-+.+.+..++..+. ...+.-.+..||++ .+..+..++.+-+ + ..+....+.+...
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~-~~~il~ai~~~~~~g~~~~~~~~l~~~~~ 316 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEIE--------------RDRVRDIILTLPFH-SKLVLMAVVSISSEENVVSTTGAVYETYL 316 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHH--------------HHHHHHHHHTSCHH-HHHHHHHHHHHC-----CEEHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHHh--------------hchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCceeHHHHHHHHH
Confidence 124445555544321 12456667888887 6666665553211 1 2344544433221
Q ss_pred --hc--ccCCCCCChHHHHHHHHHHHHHHHHhccccc
Q 042728 443 --GW--RLFENVYTSEEARSRVHRLIDNLKSSCLLLD 475 (486)
Q Consensus 443 --ae--g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 475 (486)
++ | +. ..+ ...+..+++.|...|++..
T Consensus 317 ~~~~~~g-~~-~~~----~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 317 NICKKLG-VE-AVT----QRRVSDIINELDMVGILTA 347 (386)
T ss_dssp HHHHHHT-CC-CCC----HHHHHHHHHHHHHHTSEEE
T ss_pred HHHHhcC-CC-CCC----HHHHHHHHHHHHhCCCEEE
Confidence 11 2 11 111 2345667888999999963
No 10
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.55 E-value=1.4e-14 Score=116.15 Aligned_cols=80 Identities=11% Similarity=0.193 Sum_probs=63.9
Q ss_pred HHhhhhhhHHhHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcC-CcchHhHHHHHHHHHHHHHHHhhhh
Q 042728 14 VSEGVKSLFKPIIRQISYVFKYQSYIDGLKDQVKQLEHKRERVEIPVHQATQQG-DEIYKDVADWLNSVKEFTQGAAKSI 92 (486)
Q Consensus 14 ~~~l~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~L~~~l~~i~~~l~~a~~~~-~~~~~~~~~Wl~~vr~~ayd~ed~l 92 (486)
++.+.++|.+.+.+|+.++ .+++++++.|+.+|..|+++|.+|+.+. +..+++++.|+++||+++||+||||
T Consensus 3 v~~ll~KL~~ll~~E~~l~-------~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~i 75 (115)
T 3qfl_A 3 ISNLIPKLGELLTEEFKLH-------KGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVV 75 (115)
T ss_dssp TCSHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------hchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666667777766 4567777777888888888999998763 3478999999999999999999999
Q ss_pred hhhHHHHh
Q 042728 93 TDDEDRAK 100 (486)
Q Consensus 93 D~~~~~~~ 100 (486)
|+|.++..
T Consensus 76 D~f~~~~~ 83 (115)
T 3qfl_A 76 DKFLVQVD 83 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998765
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.55 E-value=3.5e-13 Score=133.48 Aligned_cols=296 Identities=13% Similarity=0.073 Sum_probs=181.0
Q ss_pred ccccccHHHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHHHHhHc----cCCCeEEEEEeCCCCCHHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALRD----DKLNIIGVHGMGGVGKTTIVKQVAKQVMEE----NLFDKVVMAEVTQTPDHHKIQN 228 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~vs~~~~~~~~~~ 228 (486)
+..++||+.+++.|.+++.. ...+.+.|+|++|+||||||+.+++..... +.-..++|+++....+...++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 46799999999999998843 456789999999999999999999877442 1123567888888889999999
Q ss_pred HHHHHhCCCCCC-CCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCcccc----ccccCCCCCcccccccCC-CCCcEEEEE
Q 042728 229 KLAFDLGMEFGL-NENEFQRAERLHERLKK-EKQLLIILDNIWTKLEL----DKFGIPTGDVAEKDRKDD-QRRCTIILT 301 (486)
Q Consensus 229 ~i~~~l~~~~~~-~~~~~~~~~~l~~~L~~-~kr~LlVlDdv~~~~~~----~~l~~~~~~~~~~~~~~~-~~~s~ilvT 301 (486)
.++.+++...+. ..+..+....+.+.+.. +++.+||||+++....- +.+...+.. ..... ..+..+|+|
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~----~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRI----NQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHG----GGCC-----CEEEEE
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhc----hhhcCCCceEEEEEE
Confidence 999999765432 33456667777777753 46899999999865321 111100000 00001 446678888
Q ss_pred eCchhhh----hhhcCCc--ccEEcCCCChHHHHHHHHHHhCC-CCCCCchHHHHHHHHHHcC---CChHHH-HHHHHHh
Q 042728 302 SRKQDLL----RIDMNSQ--KNFQIDALPPKEALQLFEEIVGD-STKISAFQSTANEIVERCG---GLPVAL-STVANAL 370 (486)
Q Consensus 302 tR~~~v~----~~~~~~~--~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~~~---GlPlai-~~~~~~L 370 (486)
|+..... ....... ..+.+++++.++..+++...+.. .....-..+..+.+++.++ |.|..+ ..+....
T Consensus 174 t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 8765321 1111222 47899999999999999987531 0011111235677888888 999433 3332222
Q ss_pred c-----C---CCHHHHHHHHHHHhcCchhhhccchhhhHHHHHHhHhcCCchhHhHHHHhhc-CCCCCcccchhhHHHHH
Q 042728 371 K-----T---KELDFWKDALNQLRRSDAREIHGMQANVYTSIKLSYDFLESEEAKSLFRLCG-LYSEGYVIQVSNLLRYG 441 (486)
Q Consensus 371 ~-----~---~~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~l~~s-~fp~~~~i~~~~Li~~W 441 (486)
. + -+.+.+..++..+. ...+.-++..||++ .+..+..++ ++.....+....+.+..
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~ 318 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIE--------------RDRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERY 318 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHh--------------hchHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 1 1 24555655555331 12355678889987 666665555 44322346566454443
Q ss_pred Hh--cccCCCCCChHHHHHHHHHHHHHHHHhccccc
Q 042728 442 VG--WRLFENVYTSEEARSRVHRLIDNLKSSCLLLD 475 (486)
Q Consensus 442 ia--eg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 475 (486)
.. +..-.... ....+..+++.|...|++..
T Consensus 319 ~~~~~~~~~~~~----~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 319 KELTSTLGLEHV----TLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HHHHHHTTCCCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHhcCCCCC----CHHHHHHHHHHHHhCCCeEE
Confidence 21 11101111 12446678899999999974
No 12
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.50 E-value=4.9e-12 Score=125.30 Aligned_cols=293 Identities=11% Similarity=0.041 Sum_probs=183.2
Q ss_pred ccccccHHHHHHHHHHHhcc----CCcc--EEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALRD----DKLN--IIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~----~~~~--vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
++.++||+.+++.|.+++.. .... .+.|+|++|+|||||++.+++...... -..++|++++...+...++..+
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHH
Confidence 46799999999999988854 3334 899999999999999999998875431 1356788888888888999999
Q ss_pred HHHhCCCCCC-CCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEEEeCchh
Q 042728 231 AFDLGMEFGL-NENEFQRAERLHERLKK-EKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQD 306 (486)
Q Consensus 231 ~~~l~~~~~~-~~~~~~~~~~l~~~L~~-~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 306 (486)
+..++...+. ..+.......+...+.. +++.+||||+++... .+..+...+... ......+..||++|+...
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~----~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEA----DKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCH----HHHSSCCEEEEEEESSTH
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhC----CCCCcCCEEEEEEECCch
Confidence 9998765331 33556666666666653 457999999997652 222221111110 000014677888887764
Q ss_pred hhhhh----cC--CcccEEcCCCChHHHHHHHHHHhCC-CCCCCchHHHHHHHHHHc---------CCChHHHHHHHHHh
Q 042728 307 LLRID----MN--SQKNFQIDALPPKEALQLFEEIVGD-STKISAFQSTANEIVERC---------GGLPVALSTVANAL 370 (486)
Q Consensus 307 v~~~~----~~--~~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~~---------~GlPlai~~~~~~L 370 (486)
..... .. ....+.+++++.++..+++...+.. .....-..+..+.|++.+ +|.|..+..+....
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 32210 01 1236999999999999999887642 111122346778899999 78876555443322
Q ss_pred c------C---CCHHHHHHHHHHHhcCchhhhccchhhhHHHHHHhHhcCCchhHhHHHHhhcCCC---CCcccchhhHH
Q 042728 371 K------T---KELDFWKDALNQLRRSDAREIHGMQANVYTSIKLSYDFLESEEAKSLFRLCGLYS---EGYVIQVSNLL 438 (486)
Q Consensus 371 ~------~---~~~~~w~~~l~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~l~~s~fp---~~~~i~~~~Li 438 (486)
. + -+.+....+...... ..+.-.+..||.+ .+.++..++.+. .+..+....+.
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~~--------------~~~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~ 315 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVLF--------------GISEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAE 315 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHSC--------------CCCHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHhh--------------hhHHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHH
Confidence 1 1 133333333332211 1233456778887 787777777654 22246666666
Q ss_pred HHHHh----cccCCCCCChHHHHHHHHHHHHHHHHhccccc
Q 042728 439 RYGVG----WRLFENVYTSEEARSRVHRLIDNLKSSCLLLD 475 (486)
Q Consensus 439 ~~Wia----eg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 475 (486)
..+-. .|... -+ ...+..++++|...|++..
T Consensus 316 ~~~~~~~~~~~~~~--~~----~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 316 ESYKIVCEEYGERP--RV----HSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp HHHHHHHHHTTCCC--CC----HHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHHcCCCC--CC----HHHHHHHHHHHHhCCCeEE
Confidence 65432 12111 11 2346678999999999974
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.45 E-value=1.2e-12 Score=120.58 Aligned_cols=200 Identities=12% Similarity=0.152 Sum_probs=118.7
Q ss_pred ccCccccccHHHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042728 154 VKDFEAFDSRMKVFQDVMEALRDDK-LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAF 232 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (486)
+.....++||+..++.|..++..+. .+.+.|+|++|+||||||+.+++.......+.. ........ ...+..
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~ 91 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIEQ 91 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHHT
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHhc
Confidence 3445679999999999999987654 357899999999999999999987754321100 00000000 000000
Q ss_pred Hh-----CCCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCc--cccccccCCCCCcccccccCCCCCcEEEEE
Q 042728 233 DL-----GMEFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTK--LELDKFGIPTGDVAEKDRKDDQRRCTIILT 301 (486)
Q Consensus 233 ~l-----~~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilvT 301 (486)
.. ..... ..........+.+.+. .+++.+||+||++.. ..++.+...+.. ...++.+|+|
T Consensus 92 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~--------~~~~~~~i~~ 162 (250)
T 1njg_A 92 GRFVDLIEIDAA-SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE--------PPEHVKFLLA 162 (250)
T ss_dssp TCCSSEEEEETT-CGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHS--------CCTTEEEEEE
T ss_pred cCCcceEEecCc-ccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhc--------CCCceEEEEE
Confidence 00 00000 0011111222222221 246799999999764 233333222211 3457788888
Q ss_pred eCchhh-hhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHh
Q 042728 302 SRKQDL-LRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANAL 370 (486)
Q Consensus 302 tR~~~v-~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L 370 (486)
|+.... ..........+.+++++.++..+++...+..... .-..+..+.|++.|+|+|..+..+...+
T Consensus 163 t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 163 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 876542 1112233568999999999999999987753221 1224567889999999999988776554
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.43 E-value=3.7e-12 Score=115.64 Aligned_cols=191 Identities=13% Similarity=0.116 Sum_probs=121.2
Q ss_pred ccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 042728 154 VKDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFD 233 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 233 (486)
+.....++||+..++.|.+++.....+.+.|+|++|+|||++|+.+++.......-...+.++.+.......+...+...
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEF 92 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHH
Confidence 34456799999999999999987766569999999999999999999887543222234445544444433332222221
Q ss_pred hCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEEEeCchhhh-hh
Q 042728 234 LGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLL-RI 310 (486)
Q Consensus 234 l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~-~~ 310 (486)
..... ....++.+||+||++... ..+.+...+.. ...++.+|+||+..... ..
T Consensus 93 ~~~~~----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~--------~~~~~~~i~~~~~~~~~~~~ 148 (226)
T 2chg_A 93 ARTAP----------------IGGAPFKIIFLDEADALTADAQAALRRTMEM--------YSKSCRFILSCNYVSRIIEP 148 (226)
T ss_dssp HTSCC----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHH--------TTTTEEEEEEESCGGGSCHH
T ss_pred hcccC----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHh--------cCCCCeEEEEeCChhhcCHH
Confidence 11100 112467999999998652 22222211111 34567888888765421 11
Q ss_pred hcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHH
Q 042728 311 DMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANA 369 (486)
Q Consensus 311 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~ 369 (486)
.......+.+.+++.++..+++...+...... -..+..+.|++.++|+|..+..+...
T Consensus 149 l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 149 IQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhCceeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 22334589999999999999999877421111 22456788999999999865554443
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=3.5e-11 Score=115.97 Aligned_cols=193 Identities=11% Similarity=0.123 Sum_probs=119.4
Q ss_pred cccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAF 232 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (486)
.+.....++|++..++.|.+++..+..+.+.|+|++|+||||+|+.+++..........+++++.+.......+ +.++.
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~ 94 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIK 94 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHH
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHH
Confidence 34445679999999999999998776656999999999999999999988643211123445544443332222 22222
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEEEeCchhh-hh
Q 042728 233 DLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDL-LR 309 (486)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v-~~ 309 (486)
.+..... .+..+++.++|+||++... .++.+...+.. ...++.+|+||+...- ..
T Consensus 95 ~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~--------~~~~~~~il~~~~~~~l~~ 152 (323)
T 1sxj_B 95 HFAQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMEL--------YSNSTRFAFACNQSNKIIE 152 (323)
T ss_dssp HHHHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHH--------TTTTEEEEEEESCGGGSCH
T ss_pred HHHhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhc--------cCCCceEEEEeCChhhchh
Confidence 2110000 0102457999999998642 22222211111 3456778888866432 11
Q ss_pred hhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHH-HHHHHHH
Q 042728 310 IDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVA-LSTVANA 369 (486)
Q Consensus 310 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPla-i~~~~~~ 369 (486)
........+.+.+++.++..+++...+...... -..+....|++.|+|.|.. +..+...
T Consensus 153 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 153 PLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVK-YTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhceEEeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 123445689999999999999999876421111 1245678899999999954 4544433
No 16
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.12 E-value=2.6e-09 Score=102.92 Aligned_cols=186 Identities=15% Similarity=0.131 Sum_probs=111.0
Q ss_pred cCccccccHHHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHH
Q 042728 155 KDFEAFDSRMKVFQDVMEALRD-----DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNK 229 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 229 (486)
.....++|++..+..+...+.. .....+.|+|++|+|||++|+.+++.... ...+++.+......++..
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~~- 82 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLAA- 82 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHHH-
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHHH-
Confidence 3466899999999888887742 34466889999999999999999987631 234554443333222221
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHhc--CCcEEEEEeCCCCcc--ccccccCCCCCccccc----------ccCCCCC
Q 042728 230 LAFDLGMEFGLNENEFQRAERLHERLKK--EKQLLIILDNIWTKL--ELDKFGIPTGDVAEKD----------RKDDQRR 295 (486)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~l~~~L~~--~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~----------~~~~~~~ 295 (486)
.+.+ .++.+|+||+++... ....+...+....... ......+
T Consensus 83 ------------------------~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 83 ------------------------ILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ------------------------HHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ------------------------HHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 1111 245788999997652 1111110000000000 0001124
Q ss_pred cEEEEEeCchhhh-hhhcCC-cccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhc
Q 042728 296 CTIILTSRKQDLL-RIDMNS-QKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANALK 371 (486)
Q Consensus 296 s~ilvTtR~~~v~-~~~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~ 371 (486)
..+|.||...... ...... ...+.+.+++.++...++...+..... .-..+....+++.|+|+|..+..+...+.
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 5677766654321 111122 257999999999999999887753222 12246778899999999998877766553
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=2.4e-10 Score=110.27 Aligned_cols=192 Identities=11% Similarity=0.098 Sum_probs=117.7
Q ss_pred cccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAF 232 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (486)
.+.....++|++..++.|.+++..+..+.+.|+|++|+||||+|+.+++.......-...+.++.+.......+ ...+.
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 98 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI-REKVK 98 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT-HHHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH-HHHHH
Confidence 33446679999999999999998777667999999999999999999988643211112333433321111110 11110
Q ss_pred HhCCCCCCCCCHHHHHHHHHHH--HhcCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEEEeCchhh-
Q 042728 233 DLGMEFGLNENEFQRAERLHER--LKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDL- 307 (486)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~--L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v- 307 (486)
. .... +..+++.++|+|+++... ..+.+...+.. ...++++|+||.....
T Consensus 99 ~-----------------~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~--------~~~~~~~i~~~~~~~~l 153 (327)
T 1iqp_A 99 E-----------------FARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEM--------FSSNVRFILSCNYSSKI 153 (327)
T ss_dssp H-----------------HHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHH--------TTTTEEEEEEESCGGGS
T ss_pred H-----------------HHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHh--------cCCCCeEEEEeCCcccc
Confidence 0 0000 111457899999998652 23333221111 3456788888876532
Q ss_pred hhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHhc
Q 042728 308 LRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANALK 371 (486)
Q Consensus 308 ~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~ 371 (486)
..........+.+.+++.++...++...+..... .-..+....|++.++|.|..+..+...+.
T Consensus 154 ~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 154 IEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-ELTEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp CHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC-EECHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 1111223457999999999999999887653221 12245678899999999996655544443
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.08 E-value=1.8e-09 Score=103.66 Aligned_cols=190 Identities=12% Similarity=0.140 Sum_probs=117.3
Q ss_pred ccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 042728 154 VKDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFD 233 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 233 (486)
+.....++|++..++.|.+++..+..+.+.++|++|+|||++|+.+++.......-...+.++.+.......+
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~------- 85 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVV------- 85 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTS-------
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHH-------
Confidence 3445679999999999999998776656999999999999999999988632211112334444332111110
Q ss_pred hCCCCCCCCCHHHHHHHHHHH--HhcCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEEEeCchh-hh
Q 042728 234 LGMEFGLNENEFQRAERLHER--LKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQD-LL 308 (486)
Q Consensus 234 l~~~~~~~~~~~~~~~~l~~~--L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-v~ 308 (486)
......+... +..+++.++|+|+++... ..+.+...+.. ...++.+|+||.... +.
T Consensus 86 -----------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~--------~~~~~~~i~~~~~~~~l~ 146 (319)
T 2chq_A 86 -----------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM--------YSKSCRFILSCNYVSRII 146 (319)
T ss_dssp -----------SHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS--------SSSSEEEEEEESCGGGSC
T ss_pred -----------HHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh--------cCCCCeEEEEeCChhhcc
Confidence 0011111100 112457899999997652 23333222222 345677888876654 22
Q ss_pred hhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHHHh
Q 042728 309 RIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVANAL 370 (486)
Q Consensus 309 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L 370 (486)
.........+.+.+++.++..+++...+...... -..+....|++.++|.|..+......+
T Consensus 147 ~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l~~~ 207 (319)
T 2chq_A 147 EPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGA 207 (319)
T ss_dssp HHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC-BCHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred hHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2123344689999999999999998877533222 224567889999999998655544433
No 19
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.02 E-value=9.1e-09 Score=97.57 Aligned_cols=174 Identities=10% Similarity=0.129 Sum_probs=106.4
Q ss_pred ccccHHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccC---C--CeEEEEEeCCCCCHHHHHHH
Q 042728 159 AFDSRMKVFQDVMEALR----DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENL---F--DKVVMAEVTQTPDHHKIQNK 229 (486)
Q Consensus 159 ~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f--~~~~wv~vs~~~~~~~~~~~ 229 (486)
.+.||+++++.|...|. .+..+.+.|+|++|+|||++++.+++....... . -.+++++.....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 47899999999987773 457788999999999999999999999865321 1 13567777777888999999
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHH--hcCCcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeCchhh
Q 042728 230 LAFDLGMEFGLNENEFQRAERLHERL--KKEKQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDL 307 (486)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~l~~~L--~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 307 (486)
|.+++................+...+ ..+++++++||+++....-+-+ ..+- .. .........||.++.....
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L-~~l~---~~-~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKIL-QYFE---KW-ISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHH-HHHH---HH-HHCSSCCEEEEEECCSSCC
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHH-HHHH---hc-ccccCCcEEEEEEecCccc
Confidence 99999544221122223333333433 2356799999999875311111 1000 00 0001112233444433221
Q ss_pred hhhh-------cCCcccEEcCCCChHHHHHHHHHHhC
Q 042728 308 LRID-------MNSQKNFQIDALPPKEALQLFEEIVG 337 (486)
Q Consensus 308 ~~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~~~ 337 (486)
.... .-....+.++|++.+|-.+++.+++.
T Consensus 176 ~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 1101 11125799999999999999998774
No 20
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.00 E-value=3.5e-09 Score=104.02 Aligned_cols=198 Identities=12% Similarity=0.136 Sum_probs=113.0
Q ss_pred ccCccccccHHHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042728 154 VKDFEAFDSRMKVFQDVMEALRDDK-LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAF 232 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (486)
+.....++||+..++.|.+.+..+. .+.+.|+|++|+||||+|+.+++.......+.. ...........+..
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~~ 84 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIEQ 84 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHHT
T ss_pred CCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHhc
Confidence 3445679999999999999987654 356889999999999999999987743211100 00000000011110
Q ss_pred HhC-----CCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEEE
Q 042728 233 DLG-----MEFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIILT 301 (486)
Q Consensus 233 ~l~-----~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvT 301 (486)
... ......... +....+.+.+. .+++.++|+||++... ..+.+...+.. ...++.+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~--------~~~~~~~Il~ 155 (373)
T 1jr3_A 85 GRFVDLIEIDAASRTKV-EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE--------PPEHVKFLLA 155 (373)
T ss_dssp SCCSSCEEEETTCSCCS-SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS--------CCSSEEEEEE
T ss_pred cCCCceEEecccccCCH-HHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc--------CCCceEEEEE
Confidence 000 000000000 01122222222 2457899999997542 23323211111 3345667777
Q ss_pred eCchh-hhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHH
Q 042728 302 SRKQD-LLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVAN 368 (486)
Q Consensus 302 tR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~ 368 (486)
|.... +..........+++.+++.++..+++...+...... -..+....|++.++|.|..+..+..
T Consensus 156 ~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~-~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 156 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred eCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 76443 222123445789999999999999998776422111 1235678899999999998776543
No 21
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.90 E-value=3.5e-09 Score=93.32 Aligned_cols=162 Identities=12% Similarity=0.188 Sum_probs=89.9
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccC-----CCeEEEEEeCCCCCHHHHHHH
Q 042728 155 KDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENL-----FDKVVMAEVTQTPDHHKIQNK 229 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~wv~vs~~~~~~~~~~~ 229 (486)
.....++||+++++.+.+.+.....+.+.|+|++|+|||+||+.+++....... ...+++++++. +.
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-- 90 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV-- 90 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH--
T ss_pred ccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------Hh--
Confidence 345679999999999999998776778899999999999999999988754211 12344544321 10
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHH-hcCCcEEEEEeCCCCccccc--cccCCCCCcccccccCCCCCcEEEEEeCchh
Q 042728 230 LAFDLGMEFGLNENEFQRAERLHERL-KKEKQLLIILDNIWTKLELD--KFGIPTGDVAEKDRKDDQRRCTIILTSRKQD 306 (486)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~l~~~L-~~~kr~LlVlDdv~~~~~~~--~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 306 (486)
... ............+.+.+ ..+++.+|||||++....-. ........++.... ...+..+|+||....
T Consensus 91 -----~~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~--~~~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 91 -----AGA-KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGATTLDE 162 (195)
T ss_dssp -----TTT-CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH--HTTSCCEEEEECHHH
T ss_pred -----ccC-CccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh--ccCCeEEEEeCCHHH
Confidence 000 00001111222222222 23567899999997542100 00000000000000 223455777776654
Q ss_pred hh------hhhcCCcccEEcCCCChHHHHHHH
Q 042728 307 LL------RIDMNSQKNFQIDALPPKEALQLF 332 (486)
Q Consensus 307 v~------~~~~~~~~~~~l~~L~~~e~~~Lf 332 (486)
.. .........+.+.+++.++..+++
T Consensus 163 ~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 163 YRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 21 112233346889999988876654
No 22
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.78 E-value=1e-07 Score=95.29 Aligned_cols=185 Identities=14% Similarity=0.211 Sum_probs=112.2
Q ss_pred ccccccCccccccHHHHH---HHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC-CCHHH
Q 042728 150 EHIQVKDFEAFDSRMKVF---QDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT-PDHHK 225 (486)
Q Consensus 150 ~~~~~~~~~~~~gR~~~~---~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~ 225 (486)
....+.....++|.+..+ ..|...+..+..+.+.|+|++|+||||||+.+++..... ++.++.. .....
T Consensus 18 ~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~-------f~~l~a~~~~~~~ 90 (447)
T 3pvs_A 18 ARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD-------VERISAVTSGVKE 90 (447)
T ss_dssp HHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE-------EEEEETTTCCHHH
T ss_pred HHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC-------eEEEEeccCCHHH
Confidence 344455677899999988 788888888887889999999999999999999875321 2222222 12222
Q ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEE-Ee
Q 042728 226 IQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIIL-TS 302 (486)
Q Consensus 226 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilv-Tt 302 (486)
.+.++. ........+++.+|++|+++... ..+.+...+ ......+|. ||
T Consensus 91 -ir~~~~-----------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~l----------e~~~v~lI~att 142 (447)
T 3pvs_A 91 -IREAIE-----------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHI----------EDGTITFIGATT 142 (447)
T ss_dssp -HHHHHH-----------------HHHHHHHTTCCEEEEEETTTCC------CCHHHH----------HTTSCEEEEEES
T ss_pred -HHHHHH-----------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHH----------hcCceEEEecCC
Confidence 111111 11111122467999999998652 222221111 112334444 44
Q ss_pred Cchh--hhhhhcCCcccEEcCCCChHHHHHHHHHHhCCC------CCCCchHHHHHHHHHHcCCChHHHHHHHHH
Q 042728 303 RKQD--LLRIDMNSQKNFQIDALPPKEALQLFEEIVGDS------TKISAFQSTANEIVERCGGLPVALSTVANA 369 (486)
Q Consensus 303 R~~~--v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~------~~~~~~~~~~~~i~~~~~GlPlai~~~~~~ 369 (486)
.+.. +..........+.+.+++.++...++.+.+... ....-..+..+.|++.++|.+-.+..+...
T Consensus 143 ~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~ 217 (447)
T 3pvs_A 143 ENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEM 217 (447)
T ss_dssp SCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4442 212233455689999999999999998876531 111223457788889999988766554443
No 23
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=3.6e-08 Score=96.03 Aligned_cols=199 Identities=12% Similarity=0.119 Sum_probs=115.1
Q ss_pred cccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCC-CeEEEEEeCCCCCHHHHHHHHH
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLF-DKVVMAEVTQTPDHHKIQNKLA 231 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~i~ 231 (486)
.+.....++|++..++.|..++..+..+.+.|+|++|+||||+|+.+++.......+ ..+..++.+.......+ .+..
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 110 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKV 110 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHH
Confidence 344466789999999999999987755558999999999999999999886432111 12334444443333322 2222
Q ss_pred HHhC-CCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEEEeCchh-h
Q 042728 232 FDLG-MEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQD-L 307 (486)
Q Consensus 232 ~~l~-~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-v 307 (486)
..+. ......... .......+++-+|++|+++... ....+...+.. ....+++|++|.... +
T Consensus 111 ~~~~~~~~~~~~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~--------~~~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 111 KNFARLTVSKPSKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTMET--------YSGVTRFCLICNYVTRI 176 (353)
T ss_dssp HHHHHSCCCCCCTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHH--------TTTTEEEEEEESCGGGS
T ss_pred HHHhhhcccccchh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHh--------cCCCceEEEEeCchhhC
Confidence 2111 100000000 0011111345799999987542 12222111111 233566777765443 2
Q ss_pred hhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042728 308 LRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVA 367 (486)
Q Consensus 308 ~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 367 (486)
..........+.+.+++.++...++...+...... -..+..+.|++.++|.|..+..+.
T Consensus 177 ~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 177 IDPLASQCSKFRFKALDASNAIDRLRFISEQENVK-CDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp CHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred cchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11112223578999999999999998876432211 224578899999999998655443
No 24
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.77 E-value=4.7e-07 Score=84.04 Aligned_cols=185 Identities=14% Similarity=0.164 Sum_probs=101.1
Q ss_pred CccccccHHHHHHHHHHHh---cc---------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCH
Q 042728 156 DFEAFDSRMKVFQDVMEAL---RD---------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDH 223 (486)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~ 223 (486)
....++|.+..++.|.+.+ .. ...+.+.|+|++|+|||++|+.+++.... ..+.++.+.-.+.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~~~~~~~~~~ 78 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV-----PFLAMAGAEFVEV 78 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----CEEEEETTTTSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEechHHHHhh
Confidence 4567889888877776554 21 23456889999999999999999987632 2344444332110
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc-----------------cccccCCCCCccc
Q 042728 224 HKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE-----------------LDKFGIPTGDVAE 286 (486)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~-----------------~~~l~~~~~~~~~ 286 (486)
. ..........+........+.+|+||+++.... +..+...+.
T Consensus 79 --------------~--~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~---- 138 (262)
T 2qz4_A 79 --------------I--GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMD---- 138 (262)
T ss_dssp --------------S--TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHH----
T ss_pred --------------c--cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhh----
Confidence 0 001112222333333334679999999986410 011100000
Q ss_pred ccccCCCCCcEEEEEeCchhhhhh-hc---CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChH-
Q 042728 287 KDRKDDQRRCTIILTSRKQDLLRI-DM---NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPV- 361 (486)
Q Consensus 287 ~~~~~~~~~s~ilvTtR~~~v~~~-~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl- 361 (486)
......+..||.||........ .. .-...+.++..+.++-.+++...+...............+++.+.|.+-
T Consensus 139 --~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~ 216 (262)
T 2qz4_A 139 --GMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGA 216 (262)
T ss_dssp --TCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHH
T ss_pred --CcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHH
Confidence 0002345667777765542111 11 1235688999999999999988775332222222234678888888654
Q ss_pred HHHHHH
Q 042728 362 ALSTVA 367 (486)
Q Consensus 362 ai~~~~ 367 (486)
.|..+.
T Consensus 217 ~l~~l~ 222 (262)
T 2qz4_A 217 DIANIC 222 (262)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 25
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.76 E-value=5.5e-08 Score=91.72 Aligned_cols=184 Identities=16% Similarity=0.165 Sum_probs=106.3
Q ss_pred ccCccccccHHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC
Q 042728 154 VKDFEAFDSRMKVFQDVMEALRD-------------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT 220 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 220 (486)
......++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.... ..+.++.+.-
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-----~~~~v~~~~~ 87 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA-----TFIRVVGSEL 87 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-----EEEEEEGGGG
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehHHH
Confidence 34467799999999998887732 34567899999999999999999877532 2233333221
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc----------------ccccccCCCCCc
Q 042728 221 PDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL----------------ELDKFGIPTGDV 284 (486)
Q Consensus 221 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~~ 284 (486)
... ...........+.......++.+|+||+++... .+..+...+.
T Consensus 88 ~~~----------------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~-- 149 (285)
T 3h4m_A 88 VKK----------------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMD-- 149 (285)
T ss_dssp CCC----------------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHH--
T ss_pred HHh----------------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhh--
Confidence 110 011112223333344433567899999996531 0111100000
Q ss_pred ccccccCCCCCcEEEEEeCchhhhhh-hc---CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCC-C
Q 042728 285 AEKDRKDDQRRCTIILTSRKQDLLRI-DM---NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGG-L 359 (486)
Q Consensus 285 ~~~~~~~~~~~s~ilvTtR~~~v~~~-~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~G-l 359 (486)
......+..||.||........ .. .-...+.+++.+.++-.++|...+........ .....++..+.| .
T Consensus 150 ----~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~l~~~~~g~~ 223 (285)
T 3h4m_A 150 ----GFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED--VNLEEIAKMTEGCV 223 (285)
T ss_dssp ----TTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHHCTTCC
T ss_pred ----CCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc--CCHHHHHHHcCCCC
Confidence 0013346677888875533211 11 12246899999999999999988764322111 124567777877 4
Q ss_pred hHHHHHH
Q 042728 360 PVALSTV 366 (486)
Q Consensus 360 Plai~~~ 366 (486)
|-.|..+
T Consensus 224 ~~~i~~l 230 (285)
T 3h4m_A 224 GAELKAI 230 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5455444
No 26
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.72 E-value=2.6e-08 Score=91.25 Aligned_cols=178 Identities=13% Similarity=0.103 Sum_probs=105.5
Q ss_pred CccccccH---HHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042728 156 DFEAFDSR---MKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAF 232 (486)
Q Consensus 156 ~~~~~~gR---~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (486)
..+.|+|+ +..++.+..++..+..+.+.|+|++|+||||||+.+++..... ...+.|++.+..... +.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~- 96 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------ST- 96 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CG-
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HH-
Confidence 45567763 3667777777766566789999999999999999999887654 345667765432110 00
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc----cccccCCCCCcccccccCCCCCcEEEEEeCchhhh
Q 042728 233 DLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE----LDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLL 308 (486)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~----~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 308 (486)
...+.+ .++.+||+||++.... .+.+...+.. .. .....++|+||+...-.
T Consensus 97 -----------------~~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~----~~--~~~~~~ii~~~~~~~~~ 151 (242)
T 3bos_A 97 -----------------ALLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNR----VA--EQKRGSLIVSASASPME 151 (242)
T ss_dssp -----------------GGGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHH----HH--HHCSCEEEEEESSCTTT
T ss_pred -----------------HHHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHH----HH--HcCCCeEEEEcCCCHHH
Confidence 000111 2457999999975421 1112111000 00 11122477777644310
Q ss_pred -----hhhc---CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHH
Q 042728 309 -----RIDM---NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVAN 368 (486)
Q Consensus 309 -----~~~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~ 368 (486)
.... .....+.+++++.++..+++...+..... .-..+....|++.++|.+-.+..+..
T Consensus 152 ~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 152 AGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp TTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 0011 11267999999999999999987642211 12245678899999998876655433
No 27
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.70 E-value=3.3e-07 Score=85.77 Aligned_cols=196 Identities=16% Similarity=0.197 Sum_probs=102.6
Q ss_pred ccccHHHHHHHHHH-------Hhc---cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHH
Q 042728 159 AFDSRMKVFQDVME-------ALR---DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQN 228 (486)
Q Consensus 159 ~~~gR~~~~~~l~~-------~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 228 (486)
.++|....++.+.. .+. ....+.+.|+|++|+|||+||+.+++... .. .+.++.+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~----~~-~~~i~~~~~~------- 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN----FP-FIKICSPDKM------- 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT----CS-EEEEECGGGC-------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC----CC-EEEEeCHHHh-------
Confidence 45666555444444 332 34557789999999999999999998742 22 2223322110
Q ss_pred HHHHHhCCCCCCCCCHH---HHHHHHHHHHhcCCcEEEEEeCCCCccc------------cccccCCCCCcccccccCCC
Q 042728 229 KLAFDLGMEFGLNENEF---QRAERLHERLKKEKQLLIILDNIWTKLE------------LDKFGIPTGDVAEKDRKDDQ 293 (486)
Q Consensus 229 ~i~~~l~~~~~~~~~~~---~~~~~l~~~L~~~kr~LlVlDdv~~~~~------------~~~l~~~~~~~~~~~~~~~~ 293 (486)
. ..... .....+.......++.+|+||+++.... ++.+...+.. ....+
T Consensus 102 -----~------g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~-----~~~~~ 165 (272)
T 1d2n_A 102 -----I------GFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKK-----APPQG 165 (272)
T ss_dssp -----T------TCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTC-----CCSTT
T ss_pred -----c------CCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcC-----ccCCC
Confidence 0 01111 1122222222224678999999864310 1111110000 00022
Q ss_pred CCcEEEEEeCchhhhhh--hcCC-cccEEcCCCCh-HHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCC------ChHHH
Q 042728 294 RRCTIILTSRKQDLLRI--DMNS-QKNFQIDALPP-KEALQLFEEIVGDSTKISAFQSTANEIVERCGG------LPVAL 363 (486)
Q Consensus 294 ~~s~ilvTtR~~~v~~~--~~~~-~~~~~l~~L~~-~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~G------lPlai 363 (486)
....||.||........ ..+. ...+.+++++. ++...++.... .. ..+....|++.+.| ++-++
T Consensus 166 ~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~~---~~~~~~~l~~~~~g~~~~g~ir~l~ 239 (272)
T 1d2n_A 166 RKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---NF---KDKERTTIAQQVKGKKVWIGIKKLL 239 (272)
T ss_dssp CEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---CS---CHHHHHHHHHHHTTSEEEECHHHHH
T ss_pred CCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---CC---CHHHHHHHHHHhcCCCccccHHHHH
Confidence 34456777776644321 1122 35689999998 66666666532 11 23457788888888 34444
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhcC
Q 042728 364 STVANALKTKELDFWKDALNQLRRS 388 (486)
Q Consensus 364 ~~~~~~L~~~~~~~w~~~l~~l~~~ 388 (486)
..+-..........+..+++.+...
T Consensus 240 ~~l~~a~~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 240 MLIEMSLQMDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHHHHHTTSCGGGHHHHHHHHHHHT
T ss_pred HHHHHHhhhchHHHHHHHHHHHHHc
Confidence 4444333334455666666655443
No 28
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.70 E-value=7.3e-08 Score=93.91 Aligned_cols=201 Identities=9% Similarity=0.077 Sum_probs=111.1
Q ss_pred cccCccccccHHHHHHHHHHHh-ccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccC----CC-----------------
Q 042728 153 QVKDFEAFDSRMKVFQDVMEAL-RDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENL----FD----------------- 210 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~----------------- 210 (486)
.+.....++|++..++.|.+++ ..+..+.+.|+|++|+||||+++.++........ ++
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred CCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 3444667999999999999988 6665555999999999999999999986422110 00
Q ss_pred ---eEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc--cccccCCCCCc
Q 042728 211 ---KVVMAEVTQTP-DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE--LDKFGIPTGDV 284 (486)
Q Consensus 211 ---~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~--~~~l~~~~~~~ 284 (486)
..+.+..+... ......++++..+....... ... .+.. +. .++-++|+|++...+. .+.+...+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~-~ls~-l~-~~~~vlilDE~~~L~~~~~~~L~~~le~- 160 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD----FQD-SKDG-LA-HRYKCVIINEANSLTKDAQAALRRTMEK- 160 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHH-
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhcccc----ccc-cccc-cC-CCCeEEEEeCccccCHHHHHHHHHHHHh-
Confidence 01111111100 00011223333322111100 000 0000 12 2567999999987521 1222111111
Q ss_pred ccccccCCCCCcEEEEEeCchh-hhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHcCCChHH
Q 042728 285 AEKDRKDDQRRCTIILTSRKQD-LLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAF-QSTANEIVERCGGLPVA 362 (486)
Q Consensus 285 ~~~~~~~~~~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~-~~~~~~i~~~~~GlPla 362 (486)
...++.+|++|.... +..........+++.+++.++..+++...+...... -. .+....|++.++|.+-.
T Consensus 161 -------~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~G~~r~ 232 (354)
T 1sxj_E 161 -------YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ-LETKDILKRIAQASNGNLRV 232 (354)
T ss_dssp -------STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE-ECCSHHHHHHHHHHTTCHHH
T ss_pred -------hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHcCCCHHH
Confidence 233577777776543 322223445789999999999999998876422111 11 24678899999999876
Q ss_pred HHHHHHH
Q 042728 363 LSTVANA 369 (486)
Q Consensus 363 i~~~~~~ 369 (486)
+..+...
T Consensus 233 a~~~l~~ 239 (354)
T 1sxj_E 233 SLLMLES 239 (354)
T ss_dssp HHHHHTH
T ss_pred HHHHHHH
Confidence 6555433
No 29
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.62 E-value=6.3e-07 Score=87.69 Aligned_cols=198 Identities=11% Similarity=0.117 Sum_probs=104.8
Q ss_pred ccccccHHHHHHH---HHHHhccCCc--cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEe----CCCCCHHHHH
Q 042728 157 FEAFDSRMKVFQD---VMEALRDDKL--NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEV----TQTPDHHKIQ 227 (486)
Q Consensus 157 ~~~~~gR~~~~~~---l~~~L~~~~~--~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v----s~~~~~~~~~ 227 (486)
.+.|+|++...+. +.+.+..+.. +.+.|+|++|+|||++|+.+++.......| +.++. +........+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHH
Confidence 5679999988665 4555555443 589999999999999999999887532122 22221 2223444444
Q ss_pred HHHHHHh-CC--------------------CC--------C-CCCCHHHHHHHHHHH----HhcCC----cEEEEEeCCC
Q 042728 228 NKLAFDL-GM--------------------EF--------G-LNENEFQRAERLHER----LKKEK----QLLIILDNIW 269 (486)
Q Consensus 228 ~~i~~~l-~~--------------------~~--------~-~~~~~~~~~~~l~~~----L~~~k----r~LlVlDdv~ 269 (486)
....... +. .. . ...........+... ...++ +.+|++|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 4443331 00 00 0 000011122222221 11233 3599999998
Q ss_pred Ccc--ccccccCCCCCcccccccCCCCCcEEEEEeCc-------------hhhhhhhcCCcccEEcCCCChHHHHHHHHH
Q 042728 270 TKL--ELDKFGIPTGDVAEKDRKDDQRRCTIILTSRK-------------QDLLRIDMNSQKNFQIDALPPKEALQLFEE 334 (486)
Q Consensus 270 ~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~-------------~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~ 334 (486)
... ..+.+...+.. .... .++++|.. ..+..........+.+++++.++..+++..
T Consensus 200 ~l~~~~~~~L~~~le~--------~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~ 270 (368)
T 3uk6_A 200 MLDIESFSFLNRALES--------DMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRI 270 (368)
T ss_dssp GSBHHHHHHHHHHTTC--------TTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHH
T ss_pred ccChHHHHHHHHHhhC--------cCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHH
Confidence 652 12222111111 1112 23333321 111111223345589999999999999998
Q ss_pred HhCCCCCCCchHHHHHHHHHHcC-CChHHHHHHH
Q 042728 335 IVGDSTKISAFQSTANEIVERCG-GLPVALSTVA 367 (486)
Q Consensus 335 ~~~~~~~~~~~~~~~~~i~~~~~-GlPlai~~~~ 367 (486)
.+..... .-..+....|++.+. |.|-.+..+.
T Consensus 271 ~~~~~~~-~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 271 RCEEEDV-EMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp HHHHTTC-CBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHcCC-CCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 7753221 223456788899987 7776555443
No 30
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.62 E-value=4.6e-07 Score=87.74 Aligned_cols=182 Identities=13% Similarity=0.159 Sum_probs=108.3
Q ss_pred cccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAF 232 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (486)
.+.....++|.+..++.|...+..+..+.+.++|++|+||||+|+.+++.......-..+..++.+.......+.
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir----- 94 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVR----- 94 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHH-----
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHH-----
Confidence 344456788999999999999987766558999999999999999999886432100122333333322222211
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHh-----cCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEEEeCch
Q 042728 233 DLGMEFGLNENEFQRAERLHERLK-----KEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQ 305 (486)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~L~-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~ 305 (486)
..+..... .+.+-++|+|+++... ..+.+...+.. ....+.+|++|...
T Consensus 95 ----------------~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~--------~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 95 ----------------NQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIER--------YTKNTRFCVLANYA 150 (340)
T ss_dssp ----------------THHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHH--------TTTTEEEEEEESCG
T ss_pred ----------------HHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhc--------CCCCeEEEEEecCc
Confidence 11111111 1236789999987542 12222111111 23356666666543
Q ss_pred h-hhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHH
Q 042728 306 D-LLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALS 364 (486)
Q Consensus 306 ~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 364 (486)
. +.....+....+.+.+++.++..+.+...+...... -..+..+.|++.++|.+--+.
T Consensus 151 ~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~-i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 151 HKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLK-LSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCC-BCHHHHHHHHHHHTTCHHHHH
T ss_pred cccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 2 222123344578999999999999888776322111 123567889999999887543
No 31
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.62 E-value=2.7e-07 Score=88.67 Aligned_cols=180 Identities=12% Similarity=0.066 Sum_probs=105.5
Q ss_pred ccccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 152 IQVKDFEAFDSRMKVFQDVMEALRDDKL-NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 152 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
..+...+.++|++..++.|.+++..+.. +++.+.|++|+|||++|+.+++... ..++.++.+.. ... .++..
T Consensus 20 ~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~~-~~~-~i~~~ 92 (324)
T 3u61_B 20 YRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSDC-KID-FVRGP 92 (324)
T ss_dssp SCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTTC-CHH-HHHTH
T ss_pred hCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEccccc-CHH-HHHHH
Confidence 3445567899999999999999976654 5677788899999999999987762 23455554432 222 22221
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCCcc---ccccccCCCCCcccccccCCCCCcEEEEEeC
Q 042728 231 AFDLGMEFGLNENEFQRAERLHERLK----KEKQLLIILDNIWTKL---ELDKFGIPTGDVAEKDRKDDQRRCTIILTSR 303 (486)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~---~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 303 (486)
+. +... .+++.+|++|+++... ..+.+...+.. ...++++|+||.
T Consensus 93 ~~--------------------~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~--------~~~~~~iI~~~n 144 (324)
T 3u61_B 93 LT--------------------NFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEA--------YSSNCSIIITAN 144 (324)
T ss_dssp HH--------------------HHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHH--------HGGGCEEEEEES
T ss_pred HH--------------------HHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHh--------CCCCcEEEEEeC
Confidence 11 1111 1367899999998764 22222111111 223567888776
Q ss_pred chhh-hhhhcCCcccEEcCCCChHHHHHHHH-------HHhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 304 KQDL-LRIDMNSQKNFQIDALPPKEALQLFE-------EIVGDSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 304 ~~~v-~~~~~~~~~~~~l~~L~~~e~~~Lf~-------~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
...- ..........+.+++++.++-.+++. ..+......-...+....|++.++|.+..+...
T Consensus 145 ~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~ 215 (324)
T 3u61_B 145 NIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGE 215 (324)
T ss_dssp SGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHH
T ss_pred CccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHH
Confidence 6542 11111223579999999888544332 222211111111256778999998877654433
No 32
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.60 E-value=2.8e-06 Score=81.39 Aligned_cols=189 Identities=14% Similarity=0.138 Sum_probs=107.8
Q ss_pred ccCccccccHHHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC
Q 042728 154 VKDFEAFDSRMKVFQDVMEALR------------DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP 221 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 221 (486)
......+.|.+..++.|.+.+. ....+-+.|+|++|+|||+||+.+++.... ...+.++.+.-.
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~~l~ 83 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDLV 83 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECCSSC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhHHHH
Confidence 3456678899888888877662 123467899999999999999999987521 122334433221
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc-------------cccccCCCCCccccc
Q 042728 222 DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE-------------LDKFGIPTGDVAEKD 288 (486)
Q Consensus 222 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~ 288 (486)
+ ... ... ......+.......++.+|+||+++.... ...+...+..
T Consensus 84 ~--------------~~~-g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~----- 142 (322)
T 1xwi_A 84 S--------------KWL-GES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG----- 142 (322)
T ss_dssp C--------------SSC-CSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHC-----
T ss_pred h--------------hhh-hHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhc-----
Confidence 1 000 112 22333344444435789999999985411 0000000000
Q ss_pred ccCCCCCcEEEEEeCchhhhh-hh-cCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCC-hHHHHH
Q 042728 289 RKDDQRRCTIILTSRKQDLLR-ID-MNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGL-PVALST 365 (486)
Q Consensus 289 ~~~~~~~s~ilvTtR~~~v~~-~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl-Plai~~ 365 (486)
......+..||.||....... .. ..-...+.++..+.++-.+++...+....... .......|++.+.|. +-.|..
T Consensus 143 ~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~ 221 (322)
T 1xwi_A 143 VGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISI 221 (322)
T ss_dssp SSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHH
T ss_pred ccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHH
Confidence 000234556666665543211 01 12335788999999999999998876432211 234677899999887 444555
Q ss_pred HHH
Q 042728 366 VAN 368 (486)
Q Consensus 366 ~~~ 368 (486)
+.+
T Consensus 222 l~~ 224 (322)
T 1xwi_A 222 IVR 224 (322)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.60 E-value=1e-06 Score=85.86 Aligned_cols=188 Identities=13% Similarity=0.121 Sum_probs=106.7
Q ss_pred cCccccccHHHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCC
Q 042728 155 KDFEAFDSRMKVFQDVMEALR------------DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPD 222 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~ 222 (486)
.....++|.+..++.|.+.+. ....+.+.|+|++|+|||+||+.+++.... ..+.++.+.-..
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~ 155 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTS 155 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCC
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhc
Confidence 345678999999999888763 134567899999999999999999876521 234455432211
Q ss_pred HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc-------------cccccCCCCCcccccc
Q 042728 223 HHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE-------------LDKFGIPTGDVAEKDR 289 (486)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~~ 289 (486)
. . ..........+.......++.+|+||+++.... ...+...+.. ..
T Consensus 156 ~--------------~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~----~~ 215 (357)
T 3d8b_A 156 K--------------W--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDG----AT 215 (357)
T ss_dssp S--------------S--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC------
T ss_pred c--------------c--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhc----cc
Confidence 0 0 011122223333333334679999999953310 1111100000 00
Q ss_pred cCCCCCcEEEEEeCchh-hhhhhc-CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCC-ChHHHHHH
Q 042728 290 KDDQRRCTIILTSRKQD-LLRIDM-NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGG-LPVALSTV 366 (486)
Q Consensus 290 ~~~~~~s~ilvTtR~~~-v~~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~G-lPlai~~~ 366 (486)
.....+..||.||.... +..... .....+.+...+.++..+++...+...... -..+....|++.+.| .|-.|..+
T Consensus 216 ~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 216 TSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp --CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred ccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHH
Confidence 00233556666775543 211111 223467899999999999998876432211 123567789999988 55556655
Q ss_pred HH
Q 042728 367 AN 368 (486)
Q Consensus 367 ~~ 368 (486)
..
T Consensus 295 ~~ 296 (357)
T 3d8b_A 295 CR 296 (357)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 34
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.60 E-value=1.1e-07 Score=97.55 Aligned_cols=193 Identities=11% Similarity=0.097 Sum_probs=109.7
Q ss_pred cccCccccccHHHHHHHHHHHhcc-----------------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEE
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALRD-----------------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMA 215 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~-----------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 215 (486)
.+.....++|++..++.|.+++.. +..+.+.|+|++|+||||+|+.+++... + .++.+
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~i 108 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQ 108 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEE
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEE
Confidence 344567799999999999999864 1346899999999999999999998762 2 24455
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH-HhcCCcEEEEEeCCCCccc-----cccccCCCCCcccccc
Q 042728 216 EVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHER-LKKEKQLLIILDNIWTKLE-----LDKFGIPTGDVAEKDR 289 (486)
Q Consensus 216 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-L~~~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~~~~ 289 (486)
+.+...... +....+........... ........ ....++.+|++|+++.... +..+...+
T Consensus 109 n~s~~~~~~-~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l-------- 175 (516)
T 1sxj_A 109 NASDVRSKT-LLNAGVKNALDNMSVVG----YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFC-------- 175 (516)
T ss_dssp CTTSCCCHH-HHHHTGGGGTTBCCSTT----TTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHH--------
T ss_pred eCCCcchHH-HHHHHHHHHhccccHHH----HHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHH--------
Confidence 555544433 22222222111100000 00000000 1124678999999975421 11111111
Q ss_pred cCCCCCcEEEEEeCchh--hhhhhcCCcccEEcCCCChHHHHHHHHHHhCCC--CCCCchHHHHHHHHHHcCCCh-HHHH
Q 042728 290 KDDQRRCTIILTSRKQD--LLRIDMNSQKNFQIDALPPKEALQLFEEIVGDS--TKISAFQSTANEIVERCGGLP-VALS 364 (486)
Q Consensus 290 ~~~~~~s~ilvTtR~~~--v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~~~GlP-lai~ 364 (486)
...+..||+++.... ...........+.+++++.++..+++...+... ..++ +....|++.++|.+ -++.
T Consensus 176 --~~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~ 250 (516)
T 1sxj_A 176 --RKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVIN 250 (516)
T ss_dssp --HHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHH
T ss_pred --HhcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHH
Confidence 112334555554432 111122344579999999999999988776421 1222 35678999999954 4555
Q ss_pred HHHH
Q 042728 365 TVAN 368 (486)
Q Consensus 365 ~~~~ 368 (486)
.+..
T Consensus 251 ~L~~ 254 (516)
T 1sxj_A 251 LLST 254 (516)
T ss_dssp HHTH
T ss_pred HHHH
Confidence 5533
No 35
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.57 E-value=1.1e-06 Score=84.38 Aligned_cols=189 Identities=13% Similarity=0.105 Sum_probs=109.6
Q ss_pred cccCccccccHHHHHHHHHHHhc----------c--CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALR----------D--DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT 220 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~----------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 220 (486)
|......++|.+..++.|.+.+. . ...+-+.|+|++|+|||+||+.+++.... ..+.++.+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~v~~~-- 85 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS-----TFFSVSSS-- 85 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC-----EEEEEEHH--
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC-----CEEEEchH--
Confidence 44456789999999999988772 1 12456899999999999999999987532 22333321
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc-------------cccccCCCCCcccc
Q 042728 221 PDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE-------------LDKFGIPTGDVAEK 287 (486)
Q Consensus 221 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~ 287 (486)
++.. . . ..........+.......++.+|+||+++.... ...+...+..
T Consensus 86 ----~l~~----~---~---~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~---- 147 (322)
T 3eie_A 86 ----DLVS----K---W---MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNG---- 147 (322)
T ss_dssp ----HHHT----T---T---GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGG----
T ss_pred ----HHhh----c---c---cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcc----
Confidence 1110 0 0 111233334444444445678999999975411 1111000000
Q ss_pred cccCCCCCcEEEEEeCchhhhhhh--cCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCC-ChHHHH
Q 042728 288 DRKDDQRRCTIILTSRKQDLLRID--MNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGG-LPVALS 364 (486)
Q Consensus 288 ~~~~~~~~s~ilvTtR~~~v~~~~--~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~G-lPlai~ 364 (486)
......+..||.||......... ..-...+.++..+.++-.++|...+....... .......|++.+.| .+-.|.
T Consensus 148 -~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~l~~la~~t~g~sg~di~ 225 (322)
T 3eie_A 148 -VGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL-TKEDYRTLGAMTEGYSGSDIA 225 (322)
T ss_dssp -GGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC-CHHHHHHHHHTTTTCCHHHHH
T ss_pred -ccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHcCCCCHHHHH
Confidence 00133456677677654321101 12235678899999999999999886433221 23456788889887 454555
Q ss_pred HHHH
Q 042728 365 TVAN 368 (486)
Q Consensus 365 ~~~~ 368 (486)
.+..
T Consensus 226 ~l~~ 229 (322)
T 3eie_A 226 VVVK 229 (322)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 36
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.57 E-value=5.3e-07 Score=87.15 Aligned_cols=184 Identities=14% Similarity=0.161 Sum_probs=105.6
Q ss_pred ccCccccccHHHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHH
Q 042728 154 VKDFEAFDSRMKVFQDVMEALRD-----DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQN 228 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 228 (486)
+.....++|++..++.+..++.. .....+.|+|++|+|||+||+.+++.... ..+.++.+.......
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~-----~~~~~~~~~~~~~~~--- 96 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSA-----NIKTTAAPMIEKSGD--- 96 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTC-----CEEEEEGGGCCSHHH---
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEecchhccchhH---
Confidence 34567899999999998888853 34456899999999999999999776422 123333322221111
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEEEeCCCCcc--ccccccCCCCCccc----------ccccCCCCC
Q 042728 229 KLAFDLGMEFGLNENEFQRAERLHERLK-KEKQLLIILDNIWTKL--ELDKFGIPTGDVAE----------KDRKDDQRR 295 (486)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~-~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~----------~~~~~~~~~ 295 (486)
+...+. ..+..+|+||+++... ....+...+..... .......++
T Consensus 97 ----------------------~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 97 ----------------------LAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp ----------------------HHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred ----------------------HHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 111111 1345789999987541 11111000000000 000001123
Q ss_pred cEEEEEeCchhhh-hhhcCC-cccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHHH
Q 042728 296 CTIILTSRKQDLL-RIDMNS-QKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVAN 368 (486)
Q Consensus 296 s~ilvTtR~~~v~-~~~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~ 368 (486)
..+|.+|...... ...... ...+.+++++.++...++...+.... ..-..+..+.|++.+.|+|-.+..+..
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 5666666654321 111222 36799999999999999988765322 122345678899999999965554433
No 37
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.57 E-value=3.4e-06 Score=79.79 Aligned_cols=186 Identities=12% Similarity=0.110 Sum_probs=105.1
Q ss_pred ccCccccccHHHHHHHHHHHhcc------------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC
Q 042728 154 VKDFEAFDSRMKVFQDVMEALRD------------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP 221 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 221 (486)
+.....++|.+..++.|.+.+.. ...+.+.|+|++|+||||+|+.+++.... ..+.++.+.-.
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l~ 91 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASLT 91 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTTS
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHHh
Confidence 34456799999999998887632 23567899999999999999999876521 23344443221
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccccc-------------ccc---CCCCCcc
Q 042728 222 DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLELD-------------KFG---IPTGDVA 285 (486)
Q Consensus 222 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~-------------~l~---~~~~~~~ 285 (486)
.. ...........+.......++.+|+||+++....-. .+. ...+.
T Consensus 92 ~~----------------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-- 153 (297)
T 3b9p_A 92 SK----------------YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPG-- 153 (297)
T ss_dssp SS----------------SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred hc----------------ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccc--
Confidence 10 011223333333333333467899999997541100 000 00000
Q ss_pred cccccCCCCCcEEEEEeCchhhhh-hhc-CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChH-H
Q 042728 286 EKDRKDDQRRCTIILTSRKQDLLR-IDM-NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPV-A 362 (486)
Q Consensus 286 ~~~~~~~~~~s~ilvTtR~~~v~~-~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-a 362 (486)
...+.+..||.||....... ... .....+.++..+.++-..++...+...... -..+....|++.+.|.+- .
T Consensus 154 ----~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~~la~~~~g~~~~~ 228 (297)
T 3b9p_A 154 ----NPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP-LDTEALRRLAKITDGYSGSD 228 (297)
T ss_dssp ---------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC-SCHHHHHHHHHHTTTCCHHH
T ss_pred ----cCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHH
Confidence 00123456777776643211 011 122567788888888888888776532211 123456788889988775 4
Q ss_pred HHHHH
Q 042728 363 LSTVA 367 (486)
Q Consensus 363 i~~~~ 367 (486)
+..+.
T Consensus 229 l~~l~ 233 (297)
T 3b9p_A 229 LTALA 233 (297)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 38
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.55 E-value=1.4e-06 Score=83.90 Aligned_cols=170 Identities=10% Similarity=0.098 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhHcc--------------------CCCeEEEEEeC---C
Q 042728 164 MKVFQDVMEALRDDK-LNIIGVHGMGGVGKTTIVKQVAKQVMEEN--------------------LFDKVVMAEVT---Q 219 (486)
Q Consensus 164 ~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~vs---~ 219 (486)
++..+.|...+..++ .+.+.++|++|+|||++|+.+++...... |++ ..++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCC
Confidence 556777888877665 45689999999999999999998764321 122 2233221 1
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcE
Q 042728 220 TPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCT 297 (486)
Q Consensus 220 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ 297 (486)
...... .+++.+.+...+. .+++-++|+|+++... ..+.+...+.. ...++.
T Consensus 87 ~~~i~~-ir~l~~~~~~~~~-----------------~~~~kvviIdead~l~~~a~naLLk~lEe--------p~~~~~ 140 (334)
T 1a5t_A 87 TLGVDA-VREVTEKLNEHAR-----------------LGGAKVVWVTDAALLTDAAANALLKTLEE--------PPAETW 140 (334)
T ss_dssp SBCHHH-HHHHHHHTTSCCT-----------------TSSCEEEEESCGGGBCHHHHHHHHHHHTS--------CCTTEE
T ss_pred CCCHHH-HHHHHHHHhhccc-----------------cCCcEEEEECchhhcCHHHHHHHHHHhcC--------CCCCeE
Confidence 112211 2223332221110 1356899999998652 22222222221 334566
Q ss_pred EEEEeCchh-hhhhhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 298 IILTSRKQD-LLRIDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 298 ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
+|++|.+.. +.....+....+++.+++.++..+++..... -..+....+++.++|.|..+..+
T Consensus 141 ~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~------~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 141 FFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT------MSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC------CCHHHHHHHHHHTTTCHHHHHHT
T ss_pred EEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 776666543 3332345567899999999999999988751 11345678999999999766544
No 39
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.55 E-value=9.1e-07 Score=88.54 Aligned_cols=202 Identities=13% Similarity=0.122 Sum_probs=115.3
Q ss_pred ccccc-cH--HHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042728 157 FEAFD-SR--MKVFQDVMEALRDDK-LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAF 232 (486)
Q Consensus 157 ~~~~~-gR--~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (486)
.+.|+ |. ......+......+. ...+.|+|++|+||||||+.+++.......-..+++++.+ .+...+..
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~ 177 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVD 177 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHH
Confidence 45566 53 333444555444433 5678999999999999999999887654212245566543 23344444
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc----cccccCCCCCcccccccCCCCCcEEEEEeCchhhh
Q 042728 233 DLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE----LDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLL 308 (486)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~----~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 308 (486)
.+... . ...+...+. .++-+|++||++.... .+.+...+.. ....|..||+||....-.
T Consensus 178 ~~~~~-----~----~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~-------l~~~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 178 SMKEG-----K----LNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNE-------LHDSGKQIVICSDREPQK 240 (440)
T ss_dssp HHHTT-----C----HHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHH-------HHTTTCEEEEEESSCGGG
T ss_pred HHHcc-----c----HHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHH-------HHHCCCeEEEEECCCHHH
Confidence 43211 1 122333333 1467999999975431 1112111100 023467788888764221
Q ss_pred -----h---hhcCCcccEEcCCCChHHHHHHHHHHhCC--CCCCCchHHHHHHHHHHcCCChHHHHHHHHHhc------C
Q 042728 309 -----R---IDMNSQKNFQIDALPPKEALQLFEEIVGD--STKISAFQSTANEIVERCGGLPVALSTVANALK------T 372 (486)
Q Consensus 309 -----~---~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~------~ 372 (486)
. ..+.....+.+++++.++-.+++.+.+.. ...++ +....|++.++|.+-.+.-+...+. +
T Consensus 241 l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~ 317 (440)
T 2z4s_A 241 LSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTG 317 (440)
T ss_dssp CSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 1 01222357899999999999999887742 11122 3567889999999876554433221 2
Q ss_pred --CCHHHHHHHHHH
Q 042728 373 --KELDFWKDALNQ 384 (486)
Q Consensus 373 --~~~~~w~~~l~~ 384 (486)
-+.+.++.++..
T Consensus 318 ~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 318 KEVDLKEAILLLKD 331 (440)
T ss_dssp SCCCHHHHHHHTST
T ss_pred CCCCHHHHHHHHHH
Confidence 255566666554
No 40
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.53 E-value=3.4e-06 Score=83.11 Aligned_cols=188 Identities=14% Similarity=0.131 Sum_probs=104.6
Q ss_pred ccCccccccHHHHHHHHHHHhcc------------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC
Q 042728 154 VKDFEAFDSRMKVFQDVMEALRD------------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP 221 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 221 (486)
+.....++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++... ...+.++.+.-.
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~-----~~~~~v~~~~l~ 185 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN-----ATFFNISAASLT 185 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT-----CEEEEECSCCC-
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc-----CcEEEeeHHHhh
Confidence 34467899999999999887721 2346789999999999999999987642 123444433322
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc-------------cccccCCCCCccccc
Q 042728 222 DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE-------------LDKFGIPTGDVAEKD 288 (486)
Q Consensus 222 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~ 288 (486)
.. .. ... ......+.......++.+|+||+++.... ...+...+. ..
T Consensus 186 ~~--~~-------------g~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~----~~ 245 (389)
T 3vfd_A 186 SK--YV-------------GEG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFD----GV 245 (389)
T ss_dssp ---------------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHH----HH
T ss_pred cc--cc-------------chH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhh----cc
Confidence 11 00 011 12223333333334568999999975410 001100000 00
Q ss_pred ccCCCCCcEEEEEeCchhhh-hhhcCCc-ccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChH-HHHH
Q 042728 289 RKDDQRRCTIILTSRKQDLL-RIDMNSQ-KNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPV-ALST 365 (486)
Q Consensus 289 ~~~~~~~s~ilvTtR~~~v~-~~~~~~~-~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~ 365 (486)
.........||.||...... ....... ..+.+...+.++-.+++...+...... -..+....|++.+.|..- +|..
T Consensus 246 ~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~~~~la~~~~g~~~~~l~~ 324 (389)
T 3vfd_A 246 QSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP-LTQKELAQLARMTDGYSGSDLTA 324 (389)
T ss_dssp C-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC-SCHHHHHHHHHHTTTCCHHHHHH
T ss_pred cccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHH
Confidence 00012345566677553321 1112222 468899999999999999887643222 223466788888988544 5544
Q ss_pred HH
Q 042728 366 VA 367 (486)
Q Consensus 366 ~~ 367 (486)
+.
T Consensus 325 L~ 326 (389)
T 3vfd_A 325 LA 326 (389)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 41
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.53 E-value=1.7e-07 Score=89.46 Aligned_cols=152 Identities=10% Similarity=0.112 Sum_probs=87.2
Q ss_pred ccccHHHHHHHHHHHhc---------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCC--eEEEEEeCCCC
Q 042728 159 AFDSRMKVFQDVMEALR---------------DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFD--KVVMAEVTQTP 221 (486)
Q Consensus 159 ~~~gR~~~~~~l~~~L~---------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~vs~~~ 221 (486)
.++|.+..++.|.+.+. ......+.|+|++|+|||++|+.+++......... ..+.++.+.-
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l- 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL- 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT-
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh-
Confidence 57898888888776653 23445789999999999999999998876543322 2333332111
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc-----------cccccccCCCCCccccccc
Q 042728 222 DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTK-----------LELDKFGIPTGDVAEKDRK 290 (486)
Q Consensus 222 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~~~~ 290 (486)
.... ..........+.... +..+|+||+++.. .....+...+ .
T Consensus 111 -------------~~~~--~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l--------~ 164 (309)
T 3syl_A 111 -------------VGQY--IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVM--------E 164 (309)
T ss_dssp -------------CCSS--TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHH--------H
T ss_pred -------------hhhc--ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHH--------h
Confidence 0000 111112222222222 3459999999743 1112221111 1
Q ss_pred CCCCCcEEEEEeCchhhhh------hhc-CCcccEEcCCCChHHHHHHHHHHhC
Q 042728 291 DDQRRCTIILTSRKQDLLR------IDM-NSQKNFQIDALPPKEALQLFEEIVG 337 (486)
Q Consensus 291 ~~~~~s~ilvTtR~~~v~~------~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~ 337 (486)
....+..||+||....... ... .....+.+++++.++-..++...+.
T Consensus 165 ~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 165 NNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp HCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 1344667888886543210 001 1126799999999999999988764
No 42
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.48 E-value=1.2e-06 Score=88.51 Aligned_cols=150 Identities=17% Similarity=0.213 Sum_probs=86.3
Q ss_pred ccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCC----C-eEEEEEeCCCCCHHHHHHHHH
Q 042728 157 FEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLF----D-KVVMAEVTQTPDHHKIQNKLA 231 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~-~~~wv~vs~~~~~~~~~~~i~ 231 (486)
.++++||+.++..+...+......-+.|+|++|+|||++|+.+++........ + .++.++.+
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------- 245 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------- 245 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------
Confidence 56799999999999999977666678899999999999999999887432111 1 12222222
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeCchhh----
Q 042728 232 FDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDL---- 307 (486)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v---- 307 (486)
..... ........+...+...++.+|++| ...+..+.+...+ .....++|.+|.....
T Consensus 246 ~~~~g------~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L----------~~g~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 246 TKYRG------EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSL----------ARGELQCIGATTLDEYRKYI 307 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCT----------TSSSCEEEEECCTTTTHHHH
T ss_pred ccccc------hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhh----------cCCCEEEEecCCHHHHHHHh
Confidence 00000 000112233333333467899999 2222222222222 2224566666655431
Q ss_pred --hhhhcCCcccEEcCCCChHHHHHHHHHHhC
Q 042728 308 --LRIDMNSQKNFQIDALPPKEALQLFEEIVG 337 (486)
Q Consensus 308 --~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 337 (486)
..........+.+++.+.++...++.....
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 111122345799999999999999997664
No 43
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.44 E-value=7.1e-06 Score=82.19 Aligned_cols=189 Identities=15% Similarity=0.158 Sum_probs=105.6
Q ss_pred ccCccccccHHHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC
Q 042728 154 VKDFEAFDSRMKVFQDVMEALR------------DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP 221 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 221 (486)
......++|.+...+.|.+.+. ....+.+.|+|++|+|||+||+.+++... ..-++.++...
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~------~~~~~~v~~~~ 203 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN------NSTFFSISSSD 203 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC------SSEEEEECCC-
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC------CCCEEEEeHHH
Confidence 3445678999999988888762 12346789999999999999999998751 11233333221
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc-------------cccccCCCCCccccc
Q 042728 222 DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE-------------LDKFGIPTGDVAEKD 288 (486)
Q Consensus 222 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~ 288 (486)
+.... .+.. ... ...+.......++.+|+||+++.... ...+...+..
T Consensus 204 ----l~~~~---~g~~---~~~----~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~----- 264 (444)
T 2zan_A 204 ----LVSKW---LGES---EKL----VKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG----- 264 (444)
T ss_dssp ---------------C---CCT----HHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTC-----
T ss_pred ----HHhhh---cchH---HHH----HHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhC-----
Confidence 11110 1110 111 22233333334679999999986410 1111111110
Q ss_pred ccCCCCCcEEEEEeCchhhhh-hhcC-CcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCC-hHHHHH
Q 042728 289 RKDDQRRCTIILTSRKQDLLR-IDMN-SQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGL-PVALST 365 (486)
Q Consensus 289 ~~~~~~~s~ilvTtR~~~v~~-~~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl-Plai~~ 365 (486)
......+..||.||....... .... ....+.++..+.++-..+|...+....... .......|++.+.|. +-.|..
T Consensus 265 ~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~ 343 (444)
T 2zan_A 265 VGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL-TEADFQELGRKTDGYSGADISI 343 (444)
T ss_dssp SSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC-CHHHHHHHHHHTTTCCHHHHHH
T ss_pred cccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHH
Confidence 000234566777776543211 1122 234688888889999999988876432111 234567889999884 445555
Q ss_pred HHH
Q 042728 366 VAN 368 (486)
Q Consensus 366 ~~~ 368 (486)
+..
T Consensus 344 l~~ 346 (444)
T 2zan_A 344 IVR 346 (444)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 44
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.42 E-value=3.7e-06 Score=81.71 Aligned_cols=187 Identities=14% Similarity=0.106 Sum_probs=105.2
Q ss_pred cCccccccHHHHHHHHHHHhcc------------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCC
Q 042728 155 KDFEAFDSRMKVFQDVMEALRD------------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPD 222 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~ 222 (486)
.....++|.+..++.|.+.+.. ...+-+.|+|++|+|||+||+.+++.... ..+.++.+
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-----~~~~v~~~---- 118 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS-----TFFSVSSS---- 118 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC-----EEEEEEHH----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----CEEEeeHH----
Confidence 3456789999988888877621 12345889999999999999999988732 22333322
Q ss_pred HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc-------------cccccCCCCCcccccc
Q 042728 223 HHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE-------------LDKFGIPTGDVAEKDR 289 (486)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~~ 289 (486)
++.. .. . ... ......+.......++.+|+||+++.... ...+...+.. .
T Consensus 119 --~l~~-------~~-~-g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~-----~ 181 (355)
T 2qp9_X 119 --DLVS-------KW-M-GES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNG-----V 181 (355)
T ss_dssp --HHHS-------CC-----C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHH-----C
T ss_pred --HHhh-------hh-c-chH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhc-----c
Confidence 1111 00 0 111 22233333333334679999999975421 1111000000 0
Q ss_pred cCCCCCcEEEEEeCchhhh-hhh-cCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCC-ChHHHHHH
Q 042728 290 KDDQRRCTIILTSRKQDLL-RID-MNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGG-LPVALSTV 366 (486)
Q Consensus 290 ~~~~~~s~ilvTtR~~~v~-~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~G-lPlai~~~ 366 (486)
.....+..||.||...... ... ......+.++..+.++-.+++...+....... -......|++.+.| .|-.|..+
T Consensus 182 ~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~-~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 182 GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL-TKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp C---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC-CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHcCCCCHHHHHHH
Confidence 0023456666677654321 101 12335688999999999999998876432211 13456788999988 45455554
Q ss_pred HH
Q 042728 367 AN 368 (486)
Q Consensus 367 ~~ 368 (486)
..
T Consensus 261 ~~ 262 (355)
T 2qp9_X 261 VK 262 (355)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 45
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=6.3e-06 Score=80.13 Aligned_cols=185 Identities=10% Similarity=0.139 Sum_probs=104.1
Q ss_pred cccCccccccHHHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALR----D---------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ 219 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 219 (486)
|....+.+.|-++.+++|.+.+. . ..++-+.++|++|+|||.||+.+++..... .+.++.+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~ 217 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAE 217 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGG
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHH
Confidence 44456677888888888776652 1 234668899999999999999999887532 33444332
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccccc---------cccCCCCCccccc-c
Q 042728 220 TPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLELD---------KFGIPTGDVAEKD-R 289 (486)
Q Consensus 220 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~---------~l~~~~~~~~~~~-~ 289 (486)
-.+. . ....+.....+........+++|++|+++....-. .....+..++..+ .
T Consensus 218 l~sk--------------~--vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 281 (405)
T 4b4t_J 218 LVQK--------------Y--IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG 281 (405)
T ss_dssp GSCS--------------S--TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHT
T ss_pred hhcc--------------c--cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhc
Confidence 2110 0 11112233344444444578999999998541000 0000000000000 0
Q ss_pred cCCCCCcEEEEEeCchhhhhhh----cCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCh
Q 042728 290 KDDQRRCTIILTSRKQDLLRID----MNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLP 360 (486)
Q Consensus 290 ~~~~~~s~ilvTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 360 (486)
.....+..||.||......... ..-...+.++.-+.++-.++|+.++......++. ....|++.|.|.-
T Consensus 282 ~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv--dl~~lA~~t~G~S 354 (405)
T 4b4t_J 282 FETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI--NLRKVAEKMNGCS 354 (405)
T ss_dssp TTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC--CHHHHHHHCCSCC
T ss_pred cCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHCCCCC
Confidence 1134455677777665432111 1234678999989999999998877643222211 1356778887753
No 46
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.41 E-value=4.3e-07 Score=79.32 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=44.6
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 155 KDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
.....++||+.+++.+.+.+.....+.+.|+|++|+|||+||+.+++....
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345679999999999999998776778899999999999999999988744
No 47
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.40 E-value=2.9e-06 Score=81.39 Aligned_cols=178 Identities=16% Similarity=0.133 Sum_probs=99.7
Q ss_pred ccccc-c--HHHHHHHHHHHhccC--CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042728 157 FEAFD-S--RMKVFQDVMEALRDD--KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLA 231 (486)
Q Consensus 157 ~~~~~-g--R~~~~~~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (486)
.+.|+ | .......+...+..+ ....+.|+|++|+||||||+.+++..... -..+++++.+ .+...+.
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~------~~~~~~~ 81 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSAD------DFAQAMV 81 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHH------HHHHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHH------HHHHHHH
Confidence 44555 4 333444555555443 34678999999999999999999887553 2234555432 3333333
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc---c-ccccCCCCCcccccccCCCCCcEEEEEeCchhh
Q 042728 232 FDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE---L-DKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDL 307 (486)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~---~-~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 307 (486)
..+.. .. ...+...+. ++.+|++||++.... + +.+...+.. ....+..||+||.....
T Consensus 82 ~~~~~-----~~----~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~-------~~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 82 EHLKK-----GT----INEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNT-------LYLLEKQIILASDRHPQ 143 (324)
T ss_dssp HHHHH-----TC----HHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHH-------HHHTTCEEEEEESSCGG
T ss_pred HHHHc-----Cc----HHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHH-------HHHCCCeEEEEecCChH
Confidence 33211 01 122233333 357999999976431 1 111111100 02235678888764422
Q ss_pred -----hh---hhcCCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHH
Q 042728 308 -----LR---IDMNSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVAL 363 (486)
Q Consensus 308 -----~~---~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 363 (486)
.. ........+.+++ +.++...++...+..... .-..+....|++.+ |.+-.+
T Consensus 144 ~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~-~l~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 144 KLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL-ELRKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp GCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHC-SSHHHH
T ss_pred HHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhC-CCHHHH
Confidence 11 0122235689999 999999999887752221 12245678888888 776543
No 48
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.38 E-value=2.9e-06 Score=92.28 Aligned_cols=166 Identities=14% Similarity=0.205 Sum_probs=90.5
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccC-----CCeEEEEEeCCCCCHHHHHHH
Q 042728 155 KDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENL-----FDKVVMAEVTQTPDHHKIQNK 229 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~wv~vs~~~~~~~~~~~ 229 (486)
...++++||+.++..+.+.+.....+.+.|+|++|+|||++|+.+++....... -..+++++++.-..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------- 239 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------- 239 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------
Confidence 345679999999999999997766666889999999999999999988754211 11344444322110
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHhc-CCcEEEEEeCCCCcccccccc--CCCCCcccccccCCCCCcEEEEEeCchh
Q 042728 230 LAFDLGMEFGLNENEFQRAERLHERLKK-EKQLLIILDNIWTKLELDKFG--IPTGDVAEKDRKDDQRRCTIILTSRKQD 306 (486)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~l~~~L~~-~kr~LlVlDdv~~~~~~~~l~--~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 306 (486)
+. ............+...+.. +++.+|++|+++....-..-. .....++.... ...+..+|.+|....
T Consensus 240 -----g~--~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l--~~~~i~~I~at~~~~ 310 (854)
T 1qvr_A 240 -----GA--KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL--ARGELRLIGATTLDE 310 (854)
T ss_dssp -------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH--HTTCCCEEEEECHHH
T ss_pred -----cC--ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH--hCCCeEEEEecCchH
Confidence 00 0011233334444444443 367999999998652100000 00000000001 223445666555443
Q ss_pred h-----hhhhcCCcccEEcCCCChHHHHHHHHHHh
Q 042728 307 L-----LRIDMNSQKNFQIDALPPKEALQLFEEIV 336 (486)
Q Consensus 307 v-----~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 336 (486)
. ..........+.+++++.++..+++....
T Consensus 311 ~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 311 YREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 2 11122334569999999999999987543
No 49
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.35 E-value=1.4e-05 Score=75.66 Aligned_cols=181 Identities=11% Similarity=0.162 Sum_probs=101.3
Q ss_pred cccCccccccHHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALRD-------------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ 219 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 219 (486)
|......++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.... ..+.++
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-----~~i~v~--- 81 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIK--- 81 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----EEEEEC---
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-----CEEEEE---
Confidence 334456789998888888776632 34567899999999999999999987531 222332
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc----------------cccccCCCCC
Q 042728 220 TPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE----------------LDKFGIPTGD 283 (486)
Q Consensus 220 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~----------------~~~l~~~~~~ 283 (486)
..++.... .+.. . . ....+........+.+|+||+++.... ...+...+.
T Consensus 82 ---~~~l~~~~---~g~~---~---~-~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~- 147 (301)
T 3cf0_A 82 ---GPELLTMW---FGES---E---A-NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD- 147 (301)
T ss_dssp ---HHHHHHHH---HTTC---T---T-HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHH-
T ss_pred ---hHHHHhhh---cCch---H---H-HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhh-
Confidence 22332222 1211 1 1 122233333234679999999974310 011100000
Q ss_pred cccccccCCCCCcEEEEEeCchhhhhh-hcC---CcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCC
Q 042728 284 VAEKDRKDDQRRCTIILTSRKQDLLRI-DMN---SQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGL 359 (486)
Q Consensus 284 ~~~~~~~~~~~~s~ilvTtR~~~v~~~-~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl 359 (486)
......+..||.||........ ... -...+.++..+.++-.+++...+......... ....++..+.|.
T Consensus 148 -----~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~--~~~~la~~~~g~ 220 (301)
T 3cf0_A 148 -----GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGF 220 (301)
T ss_dssp -----SSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHTCSSC
T ss_pred -----cccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc--hHHHHHHHcCCC
Confidence 0012345677777766532211 111 23578999999999999998877542211111 123566677777
Q ss_pred hHH
Q 042728 360 PVA 362 (486)
Q Consensus 360 Pla 362 (486)
|-+
T Consensus 221 sg~ 223 (301)
T 3cf0_A 221 SGA 223 (301)
T ss_dssp CHH
T ss_pred CHH
Confidence 654
No 50
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1e-05 Score=79.81 Aligned_cols=183 Identities=14% Similarity=0.190 Sum_probs=100.9
Q ss_pred cCccccccHHHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC
Q 042728 155 KDFEAFDSRMKVFQDVMEALR----D---------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP 221 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 221 (486)
.....+.|-++.+++|.+.+. . ..++-|.++|++|+|||+||+.+++..... .+.++.+.-.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~ 252 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIV 252 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTC
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhc
Confidence 345667888888877776652 1 245678999999999999999999887532 3344443322
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccccccccC---------CCCCccccc-ccC
Q 042728 222 DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLELDKFGI---------PTGDVAEKD-RKD 291 (486)
Q Consensus 222 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l~~---------~~~~~~~~~-~~~ 291 (486)
+. . ..........+........+++|++|+++....-..-.. .+..++..+ ...
T Consensus 253 sk--------------~--~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 253 DK--------------Y--IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp CS--------------S--SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred cc--------------c--chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 10 0 111122333344444445789999999985410000000 000000000 011
Q ss_pred CCCCcEEEEEeCchhhhhhh-cC---CcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCh
Q 042728 292 DQRRCTIILTSRKQDLLRID-MN---SQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLP 360 (486)
Q Consensus 292 ~~~~s~ilvTtR~~~v~~~~-~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 360 (486)
...+..||.||......... .. -...|.++.-+.++-.++|+.++.......+. ....|++.+.|.-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~--dl~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF--DFEAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC--CHHHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhCCCCC
Confidence 34456778787665432211 11 23468888888888888888777542222211 1356777887753
No 51
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.2e-05 Score=79.21 Aligned_cols=181 Identities=12% Similarity=0.110 Sum_probs=100.6
Q ss_pred CccccccHHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCC
Q 042728 156 DFEAFDSRMKVFQDVMEALR-------------DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPD 222 (486)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~ 222 (486)
....+.|-++.+++|.+.+. -..++-|.++|++|+|||+||+.+++..... .+.++.+.-.+
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~s 281 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELVQ 281 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhhc
Confidence 34567888888888876542 1346778999999999999999999887532 33444332111
Q ss_pred HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccccc---------cccCCCCCccccc-ccCC
Q 042728 223 HHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLELD---------KFGIPTGDVAEKD-RKDD 292 (486)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~---------~l~~~~~~~~~~~-~~~~ 292 (486)
. . ....+.....+........+++|++|+++....-. .....+..++..+ ....
T Consensus 282 k--------------~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 282 K--------------Y--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp C--------------S--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred c--------------c--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 0 0 01112233334444444578999999997541100 0000000000000 0113
Q ss_pred CCCcEEEEEeCchhhhhhh-c---CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCC
Q 042728 293 QRRCTIILTSRKQDLLRID-M---NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGL 359 (486)
Q Consensus 293 ~~~s~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl 359 (486)
..+..||.||......... . .-...|.++.-+.++-.++|+.++.......+. ....|++.|.|.
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv--dl~~LA~~T~Gf 414 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI--RWELISRLCPNS 414 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHHCCSC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHCCCC
Confidence 3455667777555432111 1 234578888888899899998887643222211 135677788775
No 52
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=5.1e-06 Score=81.98 Aligned_cols=178 Identities=12% Similarity=0.121 Sum_probs=99.5
Q ss_pred cccCccccccHHHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALR----D---------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ 219 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 219 (486)
|......+.|-++.+++|.+.+. . ..++-|.++|++|+|||.||+.+++..... .+.++.+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~ 250 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQ 250 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhh
Confidence 33446678898888888877642 1 245678999999999999999999887432 33444332
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc------------c----cccccCCCCC
Q 042728 220 TPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL------------E----LDKFGIPTGD 283 (486)
Q Consensus 220 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~------------~----~~~l~~~~~~ 283 (486)
-.+. . ..........+........+++|++|+++... . ...+...+.
T Consensus 251 l~~~--------------~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ld- 313 (434)
T 4b4t_M 251 LVQM--------------Y--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLD- 313 (434)
T ss_dssp GCSS--------------C--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHT-
T ss_pred hhhc--------------c--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhh-
Confidence 1110 0 01112233333333333468999999986320 0 001100000
Q ss_pred cccccccCCCCCcEEEEEeCchhhhhhhc----CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCC
Q 042728 284 VAEKDRKDDQRRCTIILTSRKQDLLRIDM----NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGL 359 (486)
Q Consensus 284 ~~~~~~~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl 359 (486)
......+..||.||.......... .-...+.++.-+.++-.++|+.++......++. ....|++.|.|.
T Consensus 314 -----g~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv--dl~~lA~~t~G~ 386 (434)
T 4b4t_M 314 -----GFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI--NWQELARSTDEF 386 (434)
T ss_dssp -----TSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC--CHHHHHHHCSSC
T ss_pred -----ccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCC
Confidence 001334556777776654322111 123468888888888888888766432211111 135677788774
No 53
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=2.1e-05 Score=76.73 Aligned_cols=184 Identities=11% Similarity=0.126 Sum_probs=100.6
Q ss_pred cccCccccccHHHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC
Q 042728 153 QVKDFEAFDSRMKVFQDVMEALR----D---------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ 219 (486)
Q Consensus 153 ~~~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 219 (486)
|.....++.|-++.+++|.+.+. . ..++-|.++|++|+|||.||+.+++..... .+.++.+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~ 251 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSE 251 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGG
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHH
Confidence 33445667788888887776552 1 235679999999999999999999987532 23333322
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccccccccCC---------CCCcccc-cc
Q 042728 220 TPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLELDKFGIP---------TGDVAEK-DR 289 (486)
Q Consensus 220 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l~~~---------~~~~~~~-~~ 289 (486)
-.+. . ....+.....+........+++|++|+++....-..-... +..++.. ..
T Consensus 252 l~sk--------------~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 252 LIQK--------------Y--LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp GCCS--------------S--SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred hhhc--------------c--CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 1110 0 1112233344444444457899999998754110000000 0000000 00
Q ss_pred cCCCCCcEEEEEeCchhhhhhhc-C---CcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCC
Q 042728 290 KDDQRRCTIILTSRKQDLLRIDM-N---SQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGL 359 (486)
Q Consensus 290 ~~~~~~s~ilvTtR~~~v~~~~~-~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl 359 (486)
.....+..||.||.......... . -...|.++.-+.++-.++|+.++......++. ....|++.+.|.
T Consensus 316 ~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv--dl~~LA~~T~Gf 387 (437)
T 4b4t_I 316 FDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV--NLETLVTTKDDL 387 (437)
T ss_dssp CCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC--CHHHHHHHCCSC
T ss_pred cCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCC
Confidence 11334556777776655422122 1 22457888888888888998877643222211 134577777774
No 54
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.22 E-value=2.2e-05 Score=84.34 Aligned_cols=157 Identities=16% Similarity=0.228 Sum_probs=96.1
Q ss_pred CccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccC----CCeEEEE-EeCCCCCHHHHHHHH
Q 042728 156 DFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENL----FDKVVMA-EVTQTPDHHKIQNKL 230 (486)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv-~vs~~~~~~~~~~~i 230 (486)
..++++||+.++..+.+.|.......+.|+|++|+|||++|+.+++....... ....+|. +.+.-
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------- 253 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------- 253 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------
Confidence 35678999999999999998776777899999999999999999988754321 1233321 11111
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--------c---cccccCCCCCcccccccCCCCCcEEE
Q 042728 231 AFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--------E---LDKFGIPTGDVAEKDRKDDQRRCTII 299 (486)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--------~---~~~l~~~~~~~~~~~~~~~~~~s~il 299 (486)
+.. .............+.+.+...++.+|++|+++... . .+.+...+ ...+..+|
T Consensus 254 ---~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l----------~~~~~~~I 319 (758)
T 1r6b_X 254 ---LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL----------SSGKIRVI 319 (758)
T ss_dssp ----CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS----------SSCCCEEE
T ss_pred ---hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH----------hCCCeEEE
Confidence 000 01122344445555555554457999999998551 1 11121111 23455677
Q ss_pred EEeCchhhhh------hhcCCcccEEcCCCChHHHHHHHHHHh
Q 042728 300 LTSRKQDLLR------IDMNSQKNFQIDALPPKEALQLFEEIV 336 (486)
Q Consensus 300 vTtR~~~v~~------~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 336 (486)
.+|....... ........+.+++.+.++..+++....
T Consensus 320 ~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 7766543211 011223468999999999999887654
No 55
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.22 E-value=2.9e-05 Score=71.64 Aligned_cols=190 Identities=14% Similarity=0.117 Sum_probs=96.6
Q ss_pred ccCccccccHHHHHHHHHHHh---cc---------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC
Q 042728 154 VKDFEAFDSRMKVFQDVMEAL---RD---------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP 221 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 221 (486)
......++|.+..++.+.+.+ .. ...+-+.|+|++|+||||||+.+++.... ..+.++.+.-.
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~i~~~~~~ 82 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-----PFFTISGSDFV 82 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC-----CEEEECSCSST
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-----CEEEEeHHHHH
Confidence 344667889887777665543 21 12345889999999999999999987632 12334322211
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc--cccccCCCC-------Cccccc-ccC
Q 042728 222 DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE--LDKFGIPTG-------DVAEKD-RKD 291 (486)
Q Consensus 222 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~--~~~l~~~~~-------~~~~~~-~~~ 291 (486)
.. ........ ...+.+......+.++++|+++.... -..+..... .++..+ ...
T Consensus 83 ~~---------------~~~~~~~~-~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 83 EM---------------FVGVGASR-VRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp TS---------------CCCCCHHH-HHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred HH---------------hhhhhHHH-HHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence 10 00112222 22333333334678999999853210 000000000 000000 001
Q ss_pred CCCCcEEEEEeCchhhh-hhhcC---CcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCC-ChHHHHHH
Q 042728 292 DQRRCTIILTSRKQDLL-RIDMN---SQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGG-LPVALSTV 366 (486)
Q Consensus 292 ~~~~s~ilvTtR~~~v~-~~~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~G-lPlai~~~ 366 (486)
...+..||.||...... ..... -...+.++..+.++-.+++...+......++. ....++..+.| .+--|..+
T Consensus 147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHHHH
T ss_pred cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHHHHHHH
Confidence 23456677777665421 11111 23467888888888888888776532211111 13446677777 55544433
No 56
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.19 E-value=3.7e-06 Score=73.16 Aligned_cols=118 Identities=12% Similarity=0.154 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042728 163 RMKVFQDVMEALRD---DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG 239 (486)
Q Consensus 163 R~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 239 (486)
.+..++.+.+++.+ .....+.|+|++|+|||||++.+++.......+ .++++ +..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFF------DTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEE------EHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEE------EHHHHHHHHHHHhcCchH
Confidence 45556666665543 234679999999999999999999988633222 23333 344555555444321111
Q ss_pred CCCCHHHHHHHHHHHHhcCCcEEEEEeCCCC--cccccc--ccCCCCCcccccccCCCCCcEEEEEeCch
Q 042728 240 LNENEFQRAERLHERLKKEKQLLIILDNIWT--KLELDK--FGIPTGDVAEKDRKDDQRRCTIILTSRKQ 305 (486)
Q Consensus 240 ~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~--~~~~~~--l~~~~~~~~~~~~~~~~~~s~ilvTtR~~ 305 (486)
. .+.+.+. ++-+|||||++. .+.|.. +...+. .....|..+|+||...
T Consensus 92 ---~------~~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~-------~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 ---T------KFLKTVL--NSPVLVLDDLGSERLSDWQRELISYIIT-------YRYNNLKSTIITTNYS 143 (180)
T ss_dssp ---S------HHHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHH-------HHHHTTCEEEEECCCC
T ss_pred ---H------HHHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHH-------HHHHcCCCEEEEcCCC
Confidence 1 2233343 356899999973 233321 111010 0022467788888765
No 57
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.18 E-value=7.9e-06 Score=87.75 Aligned_cols=153 Identities=16% Similarity=0.219 Sum_probs=87.0
Q ss_pred CccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCC---CeEEEEEeCCCCCHHHHHHHHHH
Q 042728 156 DFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLF---DKVVMAEVTQTPDHHKIQNKLAF 232 (486)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~vs~~~~~~~~~~~i~~ 232 (486)
..++++||+.+++.+...|......-+.++|++|+|||++|+.+++........ ...-++.++-
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 356799999999999999977666678999999999999999999887432111 1111111111
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeCchhh-----
Q 042728 233 DLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDL----- 307 (486)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v----- 307 (486)
+.... .........+...+...++.+|++|. ..+..+.+...+ .....++|.||.....
T Consensus 245 --g~~~~--G~~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l----------~~~~v~~I~at~~~~~~~~~~ 308 (758)
T 3pxi_A 245 --GTKYR--GEFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSL----------ARGELQCIGATTLDEYRKYIE 308 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEECC----------CCCT----------TSSSCEEEEECCTTTTHHHHT
T ss_pred --ccccc--chHHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHH----------hcCCEEEEeCCChHHHHHHhh
Confidence 00000 00111222333333335678999992 112222222222 2334566766655441
Q ss_pred -hhhhcCCcccEEcCCCChHHHHHHHHHHhC
Q 042728 308 -LRIDMNSQKNFQIDALPPKEALQLFEEIVG 337 (486)
Q Consensus 308 -~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 337 (486)
..........+.+++.+.++..+++.....
T Consensus 309 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 111112335699999999999999987654
No 58
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=7.5e-06 Score=77.49 Aligned_cols=146 Identities=13% Similarity=0.065 Sum_probs=88.7
Q ss_pred cHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHc--cCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCC
Q 042728 162 SRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEE--NLFDKVVMAEVTQ-TPDHHKIQNKLAFDLGMEF 238 (486)
Q Consensus 162 gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~ 238 (486)
|-++.++.|...+..++.+...++|++|+||||+|..+++..... .+.+ +.+++.+. ...... .+++.+.+...+
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHHHHhhcc
Confidence 345567778888877777789999999999999999998764211 1333 34554433 233332 233444443221
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCcccccccCCCCCcEEEEEeCch-hhhhhhcCCc
Q 042728 239 GLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQ-DLLRIDMNSQ 315 (486)
Q Consensus 239 ~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~v~~~~~~~~ 315 (486)
. .+++-++|+|+++... ..+.+...+.. ....+.+|++|.+. .+.....+.
T Consensus 79 ~-----------------~~~~kvviIdead~lt~~a~naLLk~LEe--------p~~~t~fIl~t~~~~kl~~tI~SR- 132 (305)
T 2gno_A 79 E-----------------LYTRKYVIVHDCERMTQQAANAFLKALEE--------PPEYAVIVLNTRRWHYLLPTIKSR- 132 (305)
T ss_dssp S-----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHS--------CCTTEEEEEEESCGGGSCHHHHTT-
T ss_pred c-----------------cCCceEEEeccHHHhCHHHHHHHHHHHhC--------CCCCeEEEEEECChHhChHHHHce-
Confidence 1 1356799999998652 23333222221 33466777766544 333322233
Q ss_pred ccEEcCCCChHHHHHHHHHHh
Q 042728 316 KNFQIDALPPKEALQLFEEIV 336 (486)
Q Consensus 316 ~~~~l~~L~~~e~~~Lf~~~~ 336 (486)
.+++.+++.++..+.+.+..
T Consensus 133 -~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 133 -VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp -SEEEECCCCHHHHHHHHHHH
T ss_pred -eEeCCCCCHHHHHHHHHHHh
Confidence 99999999999999998876
No 59
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=2.4e-05 Score=77.10 Aligned_cols=177 Identities=15% Similarity=0.167 Sum_probs=95.3
Q ss_pred ccCccccccHHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC
Q 042728 154 VKDFEAFDSRMKVFQDVMEALRD-------------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT 220 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 220 (486)
.....++.|-++.+++|.+.+.- ..++-+.++|++|+|||+||+.+++..... .+.++.+.-
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l 242 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEF 242 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGT
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchh
Confidence 34456778888888887776521 245668999999999999999999887432 344444332
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc----------------cccccCCCCCc
Q 042728 221 PDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE----------------LDKFGIPTGDV 284 (486)
Q Consensus 221 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~----------------~~~l~~~~~~~ 284 (486)
.+. ...........+........++++++|+++.... +..+...+
T Consensus 243 ~~~----------------~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~l--- 303 (428)
T 4b4t_K 243 VHK----------------YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQM--- 303 (428)
T ss_dssp CCS----------------SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHH---
T ss_pred hcc----------------ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHh---
Confidence 110 0111122333333333345789999999963210 00110000
Q ss_pred ccccccCCCCCcEEEEEeCchhhhhh-hcC---CcccEEcCCCChHH-HHHHHHHHhCCCCCCCchHHHHHHHHHHcCCC
Q 042728 285 AEKDRKDDQRRCTIILTSRKQDLLRI-DMN---SQKNFQIDALPPKE-ALQLFEEIVGDSTKISAFQSTANEIVERCGGL 359 (486)
Q Consensus 285 ~~~~~~~~~~~s~ilvTtR~~~v~~~-~~~---~~~~~~l~~L~~~e-~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl 359 (486)
.......+..||.||........ ... -...|.++.++..+ -..+|+.++......++. ....|++.|.|.
T Consensus 304 ---dg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~--dl~~lA~~t~G~ 378 (428)
T 4b4t_K 304 ---DGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA--DLDSLIIRNDSL 378 (428)
T ss_dssp ---HHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC--CHHHHHHHTTTC
T ss_pred ---hCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHHCCCC
Confidence 00113445667778766543211 111 22457787675544 455666655432211111 135677777774
No 60
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.03 E-value=4e-05 Score=77.35 Aligned_cols=182 Identities=12% Similarity=0.129 Sum_probs=100.2
Q ss_pred CccccccHHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCC
Q 042728 156 DFEAFDSRMKVFQDVMEALRD-------------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPD 222 (486)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~ 222 (486)
....++|.+..+++|.+.+.. ...+-+.|+|++|+|||++|+.+++... ...+.++.+
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~-----~~fv~vn~~---- 272 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGP---- 272 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS-----SEEEEEEHH----
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC-----CCEEEEEch----
Confidence 345689999999988887642 3446789999999999999999987642 123344321
Q ss_pred HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc-------------cccccCCCCCcccccc
Q 042728 223 HHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE-------------LDKFGIPTGDVAEKDR 289 (486)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~~ 289 (486)
.+. ..+ ..........+......+++.+|+||+++.... ...+...+..
T Consensus 273 --~l~----~~~------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~------ 334 (489)
T 3hu3_A 273 --EIM----SKL------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG------ 334 (489)
T ss_dssp --HHH----TSC------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHH------
T ss_pred --Hhh----hhh------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhc------
Confidence 111 000 011112222233333335779999999853210 0111000000
Q ss_pred cCCCCCcEEEEEeCchhh-hhhhc---CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCC-hHHHH
Q 042728 290 KDDQRRCTIILTSRKQDL-LRIDM---NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGL-PVALS 364 (486)
Q Consensus 290 ~~~~~~s~ilvTtR~~~v-~~~~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl-Plai~ 364 (486)
.....+..||.||..... ..... .-...+.+...+.++-.++|..++........ .....+++.+.|. +-.+.
T Consensus 335 ~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~--~~l~~la~~t~g~s~~dL~ 412 (489)
T 3hu3_A 335 LKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHVGADLA 412 (489)
T ss_dssp SCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT--CCHHHHHHTCTTCCHHHHH
T ss_pred cccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch--hhHHHHHHHccCCcHHHHH
Confidence 013345667777765532 11111 22246899999999999999988764222111 1134567777774 43344
Q ss_pred HH
Q 042728 365 TV 366 (486)
Q Consensus 365 ~~ 366 (486)
.+
T Consensus 413 ~L 414 (489)
T 3hu3_A 413 AL 414 (489)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 61
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.00 E-value=6.7e-05 Score=75.20 Aligned_cols=176 Identities=15% Similarity=0.171 Sum_probs=97.3
Q ss_pred CccccccHHHHHHHHHHHh---ccC---------CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCH
Q 042728 156 DFEAFDSRMKVFQDVMEAL---RDD---------KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDH 223 (486)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L---~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~ 223 (486)
....++|.++.++++.+.+ ... .++-+.|+|++|+|||+||+.+++..... .+.++.+.-...
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~-----f~~is~~~~~~~ 88 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP-----FFHISGSDFVEL 88 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEEEGGGTTTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC-----eeeCCHHHHHHH
Confidence 4567889888776665543 221 23458899999999999999999876321 234444332211
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc----------------cccccCCCCCcccc
Q 042728 224 HKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE----------------LDKFGIPTGDVAEK 287 (486)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~----------------~~~l~~~~~~~~~~ 287 (486)
. ..........+........+.+|+||+++.... +..+...+..
T Consensus 89 ~----------------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~---- 148 (476)
T 2ce7_A 89 F----------------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDG---- 148 (476)
T ss_dssp C----------------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHH----
T ss_pred H----------------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhc----
Confidence 0 000112222233333334789999999965311 1111100000
Q ss_pred cccCCCCCcEEEEEeCchhhhhh-hcC---CcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCh
Q 042728 288 DRKDDQRRCTIILTSRKQDLLRI-DMN---SQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLP 360 (486)
Q Consensus 288 ~~~~~~~~s~ilvTtR~~~v~~~-~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 360 (486)
.....+..||.||........ ... -...+.++..+.++-.++++.++......++. ....|++.+.|..
T Consensus 149 --~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 149 --FDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV--NLEIIAKRTPGFV 221 (476)
T ss_dssp --SCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred --cCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh--hHHHHHHhcCCCc
Confidence 012345677777776643221 111 22378888888888888888777542211111 1345888898877
No 62
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.99 E-value=1.8e-06 Score=72.36 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=34.1
Q ss_pred ccccHHHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 159 AFDSRMKVFQDVMEALRD--DKLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 159 ~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.++|+...+.++.+.+.. ....-|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 478888888888877632 233447899999999999999998764
No 63
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.95 E-value=1.7e-05 Score=75.49 Aligned_cols=106 Identities=19% Similarity=0.273 Sum_probs=61.7
Q ss_pred cccccHHHHHHHHHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHH
Q 042728 158 EAFDSRMKVFQDVMEALRDD---------KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQN 228 (486)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 228 (486)
..++|.+..++.+...+... ....+.++|++|+|||++|+.+++..... -...+.++.+....... ..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~-~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA-VS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH-HH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc-HH
Confidence 35788888888888777432 13478999999999999999999887432 22345566554332211 11
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 042728 229 KLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 271 (486)
..++........ . ....+...+.....-+|+||+++..
T Consensus 94 ---~l~g~~~~~~~~-~-~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 94 ---RLIGAPPGYVGY-E-EGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp ---HHHCCCTTSTTT-T-TCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred ---HhcCCCCccccc-c-ccchHHHHHHhCCCeEEEEeChhhc
Confidence 112222110000 0 0012334444334579999999765
No 64
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.92 E-value=6.5e-05 Score=66.46 Aligned_cols=95 Identities=20% Similarity=0.271 Sum_probs=56.0
Q ss_pred cccccc----HHHHHHHHHHHhccC----CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHH
Q 042728 157 FEAFDS----RMKVFQDVMEALRDD----KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQN 228 (486)
Q Consensus 157 ~~~~~g----R~~~~~~l~~~L~~~----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 228 (486)
.+.|++ +...++.+.+++... ....+.|+|++|+|||+||+.+++..... ...++|++++ .+..
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~ 95 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFR 95 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHH
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHH
Confidence 444554 344556666666443 12678999999999999999999887644 3456666543 4444
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 042728 229 KLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWT 270 (486)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~ 270 (486)
.+...... .... .+...+.+ .-+|||||++.
T Consensus 96 ~~~~~~~~-----~~~~----~~~~~~~~--~~~lilDei~~ 126 (202)
T 2w58_A 96 ELKHSLQD-----QTMN----EKLDYIKK--VPVLMLDDLGA 126 (202)
T ss_dssp HHHHC--------CCCH----HHHHHHHH--SSEEEEEEECC
T ss_pred HHHHHhcc-----chHH----HHHHHhcC--CCEEEEcCCCC
Confidence 44332211 1111 22333332 23999999965
No 65
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.91 E-value=4.9e-05 Score=72.06 Aligned_cols=46 Identities=30% Similarity=0.310 Sum_probs=37.9
Q ss_pred cccccHHHHHHHHHHHhcc--------------CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 158 EAFDSRMKVFQDVMEALRD--------------DKLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..++|++..++.|...+.. .....+.|+|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999988877743 234568899999999999999999876
No 66
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.89 E-value=5e-06 Score=77.38 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=35.8
Q ss_pred cCccccccHHHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 155 KDFEAFDSRMKVFQDVMEALR---D---------DKLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.....++|.+..++.|.+.+. . ...+-+.|+|++|+|||+||+.+++...
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 345668887776666655442 1 1233477999999999999999998764
No 67
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.89 E-value=0.00019 Score=69.00 Aligned_cols=184 Identities=17% Similarity=0.154 Sum_probs=97.2
Q ss_pred ccCccccccHHHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHH
Q 042728 154 VKDFEAFDSRMKVFQDVMEALRD-----DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQN 228 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 228 (486)
+.....++|.+..++.+...+.. .....+.|+|++|+||||||+.+++..... |. ..+-+-.....
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~~---~~sg~~~~~~~---- 91 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--IH---VTSGPVLVKQG---- 91 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--EE---EEETTTCCSHH----
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--EE---EEechHhcCHH----
Confidence 33456788988888877766643 234678999999999999999999886421 11 11111111111
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccCCCCCccccc----------ccCCCCCc
Q 042728 229 KLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGIPTGDVAEKD----------RKDDQRRC 296 (486)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~----------~~~~~~~s 296 (486)
+. ..+...+ .++.++++|++.... ..+.+........... ........
T Consensus 92 -----------------~l-~~~~~~~--~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 92 -----------------DM-AAILTSL--ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp -----------------HH-HHHHHHC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCC
T ss_pred -----------------HH-HHHHHHc--cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 11 1111122 134577888876431 1111100000000000 00000112
Q ss_pred EEE-EEeCchhhhhhhcC-CcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHHH
Q 042728 297 TII-LTSRKQDLLRIDMN-SQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTVA 367 (486)
Q Consensus 297 ~il-vTtR~~~v~~~~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 367 (486)
.++ .|++...+...... ....+.+++.+.++-.+++.+.+..... .-..+.+..|++.+.|.|-.+..+.
T Consensus 152 ~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-EIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhcCCChHHHHHHH
Confidence 222 34444333221111 2235889999999999999887642111 2234678899999999997655443
No 68
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.83 E-value=0.00014 Score=73.00 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=37.0
Q ss_pred ccccccHHHHHHHHHHH---hccC--CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 157 FEAFDSRMKVFQDVMEA---LRDD--KLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~---L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
...++|.++.++.+... +..+ ..+-+.++|++|+|||+||+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 46789999887765444 3333 235788999999999999999998874
No 69
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.70 E-value=8e-05 Score=79.03 Aligned_cols=176 Identities=11% Similarity=0.148 Sum_probs=95.8
Q ss_pred ccccccHHHHHHHHHHHh----cc---------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCH
Q 042728 157 FEAFDSRMKVFQDVMEAL----RD---------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDH 223 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L----~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~ 223 (486)
.+.+.|-++.+++|.+.+ .. ..++-|.++|++|+|||+||+.+++.... ..+.++.+
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~-----~~~~v~~~----- 272 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGP----- 272 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC-----EEEEEEHH-----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----eEEEEEhH-----
Confidence 445667666666665554 21 23567899999999999999999976532 23444322
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc-------------cccccCCCCCccccccc
Q 042728 224 HKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE-------------LDKFGIPTGDVAEKDRK 290 (486)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~~~ 290 (486)
++. +.. ....+.....+.+......+++|+||+++.... ...+.... .. .
T Consensus 273 -~l~-------sk~---~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~m----dg--~ 335 (806)
T 3cf2_A 273 -EIM-------SKL---AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLM----DG--L 335 (806)
T ss_dssp -HHH-------SSC---TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHH----HH--C
T ss_pred -Hhh-------ccc---chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHH----hc--c
Confidence 111 000 111223333444444445789999999975310 00110000 00 0
Q ss_pred CCCCCcEEEEEeCchhhhhhhc----CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChH
Q 042728 291 DDQRRCTIILTSRKQDLLRIDM----NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPV 361 (486)
Q Consensus 291 ~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl 361 (486)
....+..||.||.......... .-...+.++.-+.++-.++|+.++.......+ .....|++++.|.--
T Consensus 336 ~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~d--vdl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 336 KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHVG 408 (806)
T ss_dssp CGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTT--CCHHHHHHHCCSCCH
T ss_pred cccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcc--cCHHHHHHhcCCCCH
Confidence 1223445666665543221111 12346889988999889999887654221111 114568888888643
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.58 E-value=3.3e-05 Score=82.92 Aligned_cols=155 Identities=17% Similarity=0.245 Sum_probs=84.6
Q ss_pred cccccHHHHHHHHHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHH
Q 042728 158 EAFDSRMKVFQDVMEALRDD---------KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQN 228 (486)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 228 (486)
..++|.+..++.+.+.+... ....+.++|++|+|||++|+.+++..... -...+.++++......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhccccc----
Confidence 46889999998888877421 12268999999999999999999887432 2345566654332110
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--ccccccC-----CCCCcccccccCCCCCcEEEEE
Q 042728 229 KLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL--ELDKFGI-----PTGDVAEKDRKDDQRRCTIILT 301 (486)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~-----~~~~~~~~~~~~~~~~s~ilvT 301 (486)
... ...+...+......+|+||++.... ....+.. .+... .-......+++||+|
T Consensus 565 ------------~~~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~--~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 565 ------------STS----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDS--KGRTVDFRNTILIMT 626 (758)
T ss_dssp ------------CCC-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-------CCBCTTCEEEEE
T ss_pred ------------ccc----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcC--CCCEeccCCeEEEEe
Confidence 000 1111222222334589999997542 1111110 00000 000012345688888
Q ss_pred eCchh-----h--------hhhhcC-CcccEEcCCCChHHHHHHHHHHh
Q 042728 302 SRKQD-----L--------LRIDMN-SQKNFQIDALPPKEALQLFEEIV 336 (486)
Q Consensus 302 tR~~~-----v--------~~~~~~-~~~~~~l~~L~~~e~~~Lf~~~~ 336 (486)
|.... + .....+ -...+.+.+++.++...++...+
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 87311 0 000112 22588999999999988887654
No 71
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.55 E-value=0.0006 Score=62.57 Aligned_cols=177 Identities=16% Similarity=0.170 Sum_probs=88.4
Q ss_pred ccCccccccHHHHHHHHHHH---hcc---------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC
Q 042728 154 VKDFEAFDSRMKVFQDVMEA---LRD---------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP 221 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~---L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 221 (486)
....+.++|.+....++.+. +.. .-.+-+.|+|++|+|||||++.++.... ...+.++..
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~--- 83 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS--- 83 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH---
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHH---
Confidence 34456788877665554443 221 1123389999999999999999997653 223333221
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc----------------cccccCCCCCcc
Q 042728 222 DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE----------------LDKFGIPTGDVA 285 (486)
Q Consensus 222 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~----------------~~~l~~~~~~~~ 285 (486)
.+. .. . ..........+.+......+.++++|+++.... ...+...+..
T Consensus 84 ---~~~----~~-~-----~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g-- 148 (254)
T 1ixz_A 84 ---DFV----EM-F-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG-- 148 (254)
T ss_dssp ---HHH----HS-C-----TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHT--
T ss_pred ---HHH----HH-H-----hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhC--
Confidence 111 10 0 000111222333333223568999999853210 0111000000
Q ss_pred cccccCCCCCcEEEEEeCchhhhhhhc----CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCC
Q 042728 286 EKDRKDDQRRCTIILTSRKQDLLRIDM----NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGL 359 (486)
Q Consensus 286 ~~~~~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl 359 (486)
........++.||.......... .-...+.++..+.++-.++++..+......++ .....+++.+.|.
T Consensus 149 ----~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~--~~~~~la~~~~G~ 220 (254)
T 1ixz_A 149 ----FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPGF 220 (254)
T ss_dssp ----CCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTC
T ss_pred ----CCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcc--cCHHHHHHHcCCC
Confidence 00222334555666655432111 22346888888988888888876643211111 1133466666664
No 72
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.53 E-value=0.00026 Score=67.00 Aligned_cols=45 Identities=13% Similarity=0.216 Sum_probs=35.6
Q ss_pred ccccHHHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 159 AFDSRMKVFQDVMEALRD--DKLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 159 ~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.++|+...+.++.+.+.. .....|.|+|++|+|||++|+.+.+..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 578888888888777643 334457899999999999999998764
No 73
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.53 E-value=0.00072 Score=69.31 Aligned_cols=166 Identities=20% Similarity=0.180 Sum_probs=78.9
Q ss_pred cccccHHHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042728 158 EAFDSRMKVFQDVMEALR------DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLA 231 (486)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (486)
..++|-+...+.+.+.+. ......+.++|++|+||||||+.++...... | ..++++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK--F---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE--E---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC--e---EEEEecccchhhhhhhHHH
Confidence 446777777666655431 1245689999999999999999999887322 2 2333333222222221111
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc------cccccCCCCCcccccccC-------CCCCcEE
Q 042728 232 FDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE------LDKFGIPTGDVAEKDRKD-------DQRRCTI 298 (486)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~~~-------~~~~s~i 298 (486)
...+.. .. ........... ..-+++||+++.... ...+...+.......+.. ......|
T Consensus 156 ~~ig~~------~~-~~~~~~~~a~~-~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~i 227 (543)
T 3m6a_A 156 TYVGAM------PG-RIIQGMKKAGK-LNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLF 227 (543)
T ss_dssp ---------------CHHHHHHTTCS-SSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEE
T ss_pred HHhccC------ch-HHHHHHHHhhc-cCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEE
Confidence 111110 00 11111111111 334888999986421 111211111000000000 1134567
Q ss_pred EEEeCchhhhh-hhcCCcccEEcCCCChHHHHHHHHHHh
Q 042728 299 ILTSRKQDLLR-IDMNSQKNFQIDALPPKEALQLFEEIV 336 (486)
Q Consensus 299 lvTtR~~~v~~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 336 (486)
|.||....... ........+.+++++.++-..++..++
T Consensus 228 I~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 228 IATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred EeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 77776543211 112223578999999999999988765
No 74
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.52 E-value=0.00059 Score=63.80 Aligned_cols=87 Identities=8% Similarity=0.049 Sum_probs=60.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG-----LNENEFQRAERLHER 254 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~ 254 (486)
.++-|.|++|+|||||+.+++.....+..-..++|++....++.. .+++++.+.+ .+.+.++....+.+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 378999999999999999998776543223478999988887763 3677776543 234555551233344
Q ss_pred H---hcCCcEEEEEeCCCCc
Q 042728 255 L---KKEKQLLIILDNIWTK 271 (486)
Q Consensus 255 L---~~~kr~LlVlDdv~~~ 271 (486)
+ ...++-|||+|-+...
T Consensus 104 l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTC
T ss_pred HHHhhccCceEEEEeccccc
Confidence 3 4467889999999754
No 75
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.49 E-value=0.0006 Score=65.54 Aligned_cols=86 Identities=19% Similarity=0.218 Sum_probs=60.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG-----LNENEFQRAERLHE 253 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 253 (486)
-.++.|.|++|+|||||+.+++...... -..++|++....++.. .++.++.... .+.+.++....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 4689999999999999999999877543 2457888887776654 4556665432 24456666666665
Q ss_pred HHhcCCcEEEEEeCCCCc
Q 042728 254 RLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 254 ~L~~~kr~LlVlDdv~~~ 271 (486)
.+...+.-++|+|.+...
T Consensus 134 l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHTSCCSEEEEECTTTC
T ss_pred HhhhcCCCeEEehHhhhh
Confidence 555445668999998654
No 76
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.48 E-value=0.002 Score=59.77 Aligned_cols=162 Identities=13% Similarity=0.165 Sum_probs=82.0
Q ss_pred cCccccccHHHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC
Q 042728 155 KDFEAFDSRMKVFQDVMEALR----D---------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP 221 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 221 (486)
.....+.|-++..+.|.+.+. . .-.+-+.|+|++|+||||||+.++..... ..++++.+.-.
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~ 81 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELL 81 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTC
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHH
Confidence 345567788887777766542 1 11233899999999999999999876432 24444432211
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccccccc--cCCCCCccc----cc-ccCCCC
Q 042728 222 DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLELDKF--GIPTGDVAE----KD-RKDDQR 294 (486)
Q Consensus 222 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l--~~~~~~~~~----~~-~~~~~~ 294 (486)
+.. ..........+.+......++++++|+++........ ......... .+ ......
T Consensus 82 ~~~----------------~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 82 NMY----------------VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp SST----------------THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred hhh----------------hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 100 0001111222333222235789999999753110000 000000000 00 001223
Q ss_pred CcEEEEEeCchhhhhhhc----CCcccEEcCCCChHHHHHHHHHHhC
Q 042728 295 RCTIILTSRKQDLLRIDM----NSQKNFQIDALPPKEALQLFEEIVG 337 (486)
Q Consensus 295 ~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~ 337 (486)
..-++.+|....+..... .-...+.++..+.++-.++|+....
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 445666776665432111 2345688899999999999988764
No 77
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.45 E-value=3.7e-05 Score=64.46 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=30.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ 219 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 219 (486)
....+.|+|+.|+|||||++.++...... .+ .+++++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 45689999999999999999999887542 11 256665543
No 78
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.39 E-value=0.0022 Score=59.71 Aligned_cols=178 Identities=16% Similarity=0.183 Sum_probs=90.1
Q ss_pred ccCccccccHHHHHHHHHHHh---cc---------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC
Q 042728 154 VKDFEAFDSRMKVFQDVMEAL---RD---------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP 221 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 221 (486)
....+.++|.+....++.+.. .. .-.+-+.|+|++|+|||||++.++.... ...+.++..
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~--- 107 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS--- 107 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH---
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-----CCEEEecHH---
Confidence 344567888877666554433 11 0122389999999999999999997753 223333321
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCcc------------c----cccccCCCCCcc
Q 042728 222 DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKL------------E----LDKFGIPTGDVA 285 (486)
Q Consensus 222 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~------------~----~~~l~~~~~~~~ 285 (486)
.+. ... ..........+.+......+.++++|+++... . ...+...+..
T Consensus 108 ---~~~----~~~------~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsg-- 172 (278)
T 1iy2_A 108 ---DFV----EMF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG-- 172 (278)
T ss_dssp ---HHH----HST------TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTT--
T ss_pred ---HHH----HHH------hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhC--
Confidence 111 100 00011122233333332356899999985321 0 0111000000
Q ss_pred cccccCCCCCcEEEEEeCchhhhhhh-c---CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCCh
Q 042728 286 EKDRKDDQRRCTIILTSRKQDLLRID-M---NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLP 360 (486)
Q Consensus 286 ~~~~~~~~~~s~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 360 (486)
........++.||......... . .-...+.++..+.++-.+++...+......++. ....++..+.|..
T Consensus 173 ----g~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 173 ----FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp ----CCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred ----CCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc--CHHHHHHHcCCCC
Confidence 0012233455566655432211 1 233578899999998888888776432211111 1335667777654
No 79
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.34 E-value=0.0004 Score=74.55 Aligned_cols=103 Identities=19% Similarity=0.257 Sum_probs=59.4
Q ss_pred cccccHHHHHHHHHHHhcc---------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHH
Q 042728 158 EAFDSRMKVFQDVMEALRD---------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQN 228 (486)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 228 (486)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++... ...+.++.+.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhh---
Confidence 4578998888888777632 1223689999999999999999998772 2345555554322100
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 042728 229 KLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 271 (486)
+...++.+.. ..-.+....+.+.+......+|+||+++..
T Consensus 530 -~~~l~g~~~g--~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 530 -VSRLIGAPPG--YVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp -CSSSCCCCSC--SHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred -HhhhcCCCCC--CcCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 0000111111 111111122344444345689999999864
No 80
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.32 E-value=0.0012 Score=63.59 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=58.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG-----LNENEFQRAERLH 252 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 252 (486)
.-.++.|.|++|+||||||.+++...... -..++|++....++.. .++.++.... .+.+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34689999999999999999998776543 3468899988776653 3555654422 1334555555444
Q ss_pred HHHhcCCcEEEEEeCCCCc
Q 042728 253 ERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 253 ~~L~~~kr~LlVlDdv~~~ 271 (486)
......+.-+||+|.+...
T Consensus 133 ~l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHHTTTCCSEEEEECGGGC
T ss_pred HHHhcCCCCEEEEcChHhh
Confidence 4444445679999998643
No 81
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.30 E-value=0.0024 Score=64.25 Aligned_cols=175 Identities=14% Similarity=0.168 Sum_probs=94.0
Q ss_pred ccCccccccHHHHHHHHHHHh---ccC---------CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC
Q 042728 154 VKDFEAFDSRMKVFQDVMEAL---RDD---------KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP 221 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L---~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 221 (486)
......++|.++.+.++.+.. ... -.+-+.|+|++|+||||||+.++.... ...+.++.+.-.
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~ 101 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFV 101 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGT
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHH
Confidence 344667889887766665543 221 123489999999999999999997753 223444433211
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc---CCcEEEEEeCCCCccc----------------cccccCCCC
Q 042728 222 DHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKK---EKQLLIILDNIWTKLE----------------LDKFGIPTG 282 (486)
Q Consensus 222 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~---~kr~LlVlDdv~~~~~----------------~~~l~~~~~ 282 (486)
.. .. ......+...++. ..+.++++|+++.... +..+...+.
T Consensus 102 ~~-----------------~~--g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 102 EM-----------------FV--GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp SS-----------------CT--THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred Hh-----------------hh--hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhc
Confidence 10 00 0111223333332 2358999999964310 011100000
Q ss_pred CcccccccCCCCCcEEEEEeCchhhhhhhc----CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCC
Q 042728 283 DVAEKDRKDDQRRCTIILTSRKQDLLRIDM----NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGG 358 (486)
Q Consensus 283 ~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~G 358 (486)
. .....+..++.||.......... .-...+.++..+.++-.++++.++......++ .....|+..+.|
T Consensus 163 g------~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d--v~l~~lA~~t~G 234 (499)
T 2dhr_A 163 G------FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPG 234 (499)
T ss_dssp G------CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS--STTHHHHTTSCS
T ss_pred c------cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH--HHHHHHHHhcCC
Confidence 0 01233455666776665422111 12347889999999888999877643221111 113457778888
Q ss_pred Ch
Q 042728 359 LP 360 (486)
Q Consensus 359 lP 360 (486)
+.
T Consensus 235 ~~ 236 (499)
T 2dhr_A 235 FV 236 (499)
T ss_dssp CC
T ss_pred CC
Confidence 66
No 82
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.28 E-value=0.0015 Score=58.25 Aligned_cols=86 Identities=17% Similarity=0.163 Sum_probs=53.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC-----------CCCCC-CHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGME-----------FGLNE-NEFQ 246 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----------~~~~~-~~~~ 246 (486)
-.++.|+|++|+|||||+..++. . . -..++|++.....+...+.. +.+.++.. ..... ....
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~-~--~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--L-S--GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--H-H--CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--H-c--CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 46899999999999999999988 1 1 35788888777666655443 33333221 11111 1123
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCCc
Q 042728 247 RAERLHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 247 ~~~~l~~~L~~~kr~LlVlDdv~~~ 271 (486)
....+...+.. ++-+||+|.+...
T Consensus 94 ~~~~~~~l~~~-~~~lliiD~~~~~ 117 (220)
T 2cvh_A 94 VIGSLKKTVDS-NFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHCCT-TEEEEEEECCCCC
T ss_pred HHHHHHHHhhc-CCCEEEEcCcHHH
Confidence 34444444433 5789999998654
No 83
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.26 E-value=0.0017 Score=62.85 Aligned_cols=86 Identities=17% Similarity=0.162 Sum_probs=59.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG-----LNENEFQRAERLHE 253 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 253 (486)
..++.|.|.+|+||||||.+++...... -..++|++....++.. .++.++.+.. .+.+.++....+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 4689999999999999999998876544 3478999988776653 2455655422 23455666665655
Q ss_pred HHhcCCcEEEEEeCCCCc
Q 042728 254 RLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 254 ~L~~~kr~LlVlDdv~~~ 271 (486)
.....+.-+||+|.+...
T Consensus 147 l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHTTTCCSEEEEECTTTC
T ss_pred HHhcCCCCEEEEeChHHh
Confidence 554445569999998643
No 84
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.26 E-value=0.00025 Score=66.61 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=46.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEe--CCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEV--TQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKK 257 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (486)
+++.|+|++|+|||+||.+++.. . -..++|++. ++..+. . ..+.+.....+.+.+..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-~----G~~VlyIs~~~eE~v~~-------------~---~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-L----GGKDKYATVRFGEPLSG-------------Y---NTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-H----HTTSCCEEEEBSCSSTT-------------C---BCCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-C----CCCEEEEEecchhhhhh-------------h---hcCHHHHHHHHHHHHhh
Confidence 56789999999999999999876 1 123566766 322110 0 13456666667777765
Q ss_pred CCcEEEEEeCCCCc
Q 042728 258 EKQLLIILDNIWTK 271 (486)
Q Consensus 258 ~kr~LlVlDdv~~~ 271 (486)
.+ +||+|++...
T Consensus 183 -~~-LLVIDsI~aL 194 (331)
T 2vhj_A 183 -HR-VIVIDSLKNV 194 (331)
T ss_dssp -CS-EEEEECCTTT
T ss_pred -CC-EEEEeccccc
Confidence 44 9999999654
No 85
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.24 E-value=0.0015 Score=59.15 Aligned_cols=92 Identities=16% Similarity=0.059 Sum_probs=57.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHcc----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCCCHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEEN----LFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG---------LNENEF 245 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 245 (486)
-.++.|+|++|+|||||+..++....... .-..++|++....+....+. .+++.++.... ...+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 36899999999999999999987532211 13578899877765554443 34455554320 122333
Q ss_pred H---HHHHHHHHHhcCCcEEEEEeCCCCc
Q 042728 246 Q---RAERLHERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 246 ~---~~~~l~~~L~~~kr~LlVlDdv~~~ 271 (486)
+ ....+.+.+...+.-+||+|++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 2 2333555555456789999998643
No 86
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.17 E-value=0.0019 Score=62.14 Aligned_cols=86 Identities=20% Similarity=0.194 Sum_probs=57.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG-----LNENEFQRAERLH 252 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 252 (486)
.-.++.|.|.+|+||||||.+++...... -..++|++....++.. .+..++.... .+.+.++....+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 34689999999999999999998877554 2468999988777643 2455554321 1234444444444
Q ss_pred HHHhcCCcEEEEEeCCCC
Q 042728 253 ERLKKEKQLLIILDNIWT 270 (486)
Q Consensus 253 ~~L~~~kr~LlVlDdv~~ 270 (486)
......+.-+||+|.+..
T Consensus 135 ~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHTCCSEEEEECGGG
T ss_pred HHHhccCCCEEEEcCHHH
Confidence 443334556999999853
No 87
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.15 E-value=0.00031 Score=66.12 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.+..+.++|++|+|||+||+.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346788999999999999999998873
No 88
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.15 E-value=0.00082 Score=72.22 Aligned_cols=156 Identities=11% Similarity=0.152 Sum_probs=84.7
Q ss_pred CccccccHHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCC
Q 042728 156 DFEAFDSRMKVFQDVMEALRD-------------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPD 222 (486)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~ 222 (486)
....++|.+..+++|.+++.. .....+.|+|++|+||||||+.++..... ..+.++.+.
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~-----~~i~v~~~~--- 273 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE--- 273 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC-----EEEEEEHHH---
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-----cEEEEEchH---
Confidence 346688988888888777632 23457899999999999999999876421 123333211
Q ss_pred HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccc-------------cccccCCCCCcccccc
Q 042728 223 HHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLE-------------LDKFGIPTGDVAEKDR 289 (486)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~~ 289 (486)
+.... ..........+.+......+.++++|+++.... ...+...+..
T Consensus 274 -----------l~~~~--~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g------ 334 (806)
T 1ypw_A 274 -----------IMSKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG------ 334 (806)
T ss_dssp -----------HSSSS--TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHS------
T ss_pred -----------hhhhh--hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhh------
Confidence 00000 111122222333333224678999999853210 0011000000
Q ss_pred cCCCCCcEEEEEeCchhhhhhhc----CCcccEEcCCCChHHHHHHHHHHhCC
Q 042728 290 KDDQRRCTIILTSRKQDLLRIDM----NSQKNFQIDALPPKEALQLFEEIVGD 338 (486)
Q Consensus 290 ~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~ 338 (486)
.....+..+|.||.......... .-...+.+...+.++-.+++...+..
T Consensus 335 ~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~ 387 (806)
T 1ypw_A 335 LKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp SCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT
T ss_pred hcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhc
Confidence 00223455666665543211111 12245788888999999999877653
No 89
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.11 E-value=0.0025 Score=61.30 Aligned_cols=92 Identities=14% Similarity=0.230 Sum_probs=58.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHcc----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------------CC
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEEN----LFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG------------LN 241 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------------~~ 241 (486)
.-.++.|+|++|+||||||.+++....... .-..++|++....++...+. .++..++.... ..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCH
Confidence 346899999999999999999987643211 13478999988877776554 34455554321 01
Q ss_pred CCHHHHHHHHHHHHhc--CCcEEEEEeCCCC
Q 042728 242 ENEFQRAERLHERLKK--EKQLLIILDNIWT 270 (486)
Q Consensus 242 ~~~~~~~~~l~~~L~~--~kr~LlVlDdv~~ 270 (486)
....+....+...+.. .+.-+||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 1122334445555543 4567999998854
No 90
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.08 E-value=0.0021 Score=61.26 Aligned_cols=91 Identities=24% Similarity=0.288 Sum_probs=60.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHcc----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCCCHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEEN----LFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG---------LNENEF 245 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 245 (486)
-.++.|+|++|+||||||.+++....... .-..++|++....++...+. .+++.++.+.. ...+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 46899999999999999999987643221 02478999988887776655 34556654321 122333
Q ss_pred ---HHHHHHHHHHhc-CCcEEEEEeCCCC
Q 042728 246 ---QRAERLHERLKK-EKQLLIILDNIWT 270 (486)
Q Consensus 246 ---~~~~~l~~~L~~-~kr~LlVlDdv~~ 270 (486)
+....+...+.. .+.-+||+|.+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 234455555554 4677999999864
No 91
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.03 E-value=0.0022 Score=61.02 Aligned_cols=91 Identities=20% Similarity=0.246 Sum_probs=59.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHcc---------CC-----CeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEEN---------LF-----DKVVMAEVTQTPDHHKIQNKLAFDLGMEFG----- 239 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----- 239 (486)
-.++.|.|++|+|||+||.+++....... .. ..++|++....++...+.. +++.++.+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 46899999999999999999987632110 11 4789999888877766654 4555654321
Q ss_pred ----CCCCHH---HHHHHHHHHHhc-CCcEEEEEeCCCC
Q 042728 240 ----LNENEF---QRAERLHERLKK-EKQLLIILDNIWT 270 (486)
Q Consensus 240 ----~~~~~~---~~~~~l~~~L~~-~kr~LlVlDdv~~ 270 (486)
...+.+ +....+...+.. .+.-+||+|.+..
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 122333 234455555654 4567999999853
No 92
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.02 E-value=0.0007 Score=73.54 Aligned_cols=61 Identities=20% Similarity=0.323 Sum_probs=43.3
Q ss_pred cccccHHHHHHHHHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC
Q 042728 158 EAFDSRMKVFQDVMEALRDD---------KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT 220 (486)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 220 (486)
..++|.+..++.+...+... ....+.|+|++|+|||++|+.+++..... -...+.++.+..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~--~~~~i~i~~~~~ 627 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEY 627 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS--GGGEEEECTTTC
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhc
Confidence 35789999888888777321 12478999999999999999999887432 123445555443
No 93
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.00 E-value=0.0037 Score=56.12 Aligned_cols=87 Identities=15% Similarity=0.199 Sum_probs=52.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-------------------
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG------------------- 239 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------------------- 239 (486)
-.++.|+|++|+|||||++.++...... -..++|++... ....+...+ ..++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCc
Confidence 3689999999999999999999766543 23566766543 344444333 23432211
Q ss_pred ----CCCCHHHHHHHHHHHHhcCCc--EEEEEeCCCC
Q 042728 240 ----LNENEFQRAERLHERLKKEKQ--LLIILDNIWT 270 (486)
Q Consensus 240 ----~~~~~~~~~~~l~~~L~~~kr--~LlVlDdv~~ 270 (486)
...+..+....+...+...++ .+||+|....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 011455555555555543233 4999999863
No 94
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.92 E-value=0.012 Score=56.31 Aligned_cols=165 Identities=10% Similarity=-0.028 Sum_probs=98.5
Q ss_pred HHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Q 042728 171 MEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAER 250 (486)
Q Consensus 171 ~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 250 (486)
.+.+...-.++..++|+.|.||++.+..+.+..... .|+....+.+....+..++...+..
T Consensus 10 ~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~------------------ 70 (343)
T 1jr3_D 10 RAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQA------------------ 70 (343)
T ss_dssp HHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHH------------------
T ss_pred HHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcC------------------
Confidence 333443456789999999999999999998876543 2432222233333444443332211
Q ss_pred HHHHHhcCCcEEEEEeCCCC-c--cccccccCCCCCcccccccCCCCCcEEEEEeCc-------hhhhhhhcCCcccEEc
Q 042728 251 LHERLKKEKQLLIILDNIWT-K--LELDKFGIPTGDVAEKDRKDDQRRCTIILTSRK-------QDLLRIDMNSQKNFQI 320 (486)
Q Consensus 251 l~~~L~~~kr~LlVlDdv~~-~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~-------~~v~~~~~~~~~~~~l 320 (486)
.-+- +++-++|+|+++. . ..++.+...+.. ...++.+|+++.. ..+..........++.
T Consensus 71 --~plf-~~~kvvii~~~~~kl~~~~~~aLl~~le~--------p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~ 139 (343)
T 1jr3_D 71 --MSLF-ASRQTLLLLLPENGPNAAINEQLLTLTGL--------LHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (343)
T ss_dssp --HHHC-CSCEEEEEECCSSCCCTTHHHHHHHHHTT--------CBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEE
T ss_pred --cCCc-cCCeEEEEECCCCCCChHHHHHHHHHHhc--------CCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEe
Confidence 1122 3567889999876 3 333433222222 3346666666543 1233323445678999
Q ss_pred CCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCChHHHHHH
Q 042728 321 DALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGLPVALSTV 366 (486)
Q Consensus 321 ~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 366 (486)
.+++.++....+.+.+..... .-..+.+..+++.++|.+..+...
T Consensus 140 ~~l~~~~l~~~l~~~~~~~g~-~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 140 QTPEQAQLPRWVAARAKQLNL-ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp CCCCTTHHHHHHHHHHHHTTC-EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred eCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhchHHHHHHHH
Confidence 999999999888887643221 122456788999999988877654
No 95
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.85 E-value=0.0053 Score=58.20 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=37.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFD 233 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 233 (486)
-.++.|.|.+|+||||||.+++.....++ ..++|++.. .+...+...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 35799999999999999999998776543 578888765 4455555555543
No 96
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.70 E-value=0.004 Score=60.90 Aligned_cols=91 Identities=14% Similarity=0.126 Sum_probs=56.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHcc----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCCCHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEEN----LFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG---------LNENEF 245 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 245 (486)
-.++.|+|++|+|||||+.+++-...... .-..++|++....+....+ ..+++.++.... ...+..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 46899999999999999998764432211 2346889987776665544 336666654321 122222
Q ss_pred ---HHHHHHHHHHhcCCcEEEEEeCCCC
Q 042728 246 ---QRAERLHERLKKEKQLLIILDNIWT 270 (486)
Q Consensus 246 ---~~~~~l~~~L~~~kr~LlVlDdv~~ 270 (486)
.....+...+...+.-+||+|.+..
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 2333444444445678999998743
No 97
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.68 E-value=0.0076 Score=56.46 Aligned_cols=87 Identities=16% Similarity=0.110 Sum_probs=49.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ-TPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLK 256 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 256 (486)
...+++|+|++|+||||++..++........ ..+..+.... .....+.+....+..+.+.....+.......+. .+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LFS 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-Hhc
Confidence 3578999999999999999999988764211 2455555432 223444444444444443322233333333333 332
Q ss_pred cCCcEEEEEeCC
Q 042728 257 KEKQLLIILDNI 268 (486)
Q Consensus 257 ~~kr~LlVlDdv 268 (486)
+.=++|+|-.
T Consensus 182 --~~dlvIiDT~ 191 (296)
T 2px0_A 182 --EYDHVFVDTA 191 (296)
T ss_dssp --GSSEEEEECC
T ss_pred --CCCEEEEeCC
Confidence 3457888843
No 98
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.67 E-value=0.0023 Score=56.32 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 162 SRMKVFQDVMEALRD---DKLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 162 gR~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
.|++.++.|.+.+.. ....+|+|.|++|+||||+++.+......
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356677788877754 34578999999999999999999887654
No 99
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.65 E-value=0.011 Score=53.50 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=30.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ 219 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 219 (486)
-.++.|.|++|+|||||+.+++...... -..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence 3579999999999999999888766543 34678887554
No 100
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.61 E-value=0.012 Score=57.93 Aligned_cols=29 Identities=34% Similarity=0.480 Sum_probs=25.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
.+.+|.++|.+|+||||++..++.....+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46799999999999999999999887654
No 101
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.59 E-value=0.007 Score=54.19 Aligned_cols=91 Identities=21% Similarity=0.244 Sum_probs=52.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHc---c-CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCCCHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEE---N-LFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG---------LNENEF 245 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 245 (486)
-.+++|+|++|+|||||++.++...... . ....++|+.-........ ...+.+..+.... ......
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSN 103 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCChH
Confidence 3689999999999999999998754321 1 134578887655444333 3344444433211 011111
Q ss_pred ---HHHHHHHHHHh-----cCCcEEEEEeCCCC
Q 042728 246 ---QRAERLHERLK-----KEKQLLIILDNIWT 270 (486)
Q Consensus 246 ---~~~~~l~~~L~-----~~kr~LlVlDdv~~ 270 (486)
.....+...+. ..++-+||+|..-.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 104 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 12333444444 45678999998754
No 102
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.58 E-value=0.00073 Score=56.01 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=31.8
Q ss_pred ccccHHHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 159 AFDSRMKVFQDVMEALRD--DKLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 159 ~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.++|++..++++.+.+.. ....-|.|+|++|+|||++|+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 467888888877777642 23344779999999999999998754
No 103
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.55 E-value=0.015 Score=55.34 Aligned_cols=50 Identities=8% Similarity=0.120 Sum_probs=36.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAF 232 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (486)
-.++.|.|.+|+||||||..++...... -..++|++.. .+...+...++.
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlE--ms~~ql~~Rlls 95 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLE--MSAEQLALRALS 95 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCC--CCHHHHHHHHHH
Confidence 3579999999999999999999887653 3467777653 445555555543
No 104
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.55 E-value=0.0028 Score=56.13 Aligned_cols=41 Identities=24% Similarity=0.411 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 165 KVFQDVMEALRD--DKLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 165 ~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
+.+++|.+.+.. +...+++|+|++|+|||||++.+......
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456666666643 35578999999999999999999887753
No 105
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.54 E-value=0.03 Score=55.28 Aligned_cols=90 Identities=21% Similarity=0.289 Sum_probs=49.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ-TPDHHKIQNKLAFDLGMEFG---LNENEFQRAERLHE 253 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 253 (486)
.+++|.++|.+|+||||++..++.....+.. ..+..++... .....+.+.......+.+.- ...+..........
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G-~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHK-KKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSC-CCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcC-CeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 4579999999999999999999988876412 2445555543 22333333334444444321 11234444344444
Q ss_pred HHhcCCcEEEEEeCC
Q 042728 254 RLKKEKQLLIILDNI 268 (486)
Q Consensus 254 ~L~~~kr~LlVlDdv 268 (486)
.+..+.-=++|+|-.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 443112225666764
No 106
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.51 E-value=0.0039 Score=59.85 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=54.0
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCC-eEEEEEeCCCCCH-HHHHHHHHHHhCCCCCCCCCHHH
Q 042728 170 VMEALRD-DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFD-KVVMAEVTQTPDH-HKIQNKLAFDLGMEFGLNENEFQ 246 (486)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~vs~~~~~-~~~~~~i~~~l~~~~~~~~~~~~ 246 (486)
.++.+.. ..-..++|+|++|+|||||++.+.+..... +-+ .++++-+.+.... .++.+.+ +..-.......+...
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~-~~~v~~I~~lIGER~~Ev~~~~~~~-~~~vV~atadep~~~ 241 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN-HPDCVLMVLLIDERPEEVTEMQRLV-KGEVVASTFDEPASR 241 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHH-CTTSEEEEEEESSCHHHHHHHHTTC-SSEEEEECTTSCHHH
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhc-CCCeeEEEEEecCChHHHHHHHHHh-CeEEEEeCCCCCHHH
Confidence 3444432 334679999999999999999998876543 223 2446777766532 2222222 000000111222222
Q ss_pred HH------HHHHHHHh-cCCcEEEEEeCCCCc
Q 042728 247 RA------ERLHERLK-KEKQLLIILDNIWTK 271 (486)
Q Consensus 247 ~~------~~l~~~L~-~~kr~LlVlDdv~~~ 271 (486)
.. -.+-+++. .++.+||++||+-..
T Consensus 242 r~~~a~~alt~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 242 HVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEeCchHH
Confidence 11 11223333 368999999998644
No 107
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.48 E-value=0.0039 Score=59.57 Aligned_cols=161 Identities=11% Similarity=0.081 Sum_probs=84.7
Q ss_pred ccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 042728 157 FEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGM 236 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 236 (486)
...++|++..++.+...+..+. -+.++|++|+|||+||+.+++.... ....+..+......++..... .
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~~~-----~~~~i~~~~~~~~~~l~g~~~----~ 94 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTMDL-----DFHRIQFTPDLLPSDLIGTMI----Y 94 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHTTC-----CEEEEECCTTCCHHHHHEEEE----E
T ss_pred ccceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHhCC-----CeEEEecCCCCChhhcCCcee----e
Confidence 3468899999998888876643 4889999999999999999876532 123344444444443321110 0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC--CcEEEEEeCCCCcc--ccccccCCCCCc---ccccccCCCCCcEEEEEeCchh---
Q 042728 237 EFGLNENEFQRAERLHERLKKE--KQLLIILDNIWTKL--ELDKFGIPTGDV---AEKDRKDDQRRCTIILTSRKQD--- 306 (486)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~L~~~--kr~LlVlDdv~~~~--~~~~l~~~~~~~---~~~~~~~~~~~s~ilvTtR~~~--- 306 (486)
... ... . .+..+ ...+|++|+++... ....+...+... .............|+.|+....
T Consensus 95 ~~~-~~~-------~--~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~ 164 (331)
T 2r44_A 95 NQH-KGN-------F--EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEG 164 (331)
T ss_dssp ETT-TTE-------E--EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSC
T ss_pred cCC-CCc-------e--EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccC
Confidence 000 000 0 00000 12589999987542 111110000000 0000000223455666665322
Q ss_pred ---hhhhhcCCcc-cEEcCCCChHHHHHHHHHHhCC
Q 042728 307 ---LLRIDMNSQK-NFQIDALPPKEALQLFEEIVGD 338 (486)
Q Consensus 307 ---v~~~~~~~~~-~~~l~~L~~~e~~~Lf~~~~~~ 338 (486)
+......... .+.+++.+.++-.+++......
T Consensus 165 ~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 165 TYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred cccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 1111122223 5899999999999999887753
No 108
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.46 E-value=0.0018 Score=68.72 Aligned_cols=183 Identities=11% Similarity=0.132 Sum_probs=81.0
Q ss_pred ccCccccccHHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC
Q 042728 154 VKDFEAFDSRMKVFQDVMEALRD-------------DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT 220 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 220 (486)
......+.|-++..+.|.+.+.- ...+-+.++|++|+|||.+|+.+++..... ++.++
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~-- 543 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIK-- 543 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECC--
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEec--
Confidence 33445667888888877766521 123457899999999999999999876421 22222
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCCccccccc-----cCC----CCCcccccc-c
Q 042728 221 PDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQLLIILDNIWTKLELDKF-----GIP----TGDVAEKDR-K 290 (486)
Q Consensus 221 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l-----~~~----~~~~~~~~~-~ 290 (486)
..+++ ... - ..+ +.....+.+..+...+++|+||+++....-..- ... ...++..+- .
T Consensus 544 --~~~l~----s~~----v-Ges-e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~ 611 (806)
T 3cf2_A 544 --GPELL----TMW----F-GES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 611 (806)
T ss_dssp --HHHHH----TTT----C-SSC-HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSS
T ss_pred --cchhh----ccc----c-chH-HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCC
Confidence 11211 110 0 122 334445555555457899999999753100000 000 000000000 0
Q ss_pred CCCCCcEEEEEeCchhhh-hhhc---CCcccEEcCCCChHHHHHHHHHHhCCCCCCCchHHHHHHHHHHcCCC
Q 042728 291 DDQRRCTIILTSRKQDLL-RIDM---NSQKNFQIDALPPKEALQLFEEIVGDSTKISAFQSTANEIVERCGGL 359 (486)
Q Consensus 291 ~~~~~s~ilvTtR~~~v~-~~~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl 359 (486)
....+.-||.||...... .... .-...+.++.-+.++-.++|+.++......++. ....|++.+.|.
T Consensus 612 ~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~--dl~~la~~t~g~ 682 (806)
T 3cf2_A 612 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGF 682 (806)
T ss_dssp CSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---------------
T ss_pred CCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHhCCCC
Confidence 122344444455444321 1111 233567777667777777777766532222211 134566666663
No 109
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.44 E-value=0.019 Score=56.46 Aligned_cols=38 Identities=29% Similarity=0.237 Sum_probs=28.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEe
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEV 217 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v 217 (486)
...+|.++|++|+||||++..++.....++ ..+..++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEec
Confidence 357999999999999999999998876542 23444443
No 110
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.41 E-value=0.014 Score=52.85 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=27.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh-HccCCCeEEEEEeC
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVM-EENLFDKVVMAEVT 218 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~vs 218 (486)
-.+++|+|++|+|||||++.++.... .. -..++++...
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~ 68 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLE 68 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEcc
Confidence 46899999999999999999985433 22 3445565543
No 111
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.40 E-value=0.0017 Score=62.51 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=36.7
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 155 KDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 155 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.+...++|.+.....+...+......-+.|+|++|+|||+||+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34567899988766654444333334488999999999999999998654
No 112
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.32 E-value=0.011 Score=68.32 Aligned_cols=85 Identities=20% Similarity=0.185 Sum_probs=60.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG-----LNENEFQRAERLH 252 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 252 (486)
..+.+.|+|++|+|||+||.++......+ =..++|+++...++... ++.++.+.. .+.+.+.....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 45789999999999999999998876543 34678888888776655 455553321 2334455555555
Q ss_pred HHHhcCCcEEEEEeCCC
Q 042728 253 ERLKKEKQLLIILDNIW 269 (486)
Q Consensus 253 ~~L~~~kr~LlVlDdv~ 269 (486)
...+..+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 55555677899999985
No 113
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.30 E-value=0.0024 Score=58.86 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=39.1
Q ss_pred ccccccHHHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC
Q 042728 157 FEAFDSRMKVFQDVMEALRD--DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT 220 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 220 (486)
.+.++|++..+..+.+.+.. .....+.|+|++|+|||++|+.+++..... -...+.++++..
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~ 68 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAAL 68 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGS
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCC
Confidence 45678988888877766532 233557899999999999999998765322 123455655543
No 114
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.28 E-value=0.0057 Score=60.55 Aligned_cols=91 Identities=22% Similarity=0.315 Sum_probs=54.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC------CCCCCCHHHH-----
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGME------FGLNENEFQR----- 247 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~~----- 247 (486)
+.++|+|.+|+|||||++.+......+ +.+..+++.+.+.. ...+++.++...=... .....+....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 458899999999999999999887654 23445667776655 4445555554320000 0111221111
Q ss_pred -HHHHHHHHh--cCCcEEEEEeCCCCc
Q 042728 248 -AERLHERLK--KEKQLLIILDNIWTK 271 (486)
Q Consensus 248 -~~~l~~~L~--~~kr~LlVlDdv~~~ 271 (486)
.-.+.+++. .+++.||++||+...
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR~ 257 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFRF 257 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 123444443 378999999999543
No 115
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.23 E-value=0.0028 Score=54.38 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.+|.|.|++|+||||+++.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999998765
No 116
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.22 E-value=0.003 Score=53.73 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.+|+|.|++|+||||+++.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987753
No 117
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.22 E-value=0.074 Score=63.76 Aligned_cols=147 Identities=14% Similarity=0.045 Sum_probs=75.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEK 259 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (486)
+-+.++|++|+|||++|+.+.... ..+ ..+.++.+...+...+.+.+-..+......... +..-...++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~-------~~~P~~~gk 1336 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGL-------TLLPKSDIK 1336 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTE-------EEEEBSSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCc-------cccCCCCCc
Confidence 457899999999999998776542 112 455677887777777766666554321100000 000000257
Q ss_pred cEEEEEeCCCCc--ccc------ccccCCC--CCccccc--ccCCCCCcEEEEEeCchh------hhhhhcCCcccEEcC
Q 042728 260 QLLIILDNIWTK--LEL------DKFGIPT--GDVAEKD--RKDDQRRCTIILTSRKQD------LLRIDMNSQKNFQID 321 (486)
Q Consensus 260 r~LlVlDdv~~~--~~~------~~l~~~~--~~~~~~~--~~~~~~~s~ilvTtR~~~------v~~~~~~~~~~~~l~ 321 (486)
++++++||+.-. +.| +-+...+ ..+.... ....-.+..+|.++.... +..........+.++
T Consensus 1337 ~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~ 1416 (2695)
T 4akg_A 1337 NLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLG 1416 (2695)
T ss_dssp CEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECC
T ss_pred eEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeC
Confidence 899999997532 111 0000000 0000000 000001234555553331 111123344678888
Q ss_pred CCChHHHHHHHHHHhC
Q 042728 322 ALPPKEALQLFEEIVG 337 (486)
Q Consensus 322 ~L~~~e~~~Lf~~~~~ 337 (486)
..+.++-..+|.....
T Consensus 1417 ~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp CCTTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888888888877653
No 118
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.20 E-value=0.026 Score=52.95 Aligned_cols=89 Identities=20% Similarity=0.191 Sum_probs=50.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCHHHH-HHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGMEFG---LNENEFQR-AERLH 252 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~-~~~l~ 252 (486)
...++.|+|++|+||||++..++...... -..+.++...... ...+-+...++.++.+.- ...+.... ...+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 45789999999999999999999887653 2345555543221 122223445555554321 12233222 23344
Q ss_pred HHHhcCCcEEEEEeCCC
Q 042728 253 ERLKKEKQLLIILDNIW 269 (486)
Q Consensus 253 ~~L~~~kr~LlVlDdv~ 269 (486)
..+.. +.-++|+|-.-
T Consensus 181 ~a~~~-~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALAR-NKDVVIIDTAG 196 (306)
T ss_dssp HHHHT-TCSEEEEEECC
T ss_pred HHHhc-CCCEEEEECCC
Confidence 44543 44478889764
No 119
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.19 E-value=0.044 Score=51.26 Aligned_cols=89 Identities=24% Similarity=0.200 Sum_probs=54.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT-PDHHKIQNKLAFDLGMEFG---LNENEFQRAERLHER 254 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 254 (486)
..++.++|.+|+||||++..++...... -..+.++..... +...+.+....+..+.+.- ...+.........+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999887654 234666665433 2333344455555555321 123555555455555
Q ss_pred HhcCCcEEEEEeCCC
Q 042728 255 LKKEKQLLIILDNIW 269 (486)
Q Consensus 255 L~~~kr~LlVlDdv~ 269 (486)
+..+..=++|+|-.-
T Consensus 176 ~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred HHhCCCCEEEEeCCC
Confidence 542222377888754
No 120
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.17 E-value=0.028 Score=55.47 Aligned_cols=91 Identities=21% Similarity=0.288 Sum_probs=59.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC------------CCCCCCHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGME------------FGLNENEF 245 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~------------~~~~~~~~ 245 (486)
-..++|.|.+|+|||+|+.++.+..... +-+.++++-+.+.. ...++.+++...=... ...+.+..
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~ 231 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPG 231 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTT-CSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhh-CCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHH
Confidence 3568999999999999999999875432 35677888888766 5566777776652221 01122222
Q ss_pred H------HHHHHHHHHhc--CCcEEEEEeCCCC
Q 042728 246 Q------RAERLHERLKK--EKQLLIILDNIWT 270 (486)
Q Consensus 246 ~------~~~~l~~~L~~--~kr~LlVlDdv~~ 270 (486)
. ..-.+-+++.. ++.+||++||+-.
T Consensus 232 ~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 232 ARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1 12334455543 7899999999854
No 121
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.16 E-value=0.013 Score=56.19 Aligned_cols=93 Identities=20% Similarity=0.255 Sum_probs=54.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCC----CeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCCC-
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLF----DKVVMAEVTQTPDHHKIQNKLAFDLGMEFG---------LNEN- 243 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~- 243 (486)
.-.++.|+|++|+|||||+.+++......... ..++|++....+....+ ..+.+..+.... ...+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 34689999999999999999998765211011 24588887665543333 334444433210 0111
Q ss_pred --HHHHHHHHHHHHhc-----CCcEEEEEeCCCCc
Q 042728 244 --EFQRAERLHERLKK-----EKQLLIILDNIWTK 271 (486)
Q Consensus 244 --~~~~~~~l~~~L~~-----~kr~LlVlDdv~~~ 271 (486)
..+....+...+.. .++-+||+|.+-..
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 12233444444432 36789999998654
No 122
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.13 E-value=0.0064 Score=54.33 Aligned_cols=41 Identities=15% Similarity=0.248 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 164 MKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 164 ~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
++..+.+...+.......|+|+|.+|+|||||+..+.....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34445555555556678899999999999999999987764
No 123
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.11 E-value=0.012 Score=55.43 Aligned_cols=54 Identities=17% Similarity=0.290 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHHhccC---CccEEEEEcCCCCcHHHHHHHHHHHHh-HccCCCeEEEEEe
Q 042728 162 SRMKVFQDVMEALRDD---KLNIIGVHGMGGVGKTTIVKQVAKQVM-EENLFDKVVMAEV 217 (486)
Q Consensus 162 gR~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~v 217 (486)
++...+..+.+++... ....+.|+|++|+|||+||..+++... .. -..+.++++
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~--g~~v~~~~~ 189 (308)
T 2qgz_A 132 SRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK--GVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS--CCCEEEEEH
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEH
Confidence 3455555666666542 246788999999999999999999876 44 234555554
No 124
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.08 E-value=0.0039 Score=54.73 Aligned_cols=26 Identities=35% Similarity=0.430 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...+|.|+|++|+||||+++.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999776
No 125
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.06 E-value=0.0023 Score=57.14 Aligned_cols=112 Identities=10% Similarity=-0.036 Sum_probs=61.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCHHHHHHHHHHHHh
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGL--NENEFQRAERLHERLK 256 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~L~ 256 (486)
-.++.|+|..|+||||++..++++...+ -..++.++..... . ....+++.++..... .....+....+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 4688999999999999999999888654 2234444333221 1 122344445443221 1122333333433333
Q ss_pred cCCcEEEEEeCCCCc--cccccccCCCCCcccccccCCCCCcEEEEEeCchh
Q 042728 257 KEKQLLIILDNIWTK--LELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQD 306 (486)
Q Consensus 257 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 306 (486)
.++.-+||+|.+... +.++.+ ..+ ...|..||+|.+...
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l-~~L----------~~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVA-NIL----------AENGFVVIISGLDKN 127 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHH-HHH----------HHTTCEEEEECCSBC
T ss_pred CCCCCEEEEecCccCcHHHHHHH-HHH----------HhCCCeEEEEecccc
Confidence 334459999999643 122222 111 123788999988543
No 126
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.06 E-value=0.0045 Score=54.37 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=25.4
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 176 DDKLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 176 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.....+|+|+|++|+||||+++.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567899999999999999999998876
No 127
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.06 E-value=0.05 Score=50.81 Aligned_cols=40 Identities=33% Similarity=0.233 Sum_probs=29.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeC
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVT 218 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs 218 (486)
.-.+++|.|++|+|||||+..++....... -..++|++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCc
Confidence 335899999999999999999998776541 1146676653
No 128
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.05 E-value=0.078 Score=50.26 Aligned_cols=58 Identities=24% Similarity=0.269 Sum_probs=38.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC-CCCHHHHHHHHHHHhCC
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ-TPDHHKIQNKLAFDLGM 236 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~ 236 (486)
....+++|+|+.|+||||+++.++...... -..+.++...- .....+-+....+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~--~g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH--GFSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCEEEEEeecccccchHHHHHHHHHHcCc
Confidence 456799999999999999999999877653 22344443322 22344455555666664
No 129
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.04 E-value=0.0042 Score=53.63 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.+.|.|+|++|+||||+++.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998776
No 130
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.03 E-value=0.0046 Score=54.32 Aligned_cols=27 Identities=37% Similarity=0.513 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
....+|+|+|+.|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345789999999999999999998765
No 131
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.03 E-value=0.0041 Score=53.64 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.+++|+|++|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998764
No 132
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.02 E-value=0.031 Score=52.23 Aligned_cols=88 Identities=19% Similarity=0.191 Sum_probs=50.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCC-HHHHHHHHHHHhCCCCC---CCCCHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPD-HHKIQNKLAFDLGMEFG---LNENEFQRAERLHER 254 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 254 (486)
..+++|+|.+|+||||++..++...... -..+.++....... ....+..+.+..+.+.- ...++.++.......
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~ 175 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999887654 23455555433221 11223344555554321 123455554433333
Q ss_pred HhcCCcEEEEEeCC
Q 042728 255 LKKEKQLLIILDNI 268 (486)
Q Consensus 255 L~~~kr~LlVlDdv 268 (486)
+...+.=++|+|-.
T Consensus 176 ~~~~~~D~viiDtp 189 (295)
T 1ls1_A 176 ARLEARDLILVDTA 189 (295)
T ss_dssp HHHHTCCEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 32113457888876
No 133
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.02 E-value=0.028 Score=56.01 Aligned_cols=52 Identities=10% Similarity=0.041 Sum_probs=37.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFD 233 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 233 (486)
..++.|.|.+|+||||||.+++....... -..++|++.. .+...+...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHH
Confidence 35799999999999999999998876531 2357787664 4455666665543
No 134
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.01 E-value=0.0035 Score=53.42 Aligned_cols=20 Identities=35% Similarity=0.615 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQV 199 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v 199 (486)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 135
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.96 E-value=0.089 Score=52.89 Aligned_cols=29 Identities=34% Similarity=0.424 Sum_probs=24.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
...+|.|+|.+|+||||++..++.....+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 35689999999999999999999887654
No 136
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.95 E-value=0.028 Score=56.11 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=35.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLA 231 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (486)
-.++.|.|.+|+|||||+.+++....... -..++|++... +...+...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 35799999999999999999998876531 23577877543 3445554443
No 137
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.95 E-value=0.0043 Score=53.20 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAK 201 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~ 201 (486)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 138
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.94 E-value=0.0041 Score=53.07 Aligned_cols=24 Identities=42% Similarity=0.468 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.+|+|+|++|+||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998764
No 139
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.91 E-value=0.0088 Score=55.82 Aligned_cols=55 Identities=24% Similarity=0.125 Sum_probs=35.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhHcc-CCCeEEEEEeCCCCCHHHHHHHHH
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQVMEEN-LFDKVVMAEVTQTPDHHKIQNKLA 231 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~wv~vs~~~~~~~~~~~i~ 231 (486)
....+|+|+|++|+|||||++.+.......+ ....+..|+...-.-.......+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 3567899999999999999999988775431 123344445544333334444443
No 140
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.88 E-value=0.0048 Score=54.20 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..+|+|.|++|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998776
No 141
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.88 E-value=0.0043 Score=62.54 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=36.7
Q ss_pred cccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 158 EAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..++|++..++.+...+..+. -+.|+|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHH
Confidence 357899999988887776554 48899999999999999998765
No 142
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.87 E-value=0.0054 Score=53.21 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
.+|.|.|++|+||||+++.+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999988753
No 143
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.87 E-value=0.0049 Score=53.49 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
..+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999754
No 144
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.86 E-value=0.006 Score=52.97 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..+|.|.|++|+||||+++.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998765
No 145
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.85 E-value=0.026 Score=64.60 Aligned_cols=87 Identities=20% Similarity=0.184 Sum_probs=62.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG-----LNENEFQRAERLH 252 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 252 (486)
.-.++.|.|++|+||||||.+++...... -..++|++....++.. .++.++.+.. .+.+.++....+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 34689999999999999999998877654 3578999888877664 2566665432 2345566665555
Q ss_pred HHHhcCCcEEEEEeCCCCc
Q 042728 253 ERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 253 ~~L~~~kr~LlVlDdv~~~ 271 (486)
......+.-+||+|.+...
T Consensus 455 ~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTC
T ss_pred HHHHhcCCCEEEECCHHHh
Confidence 5554456679999998754
No 146
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.85 E-value=0.0072 Score=53.78 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 163 RMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 163 R~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
..+....+...+.....++|+|+|.+|+|||||+..+.....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344455555555555778999999999999999999988763
No 147
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.85 E-value=0.0087 Score=57.95 Aligned_cols=45 Identities=18% Similarity=0.103 Sum_probs=36.1
Q ss_pred ccccHHHHHHHHHHHhc-------------c--CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 159 AFDSRMKVFQDVMEALR-------------D--DKLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 159 ~~~gR~~~~~~l~~~L~-------------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.++|.+..++.+...+. . .....+.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46898888888887772 1 134568899999999999999999876
No 148
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.82 E-value=0.0062 Score=52.77 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
.+|.|.|++|+||||+++.+......
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999987753
No 149
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.80 E-value=0.0059 Score=52.50 Aligned_cols=25 Identities=44% Similarity=0.531 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.+.|.|.|++|+||||+++.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998775
No 150
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.79 E-value=0.013 Score=55.82 Aligned_cols=45 Identities=27% Similarity=0.369 Sum_probs=32.7
Q ss_pred ccHHHHHHHHHHHh----ccCCccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 161 DSRMKVFQDVMEAL----RDDKLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 161 ~gR~~~~~~l~~~L----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
++-+...+.+++.+ ..+....|.|+|++|+||||+++.++.....
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 34445555555555 3445567999999999999999999887654
No 151
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.77 E-value=0.0086 Score=50.83 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
..+++.|+|+.|+|||||+..+......+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35789999999999999999999887654
No 152
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.76 E-value=0.0072 Score=52.25 Aligned_cols=29 Identities=34% Similarity=0.487 Sum_probs=25.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
...+|.|.|++|+||||+++.+.......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 44689999999999999999999887653
No 153
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.73 E-value=0.0059 Score=52.24 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
+.|.|.|++|+||||+|+.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999987753
No 154
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.72 E-value=0.046 Score=54.25 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=31.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ 219 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 219 (486)
-.++.|.|.+|+||||+|.+++.+...+ -..++|++...
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm 235 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM 235 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC
Confidence 3579999999999999999999887665 24677876653
No 155
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.70 E-value=0.011 Score=57.44 Aligned_cols=46 Identities=20% Similarity=0.141 Sum_probs=34.9
Q ss_pred cccccHHHHHHHHHHHhc------------------------------cCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 158 EAFDSRMKVFQDVMEALR------------------------------DDKLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 158 ~~~~gR~~~~~~l~~~L~------------------------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..++|.+..++.|...+. ......+.++|++|+|||++|+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 346788888777776651 0123468899999999999999999876
No 156
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.70 E-value=0.0062 Score=53.64 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...+|+|+|++|+|||||++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34679999999999999999998765
No 157
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.69 E-value=0.0073 Score=53.41 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...+++|+|++|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 44689999999999999999998664
No 158
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.69 E-value=0.006 Score=52.79 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+.|+|+|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999988664
No 159
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.66 E-value=0.032 Score=64.66 Aligned_cols=87 Identities=20% Similarity=0.184 Sum_probs=61.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG-----LNENEFQRAERLH 252 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 252 (486)
...++.|.|++|+||||||.+++...... -..++|++....++.. .++.++.+.. .+.+.++....+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 34689999999999999999999887643 2468899888777654 2566665432 2445666666665
Q ss_pred HHHhcCCcEEEEEeCCCCc
Q 042728 253 ERLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 253 ~~L~~~kr~LlVlDdv~~~ 271 (486)
......+.-+||+|.+...
T Consensus 455 ~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGC
T ss_pred HHHHhcCCcEEEECCHHHh
Confidence 5544445679999998643
No 160
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.66 E-value=0.0077 Score=51.08 Aligned_cols=27 Identities=15% Similarity=0.379 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
...+|+|.|+.|+||||+++.+.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988764
No 161
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.66 E-value=0.13 Score=50.37 Aligned_cols=88 Identities=20% Similarity=0.203 Sum_probs=48.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHH--HHHHHHHHHhCCCC---CCCCCHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHH--KIQNKLAFDLGMEF---GLNENEFQRAERLH 252 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~---~~~~~~~~~~~~l~ 252 (486)
...++.|+|++|+||||++..++...... -..+..+... .+... +.+.......+.+. ....+.........
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D-~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l 173 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeecc-ccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHH
Confidence 35689999999999999999999887654 2344555542 22222 22344455555431 11234444434444
Q ss_pred HHHhcCCcEEEEEeCC
Q 042728 253 ERLKKEKQLLIILDNI 268 (486)
Q Consensus 253 ~~L~~~kr~LlVlDdv 268 (486)
+.+....-=++|+|-.
T Consensus 174 ~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 174 EKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHHCCCCEEEEcCC
Confidence 4442112126666754
No 162
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.65 E-value=0.0088 Score=51.69 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
....|+|+|++|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999876
No 163
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.64 E-value=0.007 Score=55.38 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.+|.|.|++|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998775
No 164
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.64 E-value=0.0076 Score=51.50 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..+|+|+|++|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 165
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.64 E-value=0.0076 Score=52.81 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998764
No 166
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.64 E-value=0.0067 Score=53.25 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998653
No 167
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.63 E-value=0.0083 Score=52.19 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...+|+|.|++|+||||+++.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998765
No 168
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.62 E-value=0.041 Score=49.67 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=32.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKL 230 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (486)
-.++.|.|.+|+|||++|.+++.+...+ .-..++|++... +...+...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccC--CHHHHHHHH
Confidence 3689999999999999999987554322 134566766543 344444443
No 169
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.60 E-value=0.0067 Score=52.32 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
++|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988753
No 170
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.59 E-value=0.0065 Score=52.65 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999987754
No 171
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.59 E-value=0.0085 Score=51.53 Aligned_cols=25 Identities=40% Similarity=0.591 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
.++|+|+.|+|||||++.++.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999987753
No 172
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.56 E-value=0.0085 Score=52.03 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..+|+|.|++|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 173
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.56 E-value=0.013 Score=54.56 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
No 174
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.53 E-value=0.074 Score=53.83 Aligned_cols=50 Identities=24% Similarity=0.169 Sum_probs=36.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLA 231 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (486)
-.++.|.|.+|+||||||.+++.....+ +=..++|++... +..++...++
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~ 291 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLI 291 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHH
Confidence 3578999999999999999999887643 123578887644 3455555543
No 175
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.53 E-value=0.0086 Score=53.54 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.+|+|+|++|+||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 176
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.51 E-value=0.017 Score=52.41 Aligned_cols=27 Identities=22% Similarity=0.083 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.....|+|.|++|+||||+|+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 355689999999999999999998765
No 177
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.51 E-value=0.043 Score=54.45 Aligned_cols=91 Identities=21% Similarity=0.299 Sum_probs=60.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------C------CCCCCH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAFDLGME-------F------GLNENE 244 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~------~~~~~~ 244 (486)
-..++|.|.+|+|||+|+.++.+..... +-+.++++-+.+.. ...++.+++...=... . ..+.+.
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~ 243 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 243 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTT-CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCH
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhh-CCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCH
Confidence 3558999999999999999999876432 45778888888776 5566777776542221 0 111222
Q ss_pred ------HHHHHHHHHHHhc--CCcEEEEEeCCCC
Q 042728 245 ------FQRAERLHERLKK--EKQLLIILDNIWT 270 (486)
Q Consensus 245 ------~~~~~~l~~~L~~--~kr~LlVlDdv~~ 270 (486)
....-.+-+++.. ++.+||++||+-.
T Consensus 244 ~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 244 GARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp HHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1223445566654 6899999999854
No 178
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.50 E-value=0.01 Score=51.70 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..++++|+|++|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998664
No 179
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.49 E-value=0.0082 Score=51.08 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.+|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988753
No 180
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.49 E-value=0.0095 Score=52.33 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..+++|+|++|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998654
No 181
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.49 E-value=0.0096 Score=51.93 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
..+|+|.|++|+||||+|+.+.....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999988763
No 182
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.48 E-value=0.0082 Score=52.62 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
+.++|+|+.|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999987653
No 183
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.47 E-value=0.0042 Score=59.80 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=60.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKK 257 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 257 (486)
...+++|+|+.|+|||||.+.+........ -..++.+.-.-.+..... ..+..+... ..........+...|..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~-~~~i~t~ed~~e~~~~~~-~~~v~q~~~----~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTK-YHHILTIEDPIEFVHESK-KCLVNQREV----HRDTLGFSEALRSALRE 195 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHC-CCEEEEEESSCCSCCCCS-SSEEEEEEB----TTTBSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCC-CcEEEEccCcHHhhhhcc-ccceeeeee----ccccCCHHHHHHHHhhh
Confidence 345899999999999999999987765430 112222221111100000 000000000 00111233466677774
Q ss_pred CCcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeCchhhh
Q 042728 258 EKQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDLL 308 (486)
Q Consensus 258 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 308 (486)
.+=+|++|++.+.+.+..+... ...|..||+|+.....+
T Consensus 196 -~PdvillDEp~d~e~~~~~~~~-----------~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 -DPDIILVGEMRDLETIRLALTA-----------AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp -CCSEEEESCCCSHHHHHHHHHH-----------HHTTCEEEEEESCSSHH
T ss_pred -CcCEEecCCCCCHHHHHHHHHH-----------HhcCCEEEEEEccChHH
Confidence 6778899999876554443211 22366799999887654
No 184
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.47 E-value=0.034 Score=48.17 Aligned_cols=124 Identities=18% Similarity=0.149 Sum_probs=62.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC---CCCHHHHHHHHH---HHhCCCCCC-CCC-------H
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ---TPDHHKIQNKLA---FDLGMEFGL-NEN-------E 244 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~---~~~~~~~~~~i~---~~l~~~~~~-~~~-------~ 244 (486)
...|.|++..|.||||+|--..-+.... =..+.++..-. ......++..+. .+.+..... ..+ .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~--G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH--GKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT--TCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 3567777788899999999988777654 23456664433 233344444331 000110000 001 1
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeCchhh
Q 042728 245 FQRAERLHERLKKEKQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDL 307 (486)
Q Consensus 245 ~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 307 (486)
......+.+.+..++-=|||||++-....+..+ +...++..+. .......||+|+|...-
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l--~~~ev~~~l~-~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYL--PLEEVISALN-ARPGHQTVIITGRGCHR 165 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSS--CHHHHHHHHH-TSCTTCEEEEECSSCCH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCC--CHHHHHHHHH-hCcCCCEEEEECCCCcH
Confidence 122344455555445459999998432111111 0011111111 13446779999999753
No 185
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.46 E-value=0.0083 Score=52.00 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAK 201 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~ 201 (486)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 186
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.43 E-value=0.011 Score=52.29 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
...+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446899999999999999999987754
No 187
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.43 E-value=0.011 Score=51.95 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...+|+|.|++|+||||+++.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998663
No 188
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.41 E-value=0.0099 Score=52.03 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=22.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
....+|+|+|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999999864
No 189
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.41 E-value=0.01 Score=51.19 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..|+|.|++|+||||+++.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998765
No 190
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.41 E-value=0.011 Score=52.49 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..++|.|.|++|+||||.|+.+.+..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999775
No 191
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.40 E-value=0.012 Score=51.53 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
....|.|.|++|+||||+|+.+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998775
No 192
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.40 E-value=0.011 Score=52.20 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
.+|+|.|++|+||||+++.+......
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 57999999999999999999988754
No 193
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.39 E-value=0.011 Score=53.73 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...+|+|+|++|+|||||++.+.+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999765
No 194
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.38 E-value=0.21 Score=60.59 Aligned_cols=79 Identities=15% Similarity=0.152 Sum_probs=47.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCcE
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEKQL 261 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~kr~ 261 (486)
|.++|++|+|||+++..+..... .+ ..+.++.|...+...++..+-..+......... .+......+|+.
T Consensus 1307 vLL~GptGtGKT~li~~~L~~l~---~~-~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G------~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1307 LILCGPPGSGKTMTLTSTLRAFP---DF-EVVSLNFSSATTPELLLKTFDHHCEYKRTPSGE------TVLRPTQLGKWL 1376 (3245)
T ss_dssp CEEESSTTSSHHHHHHHHGGGCT---TE-EEEEECCCTTCCHHHHHHHHHHHEEEEECTTSC------EEEEESSTTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCC---CC-ceEEEEeeCCCCHHHHHHHHhhcceEEeccCCC------cccCCCcCCceE
Confidence 67999999999999877664331 12 356788888888888777775544211100000 000000015788
Q ss_pred EEEEeCCCC
Q 042728 262 LIILDNIWT 270 (486)
Q Consensus 262 LlVlDdv~~ 270 (486)
++++||+.-
T Consensus 1377 VlFiDDiNm 1385 (3245)
T 3vkg_A 1377 VVFCDEINL 1385 (3245)
T ss_dssp EEEETTTTC
T ss_pred EEEecccCC
Confidence 999999963
No 195
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.34 E-value=0.051 Score=62.17 Aligned_cols=86 Identities=20% Similarity=0.183 Sum_probs=66.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFG-----LNENEFQRAERLHE 253 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 253 (486)
-++|-|+|+.|+||||||.++....... =...+|+...+..++.- ++.+|.+.+ .+.+-++....+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 3789999999999999999998766544 46788998888877753 778877654 35666777777777
Q ss_pred HHhcCCcEEEEEeCCCCc
Q 042728 254 RLKKEKQLLIILDNIWTK 271 (486)
Q Consensus 254 ~L~~~kr~LlVlDdv~~~ 271 (486)
.++.+..-++|+|-|-..
T Consensus 1504 ~~~s~~~~~vvvDsv~al 1521 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVAAL 1521 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHcCCCCEEEEccHHhC
Confidence 777777789999998543
No 196
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.33 E-value=0.012 Score=52.38 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...|.|.|++|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998765
No 197
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.33 E-value=0.035 Score=48.16 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
.|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988754
No 198
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.32 E-value=0.01 Score=52.17 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAK 201 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~ 201 (486)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999986
No 199
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.32 E-value=0.011 Score=51.08 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..+|+|.|++|+||||+++.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998765
No 200
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.31 E-value=0.013 Score=51.68 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=26.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCe
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDK 211 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 211 (486)
..+|+|.|+.|+||||+++.+.+..... +++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999887543 3444
No 201
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.30 E-value=0.043 Score=54.84 Aligned_cols=44 Identities=25% Similarity=0.511 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 162 SRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 162 gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
+....+..+.+.+.++. +.+.|.|.+|+||||++..+.......
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 45566677777776544 489999999999999999999888665
No 202
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.29 E-value=0.0082 Score=51.22 Aligned_cols=21 Identities=33% Similarity=0.571 Sum_probs=18.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQV 199 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v 199 (486)
..+++|+|++|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999963
No 203
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.29 E-value=0.014 Score=51.56 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=26.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCe
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDK 211 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 211 (486)
...+|+|.|+.|+||||+++.+.+..... +++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~-~~~v 40 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA-GHRA 40 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 34689999999999999999999887543 3443
No 204
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.27 E-value=0.028 Score=53.05 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=32.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ 219 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 219 (486)
++.++|+|.|-|||||||.+..+..-+... =..+.-+.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~--GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 467899999999999999999999888765 23567777654
No 205
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.27 E-value=0.0079 Score=51.73 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=18.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..+|.|.|++|+||||+|+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999998764
No 206
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.26 E-value=0.013 Score=60.98 Aligned_cols=49 Identities=14% Similarity=0.149 Sum_probs=40.3
Q ss_pred ccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 154 VKDFEAFDSRMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 154 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
+.....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++....
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 334567899999998888887665 4689999999999999999997653
No 207
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.25 E-value=0.082 Score=49.85 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.+.+|+|.|++|+|||||++.+.....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445899999999999999999887664
No 208
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.25 E-value=0.013 Score=49.65 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.|.|.|++|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988753
No 209
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.24 E-value=0.013 Score=50.88 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
+|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987743
No 210
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.24 E-value=0.012 Score=54.09 Aligned_cols=27 Identities=37% Similarity=0.581 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
..+|.|.|++|+||||+|+.+......
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~ 30 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSK 30 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 467999999999999999999987643
No 211
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.21 E-value=0.011 Score=52.19 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
-.+++|+|+.|+|||||++.+....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998765
No 212
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.18 E-value=0.013 Score=52.24 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
...|.|.|++|+||||+++.+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999988763
No 213
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.16 E-value=0.016 Score=52.83 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999998764
No 214
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.13 E-value=0.013 Score=51.61 Aligned_cols=24 Identities=42% Similarity=0.656 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
..+|+|+|++|+||||+++.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998754
No 215
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.10 E-value=0.024 Score=53.16 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
...+++|+|++|+||||+++.++.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4578999999999999999999987754
No 216
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.10 E-value=0.011 Score=52.64 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3579999999999999999998754
No 217
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.10 E-value=0.021 Score=49.85 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=28.7
Q ss_pred HHHHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 166 VFQDVMEALRD-DKLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 166 ~~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
-+..|..++.. +....+.|+|++|+||||+|..+++...
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34555555543 2234799999999999999999998874
No 218
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.09 E-value=0.014 Score=51.69 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 219
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.08 E-value=0.016 Score=57.14 Aligned_cols=48 Identities=29% Similarity=0.250 Sum_probs=36.7
Q ss_pred ccccccHHHHHHHHHHHhcc--------------CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 157 FEAFDSRMKVFQDVMEALRD--------------DKLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 157 ~~~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
...++|.++.++.|...+.. ...+-|.++|++|+||||+|+.++....
T Consensus 14 d~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34578888888877666521 1345688999999999999999998763
No 220
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.06 E-value=0.013 Score=49.86 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
++++|+|.+|+|||||++.+.......
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 579999999999999999999887654
No 221
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.06 E-value=0.012 Score=51.66 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAK 201 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~ 201 (486)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
No 222
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.05 E-value=0.014 Score=52.17 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...|.|.|++|+||||+++.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998764
No 223
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.05 E-value=0.0084 Score=53.02 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
+|+|.|+.|+||||+++.+......
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988753
No 224
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.05 E-value=0.037 Score=52.04 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=33.3
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC
Q 042728 176 DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP 221 (486)
Q Consensus 176 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 221 (486)
....++|+|+|-||+||||+|..++...... =..++-+......
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D~~~ 81 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDPKH 81 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESSSC
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHC--CCeEEEEeCCCCC
Confidence 3467889999999999999999999888765 2356777765443
No 225
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.04 E-value=0.015 Score=53.11 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
....+|+|.|++|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3556899999999999999999987653
No 226
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.98 E-value=0.015 Score=53.09 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...+|+|+|+.|+||||+++.+....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999999765
No 227
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.95 E-value=0.015 Score=51.79 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.-.+++|+|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999987653
No 228
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.94 E-value=0.018 Score=54.27 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=29.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeC
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVT 218 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs 218 (486)
....+++|+|+.|+|||||++.+..-......-..+.++.-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd 129 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD 129 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence 345689999999999999999998776532111235555543
No 229
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.94 E-value=0.016 Score=50.39 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.-.+|+|+|+.|+||||+++.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998763
No 230
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.91 E-value=0.023 Score=50.21 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=24.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
....+|.|.|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456899999999999999999998775
No 231
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.90 E-value=0.035 Score=47.39 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=24.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
.++++|+|++|+|||||+..+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999987654
No 232
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.89 E-value=0.019 Score=52.05 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998765
No 233
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.83 E-value=0.017 Score=51.12 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998653
No 234
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.83 E-value=0.018 Score=48.39 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.-.+++|+|+.|+|||||++.++...
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44689999999999999999998776
No 235
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.81 E-value=0.019 Score=50.27 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998764
No 236
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.81 E-value=0.041 Score=52.94 Aligned_cols=40 Identities=25% Similarity=0.500 Sum_probs=30.2
Q ss_pred HHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 167 FQDVMEALR--DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 167 ~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
...+.+.+. .++..+|+|+|.+|+|||||+..+.......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 444444443 3467799999999999999999998876543
No 237
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.80 E-value=0.018 Score=49.95 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
+++|+|+.|+|||||++.++....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 589999999999999999998765
No 238
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.76 E-value=0.021 Score=51.21 Aligned_cols=25 Identities=24% Similarity=0.558 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..+|.|.|++|+||||+++.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998776
No 239
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.74 E-value=0.018 Score=52.44 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
..|+|+|++|+||||+++.+.....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5699999999999999999998763
No 240
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.71 E-value=0.021 Score=50.03 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
++|+|.|+.|+||||+++.+.....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3799999999999999999987653
No 241
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.70 E-value=0.023 Score=48.63 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
..+|+|.|+.|+||||+++.+......
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 457899999999999999999987644
No 242
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.68 E-value=0.022 Score=50.18 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+|.|.|++|+||||.|+.+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999775
No 243
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.66 E-value=0.079 Score=50.04 Aligned_cols=39 Identities=36% Similarity=0.432 Sum_probs=29.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeC
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVT 218 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs 218 (486)
...+|.|+|++|+||||++..++...... -..+.++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 45689999999999999999999887654 2345555443
No 244
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.62 E-value=0.051 Score=51.99 Aligned_cols=53 Identities=28% Similarity=0.350 Sum_probs=36.8
Q ss_pred HhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHH
Q 042728 173 ALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHK 225 (486)
Q Consensus 173 ~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~ 225 (486)
.+.+...+++.+.|.||+||||+|..++........-..++-++.....+...
T Consensus 12 ~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~l~~ 64 (348)
T 3io3_A 12 IVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSD 64 (348)
T ss_dssp HHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCHHHH
T ss_pred HhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCChHH
Confidence 34455678999999999999999999998876211134566676665444433
No 245
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.60 E-value=0.078 Score=47.64 Aligned_cols=36 Identities=22% Similarity=0.447 Sum_probs=28.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEE
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMA 215 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 215 (486)
...|+|.|+.|+||||+++.+.+..... .+..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeee
Confidence 4689999999999999999999988754 45534443
No 246
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.56 E-value=0.077 Score=50.90 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=24.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
..+++|+|+.|+||||+++.++.....
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 468999999999999999999987764
No 247
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.55 E-value=0.022 Score=54.64 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=35.4
Q ss_pred HHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCC-eEEEEEeCCCC
Q 042728 169 DVMEALRD-DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFD-KVVMAEVTQTP 221 (486)
Q Consensus 169 ~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~vs~~~ 221 (486)
+.++.+.. ..-..++|+|.+|+|||+|+.++.+..... +-+ .++++-+.+..
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~-~~dv~~V~~lIGER~ 217 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAEN-HPDTIRIILLIDERP 217 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHH-CTTSEEEEEECSCCH
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhc-CCCeEEEEEEeccCc
Confidence 45555543 334578999999999999999999887543 223 23566666543
No 248
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.54 E-value=0.043 Score=51.65 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
....+|+|+|+.|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999987654
No 249
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.54 E-value=0.1 Score=45.53 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=32.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAF 232 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (486)
.|+|=|.-|+||||.++.+.+.+..++ . .+++..-.......+..+.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g-~-~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG-K-KVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-C-CEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-C-cEEEEECCCCCcHHHHHHHHhh
Confidence 377889999999999999999987653 2 3344333333334444444443
No 250
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.51 E-value=0.024 Score=50.13 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.|+|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 251
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.50 E-value=0.023 Score=51.37 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.. .+++|+|+.|+|||||.+.++.-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 35 78999999999999999998754
No 252
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.49 E-value=0.025 Score=50.19 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAK 201 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~ 201 (486)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
No 253
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.48 E-value=0.029 Score=52.65 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
...+++|+|+.|+||||+++.++.....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999987764
No 254
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.48 E-value=0.014 Score=52.41 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=16.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH-HHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVA-KQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~-~~~ 203 (486)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 654
No 255
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.48 E-value=0.025 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.|.|.|++|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 256
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.47 E-value=0.078 Score=52.17 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=23.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456789999999999999999987643
No 257
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.47 E-value=0.025 Score=50.20 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..|.|.|++|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 258
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.44 E-value=0.03 Score=50.29 Aligned_cols=26 Identities=27% Similarity=0.177 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
...|.|.|++|+||||+|+.+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998763
No 259
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.38 E-value=0.02 Score=51.68 Aligned_cols=24 Identities=21% Similarity=0.445 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAK 201 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~ 201 (486)
.-.+++|+|+.|+|||||.+.+..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346799999999999999999864
No 260
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.37 E-value=0.025 Score=52.51 Aligned_cols=23 Identities=26% Similarity=0.739 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVA 200 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~ 200 (486)
...+|+|.|++|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 261
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.37 E-value=0.094 Score=46.31 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=33.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAF 232 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (486)
..|+|-|..|+||||+++.+.+..... .+..+.+..-.......+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999988765 3433333322222223344444443
No 262
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.34 E-value=0.063 Score=51.07 Aligned_cols=50 Identities=30% Similarity=0.327 Sum_probs=36.7
Q ss_pred hccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHH
Q 042728 174 LRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHK 225 (486)
Q Consensus 174 L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~ 225 (486)
+.+...+++.+.|-||+||||+|..++...... -..++-++.....+...
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D~~~~l~~ 60 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPAHNLSD 60 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECCSSCHHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECCCCCChhH
Confidence 445556888999999999999999999888654 34567777665544433
No 263
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.33 E-value=0.02 Score=51.17 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.+++|+|+.|+|||||.+.++.-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998743
No 264
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.32 E-value=0.083 Score=46.99 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=25.7
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 176 DDKLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 176 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
......|+|.|..|+||||+++.+.+....
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345678999999999999999999998876
No 265
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.26 E-value=0.027 Score=53.46 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.+|+|.|+.|+||||||..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999998764
No 266
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.25 E-value=0.091 Score=52.37 Aligned_cols=42 Identities=33% Similarity=0.406 Sum_probs=30.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCC
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPD 222 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~ 222 (486)
...+++|+|..|+|||||++.++...... .+.+++.-...+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 34689999999999999999999877543 3344444333333
No 267
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.23 E-value=0.078 Score=48.50 Aligned_cols=110 Identities=14% Similarity=0.148 Sum_probs=56.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEE-EeCCCCCHHHHHHHHHH--HhCCCCCCCCCHHHHHHHHHH
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMA-EVTQTPDHHKIQNKLAF--DLGMEFGLNENEFQRAERLHE 253 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv-~vs~~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~ 253 (486)
..-.+++|+|+.|+|||||++.+....... +.+.+++ ...-.+-.... ..+.. .++.. . ......+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl~---~---~~l~~~la~ 93 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGED---T---KSFADALRA 93 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEEBTTT---B---SCHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCc-ceeeeHHHhCCC---H---HHHHHHHHH
Confidence 344689999999999999999998766432 2233332 21100000000 00000 01111 1 122445666
Q ss_pred HHhcCCcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeCchhh
Q 042728 254 RLKKEKQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDL 307 (486)
Q Consensus 254 ~L~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 307 (486)
.|.. ++=+|++|+..+.+........ ...|..|++||.....
T Consensus 94 aL~~-~p~illlDEp~D~~~~~~~l~~-----------~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 94 ALRE-DPDVIFVGEMRDLETVETALRA-----------AETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHH-CCSEEEESCCCSHHHHHHHHHH-----------HHTTCEEEEEECCSSH
T ss_pred HHhh-CCCEEEeCCCCCHHHHHHHHHH-----------HccCCEEEEEeCcchH
Confidence 6664 4568888998754333222110 2236678888887654
No 268
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.21 E-value=0.028 Score=52.98 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
++|.|+|+.|+||||||..++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999998764
No 269
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.20 E-value=0.064 Score=48.02 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
....|+|.|++|+||||+++.+.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3467999999999999999999988764
No 270
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.18 E-value=0.021 Score=50.42 Aligned_cols=23 Identities=35% Similarity=0.304 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.+++|+|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999876
No 271
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.16 E-value=0.1 Score=46.33 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT 220 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 220 (486)
.|.+.|.||+||||++..++.....++ + .+..+.+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G-~-~V~v~d~D~q 45 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG-V-RVMAGVVETH 45 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT-C-CEEEEECCCT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC-C-CEEEEEeCCC
Confidence 478899999999999999998887652 3 3445555443
No 272
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.13 E-value=0.019 Score=53.51 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
...+|+|.|+.|+||||+|+.+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 273
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.12 E-value=0.024 Score=51.16 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997543
No 274
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.07 E-value=0.032 Score=52.11 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.++|+|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3578999999999999999998654
No 275
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.06 E-value=0.039 Score=50.40 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
...++.+.|.||+||||++..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 356788999999999999999998876
No 276
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.06 E-value=0.038 Score=51.55 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..++|+|.|+.|+||||||..+++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 34689999999999999999998763
No 277
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.05 E-value=0.054 Score=54.50 Aligned_cols=46 Identities=13% Similarity=0.030 Sum_probs=34.4
Q ss_pred cccHHHHHHHHHHHh--ccCCccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 160 FDSRMKVFQDVMEAL--RDDKLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 160 ~~gR~~~~~~l~~~L--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
-+.|.+..+.+.+.. ......+|.+.|++|+||||+|+.+...+..
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 444555566666655 2234578999999999999999999999863
No 278
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.02 E-value=0.031 Score=50.93 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.+++|+|+.|+|||||.+.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999863
No 279
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.00 E-value=0.025 Score=51.84 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.-.+++|+|+.|+|||||.+.++.-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998743
No 280
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.98 E-value=0.026 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAK 201 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~ 201 (486)
-.+++|+|+.|+|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 36799999999999999999864
No 281
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.97 E-value=0.033 Score=48.18 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
-.|+|+|.+|+|||||.+.+....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999988653
No 282
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.90 E-value=0.028 Score=50.83 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.+++|+|+.|+|||||.+.++.-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999998743
No 283
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.87 E-value=0.028 Score=51.68 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.+++|+|+.|+|||||++.+..-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 467999999999999999998743
No 284
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.86 E-value=0.033 Score=51.21 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.-.+++|+|+.|+|||||.+.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 285
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.86 E-value=0.034 Score=52.06 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999873
No 286
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.86 E-value=0.025 Score=50.11 Aligned_cols=23 Identities=39% Similarity=0.811 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.+++|+|+.|+|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998754
No 287
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.86 E-value=0.029 Score=51.36 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.+++|+|+.|+|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999998643
No 288
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.85 E-value=0.029 Score=50.97 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.+++|+|+.|+|||||.+.++.-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998644
No 289
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.84 E-value=0.029 Score=50.32 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
-.+++|+|+.|+|||||.+.++.-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999987543
No 290
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.83 E-value=0.029 Score=51.46 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.-.+++|+|+.|+|||||.+.++.-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3468999999999999999998744
No 291
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.81 E-value=0.036 Score=51.88 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+.-.+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344689999999999999999998776
No 292
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.79 E-value=0.032 Score=52.74 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.++|+|+|+.|+|||||+..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3589999999999999999998653
No 293
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.73 E-value=0.13 Score=45.46 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=26.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCe
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDK 211 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 211 (486)
...|+|-|+.|+||||+++.+.+..... .+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc
Confidence 3578999999999999999999888654 3444
No 294
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.71 E-value=0.031 Score=50.68 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.-.+++|+|+.|+|||||.+.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998743
No 295
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.67 E-value=0.032 Score=51.44 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.-.+++|+|+.|+|||||++.++.-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998743
No 296
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.66 E-value=0.059 Score=46.46 Aligned_cols=27 Identities=19% Similarity=0.047 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
.++.|+|+.|+||||++..++.+....
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~ 30 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG 30 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 578899999999999998887776544
No 297
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.66 E-value=0.033 Score=51.06 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999998743
No 298
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.65 E-value=0.054 Score=48.72 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 299
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.65 E-value=0.047 Score=50.54 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=30.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHcc--------CCCeEEEEEeCCC
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEEN--------LFDKVVMAEVTQT 220 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------~f~~~~wv~vs~~ 220 (486)
-.++.|+|++|+|||||+.+++....... .-..++|++....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 36799999999999999999987654310 0235677776554
No 300
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.64 E-value=0.033 Score=50.88 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.-.+++|+|+.|+|||||.+.++.-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998743
No 301
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.64 E-value=0.039 Score=48.05 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.|+|+|.+|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45889999999999999999864
No 302
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.61 E-value=0.042 Score=46.19 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAK 201 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~ 201 (486)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999874
No 303
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.57 E-value=0.034 Score=50.50 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.+++|+|+.|+|||||.+.++.-
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 357999999999999999998743
No 304
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.52 E-value=0.037 Score=47.48 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAK 201 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~ 201 (486)
-|+|+|.+|+|||||.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999875
No 305
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.52 E-value=0.048 Score=45.24 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
+.|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999998754
No 306
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.50 E-value=0.092 Score=45.14 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999998754
No 307
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.50 E-value=0.092 Score=48.11 Aligned_cols=39 Identities=15% Similarity=0.349 Sum_probs=30.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT 220 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 220 (486)
++|+|.|-||+||||+|..++.....+ -..++-+.....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~--G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM--GKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC--CCcEEEEcCCCC
Confidence 578889999999999999999888754 235667766543
No 308
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.46 E-value=0.036 Score=50.92 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.+++|+|+.|+|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 457999999999999999998743
No 309
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.45 E-value=0.036 Score=51.29 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.+++|+|+.|+|||||.+.++.-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 357999999999999999998744
No 310
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.43 E-value=0.044 Score=50.45 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998765
No 311
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.42 E-value=0.037 Score=50.47 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
-.+++|+|+.|+|||||.+.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999987543
No 312
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.38 E-value=0.25 Score=49.13 Aligned_cols=91 Identities=16% Similarity=0.153 Sum_probs=54.2
Q ss_pred cEEEEEcCCCCcHHHHH-HHHHHHHhH----ccCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCC------CCCCCCHHH
Q 042728 180 NIIGVHGMGGVGKTTIV-KQVAKQVME----ENLFD-KVVMAEVTQTP-DHHKIQNKLAFDLGME------FGLNENEFQ 246 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa-~~v~~~~~~----~~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~ 246 (486)
..++|.|.+|+|||+|| ..+.+.... .++.+ .++++-+.+.. .+.++.+.+...=... ...+.+...
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~ 242 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPL 242 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHH
Confidence 45889999999999995 566666643 12344 46788888766 4556666665421111 111222221
Q ss_pred H------HHHHHHHHh-cCCcEEEEEeCCCC
Q 042728 247 R------AERLHERLK-KEKQLLIILDNIWT 270 (486)
Q Consensus 247 ~------~~~l~~~L~-~~kr~LlVlDdv~~ 270 (486)
. ...+-+++. .++..||++||+-.
T Consensus 243 r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 243 QYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 1 123444444 36899999999854
No 313
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.38 E-value=0.11 Score=48.19 Aligned_cols=39 Identities=23% Similarity=0.384 Sum_probs=30.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT 220 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 220 (486)
++|+|.|-||+||||+|..++...... -..++-+.....
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~--G~rVlliD~D~q 41 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEM--GKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEECSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence 678889999999999999999888754 235666766543
No 314
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.33 E-value=0.044 Score=52.49 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.+++|+|+.|+|||||.+.++--
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 367999999999999999999854
No 315
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.32 E-value=0.039 Score=54.47 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=28.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEe
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEV 217 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v 217 (486)
+.+|.|+|.+|+||||++..++.....++ ..++.++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G--~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRG--LKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHH--CCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEec
Confidence 46899999999999999999998776442 23455544
No 316
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.31 E-value=0.12 Score=50.65 Aligned_cols=91 Identities=20% Similarity=0.200 Sum_probs=55.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHc-cCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCC------CCCCCCHHHH---
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEE-NLFD-KVVMAEVTQTP-DHHKIQNKLAFDLGME------FGLNENEFQR--- 247 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~~--- 247 (486)
..++|.|.+|+|||+|+.++++..... ++-+ .++++-+.+.. .+.++.+++...=... ...+.+....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 447899999999999999988775431 1111 56777777654 5566666655431111 0112222221
Q ss_pred ---HHHHHHHHh--cCCcEEEEEeCCCC
Q 042728 248 ---AERLHERLK--KEKQLLIILDNIWT 270 (486)
Q Consensus 248 ---~~~l~~~L~--~~kr~LlVlDdv~~ 270 (486)
...+-+++. .++.+||++||+-.
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 234556666 27899999999854
No 317
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.31 E-value=0.055 Score=52.42 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
++|+|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999997753
No 318
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.30 E-value=0.099 Score=47.67 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=29.3
Q ss_pred HHHHHHHHHhccC--CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 165 KVFQDVMEALRDD--KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 165 ~~~~~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.....+..++... ....+.++|++|+|||.+|..+++.
T Consensus 88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3445577777553 2457999999999999999999875
No 319
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.28 E-value=0.035 Score=48.15 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.+.|.|.|++|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3568899999999999999998653
No 320
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.27 E-value=0.097 Score=47.21 Aligned_cols=42 Identities=29% Similarity=0.421 Sum_probs=32.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHH
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHK 225 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~ 225 (486)
|+|.|-||+||||+|..++......+ ..++-+......+...
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l~~ 44 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCLGQ 44 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcChHH
Confidence 66799999999999999999887653 4677777766555443
No 321
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.25 E-value=0.056 Score=52.27 Aligned_cols=27 Identities=22% Similarity=0.133 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+...+++|+|++|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345689999999999999999999754
No 322
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.23 E-value=0.051 Score=45.15 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998754
No 323
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.21 E-value=0.19 Score=50.42 Aligned_cols=90 Identities=17% Similarity=0.123 Sum_probs=54.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCC-HHHHHHHHHH----HhCC---------CCCCCCC
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPD-HHKIQNKLAF----DLGM---------EFGLNEN 243 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~----~l~~---------~~~~~~~ 243 (486)
.-..++|.|..|+|||+|+.++++.. +-+.++++-+.+... ..++++++-+ ..+. ....+..
T Consensus 226 kGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd~p 301 (588)
T 3mfy_A 226 KGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMP 301 (588)
T ss_dssp TTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEEEEECCTTSC
T ss_pred cCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceEEEEECCCCC
Confidence 33568999999999999999987652 346788888887764 4455555422 1110 0011222
Q ss_pred HHHH------HHHHHHHHh-cCCcEEEEEeCCCCc
Q 042728 244 EFQR------AERLHERLK-KEKQLLIILDNIWTK 271 (486)
Q Consensus 244 ~~~~------~~~l~~~L~-~~kr~LlVlDdv~~~ 271 (486)
.... .-.+-+++. .++.+||++|++-..
T Consensus 302 ~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR~ 336 (588)
T 3mfy_A 302 VAAREASIYTGITIAEYFRDMGYDVALMADSTSRW 336 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHHH
Confidence 2221 122334443 368899999999643
No 324
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.18 E-value=0.055 Score=47.29 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=20.6
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 176 DDKLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 176 ~~~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
....-.|+|+|.+|+|||||...+.+.
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 344456889999999999999888754
No 325
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.14 E-value=0.054 Score=45.25 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.|.|+|.+|+|||||...+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999998764
No 326
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.10 E-value=0.21 Score=50.76 Aligned_cols=84 Identities=15% Similarity=0.286 Sum_probs=47.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC---------------CCCCCC
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGME---------------FGLNEN 243 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~---------------~~~~~~ 243 (486)
-.++.|.|++|+|||||++.++...... -..++++..... ...+...+ ..++.. .+...+
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~--G~~vi~~~~ee~--~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~LS 355 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACAN--KERAILFAYEES--RAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESAG 355 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEESSSC--HHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEEEeCC--HHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccCC
Confidence 4689999999999999999999776543 123455544332 33333322 112211 001124
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeC
Q 042728 244 EFQRAERLHERLKKEKQLLIILDN 267 (486)
Q Consensus 244 ~~~~~~~l~~~L~~~kr~LlVlDd 267 (486)
..+.+..+.......++-+||+|-
T Consensus 356 ~g~~q~~~~a~~l~~~p~llilDp 379 (525)
T 1tf7_A 356 LEDHLQIIKSEINDFKPARIAIDS 379 (525)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcC
Confidence 455555444444334667899994
No 327
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.09 E-value=0.062 Score=48.45 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...|+|.|..|+||||+++.+.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998875
No 328
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.05 E-value=0.087 Score=53.67 Aligned_cols=45 Identities=24% Similarity=0.380 Sum_probs=30.8
Q ss_pred ccHHHHHHHHHHHh--ccCCccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 161 DSRMKVFQDVMEAL--RDDKLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 161 ~gR~~~~~~l~~~L--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
+.+.+....+.... .-....+++|+|+.|+|||||++.++.....
T Consensus 349 f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 349 YSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp TSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 33444444444433 1123468999999999999999999988753
No 329
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.03 E-value=0.3 Score=47.18 Aligned_cols=62 Identities=19% Similarity=0.314 Sum_probs=42.4
Q ss_pred cccHHHHHHHHHHHh------------ccCCccEEEEEc-CCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCH
Q 042728 160 FDSRMKVFQDVMEAL------------RDDKLNIIGVHG-MGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDH 223 (486)
Q Consensus 160 ~~gR~~~~~~l~~~L------------~~~~~~vi~I~G-~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~ 223 (486)
+..-+..+.++.+.. .....++|+|+| -||+||||+|..++.....+ -..++.++..+..+.
T Consensus 112 yq~~~~i~~ei~~~~~e~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~--g~rVlliD~D~~~~l 186 (373)
T 3fkq_A 112 YQRVDVIFKQILGVYSDMAANVATISGENDKSSVVIFTSPCGGVGTSTVAAACAIAHANM--GKKVFYLNIEQCGTT 186 (373)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCCCCCCTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHH--TCCEEEEECCTTCCH
T ss_pred cCCHHHHHHHHHHHHhhcccccccccccCCCceEEEEECCCCCChHHHHHHHHHHHHHhC--CCCEEEEECCCCCCH
Confidence 334556666666554 123467888885 99999999999999887664 345778887644343
No 330
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.02 E-value=0.1 Score=51.56 Aligned_cols=91 Identities=19% Similarity=0.171 Sum_probs=56.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccC--CCeEEEEEeCCCC-CHHHHHHHHHHHhCCC------CCCCCCHHH----
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENL--FDKVVMAEVTQTP-DHHKIQNKLAFDLGME------FGLNENEFQ---- 246 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~---- 246 (486)
..++|.|.+|+|||+|+.+++++....+. -+.++++-+.+.. ...++.+++...=... ...+.+...
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 45788999999999999999987653211 1356777777665 5566666666531111 011222221
Q ss_pred --HHHHHHHHHh--cCCcEEEEEeCCCC
Q 042728 247 --RAERLHERLK--KEKQLLIILDNIWT 270 (486)
Q Consensus 247 --~~~~l~~~L~--~~kr~LlVlDdv~~ 270 (486)
..-.+-+++. .++.+||++||+-.
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 1233455555 37899999999743
No 331
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.01 E-value=0.14 Score=44.66 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=32.5
Q ss_pred cEEEEE-cCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHH
Q 042728 180 NIIGVH-GMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHK 225 (486)
Q Consensus 180 ~vi~I~-G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~ 225 (486)
++|+|+ +-||+||||+|..++.....+ -..++.+......+...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~--g~~vlliD~D~~~~~~~ 46 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRS--GYNIAVVDTDPQMSLTN 46 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEECCCCCCHHH
Confidence 467777 789999999999999888764 23577777765544433
No 332
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.00 E-value=0.047 Score=50.02 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.+++|+|+.|+|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999998754
No 333
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.99 E-value=0.055 Score=51.80 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.+++|+|+.|+|||||.+.++--
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 367999999999999999999754
No 334
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.93 E-value=0.17 Score=44.44 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=32.2
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHH
Q 042728 181 IIGVH-GMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKI 226 (486)
Q Consensus 181 vi~I~-G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~ 226 (486)
+|+|+ +-||+||||+|..++......+ .++-+......+....
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~~~ 45 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSATGW 45 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHHHH
Confidence 45564 7899999999999998887652 6778887766544433
No 335
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.91 E-value=0.061 Score=46.07 Aligned_cols=23 Identities=30% Similarity=0.409 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999753
No 336
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.91 E-value=0.038 Score=51.86 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.-.+++|+|+.|+|||||++.+..-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 3468999999999999999998643
No 337
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=92.88 E-value=0.2 Score=48.11 Aligned_cols=48 Identities=25% Similarity=0.285 Sum_probs=33.6
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHh--HccCCCeEEEEEeCCCCCHHH
Q 042728 176 DDKLNIIGVHGMGGVGKTTIVKQVAKQVM--EENLFDKVVMAEVTQTPDHHK 225 (486)
Q Consensus 176 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~--~~~~f~~~~wv~vs~~~~~~~ 225 (486)
+....++...|-||+||||+|..++.... .. =..++-++.....+...
T Consensus 15 ~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~--G~rVLLvD~D~~~~l~~ 64 (354)
T 2woj_A 15 STTHKWIFVGGKGGVGKTTSSCSIAIQMALSQP--NKQFLLISTDPAHNLSD 64 (354)
T ss_dssp CSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCSSCCHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCCCCCHHH
Confidence 34456677779999999999999998887 43 23566666655455443
No 338
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.88 E-value=0.056 Score=52.18 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
-.+++|+|+.|+|||||.+.++--.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3679999999999999999998543
No 339
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.84 E-value=0.06 Score=51.67 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.-.+++|+|+.|+|||||.+.++--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 3467999999999999999999854
No 340
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.82 E-value=0.071 Score=45.59 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.+.+|+|+.|+|||||+..++.-.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999987654
No 341
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.82 E-value=0.068 Score=44.48 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~ 202 (486)
|+|+|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998764
No 342
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.80 E-value=0.078 Score=46.72 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
....|.|+|.+|+|||||+..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999988653
No 343
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.80 E-value=0.063 Score=46.10 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999999854
No 344
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.80 E-value=0.059 Score=51.69 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 3468999999999999999998743
No 345
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.79 E-value=0.06 Score=51.70 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.-.+++|+|+.|+|||||.+.++--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 3467999999999999999999754
No 346
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.79 E-value=0.12 Score=44.24 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=24.7
Q ss_pred HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 169 DVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 169 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.+.+++ ......|+|+|.+|+|||||...+...
T Consensus 7 ~~~~~~-~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 7 RIWRLF-NHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHH-TTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHhc-CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 444433 344567889999999999999998743
No 347
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.79 E-value=0.065 Score=44.63 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.-|+|+|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999998864
No 348
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.76 E-value=0.19 Score=47.72 Aligned_cols=44 Identities=32% Similarity=0.347 Sum_probs=32.0
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC
Q 042728 176 DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP 221 (486)
Q Consensus 176 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~ 221 (486)
++...++.+.|-||+||||+|..++...... -..+.-++.....
T Consensus 16 ~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~--G~rVllvD~D~~~ 59 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSKV--RSSVLLISTDPAH 59 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHHHTS--SSCEEEEECCTTC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHC--CCeEEEEECCCCc
Confidence 3445677788999999999999999888754 2346666655443
No 349
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.76 E-value=0.084 Score=45.08 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
....|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999988743
No 350
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.76 E-value=0.053 Score=50.45 Aligned_cols=26 Identities=23% Similarity=0.505 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999987543
No 351
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.75 E-value=0.052 Score=51.35 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
..++++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4678999999999999999998865
No 352
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.74 E-value=0.16 Score=48.70 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
...+|+|+|.+|+|||||...+......
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 3678999999999999999999876644
No 353
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.74 E-value=0.061 Score=45.29 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.|+|+|.+|+|||||...+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 45889999999999999988743
No 354
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.72 E-value=0.067 Score=44.51 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988754
No 355
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.68 E-value=0.064 Score=51.78 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.+++|+|+.|+|||||.+.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcC
Confidence 357999999999999999999854
No 356
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.68 E-value=0.063 Score=45.47 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999998754
No 357
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.66 E-value=0.069 Score=44.51 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998864
No 358
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.65 E-value=0.064 Score=51.71 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.-.+++|+|+.|+|||||.+.++--
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 3467999999999999999999743
No 359
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.65 E-value=0.1 Score=48.90 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=24.4
Q ss_pred HHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHH
Q 042728 167 FQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVA 200 (486)
Q Consensus 167 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~ 200 (486)
+++|.+.+. -.+++|+|++|+|||||.+.+.
T Consensus 156 i~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE---GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH
Confidence 345555543 3578999999999999999988
No 360
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.65 E-value=0.084 Score=44.59 Aligned_cols=25 Identities=20% Similarity=0.394 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999988643
No 361
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.63 E-value=0.03 Score=57.84 Aligned_cols=45 Identities=13% Similarity=0.148 Sum_probs=31.0
Q ss_pred ccccHHHHHHHHHHHhccCCcc-----------EEEEEcCCCCcHHHHHHHHHHHH
Q 042728 159 AFDSRMKVFQDVMEALRDDKLN-----------IIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 159 ~~~gR~~~~~~l~~~L~~~~~~-----------vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.++|.+.....+.-.+..+..+ -+.++|++|+|||+||+.+++..
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 3567776655554444333211 58899999999999999987654
No 362
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.62 E-value=0.07 Score=44.68 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999988754
No 363
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.60 E-value=0.069 Score=45.80 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
--|+|+|.+|+|||||+..+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999888754
No 364
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.58 E-value=0.32 Score=48.33 Aligned_cols=87 Identities=18% Similarity=0.167 Sum_probs=52.7
Q ss_pred cEEEEEcCCCCcHHHHHH-HHHHHHhHccCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCCC------CCCCCHHHH---
Q 042728 180 NIIGVHGMGGVGKTTIVK-QVAKQVMEENLFD-KVVMAEVTQTP-DHHKIQNKLAFDLGMEF------GLNENEFQR--- 247 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~-~v~~~~~~~~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~~--- 247 (486)
..++|.|.+|+|||+||. .+.+.. ..+ .++++-+.+.. ...++.+.+...=.... ..+.+....
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a 238 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA 238 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence 458899999999999964 666553 245 35777887765 45566666654321111 112222221
Q ss_pred ---HHHHHHHHh-cCCcEEEEEeCCCC
Q 042728 248 ---AERLHERLK-KEKQLLIILDNIWT 270 (486)
Q Consensus 248 ---~~~l~~~L~-~~kr~LlVlDdv~~ 270 (486)
...+-+++. .++..||++||+-.
T Consensus 239 ~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 239 PYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 123444444 36899999999854
No 365
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.55 E-value=0.073 Score=44.47 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
-|+|+|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987553
No 366
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.54 E-value=0.071 Score=45.58 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
--|+|+|.+|+|||||+..+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998764
No 367
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.54 E-value=0.18 Score=48.00 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=24.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
....+++|+|++|+|||||.+.+......
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 45678999999999999999999877654
No 368
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.49 E-value=0.074 Score=44.47 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.|+|+|.+|+|||||...+....
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999987653
No 369
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.49 E-value=0.07 Score=44.66 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVA 200 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~ 200 (486)
-|+|+|.+|+|||||...+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999885
No 370
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.48 E-value=0.054 Score=51.73 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.+++|+|+.|+|||||.+.++--
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCccHHHHHHHHHcC
Confidence 357999999999999999999754
No 371
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.48 E-value=0.05 Score=48.76 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
...+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999998764
No 372
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.48 E-value=0.066 Score=44.67 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVA 200 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~ 200 (486)
-|+|+|.+|+|||||...+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999885
No 373
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.47 E-value=0.078 Score=45.08 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=20.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHH
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVA 200 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~ 200 (486)
.....|+|+|.+|+|||||...+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 445678899999999999998775
No 374
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.47 E-value=0.2 Score=44.64 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHc
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 206 (486)
...|+|-|+.|+||||+++.+.+.....
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4579999999999999999999888653
No 375
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.46 E-value=0.2 Score=52.42 Aligned_cols=62 Identities=24% Similarity=0.307 Sum_probs=40.2
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042728 165 KVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLA 231 (486)
Q Consensus 165 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (486)
...+.+...|... .+..|+||+|.|||+.+.++......+ ...+.++...+..+..+...+.
T Consensus 193 ~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 193 SQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHH
Confidence 3344555555433 367899999999998776666555443 2356777766666666666654
No 376
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.43 E-value=0.084 Score=45.47 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998754
No 377
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.41 E-value=0.076 Score=44.82 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.-|+|+|.+|+|||||...+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999998754
No 378
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.39 E-value=0.077 Score=44.96 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999988754
No 379
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.38 E-value=0.078 Score=46.87 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.+|+|.|+.|+||||+++.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999987654
No 380
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.37 E-value=0.078 Score=44.32 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35789999999999999998743
No 381
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.33 E-value=0.078 Score=44.85 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
...|+|+|.+|+|||||...+...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998865
No 382
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.32 E-value=0.075 Score=44.48 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998753
No 383
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.31 E-value=0.082 Score=46.25 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.+|.|.|+.|+||||+++.+++.+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998864
No 384
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.30 E-value=0.092 Score=53.22 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
...+|.++|++|.||||+|+.+.....-
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4468999999999999999999987753
No 385
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.29 E-value=0.085 Score=45.61 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAK 201 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~ 201 (486)
--|+|+|.+|+|||||...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4588999999999999998874
No 386
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=92.28 E-value=0.23 Score=51.26 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=32.4
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC
Q 042728 176 DDKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ 219 (486)
Q Consensus 176 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 219 (486)
+...+++.+.|.||+||||+|..++...... -..++.|+...
T Consensus 5 ~~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~--G~rVLlvd~D~ 46 (589)
T 1ihu_A 5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQ--GKRVLLVSTDP 46 (589)
T ss_dssp SSCCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCT
T ss_pred CCCCEEEEEeCCCcCHHHHHHHHHHHHHHHC--CCcEEEEECCC
Confidence 3456788999999999999999999888765 23566666653
No 387
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.25 E-value=0.083 Score=44.09 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998764
No 388
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.25 E-value=0.081 Score=45.61 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
...|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999988753
No 389
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.24 E-value=0.2 Score=49.13 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=54.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHc--------cCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCC------CCCCCC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEE--------NLFD-KVVMAEVTQTP-DHHKIQNKLAFDLGME------FGLNEN 243 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~------~~~~~~ 243 (486)
..++|.|.+|+|||+|+.++++..... ++-+ .++++-+.+.. ...++.+++...=... ...+.+
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 457899999999999999988775431 1122 56777777655 4556666554421010 001111
Q ss_pred H-H-----HHHHHHHHHHh--cCCcEEEEEeCCCC
Q 042728 244 E-F-----QRAERLHERLK--KEKQLLIILDNIWT 270 (486)
Q Consensus 244 ~-~-----~~~~~l~~~L~--~~kr~LlVlDdv~~ 270 (486)
. . ...-.+-+++. .++.+||++||+-.
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 1 1 12234556666 27899999999854
No 390
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.22 E-value=0.25 Score=46.69 Aligned_cols=47 Identities=23% Similarity=0.243 Sum_probs=34.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQ 227 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 227 (486)
..++...|.||+||||+|..++...... -..++-|+.....+....+
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~D~~~~l~~~l 60 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARS--GKKTLVISTDPAHSLSDSL 60 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEECCSSCCHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHC--CCcEEEEeCCCCcCHHHHh
Confidence 3566777999999999999999888765 3356667766555554433
No 391
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.22 E-value=0.078 Score=51.47 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAK 201 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~ 201 (486)
.-.+++|+|+.|+|||||.+.++.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 346799999999999999999974
No 392
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.21 E-value=0.082 Score=45.39 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
--|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 45889999999999999988764
No 393
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.18 E-value=0.11 Score=50.86 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAK 201 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~ 201 (486)
...+++|+|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 445899999999999999999986
No 394
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.17 E-value=0.075 Score=51.31 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
...++|+|+.|+|||||++.+.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999987653
No 395
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.12 E-value=0.088 Score=44.08 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999998653
No 396
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.09 E-value=0.1 Score=44.75 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
....|+|+|.+|+|||||...+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34578999999999999999987553
No 397
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.09 E-value=0.089 Score=44.41 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...|.|+|.+|+|||||...+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468899999999999999988653
No 398
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.08 E-value=0.12 Score=44.86 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAK 201 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~ 201 (486)
....|+|+|.+|+|||||...+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345688999999999999998864
No 399
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.08 E-value=0.052 Score=52.03 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.-.+++|+|+.|+|||||.+.++--
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3467999999999999999999853
No 400
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=92.06 E-value=0.22 Score=47.94 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
+.++|+|+|.+|+|||||...+...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 4567999999999999999998754
No 401
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.04 E-value=0.14 Score=52.47 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
...+|.|.|++|+||||+|+.+.+....
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 4468999999999999999999988764
No 402
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.02 E-value=0.1 Score=45.06 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
..--|+|+|.+|+|||||+..+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999998865
No 403
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.00 E-value=0.09 Score=44.86 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
-|+|+|.+|+|||||...+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57899999999999999998543
No 404
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.98 E-value=0.1 Score=46.49 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..++|.|++|+||||+|+.+.+..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999998776
No 405
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.98 E-value=0.091 Score=45.00 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.|+|+|.+|+|||||...+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999998764
No 406
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.96 E-value=0.069 Score=45.23 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
--|+|+|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999998764
No 407
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.96 E-value=0.097 Score=45.01 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
--|+|+|.+|+|||||...+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 458899999999999999988654
No 408
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.95 E-value=0.093 Score=44.26 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.|+|+|.+|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998754
No 409
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.94 E-value=0.41 Score=48.28 Aligned_cols=95 Identities=21% Similarity=0.195 Sum_probs=56.2
Q ss_pred HHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCC-CHHHHHHHHHH----HhCCC-------
Q 042728 171 MEALRD-DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTP-DHHKIQNKLAF----DLGME------- 237 (486)
Q Consensus 171 ~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~----~l~~~------- 237 (486)
++.|.. ..-..++|.|..|+|||+|+.++.+.. +-+.++++-+.+.. ...++++++-+ .++..
T Consensus 223 ID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtvv 298 (600)
T 3vr4_A 223 IDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTVL 298 (600)
T ss_dssp HHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEEE
T ss_pred hhccCCccCCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceEE
Confidence 444432 234568999999999999999987763 34678888887764 44445544322 11110
Q ss_pred --CCCCCCHHHH------HHHHHHHHhc-CCcEEEEEeCCC
Q 042728 238 --FGLNENEFQR------AERLHERLKK-EKQLLIILDNIW 269 (486)
Q Consensus 238 --~~~~~~~~~~------~~~l~~~L~~-~kr~LlVlDdv~ 269 (486)
...+...... .-.+-+++.. ++.+||++|++-
T Consensus 299 V~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~t 339 (600)
T 3vr4_A 299 IANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTS 339 (600)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchH
Confidence 0012222221 2234445543 688999999985
No 410
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.94 E-value=0.093 Score=44.73 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
-.|.|+|.+|+|||||...+....
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999987653
No 411
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.94 E-value=0.15 Score=49.38 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=57.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHH--hCCCCCCCCCHHHHHHHHHHH
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFD--LGMEFGLNENEFQRAERLHER 254 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~--l~~~~~~~~~~~~~~~~l~~~ 254 (486)
....+++|+|+.|+||||+++.+........ -..++++.-.-......- ..++.+ ++.. . ......+...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~-~g~I~~~e~~~e~~~~~~-~~~v~Q~~~g~~---~---~~~~~~l~~~ 205 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTK-SYHIITIEDPIEYVFKHK-KSIVNQREVGED---T---KSFADALRAA 205 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHS-CCEEEEEESSCCSCCCCS-SSEEEEEEBTTT---B---SCSHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCC-CcEEEEecccHhhhhccC-ceEEEeeecCCC---H---HHHHHHHHHH
Confidence 3446899999999999999999987765320 122333321111000000 000000 0111 1 1123456666
Q ss_pred HhcCCcEEEEEeCCCCccccccccCCCCCcccccccCCCCCcEEEEEeCchhh
Q 042728 255 LKKEKQLLIILDNIWTKLELDKFGIPTGDVAEKDRKDDQRRCTIILTSRKQDL 307 (486)
Q Consensus 255 L~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 307 (486)
|.. .+=+|++|.+.+.+.+...... ...|..|+.|+....+
T Consensus 206 L~~-~pd~illdE~~d~e~~~~~l~~-----------~~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 206 LRE-DPDVIFVGEMRDLETVETALRA-----------AETGHLVFGTLHTNTA 246 (372)
T ss_dssp TTS-CCSEEEESCCCSHHHHHHHHHH-----------HTTTCEEEECCCCCSH
T ss_pred hhh-CcCEEEECCCCCHHHHHHHHHH-----------HhcCCEEEEEECcchH
Confidence 664 5568889999765443322111 2235668888876653
No 412
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.92 E-value=0.095 Score=44.58 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.|+|+|.+|+|||||...+.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998854
No 413
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.89 E-value=0.24 Score=47.23 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=25.4
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 176 DDKLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 176 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
..+..+|+|+|.+|+|||||+..+......
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345678999999999999999999877654
No 414
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.87 E-value=0.095 Score=45.08 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
--|+|+|.+|+|||||...+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999988764
No 415
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=91.86 E-value=0.27 Score=47.05 Aligned_cols=40 Identities=33% Similarity=0.341 Sum_probs=29.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCC
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQ 219 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~ 219 (486)
...++.+.|.||+||||+|..++...... =..++-++...
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~D~ 64 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEK--GLKVVIVSTDP 64 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHS--SCCEEEEECCT
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 44566677999999999999999887765 23455665543
No 416
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.84 E-value=0.071 Score=46.24 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVA 200 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~ 200 (486)
...|+|+|.+|+|||||...+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999999874
No 417
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.84 E-value=0.084 Score=44.60 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
--|+|+|.+|+|||||...+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999998753
No 418
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.84 E-value=0.097 Score=45.02 Aligned_cols=23 Identities=35% Similarity=0.210 Sum_probs=18.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
--|+|+|.+|+|||||++.+...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 35889999999999999655543
No 419
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.82 E-value=0.1 Score=44.03 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.-+.|.|.+|+||||||..+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 45789999999999999998864
No 420
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.82 E-value=0.19 Score=51.12 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=33.7
Q ss_pred cccHHHHHHHHHHHh--ccCCccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 160 FDSRMKVFQDVMEAL--RDDKLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 160 ~~gR~~~~~~l~~~L--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
-+.|.+..+.+.+.. ......+|.+.|++|+||||+|+.+......
T Consensus 351 ~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 351 WFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 344555555666655 2234568999999999999999999987654
No 421
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.81 E-value=0.099 Score=44.48 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-|+|+|.+|+|||||...+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999888753
No 422
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.81 E-value=0.088 Score=45.01 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.|+|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999988753
No 423
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.76 E-value=0.1 Score=44.33 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
...|+|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998743
No 424
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.74 E-value=0.1 Score=44.40 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..|+|+|.+|+|||||...+....
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 468899999999999999988643
No 425
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.74 E-value=0.1 Score=44.24 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999888743
No 426
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.72 E-value=0.1 Score=44.12 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.|+|+|.+|+|||||...+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999998754
No 427
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.72 E-value=0.1 Score=44.19 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.|.|+|.+|+|||||...+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999998754
No 428
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.68 E-value=0.16 Score=49.74 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=26.9
Q ss_pred HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 169 DVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 169 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.|.+.+ ...-.+++|+|+.|+||||+.+.+.....
T Consensus 158 ~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 158 NFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 344443 34456899999999999999999987764
No 429
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.67 E-value=0.092 Score=44.39 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAK 201 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~ 201 (486)
..-|+|+|.+|+|||||...+..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999998864
No 430
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.67 E-value=0.1 Score=45.52 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.|+|+|.+|+|||||+..+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46889999999999999988764
No 431
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.66 E-value=0.16 Score=47.57 Aligned_cols=33 Identities=24% Similarity=0.518 Sum_probs=24.8
Q ss_pred HHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 167 FQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 167 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
++++.+.+. -.+++|+|++|+|||||.+.+...
T Consensus 160 v~~lf~~l~---geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLK---GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhc---CCeEEEECCCCCcHHHHHHHhccc
Confidence 344555543 257899999999999999988743
No 432
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.65 E-value=0.057 Score=47.30 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAK 201 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~ 201 (486)
....|+|+|.+|+|||||.+.+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 445799999999999999988764
No 433
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.60 E-value=0.11 Score=45.23 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...|+|+|.+|+|||||...+....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468899999999999999987543
No 434
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.60 E-value=0.1 Score=45.60 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.--|+|+|.+|+|||||+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998764
No 435
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.59 E-value=0.082 Score=49.51 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAK 201 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~ 201 (486)
-|+|+|.+|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999764
No 436
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.54 E-value=0.11 Score=45.19 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
....|+|+|.+|+|||||...+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3456899999999999999998864
No 437
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.51 E-value=0.11 Score=44.55 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.|+|+|.+|+|||||...+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999998754
No 438
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.51 E-value=0.11 Score=45.24 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...|+|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999987643
No 439
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.51 E-value=0.11 Score=49.62 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.-.+++|+|+.|+|||||.+.+.....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 446799999999999999999998753
No 440
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.49 E-value=0.21 Score=49.67 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=52.3
Q ss_pred cEEEEEcCCCCcHHHHHH-HHHHHHhHccCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCC------CCCCCCHHHH---
Q 042728 180 NIIGVHGMGGVGKTTIVK-QVAKQVMEENLFD-KVVMAEVTQTP-DHHKIQNKLAFDLGME------FGLNENEFQR--- 247 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~-~v~~~~~~~~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~~--- 247 (486)
..++|.|.+|+|||+||. .+.+.. ..+ .++++-+.+.. .+.++.+.+...=... ...+.+....
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 458999999999999964 666553 245 35777787765 4556666665421111 1112222211
Q ss_pred ---HHHHHHHHh-cCCcEEEEEeCCCC
Q 042728 248 ---AERLHERLK-KEKQLLIILDNIWT 270 (486)
Q Consensus 248 ---~~~l~~~L~-~~kr~LlVlDdv~~ 270 (486)
...+-+++. .++..||++||+-.
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 223444444 36899999999854
No 441
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.48 E-value=0.12 Score=51.64 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=24.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
...+|.++|++|+||||+++.+......
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3457899999999999999999987753
No 442
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.46 E-value=0.091 Score=50.61 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.+++|+|+.|+|||||++.+....
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 479999999999999999998654
No 443
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.44 E-value=0.11 Score=44.70 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
-.|+|+|.+|+|||||...+....
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 458899999999999999987653
No 444
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.41 E-value=0.11 Score=45.90 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVA 200 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~ 200 (486)
.-|+|+|.+|+|||||...+.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458899999999999999876
No 445
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.41 E-value=0.11 Score=44.80 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.-.|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345889999999999999998865
No 446
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.40 E-value=0.12 Score=44.63 Aligned_cols=24 Identities=38% Similarity=0.372 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
--|+|+|.+|+|||||...+....
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999987643
No 447
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.38 E-value=0.11 Score=45.48 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...|+|+|.+|+|||||...+....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568899999999999999988653
No 448
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.38 E-value=0.12 Score=44.51 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
--|+|+|.+|+|||||...+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35889999999999999988754
No 449
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.36 E-value=0.12 Score=44.36 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.|+|+|.+|+|||||...+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999998754
No 450
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.31 E-value=0.11 Score=49.58 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAK 201 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~ 201 (486)
.+++|+|++|+|||||.+.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 5789999999999999998874
No 451
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.29 E-value=0.12 Score=44.65 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 346889999999999999998764
No 452
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.24 E-value=0.066 Score=57.46 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=36.7
Q ss_pred CccccccHHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 156 DFEAFDSRMKVFQDVMEALRD-------------DKLNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 156 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
....+.|-+...+.|.+.+.- .....+.++|++|+||||||+.+++...
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 345567777777777766531 1235688999999999999999998874
No 453
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.23 E-value=0.12 Score=44.25 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
...|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999998754
No 454
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.23 E-value=0.69 Score=45.87 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=51.9
Q ss_pred cEEEEEcCCCCcHHHHH-HHHHHHHhHccCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCCC------CCCCCHHHH---
Q 042728 180 NIIGVHGMGGVGKTTIV-KQVAKQVMEENLFD-KVVMAEVTQTP-DHHKIQNKLAFDLGMEF------GLNENEFQR--- 247 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~~--- 247 (486)
..++|.|..|+|||+|+ ..+.+. .+-+ .++++-+++.. .+.++.+++.+.=.... ..+.+....
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a 238 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLA 238 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHH
Confidence 45889999999999996 455553 2344 46788888775 45566666554311111 112222211
Q ss_pred ---HHHHHHHHh-cCCcEEEEEeCCCC
Q 042728 248 ---AERLHERLK-KEKQLLIILDNIWT 270 (486)
Q Consensus 248 ---~~~l~~~L~-~~kr~LlVlDdv~~ 270 (486)
...+-+++. .++..||++||+-.
T Consensus 239 ~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 239 PYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 122334443 36899999999854
No 455
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.23 E-value=0.12 Score=44.40 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
-.|+|+|.+|+|||||...+....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999988643
No 456
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.23 E-value=0.06 Score=49.29 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
+...|+|.|..|+||||+++.+.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999887654
No 457
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=91.23 E-value=0.12 Score=45.72 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 042728 181 IIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 181 vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-|+|+|.+|+|||+|+..+.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4789999999999999998753
No 458
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.19 E-value=0.095 Score=45.23 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=20.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAK 201 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~ 201 (486)
..-.|+|+|.+|+|||||...+..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 445689999999999999998853
No 459
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.12 E-value=0.13 Score=44.64 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
....|+|+|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3456899999999999999998754
No 460
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.08 E-value=0.14 Score=45.07 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
--|+|+|.+|+|||||...+...
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45889999999999999998764
No 461
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.04 E-value=0.13 Score=44.82 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.|+|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999998754
No 462
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.00 E-value=0.13 Score=44.07 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
-.|+|+|.+|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999987653
No 463
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.99 E-value=0.11 Score=51.59 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34579999999999999999998654
No 464
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.93 E-value=0.13 Score=44.69 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
--|+|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999988754
No 465
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=90.91 E-value=0.51 Score=43.81 Aligned_cols=53 Identities=23% Similarity=0.259 Sum_probs=35.5
Q ss_pred HHHHHHHhccCCccEEEEEc---CCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCC
Q 042728 167 FQDVMEALRDDKLNIIGVHG---MGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPD 222 (486)
Q Consensus 167 ~~~l~~~L~~~~~~vi~I~G---~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~ 222 (486)
+..+.+.+.. ..++|+|++ -||+||||+|..++...... -..++-|......+
T Consensus 23 ~~~~~r~~~~-~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~--G~rVlliD~D~q~~ 78 (298)
T 2oze_A 23 LEELRRILSN-KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKL--NLKVLMIDKDLQAT 78 (298)
T ss_dssp HHHHHHHHHH-HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHT--TCCEEEEEECTTCH
T ss_pred HHHHHHHhcC-CCcEEEEEeccCCCCchHHHHHHHHHHHHHhC--CCeEEEEeCCCCCC
Confidence 3444444433 345677775 99999999999999887654 23567777765543
No 466
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.90 E-value=0.11 Score=45.04 Aligned_cols=23 Identities=30% Similarity=0.288 Sum_probs=19.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAK 201 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~ 201 (486)
..-|+|+|.+|+|||||.+.+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999886554
No 467
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.87 E-value=0.14 Score=43.56 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=21.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.....|+|+|.+|+|||||...+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34557889999999999999998754
No 468
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.86 E-value=0.17 Score=44.73 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
...|++-|+.|+||||+++.+.+....
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 357999999999999999999988753
No 469
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.85 E-value=0.14 Score=44.78 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
..|+|+|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999888753
No 470
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.83 E-value=0.13 Score=46.25 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4467899999999999999998753
No 471
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.81 E-value=0.16 Score=52.37 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQVME 205 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 205 (486)
...+|.|.|++|+||||+|+.+.+....
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~ 78 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVC 78 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 4568999999999999999999988743
No 472
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.77 E-value=0.16 Score=45.24 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999998754
No 473
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=90.73 E-value=0.17 Score=44.91 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
..+|.|.|+.|+||||+|+.++....
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998874
No 474
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.72 E-value=0.13 Score=48.03 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999998754
No 475
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.71 E-value=0.14 Score=43.96 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.|+|+|.+|+|||||...+.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36889999999999999998865
No 476
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=90.70 E-value=0.22 Score=43.30 Aligned_cols=26 Identities=12% Similarity=0.187 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
...+|+|+|++|+||+|+|..+.+..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 45689999999999999999887654
No 477
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.69 E-value=0.12 Score=50.67 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~ 202 (486)
++|+|+.|+|||||.+.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999998753
No 478
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.69 E-value=0.14 Score=44.51 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.--|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346889999999999999998744
No 479
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.68 E-value=0.14 Score=44.36 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.--|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999988754
No 480
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.65 E-value=0.15 Score=44.39 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.-.|+|+|.+|+|||||+..+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 346889999999999999998753
No 481
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.64 E-value=0.15 Score=50.47 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 177 DKLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 177 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
..-..++|+|+.|+|||||++.++...
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 344679999999999999999998875
No 482
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.60 E-value=0.15 Score=44.64 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
--|+|+|.+|+|||||+..+...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999988754
No 483
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.59 E-value=0.14 Score=44.06 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 178 KLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 178 ~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
....|+|+|.+|+|||||...+...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4467899999999999999988643
No 484
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=90.58 E-value=0.26 Score=44.79 Aligned_cols=41 Identities=27% Similarity=0.381 Sum_probs=31.5
Q ss_pred CccEEEEE-cCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC
Q 042728 178 KLNIIGVH-GMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT 220 (486)
Q Consensus 178 ~~~vi~I~-G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 220 (486)
..++|+|+ +-||+||||+|..++...... -..++-|.....
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~--g~~VlliD~D~~ 46 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARL--GKRVLLVDLDPQ 46 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHT--TCCEEEEECCTT
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHC--CCCEEEEECCCC
Confidence 45788887 688999999999999888764 235677776554
No 485
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=90.58 E-value=0.37 Score=43.19 Aligned_cols=38 Identities=21% Similarity=0.081 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 163 RMKVFQDVMEALRDDKLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 163 R~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
|....+.+..++.. + -+.|+|+.|.|||.+|..+....
T Consensus 95 ~~~Q~~ai~~~~~~-~--~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVD-K--RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTT-S--EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhC-C--CEEEEeCCCCCHHHHHHHHHHHc
Confidence 44444444444433 2 37799999999999998887654
No 486
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.57 E-value=0.15 Score=44.24 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
.-|+|+|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999888754
No 487
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.53 E-value=0.15 Score=44.47 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 179 LNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 179 ~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
...|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999988754
No 488
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.49 E-value=0.14 Score=44.96 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.|+|+|.+|+|||||...+...
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999998754
No 489
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.48 E-value=0.086 Score=44.86 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=9.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
--|+|+|.+|+|||||...+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999988754
No 490
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.45 E-value=0.1 Score=49.57 Aligned_cols=85 Identities=22% Similarity=0.259 Sum_probs=44.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHHKIQNKLAFDLGMEFGLNENEFQRAERLHERLKKEK 259 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~k 259 (486)
.+++|+|+.|+|||||++.+...... -.+.+.+.-......... . +.++.-.. .-......+...|.. +
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~---~~g~i~i~~~~e~~~~~~-~---~~i~~~~g---gg~~~r~~la~aL~~-~ 240 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK---EERIISIEDTEEIVFKHH-K---NYTQLFFG---GNITSADCLKSCLRM-R 240 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT---TSCEEEEESSCCCCCSSC-S---SEEEEECB---TTBCHHHHHHHHTTS-C
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC---CCcEEEECCeeccccccc-h---hEEEEEeC---CChhHHHHHHHHhhh-C
Confidence 46999999999999999998865432 234555542221110000 0 00000000 011223345555654 5
Q ss_pred cEEEEEeCCCCccccc
Q 042728 260 QLLIILDNIWTKLELD 275 (486)
Q Consensus 260 r~LlVlDdv~~~~~~~ 275 (486)
+-+|++|++.+.+.++
T Consensus 241 p~ilildE~~~~e~~~ 256 (330)
T 2pt7_A 241 PDRIILGELRSSEAYD 256 (330)
T ss_dssp CSEEEECCCCSTHHHH
T ss_pred CCEEEEcCCChHHHHH
Confidence 6788899987754333
No 491
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.44 E-value=0.16 Score=46.64 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998754
No 492
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=90.41 E-value=0.28 Score=48.57 Aligned_cols=43 Identities=14% Similarity=0.285 Sum_probs=31.5
Q ss_pred ccHHHHHHHHHHHhcc-----------CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 161 DSRMKVFQDVMEALRD-----------DKLNIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 161 ~gR~~~~~~l~~~L~~-----------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
.|-++.++.|.+.+.. +....++|+|.+|+|||||.+.+....
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 4566777777766631 123478999999999999999987653
No 493
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=90.40 E-value=0.31 Score=45.24 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=26.4
Q ss_pred HHHHHHHhcc------CCccEEEEEcCCCCcHHHHHHHHHHH
Q 042728 167 FQDVMEALRD------DKLNIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 167 ~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
++++.+.|.. .....|+|+|.+|+|||||...+...
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 4455555532 23467999999999999999998754
No 494
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.38 E-value=0.15 Score=43.99 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQV 203 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~ 203 (486)
--|+|+|.+|+|||||...+....
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999987543
No 495
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.38 E-value=0.13 Score=43.66 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQ 202 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~ 202 (486)
-.|+|+|.+|+|||||...+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999998754
No 496
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.31 E-value=0.15 Score=43.53 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=24.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCC
Q 042728 182 IGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQT 220 (486)
Q Consensus 182 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~ 220 (486)
+.|+|.+|+||||+|.+++.. . ..++++.-+..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~-----~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-A-----PQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-C-----SSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-C-----CCeEEEecCCC
Confidence 689999999999999998744 1 23566654443
No 497
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.27 E-value=0.29 Score=42.79 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
+-|+|=|..|+||||+++.+.+...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4588999999999999999999885
No 498
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=90.24 E-value=0.23 Score=43.84 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=22.5
Q ss_pred cEEEEEcC-CCCcHHHHHHHHHHHHhHc
Q 042728 180 NIIGVHGM-GGVGKTTIVKQVAKQVMEE 206 (486)
Q Consensus 180 ~vi~I~G~-~GiGKTtLa~~v~~~~~~~ 206 (486)
++|.|.|. ||+||||++..++.....+
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~ 29 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAA 29 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46778874 8999999999999888755
No 499
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=90.21 E-value=0.23 Score=47.90 Aligned_cols=42 Identities=26% Similarity=0.335 Sum_probs=31.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhHccCCCeEEEEEeCCCCCHH
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVMEENLFDKVVMAEVTQTPDHH 224 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (486)
+++.+.|.||+||||+|..++...... -..++-++. +..+..
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~--g~~vllvd~-~~~~l~ 44 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQ--GKRVLLAGL-AEPVLP 44 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHT--TCCEEEEEC-SCSHHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCeEEEeC-CCCChH
Confidence 567889999999999999999887654 235667776 544443
No 500
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.16 E-value=0.16 Score=50.57 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 042728 180 NIIGVHGMGGVGKTTIVKQVAKQVM 204 (486)
Q Consensus 180 ~vi~I~G~~GiGKTtLa~~v~~~~~ 204 (486)
.+++|+|+.|+|||||.+.+..-..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 7899999999999999999987653
Done!