Query 042730
Match_columns 88
No_of_seqs 112 out of 631
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 08:51:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042730.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042730hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03220 uncharacterized prote 100.0 4.3E-39 9.3E-44 218.6 7.6 87 1-87 1-102 (105)
2 PLN03219 uncharacterized prote 100.0 4.2E-38 9.2E-43 214.6 7.3 87 1-87 1-104 (108)
3 PLN03090 auxin-responsive fami 100.0 1.2E-37 2.5E-42 211.3 7.3 80 7-88 11-103 (104)
4 PF02519 Auxin_inducible: Auxi 100.0 4.4E-36 9.6E-41 201.2 7.3 67 20-88 33-99 (100)
5 PF02214 BTB_2: BTB/POZ domain 83.7 1.1 2.4E-05 28.1 2.4 55 29-87 2-59 (94)
6 PRK02899 adaptor protein; Prov 80.3 1.5 3.2E-05 32.3 2.3 24 50-74 39-62 (197)
7 PF02100 ODC_AZ: Ornithine dec 76.7 2.4 5.2E-05 28.5 2.4 46 38-85 25-74 (108)
8 PRK02315 adaptor protein; Prov 72.7 2.9 6.3E-05 31.4 2.1 24 50-74 39-62 (233)
9 smart00666 PB1 PB1 domain. Pho 69.5 14 0.0003 22.3 4.4 48 31-84 7-64 (81)
10 PF05389 MecA: Negative regula 67.4 1.8 3.8E-05 31.7 0.0 25 49-74 38-62 (220)
11 PF02209 VHP: Villin headpiece 55.5 7.2 0.00016 21.8 1.1 19 46-64 1-19 (36)
12 smart00153 VHP Villin headpiec 53.9 8.9 0.00019 21.3 1.3 19 46-64 1-19 (36)
13 PF12062 HSNSD: heparan sulfat 51.5 11 0.00024 31.9 2.0 44 21-65 91-141 (487)
14 PF05041 Pecanex_C: Pecanex pr 47.5 6.5 0.00014 30.1 0.1 29 5-34 190-220 (232)
15 PF08861 DUF1828: Domain of un 43.5 49 0.0011 20.9 3.8 39 49-87 44-82 (90)
16 PF00651 BTB: BTB/POZ domain; 42.4 79 0.0017 19.2 4.6 53 28-87 13-70 (111)
17 PF11834 DUF3354: Domain of un 41.6 19 0.00042 22.6 1.6 23 38-66 20-42 (69)
18 cd06410 PB1_UP2 Uncharacterize 41.6 66 0.0014 21.2 4.3 47 28-79 16-74 (97)
19 PF12058 DUF3539: Protein of u 40.9 5.1 0.00011 26.7 -1.2 13 45-57 4-16 (88)
20 PRK13277 5-formaminoimidazole- 39.8 6.8 0.00015 31.9 -0.9 32 12-43 79-111 (366)
21 PF08141 SspH: Small acid-solu 38.1 25 0.00055 21.5 1.7 41 8-48 3-57 (58)
22 PRK01625 sspH acid-soluble spo 37.8 25 0.00054 21.7 1.6 41 8-48 3-57 (59)
23 TIGR02861 SASP_H small acid-so 37.4 27 0.00059 21.4 1.7 40 8-47 3-56 (58)
24 PRK03174 sspH acid-soluble spo 36.1 26 0.00057 21.6 1.5 40 8-47 3-56 (59)
25 PRK10308 3-methyl-adenine DNA 35.3 1.1E+02 0.0025 23.4 5.3 62 25-87 45-120 (283)
26 COG1759 5-formaminoimidazole-4 35.2 17 0.00038 29.7 0.8 30 15-44 82-112 (361)
27 PF11876 DUF3396: Protein of u 35.0 33 0.00071 25.4 2.2 38 38-75 25-64 (208)
28 cd01406 SIR2-like Sir2-like: P 31.0 59 0.0013 23.6 2.9 36 26-68 1-36 (242)
29 cd05992 PB1 The PB1 domain is 28.9 1.3E+02 0.0028 17.7 6.9 33 30-66 5-37 (81)
30 TIGR02529 EutJ ethanolamine ut 28.4 61 0.0013 23.9 2.7 30 50-79 44-73 (239)
31 PF11822 DUF3342: Domain of un 27.1 88 0.0019 25.1 3.5 47 37-87 13-64 (317)
32 COG1168 MalY Bifunctional PLP- 26.5 76 0.0016 26.3 3.1 51 7-67 6-60 (388)
33 PRK05084 xerS site-specific ty 26.3 2.4E+02 0.0052 21.0 5.6 61 24-86 225-293 (357)
34 PF00564 PB1: PB1 domain; Int 26.0 1.5E+02 0.0033 17.6 4.4 45 30-79 6-61 (84)
35 PRK14189 bifunctional 5,10-met 25.6 82 0.0018 24.6 3.1 53 23-88 31-85 (285)
36 PF11470 TUG-UBL1: GLUT4 regul 25.4 87 0.0019 19.3 2.6 33 38-72 7-39 (65)
37 PF05194 UreE_C: UreE urease a 24.8 96 0.0021 19.5 2.8 27 26-59 25-51 (87)
38 PF15387 DUF4611: Domain of un 24.5 55 0.0012 22.2 1.6 17 70-86 13-33 (96)
39 KOG1748 Acyl carrier protein/N 23.5 39 0.00084 24.0 0.8 26 60-85 98-124 (131)
40 TIGR03793 TOMM_pelo TOMM prope 23.0 1.3E+02 0.0027 19.2 3.1 26 47-73 14-43 (77)
41 PRK14194 bifunctional 5,10-met 22.3 95 0.0021 24.5 2.9 54 22-88 31-86 (301)
42 COG4862 MecA Negative regulato 22.0 65 0.0014 24.8 1.8 26 49-75 38-63 (224)
43 PRK14166 bifunctional 5,10-met 21.9 93 0.002 24.3 2.7 53 23-88 29-83 (282)
44 KOG0741 AAA+-type ATPase [Post 21.5 60 0.0013 28.8 1.7 35 27-74 293-327 (744)
45 PF06849 DUF1246: Protein of u 21.1 0.93 2E-05 31.9 -7.7 29 16-44 63-92 (124)
46 PF12518 DUF3721: Protein of u 21.0 60 0.0013 18.0 1.1 22 57-78 8-31 (34)
47 PRK14193 bifunctional 5,10-met 20.6 1.9E+02 0.004 22.7 4.1 53 23-88 31-85 (284)
48 cd00800 INT_Lambda_C Lambda in 20.3 2.6E+02 0.0057 18.2 4.4 48 2-61 32-79 (162)
49 PF01584 CheW: CheW-like domai 20.0 1.4E+02 0.0031 18.8 2.9 20 27-49 2-21 (138)
No 1
>PLN03220 uncharacterized protein; Provisional
Probab=100.00 E-value=4.3e-39 Score=218.55 Aligned_cols=87 Identities=63% Similarity=1.085 Sum_probs=78.3
Q ss_pred Ccccchhhhhc-ccccc-c----------cccccCCCceEEEEEcCC---cceEEEEeccccCchHHHHHHhhhhhhcCC
Q 042730 1 MGFRLLKIVSN-KNTEK-C----------SQATIVPKGHFVVYVGET---TKKRFVLPISYLKHPSFQNLLSQTEEEFGF 65 (88)
Q Consensus 1 m~~~~~~~~~~-~~~~~-~----------~~~~~vpkG~~~VyVG~e---~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~ 65 (88)
||+++..|.++ ||+++ + +.+.+|||||||||||++ +.+||+||++|||||.|++||++|||||||
T Consensus 1 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf 80 (105)
T PLN03220 1 MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGF 80 (105)
T ss_pred CCcchhhhHHHHHHHHHHHhhcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCC
Confidence 89999999986 99997 2 355689999999999982 249999999999999999999999999999
Q ss_pred ccCCCceEeeCCHHHHHHHHhc
Q 042730 66 DHPMGGLTIPCSEEVFMDLISS 87 (88)
Q Consensus 66 ~~~~G~L~IPC~~~~F~~vl~~ 87 (88)
+|++|+|+||||++.|++++++
T Consensus 81 ~~~~G~L~IPCd~~~F~~ll~s 102 (105)
T PLN03220 81 NHPMGGLTIPCREEVFLDLIAS 102 (105)
T ss_pred CCCCCCEEeeCCHHHHHHHHHh
Confidence 9866999999999999999874
No 2
>PLN03219 uncharacterized protein; Provisional
Probab=100.00 E-value=4.2e-38 Score=214.57 Aligned_cols=87 Identities=55% Similarity=0.960 Sum_probs=78.0
Q ss_pred Ccccchhhhhccccccc----------------cccccCCCceEEEEEcCC-cceEEEEeccccCchHHHHHHhhhhhhc
Q 042730 1 MGFRLLKIVSNKNTEKC----------------SQATIVPKGHFVVYVGET-TKKRFVLPISYLKHPSFQNLLSQTEEEF 63 (88)
Q Consensus 1 m~~~~~~~~~~~~~~~~----------------~~~~~vpkG~~~VyVG~e-~~~RfvVp~~~L~hP~F~~LL~~aeeEf 63 (88)
||...+.+.+||||+++ +.+.+|||||+|||||++ +++||+||++|||||.|++||++|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEf 80 (108)
T PLN03219 1 MGLMRSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEEC 80 (108)
T ss_pred CchHHHHHhhHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHh
Confidence 88889988999999971 234679999999999983 3599999999999999999999999999
Q ss_pred CCccCCCceEeeCCHHHHHHHHhc
Q 042730 64 GFDHPMGGLTIPCSEEVFMDLISS 87 (88)
Q Consensus 64 G~~~~~G~L~IPC~~~~F~~vl~~ 87 (88)
||++++|+|+|||+++.|++++++
T Consensus 81 Gf~~~~G~L~IPCd~~~F~~ll~~ 104 (108)
T PLN03219 81 GFHHSMGGLTIPCREESFLHLITS 104 (108)
T ss_pred CCCCCCCCEEEeCCHHHHHHHHHh
Confidence 999866999999999999999974
No 3
>PLN03090 auxin-responsive family protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=211.27 Aligned_cols=80 Identities=55% Similarity=0.893 Sum_probs=72.6
Q ss_pred hhhhcccccc-------c------cccccCCCceEEEEEcCCcceEEEEeccccCchHHHHHHhhhhhhcCCccCCCceE
Q 042730 7 KIVSNKNTEK-------C------SQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLT 73 (88)
Q Consensus 7 ~~~~~~~~~~-------~------~~~~~vpkG~~~VyVG~e~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~ 73 (88)
.++++||+++ . ..+.+|||||||||||+++ +||+||++|||||.|++||++|||||||+|+ |+|+
T Consensus 11 ~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~~~-~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~-G~L~ 88 (104)
T PLN03090 11 QTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENR-SRYIVPISFLTHPEFQSLLQQAEEEFGFDHD-MGLT 88 (104)
T ss_pred HHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECCCC-EEEEEEHHHcCCHHHHHHHHHHHHHhCCCCC-CcEE
Confidence 3678899997 1 1356899999999999976 9999999999999999999999999999997 9999
Q ss_pred eeCCHHHHHHHHhcC
Q 042730 74 IPCSEEVFMDLISSL 88 (88)
Q Consensus 74 IPC~~~~F~~vl~~l 88 (88)
||||++.|++++|+|
T Consensus 89 IPC~~~~Fe~ll~~i 103 (104)
T PLN03090 89 IPCEEVVFRSLTSMI 103 (104)
T ss_pred EeCCHHHHHHHHHHh
Confidence 999999999999986
No 4
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=100.00 E-value=4.4e-36 Score=201.21 Aligned_cols=67 Identities=61% Similarity=1.070 Sum_probs=64.1
Q ss_pred cccCCCceEEEEEcCCcceEEEEeccccCchHHHHHHhhhhhhcCCccCCCceEeeCCHHHHHHHHhcC
Q 042730 20 ATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLTIPCSEEVFMDLISSL 88 (88)
Q Consensus 20 ~~~vpkG~~~VyVG~e~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F~~vl~~l 88 (88)
..++|+||||||||+++ +||+||++|||||.|++||++|||||||+++ |+|+|||+++.|++++|+|
T Consensus 33 ~~~vp~G~~~VyVG~~~-~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~-G~l~iPC~~~~Fe~~l~~l 99 (100)
T PF02519_consen 33 ESDVPKGHFAVYVGEER-RRFVVPVSYLNHPLFQELLEQAEEEFGFDQD-GPLTIPCDVVLFEHLLWLL 99 (100)
T ss_pred cCCCCCCeEEEEeCccc-eEEEechHHcCchhHHHHHHHHhhhcCcCCC-CcEEeeCCHHHHHHHHHHh
Confidence 47899999999999976 9999999999999999999999999999996 9999999999999999986
No 5
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=83.73 E-value=1.1 Score=28.07 Aligned_cols=55 Identities=24% Similarity=0.281 Sum_probs=39.3
Q ss_pred EEEEcCCcceEEEEeccccC-ch--HHHHHHhhhhhhcCCccCCCceEeeCCHHHHHHHHhc
Q 042730 29 VVYVGETTKKRFVLPISYLK-HP--SFQNLLSQTEEEFGFDHPMGGLTIPCSEEVFMDLISS 87 (88)
Q Consensus 29 ~VyVG~e~~~RfvVp~~~L~-hP--~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F~~vl~~ 87 (88)
.+=||. ++|.++.+.|. +| .|..++....... +..++|.+-|-++...|++|+..
T Consensus 2 ~lNVGG---~~f~~~~~tL~~~~~s~l~~~~~~~~~~~-~~~~~~~~fiDRdp~~F~~IL~y 59 (94)
T PF02214_consen 2 RLNVGG---TIFETSRSTLTRYPDSLLARLFSGERSDD-YDDDDGEYFIDRDPELFEYILNY 59 (94)
T ss_dssp EEEETT---EEEEEEHHHHHTSTTSTTTSHHHTGHGGG-EETTTTEEEESS-HHHHHHHHHH
T ss_pred EEEECC---EEEEEcHHHHhhCCCChhhhHHhhccccc-cCCccceEEeccChhhhhHHHHH
Confidence 345774 88999999887 54 6888888652221 22234899999999999999874
No 6
>PRK02899 adaptor protein; Provisional
Probab=80.30 E-value=1.5 Score=32.31 Aligned_cols=24 Identities=21% Similarity=0.702 Sum_probs=20.5
Q ss_pred hHHHHHHhhhhhhcCCccCCCceEe
Q 042730 50 PSFQNLLSQTEEEFGFDHPMGGLTI 74 (88)
Q Consensus 50 P~F~~LL~~aeeEfG~~~~~G~L~I 74 (88)
-.|.++|++|..|+||.-+ |||+|
T Consensus 39 ~lF~~mm~Ea~~e~~F~~~-~pl~~ 62 (197)
T PRK02899 39 QLFRDMMQEANKELGFEAD-GPIAV 62 (197)
T ss_pred HHHHHHHHHhhhccCcccC-CeEEE
Confidence 3577889999999999976 99986
No 7
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=76.72 E-value=2.4 Score=28.53 Aligned_cols=46 Identities=28% Similarity=0.357 Sum_probs=23.1
Q ss_pred eEEE-EeccccCc---hHHHHHHhhhhhhcCCccCCCceEeeCCHHHHHHHH
Q 042730 38 KRFV-LPISYLKH---PSFQNLLSQTEEEFGFDHPMGGLTIPCSEEVFMDLI 85 (88)
Q Consensus 38 ~Rfv-Vp~~~L~h---P~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F~~vl 85 (88)
.=|+ +|-..+.+ ..|.+|||.|||.++.++ -.++++=+-.+...++
T Consensus 25 ~L~V~ip~~~~~~~~K~~lvaLLElAee~L~c~~--vvic~~k~~~d~~~Ll 74 (108)
T PF02100_consen 25 TLFVFIPSSALGQGSKESLVALLELAEEKLGCSH--VVICLDKNRPDRASLL 74 (108)
T ss_dssp EEEEE-SS---SS--SHHHHHHHHHHHHHH------EEEEE---SS-HHHHH
T ss_pred EEEEEECCcccccccHHHHHHHHHHhcCcCCCCE--EEEEEECCchhHHHhh
Confidence 5566 46544444 459999999999999875 4666664444444443
No 8
>PRK02315 adaptor protein; Provisional
Probab=72.71 E-value=2.9 Score=31.40 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.4
Q ss_pred hHHHHHHhhhhhhcCCccCCCceEe
Q 042730 50 PSFQNLLSQTEEEFGFDHPMGGLTI 74 (88)
Q Consensus 50 P~F~~LL~~aeeEfG~~~~~G~L~I 74 (88)
-.|.++|++|..|+||.. +|||+|
T Consensus 39 ~fF~~mm~Ea~~e~~F~~-~~pl~~ 62 (233)
T PRK02315 39 EFFYSMMDEVDEEDDFAD-EGPLWF 62 (233)
T ss_pred HHHHHHHHHhccccCccc-CCeEEE
Confidence 469999999999999997 499986
No 9
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=69.46 E-value=14 Score=22.35 Aligned_cols=48 Identities=25% Similarity=0.417 Sum_probs=32.9
Q ss_pred EEcCCcceEEEEeccccCchHHHHHHhhhhhhcCCc----------cCCCceEeeCCHHHHHHH
Q 042730 31 YVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFD----------HPMGGLTIPCSEEVFMDL 84 (88)
Q Consensus 31 yVG~e~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~----------~~~G~L~IPC~~~~F~~v 84 (88)
+-|++. +||.+|- ...|.+|..+..+.|+.. .++..++|.++. ++...
T Consensus 7 ~~~~~~-~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~-Dl~~a 64 (81)
T smart00666 7 RYGGET-RRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDE-DLEEA 64 (81)
T ss_pred EECCEE-EEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHH-HHHHH
Confidence 336544 8999885 678999999998888874 122367788864 34433
No 10
>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.
Probab=67.44 E-value=1.8 Score=31.74 Aligned_cols=25 Identities=36% Similarity=0.689 Sum_probs=0.0
Q ss_pred chHHHHHHhhhhhhcCCccCCCceEe
Q 042730 49 HPSFQNLLSQTEEEFGFDHPMGGLTI 74 (88)
Q Consensus 49 hP~F~~LL~~aeeEfG~~~~~G~L~I 74 (88)
+-.|..+|++|.+|+||..+ |+|++
T Consensus 38 e~fF~~ileea~~e~~F~~~-~~l~~ 62 (220)
T PF05389_consen 38 EEFFYSILEEADEEHGFEND-GPLTF 62 (220)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHhccccCcccC-CeEEE
Confidence 35699999999999999984 99875
No 11
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=55.51 E-value=7.2 Score=21.80 Aligned_cols=19 Identities=32% Similarity=0.651 Sum_probs=15.3
Q ss_pred ccCchHHHHHHhhhhhhcC
Q 042730 46 YLKHPSFQNLLSQTEEEFG 64 (88)
Q Consensus 46 ~L~hP~F~~LL~~aeeEfG 64 (88)
||+.-.|+++..++.+||-
T Consensus 1 YLsd~dF~~vFgm~~~eF~ 19 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFY 19 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHH
T ss_pred CcCHHHHHHHHCCCHHHHH
Confidence 7899999999999999984
No 12
>smart00153 VHP Villin headpiece domain.
Probab=53.87 E-value=8.9 Score=21.32 Aligned_cols=19 Identities=37% Similarity=0.670 Sum_probs=17.0
Q ss_pred ccCchHHHHHHhhhhhhcC
Q 042730 46 YLKHPSFQNLLSQTEEEFG 64 (88)
Q Consensus 46 ~L~hP~F~~LL~~aeeEfG 64 (88)
||+.-.|+..+.++.+||-
T Consensus 1 yLsdeeF~~vfgmsr~eF~ 19 (36)
T smart00153 1 YLSDEDFEEVFGMTREEFY 19 (36)
T ss_pred CCCHHHHHHHHCCCHHHHH
Confidence 7889999999999999983
No 13
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=51.51 E-value=11 Score=31.90 Aligned_cols=44 Identities=32% Similarity=0.493 Sum_probs=36.5
Q ss_pred ccCC-CceEEEEEcCCcceEEEEec-----cccCchH-HHHHHhhhhhhcCC
Q 042730 21 TIVP-KGHFVVYVGETTKKRFVLPI-----SYLKHPS-FQNLLSQTEEEFGF 65 (88)
Q Consensus 21 ~~vp-kG~~~VyVG~e~~~RfvVp~-----~~L~hP~-F~~LL~~aeeEfG~ 65 (88)
..+| ||.+|+++-.++ .||.+-+ .|+|-+. -++||++=..|||-
T Consensus 91 ei~~~kg~lP~LT~~~k-GRy~lII~ENl~kYlnld~wNR~LLdkYC~ey~V 141 (487)
T PF12062_consen 91 EIASGKGDLPVLTDNDK-GRYSLIIFENLLKYLNLDSWNRELLDKYCREYGV 141 (487)
T ss_pred EEccCCCCCCccccCCC-CcEEEEEehhHHHHcCChHHHHHHHHHHhHccCc
Confidence 3445 689999996654 8998886 8999998 89999999999975
No 14
>PF05041 Pecanex_C: Pecanex protein (C-terminus); InterPro: IPR007735 This family consists of pecanex protein homologues. The pecanex protein is a maternal-effect neurogenic gene found in Drosophila [].; GO: 0016021 integral to membrane
Probab=47.49 E-value=6.5 Score=30.12 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=22.7
Q ss_pred chhhhhcccccc--ccccccCCCceEEEEEcC
Q 042730 5 LLKIVSNKNTEK--CSQATIVPKGHFVVYVGE 34 (88)
Q Consensus 5 ~~~~~~~~~~~~--~~~~~~vpkG~~~VyVG~ 34 (88)
+.+|...++++| -..+.+.|=|| |+||..
T Consensus 190 R~SIQ~~~~~LRNl~~qs~d~PlGY-PiYvSP 220 (232)
T PF05041_consen 190 RYSIQNHKQLLRNLINQSADPPLGY-PIYVSP 220 (232)
T ss_pred cccccchHHHHHHHHHhhccCCCCc-ceEecc
Confidence 345677788888 35678999999 999984
No 15
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=43.52 E-value=49 Score=20.88 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=33.2
Q ss_pred chHHHHHHhhhhhhcCCccCCCceEeeCCHHHHHHHHhc
Q 042730 49 HPSFQNLLSQTEEEFGFDHPMGGLTIPCSEEVFMDLISS 87 (88)
Q Consensus 49 hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F~~vl~~ 87 (88)
.|.=+++|+..-..||+.-++|.|.+.++.+.|-....+
T Consensus 44 s~~R~~~l~~il~~~gv~~~~~el~~~~~~~~~~~~~~~ 82 (90)
T PF08861_consen 44 SKKRKKILNSILNGFGVELDEGELFIKTSEENFPQAKHR 82 (90)
T ss_pred chHHHHHHHHHHHHcCccccCCEEEEEeCHHHHHHHHHH
Confidence 577789999999999999877999999999988766543
No 16
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=42.41 E-value=79 Score=19.25 Aligned_cols=53 Identities=26% Similarity=0.536 Sum_probs=35.7
Q ss_pred EEEEEcCCcceEEEEecccc--CchHHHHHHhhhhhhcCCccCCC--ceEee-CCHHHHHHHHhc
Q 042730 28 FVVYVGETTKKRFVLPISYL--KHPSFQNLLSQTEEEFGFDHPMG--GLTIP-CSEEVFMDLISS 87 (88)
Q Consensus 28 ~~VyVG~e~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G--~L~IP-C~~~~F~~vl~~ 87 (88)
+.+.||+ . ++|-+.-..| ..|.|+.+++.. +...+ + .+.++ |+.+.|+.++..
T Consensus 13 ~~i~v~d-~-~~~~vhk~iL~~~S~~F~~~~~~~----~~~~~-~~~~i~~~~~~~~~~~~~l~~ 70 (111)
T PF00651_consen 13 VTIRVGD-G-KTFYVHKNILAARSPYFRNLFEGS----KFKES-TVPEISLPDVSPEAFEAFLEY 70 (111)
T ss_dssp EEEEETT-T-EEEEE-HHHHHHHBHHHHHHHTTT----TSTTS-SEEEEEETTSCHHHHHHHHHH
T ss_pred EEEEECC-C-EEEeechhhhhccchhhhhccccc----ccccc-ccccccccccccccccccccc
Confidence 3566665 2 7888888877 568999999988 11112 3 35555 789999988763
No 17
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=41.64 E-value=19 Score=22.59 Aligned_cols=23 Identities=43% Similarity=0.728 Sum_probs=19.2
Q ss_pred eEEEEeccccCchHHHHHHhhhhhhcCCc
Q 042730 38 KRFVLPISYLKHPSFQNLLSQTEEEFGFD 66 (88)
Q Consensus 38 ~RfvVp~~~L~hP~F~~LL~~aeeEfG~~ 66 (88)
+=..+| -.+++||+.|++.||+.
T Consensus 20 Kvi~lP------~SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 20 KVIWLP------DSLEELLKIASEKFGFS 42 (69)
T ss_pred EEEEcC------ccHHHHHHHHHHHhCCC
Confidence 556666 47999999999999985
No 18
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=41.62 E-value=66 Score=21.21 Aligned_cols=47 Identities=28% Similarity=0.346 Sum_probs=31.5
Q ss_pred EEEEEcCCcceEEEEeccccCchHHHHHHhhhhhhcCCccC------------CCceEeeCCHH
Q 042730 28 FVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHP------------MGGLTIPCSEE 79 (88)
Q Consensus 28 ~~VyVG~e~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~------------~G~L~IPC~~~ 79 (88)
-.=|||.+. +--.|+-+ ..|.+|..+..+.++.... ++-+.|.||.+
T Consensus 16 ~l~Y~GG~t-r~i~V~r~----~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeD 74 (97)
T cd06410 16 QLRYVGGET-RIVSVDRS----ISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDED 74 (97)
T ss_pred CEEEcCCce-EEEEEcCC----CCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHH
Confidence 346999764 66777755 4677788887777766541 24566778864
No 19
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=40.91 E-value=5.1 Score=26.74 Aligned_cols=13 Identities=46% Similarity=0.922 Sum_probs=9.1
Q ss_pred cccCchHHHHHHh
Q 042730 45 SYLKHPSFQNLLS 57 (88)
Q Consensus 45 ~~L~hP~F~~LL~ 57 (88)
.|||||.|.-|-.
T Consensus 4 ~YLNHPtFGlLy~ 16 (88)
T PF12058_consen 4 TYLNHPTFGLLYR 16 (88)
T ss_dssp -EEEETTTEEEEE
T ss_pred ccccCCccchhee
Confidence 5899999865543
No 20
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=39.76 E-value=6.8 Score=31.85 Aligned_cols=32 Identities=31% Similarity=0.576 Sum_probs=23.1
Q ss_pred cccccccccccCCCceEEEEEcCCcce-EEEEe
Q 042730 12 KNTEKCSQATIVPKGHFVVYVGETTKK-RFVLP 43 (88)
Q Consensus 12 ~~~~~~~~~~~vpkG~~~VyVG~e~~~-RfvVp 43 (88)
++-|+....--+|-|.|++|||-+.-. .|.||
T Consensus 79 ~~~l~~~n~i~iPh~sf~~y~g~~~ie~~~~vp 111 (366)
T PRK13277 79 QDELREENAIFVPNRSFAVYVGYDAIENEFKVP 111 (366)
T ss_pred HHHHHHCCeEEecCCCeEEEecHHHHhhcCCCC
Confidence 333445566789999999999975423 68888
No 21
>PF08141 SspH: Small acid-soluble spore protein H family; InterPro: IPR012610 This family consists of the small acid-soluble spore proteins (SASP) of the H type (sspH). SspH are unique to spores of Bacillus subtilis and are expressed only in the forespore compartment during sporulation of this organism. The sspH genes are monocistronic and are recognised by the forespore-specific sigma factor for RNA polymerase - sigma-G. The specific role of this protein is unclear but is thought to play a role in sporulation under conditions different from that of the common laboratory tests of spore properties [].; GO: 0030436 asexual sporulation, 0042601 endospore-forming forespore
Probab=38.12 E-value=25 Score=21.51 Aligned_cols=41 Identities=12% Similarity=0.209 Sum_probs=24.1
Q ss_pred hhhccccccccccccCCCceEEEEE--------------cCCcceEEEEeccccC
Q 042730 8 IVSNKNTEKCSQATIVPKGHFVVYV--------------GETTKKRFVLPISYLK 48 (88)
Q Consensus 8 ~~~~~~~~~~~~~~~vpkG~~~VyV--------------G~e~~~RfvVp~~~L~ 48 (88)
..|||+|+.+.....|-=--.|||. .+.-.++..||++-|.
T Consensus 3 ~~RAkeI~~S~~~i~V~y~G~pV~Ie~vde~~~tA~V~~l~~p~~~~~Vpv~~L~ 57 (58)
T PF08141_consen 3 VQRAKEIAESPDMIEVTYNGVPVWIEHVDEENGTARVHPLDNPEEEQEVPVNDLE 57 (58)
T ss_pred HHHHHHHHcCCceEEEEECCEEEEEEEEcCCCCeEEEEECCCCCcEEEEEHHHcc
Confidence 3578999876554444433355554 3222377888877653
No 22
>PRK01625 sspH acid-soluble spore protein H; Provisional
Probab=37.79 E-value=25 Score=21.70 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=26.0
Q ss_pred hhhccccccccccccCCCceEEEEEc--------------CCcceEEEEeccccC
Q 042730 8 IVSNKNTEKCSQATIVPKGHFVVYVG--------------ETTKKRFVLPISYLK 48 (88)
Q Consensus 8 ~~~~~~~~~~~~~~~vpkG~~~VyVG--------------~e~~~RfvVp~~~L~ 48 (88)
..|||+|+.+.....|-=--.|||.- ..-.+++.||++-|.
T Consensus 3 ~~RAkeI~~S~~~i~V~Y~G~pV~Iq~vde~~~tA~V~~~~~p~~e~~Vpv~~L~ 57 (59)
T PRK01625 3 VKRVKQILSSSSRIDVTYEGVPVWIESCDEQSGVAQVYDVSNPGESVHVDVTALE 57 (59)
T ss_pred HHHHHHHHcCCcceEEEECCEEEEEEEEcCCCCeEEEEecCCCCcEEEEEHHHcc
Confidence 45789998876666665556666662 111367888876553
No 23
>TIGR02861 SASP_H small acid-soluble spore protein, H-type. This model is derived from pfam08141 but has been expanded to include in the seed corresponding proteins from three species of Clostridium. Members of this family should occur only in endospore-forming bacteria, typically with two members per genome, but may be absent from the genomes of some endospore-forming bacteria. SspH (previously designated YfjU) was shown to be expressed specifically in spores of Bacillus subtilis.
Probab=37.43 E-value=27 Score=21.37 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=25.1
Q ss_pred hhhccccccccccccCCCceEEEEEc--------------CCcceEEEEecccc
Q 042730 8 IVSNKNTEKCSQATIVPKGHFVVYVG--------------ETTKKRFVLPISYL 47 (88)
Q Consensus 8 ~~~~~~~~~~~~~~~vpkG~~~VyVG--------------~e~~~RfvVp~~~L 47 (88)
+.|||||+.+..-..|-=--.|||.- ..-.+++.||++-|
T Consensus 3 ~~RAkeI~~S~~~i~V~Y~G~pV~Ie~vde~~~tA~V~~l~~p~~~~~Vpv~~L 56 (58)
T TIGR02861 3 VQRAKEIAASPEMINVTYKGVPVYIEHVDEQSGTARVYSLDNPGKEQDVPVNDL 56 (58)
T ss_pred HHHHHHHHcCccceEEEECCEEEEEEEEcCCCCeEEEEECCCCCcEEEEEHHHc
Confidence 45789998776655555555666662 21126778887655
No 24
>PRK03174 sspH acid-soluble spore protein H; Provisional
Probab=36.06 E-value=26 Score=21.61 Aligned_cols=40 Identities=10% Similarity=0.238 Sum_probs=25.3
Q ss_pred hhhccccccccccccCCCceEEEEEc--------------CCcceEEEEecccc
Q 042730 8 IVSNKNTEKCSQATIVPKGHFVVYVG--------------ETTKKRFVLPISYL 47 (88)
Q Consensus 8 ~~~~~~~~~~~~~~~vpkG~~~VyVG--------------~e~~~RfvVp~~~L 47 (88)
+.|||+|+.+..-..|-=--.|||.- ++-.+++.||++-|
T Consensus 3 ~~RAkeI~~Sp~~i~VtY~G~pV~Ie~vde~~~tA~I~~l~~p~~~~~Vpv~~L 56 (59)
T PRK03174 3 TQRAQEIAESPDMANVTYNGVPIYIQHVDEQNGTARIHPLDNPNQEQSVPLASL 56 (59)
T ss_pred HHHHHHHHcCccceEEEECCEEEEEEEEcCCCCeEEEEECCCCCcEEEEEHHHh
Confidence 45789998876666666566677762 11126777777654
No 25
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional
Probab=35.30 E-value=1.1e+02 Score=23.44 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=39.5
Q ss_pred CceEEEEEcCCcceEEEEeccccCchHHHHHHhhhhhhcCCccC--------------CCceEeeCCHHHHHHHHhc
Q 042730 25 KGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHP--------------MGGLTIPCSEEVFMDLISS 87 (88)
Q Consensus 25 kG~~~VyVG~e~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~--------------~G~L~IPC~~~~F~~vl~~ 87 (88)
.|++.|.-.++. .++.+.++.-.-+....++.+...-|+.+.+ .-+|++|...+-||.+++.
T Consensus 45 ~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~~~~~vrr~fdLd~d~~~i~~~L~~~~~~~~GlR~p~~~d~fE~lv~a 120 (283)
T PRK10308 45 RGVVTVIPDIAR-HTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGKLGAARPGLRLPGSVDAFEQGVRA 120 (283)
T ss_pred cEEEEEEEcCCC-ceEEEEEcCCccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHH
Confidence 466666654433 4566655553334555667766666666543 2469999999999988764
No 26
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=35.21 E-value=17 Score=29.66 Aligned_cols=30 Identities=33% Similarity=0.671 Sum_probs=22.0
Q ss_pred ccccccccCCCceEEEEEcCC-cceEEEEec
Q 042730 15 EKCSQATIVPKGHFVVYVGET-TKKRFVLPI 44 (88)
Q Consensus 15 ~~~~~~~~vpkG~~~VyVG~e-~~~RfvVp~ 44 (88)
|+....--+|-|.|++|||-+ ....|.||+
T Consensus 82 L~~~n~I~IP~gSfv~Y~G~d~ie~~~~vP~ 112 (361)
T COG1759 82 LRELNAIFIPHGSFVAYVGYDGIENEFEVPM 112 (361)
T ss_pred HHHcCeEEecCCceEEEecchhhhhcccCcc
Confidence 344566779999999999964 235677774
No 27
>PF11876 DUF3396: Protein of unknown function (DUF3396); InterPro: IPR021815 This family of proteins are functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 302 to 382 amino acids in length.
Probab=35.02 E-value=33 Score=25.39 Aligned_cols=38 Identities=26% Similarity=0.490 Sum_probs=29.8
Q ss_pred eEEEEeccccCch--HHHHHHhhhhhhcCCccCCCceEee
Q 042730 38 KRFVLPISYLKHP--SFQNLLSQTEEEFGFDHPMGGLTIP 75 (88)
Q Consensus 38 ~RfvVp~~~L~hP--~F~~LL~~aeeEfG~~~~~G~L~IP 75 (88)
=+|.+|++||+.+ .|++|+...++.+...|..+++.+-
T Consensus 25 l~f~~P~~~l~~~~~~~~~l~~~~a~~L~~~~G~aGl~~~ 64 (208)
T PF11876_consen 25 LSFSLPLEWLEEGPGHFRALFLELAERLPPSHGYAGLAFN 64 (208)
T ss_pred EEEEeCHHHHhcCcHHHHHHHHHHHHHCCCCeEeeEEEEe
Confidence 5899999999872 4999999999988777654566543
No 28
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=31.02 E-value=59 Score=23.57 Aligned_cols=36 Identities=25% Similarity=0.541 Sum_probs=28.4
Q ss_pred ceEEEEEcCCcceEEEEeccccCchHHHHHHhhhhhhcCCccC
Q 042730 26 GHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHP 68 (88)
Q Consensus 26 G~~~VyVG~e~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~ 68 (88)
|+++++||.+-..+ .+-|...+|++...++++.+.+
T Consensus 1 g~lvlFiGAG~S~~-------~glP~W~~Ll~~l~~~~~~~~~ 36 (242)
T cd01406 1 GRVVIFVGAGVSVS-------SGLPDWKTLLDEIASELGLEID 36 (242)
T ss_pred CCEEEEecCccccc-------cCCCChHHHHHHHHHHcCCccc
Confidence 78899999863222 4779999999999999987643
No 29
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=28.90 E-value=1.3e+02 Score=17.74 Aligned_cols=33 Identities=39% Similarity=0.650 Sum_probs=25.5
Q ss_pred EEEcCCcceEEEEeccccCchHHHHHHhhhhhhcCCc
Q 042730 30 VYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFD 66 (88)
Q Consensus 30 VyVG~e~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~ 66 (88)
++-+++. +||.+|. .++.|.+|..+-++.|+..
T Consensus 5 ~~~~~~~-~~~~~~~---~~~s~~~L~~~i~~~~~~~ 37 (81)
T cd05992 5 VKYGGEI-RRFVVVS---RSISFEDLRSKIAEKFGLD 37 (81)
T ss_pred EEecCCC-EEEEEec---CCCCHHHHHHHHHHHhCCC
Confidence 3444444 9999997 7888999999988888874
No 30
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=28.37 E-value=61 Score=23.92 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=23.7
Q ss_pred hHHHHHHhhhhhhcCCccCCCceEeeCCHH
Q 042730 50 PSFQNLLSQTEEEFGFDHPMGGLTIPCSEE 79 (88)
Q Consensus 50 P~F~~LL~~aeeEfG~~~~~G~L~IPC~~~ 79 (88)
-.++.|.+++++-.|...++-.+++|++..
T Consensus 44 ~~l~~l~~~a~~~~g~~~~~vvisVP~~~~ 73 (239)
T TIGR02529 44 EIVRRLKDTLEQKLGIELTHAATAIPPGTI 73 (239)
T ss_pred HHHHHHHHHHHHHhCCCcCcEEEEECCCCC
Confidence 358889999888888876657899998653
No 31
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=27.08 E-value=88 Score=25.13 Aligned_cols=47 Identities=21% Similarity=0.397 Sum_probs=34.0
Q ss_pred ceEEEEeccccCc--hHHHHHHhh---hhhhcCCccCCCceEeeCCHHHHHHHHhc
Q 042730 37 KKRFVLPISYLKH--PSFQNLLSQ---TEEEFGFDHPMGGLTIPCSEEVFMDLISS 87 (88)
Q Consensus 37 ~~RfvVp~~~L~h--P~F~~LL~~---aeeEfG~~~~~G~L~IPC~~~~F~~vl~~ 87 (88)
.+=|.-|.+.|-. ..|++.|.. ..++.. + =.|.+-||+..|++++..
T Consensus 13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~---~-idisVhCDv~iF~WLm~y 64 (317)
T PF11822_consen 13 KRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWE---E-IDISVHCDVHIFEWLMRY 64 (317)
T ss_pred ceeeeccHHHHHHhhHHHHHHHhhcccccCcCC---C-cceEEecChhHHHHHHHH
Confidence 4679999888854 559999965 333322 2 348888999999999863
No 32
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=26.55 E-value=76 Score=26.27 Aligned_cols=51 Identities=18% Similarity=0.398 Sum_probs=34.6
Q ss_pred hhhhccccccccccccCC--CceEEEEEcCCcceEEEEeccccCchHHHHHHhhh-hh-hcCCcc
Q 042730 7 KIVSNKNTEKCSQATIVP--KGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQT-EE-EFGFDH 67 (88)
Q Consensus 7 ~~~~~~~~~~~~~~~~vp--kG~~~VyVG~e~~~RfvVp~~~L~hP~F~~LL~~a-ee-EfG~~~ 67 (88)
.+.+.+++ .|-|....+ +..+|++|.|-+ |..| |...+=|++. +. .|||..
T Consensus 6 ~~~~r~~t-~s~KWd~~~g~~DvlPmWVADMD---f~~p------p~i~~Al~~rvdhGvfGY~~ 60 (388)
T COG1168 6 TVIERLGT-NSLKWDAHPGNEDVLPMWVADMD---FPTP------PEIIEALRERVDHGVFGYPY 60 (388)
T ss_pred hhhhhcCC-CceeccccCCCCCcceeeeeccc---CCCC------HHHHHHHHHHHhcCCCCCCC
Confidence 34555555 466788888 999999999855 6666 5555555554 44 599974
No 33
>PRK05084 xerS site-specific tyrosine recombinase XerS; Reviewed
Probab=26.28 E-value=2.4e+02 Score=21.01 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=27.7
Q ss_pred CCceEEEEEcCCcceEEEEeccccCchHHHHHHhhhhhhcCCccCCCceEe--------eCCHHHHHHHHh
Q 042730 24 PKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLTI--------PCSEEVFMDLIS 86 (88)
Q Consensus 24 pkG~~~VyVG~e~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~I--------PC~~~~F~~vl~ 86 (88)
..|.+.|. ++.. +.-.||+.----..+++.++.....++...+++.|-+ |++...+.++++
T Consensus 225 ~~~~l~v~-~K~~-~~r~vpl~~~~~~~l~~~~~~~~~~~~~~~~~~~lF~~~~~~~~~~~~~~~i~~~~~ 293 (357)
T PRK05084 225 KQMTIDVT-RKGG-KRDSVNIAPFALPYLEEYLKIRASRYKAEKQEKALFLTKYRGKPNRISARAIEKMVA 293 (357)
T ss_pred CCCEEEEE-ecCC-ceeEEEECHHHHHHHHHHHHHhhhhccCCCCCcceEeecCCCCCCCCCHHHHHHHHH
Confidence 45666665 4443 4457786422223344444333333443322244433 445555555443
No 34
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=26.00 E-value=1.5e+02 Score=17.56 Aligned_cols=45 Identities=33% Similarity=0.482 Sum_probs=29.1
Q ss_pred EEEcCCcceE-EEEeccccCchHHHHHHhhhhhhcCCc----------cCCCceEeeCCHH
Q 042730 30 VYVGETTKKR-FVLPISYLKHPSFQNLLSQTEEEFGFD----------HPMGGLTIPCSEE 79 (88)
Q Consensus 30 VyVG~e~~~R-fvVp~~~L~hP~F~~LL~~aeeEfG~~----------~~~G~L~IPC~~~ 79 (88)
++-+++. +| +.+| ..+.|.+|.++.++.||.. .++-.++|.++.+
T Consensus 6 ~~~~~~~-~~~~~~~----~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~D 61 (84)
T PF00564_consen 6 VRYGGDI-RRIISLP----SDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDED 61 (84)
T ss_dssp EEETTEE-EEEEEEC----STSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHHH
T ss_pred EEECCee-EEEEEcC----CCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHHH
Confidence 3445443 55 4444 5579999999999999883 2323567777743
No 35
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.62 E-value=82 Score=24.63 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=38.6
Q ss_pred CCCceEEEEEcCCcceEEEEeccccCchHHHHHHhhhhhhcCCccCCCceEee--CCHHHHHHHHhcC
Q 042730 23 VPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLTIP--CSEEVFMDLISSL 88 (88)
Q Consensus 23 vpkG~~~VyVG~e~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~F~~vl~~l 88 (88)
.+.+...|.||++. ..-...+--.++.++.|+..+ .+.+| ++.+.|.+.+..|
T Consensus 31 ~~p~Laii~vg~d~-----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~~l~~~I~~l 85 (285)
T PRK14189 31 HQPGLAVILVGDNP-----------ASQVYVRNKVKACEDNGFHSL--KDRYPADLSEAELLARIDEL 85 (285)
T ss_pred CCCeEEEEEeCCCc-----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 45588899999742 124566777788899998864 56778 7788888877643
No 36
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=25.41 E-value=87 Score=19.27 Aligned_cols=33 Identities=21% Similarity=0.482 Sum_probs=19.6
Q ss_pred eEEEEeccccCchHHHHHHhhhhhhcCCccCCCce
Q 042730 38 KRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGL 72 (88)
Q Consensus 38 ~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L 72 (88)
+|+.|++.= .-.+.+.|++|-+.||++.+.+.|
T Consensus 7 rr~~vkvtp--~~~l~~VL~eac~k~~l~~~~~~L 39 (65)
T PF11470_consen 7 RRFKVKVTP--NTTLNQVLEEACKKFGLDPSSYDL 39 (65)
T ss_dssp -EEEE---T--TSBHHHHHHHHHHHTT--GGG-EE
T ss_pred cEEEEEECC--CCCHHHHHHHHHHHcCCCccceEE
Confidence 777777653 336889999999999998654444
No 37
>PF05194 UreE_C: UreE urease accessory protein, C-terminal domain; InterPro: IPR007864 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The C-terminal domain of this protein is the metal-binding region, which can bind up to six Ni molecules per dimer. Most members of this group contain a histidine-rich C-terminal motif that is involved in, but not solely responsible for, binding nickel ions in K. aerogenes UreE []. However, internal ligands, not the histidine residues at the C terminus, are necessary for UreE to assist in urease activation in K. aerogenes [], even though the truncated protein lacking the His-rich region binds two nickel ions instead of six. In H. pylori and some other organisms, the terminal histidine-rich binding sites are absent, but the internal histidine sites are present, and the latter probably function as nickel donors. Deletion analysis shows that this domain alone is sufficient for metal-binding and activation of urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=24.81 E-value=96 Score=19.49 Aligned_cols=27 Identities=19% Similarity=0.484 Sum_probs=17.3
Q ss_pred ceEEEEEcCCcceEEEEeccccCchHHHHHHhhh
Q 042730 26 GHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQT 59 (88)
Q Consensus 26 G~~~VyVG~e~~~RfvVp~~~L~hP~F~~LL~~a 59 (88)
-|+|++++++ +..|| ..+.+.++|++-
T Consensus 25 rH~p~~i~~~---~l~v~----~d~~l~~~L~~l 51 (87)
T PF05194_consen 25 RHWPLFIEED---ELYVP----YDHVLEELLRKL 51 (87)
T ss_dssp TT--EEEETT---EEEEE------HHHHHHHHHT
T ss_pred CccceEEcCC---EEEec----CcHHHHHHHHHC
Confidence 4789999974 58888 567778888763
No 38
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=24.47 E-value=55 Score=22.18 Aligned_cols=17 Identities=35% Similarity=0.788 Sum_probs=12.0
Q ss_pred CceEeeCC----HHHHHHHHh
Q 042730 70 GGLTIPCS----EEVFMDLIS 86 (88)
Q Consensus 70 G~L~IPC~----~~~F~~vl~ 86 (88)
-.|++||+ .+-|+.+|+
T Consensus 13 q~lrv~ce~p~~~d~~q~Lls 33 (96)
T PF15387_consen 13 QRLRVPCEAPGDADPFQGLLS 33 (96)
T ss_pred ceEEEeeecCCCcccHHHHHH
Confidence 46888887 466777664
No 39
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.55 E-value=39 Score=23.99 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=16.1
Q ss_pred hhhcCCccCCC-ceEeeCCHHHHHHHH
Q 042730 60 EEEFGFDHPMG-GLTIPCSEEVFMDLI 85 (88)
Q Consensus 60 eeEfG~~~~~G-~L~IPC~~~~F~~vl 85 (88)
||||||+.+++ .=.|-|-.+.++.|-
T Consensus 98 EEEFgiEIpd~dAdki~t~~da~~yI~ 124 (131)
T KOG1748|consen 98 EEEFGIEIPDEDADKIKTVRDAADYIA 124 (131)
T ss_pred HHHhCCccCcchhhhhCCHHHHHHHHH
Confidence 89999987532 334555555555543
No 40
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=22.99 E-value=1.3e+02 Score=19.18 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=17.1
Q ss_pred cCchHHHHHH-h---hhhhhcCCccCCCceE
Q 042730 47 LKHPSFQNLL-S---QTEEEFGFDHPMGGLT 73 (88)
Q Consensus 47 L~hP~F~~LL-~---~aeeEfG~~~~~G~L~ 73 (88)
-..|.|++.| + .+=+||||+.+ ..+.
T Consensus 14 w~Dp~Fr~~Ll~DPraaL~e~G~~~P-~~~~ 43 (77)
T TIGR03793 14 WEDEAFKQALLTNPKEALEREGVQVP-AEVE 43 (77)
T ss_pred HcCHHHHHHHHHCHHHHHHHhCCCCC-CceE
Confidence 3568899855 4 44567899876 4443
No 41
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.33 E-value=95 Score=24.50 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=38.3
Q ss_pred cCCCceEEEEEcCCcceEEEEeccccCchHHHHHHhhhhhhcCCccCCCceEee--CCHHHHHHHHhcC
Q 042730 22 IVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLTIP--CSEEVFMDLISSL 88 (88)
Q Consensus 22 ~vpkG~~~VyVG~e~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~F~~vl~~l 88 (88)
..+.+...+.||++. ..-.....-.+++|+.|.... .+.+| ++.+.+...+..|
T Consensus 31 g~~P~LaiI~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~~l~~~I~~l 86 (301)
T PRK14194 31 GIEPALAVILVGNDP-----------ASQVYVRNKILRAEEAGIRSL--EHRLPADTSQARLLALIAEL 86 (301)
T ss_pred CCCCeEEEEEeCCCh-----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 345688999999742 123466677788999998864 56777 7788888777543
No 42
>COG4862 MecA Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion]
Probab=21.97 E-value=65 Score=24.83 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.7
Q ss_pred chHHHHHHhhhhhhcCCccCCCceEee
Q 042730 49 HPSFQNLLSQTEEEFGFDHPMGGLTIP 75 (88)
Q Consensus 49 hP~F~~LL~~aeeEfG~~~~~G~L~IP 75 (88)
|-.|-++++.+.+|-+|..+ |+|+|-
T Consensus 38 EE~F~~mMdEl~~ee~F~~~-GpL~iq 63 (224)
T COG4862 38 EELFYEMMDELNLEEDFKDE-GPLWIQ 63 (224)
T ss_pred HHHHHHHHHhcCCccccccC-CceEEE
Confidence 56799999999999999876 999874
No 43
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.88 E-value=93 Score=24.33 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=37.8
Q ss_pred CCCceEEEEEcCCcceEEEEeccccCchHHHHHHhhhhhhcCCccCCCceEee--CCHHHHHHHHhcC
Q 042730 23 VPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLTIP--CSEEVFMDLISSL 88 (88)
Q Consensus 23 vpkG~~~VyVG~e~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~F~~vl~~l 88 (88)
+..+...|.||++. ..-.....-.+++++.|++.+ .+.+| ++.+.|...+..|
T Consensus 29 ~~P~Laii~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~~l~~~I~~l 83 (282)
T PRK14166 29 IESCLAVILVGDNP-----------ASQTYVKSKAKACEECGIKSL--VYHLNENTTQNELLALINTL 83 (282)
T ss_pred CCceEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 45588899999742 123456677788899999864 56777 7788888777543
No 44
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=21.49 E-value=60 Score=28.76 Aligned_cols=35 Identities=31% Similarity=0.396 Sum_probs=25.5
Q ss_pred eEEEEEcCCcceEEEEeccccCchHHHHHHhhhhhhcCCccCCCceEe
Q 042730 27 HFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLTI 74 (88)
Q Consensus 27 ~~~VyVG~e~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~I 74 (88)
.+-=|||+.+ .-.+.|...||||+.-..++.+|.|
T Consensus 293 IL~KYVGeSE-------------~NvR~LFaDAEeE~r~~g~~SgLHI 327 (744)
T KOG0741|consen 293 ILNKYVGESE-------------ENVRKLFADAEEEQRRLGANSGLHI 327 (744)
T ss_pred HHHHhhcccH-------------HHHHHHHHhHHHHHHhhCccCCceE
Confidence 3455899854 6789999999999965544556654
No 45
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=21.06 E-value=0.93 Score=31.88 Aligned_cols=29 Identities=41% Similarity=0.724 Sum_probs=16.5
Q ss_pred cccccccCCCceEEEEEcCCcc-eEEEEec
Q 042730 16 KCSQATIVPKGHFVVYVGETTK-KRFVLPI 44 (88)
Q Consensus 16 ~~~~~~~vpkG~~~VyVG~e~~-~RfvVp~ 44 (88)
+....--||-|.|++|||-+.- ++|.||+
T Consensus 63 ~~~N~I~VPhgSfv~Y~G~d~ie~~~~vP~ 92 (124)
T PF06849_consen 63 REMNAIFVPHGSFVAYVGYDRIENEFKVPI 92 (124)
T ss_dssp HHTTEEE--BTTHHHHH-HHHHHHT-SS-E
T ss_pred HHCCeEEecCCCeeEeecHHHHhhcCCCCe
Confidence 3456678999999999996432 3366664
No 46
>PF12518 DUF3721: Protein of unknown function; InterPro: IPR022196 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length. There is a conserved WMPC sequence motif. There are two completely conserved residues (A and C) that may be functionally important.
Probab=21.01 E-value=60 Score=18.04 Aligned_cols=22 Identities=36% Similarity=0.759 Sum_probs=16.2
Q ss_pred hhhhhhcCCc--cCCCceEeeCCH
Q 042730 57 SQTEEEFGFD--HPMGGLTIPCSE 78 (88)
Q Consensus 57 ~~aeeEfG~~--~~~G~L~IPC~~ 78 (88)
++.+.++|.. |+||....||+.
T Consensus 8 e~~A~~~GC~G~H~mg~~WMPC~~ 31 (34)
T PF12518_consen 8 EKRAKELGCKGAHKMGDKWMPCSN 31 (34)
T ss_pred HHHHHHcCCcchhhccCccccCcc
Confidence 3445678876 568999999974
No 47
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.64 E-value=1.9e+02 Score=22.70 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=38.5
Q ss_pred CCCceEEEEEcCCcceEEEEeccccCchHHHHHHhhhhhhcCCccCCCceEee--CCHHHHHHHHhcC
Q 042730 23 VPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLTIP--CSEEVFMDLISSL 88 (88)
Q Consensus 23 vpkG~~~VyVG~e~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~F~~vl~~l 88 (88)
.+.+...|+||++. ..-.....-.+++|+.|++.+ .+.+| ++.+.|...+..|
T Consensus 31 ~~P~LaiI~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~el~~~I~~l 85 (284)
T PRK14193 31 ITPGLGTVLVGDDP-----------GSQAYVRGKHRDCAEVGITSI--RRDLPADATQEELNAVIDEL 85 (284)
T ss_pred CCceEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 45588889999842 124566777888999999864 56777 8888888877643
No 48
>cd00800 INT_Lambda_C Lambda integrase, C-terminal catalytic domain. Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.
Probab=20.33 E-value=2.6e+02 Score=18.21 Aligned_cols=48 Identities=15% Similarity=0.356 Sum_probs=26.7
Q ss_pred cccchhhhhccccccccccccCCCceEEEEEcCCcceEEEEeccccCchHHHHHHhhhhh
Q 042730 2 GFRLLKIVSNKNTEKCSQATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEE 61 (88)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~vpkG~~~VyVG~e~~~RfvVp~~~L~hP~F~~LL~~aee 61 (88)
|.|++++..+ +..++-.+.+.+.-++.. ++..||++ |...++|++..+
T Consensus 32 GlR~~E~~~l-------~~~di~~~~~~i~~~K~~-~~r~vpl~----~~~~~~l~~~~~ 79 (162)
T cd00800 32 GQRVGDVLRM-------KWSDIDDDGLHIEQSKTG-AKLAIPLS----PSLREVIERCRD 79 (162)
T ss_pred cCCHHHHHhC-------cHHHccCCeEEEEecCcC-CeeEEECC----HHHHHHHHHHHh
Confidence 4555555543 233444556665555443 55678874 666677766544
No 49
>PF01584 CheW: CheW-like domain; InterPro: IPR002545 CheW proteins are part of the chemotaxis signalling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flagellar rotation. This family includes CheW and other related proteins that are involved in chemotaxis. The CheW-like regulatory domain in CheA [] binds to CheW, suggesting that these domains can interact with each other.; GO: 0004871 signal transducer activity, 0006935 chemotaxis, 0007165 signal transduction, 0005622 intracellular; PDB: 2HO9_A 2CH4_A 1B3Q_A 3UR1_A 1K0S_A 2QDL_B.
Probab=20.03 E-value=1.4e+02 Score=18.76 Aligned_cols=20 Identities=25% Similarity=0.560 Sum_probs=14.7
Q ss_pred eEEEEEcCCcceEEEEeccccCc
Q 042730 27 HFVVYVGETTKKRFVLPISYLKH 49 (88)
Q Consensus 27 ~~~VyVG~e~~~RfvVp~~~L~h 49 (88)
++-+++|+ +||.+|++++..
T Consensus 2 ~l~f~~g~---~~~aip~~~V~e 21 (138)
T PF01584_consen 2 YLLFRLGG---ERFAIPLSDVVE 21 (138)
T ss_dssp EEEEEETT---EEEEEEGGGEEE
T ss_pred EEEEEECC---EEEEEEHHHeeE
Confidence 46677885 779999887643
Done!