Query 042730
Match_columns 88
No_of_seqs 112 out of 631
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 15:26:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042730.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042730hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1und_A Advillin, P92; actin bi 67.9 2.1 7.2E-05 23.3 1.2 19 45-63 1-19 (37)
2 2al3_A TUG long isoform; TUG U 63.7 9.4 0.00032 24.4 3.9 45 26-73 9-53 (90)
3 1s1g_A Potassium voltage-gated 58.1 8.7 0.0003 25.2 3.1 60 23-87 10-70 (124)
4 2vpk_A Myoneurin; transcriptio 51.7 19 0.00065 21.8 3.7 49 28-87 25-78 (116)
5 2nz0_B Potassium voltage-gated 50.9 11 0.00038 25.3 2.7 60 23-87 32-92 (140)
6 3drz_A BTB/POZ domain-containi 50.1 43 0.0015 20.8 5.6 58 25-87 5-67 (107)
7 1y74_B MLIN-2/CASK, peripheral 49.2 6 0.0002 22.0 1.0 20 45-64 26-49 (50)
8 1r29_A B-cell lymphoma 6 prote 47.7 21 0.00072 22.0 3.5 52 28-87 32-87 (127)
9 3n5b_B ASR0485 protein; PII, P 45.8 3 0.0001 28.0 -0.8 29 20-57 12-40 (112)
10 1yu8_X Villin; alpha helix, 3- 44.7 8.3 0.00028 23.4 1.2 20 45-64 31-50 (67)
11 1nn7_A Potassium channel KV4.2 44.2 6.2 0.00021 25.0 0.6 55 28-87 2-57 (105)
12 1qzp_A Dematin; villin headpie 42.8 7.3 0.00025 23.6 0.7 21 44-64 31-51 (68)
13 2xko_C PIPX, global nitrogen r 42.7 3.1 0.00011 26.9 -1.1 12 45-56 5-16 (89)
14 1ujs_A Actin-binding LIM prote 40.4 11 0.00038 24.0 1.3 20 45-64 46-65 (88)
15 2k6m_S Supervillin; SVHP, HP, 40.3 9.1 0.00031 23.2 0.8 21 44-64 30-50 (67)
16 3ga1_A Nucleus accumbens-assoc 39.4 38 0.0013 20.9 3.8 49 28-87 36-88 (129)
17 2vkp_A BTB/POZ domain-containi 35.2 50 0.0017 19.4 3.7 55 28-87 11-69 (109)
18 1z3x_A Putative cytidyltransfe 33.5 1.8 6.2E-05 32.2 -3.7 29 21-52 208-236 (238)
19 1y6i_A Mg-chelatase cofactor G 33.1 2.3 8E-05 31.5 -3.2 30 21-53 200-229 (233)
20 2if5_A Zinc finger and BTB dom 31.8 63 0.0022 19.4 3.9 53 28-87 28-83 (120)
21 3pmi_A PWWP domain-containing 30.6 18 0.00062 24.8 1.2 27 38-64 49-78 (134)
22 1wy3_A Villin; structural prot 30.6 19 0.00066 19.1 1.1 17 47-63 1-17 (35)
23 3b84_A Zinc finger and BTB dom 29.1 70 0.0024 19.4 3.7 49 28-87 27-78 (119)
24 3ohu_A Transcription regulator 28.0 51 0.0017 20.1 2.9 51 28-87 35-89 (125)
25 2lmc_A Bacterial RNA polymeras 27.7 43 0.0015 21.2 2.5 14 52-65 56-69 (84)
26 2lkt_A Retinoic acid receptor 23.9 34 0.0012 21.6 1.6 9 27-35 23-31 (125)
27 1buo_A POZ domain, protein (pr 23.5 89 0.0031 18.9 3.5 48 28-87 31-81 (121)
28 3qli_A Coenzyme A transferase; 23.3 42 0.0014 26.7 2.2 45 20-65 401-454 (455)
29 3htm_A Speckle-type POZ protei 22.6 98 0.0033 19.5 3.6 53 28-87 37-92 (172)
30 3fkc_A Transcriptional regulat 21.5 1E+02 0.0035 18.7 3.4 48 28-87 34-84 (116)
31 3ezo_A Malonyl COA-acyl carrie 21.5 51 0.0018 24.0 2.3 42 24-66 8-49 (318)
32 1zav_U 50S ribosomal protein L 21.4 49 0.0017 16.9 1.6 13 52-64 18-30 (30)
33 2q81_A MIZ-1 protein; BTB/POZ 20.7 77 0.0026 19.2 2.7 48 28-87 30-80 (119)
34 3p2o_A Bifunctional protein fo 20.5 45 0.0015 24.9 1.8 51 24-87 33-85 (285)
No 1
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=67.85 E-value=2.1 Score=23.31 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=17.2
Q ss_pred cccCchHHHHHHhhhhhhc
Q 042730 45 SYLKHPSFQNLLSQTEEEF 63 (88)
Q Consensus 45 ~~L~hP~F~~LL~~aeeEf 63 (88)
.||+.-.|++++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999998
No 2
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=63.71 E-value=9.4 Score=24.40 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=30.6
Q ss_pred ceEEEEEcCCcceEEEEeccccCchHHHHHHhhhhhhcCCccCCCceE
Q 042730 26 GHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLT 73 (88)
Q Consensus 26 G~~~VyVG~e~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~ 73 (88)
|--.+++.... +|+.|++. ..-.+.++|++|-+.||++.+...|.
T Consensus 9 ~m~v~Vl~~n~-rr~~VKvt--p~t~L~~VL~eaC~K~gl~~~~~~Lk 53 (90)
T 2al3_A 9 GSAVSVLAPNG-RRHTVKVT--PSTVLLQVLEDTCRRQDFNPSEYDLK 53 (90)
T ss_dssp -CCEEEECTTS-CEEEECCC--TTSBHHHHHHHHHHHTTCCGGGCEEE
T ss_pred ccEEEEEcCCC-cEEEEEEC--CCCCHHHHHHHHHHHhCCChhhCeEE
Confidence 33334444433 89999983 34468899999999999986544443
No 3
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=58.07 E-value=8.7 Score=25.20 Aligned_cols=60 Identities=27% Similarity=0.303 Sum_probs=42.9
Q ss_pred CCCceEEEEEcCCcceEEEEeccccC-chHHHHHHhhhhhhcCCccCCCceEeeCCHHHHHHHHhc
Q 042730 23 VPKGHFVVYVGETTKKRFVLPISYLK-HPSFQNLLSQTEEEFGFDHPMGGLTIPCSEEVFMDLISS 87 (88)
Q Consensus 23 vpkG~~~VyVG~e~~~RfvVp~~~L~-hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F~~vl~~ 87 (88)
.....+.+-||. +||.+..+-|. +|. .+|..++...-++.++|.+-|-.|-..|+.||..
T Consensus 10 ~~~~~V~LNVGG---~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnf 70 (124)
T 1s1g_A 10 RQDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNF 70 (124)
T ss_dssp --CCEEEEEETT---EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHH
T ss_pred CCCCEEEEEeCC---EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHH
Confidence 345678899994 89999988764 332 3454455444455556999999999999999974
No 4
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=51.73 E-value=19 Score=21.84 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=36.2
Q ss_pred EEEEEcCCcceEEEEecccc--CchHHHHHHhhhhhhcCCccCCCceEee---CCHHHHHHHHhc
Q 042730 28 FVVYVGETTKKRFVLPISYL--KHPSFQNLLSQTEEEFGFDHPMGGLTIP---CSEEVFMDLISS 87 (88)
Q Consensus 28 ~~VyVG~e~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IP---C~~~~F~~vl~~ 87 (88)
+.+.||+ ++|-+.-..| ..|.|++++... . + ..+.|+ .+.+.|+.++..
T Consensus 25 v~l~v~~---~~~~aHk~vLaa~S~yF~~~f~~~------~-~-~~i~l~~~~~~~~~f~~ll~~ 78 (116)
T 2vpk_A 25 CTIVIGE---FQFKAHRNVLASFSEYFGAIYRST------S-E-NNVFLDQSQVKADGFQKLLEF 78 (116)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTTC------C-C-SCEECCTTTCCHHHHHHHHHH
T ss_pred EEEEECC---EEEeccHHHHhhcCHHHHHHHcCC------C-C-CeEEeecCCCCHHHHHHHHHH
Confidence 3456663 6788887777 579999999765 2 2 678888 688999998863
No 5
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=50.86 E-value=11 Score=25.28 Aligned_cols=60 Identities=27% Similarity=0.311 Sum_probs=44.0
Q ss_pred CCCceEEEEEcCCcceEEEEecccc-CchHHHHHHhhhhhhcCCccCCCceEeeCCHHHHHHHHhc
Q 042730 23 VPKGHFVVYVGETTKKRFVLPISYL-KHPSFQNLLSQTEEEFGFDHPMGGLTIPCSEEVFMDLISS 87 (88)
Q Consensus 23 vpkG~~~VyVG~e~~~RfvVp~~~L-~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F~~vl~~ 87 (88)
.....+.+-||. +||.+..+-| ++|. .+|..++...-++.++|.+-|-.|-..|+.||..
T Consensus 32 ~~~~~V~LNVGG---~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnf 92 (140)
T 2nz0_B 32 RQDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNF 92 (140)
T ss_dssp TCCCEEEEEETT---EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHH
T ss_pred CCCCEEEEEECC---EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHH
Confidence 356788999994 8999998766 3342 2454455444555556999999999999999974
No 6
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=50.10 E-value=43 Score=20.76 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=41.0
Q ss_pred CceEEEEEcCCcceEEEEeccccC-ch--HHHHHHhhhhhhcC--CccCCCceEeeCCHHHHHHHHhc
Q 042730 25 KGHFVVYVGETTKKRFVLPISYLK-HP--SFQNLLSQTEEEFG--FDHPMGGLTIPCSEEVFMDLISS 87 (88)
Q Consensus 25 kG~~~VyVG~e~~~RfvVp~~~L~-hP--~F~~LL~~aeeEfG--~~~~~G~L~IPC~~~~F~~vl~~ 87 (88)
...+.+-||. ++|.+..+-|. +| .|..+.... .++. .+. +|.+-|-.|...|+.||..
T Consensus 5 ~~~v~LNVGG---~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~-~~~~fiDRdp~~F~~IL~~ 67 (107)
T 3drz_A 5 SKWVRLNVGG---TYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDE-TGAYLIDRDPTYFGPVLNY 67 (107)
T ss_dssp CCEEEEEETT---EEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCT-TSCEEECSCHHHHHHHHHH
T ss_pred CCEEEEEECC---EEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCC-CceEEecCChHHHHHHHHH
Confidence 3467888994 89999987775 34 566665422 2332 333 4899999999999999874
No 7
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=49.25 E-value=6 Score=21.96 Aligned_cols=20 Identities=30% Similarity=0.565 Sum_probs=15.3
Q ss_pred cccCchHHHHHHhh----hhhhcC
Q 042730 45 SYLKHPSFQNLLSQ----TEEEFG 64 (88)
Q Consensus 45 ~~L~hP~F~~LL~~----aeeEfG 64 (88)
..|+.|.|++||+- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 56889999999974 566664
No 8
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=47.70 E-value=21 Score=21.99 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=38.4
Q ss_pred EEEEEcCCcceEEEEecccc--CchHHHHHHhhhhhhcCCccCCCceEe-e-CCHHHHHHHHhc
Q 042730 28 FVVYVGETTKKRFVLPISYL--KHPSFQNLLSQTEEEFGFDHPMGGLTI-P-CSEEVFMDLISS 87 (88)
Q Consensus 28 ~~VyVG~e~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~I-P-C~~~~F~~vl~~ 87 (88)
+.+.||+ ++|-+.-..| ..|.|++++...-.| .. ..+.| + .+.+.|+.++..
T Consensus 32 v~l~v~~---~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~-~~i~l~~~~~~~~f~~ll~~ 87 (127)
T 1r29_A 32 VVIVVSR---EQFRAHKTVLMACSGLFYSIFTDQLKR----NL-SVINLDPEINPEGFNILLDF 87 (127)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTSTTTT----TC-SEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECC---EEEehHHHHHHHhCHHHHHHhcCCccC----CC-CEEEeCCCCCHHHHHHHHHH
Confidence 3456663 6788877777 689999999876555 23 68999 4 688999988863
No 9
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=45.85 E-value=3 Score=27.99 Aligned_cols=29 Identities=24% Similarity=0.565 Sum_probs=10.3
Q ss_pred cccCCCceEEEEEcCCcceEEEEeccccCchHHHHHHh
Q 042730 20 ATIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLS 57 (88)
Q Consensus 20 ~~~vpkG~~~VyVG~e~~~RfvVp~~~L~hP~F~~LL~ 57 (88)
+.-||+|..---...| .|||||.|.-|-.
T Consensus 12 ~~~~~~~~~~~~ms~E---------~YLNHPTFGLLyr 40 (112)
T 3n5b_B 12 SGLVPRGSHMNPENSE---------TYINHPTWGLLYR 40 (112)
T ss_dssp --------------CC---------CEEEETTTEEEEE
T ss_pred CCcccCCccCCCcchh---------hhccCCccchhee
Confidence 4567777543322222 3999999975543
No 10
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=44.73 E-value=8.3 Score=23.40 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=18.5
Q ss_pred cccCchHHHHHHhhhhhhcC
Q 042730 45 SYLKHPSFQNLLSQTEEEFG 64 (88)
Q Consensus 45 ~~L~hP~F~~LL~~aeeEfG 64 (88)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
No 11
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=44.23 E-value=6.2 Score=25.00 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=36.5
Q ss_pred EEEEEcCCcceEEEEecccc-CchHHHHHHhhhhhhcCCccCCCceEeeCCHHHHHHHHhc
Q 042730 28 FVVYVGETTKKRFVLPISYL-KHPSFQNLLSQTEEEFGFDHPMGGLTIPCSEEVFMDLISS 87 (88)
Q Consensus 28 ~~VyVG~e~~~RfvVp~~~L-~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F~~vl~~ 87 (88)
+.+-||. +||.+..+-| ++|. .+|..++...-++.++|..-|-.|-..|+.||..
T Consensus 2 V~LNVGG---~~f~t~~~TL~~~p~--s~L~~~~~~~~~~~~~~~~FiDRdp~~F~~ILnf 57 (105)
T 1nn7_A 2 IVLNVSG---TRFQTWQDTLERYPD--TLLGSSERDFFYHPETQQYFFDRDPDIFRHILNF 57 (105)
T ss_dssp EEEEETT---EEEEECHHHHHTSCS--SSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHH
T ss_pred EEEEECC---EEEEEeHHHHhcCCC--ccccccCCcccccCCCCcEEEeCCcHHHHHHHHH
Confidence 4567884 8899887765 3332 2343344433444445899999999999999874
No 12
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=42.76 E-value=7.3 Score=23.61 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.8
Q ss_pred ccccCchHHHHHHhhhhhhcC
Q 042730 44 ISYLKHPSFQNLLSQTEEEFG 64 (88)
Q Consensus 44 ~~~L~hP~F~~LL~~aeeEfG 64 (88)
-.||+.-.|++++.|+.+||-
T Consensus 31 E~yLsdedF~~vFgmsr~eF~ 51 (68)
T 1qzp_A 31 ERHLSAEDFSRVFAMSPEEFG 51 (68)
T ss_dssp GGGBCHHHHHHHSSSCHHHHH
T ss_pred HhhCCHHHHHHHHCcCHHHHH
Confidence 369999999999999999983
No 13
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=42.70 E-value=3.1 Score=26.91 Aligned_cols=12 Identities=50% Similarity=0.988 Sum_probs=9.4
Q ss_pred cccCchHHHHHH
Q 042730 45 SYLKHPSFQNLL 56 (88)
Q Consensus 45 ~~L~hP~F~~LL 56 (88)
.|||||.|.-|-
T Consensus 5 ~YLNHPtFGlLy 16 (89)
T 2xko_C 5 NYLNHPTFGLLY 16 (89)
T ss_dssp CEEEETTTEEEE
T ss_pred ccccCCccchhh
Confidence 599999986554
No 14
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=40.44 E-value=11 Score=24.00 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=18.7
Q ss_pred cccCchHHHHHHhhhhhhcC
Q 042730 45 SYLKHPSFQNLLSQTEEEFG 64 (88)
Q Consensus 45 ~~L~hP~F~~LL~~aeeEfG 64 (88)
.||+.-.|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
No 15
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=40.27 E-value=9.1 Score=23.15 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.1
Q ss_pred ccccCchHHHHHHhhhhhhcC
Q 042730 44 ISYLKHPSFQNLLSQTEEEFG 64 (88)
Q Consensus 44 ~~~L~hP~F~~LL~~aeeEfG 64 (88)
-.||+.-.|++++.++.+||-
T Consensus 30 E~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 30 EIYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGGSCHHHHHHHTSSCHHHHT
T ss_pred HhhCCHHHHHHHHCcCHHHHH
Confidence 379999999999999999984
No 16
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=39.40 E-value=38 Score=20.95 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=36.5
Q ss_pred EEEEEcCCcceEEEEeccccC--chHHHHHHhhhhhhcCCccCCCceEee--CCHHHHHHHHhc
Q 042730 28 FVVYVGETTKKRFVLPISYLK--HPSFQNLLSQTEEEFGFDHPMGGLTIP--CSEEVFMDLISS 87 (88)
Q Consensus 28 ~~VyVG~e~~~RfvVp~~~L~--hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~F~~vl~~ 87 (88)
+.+.||+ ++|-+.-..|. .|.|++++... .. ..+.|| .+.+.|+.++..
T Consensus 36 v~l~v~~---~~~~~Hk~vLaa~S~~F~~~f~~~-------~~-~~i~l~~~~~~~~f~~ll~~ 88 (129)
T 3ga1_A 36 VSVVVKG---HAFKAHRAVLAASSSYFRDLFNNS-------RS-AVVELPAAVQPQSFQQILSF 88 (129)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHHHC-------CC-SEEECCTTCCHHHHHHHHHH
T ss_pred eEEEECC---EEEEehHHHHHHcCHHHHHHHcCC-------CC-CEEEECCCCCHHHHHHHHHH
Confidence 4666763 67777766664 68999998765 23 689997 889999998863
No 17
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=35.23 E-value=50 Score=19.44 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=36.2
Q ss_pred EEEEEcCC-cceEEEEecccc--CchHHHHHHhhhhhhcCCccCCCceEee-CCHHHHHHHHhc
Q 042730 28 FVVYVGET-TKKRFVLPISYL--KHPSFQNLLSQTEEEFGFDHPMGGLTIP-CSEEVFMDLISS 87 (88)
Q Consensus 28 ~~VyVG~e-~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~F~~vl~~ 87 (88)
+.+.||++ ..++|-++-..| ..|.|++++...-.|- . ..+.|| .+.+.|+.++..
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~----~-~~i~l~~~~~~~f~~~l~~ 69 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV----K-SEIHIPDVEPAAFLILLKY 69 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC----------C-CEEEETTSCHHHHHHHHHH
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC----C-CeEEeCCCCHHHHHHHHHH
Confidence 34566652 237888888887 5899999997543331 1 468887 688999988863
No 18
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=33.50 E-value=1.8 Score=32.18 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=19.0
Q ss_pred ccCCCceEEEEEcCCcceEEEEeccccCchHH
Q 042730 21 TIVPKGHFVVYVGETTKKRFVLPISYLKHPSF 52 (88)
Q Consensus 21 ~~vpkG~~~VyVG~e~~~RfvVp~~~L~hP~F 52 (88)
..+|+||+|..-.- +=..+-.++|+||.|
T Consensus 208 l~AP~GHLP~~~~l---rGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 208 LSAPRGHLPLTNQL---RGVQVLNALLNHPAW 236 (238)
T ss_dssp TTSCTTCCSCCCCT---TCSHHHHHHHTCGGG
T ss_pred CCCCCCCCCcCccc---ccHHHHHHHHcCccc
Confidence 35999999985421 112244578888876
No 19
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=33.12 E-value=2.3 Score=31.48 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=19.8
Q ss_pred ccCCCceEEEEEcCCcceEEEEeccccCchHHH
Q 042730 21 TIVPKGHFVVYVGETTKKRFVLPISYLKHPSFQ 53 (88)
Q Consensus 21 ~~vpkG~~~VyVG~e~~~RfvVp~~~L~hP~F~ 53 (88)
..+|+||+|..-.- +=..+=.+.|+||.|.
T Consensus 200 l~AP~GHLP~~~~l---rG~~l~~~ll~hpa~~ 229 (233)
T 1y6i_A 200 LSAPQGHLPLLNQL---RGVRVAESLYRHPVWS 229 (233)
T ss_dssp TTSCTTCCSCCCCT---TCTHHHHHHHTSTHHH
T ss_pred CCCCCCCCCCcccc---chHHHHHHHHCCcccc
Confidence 35999999986421 1112556788999884
No 20
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=31.82 E-value=63 Score=19.41 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=35.6
Q ss_pred EEEEEcCCcceEEEEecccc--CchHHHHHHhhhhhhcCCccCCCceEee-CCHHHHHHHHhc
Q 042730 28 FVVYVGETTKKRFVLPISYL--KHPSFQNLLSQTEEEFGFDHPMGGLTIP-CSEEVFMDLISS 87 (88)
Q Consensus 28 ~~VyVG~e~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~F~~vl~~ 87 (88)
+.+.||+ ++|-+.-..| ..|.|++++...-.| .. ...+.|+ .+.+.|+.++..
T Consensus 28 v~l~v~~---~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~-~~~i~l~~~~~~~f~~ll~~ 83 (120)
T 2if5_A 28 VVILVEG---REFPTHRSVLAACSQYFKKLFTSGAVV---DQ-QNVYEIDFVSAEALTALMDF 83 (120)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHC--------C-CSEEECCSSCHHHHHHHHHH
T ss_pred eEEEECC---EEEeHHHHHHHHhCHHHHHHhcCCccc---cC-CceEEeCCCCHHHHHHHHHH
Confidence 3456663 6788877777 479999999754333 22 2678888 588999988763
No 21
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=30.60 E-value=18 Score=24.82 Aligned_cols=27 Identities=41% Similarity=0.596 Sum_probs=23.7
Q ss_pred eEEEEeccccCch---HHHHHHhhhhhhcC
Q 042730 38 KRFVLPISYLKHP---SFQNLLSQTEEEFG 64 (88)
Q Consensus 38 ~RfvVp~~~L~hP---~F~~LL~~aeeEfG 64 (88)
+=|.||+.-|+|= .-++|+++|.|.|+
T Consensus 49 rGi~V~LrrLK~fDC~ek~~L~~rAre~Y~ 78 (134)
T 3pmi_A 49 KGFTVSLKSLKHFDCKEKQTLLNQAREDFN 78 (134)
T ss_dssp CCEEEEGGGCEETTSTTHHHHHHHHTTTCH
T ss_pred CceEeEcccCCCCChHhHHHHHHHHHHHhc
Confidence 6799999988874 48999999999997
No 22
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=30.59 E-value=19 Score=19.13 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=14.1
Q ss_pred cCchHHHHHHhhhhhhc
Q 042730 47 LKHPSFQNLLSQTEEEF 63 (88)
Q Consensus 47 L~hP~F~~LL~~aeeEf 63 (88)
|+.-.|++++.++.+||
T Consensus 1 Lsd~dF~~vFgmsr~eF 17 (35)
T 1wy3_A 1 LSDEDFKAVFGMTRSAF 17 (35)
T ss_dssp CCHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
Confidence 56678999999998887
No 23
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=29.15 E-value=70 Score=19.41 Aligned_cols=49 Identities=27% Similarity=0.272 Sum_probs=34.9
Q ss_pred EEEEEcCCcceEEEEecccc--CchHHHHHHhhhhhhcCCccCCCceEee-CCHHHHHHHHhc
Q 042730 28 FVVYVGETTKKRFVLPISYL--KHPSFQNLLSQTEEEFGFDHPMGGLTIP-CSEEVFMDLISS 87 (88)
Q Consensus 28 ~~VyVG~e~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~F~~vl~~ 87 (88)
+.+.||+ ++|-+.-..| ..|.|++++.... + +.+.|| .+.+.|+.++..
T Consensus 27 v~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~~~-------~-~~i~l~~~~~~~f~~ll~~ 78 (119)
T 3b84_A 27 ATLDVGG---LVFKAHWSVLACCSHFFQSLYGDGS-------G-GSVVLPAGFAEIFGLLLDF 78 (119)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTTTT-------C-CCEEECGGGHHHHHHHHHH
T ss_pred eEEEECC---EEEEeeHHHHhhcCHHHHHHHCCCC-------C-CeEEeCCCCHHHHHHHHHH
Confidence 3455664 6787777766 4799999987532 2 679998 567889988763
No 24
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=27.95 E-value=51 Score=20.08 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=36.2
Q ss_pred EEEEEcCCcceEEEEeccccC--chHHHHHHhhhhhhcCCccCCCceEee--CCHHHHHHHHhc
Q 042730 28 FVVYVGETTKKRFVLPISYLK--HPSFQNLLSQTEEEFGFDHPMGGLTIP--CSEEVFMDLISS 87 (88)
Q Consensus 28 ~~VyVG~e~~~RfvVp~~~L~--hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~F~~vl~~ 87 (88)
+.+.||+ ++|-+.-..|. .|.|++++.....| + ..+.+| .+...|+.++..
T Consensus 35 v~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~~~~e-----~-~~i~l~~~~~~~~f~~~l~~ 89 (125)
T 3ohu_A 35 VTLIVER---KEFRAHRAVLAACSEYFWQALVGQTKN-----D-LVVSLPEEVTARGFGPLLQF 89 (125)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHTTCCCS-----S-CEEECCTTCCHHHHHHHHHH
T ss_pred eEEEECC---EEEechHHHHHHcCHHHHHHhcCCCCC-----C-cEEEeCCCCCHHHHHHHHHh
Confidence 4566763 66777766664 68999999765333 2 568887 789999988863
No 25
>2lmc_A Bacterial RNA polymerase inhibitor; transferase, transcription; NMR {Enterobacteria phage T7} PDB: 2wnm_A
Probab=27.72 E-value=43 Score=21.19 Aligned_cols=14 Identities=14% Similarity=0.117 Sum_probs=9.8
Q ss_pred HHHHHhhhhhhcCC
Q 042730 52 FQNLLSQTEEEFGF 65 (88)
Q Consensus 52 F~~LL~~aeeEfG~ 65 (88)
+-+-|+.||+||+-
T Consensus 56 LdEAlE~AE~eYee 69 (84)
T 2lmc_A 56 LDEALELAEWQYVP 69 (84)
T ss_dssp HHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHhhh
Confidence 55667778878863
No 26
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=23.94 E-value=34 Score=21.65 Aligned_cols=9 Identities=33% Similarity=1.132 Sum_probs=8.1
Q ss_pred eEEEEEcCC
Q 042730 27 HFVVYVGET 35 (88)
Q Consensus 27 ~~~VyVG~e 35 (88)
|.+||||++
T Consensus 23 H~gIYvGdg 31 (125)
T 2lkt_A 23 HWALYIGDG 31 (125)
T ss_dssp EEEEEEETT
T ss_pred EEEEEeCCC
Confidence 899999985
No 27
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=23.49 E-value=89 Score=18.90 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=34.4
Q ss_pred EEEEEcCCcceEEEEecccc--CchHHHHHHhhhhhhcCCccCCCceEee-CCHHHHHHHHhc
Q 042730 28 FVVYVGETTKKRFVLPISYL--KHPSFQNLLSQTEEEFGFDHPMGGLTIP-CSEEVFMDLISS 87 (88)
Q Consensus 28 ~~VyVG~e~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~F~~vl~~ 87 (88)
+.+.||+ ++|-+.-..| ..|.|++++.. .+ ..+.|+ .+.+.|+.++..
T Consensus 31 v~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~--------~~-~~i~l~~~~~~~f~~ll~~ 81 (121)
T 1buo_A 31 VVIMVDS---QEFHAHRTVLACTSKMFEILFHR--------NS-QHYTLDFLSPKTFQQILEY 81 (121)
T ss_dssp EEEEESS---CEEEECHHHHHHHCHHHHHHTTS--------CC-SEEEECSSCHHHHHHHHHH
T ss_pred EEEEECC---EEEehhHHHHhhcCHHHHHHHcC--------CC-cEEEeCCCCHHHHHHHHHh
Confidence 3456663 6677777766 67999999864 12 578888 788999988763
No 28
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=23.32 E-value=42 Score=26.71 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=31.0
Q ss_pred cccCCCceEEEEEcC---------CcceEEEEeccccCchHHHHHHhhhhhhcCC
Q 042730 20 ATIVPKGHFVVYVGE---------TTKKRFVLPISYLKHPSFQNLLSQTEEEFGF 65 (88)
Q Consensus 20 ~~~vpkG~~~VyVG~---------e~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~ 65 (88)
+-..|++++-+-|-| .-++|-.-=++ ..||.||+.|.+++++.|+
T Consensus 401 ~vtt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 401 PVTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp SCSBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred CcccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 445688887777754 11244443345 8899999999988888764
No 29
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=22.57 E-value=98 Score=19.49 Aligned_cols=53 Identities=21% Similarity=0.382 Sum_probs=37.4
Q ss_pred EEEEEcCCcceEEEEecccc--CchHHHHHHhhhhhhcCCccCCCceEee-CCHHHHHHHHhc
Q 042730 28 FVVYVGETTKKRFVLPISYL--KHPSFQNLLSQTEEEFGFDHPMGGLTIP-CSEEVFMDLISS 87 (88)
Q Consensus 28 ~~VyVG~e~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~F~~vl~~ 87 (88)
+.+.||+ ++|-++-..| ..|.|++++...-.| ..+ ..+.|| .+.+.|+.++..
T Consensus 37 v~l~v~~---~~~~~Hk~iL~~~S~~F~~~f~~~~~e---~~~-~~i~l~~~~~~~f~~~l~~ 92 (172)
T 3htm_A 37 CCLCVAG---QEFQAHKAILAARSPVFSAMFEHEMEE---SKK-NRVEINDVEPEVFKEMMCF 92 (172)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHSCCCG---GGT-TEEEECSSCHHHHHHHHHH
T ss_pred eEEEECC---EEEEeeHHHHHHcCHHHHHHHccCccc---cCC-CeEEecCCCHHHHHHHHHH
Confidence 5666763 6788887777 479999999853222 122 678887 588999988763
No 30
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=21.51 E-value=1e+02 Score=18.71 Aligned_cols=48 Identities=19% Similarity=0.353 Sum_probs=33.5
Q ss_pred EEEEEcCCcceEEEEecccc--CchHHHHHHhhhhhhcCCccCCCceEee-CCHHHHHHHHhc
Q 042730 28 FVVYVGETTKKRFVLPISYL--KHPSFQNLLSQTEEEFGFDHPMGGLTIP-CSEEVFMDLISS 87 (88)
Q Consensus 28 ~~VyVG~e~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~F~~vl~~ 87 (88)
+.+.||+ ++|-+.-..| ..|.|++++... + ..+.++ .+.+.|+.++..
T Consensus 34 v~l~v~~---~~f~aHk~vLaa~S~~F~~~f~~~--------~-~~i~l~~~~~~~f~~~l~~ 84 (116)
T 3fkc_A 34 VTVIVED---RKFRAHKNILSASSTYFHQLFSVA--------G-QVVELSFIRAEIFAEILNY 84 (116)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHTTSC--------C-SEEEECSSCHHHHHHHHHH
T ss_pred EEEEECC---EEEehhHHHHHHcCHHHHHHHcCC--------C-CEEEeCCCCHHHHHHHHHh
Confidence 3556664 6677765555 458899888653 2 578887 788999988763
No 31
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=21.50 E-value=51 Score=24.02 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=28.0
Q ss_pred CCceEEEEEcCCcceEEEEeccccCchHHHHHHhhhhhhcCCc
Q 042730 24 PKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFD 66 (88)
Q Consensus 24 pkG~~~VyVG~e~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~ 66 (88)
+.-..-|+-|.+. ++.-.--+++++|.|++.++++.+.+|++
T Consensus 8 ~~~~~f~F~GQGs-Q~~gMg~~L~~~p~fr~~~~~~~~~lg~~ 49 (318)
T 3ezo_A 8 HMKFAFVFPGQGS-QSVGMLNAFADVAVVRETLDEASDALGQD 49 (318)
T ss_dssp -CCEEEEECCTTC-CCTTTTGGGTTCHHHHHHHHHHHHHHSSC
T ss_pred CCCeEEEECCcch-hhhhHHHHHhhCHHHHHHHHHHHHHhCCC
Confidence 3345667777643 22222234448999999999999999875
No 32
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=21.40 E-value=49 Score=16.87 Aligned_cols=13 Identities=31% Similarity=0.767 Sum_probs=10.3
Q ss_pred HHHHHhhhhhhcC
Q 042730 52 FQNLLSQTEEEFG 64 (88)
Q Consensus 52 F~~LL~~aeeEfG 64 (88)
..+|.+.-||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4677888889987
No 33
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=20.69 E-value=77 Score=19.22 Aligned_cols=48 Identities=10% Similarity=0.074 Sum_probs=34.1
Q ss_pred EEEEEcCCcceEEEEecccc--CchHHHHHHhhhhhhcCCccCCCceEeeC-CHHHHHHHHhc
Q 042730 28 FVVYVGETTKKRFVLPISYL--KHPSFQNLLSQTEEEFGFDHPMGGLTIPC-SEEVFMDLISS 87 (88)
Q Consensus 28 ~~VyVG~e~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IPC-~~~~F~~vl~~ 87 (88)
+.+.||+ ++|-+.-..| ..|.|++++.. ++ ..+.++- +.+.|+.++..
T Consensus 30 v~l~v~~---~~~~aHk~vLaa~S~yF~~~f~~--------~~-~~i~l~~~~~~~f~~ll~~ 80 (119)
T 2q81_A 30 CTFVVDG---VHFKAHKAVLAACSEYFKMLFVD--------QK-DVVHLDISNAAGLGQVLEF 80 (119)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHH--------CC-SGGGGGGCCHHHHHHHHHH
T ss_pred eEEEECC---EEEehhHHHHHHcCHHHHHHHcC--------CC-CEEEeCCCCHHHHHHHHHH
Confidence 3455664 6788887777 47999999974 12 5677774 77889888763
No 34
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=20.47 E-value=45 Score=24.94 Aligned_cols=51 Identities=16% Similarity=0.267 Sum_probs=36.1
Q ss_pred CCceEEEEEcCCcceEEEEeccccCchHHHHHHhhhhhhcCCccCCCceEee--CCHHHHHHHHhc
Q 042730 24 PKGHFVVYVGETTKKRFVLPISYLKHPSFQNLLSQTEEEFGFDHPMGGLTIP--CSEEVFMDLISS 87 (88)
Q Consensus 24 pkG~~~VyVG~e~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~F~~vl~~ 87 (88)
+.|...|.||++. ..-....--.++.++.|+... .+.+| ++.+++...+..
T Consensus 33 ~P~Lavilvg~dp-----------aS~~Yv~~k~k~~~~~Gi~~~--~~~lp~~~s~~ell~~I~~ 85 (285)
T 3p2o_A 33 ESCLAVILVGDNP-----------ASQTYVKSKAKACEECGIKSL--VYHLNENITQNELLALINT 85 (285)
T ss_dssp CCEEEEEEESCCH-----------HHHHHHHHHHHHHHHHTCEEE--EEEECTTCCHHHHHHHHHH
T ss_pred CCeEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCeEE--EEECCCCCCHHHHHHHHHH
Confidence 6789999999841 012345566778889999763 67788 777777776653
Done!