BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042731
(481 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 135/473 (28%), Positives = 209/473 (44%), Gaps = 43/473 (9%)
Query: 2 AQGHIIPFLALARRLEETNKYTITLVNTXXXXXXXXXXXXXXXXIHLLEIPFNSVEHDLP 61
GH+IP + A+RL + T+T V L +P + LP
Sbjct: 16 GMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTV------LDSLPSSISSVFLP 69
Query: 62 PCTENTDSIPYHLFPKFLQASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETA 121
P S + + P +K+ V + G+ P ++ D F + A
Sbjct: 70 PVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFV--EGGRLPTALVVDLFGTDAFDVA 127
Query: 122 QEYXXXXXXXXXXXXXXXXCLYSMLLNLPHRSTDSDEFLLPDFPEASTLHVTQISPYLRA 181
E+ + S L+LP DE + +F E + + +
Sbjct: 128 VEFHVPPYIFYPTTAN----VLSFFLHLPKL----DETVSCEFRELTEPLMLPGCVPVAG 179
Query: 182 TD----GSDSFSVFYKKLL---LLWKDADGILVNTVEELDKIGLMYFKRKF--GRPVWPI 232
D D YK LL +K+A+GILVNT EL+ + + PV+P+
Sbjct: 180 KDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPVYPV 239
Query: 233 GPVLLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIXXXXXXXXXXXXX 292
GP++ G ++ C KWLD +P SVLYVSFGS T+
Sbjct: 240 GPLV-----NIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLA 294
Query: 293 XXGKNFIWVVRPPIG------FDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEI 346
+ F+WV+R P G FD +S+ +LP GF ER K +G V+ WAPQ ++
Sbjct: 295 DSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTK--KRGFVIPFWAPQAQV 352
Query: 347 LSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSC 406
L+H S FL+HCGWNS LE++ G+P+I WPL AEQ N+ LL E++ + G
Sbjct: 353 LAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDG 412
Query: 407 EVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAM 459
V +E+++ ++ +M E E+G +RNK E+K ++++ G+S KA+
Sbjct: 413 LVRREEVARVVKGLM-EGEEGKGVRNKMKELKEAACRVLKDD----GTSTKAL 460
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 120/432 (27%), Positives = 204/432 (47%), Gaps = 54/432 (12%)
Query: 46 IHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQASASLEPHFKKLISELVNEQNGQKP 105
I L+++P VE PP E S +++ FL+ SL PH K I +++ K
Sbjct: 69 IQLIDLP--EVE---PPPQELLKSPEFYIL-TFLE---SLIPHVKATIKTILS----NKV 115
Query: 106 LCIITDTFLGWCKETAQEYXXXXXXXXXXXXXXXXCLYSMLLNLPHR-------STDSDE 158
+ ++ D F + E+ S++L+L +R +D D
Sbjct: 116 VGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVG----FLSLMLSLKNRQIEEVFDDSDRDH 171
Query: 159 FLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDK--I 216
LL + P S + + P A D + Y KL ++D GI+VNT +L++ I
Sbjct: 172 QLL-NIPGISNQVPSNVLP--DACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSI 228
Query: 217 GLMYFKRKFGRPVWPIGPVLLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQ 276
+Y + P++ +GP LL + + + + +L KWLD +P SV+++ FGS
Sbjct: 229 DALYDHDEKIPPIYAVGP-LLDLKGQPNPKLDQA-QHDLILKWLDEQPDKSVVFLCFGSM 286
Query: 277 N-TIXXXXXXXXXXXXXXXGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGL 335
+ G F+W S K P GF E ++ G+G+
Sbjct: 287 GVSFGPSQIREIALGLKHSGVRFLW-----------SNSAEKKVFPEGFLEWMELEGKGM 335
Query: 336 VVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMG 395
+ WAPQVE+L+H+++ F+SHCGWNS+LE++ GVPI+ WP+ AEQ N+ L +E G
Sbjct: 336 IC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWG 394
Query: 396 VCVEIA---RGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFK 452
V + + R S V E++ ++ +M +K + + K E+K + +NAV +
Sbjct: 395 VGLGLRVDYRKGSDVVAAEEIEKGLKDLM---DKDSIVHKKVQEMKEMSRNAVVD----G 447
Query: 453 GSSVKAMDQFLN 464
GSS+ ++ + ++
Sbjct: 448 GSSLISVGKLID 459
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 128 bits (321), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 120/432 (27%), Positives = 204/432 (47%), Gaps = 54/432 (12%)
Query: 46 IHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQASASLEPHFKKLISELVNEQNGQKP 105
I L+++P VE PP E S +++ FL+ SL PH K I +++ K
Sbjct: 69 IQLIDLP--EVE---PPPQELLKSPEFYIL-TFLE---SLIPHVKATIKTILS----NKV 115
Query: 106 LCIITDTFLGWCKETAQEYXXXXXXXXXXXXXXXXCLYSMLLNLPHR-------STDSDE 158
+ ++ D F + E+ S++L+L +R +D D
Sbjct: 116 VGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVG----FLSLMLSLKNRQIEEVFDDSDRDH 171
Query: 159 FLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDK--I 216
LL + P S + + P A D + Y KL ++D GI+VNT +L++ I
Sbjct: 172 QLL-NIPGISNQVPSNVLP--DACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSI 228
Query: 217 GLMYFKRKFGRPVWPIGPVLLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQ 276
+Y + P++ +GP LL + + + + +L KWLD +P SV+++ FGS
Sbjct: 229 DALYDHDEKIPPIYAVGP-LLDLKGQPNPKLDQA-QHDLILKWLDEQPDKSVVFLCFGSM 286
Query: 277 N-TIXXXXXXXXXXXXXXXGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGL 335
+ G F+W S K P GF E ++ G+G+
Sbjct: 287 GVSFGPSQIREIALGLKHSGVRFLW-----------SNSAEKKVFPEGFLEWMELEGKGM 335
Query: 336 VVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMG 395
+ WAPQVE+L+H+++ F+SHCGWNS+LE++ GVPI+ WP+ AEQ N+ L +E G
Sbjct: 336 IC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWG 394
Query: 396 VCVEIA---RGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFK 452
V + + R S V E++ ++ +M +K + + K E+K + +NAV +
Sbjct: 395 VGLGLRVDYRKGSDVVAAEEIEKGLKDLM---DKDSIVHKKVQEMKEMSRNAVVD----G 447
Query: 453 GSSVKAMDQFLN 464
GSS+ ++ + ++
Sbjct: 448 GSSLISVGKLID 459
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 114/372 (30%), Positives = 165/372 (44%), Gaps = 43/372 (11%)
Query: 76 PKFLQASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYXXXXXXXXXXX 135
P FL A ++ +FK +I E V E G+ C++TD F + + A+E
Sbjct: 91 PIFLFIKA-MQENFKHVIDEAVAE-TGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAG 148
Query: 136 XXXXXCLYSMLLNLPHRSTDSDEF-------LLPDFPE--ASTLHVTQISPYLRATDGSD 186
L + +L T S E +LP FPE AS L P D
Sbjct: 149 PHS--LLTHVYTDLIREKTGSKEVHDVKSIDVLPGFPELKASDL------PEGVIKDIDV 200
Query: 187 SFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRKFGRPVWPIGPVLLSTESRAGAR 246
F+ K+ L A+ + +N+ + + KF + + +GP L+T R
Sbjct: 201 PFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKF-KLLLNVGPFNLTTPQRK-VS 258
Query: 247 KEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIXXXXXXXXXXXXXXXGKNFIWVVRPPI 306
E+G C +WLD +SV+Y+SFGS T G FIW R
Sbjct: 259 DEHG-----CLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRG-- 311
Query: 307 GFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLE 366
+ LP+GF ER K G+ + WAPQVEIL H SV FL+H GWNSVLE
Sbjct: 312 --------DPKEKLPKGFLERTKTKGK---IVAWAPQVEILKHSSVGVFLTHSGWNSVLE 360
Query: 367 ALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNETEK 426
+ GVP+I P +Q N+ L E + + V + G+ + KE + +EL M+ +EK
Sbjct: 361 CIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGV---LTKESIKKALELTMS-SEK 416
Query: 427 GTDLRNKANEVK 438
G +R K ++K
Sbjct: 417 GGIMRQKIVKLK 428
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 111/466 (23%), Positives = 190/466 (40%), Gaps = 59/466 (12%)
Query: 2 AQGHIIPFLALARRLEETNKYTITLVNTXXXXXXXXXXXXXXXXIHLLEIPFNSVEHDLP 61
QGHI P LA+ L + IT VNT + F S+ L
Sbjct: 18 VQGHINPLFKLAKLLH-LRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIPDGLT 76
Query: 62 PCTENTDSIPYHLFPKFLQASAS--LEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKE 119
P + D P Q+ L+P + +L++ L + N C+++D + + +
Sbjct: 77 PMEGDGDV--SQDVPTLCQSVRKNFLKP-YCELLTRLNHSTNVPPVTCLVSDCCMSFTIQ 133
Query: 120 TAQEYXXXXXXXXXXXXXXXXCLYSMLLNLPHRSTDSDEFLLPD---------------- 163
A+E+ LLN+ H + + ++P
Sbjct: 134 AAEEFELPNVLYFSSSACS-------LLNVMHFRSFVERGIIPFKDESYLTNGCLETKVD 186
Query: 164 -FPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFK 222
P + I ++R T+ +D F+ ++ IL+NT EL+ +
Sbjct: 187 WIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALS 246
Query: 223 RKFGRPVWPIGPVLLSTESRAGARKEYGISTEL------CKKWLDTKPYTSVLYVSFGSQ 276
++PIGP+ + + + + L C WL++K SV+YV+FGS
Sbjct: 247 STIPS-IYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGST 305
Query: 277 NTIXXXXXXXXXXXXXXXGKNFIWVVRPP--IGFDI--NSEFKANKWLPRGFEERIKCSG 332
+ K+F+W++RP IG + +SEF N+ RG
Sbjct: 306 TVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEF-TNEIADRG--------- 355
Query: 333 QGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEE 392
++ W PQ ++L+H S+ FL+HCGWNS E++ GVP++ WP A+Q + + +
Sbjct: 356 ---LIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICN 412
Query: 393 EMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVK 438
E EI + V +E+L+ I V+ +KG ++ KA E+K
Sbjct: 413 EW----EIGMEIDTNVKREELAKLINEVI-AGDKGKKMKQKAMELK 453
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 127/270 (47%), Gaps = 28/270 (10%)
Query: 188 FSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRKFGRPVWPIGPVLLSTESRAGARK 247
FS ++ + A + +N+ EELD K K + IGP L T
Sbjct: 200 FSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKL-KTYLNIGPFNLITPPPVVP-- 256
Query: 248 EYGISTELCKKWLDTKPYTSVLYVSFGSQNTIXXXXXXXXXXXXXXXGKNFIWVVRPPIG 307
+T C +WL + TSV+Y+SFG+ T FIW +R
Sbjct: 257 ----NTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRD--- 309
Query: 308 FDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEA 367
KA LP GF E+ + G G+VV WAPQ E+L+H +V AF++HCGWNS+ E+
Sbjct: 310 -------KARVHLPEGFLEKTR--GYGMVV-PWAPQAEVLAHEAVGAFVTHCGWNSLWES 359
Query: 368 LSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKG 427
++ GVP+I P +Q N +++E+ + + V I G+ K L + + ++++ EKG
Sbjct: 360 VAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGV---FTKSGLMSCFDQILSQ-EKG 415
Query: 428 TDLRNKANEVKVIIKNAVRNETNFKGSSVK 457
LR ++ AV KGSS +
Sbjct: 416 KKLRENLRALRETADRAV----GPKGSSTE 441
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 337 VHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGV 396
VH+W PQ++IL+ SAF++H G S +EALS+ VP++ P AEQ N++ + E+G+
Sbjct: 309 VHQWVPQLDILT--KASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERI-VELGL 365
Query: 397 CVEIARG-MSCEVLKE 411
I R ++ E L+E
Sbjct: 366 GRHIPRDQVTAEKLRE 381
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 337 VHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQ 383
++KW PQ ++L H AF++H G N + EA+ HG+P +G PL A+Q
Sbjct: 72 LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 337 VHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGV 396
VH W PQ+ IL R F++H G E L+ P+I P A +QF N+ +L+
Sbjct: 287 VHDWVPQLAIL--RQADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQ----- 339
Query: 397 CVEIARGMSCEVLKEDLSAKIELVM-NETEKGTDLRNKANEV 437
+ +AR ++ E DL + L + ++ E LR E+
Sbjct: 340 GLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEM 381
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 328 IKCSGQGLV-----VHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAE 382
+ SG G V + W PQ +L H V + H G + L AL GVP + +P A +
Sbjct: 282 LDVSGLGEVPANVRLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGD 339
Query: 383 QF 384
F
Sbjct: 340 SF 341
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 338 HKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGV 396
H+W P +L+H A L+H +VLEA + GVP++ P A + S E+G+
Sbjct: 286 HQWIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGL 342
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 926
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 379 LAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSA-KIELVMNETEKGTDLRNKAN 435
LA FYNSK +E+ + ++ AR + + +++ L+ K E+V++ T G LR AN
Sbjct: 649 LAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLRLCAN 706
>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Bet1
pdb|1PD0|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Sed5
(Yeast Syntaxin-5)
pdb|1PD1|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide Containing The Dxe Cargo
Sorting Signal Of Yeast Sys1 Protein
Length = 810
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 379 LAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSA-KIELVMNETEKGTDLRNKAN 435
LA FYNSK +E+ + ++ AR + + +++ L+ K E+V++ T G LR AN
Sbjct: 533 LAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLRLCAN 590
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 338 HKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWP 378
H+W P V++L +V ++H G ++ EAL G P++ P
Sbjct: 302 HRWVPHVKVLEQATVC--VTHGGXGTLXEALYWGRPLVVVP 340
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 338 HKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWP 378
H+W P V++L +V ++H G ++ EAL G P++ P
Sbjct: 302 HRWVPHVKVLEQATVC--VTHGGXGTLXEALYWGRPLVVVP 340
>pdb|1RYP|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|G Chain G, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|U Chain U, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|G Chain G, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|G Chain G, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|U Chain U, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|G Chain G, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|U Chain U, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|G Chain G, Proteasome Inhibition By Fellutamide B
pdb|3D29|U Chain U, Proteasome Inhibition By Fellutamide B
pdb|3E47|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|G Chain G, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|U Chain U, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|A Chain A, Proteasome Activator Complex
pdb|1VSY|O Chain O, Proteasome Activator Complex
pdb|3L5Q|A Chain A, Proteasome Activator Complex
pdb|3L5Q|C Chain C, Proteasome Activator Complex
pdb|3MG4|G Chain G, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|U Chain U, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|G Chain G, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|U Chain U, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|G Chain G, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|U Chain U, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|G Chain G, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|U Chain U, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|G Chain G, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|U Chain U, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|G Chain G, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|U Chain U, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|G Chain G, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|U Chain U, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|G Chain G, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|U Chain U, 20s Yeast Proteasome In Complex With Glidobactin
Length = 243
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 51 IPFNSVEHDLPPCTENTDSIPYHLF-------PKFLQASASLEPHFKKLISELVNEQNGQ 103
+ F SV+ +L P TD Y++ PK + + +LE HFKK + +NE++ +
Sbjct: 132 LTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWE 191
Query: 104 K 104
K
Sbjct: 192 K 192
>pdb|1G0U|G Chain G, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|U Chain U, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|G Chain G, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|U Chain U, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|G Chain G, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|U Chain U, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3UN4|G Chain G, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|U Chain U, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|G Chain G, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|U Chain U, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|A Chain A, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|A Chain A, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 252
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 51 IPFNSVEHDLPPCTENTDSIPYHLF-------PKFLQASASLEPHFKKLISELVNEQNGQ 103
+ F SV+ +L P TD Y++ PK + + +LE HFKK + +NE++ +
Sbjct: 141 LTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWE 200
Query: 104 K 104
K
Sbjct: 201 K 201
>pdb|3CXE|A Chain A, Structure Of The Gm-Csf Receptor Complex
Length = 414
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 153 STDSDEFLLPDFPEASTLHVTQISPYLR-ATDGSDSFSVFYKKLLLLWKDADGILVNTVE 211
STD D FLL T V SP + G F V YK+L W+DA +L NT +
Sbjct: 118 STDQDHFLL-------TWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQ 170
>pdb|1GH7|A Chain A, Crystal Structure Of The Complete Extracellular Domain Of
The Beta- Common Receptor Of Il-3, Il-5, And Gm-Csf
pdb|1GH7|B Chain B, Crystal Structure Of The Complete Extracellular Domain Of
The Beta- Common Receptor Of Il-3, Il-5, And Gm-Csf
pdb|2GYS|A Chain A, 2.7 A Structure Of The Extracellular Domains Of The Human
Beta Common Receptor Involved In Il-3, Il-5, And Gm-Csf
Signalling
pdb|2GYS|B Chain B, 2.7 A Structure Of The Extracellular Domains Of The Human
Beta Common Receptor Involved In Il-3, Il-5, And Gm-Csf
Signalling
Length = 419
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 153 STDSDEFLLPDFPEASTLHVTQISPYLR-ATDGSDSFSVFYKKLLLLWKDADGILVNTVE 211
STD D FLL T V SP + G F V YK+L W+DA +L NT +
Sbjct: 118 STDQDHFLL-------TWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQ 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,603,444
Number of Sequences: 62578
Number of extensions: 468788
Number of successful extensions: 980
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 953
Number of HSP's gapped (non-prelim): 22
length of query: 481
length of database: 14,973,337
effective HSP length: 103
effective length of query: 378
effective length of database: 8,527,803
effective search space: 3223509534
effective search space used: 3223509534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)