Query 042731
Match_columns 481
No_of_seqs 123 out of 1426
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 08:52:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.1E-63 2.4E-68 503.0 47.1 447 1-471 18-474 (477)
2 PLN02534 UDP-glycosyltransfera 100.0 1.6E-62 3.6E-67 493.3 45.9 452 1-471 17-489 (491)
3 PLN02670 transferase, transfer 100.0 1.1E-61 2.3E-66 485.2 45.5 445 1-470 15-467 (472)
4 PLN02764 glycosyltransferase f 100.0 1.1E-61 2.4E-66 481.2 44.3 430 1-470 14-447 (453)
5 PLN02992 coniferyl-alcohol glu 100.0 1.6E-61 3.4E-66 484.3 45.6 434 1-469 14-470 (481)
6 PLN02208 glycosyltransferase f 100.0 1.2E-61 2.7E-66 483.6 43.4 424 1-468 13-439 (442)
7 PLN03007 UDP-glucosyltransfera 100.0 2E-61 4.3E-66 490.9 45.5 445 1-469 14-481 (482)
8 PLN00414 glycosyltransferase f 100.0 5.1E-61 1.1E-65 479.7 44.4 426 1-470 13-442 (446)
9 PLN02173 UDP-glucosyl transfer 100.0 6.8E-61 1.5E-65 477.2 44.7 423 1-468 14-448 (449)
10 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.4E-60 3E-65 477.2 45.3 427 1-468 16-450 (451)
11 PLN02555 limonoid glucosyltran 100.0 1.5E-60 3.2E-65 478.6 44.7 440 1-471 16-472 (480)
12 PLN02210 UDP-glucosyl transfer 100.0 9.6E-60 2.1E-64 473.0 45.4 425 1-468 17-455 (456)
13 PLN03015 UDP-glucosyl transfer 100.0 8.9E-60 1.9E-64 468.9 44.3 432 1-466 12-466 (470)
14 PLN00164 glucosyltransferase; 100.0 3.1E-59 6.8E-64 472.3 43.9 436 1-470 12-475 (480)
15 PLN02562 UDP-glycosyltransfera 100.0 5.7E-59 1.2E-63 467.0 45.0 419 1-466 15-447 (448)
16 PLN02448 UDP-glycosyltransfera 100.0 6E-59 1.3E-63 470.4 44.4 426 1-470 19-459 (459)
17 PLN02152 indole-3-acetate beta 100.0 1.4E-58 3.1E-63 461.3 44.0 435 1-466 12-454 (455)
18 PLN03004 UDP-glycosyltransfera 100.0 6.2E-59 1.3E-63 463.4 40.9 425 1-457 12-450 (451)
19 PLN02207 UDP-glycosyltransfera 100.0 5.7E-58 1.2E-62 457.9 44.5 434 1-469 12-466 (468)
20 PLN02554 UDP-glycosyltransfera 100.0 4.5E-57 9.7E-62 458.4 43.8 433 1-469 11-479 (481)
21 PLN02167 UDP-glycosyltransfera 100.0 7.3E-56 1.6E-60 448.8 43.9 439 1-469 12-473 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.2E-44 2.7E-49 368.5 28.0 402 1-470 30-468 (507)
23 TIGR01426 MGT glycosyltransfer 100.0 1.2E-42 2.6E-47 348.6 30.6 374 1-465 4-389 (392)
24 PF00201 UDPGT: UDP-glucoronos 100.0 1.7E-44 3.7E-49 373.5 7.0 380 2-444 9-426 (500)
25 cd03784 GT1_Gtf_like This fami 100.0 1.5E-40 3.3E-45 334.8 21.4 360 1-442 9-386 (401)
26 COG1819 Glycosyl transferases, 100.0 1.2E-38 2.6E-43 316.1 21.7 383 1-468 10-400 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 4.9E-38 1.1E-42 325.3 18.0 422 1-468 14-455 (496)
28 PRK12446 undecaprenyldiphospho 99.9 1.7E-24 3.7E-29 212.3 25.6 302 3-424 12-326 (352)
29 COG0707 MurG UDP-N-acetylgluco 99.9 1.5E-22 3.4E-27 196.1 25.8 316 3-437 11-338 (357)
30 PF13528 Glyco_trans_1_3: Glyc 99.9 1.7E-22 3.7E-27 197.0 24.7 297 2-420 11-317 (318)
31 TIGR00661 MJ1255 conserved hyp 99.9 5.5E-21 1.2E-25 186.2 23.8 124 266-424 188-315 (321)
32 PRK00726 murG undecaprenyldiph 99.8 4.8E-17 1E-21 161.3 30.6 332 3-467 12-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 4.1E-16 8.8E-21 154.2 29.5 314 3-434 10-335 (350)
34 TIGR00215 lpxB lipid-A-disacch 99.7 8.3E-16 1.8E-20 153.1 21.8 342 3-464 16-384 (385)
35 TIGR03590 PseG pseudaminic aci 99.7 2.4E-15 5.2E-20 142.9 22.2 254 2-389 13-278 (279)
36 TIGR01133 murG undecaprenyldip 99.7 6.1E-14 1.3E-18 138.5 27.9 87 342-434 243-332 (348)
37 COG4671 Predicted glycosyl tra 99.6 1.3E-13 2.7E-18 127.8 23.3 329 2-424 21-366 (400)
38 PRK13609 diacylglycerol glucos 99.6 1.1E-12 2.5E-17 131.1 27.5 146 265-434 201-349 (380)
39 PRK00025 lpxB lipid-A-disaccha 99.6 7.5E-13 1.6E-17 132.4 23.2 91 344-441 256-359 (380)
40 PF04101 Glyco_tran_28_C: Glyc 99.5 4.8E-16 1E-20 136.6 -1.6 137 268-424 1-145 (167)
41 TIGR03492 conserved hypothetic 99.4 1.2E-10 2.5E-15 116.3 28.1 137 266-424 205-365 (396)
42 PRK13608 diacylglycerol glucos 99.4 2.7E-11 5.8E-16 121.4 22.2 167 265-468 201-371 (391)
43 PLN02605 monogalactosyldiacylg 99.4 1.3E-10 2.8E-15 116.2 24.7 147 254-424 194-349 (382)
44 cd03814 GT1_like_2 This family 99.3 9.8E-09 2.1E-13 101.3 30.6 142 267-438 197-347 (364)
45 COG3980 spsG Spore coat polysa 99.2 1.5E-09 3.3E-14 98.1 18.4 146 268-440 160-306 (318)
46 PLN02871 UDP-sulfoquinovose:DA 99.2 4.2E-08 9.1E-13 100.8 30.5 142 268-439 264-416 (465)
47 PF03033 Glyco_transf_28: Glyc 99.1 8.6E-11 1.9E-15 99.7 6.3 119 1-136 7-132 (139)
48 PRK05749 3-deoxy-D-manno-octul 99.1 2.2E-07 4.8E-12 94.4 30.0 97 335-440 304-405 (425)
49 cd03800 GT1_Sucrose_synthase T 99.1 5E-07 1.1E-11 90.7 31.9 95 332-438 282-383 (398)
50 cd03817 GT1_UGDG_like This fam 99.1 2.3E-07 4.9E-12 91.6 28.6 149 266-441 201-361 (374)
51 cd03823 GT1_ExpE7_like This fa 99.0 6.1E-07 1.3E-11 88.2 30.9 142 266-434 190-340 (359)
52 cd03794 GT1_wbuB_like This fam 99.0 3.7E-07 7.9E-12 90.6 28.8 148 266-439 219-381 (394)
53 cd03816 GT1_ALG1_like This fam 99.0 1.1E-06 2.4E-11 88.9 31.0 92 333-438 294-399 (415)
54 cd03801 GT1_YqgM_like This fam 99.0 1.7E-06 3.8E-11 84.7 30.3 323 3-435 14-353 (374)
55 COG1519 KdtA 3-deoxy-D-manno-o 98.9 3.3E-06 7.2E-11 81.7 29.8 320 2-442 58-405 (419)
56 cd03818 GT1_ExpC_like This fam 98.9 2.4E-06 5.2E-11 86.0 30.7 96 332-439 280-382 (396)
57 cd03820 GT1_amsD_like This fam 98.9 2.6E-06 5.5E-11 83.0 29.0 96 333-440 235-336 (348)
58 cd03808 GT1_cap1E_like This fa 98.9 2.8E-06 6.1E-11 83.1 28.9 148 266-437 187-343 (359)
59 cd03819 GT1_WavL_like This fam 98.9 6E-06 1.3E-10 81.4 30.4 153 266-440 184-348 (355)
60 PRK10307 putative glycosyl tra 98.9 1.4E-05 3E-10 80.9 33.3 97 333-439 284-389 (412)
61 cd04962 GT1_like_5 This family 98.9 1.1E-05 2.5E-10 80.1 32.1 93 333-437 253-350 (371)
62 cd03798 GT1_wlbH_like This fam 98.8 2.7E-05 5.9E-10 76.5 33.5 135 266-424 201-345 (377)
63 cd03795 GT1_like_4 This family 98.8 4E-06 8.6E-11 82.7 26.8 148 267-440 191-349 (357)
64 PF04007 DUF354: Protein of un 98.8 5.3E-06 1.1E-10 80.1 25.9 290 4-421 11-308 (335)
65 TIGR02472 sucr_P_syn_N sucrose 98.8 1.8E-05 4E-10 80.7 31.5 94 333-436 317-419 (439)
66 cd03786 GT1_UDP-GlcNAc_2-Epime 98.8 2.3E-07 5E-12 92.1 16.9 134 265-424 197-338 (363)
67 TIGR03449 mycothiol_MshA UDP-N 98.8 3.4E-05 7.4E-10 77.8 31.8 94 333-438 283-383 (405)
68 TIGR00236 wecB UDP-N-acetylglu 98.7 3E-06 6.6E-11 84.3 22.8 79 332-424 254-335 (365)
69 cd03796 GT1_PIG-A_like This fa 98.7 1.9E-05 4.2E-10 79.4 28.7 78 333-424 250-334 (398)
70 TIGR02468 sucrsPsyn_pln sucros 98.7 6.8E-05 1.5E-09 81.7 33.6 97 333-439 548-653 (1050)
71 cd03805 GT1_ALG2_like This fam 98.7 2.3E-05 5.1E-10 78.5 28.8 94 332-438 279-379 (392)
72 cd03821 GT1_Bme6_like This fam 98.7 3.3E-05 7.2E-10 76.0 29.3 92 332-437 261-359 (375)
73 cd05844 GT1_like_7 Glycosyltra 98.7 7.5E-06 1.6E-10 81.2 24.2 94 332-437 244-350 (367)
74 cd03825 GT1_wcfI_like This fam 98.7 2.2E-05 4.9E-10 77.5 26.9 95 332-438 243-345 (365)
75 PRK14089 ipid-A-disaccharide s 98.7 1E-06 2.3E-11 85.6 16.4 149 267-441 168-332 (347)
76 cd03822 GT1_ecORF704_like This 98.6 0.00015 3.3E-09 71.4 31.9 96 332-440 246-351 (366)
77 cd03807 GT1_WbnK_like This fam 98.6 0.00014 3E-09 71.3 30.5 89 333-435 251-344 (365)
78 cd03799 GT1_amsK_like This is 98.6 7.4E-05 1.6E-09 73.5 28.0 95 332-438 235-342 (355)
79 cd03811 GT1_WabH_like This fam 98.6 3.9E-05 8.4E-10 74.7 25.8 81 332-424 245-333 (353)
80 PRK15179 Vi polysaccharide bio 98.6 0.00044 9.6E-09 73.6 34.1 97 332-438 573-674 (694)
81 PRK09922 UDP-D-galactose:(gluc 98.5 4.8E-05 1E-09 75.5 24.4 147 268-439 181-342 (359)
82 cd04955 GT1_like_6 This family 98.5 0.00024 5.1E-09 70.2 29.2 89 332-436 247-343 (363)
83 PRK01021 lpxB lipid-A-disaccha 98.5 4.4E-05 9.6E-10 78.2 23.7 200 211-441 369-589 (608)
84 TIGR03087 stp1 sugar transfera 98.5 5.1E-05 1.1E-09 76.4 23.6 93 332-438 279-377 (397)
85 PF02684 LpxB: Lipid-A-disacch 98.5 3E-05 6.5E-10 76.0 20.9 200 211-441 141-358 (373)
86 cd04951 GT1_WbdM_like This fam 98.5 9.7E-05 2.1E-09 72.8 25.1 78 333-424 245-327 (360)
87 TIGR03088 stp2 sugar transfera 98.4 0.00079 1.7E-08 67.1 29.5 92 334-437 256-352 (374)
88 KOG3349 Predicted glycosyltran 98.4 2.9E-06 6.3E-11 69.5 9.4 122 267-402 4-134 (170)
89 PF02350 Epimerase_2: UDP-N-ac 98.4 8.4E-06 1.8E-10 79.9 14.4 134 264-424 178-319 (346)
90 cd03804 GT1_wbaZ_like This fam 98.4 2.7E-05 5.9E-10 76.9 18.2 127 269-424 197-327 (351)
91 cd03812 GT1_CapH_like This fam 98.3 0.00047 1E-08 67.9 26.6 133 266-424 191-332 (358)
92 cd03809 GT1_mtfB_like This fam 98.3 0.00015 3.3E-09 71.3 22.3 91 332-436 252-349 (365)
93 cd03802 GT1_AviGT4_like This f 98.3 0.00034 7.4E-09 68.2 24.4 127 269-424 173-309 (335)
94 PLN00142 sucrose synthase 98.3 0.001 2.3E-08 71.1 28.7 73 354-436 669-749 (815)
95 PLN02275 transferase, transfer 98.3 0.0014 3.1E-08 65.3 28.1 75 333-421 286-371 (371)
96 TIGR03568 NeuC_NnaA UDP-N-acet 98.3 0.0012 2.6E-08 65.5 27.1 131 266-422 201-338 (365)
97 cd03791 GT1_Glycogen_synthase_ 98.2 0.002 4.4E-08 66.5 27.6 136 268-423 297-442 (476)
98 TIGR02149 glgA_Coryne glycogen 98.1 0.0053 1.1E-07 61.4 29.2 93 335-437 262-366 (388)
99 PLN02846 digalactosyldiacylgly 98.0 0.0096 2.1E-07 60.4 28.5 74 336-424 287-364 (462)
100 PLN02949 transferase, transfer 98.0 0.026 5.6E-07 57.8 32.1 97 332-440 334-440 (463)
101 PRK00654 glgA glycogen synthas 98.0 0.0068 1.5E-07 62.4 26.5 136 267-422 282-427 (466)
102 COG0763 LpxB Lipid A disacchar 97.9 0.0032 6.9E-08 60.8 21.3 214 212-466 145-379 (381)
103 cd03806 GT1_ALG11_like This fa 97.9 0.036 7.7E-07 56.2 30.4 80 332-424 304-393 (419)
104 cd03792 GT1_Trehalose_phosphor 97.9 0.012 2.7E-07 58.5 26.2 92 332-437 251-351 (372)
105 TIGR02095 glgA glycogen/starch 97.8 0.039 8.4E-07 56.9 30.0 135 268-422 292-436 (473)
106 TIGR02470 sucr_synth sucrose s 97.8 0.078 1.7E-06 57.1 33.0 93 333-435 619-725 (784)
107 PF13844 Glyco_transf_41: Glyc 97.8 0.00084 1.8E-08 67.4 15.3 140 265-424 283-431 (468)
108 TIGR02918 accessory Sec system 97.7 0.013 2.8E-07 60.6 24.3 102 332-441 375-484 (500)
109 cd04946 GT1_AmsK_like This fam 97.7 0.0017 3.6E-08 65.6 16.2 153 266-439 229-393 (407)
110 PRK15427 colanic acid biosynth 97.7 0.0021 4.5E-08 64.9 16.8 95 332-438 278-386 (406)
111 PF00534 Glycos_transf_1: Glyc 97.7 0.0013 2.7E-08 57.6 13.4 149 265-436 13-171 (172)
112 PRK15484 lipopolysaccharide 1, 97.6 0.0035 7.5E-08 62.7 17.8 82 332-424 256-345 (380)
113 COG0381 WecB UDP-N-acetylgluco 97.6 0.025 5.5E-07 54.9 22.5 77 334-424 263-342 (383)
114 cd04949 GT1_gtfA_like This fam 97.6 0.014 3E-07 58.0 21.1 101 332-441 260-363 (372)
115 COG5017 Uncharacterized conser 97.6 0.001 2.2E-08 53.8 10.0 111 269-402 2-123 (161)
116 cd04950 GT1_like_1 Glycosyltra 97.5 0.12 2.6E-06 51.5 29.2 79 332-424 253-341 (373)
117 cd03813 GT1_like_3 This family 97.5 0.055 1.2E-06 55.8 25.0 94 332-436 353-455 (475)
118 PLN02316 synthase/transferase 97.4 0.17 3.6E-06 56.2 28.5 119 333-468 900-1033(1036)
119 PF13692 Glyco_trans_1_4: Glyc 97.1 0.0022 4.8E-08 53.5 7.5 127 268-423 3-135 (135)
120 PLN02501 digalactosyldiacylgly 97.0 0.15 3.3E-06 53.7 21.7 76 334-424 602-682 (794)
121 cd01635 Glycosyltransferase_GT 96.9 0.11 2.5E-06 46.8 18.1 50 332-383 160-217 (229)
122 COG1817 Uncharacterized protei 96.8 0.45 9.8E-06 44.8 21.1 101 4-135 11-114 (346)
123 PRK15490 Vi polysaccharide bio 96.7 0.96 2.1E-05 46.9 30.9 73 333-417 455-532 (578)
124 PF06258 Mito_fiss_Elm1: Mitoc 96.5 0.8 1.7E-05 44.2 21.4 40 341-381 220-259 (311)
125 PRK10125 putative glycosyl tra 96.5 1.1 2.4E-05 45.1 23.0 71 334-417 287-365 (405)
126 KOG4626 O-linked N-acetylgluco 96.3 0.063 1.4E-06 54.7 12.3 128 265-402 757-889 (966)
127 PRK09814 beta-1,6-galactofuran 96.1 0.033 7.2E-07 54.6 9.8 95 332-442 206-317 (333)
128 PRK10017 colanic acid biosynth 96.1 1.9 4.1E-05 43.7 24.4 167 257-442 225-408 (426)
129 PRK14098 glycogen synthase; Pr 96.0 0.23 4.9E-06 51.4 15.5 133 268-422 308-450 (489)
130 COG3914 Spy Predicted O-linked 95.9 0.2 4.3E-06 51.0 13.9 138 264-417 427-572 (620)
131 PF13579 Glyco_trans_4_4: Glyc 95.8 0.01 2.2E-07 50.5 4.2 95 8-133 6-104 (160)
132 PF13477 Glyco_trans_4_2: Glyc 95.5 0.15 3.2E-06 42.6 9.9 90 9-133 13-107 (139)
133 TIGR02193 heptsyl_trn_I lipopo 95.3 0.86 1.9E-05 44.2 16.1 134 266-421 179-319 (319)
134 PF13524 Glyco_trans_1_2: Glyc 95.2 0.2 4.3E-06 38.6 8.9 67 358-436 9-75 (92)
135 PHA01633 putative glycosyl tra 94.5 2 4.4E-05 41.8 15.9 101 332-441 200-324 (335)
136 TIGR02201 heptsyl_trn_III lipo 94.5 5.2 0.00011 39.2 19.5 98 2-130 9-108 (344)
137 PF06722 DUF1205: Protein of u 93.8 0.074 1.6E-06 41.4 3.5 54 252-305 26-84 (97)
138 PF13439 Glyco_transf_4: Glyco 93.2 0.32 6.9E-06 41.9 7.2 96 7-136 16-112 (177)
139 cd03788 GT1_TPS Trehalose-6-Ph 92.8 13 0.00028 38.2 21.0 73 337-424 345-428 (460)
140 PHA01630 putative group 1 glyc 92.1 5.5 0.00012 38.9 14.7 77 339-424 196-295 (331)
141 PF12000 Glyco_trans_4_3: Gkyc 92.0 2.1 4.6E-05 37.2 10.2 30 104-133 66-96 (171)
142 PRK14099 glycogen synthase; Pr 91.1 6.9 0.00015 40.5 14.9 112 336-469 354-479 (485)
143 TIGR02919 accessory Sec system 89.3 9.8 0.00021 38.7 13.8 80 333-424 328-412 (438)
144 PLN02939 transferase, transfer 89.3 13 0.00029 41.2 15.5 83 333-422 837-930 (977)
145 PF04413 Glycos_transf_N: 3-De 88.6 1.6 3.4E-05 38.7 6.8 93 2-133 30-126 (186)
146 TIGR02400 trehalose_OtsA alpha 87.2 38 0.00082 34.7 25.8 104 338-467 341-455 (456)
147 cd03789 GT1_LPS_heptosyltransf 87.0 27 0.00059 32.9 18.4 37 2-38 9-46 (279)
148 COG3660 Predicted nucleoside-d 87.0 26 0.00056 32.6 14.3 78 287-377 189-271 (329)
149 COG4370 Uncharacterized protei 86.1 4.8 0.0001 37.9 8.5 83 339-435 301-387 (412)
150 PRK12342 hypothetical protein; 85.3 7.9 0.00017 36.1 9.7 41 86-133 98-144 (254)
151 PRK02797 4-alpha-L-fucosyltran 84.2 29 0.00063 33.2 12.9 80 334-421 207-292 (322)
152 PRK10422 lipopolysaccharide co 84.2 45 0.00097 32.8 20.4 99 266-377 183-287 (352)
153 PF01975 SurE: Survival protei 83.7 0.86 1.9E-05 40.7 2.6 28 8-36 15-42 (196)
154 PRK14501 putative bifunctional 83.3 76 0.0016 34.8 19.8 114 336-471 345-465 (726)
155 PF08660 Alg14: Oligosaccharid 82.7 18 0.00039 31.5 10.4 30 104-133 92-129 (170)
156 PRK03359 putative electron tra 82.5 12 0.00025 35.0 9.6 42 85-133 100-147 (256)
157 COG0496 SurE Predicted acid ph 81.8 6.4 0.00014 36.3 7.5 27 8-36 15-41 (252)
158 TIGR00715 precor6x_red precorr 80.2 14 0.00029 34.6 9.3 81 9-132 12-99 (256)
159 PF07429 Glyco_transf_56: 4-al 79.0 58 0.0013 31.7 13.0 82 333-422 245-332 (360)
160 TIGR03713 acc_sec_asp1 accesso 78.2 3.6 7.8E-05 42.8 5.3 92 333-441 409-506 (519)
161 cd01424 MGS_CPS_II Methylglyox 78.1 14 0.00031 29.2 7.8 82 6-130 12-100 (110)
162 PLN03063 alpha,alpha-trehalose 76.9 17 0.00037 40.1 10.3 105 340-470 363-479 (797)
163 cd03793 GT1_Glycogen_synthase_ 76.5 22 0.00048 37.2 10.2 77 343-424 468-553 (590)
164 TIGR02398 gluc_glyc_Psyn gluco 75.9 70 0.0015 33.0 13.7 112 335-471 364-485 (487)
165 TIGR02195 heptsyl_trn_II lipop 75.2 83 0.0018 30.5 19.5 96 265-377 173-276 (334)
166 PRK06718 precorrin-2 dehydroge 75.1 62 0.0013 29.0 12.8 145 266-444 11-165 (202)
167 smart00851 MGS MGS-like domain 74.7 13 0.00028 28.3 6.3 79 9-129 2-89 (90)
168 PF01012 ETF: Electron transfe 74.3 18 0.0004 31.0 8.0 94 8-133 19-122 (164)
169 PF10093 DUF2331: Uncharacteri 73.7 98 0.0021 30.6 17.5 44 334-380 245-291 (374)
170 PF00731 AIRC: AIR carboxylase 73.1 57 0.0012 27.7 11.5 140 268-444 2-149 (150)
171 PRK10916 ADP-heptose:LPS hepto 71.3 1.1E+02 0.0023 30.0 19.9 96 2-130 10-106 (348)
172 PF02142 MGS: MGS-like domain 70.0 4.6 0.0001 31.2 2.9 84 9-129 2-94 (95)
173 PF06925 MGDG_synth: Monogalac 69.8 12 0.00026 32.3 5.8 44 83-133 75-124 (169)
174 PF06506 PrpR_N: Propionate ca 69.8 9.5 0.00021 33.4 5.1 71 348-423 31-124 (176)
175 PRK02155 ppnK NAD(+)/NADH kina 69.3 32 0.00068 32.9 8.9 53 352-424 64-120 (291)
176 PRK08057 cobalt-precorrin-6x r 68.4 35 0.00075 31.7 8.7 39 87-132 55-99 (248)
177 cd07039 TPP_PYR_POX Pyrimidine 67.3 81 0.0018 27.1 10.6 28 352-379 64-97 (164)
178 cd00532 MGS-like MGS-like doma 66.9 27 0.00058 27.9 6.8 82 7-130 12-104 (112)
179 COG2086 FixA Electron transfer 66.7 47 0.001 31.0 9.2 42 85-133 99-146 (260)
180 PF09314 DUF1972: Domain of un 66.4 87 0.0019 27.6 10.4 40 11-54 25-64 (185)
181 cd03466 Nitrogenase_NifN_2 Nit 64.6 57 0.0012 33.1 10.3 36 87-132 362-397 (429)
182 PRK13933 stationary phase surv 64.1 35 0.00076 31.8 7.8 25 8-34 15-39 (253)
183 TIGR01285 nifN nitrogenase mol 63.2 54 0.0012 33.4 9.7 35 88-132 364-398 (432)
184 COG2099 CobK Precorrin-6x redu 63.0 44 0.00096 30.9 8.0 105 11-132 119-229 (257)
185 PF05159 Capsule_synth: Capsul 62.9 42 0.00092 31.5 8.5 44 333-379 183-226 (269)
186 PRK04885 ppnK inorganic polyph 62.8 16 0.00035 34.3 5.4 53 352-424 36-94 (265)
187 TIGR01283 nifE nitrogenase mol 62.7 46 0.00099 34.1 9.3 35 87-131 385-419 (456)
188 PF07355 GRDB: Glycine/sarcosi 62.5 15 0.00033 35.5 5.2 48 77-131 60-117 (349)
189 PLN02470 acetolactate synthase 62.2 41 0.00089 35.7 9.1 28 351-378 76-109 (585)
190 cd07037 TPP_PYR_MenD Pyrimidin 61.5 89 0.0019 26.9 9.5 27 353-379 62-94 (162)
191 PRK13932 stationary phase surv 61.2 75 0.0016 29.7 9.4 24 8-33 20-43 (257)
192 PF02571 CbiJ: Precorrin-6x re 61.1 62 0.0013 30.1 9.0 102 10-132 119-226 (249)
193 cd01965 Nitrogenase_MoFe_beta_ 61.0 47 0.001 33.7 8.9 35 88-132 362-396 (428)
194 cd01423 MGS_CPS_I_III Methylgl 60.8 37 0.0008 27.2 6.6 84 8-130 14-106 (116)
195 TIGR00087 surE 5'/3'-nucleotid 60.1 56 0.0012 30.3 8.4 27 8-36 15-41 (244)
196 cd07038 TPP_PYR_PDC_IPDC_like 59.6 65 0.0014 27.6 8.3 28 352-379 60-93 (162)
197 cd01974 Nitrogenase_MoFe_beta 58.9 80 0.0017 32.1 10.2 35 88-132 368-402 (435)
198 PF05728 UPF0227: Uncharacteri 57.3 20 0.00044 31.7 4.9 43 86-135 46-91 (187)
199 cd01980 Chlide_reductase_Y Chl 57.1 42 0.00091 33.9 7.7 27 104-133 350-376 (416)
200 COG1618 Predicted nucleotide k 56.3 30 0.00066 29.7 5.4 46 1-52 14-59 (179)
201 TIGR01470 cysG_Nterm siroheme 56.2 1.5E+02 0.0033 26.6 11.8 148 266-444 10-165 (205)
202 PRK13935 stationary phase surv 54.9 1.2E+02 0.0026 28.2 9.6 24 8-33 15-38 (253)
203 PF02571 CbiJ: Precorrin-6x re 54.3 72 0.0016 29.7 8.2 40 86-132 55-100 (249)
204 PRK14077 pnk inorganic polypho 53.9 27 0.00057 33.3 5.3 53 352-424 65-121 (287)
205 TIGR00725 conserved hypothetic 53.9 60 0.0013 27.8 7.1 39 341-379 82-123 (159)
206 COG0299 PurN Folate-dependent 53.7 37 0.00079 30.1 5.6 106 282-420 66-172 (200)
207 PRK13982 bifunctional SbtC-lik 53.6 38 0.00081 34.8 6.6 21 10-31 286-306 (475)
208 PRK02649 ppnK inorganic polyph 53.2 25 0.00055 33.8 5.1 53 352-424 69-125 (305)
209 PRK00346 surE 5'(3')-nucleotid 53.2 47 0.001 30.9 6.7 24 8-33 15-38 (250)
210 PRK13931 stationary phase surv 52.9 1.1E+02 0.0023 28.7 9.1 30 104-133 87-129 (261)
211 PRK10964 ADP-heptose:LPS hepto 52.8 1E+02 0.0022 29.7 9.5 131 267-422 179-321 (322)
212 PRK12446 undecaprenyldiphospho 52.7 72 0.0016 31.4 8.5 32 346-377 86-120 (352)
213 PRK14478 nitrogenase molybdenu 52.7 68 0.0015 33.1 8.5 33 88-130 384-416 (475)
214 TIGR00347 bioD dethiobiotin sy 52.5 1E+02 0.0022 26.2 8.6 26 1-27 7-32 (166)
215 cd07035 TPP_PYR_POX_like Pyrim 52.1 1.4E+02 0.0031 25.0 10.1 28 352-379 60-93 (155)
216 PF04464 Glyphos_transf: CDP-G 52.1 11 0.00025 37.2 2.7 115 332-463 251-368 (369)
217 COG0052 RpsB Ribosomal protein 51.7 73 0.0016 29.3 7.4 30 105-134 157-188 (252)
218 PRK09620 hypothetical protein; 51.3 46 0.001 30.5 6.3 20 10-30 33-52 (229)
219 cd01421 IMPCH Inosine monophos 51.0 58 0.0013 28.7 6.5 37 8-52 12-48 (187)
220 cd02067 B12-binding B12 bindin 50.9 1.3E+02 0.0027 24.0 9.3 31 1-32 8-38 (119)
221 TIGR01918 various_sel_PB selen 50.7 29 0.00062 34.6 5.0 49 77-132 56-114 (431)
222 COG2874 FlaH Predicted ATPases 50.6 1.2E+02 0.0026 27.5 8.4 89 3-118 39-137 (235)
223 TIGR01917 gly_red_sel_B glycin 50.6 29 0.00062 34.6 5.0 49 77-132 56-114 (431)
224 PRK04539 ppnK inorganic polyph 50.1 32 0.00069 32.9 5.3 53 352-424 69-125 (296)
225 PLN02929 NADH kinase 49.0 33 0.00072 32.8 5.1 65 352-424 65-138 (301)
226 PRK03372 ppnK inorganic polyph 48.9 34 0.00073 32.9 5.2 53 352-424 73-129 (306)
227 TIGR03878 thermo_KaiC_2 KaiC d 48.8 2.3E+02 0.005 26.4 11.5 32 1-33 45-76 (259)
228 PRK13934 stationary phase surv 48.7 1.5E+02 0.0032 27.9 9.2 25 7-33 14-38 (266)
229 PRK07710 acetolactate synthase 48.2 53 0.0011 34.8 7.1 27 352-378 79-111 (571)
230 cd07025 Peptidase_S66 LD-Carbo 47.7 39 0.00084 32.1 5.5 75 278-380 45-121 (282)
231 COG0438 RfaG Glycosyltransfera 47.6 2.4E+02 0.0051 26.3 16.7 80 333-424 257-343 (381)
232 PRK01911 ppnK inorganic polyph 47.5 36 0.00078 32.5 5.1 53 352-424 65-121 (292)
233 PRK04940 hypothetical protein; 46.7 55 0.0012 28.7 5.7 31 104-134 60-91 (180)
234 COG1422 Predicted membrane pro 46.6 31 0.00067 30.5 4.1 88 363-470 24-111 (201)
235 PF01075 Glyco_transf_9: Glyco 46.3 76 0.0017 29.1 7.2 97 265-377 104-208 (247)
236 COG2099 CobK Precorrin-6x redu 45.9 1.5E+02 0.0033 27.5 8.6 41 85-132 54-100 (257)
237 PRK01185 ppnK inorganic polyph 45.7 39 0.00085 31.9 5.0 53 352-424 53-106 (271)
238 PRK03378 ppnK inorganic polyph 45.5 37 0.00081 32.4 4.9 53 352-424 64-120 (292)
239 COG1066 Sms Predicted ATP-depe 45.3 45 0.00098 33.3 5.4 35 1-37 102-136 (456)
240 PRK02910 light-independent pro 45.2 32 0.0007 35.9 4.9 35 88-132 353-387 (519)
241 KOG1250 Threonine/serine dehyd 45.2 3.3E+02 0.0071 27.2 13.3 60 354-424 247-317 (457)
242 TIGR02655 circ_KaiC circadian 45.2 30 0.00066 35.8 4.6 37 1-38 272-308 (484)
243 TIGR02195 heptsyl_trn_II lipop 45.0 97 0.0021 30.0 8.0 84 8-133 195-278 (334)
244 cd01121 Sms Sms (bacterial rad 45.0 2.3E+02 0.005 28.2 10.5 36 1-37 91-126 (372)
245 KOG0853 Glycosyltransferase [C 44.9 16 0.00034 37.4 2.4 60 363-434 381-440 (495)
246 TIGR02853 spore_dpaA dipicolin 44.8 2.8E+02 0.0061 26.3 20.7 100 7-130 11-118 (287)
247 PRK14477 bifunctional nitrogen 44.5 1.1E+02 0.0023 34.6 9.0 37 86-132 378-414 (917)
248 cd00316 Oxidoreductase_nitroge 43.9 1.6E+02 0.0034 29.4 9.5 36 87-132 338-373 (399)
249 PRK03501 ppnK inorganic polyph 43.9 50 0.0011 31.0 5.4 54 352-424 40-98 (264)
250 cd01976 Nitrogenase_MoFe_alpha 43.6 31 0.00068 34.9 4.4 37 86-132 358-394 (421)
251 PRK08322 acetolactate synthase 43.4 67 0.0015 33.7 7.0 27 352-378 64-96 (547)
252 PRK00994 F420-dependent methyl 43.2 50 0.0011 30.1 4.9 42 87-135 50-97 (277)
253 TIGR01286 nifK nitrogenase mol 43.2 34 0.00074 35.6 4.6 35 88-132 428-462 (515)
254 CHL00076 chlB photochlorophyll 43.1 35 0.00075 35.6 4.7 36 87-132 364-399 (513)
255 PF04127 DFP: DNA / pantothena 42.7 25 0.00055 31.0 3.1 22 9-31 32-53 (185)
256 cd07062 Peptidase_S66_mccF_lik 42.6 45 0.00098 32.1 5.1 74 279-380 50-125 (308)
257 PRK14075 pnk inorganic polypho 42.5 50 0.0011 30.9 5.2 53 352-424 42-95 (256)
258 PF06506 PrpR_N: Propionate ca 42.3 80 0.0017 27.5 6.3 120 4-137 17-155 (176)
259 PRK08506 replicative DNA helic 42.2 1.2E+02 0.0027 31.2 8.5 36 1-37 201-236 (472)
260 cd01981 Pchlide_reductase_B Pc 42.1 41 0.00088 34.2 5.0 36 88-133 361-396 (430)
261 cd03412 CbiK_N Anaerobic cobal 42.0 1E+02 0.0022 25.2 6.5 37 267-303 2-40 (127)
262 PF01075 Glyco_transf_9: Glyco 41.6 54 0.0012 30.1 5.4 29 104-134 183-211 (247)
263 TIGR01278 DPOR_BchB light-inde 41.4 33 0.00072 35.7 4.2 36 88-133 355-390 (511)
264 PF00282 Pyridoxal_deC: Pyrido 41.3 85 0.0019 31.2 7.0 70 352-423 104-191 (373)
265 KOG1111 N-acetylglucosaminyltr 41.1 3.7E+02 0.0079 26.6 16.4 83 281-377 210-301 (426)
266 PF03808 Glyco_tran_WecB: Glyc 40.4 2.4E+02 0.0053 24.3 9.4 87 203-305 50-136 (172)
267 PRK05234 mgsA methylglyoxal sy 39.7 1.2E+02 0.0026 25.4 6.6 84 7-132 17-113 (142)
268 cd01968 Nitrogenase_NifE_I Nit 39.6 1.7E+02 0.0036 29.5 8.9 35 87-131 346-380 (410)
269 PRK02231 ppnK inorganic polyph 39.4 49 0.0011 31.2 4.6 51 352-422 43-97 (272)
270 TIGR00173 menD 2-succinyl-5-en 39.1 2.2E+02 0.0048 28.8 9.8 26 352-377 64-95 (432)
271 PRK10916 ADP-heptose:LPS hepto 39.1 60 0.0013 31.8 5.5 88 8-133 201-288 (348)
272 COG0041 PurE Phosphoribosylcar 38.9 2.4E+02 0.0053 23.9 11.3 141 268-445 4-152 (162)
273 cd01715 ETF_alpha The electron 38.7 65 0.0014 27.7 5.1 43 84-133 70-115 (168)
274 PRK06321 replicative DNA helic 38.4 1.9E+02 0.004 29.9 9.0 36 1-36 235-270 (472)
275 COG0859 RfaF ADP-heptose:LPS h 38.3 3.8E+02 0.0083 26.0 17.2 95 266-377 175-276 (334)
276 PF02585 PIG-L: GlcNAc-PI de-N 38.3 2.1E+02 0.0045 23.0 7.9 24 83-113 86-109 (128)
277 PRK12311 rpsB 30S ribosomal pr 38.2 2E+02 0.0042 28.0 8.5 32 104-135 152-185 (326)
278 PF02951 GSH-S_N: Prokaryotic 38.1 32 0.0007 27.9 2.8 23 9-32 20-42 (119)
279 PF05225 HTH_psq: helix-turn-h 37.9 63 0.0014 21.0 3.6 27 409-438 1-27 (45)
280 PF01993 MTD: methylene-5,6,7, 37.8 90 0.002 28.6 5.7 42 87-135 49-96 (276)
281 PLN02935 Bifunctional NADH kin 37.7 64 0.0014 33.2 5.4 52 352-424 263-319 (508)
282 PRK08155 acetolactate synthase 37.6 1.8E+02 0.0039 30.8 9.1 27 352-378 77-109 (564)
283 PRK00923 sirohydrochlorin coba 37.0 2.1E+02 0.0046 23.1 7.6 29 266-294 2-30 (126)
284 cd01141 TroA_d Periplasmic bin 36.9 50 0.0011 28.8 4.2 29 104-132 69-99 (186)
285 cd00984 DnaB_C DnaB helicase C 36.6 1.8E+02 0.004 26.4 8.1 36 1-37 22-58 (242)
286 PRK03708 ppnK inorganic polyph 36.3 54 0.0012 31.0 4.4 53 352-424 58-113 (277)
287 PF09001 DUF1890: Domain of un 36.2 31 0.00067 28.5 2.4 32 7-39 14-45 (139)
288 COG0859 RfaF ADP-heptose:LPS h 35.9 98 0.0021 30.1 6.4 83 8-133 196-278 (334)
289 TIGR02015 BchY chlorophyllide 35.8 39 0.00085 34.2 3.6 26 104-132 355-380 (422)
290 PRK01231 ppnK inorganic polyph 35.8 69 0.0015 30.7 5.1 53 352-424 63-119 (295)
291 PRK12315 1-deoxy-D-xylulose-5- 35.6 5E+02 0.011 27.6 12.0 53 357-421 524-580 (581)
292 TIGR00416 sms DNA repair prote 35.4 66 0.0014 32.9 5.2 36 1-37 103-138 (454)
293 PRK06276 acetolactate synthase 35.3 1.1E+02 0.0024 32.5 7.2 27 352-378 64-96 (586)
294 COG1703 ArgK Putative periplas 34.9 4.2E+02 0.0091 25.5 9.8 32 1-33 60-91 (323)
295 PRK13010 purU formyltetrahydro 34.7 2E+02 0.0043 27.5 8.0 103 285-421 159-263 (289)
296 PRK14076 pnk inorganic polypho 34.6 65 0.0014 34.1 5.1 53 352-424 349-405 (569)
297 COG1484 DnaC DNA replication p 34.5 39 0.00085 31.5 3.2 37 1-38 114-150 (254)
298 cd01985 ETF The electron trans 34.5 85 0.0018 27.4 5.2 41 85-132 79-122 (181)
299 PRK06456 acetolactate synthase 34.4 2E+02 0.0044 30.4 9.0 26 353-378 70-101 (572)
300 PRK06067 flagellar accessory p 34.2 65 0.0014 29.4 4.6 34 1-35 34-67 (234)
301 PRK05595 replicative DNA helic 34.1 1.6E+02 0.0034 30.1 7.7 36 1-37 210-246 (444)
302 COG2085 Predicted dinucleotide 33.6 1.9E+02 0.0041 26.1 7.1 22 10-32 14-35 (211)
303 PRK09219 xanthine phosphoribos 32.9 85 0.0019 27.8 4.9 30 104-133 50-81 (189)
304 PRK04328 hypothetical protein; 32.6 4E+02 0.0087 24.6 10.4 35 1-36 32-66 (249)
305 PRK07525 sulfoacetaldehyde ace 32.5 1.6E+02 0.0034 31.4 7.7 27 352-378 69-101 (588)
306 PRK11823 DNA repair protein Ra 32.4 93 0.002 31.8 5.7 36 1-37 89-124 (446)
307 COG0503 Apt Adenine/guanine ph 32.4 96 0.0021 27.2 5.1 29 104-132 53-83 (179)
308 TIGR01862 N2-ase-Ialpha nitrog 32.1 51 0.0011 33.6 3.8 34 88-131 378-411 (443)
309 PRK09165 replicative DNA helic 32.0 1.8E+02 0.0039 30.2 7.8 37 1-37 226-276 (497)
310 TIGR01284 alt_nitrog_alph nitr 32.0 47 0.001 34.1 3.5 34 88-131 386-419 (457)
311 PRK08199 thiamine pyrophosphat 31.9 1.5E+02 0.0033 31.2 7.5 27 352-378 72-104 (557)
312 PRK00090 bioD dithiobiotin syn 31.9 2.8E+02 0.0061 24.9 8.4 26 2-28 10-35 (222)
313 PRK08266 hypothetical protein; 31.4 1.9E+02 0.004 30.4 8.0 26 353-378 70-101 (542)
314 PRK13011 formyltetrahydrofolat 31.4 2.2E+02 0.0047 27.1 7.7 102 285-420 155-258 (286)
315 PF00862 Sucrose_synth: Sucros 31.4 50 0.0011 33.9 3.4 32 104-135 401-434 (550)
316 PRK07773 replicative DNA helic 30.7 2.1E+02 0.0045 32.3 8.5 37 1-37 226-262 (886)
317 cd01977 Nitrogenase_VFe_alpha 30.5 51 0.0011 33.3 3.5 32 90-131 351-382 (415)
318 PRK11199 tyrA bifunctional cho 30.2 2.1E+02 0.0046 28.4 7.8 19 11-30 113-131 (374)
319 PF06180 CbiK: Cobalt chelatas 30.2 76 0.0016 29.8 4.3 39 267-305 2-43 (262)
320 PRK06849 hypothetical protein; 30.2 1.8E+02 0.004 28.9 7.4 25 7-32 15-39 (389)
321 PRK11269 glyoxylate carboligas 30.0 1.4E+02 0.0031 31.7 7.0 27 352-378 69-101 (591)
322 PRK10422 lipopolysaccharide co 30.0 2.2E+02 0.0047 27.9 7.8 28 104-133 262-289 (352)
323 TIGR02201 heptsyl_trn_III lipo 30.0 2.8E+02 0.0062 26.9 8.6 28 104-133 260-287 (344)
324 PRK00881 purH bifunctional pho 29.9 1.8E+02 0.0038 30.2 7.1 37 8-52 16-52 (513)
325 PRK05858 hypothetical protein; 29.7 1.8E+02 0.004 30.5 7.6 25 354-378 70-100 (542)
326 TIGR00355 purH phosphoribosyla 29.6 1.8E+02 0.0039 30.0 7.0 37 8-52 12-48 (511)
327 PF14626 RNase_Zc3h12a_2: Zc3h 29.4 63 0.0014 26.0 3.0 32 6-38 9-40 (122)
328 cd03789 GT1_LPS_heptosyltransf 29.1 2.5E+02 0.0054 26.3 7.8 31 7-38 140-170 (279)
329 PRK08527 acetolactate synthase 29.0 2.3E+02 0.005 29.9 8.3 27 352-378 67-99 (563)
330 cd01714 ETF_beta The electron 28.9 1.1E+02 0.0024 27.4 5.0 39 85-130 96-140 (202)
331 TIGR02482 PFKA_ATP 6-phosphofr 28.5 59 0.0013 31.2 3.3 37 346-382 86-126 (301)
332 TIGR01860 VNFD nitrogenase van 28.2 68 0.0015 32.9 3.9 24 104-130 397-420 (461)
333 PLN02293 adenine phosphoribosy 28.0 1.7E+02 0.0036 25.9 5.9 29 104-132 62-92 (187)
334 COG2910 Putative NADH-flavin r 28.0 54 0.0012 28.9 2.6 19 11-30 15-33 (211)
335 PRK06048 acetolactate synthase 28.0 1.3E+02 0.0028 31.7 6.2 26 353-378 72-103 (561)
336 PRK08978 acetolactate synthase 27.9 1.5E+02 0.0033 31.2 6.6 126 254-424 5-149 (548)
337 PRK08057 cobalt-precorrin-6x r 27.8 4.8E+02 0.01 24.2 9.1 100 11-132 119-222 (248)
338 TIGR00118 acolac_lg acetolacta 27.8 3.4E+02 0.0073 28.6 9.2 27 352-378 65-97 (558)
339 TIGR03880 KaiC_arch_3 KaiC dom 27.6 1.5E+02 0.0033 26.7 5.9 37 1-38 25-61 (224)
340 PRK09302 circadian clock prote 27.6 1.2E+02 0.0026 31.6 5.7 36 1-37 282-317 (509)
341 COG0003 ArsA Predicted ATPase 27.6 3.1E+02 0.0068 26.6 8.1 29 3-32 13-41 (322)
342 PF02826 2-Hacid_dh_C: D-isome 27.5 4.1E+02 0.0088 23.0 8.5 102 266-418 37-142 (178)
343 PRK08617 acetolactate synthase 27.4 1.9E+02 0.0041 30.5 7.2 26 353-378 69-100 (552)
344 PRK09423 gldA glycerol dehydro 27.3 4.8E+02 0.01 25.7 9.7 41 88-135 75-118 (366)
345 cd01017 AdcA Metal binding pro 27.0 4.7E+02 0.01 24.6 9.3 40 87-133 210-251 (282)
346 PRK07524 hypothetical protein; 27.0 2.6E+02 0.0057 29.3 8.2 25 354-378 67-97 (535)
347 COG1927 Mtd Coenzyme F420-depe 26.9 1.2E+02 0.0025 27.2 4.5 41 88-135 51-97 (277)
348 PF09334 tRNA-synt_1g: tRNA sy 26.6 47 0.001 33.2 2.4 27 3-30 16-45 (391)
349 PF01497 Peripla_BP_2: Peripla 26.6 89 0.0019 28.3 4.2 38 91-135 54-93 (238)
350 TIGR02370 pyl_corrinoid methyl 26.6 3.4E+02 0.0075 24.0 7.8 33 2-35 94-126 (197)
351 cd01124 KaiC KaiC is a circadi 26.3 1.2E+02 0.0026 26.2 4.8 35 1-36 8-42 (187)
352 COG0801 FolK 7,8-dihydro-6-hyd 26.3 1.4E+02 0.003 25.6 4.8 33 268-300 3-35 (160)
353 cd08194 Fe-ADH6 Iron-containin 26.2 1.8E+02 0.004 28.8 6.6 11 370-380 121-131 (375)
354 COG0541 Ffh Signal recognition 26.2 1.5E+02 0.0033 29.9 5.7 36 2-38 110-145 (451)
355 TIGR01282 nifD nitrogenase mol 26.1 44 0.00095 34.4 2.1 35 87-131 394-428 (466)
356 cd02070 corrinoid_protein_B12- 26.1 2.4E+02 0.0052 25.1 6.7 29 2-31 92-120 (201)
357 PLN02880 tyrosine decarboxylas 25.8 1.8E+02 0.0038 30.2 6.5 69 352-421 147-234 (490)
358 PRK10964 ADP-heptose:LPS hepto 25.7 4.2E+02 0.009 25.4 8.9 36 2-37 10-46 (322)
359 PF08030 NAD_binding_6: Ferric 25.7 70 0.0015 26.9 3.0 39 267-305 3-46 (156)
360 TIGR00665 DnaB replicative DNA 25.6 3.3E+02 0.0071 27.6 8.4 36 1-36 204-239 (434)
361 cd03115 SRP The signal recogni 25.5 4.2E+02 0.0091 22.5 8.4 33 1-34 9-41 (173)
362 PF02776 TPP_enzyme_N: Thiamin 25.4 4.3E+02 0.0093 22.6 8.3 28 352-379 65-98 (172)
363 KOG0780 Signal recognition par 25.4 1.6E+02 0.0035 29.3 5.5 35 2-37 111-145 (483)
364 PRK04148 hypothetical protein; 25.3 2.4E+02 0.0052 23.4 5.9 19 10-29 29-47 (134)
365 PF06792 UPF0261: Uncharacteri 25.1 7.1E+02 0.015 25.0 10.1 98 265-382 184-281 (403)
366 PF00391 PEP-utilizers: PEP-ut 25.1 1.2E+02 0.0027 22.3 3.9 28 104-131 30-59 (80)
367 PRK05986 cob(I)alamin adenolsy 25.0 4.9E+02 0.011 23.1 8.2 28 1-29 31-58 (191)
368 PRK06882 acetolactate synthase 24.9 2.3E+02 0.0051 29.9 7.4 27 352-378 68-100 (574)
369 COG2861 Uncharacterized protei 24.9 98 0.0021 28.4 3.8 42 83-130 134-178 (250)
370 COG3563 KpsC Capsule polysacch 24.8 4E+02 0.0086 27.4 8.2 99 266-379 143-252 (671)
371 PF03720 UDPG_MGDP_dh_C: UDP-g 24.4 89 0.0019 24.5 3.2 30 7-37 17-46 (106)
372 cd01018 ZntC Metal binding pro 24.3 5.8E+02 0.013 23.7 12.1 42 87-135 207-250 (266)
373 cd00763 Bacterial_PFK Phosphof 24.2 78 0.0017 30.6 3.3 37 346-382 87-126 (317)
374 PRK08410 2-hydroxyacid dehydro 24.1 4.2E+02 0.009 25.5 8.4 100 265-418 145-247 (311)
375 COG1737 RpiR Transcriptional r 24.1 2.7E+02 0.0059 26.3 7.0 90 256-384 123-217 (281)
376 TIGR03877 thermo_KaiC_1 KaiC d 24.0 5.5E+02 0.012 23.4 11.1 35 1-36 30-64 (237)
377 TIGR01861 ANFD nitrogenase iro 24.0 84 0.0018 32.8 3.7 31 91-131 392-422 (513)
378 PLN02948 phosphoribosylaminoim 24.0 8.9E+02 0.019 25.7 12.8 85 354-445 468-560 (577)
379 PF02441 Flavoprotein: Flavopr 23.8 69 0.0015 26.2 2.6 34 4-38 11-44 (129)
380 PF02558 ApbA: Ketopantoate re 23.8 79 0.0017 26.4 3.0 33 11-49 12-44 (151)
381 cd08191 HHD 6-hydroxyhexanoate 23.6 2.3E+02 0.0049 28.3 6.7 43 256-301 14-56 (386)
382 PTZ00182 3-methyl-2-oxobutanat 23.4 7.2E+02 0.016 24.5 11.5 53 356-421 295-355 (355)
383 cd01147 HemV-2 Metal binding p 23.4 1.2E+02 0.0026 27.9 4.5 37 90-133 67-106 (262)
384 cd07766 DHQ_Fe-ADH Dehydroquin 23.4 5.4E+02 0.012 24.8 9.2 28 352-380 79-113 (332)
385 PF04244 DPRP: Deoxyribodipyri 23.2 91 0.002 28.5 3.4 25 5-30 47-71 (224)
386 PF03641 Lysine_decarbox: Poss 23.1 1E+02 0.0023 25.4 3.5 32 346-378 50-91 (133)
387 KOG2941 Beta-1,4-mannosyltrans 22.9 7.4E+02 0.016 24.4 26.9 146 265-438 253-424 (444)
388 TIGR02931 anfK_nitrog Fe-only 22.7 1.3E+02 0.0028 30.9 4.8 26 104-132 388-413 (461)
389 PRK06270 homoserine dehydrogen 22.7 7.2E+02 0.016 24.2 10.0 58 342-400 80-149 (341)
390 PRK06457 pyruvate dehydrogenas 22.7 4.9E+02 0.011 27.4 9.2 27 352-378 65-97 (549)
391 PLN02727 NAD kinase 22.6 1.5E+02 0.0033 33.0 5.3 53 352-424 744-800 (986)
392 PRK07979 acetolactate synthase 22.5 3.9E+02 0.0083 28.3 8.5 27 352-378 68-100 (574)
393 cd01973 Nitrogenase_VFe_beta_l 22.4 1.3E+02 0.0029 30.8 4.8 26 104-132 381-406 (454)
394 TIGR01744 XPRTase xanthine pho 22.4 1.7E+02 0.0037 26.0 4.9 29 104-132 50-80 (191)
395 PRK08760 replicative DNA helic 22.3 3.3E+02 0.0072 28.1 7.6 35 1-35 238-272 (476)
396 PRK05562 precorrin-2 dehydroge 22.3 6E+02 0.013 23.2 9.9 152 259-442 20-178 (223)
397 PLN02590 probable tyrosine dec 22.1 2.8E+02 0.0061 29.1 7.1 69 352-421 195-282 (539)
398 cd00561 CobA_CobO_BtuR ATP:cor 22.1 5E+02 0.011 22.2 10.0 28 1-29 11-38 (159)
399 PF02310 B12-binding: B12 bind 22.1 1.8E+02 0.0039 23.0 4.7 29 2-31 10-38 (121)
400 TIGR02329 propionate_PrpR prop 22.1 3.6E+02 0.0077 28.3 7.9 38 90-134 135-172 (526)
401 TIGR02483 PFK_mixed phosphofru 22.0 92 0.002 30.3 3.4 37 346-382 89-128 (324)
402 TIGR02638 lactal_redase lactal 22.0 1.9E+02 0.0041 28.8 5.7 11 370-380 129-139 (379)
403 PRK07282 acetolactate synthase 22.0 3.8E+02 0.0083 28.3 8.3 27 352-378 74-106 (566)
404 TIGR00745 apbA_panE 2-dehydrop 21.9 90 0.002 29.4 3.3 33 11-49 5-37 (293)
405 cd01971 Nitrogenase_VnfN_like 21.7 1.3E+02 0.0027 30.6 4.4 25 105-132 372-396 (427)
406 TIGR02193 heptsyl_trn_I lipopo 21.7 3.6E+02 0.0079 25.7 7.6 28 104-133 254-281 (319)
407 PRK13059 putative lipid kinase 21.7 3.5E+02 0.0075 25.8 7.3 28 353-380 58-91 (295)
408 cd08171 GlyDH-like2 Glycerol d 21.7 6.6E+02 0.014 24.5 9.4 33 104-136 78-113 (345)
409 PRK06732 phosphopantothenate-- 21.6 1.5E+02 0.0032 27.2 4.5 20 10-30 30-49 (229)
410 PRK08979 acetolactate synthase 21.6 3.8E+02 0.0082 28.4 8.2 119 285-424 8-153 (572)
411 PRK00039 ruvC Holliday junctio 21.5 2.8E+02 0.006 23.9 5.9 46 81-133 45-105 (164)
412 PRK04761 ppnK inorganic polyph 21.5 87 0.0019 29.1 2.9 27 352-378 26-56 (246)
413 COG0299 PurN Folate-dependent 21.3 1.8E+02 0.004 25.8 4.7 30 104-133 29-58 (200)
414 PF01370 Epimerase: NAD depend 21.1 3.8E+02 0.0082 23.8 7.3 38 11-52 13-50 (236)
415 PRK14071 6-phosphofructokinase 21.1 95 0.0021 30.7 3.3 37 346-382 102-142 (360)
416 PF08323 Glyco_transf_5: Starc 21.1 74 0.0016 29.4 2.4 22 9-31 22-43 (245)
417 PRK02261 methylaspartate mutas 21.1 1.5E+02 0.0033 24.6 4.0 50 1-52 12-61 (137)
418 TIGR00655 PurU formyltetrahydr 21.1 3E+02 0.0065 26.1 6.5 105 282-420 147-253 (280)
419 PLN02891 IMP cyclohydrolase 21.1 2.6E+02 0.0057 29.0 6.4 37 8-52 34-70 (547)
420 cd03818 GT1_ExpC_like This fam 21.1 5.2E+02 0.011 25.5 8.8 25 281-305 10-34 (396)
421 PF04493 Endonuclease_5: Endon 21.0 1.2E+02 0.0025 27.4 3.5 43 85-132 75-124 (206)
422 COG2894 MinD Septum formation 20.7 3.7E+02 0.0079 24.7 6.4 29 2-31 13-41 (272)
423 PRK15454 ethanol dehydrogenase 20.6 4.6E+02 0.01 26.2 8.2 10 371-380 148-157 (395)
424 PRK07064 hypothetical protein; 20.6 5.1E+02 0.011 27.1 8.9 27 352-378 67-99 (544)
425 PF02016 Peptidase_S66: LD-car 20.6 93 0.002 29.6 3.0 73 279-379 46-120 (284)
426 cd01840 SGNH_hydrolase_yrhL_li 20.5 2.5E+02 0.0054 23.4 5.5 39 265-304 50-88 (150)
427 PTZ00119 40S ribosomal protein 20.5 3.6E+02 0.0078 25.3 6.5 81 382-471 61-143 (302)
428 TIGR00421 ubiX_pad polyprenyl 20.5 1.2E+02 0.0026 26.6 3.5 28 9-37 15-42 (181)
429 PF01297 TroA: Periplasmic sol 20.5 4.1E+02 0.0089 24.5 7.4 81 20-133 148-230 (256)
430 PF00551 Formyl_trans_N: Formy 20.5 3.5E+02 0.0076 23.5 6.5 42 85-133 67-109 (181)
431 PRK06725 acetolactate synthase 20.4 2.6E+02 0.0056 29.6 6.6 27 352-378 78-110 (570)
432 PRK03202 6-phosphofructokinase 20.3 1E+02 0.0022 30.0 3.2 37 346-382 88-127 (320)
433 PRK07206 hypothetical protein; 20.3 2.5E+02 0.0054 28.1 6.3 23 7-30 12-34 (416)
434 PF13450 NAD_binding_8: NAD(P) 20.2 1.3E+02 0.0027 21.4 3.0 20 10-30 9-28 (68)
435 PF05693 Glycogen_syn: Glycoge 20.1 1.8E+02 0.0038 30.9 5.0 38 106-143 143-183 (633)
No 1
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.1e-63 Score=502.96 Aligned_cols=447 Identities=36% Similarity=0.612 Sum_probs=350.1
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQ 80 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (481)
|++||++|++.||+.|.. +|+.|||++++.+..++.+......++++..+|+| ..++++.+.+.....+.+....+..
T Consensus 18 paqGHi~P~l~LAk~La~-~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P-~~~~lPdG~~~~~~~~~~~~~~~~~ 95 (477)
T PLN02863 18 PAQGHMIPLLDLTHRLAL-RGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFP-SHPSIPSGVENVKDLPPSGFPLMIH 95 (477)
T ss_pred cccchHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCC-CcCCCCCCCcChhhcchhhHHHHHH
Confidence 799999999999999999 99999999999888777653211146888888887 4567887766554444333345666
Q ss_pred HHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhhcCCCCCC--CC-C
Q 042731 81 ASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHRST--DS-D 157 (481)
Q Consensus 81 ~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~--~~-~ 157 (481)
......+.+.+++++.. . +|+|||+|.+.+|+..+|+++|||++.|++++++.++.++++....+.... .. .
T Consensus 96 a~~~~~~~~~~~l~~~~----~-~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~~ 170 (477)
T PLN02863 96 ALGELYAPLLSWFRSHP----S-PPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTKINPDDQNE 170 (477)
T ss_pred HHHHhHHHHHHHHHhCC----C-CCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccccccccccccc
Confidence 66666777777777631 2 679999999999999999999999999999999999888877654443211 11 1
Q ss_pred cc---ccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHhhcC-CCeeeec
Q 042731 158 EF---LLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRKFG-RPVWPIG 233 (481)
Q Consensus 158 ~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~vG 233 (481)
.. .+|+++. ++..+++.++............+.........++++++|||++||+.++++++..+. ++++.||
T Consensus 171 ~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~v~~IG 247 (477)
T PLN02863 171 ILSFSKIPNCPK---YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHDRVWAVG 247 (477)
T ss_pred ccccCCCCCCCC---cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCCCeEEeC
Confidence 11 3566655 777788776653322333444454544455677889999999999999999988765 6799999
Q ss_pred ccccCccccc---cccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCC
Q 042731 234 PVLLSTESRA---GARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDI 310 (481)
Q Consensus 234 pl~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 310 (481)
|+........ .+.......++++.+||+.++++++|||||||+...+.+++.+++.+|+.++++|||+++.... .
T Consensus 248 PL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~--~ 325 (477)
T PLN02863 248 PILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVN--E 325 (477)
T ss_pred CCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcc--c
Confidence 9975321000 0011111135689999999988999999999999889999999999999999999999985420 0
Q ss_pred cchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHHH
Q 042731 311 NSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLL 390 (481)
Q Consensus 311 ~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v 390 (481)
.... ..+|+++.++++ +.|+++.+|+||.++|+|++|++|||||||||++||+++|||||++|++.||+.||+++
T Consensus 326 ~~~~---~~lp~~~~~r~~--~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v 400 (477)
T PLN02863 326 ESDY---SNIPSGFEDRVA--GRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLL 400 (477)
T ss_pred ccch---hhCCHHHHHHhc--cCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHH
Confidence 0011 238899999888 88999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhcceEEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHhhh
Q 042731 391 EEEMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFLNAALIMR 470 (481)
Q Consensus 391 ~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~ 470 (481)
++.||+|+++..+....++.+++.++|+++|.+ +++||+||+++++.+++++ .+|||+.+++++|++.+.+..
T Consensus 401 ~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~---~~~~r~~a~~l~e~a~~Av----~~gGSS~~~l~~~v~~i~~~~ 473 (477)
T PLN02863 401 VDELKVAVRVCEGADTVPDSDELARVFMESVSE---NQVERERAKELRRAALDAI----KERGSSVKDLDGFVKHVVELG 473 (477)
T ss_pred HHhhceeEEeccCCCCCcCHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHh----ccCCcHHHHHHHHHHHHHHhc
Confidence 877799999964222356899999999999942 3389999999999999999 999999999999999998765
Q ss_pred h
Q 042731 471 Q 471 (481)
Q Consensus 471 ~ 471 (481)
-
T Consensus 474 ~ 474 (477)
T PLN02863 474 L 474 (477)
T ss_pred c
Confidence 3
No 2
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.6e-62 Score=493.33 Aligned_cols=452 Identities=33% Similarity=0.599 Sum_probs=343.6
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCC--CC--CCeEEEEecCCCCCCCCCCCCCCCCCCCC-Cch
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLP--QN--SSIHLLEIPFNSVEHDLPPCTENTDSIPY-HLF 75 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~--~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~ 75 (481)
|++||++|++.||+.|.. +|+.|||++++.+...+.+... .. ..++|+.+|+|...++++++.+.....+. ...
T Consensus 17 paqGHi~P~l~LAk~La~-~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~~~~~~~~~ 95 (491)
T PLN02534 17 MAQGHMIPMIDMARLLAE-RGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLDTLPSRDLL 95 (491)
T ss_pred CCcchHHHHHHHHHHHHh-CCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccccCCcHHHH
Confidence 799999999999999999 9999999999988666654221 00 23899999988555688876555444332 222
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhhcCCCCCC-
Q 042731 76 PKFLQASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHRST- 154 (481)
Q Consensus 76 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~- 154 (481)
..+......+.+.+.++|+.. .. +|+|||+|.+++|+..+|+++|||++.|++++++....+++...+.+....
T Consensus 96 ~~~~~~~~~l~~~l~~lL~~~----~~-pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~ 170 (491)
T PLN02534 96 RKFYDAVDKLQQPLERFLEQA----KP-PPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNAHLSVS 170 (491)
T ss_pred HHHHHHHHHhHHHHHHHHHhc----CC-CCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcccccCC
Confidence 344455556667777777653 11 679999999999999999999999999999999887765544433332111
Q ss_pred -CCCccccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHhhcCCCeeeec
Q 042731 155 -DSDEFLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRKFGRPVWPIG 233 (481)
Q Consensus 155 -~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vG 233 (481)
+.....+|++|....++..+++..+... .....+..........++++++|||.+||+.++++++..++++++.||
T Consensus 171 ~~~~~~~iPg~p~~~~l~~~dlp~~~~~~---~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v~~VG 247 (491)
T PLN02534 171 SDSEPFVVPGMPQSIEITRAQLPGAFVSL---PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKVWCVG 247 (491)
T ss_pred CCCceeecCCCCccccccHHHCChhhcCc---ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcEEEEC
Confidence 1122456777754446666666544221 112222222222334577999999999999999999887777899999
Q ss_pred ccccCccc--cc-cccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCC
Q 042731 234 PVLLSTES--RA-GARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDI 310 (481)
Q Consensus 234 pl~~~~~~--~~-~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 310 (481)
|+...... +. ...........+|.+|||+++++++|||||||......+++.+++.+|+.++++|||+++.....
T Consensus 248 PL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~-- 325 (491)
T PLN02534 248 PVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKH-- 325 (491)
T ss_pred cccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccc--
Confidence 99743210 00 00000011245799999999989999999999998999999999999999999999999843100
Q ss_pred cchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHHH
Q 042731 311 NSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLL 390 (481)
Q Consensus 311 ~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v 390 (481)
.+... ..+|++|.++++ +.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++
T Consensus 326 -~~~~~-~~~p~gf~~~~~--~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~ 401 (491)
T PLN02534 326 -SELEE-WLVKENFEERIK--GRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLI 401 (491)
T ss_pred -cchhh-hcCchhhHHhhc--cCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHH
Confidence 01110 136889988887 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcceEEeec------cC-C--c-ccCHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHH
Q 042731 391 EEEMGVCVEIAR------GM-S--C-EVLKEDLSAKIELVMNE-TEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAM 459 (481)
Q Consensus 391 ~~~lG~G~~~~~------~~-~--~-~~~~~~l~~~i~~vl~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~ 459 (481)
++.||+|+++.. +. + + .++.++|+++|+++|.+ .++|+++|+||++|++.+++++ .+|||+.+++
T Consensus 402 ~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av----~~GGSS~~nl 477 (491)
T PLN02534 402 VEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAM----ELGGSSHINL 477 (491)
T ss_pred HHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHh----cCCCcHHHHH
Confidence 999999998852 10 1 1 48999999999999973 3478899999999999999999 9999999999
Q ss_pred HHHHHHHHhhhh
Q 042731 460 DQFLNAALIMRQ 471 (481)
Q Consensus 460 ~~~~~~~~~~~~ 471 (481)
++|++.++++..
T Consensus 478 ~~fv~~i~~~~~ 489 (491)
T PLN02534 478 SILIQDVLKQQS 489 (491)
T ss_pred HHHHHHHHHHhc
Confidence 999999986543
No 3
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.1e-61 Score=485.21 Aligned_cols=445 Identities=28% Similarity=0.474 Sum_probs=336.2
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCC-CCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHH
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQN-SSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFL 79 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (481)
|++||++|++.||+.|.. +|+.|||++++.+..++.+..... .+++++.+|+| ..++++++.+...+.+......+.
T Consensus 15 paqGHi~P~l~LAk~La~-~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p-~~dglp~~~~~~~~~~~~~~~~~~ 92 (472)
T PLN02670 15 LAMGHLIPFLRLSKLLAQ-KGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLP-SVPGLPSSAESSTDVPYTKQQLLK 92 (472)
T ss_pred hhhhHHHHHHHHHHHHHh-CCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCC-ccCCCCCCcccccccchhhHHHHH
Confidence 789999999999999999 999999999998876666321111 46899999987 446787665443333221112344
Q ss_pred HHHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhhcCCCCC--CCCC
Q 042731 80 QASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHRS--TDSD 157 (481)
Q Consensus 80 ~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~--~~~~ 157 (481)
.....+.+.+.+++++. +++|||+|.+++|+..+|+++|||++.|++++++..+.+.++........ ....
T Consensus 93 ~~~~~~~~~~~~~l~~~-------~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 165 (472)
T PLN02670 93 KAFDLLEPPLTTFLETS-------KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGDLRSTAE 165 (472)
T ss_pred HHHHHhHHHHHHHHHhC-------CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccCCCccc
Confidence 55566777888888877 89999999999999999999999999999999888877654422111111 1011
Q ss_pred cc-ccCCC-CC--CCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHhhcCCCeeeec
Q 042731 158 EF-LLPDF-PE--ASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRKFGRPVWPIG 233 (481)
Q Consensus 158 ~~-~~p~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vG 233 (481)
.. .+|++ |. .+.++..+++.++............+.+......+++++++|||++||+.+++.++..+.++++.||
T Consensus 166 ~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~~~~v~~VG 245 (472)
T PLN02670 166 DFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLYRKPIIPIG 245 (472)
T ss_pred cccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhhCCCeEEEe
Confidence 11 13332 21 1224556677665432212222333334445567789999999999999999999876667899999
Q ss_pred ccccCccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcch
Q 042731 234 PVLLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSE 313 (481)
Q Consensus 234 pl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~ 313 (481)
|+...................++.+|||+++++++|||||||+...+.+++.+++.+|+.++++|||+++...+. .
T Consensus 246 Pl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~----~ 321 (472)
T PLN02670 246 FLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGT----T 321 (472)
T ss_pred cCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccc----c
Confidence 997531000000000001125799999999889999999999999999999999999999999999999853210 0
Q ss_pred hhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHHHHHH
Q 042731 314 FKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEE 393 (481)
Q Consensus 314 ~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~ 393 (481)
.+..+.+|++|.++++ +.++++.+|+||.+||+|++|++|||||||||++|++++|||||++|+..||+.||+++++.
T Consensus 322 ~~~~~~lp~~f~~~~~--~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~ 399 (472)
T PLN02670 322 QNALEMLPDGFEERVK--GRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGK 399 (472)
T ss_pred cchhhcCChHHHHhcc--CCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHc
Confidence 0100348999999998 88999999999999999999999999999999999999999999999999999999999865
Q ss_pred hcceEEeeccC-CcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHhhh
Q 042731 394 MGVCVEIARGM-SCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFLNAALIMR 470 (481)
Q Consensus 394 lG~G~~~~~~~-~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~ 470 (481)
|+|+.+...+ .+.++.++|.++|+++|.++ +|++||+||+++++.++ +.++ ..+++++|+++|..++
T Consensus 400 -g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~-~g~~~r~~a~~l~~~~~-------~~~~-~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 400 -KLGLEVPRDERDGSFTSDSVAESVRLAMVDD-AGEEIRDKAKEMRNLFG-------DMDR-NNRYVDELVHYLRENR 467 (472)
T ss_pred -CeeEEeeccccCCcCcHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHh-------Ccch-hHHHHHHHHHHHHHhc
Confidence 9999997521 23589999999999999886 78899999999999997 3355 7899999999998877
No 4
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.1e-61 Score=481.23 Aligned_cols=430 Identities=27% Similarity=0.392 Sum_probs=333.1
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQ 80 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (481)
|++||++|++.||+.|+. +|+.|||++++.+..++.+......++.+..+++| ..++++++.+.+.+.+......+..
T Consensus 14 paqGHi~P~l~LAk~La~-~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p-~~~glp~g~e~~~~~~~~~~~~~~~ 91 (453)
T PLN02764 14 FATGHMTPFLFLANKLAE-KGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVP-HVDGLPVGTETVSEIPVTSADLLMS 91 (453)
T ss_pred cccccHHHHHHHHHHHHh-CCCEEEEEeCcchhhhhcccccCCCCceEEEEECC-CcCCCCCcccccccCChhHHHHHHH
Confidence 789999999999999999 99999999999887666542100023334444443 2357877655544444333345666
Q ss_pred HHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhhcCCCCCCCCCccc
Q 042731 81 ASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHRSTDSDEFL 160 (481)
Q Consensus 81 ~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 160 (481)
....+.+.+.+++++. +|||||+|. +.|+..+|+++|||++.|++++++.++.+.+ +.... ...
T Consensus 92 a~~~~~~~~~~~l~~~-------~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-----~~~~~---~~~ 155 (453)
T PLN02764 92 AMDLTRDQVEVVVRAV-------EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-----PGGEL---GVP 155 (453)
T ss_pred HHHHhHHHHHHHHHhC-------CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-----ccccC---CCC
Confidence 6667778888899887 899999995 7899999999999999999999988777652 11000 012
Q ss_pred cCCCCCC-CccccCccChhhhc--CCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHhhcCCCeeeeccccc
Q 042731 161 LPDFPEA-STLHVTQISPYLRA--TDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRKFGRPVWPIGPVLL 237 (481)
Q Consensus 161 ~p~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGpl~~ 237 (481)
+|++|.. +.++..+++.+... ....+.+..++.+....+..++++++|||.+||+.++++++...+++++.|||+..
T Consensus 156 ~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPL~~ 235 (453)
T PLN02764 156 PPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLLTGPVFP 235 (453)
T ss_pred CCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCcEEEeccCcc
Confidence 4677632 12445555543221 11112344455555456778889999999999999999997754568999999975
Q ss_pred CccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhc
Q 042731 238 STESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKAN 317 (481)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~ 317 (481)
.... ....+.+|.+|||+++++++|||||||+...+.+++.+++.+|+.++.+|+|+++...+.+ +. .
T Consensus 236 ~~~~-------~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~---~~-~- 303 (453)
T PLN02764 236 EPDK-------TRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSS---TI-Q- 303 (453)
T ss_pred Cccc-------cccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCc---ch-h-
Confidence 3210 0113568999999999999999999999989999999999999999999999998642100 11 1
Q ss_pred CCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcce
Q 042731 318 KWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVC 397 (481)
Q Consensus 318 ~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G 397 (481)
..+|++|.++++ ++++++.+|+||.+||+|++|++|||||||||++|++++|||||++|+..||+.||+++++.+|+|
T Consensus 304 ~~lp~~f~~r~~--grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~g 381 (453)
T PLN02764 304 EALPEGFEERVK--GRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVS 381 (453)
T ss_pred hhCCcchHhhhc--cCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceE
Confidence 359999999998 889999999999999999999999999999999999999999999999999999999998767999
Q ss_pred EEeeccCCcccCHHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHhhh
Q 042731 398 VEIARGMSCEVLKEDLSAKIELVMNET-EKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFLNAALIMR 470 (481)
Q Consensus 398 ~~~~~~~~~~~~~~~l~~~i~~vl~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~ 470 (481)
+.+...+...++.++|.++|+++|+++ ++|+++|++++++++.+ .++||+.+++++|++++.+..
T Consensus 382 v~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~--------~~~GSS~~~l~~lv~~~~~~~ 447 (453)
T PLN02764 382 VEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETL--------ASPGLLTGYVDNFIESLQDLV 447 (453)
T ss_pred EEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH--------HhcCCHHHHHHHHHHHHHHhc
Confidence 998641113589999999999999875 47889999999999999 457889999999999988765
No 5
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.6e-61 Score=484.32 Aligned_cols=434 Identities=28% Similarity=0.495 Sum_probs=334.0
Q ss_pred CCCCChHHHHHHHHHHH-hCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHH
Q 042731 1 MAQGHIIPFLALARRLE-ETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFL 79 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~-~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (481)
|++||++|++.||+.|. . +|++|||++++.+..++.+...+..++++..+|++ ..+++++.. . +....+.
T Consensus 14 paqGHi~P~l~LAk~La~~-~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p-~~~glp~~~----~---~~~~~~~ 84 (481)
T PLN02992 14 PGMGHVIPVIELGKRLSAN-HGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSP-DISGLVDPS----A---HVVTKIG 84 (481)
T ss_pred cccchHHHHHHHHHHHHhC-CCcEEEEEeCCCchhhhhhccccCCCceEEECCCc-cccCCCCCC----c---cHHHHHH
Confidence 79999999999999998 7 89999999999876655332211146889998876 234554211 0 1112344
Q ss_pred HHHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhhc-CCCCC---CC
Q 042731 80 QASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLN-LPHRS---TD 155 (481)
Q Consensus 80 ~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~-~p~~~---~~ 155 (481)
.....+.+.+++++++.. . +|+|||+|.+++|+..+|+++|||++.|++++++..+.+.+.+.. .+... ..
T Consensus 85 ~~~~~~~~~~~~~l~~~~----~-~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~ 159 (481)
T PLN02992 85 VIMREAVPTLRSKIAEMH----Q-KPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEHTVQ 159 (481)
T ss_pred HHHHHhHHHHHHHHHhcC----C-CCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccccccC
Confidence 444556677788887651 1 689999999999999999999999999999998887665544321 11110 00
Q ss_pred CCccccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHhh--c----CCCe
Q 042731 156 SDEFLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRK--F----GRPV 229 (481)
Q Consensus 156 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~----~~~~ 229 (481)
.....+|+++. ++..+++..+.. ........+.+.......++++++|||.+||+.++++++.. + .+++
T Consensus 160 ~~~~~iPg~~~---l~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v 234 (481)
T PLN02992 160 RKPLAMPGCEP---VRFEDTLDAYLV--PDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPV 234 (481)
T ss_pred CCCcccCCCCc---cCHHHhhHhhcC--CCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCce
Confidence 11234677765 666666654332 12234455556566677899999999999999999998652 1 2579
Q ss_pred eeecccccCccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCC--
Q 042731 230 WPIGPVLLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIG-- 307 (481)
Q Consensus 230 ~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~-- 307 (481)
+.|||+...... ...+.+|.+|||+++++++|||||||....+.+++.+++.+|+.++++|||+++....
T Consensus 235 ~~VGPl~~~~~~--------~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~ 306 (481)
T PLN02992 235 YPIGPLCRPIQS--------SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGS 306 (481)
T ss_pred EEecCccCCcCC--------CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence 999999754210 1235679999999988999999999999999999999999999999999999975310
Q ss_pred -----CCCcc---hhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEeccc
Q 042731 308 -----FDINS---EFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPL 379 (481)
Q Consensus 308 -----~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~ 379 (481)
++-+. .....+.+|++|.++++ ++|+++.+|+||.+||+|+++++|||||||||++|++++|||||++|+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~--~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~ 384 (481)
T PLN02992 307 ACSAYFSANGGETRDNTPEYLPEGFVSRTH--DRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPL 384 (481)
T ss_pred cccccccCcccccccchhhhCCHHHHHHhc--CCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCc
Confidence 00000 00001348999999998 999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCC--CCchHH
Q 042731 380 AAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNF--KGSSVK 457 (481)
Q Consensus 380 ~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~gs~~~ 457 (481)
..||+.||+++++.+|+|+.++. .+..++.+.|.++|+++|.++ +|+.++++|+++++.+++++ ++ |||+.+
T Consensus 385 ~~DQ~~na~~~~~~~g~gv~~~~-~~~~~~~~~l~~av~~vm~~~-~g~~~r~~a~~~~~~a~~Av----~~~~GGSS~~ 458 (481)
T PLN02992 385 FAEQNMNAALLSDELGIAVRSDD-PKEVISRSKIEALVRKVMVEE-EGEEMRRKVKKLRDTAEMSL----SIDGGGVAHE 458 (481)
T ss_pred cchhHHHHHHHHHHhCeeEEecC-CCCcccHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHh----cCCCCCchHH
Confidence 99999999999655699999975 113589999999999999987 78899999999999999997 73 999999
Q ss_pred HHHHHHHHHHhh
Q 042731 458 AMDQFLNAALIM 469 (481)
Q Consensus 458 ~~~~~~~~~~~~ 469 (481)
++++|++.+++-
T Consensus 459 ~l~~~v~~~~~~ 470 (481)
T PLN02992 459 SLCRVTKECQRF 470 (481)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 6
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.2e-61 Score=483.61 Aligned_cols=424 Identities=26% Similarity=0.380 Sum_probs=329.3
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQ 80 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (481)
|++||++|++.||+.|+. +||+|||++++.+...+.+.+....++++..++++ ..++++.+.+............+..
T Consensus 13 paqGHi~P~l~LAk~La~-~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p-~~dgLp~g~~~~~~l~~~l~~~~~~ 90 (442)
T PLN02208 13 FAFGHMIPFLHLANKLAE-KGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIP-PVNGLPAGAETTSDIPISMDNLLSE 90 (442)
T ss_pred ccccHHHHHHHHHHHHHh-CCCEEEEEeccchhhhhhcccCCCCceEEEEeCCC-CccCCCCCcccccchhHHHHHHHHH
Confidence 789999999999999999 99999999999888777654321035778777765 2356776644332222222233455
Q ss_pred HHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhhcCCCCCCCCCccc
Q 042731 81 ASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHRSTDSDEFL 160 (481)
Q Consensus 81 ~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 160 (481)
....+.+.++++++++ ++||||+| ++.|+..+|+++|||++.|++++++..+ +.+.. .... ...
T Consensus 91 ~~~~~~~~l~~~L~~~-------~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~----~~~~---~~~ 154 (442)
T PLN02208 91 ALDLTRDQVEAAVRAL-------RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVP----GGKL---GVP 154 (442)
T ss_pred HHHHHHHHHHHHHhhC-------CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccC----cccc---CCC
Confidence 5667778888888887 89999999 5789999999999999999999988654 33221 1000 112
Q ss_pred cCCCCCC-CccccCccChhhhcCCCCChHHHHHH-HHHHhhccCceEEEccchhhhhhHHHHHHhhcCCCeeeecccccC
Q 042731 161 LPDFPEA-STLHVTQISPYLRATDGSDSFSVFYK-KLLLLWKDADGILVNTVEELDKIGLMYFKRKFGRPVWPIGPVLLS 238 (481)
Q Consensus 161 ~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGpl~~~ 238 (481)
+|++|.. +.++..+++.+ .........+. +..+...+++++++|||.+||+.+++++...++++++.|||+...
T Consensus 155 ~pglp~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~ 230 (442)
T PLN02208 155 PPGYPSSKVLFRENDAHAL----ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPE 230 (442)
T ss_pred CCCCCCcccccCHHHcCcc----cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccC
Confidence 5677642 22445555532 11122222222 333456688999999999999999999988777899999999754
Q ss_pred ccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcC
Q 042731 239 TESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANK 318 (481)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~ 318 (481)
... ....+.++.+|||.++++++|||||||+...+.+++.+++.+++..+.+++|+++.+.+. +... +
T Consensus 231 ~~~-------~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~----~~~~-~ 298 (442)
T PLN02208 231 PDT-------SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGS----STVQ-E 298 (442)
T ss_pred cCC-------CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcc----cchh-h
Confidence 310 022467899999999889999999999998899999999999999999999999854210 0001 3
Q ss_pred CCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceE
Q 042731 319 WLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCV 398 (481)
Q Consensus 319 ~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~ 398 (481)
.+|++|.++++ +.|+++.+|+||.+||+|++|++|||||||||++|++++|||||++|+..||+.||+++++.+|+|+
T Consensus 299 ~lp~~f~~r~~--~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv 376 (442)
T PLN02208 299 GLPEGFEERVK--GRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSV 376 (442)
T ss_pred hCCHHHHHHHh--cCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeE
Confidence 48999999998 8999999999999999999999999999999999999999999999999999999999887679999
Q ss_pred EeeccCCcccCHHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHh
Q 042731 399 EIARGMSCEVLKEDLSAKIELVMNET-EKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFLNAALI 468 (481)
Q Consensus 399 ~~~~~~~~~~~~~~l~~~i~~vl~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 468 (481)
.+...+++.++.++|+++|+++|+++ ++|+.+|++|+++++.+. + +||+.+++++|++.+.+
T Consensus 377 ~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~-------~-~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 377 EVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV-------S-PGLLTGYVDKFVEELQE 439 (442)
T ss_pred EeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh-------c-CCcHHHHHHHHHHHHHH
Confidence 99762112489999999999999876 368899999999999983 3 67899999999999854
No 7
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=2e-61 Score=490.87 Aligned_cols=445 Identities=33% Similarity=0.620 Sum_probs=335.4
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCC------CCCeEEEEecCCCCCCCCCCCCCCCCCCC---
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQ------NSSIHLLEIPFNSVEHDLPPCTENTDSIP--- 71 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--- 71 (481)
|++||++|++.||+.|.. +|++|||++++.+..++++.+.. ...+.+..+++|...++++++.+.....+
T Consensus 14 pa~GHi~P~L~LAk~L~~-rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~~~~~~~~~ 92 (482)
T PLN03007 14 MAHGHMIPTLDMAKLFSS-RGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCENVDFITSNN 92 (482)
T ss_pred CccccHHHHHHHHHHHHh-CCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCccccccccccc
Confidence 799999999999999999 99999999999988777654320 01245666666633346776544332111
Q ss_pred C----CchHHHHHHHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhh
Q 042731 72 Y----HLFPKFLQASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLL 147 (481)
Q Consensus 72 ~----~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 147 (481)
. .....+......+.+.+.++++.. +|||||+|.+++|+..+|+++|||++.|++++++..+..++...
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~ 165 (482)
T PLN03007 93 NDDSGDLFLKFLFSTKYFKDQLEKLLETT-------RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYCIRV 165 (482)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHHHHh
Confidence 1 112233344455666666666655 89999999999999999999999999999999887766554433
Q ss_pred cCCCCCCC--CCccccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHhhc
Q 042731 148 NLPHRSTD--SDEFLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRKF 225 (481)
Q Consensus 148 ~~p~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 225 (481)
+.+..... .....+|++|..+.++..+++.. .....+..++.........++++++|++.+||+++.+.+++..
T Consensus 166 ~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~~ 241 (482)
T PLN03007 166 HKPQKKVASSSEPFVIPDLPGDIVITEEQINDA----DEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSFV 241 (482)
T ss_pred cccccccCCCCceeeCCCCCCccccCHHhcCCC----CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhcc
Confidence 33321111 11133677764333444444321 1112344555555566778889999999999999999988766
Q ss_pred CCCeeeecccccCcccc--c-cccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEE
Q 042731 226 GRPVWPIGPVLLSTESR--A-GARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVV 302 (481)
Q Consensus 226 ~~~~~~vGpl~~~~~~~--~-~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 302 (481)
..++++|||+....... . ....+.+..+.+|.+||++++++++|||||||+...+.+++.+++.+|+.++++|||++
T Consensus 242 ~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~ 321 (482)
T PLN03007 242 AKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVV 321 (482)
T ss_pred CCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 66899999976432110 0 00111122357799999999889999999999988888999999999999999999999
Q ss_pred cCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccccc
Q 042731 303 RPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAE 382 (481)
Q Consensus 303 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~D 382 (481)
+..... ++.. ..+|++|.+++. ++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+..|
T Consensus 322 ~~~~~~---~~~~--~~lp~~~~~r~~--~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~D 394 (482)
T PLN03007 322 RKNENQ---GEKE--EWLPEGFEERTK--GKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAE 394 (482)
T ss_pred ecCCcc---cchh--hcCCHHHHHHhc--cCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhh
Confidence 864200 0000 248899999988 899999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhcceEEeecc-----CCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHH
Q 042731 383 QFYNSKLLEEEMGVCVEIARG-----MSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVK 457 (481)
Q Consensus 383 Q~~na~~v~~~lG~G~~~~~~-----~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~ 457 (481)
|+.||+++++.+++|+.+..+ +...+++++|+++|+++|.++ +|++||+||+++++.+++++ .+|||+.+
T Consensus 395 Q~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~-~~~~~r~~a~~~~~~a~~a~----~~gGsS~~ 469 (482)
T PLN03007 395 QFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGE-EAEERRLRAKKLAEMAKAAV----EEGGSSFN 469 (482)
T ss_pred hhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHH----hCCCcHHH
Confidence 999999998766777766321 124689999999999999986 78899999999999999999 99999999
Q ss_pred HHHHHHHHHHhh
Q 042731 458 AMDQFLNAALIM 469 (481)
Q Consensus 458 ~~~~~~~~~~~~ 469 (481)
++++|++.+.+.
T Consensus 470 ~l~~~v~~~~~~ 481 (482)
T PLN03007 470 DLNKFMEELNSR 481 (482)
T ss_pred HHHHHHHHHHhc
Confidence 999999998753
No 8
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=5.1e-61 Score=479.68 Aligned_cols=426 Identities=27% Similarity=0.374 Sum_probs=327.4
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQ 80 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (481)
|++||++|++.||+.|.. +|++|||++++.+...+++......++.|..+++| ..++++++.+...+........+..
T Consensus 13 paqGHi~PmL~LAk~Las-~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP-~~dGLP~g~e~~~~l~~~~~~~~~~ 90 (446)
T PLN00414 13 FGFGHMIPYLHLANKLAE-KGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLP-PVDGLPFGAETASDLPNSTKKPIFD 90 (446)
T ss_pred cccchHHHHHHHHHHHHh-CCCEEEEEeCCchhhhhcccccCCCceEEEEecCC-CcCCCCCcccccccchhhHHHHHHH
Confidence 799999999999999999 99999999999887777653321135888777766 3467877654433333222234555
Q ss_pred HHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhhcCCCCCCCCCccc
Q 042731 81 ASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHRSTDSDEFL 160 (481)
Q Consensus 81 ~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 160 (481)
....+.+.+.++++.. +|||||+|. ++|+..+|+++|||++.|++++++..+.++++... . ...
T Consensus 91 a~~~l~~~l~~~L~~~-------~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~------~--~~~ 154 (446)
T PLN00414 91 AMDLLRDQIEAKVRAL-------KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAE------L--GFP 154 (446)
T ss_pred HHHHHHHHHHHHHhcC-------CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhh------c--CCC
Confidence 5566777777777665 899999995 78999999999999999999999888776652210 0 112
Q ss_pred cCCCCCC-CccccCcc--ChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHhhcCCCeeeeccccc
Q 042731 161 LPDFPEA-STLHVTQI--SPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRKFGRPVWPIGPVLL 237 (481)
Q Consensus 161 ~p~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGpl~~ 237 (481)
+|++|.. +.++..+. +.++. .....+.+.......++++++|||.+||+.++++++..++++++.|||+..
T Consensus 155 ~pg~p~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~ 228 (446)
T PLN00414 155 PPDYPLSKVALRGHDANVCSLFA------NSHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTGPMLP 228 (446)
T ss_pred CCCCCCCcCcCchhhcccchhhc------ccHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEcccCC
Confidence 4566541 11121111 11111 112344455566778999999999999999999998866678999999974
Q ss_pred CccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhc
Q 042731 238 STESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKAN 317 (481)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~ 317 (481)
..... .......+|.+|||++++++||||||||....+.+++.+++.+|+.++.+|+|++....+. ++..
T Consensus 229 ~~~~~-----~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~---~~~~-- 298 (446)
T PLN00414 229 EPQNK-----SGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGS---STVQ-- 298 (446)
T ss_pred Ccccc-----cCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCc---ccch--
Confidence 32100 0011245799999999999999999999999999999999999999999999999864210 0111
Q ss_pred CCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcce
Q 042731 318 KWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVC 397 (481)
Q Consensus 318 ~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G 397 (481)
+.+|++|.++++ +.++++.+|+||.+||+|+++++|||||||||++|++++|||||++|+..||+.||+++++.+|+|
T Consensus 299 ~~lp~~f~~r~~--~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g 376 (446)
T PLN00414 299 EALPEGFEERVK--GRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVS 376 (446)
T ss_pred hhCChhHHHHhc--CCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeE
Confidence 358999999998 899999999999999999999999999999999999999999999999999999999998767999
Q ss_pred EEeeccCCcccCHHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHhhh
Q 042731 398 VEIARGMSCEVLKEDLSAKIELVMNET-EKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFLNAALIMR 470 (481)
Q Consensus 398 ~~~~~~~~~~~~~~~l~~~i~~vl~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~ 470 (481)
+.+..++++.++.+.|+++|+++|.++ ++|+.+|++|+++++.+. ++|||+ ..+++|++++++..
T Consensus 377 ~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~-------~~gg~s-s~l~~~v~~~~~~~ 442 (446)
T PLN00414 377 VKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV-------SPGLLS-GYADKFVEALENEV 442 (446)
T ss_pred EEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH-------cCCCcH-HHHHHHHHHHHHhc
Confidence 999752123589999999999999875 368889999999999975 668844 33899999986543
No 9
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=6.8e-61 Score=477.18 Aligned_cols=423 Identities=26% Similarity=0.458 Sum_probs=330.7
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCC-CCCCCCCCCCchHHHH
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPC-TENTDSIPYHLFPKFL 79 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~ 79 (481)
|++||++|++.||+.|+. +|+.|||++++.+...+..... .++++..+| ++++++ .+... ....++
T Consensus 14 paqGHi~P~l~lAk~La~-~G~~vT~v~t~~~~~~~~~~~~--~~i~~~~ip-----dglp~~~~~~~~-----~~~~~~ 80 (449)
T PLN02173 14 PSQGHITPIRQFCKRLHS-KGFKTTHTLTTFIFNTIHLDPS--SPISIATIS-----DGYDQGGFSSAG-----SVPEYL 80 (449)
T ss_pred cccccHHHHHHHHHHHHc-CCCEEEEEECCchhhhcccCCC--CCEEEEEcC-----CCCCCccccccc-----CHHHHH
Confidence 799999999999999999 9999999999977665543222 468888887 366653 22211 123444
Q ss_pred HHH-hhhhHHHHHHHHHHhhccCCCCc-cEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhhcCCCCCCCCC
Q 042731 80 QAS-ASLEPHFKKLISELVNEQNGQKP-LCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHRSTDSD 157 (481)
Q Consensus 80 ~~~-~~~~~~~~~ll~~~~~~~~~~~p-D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 157 (481)
... ..+.+.+.++|++... .+ +| +|||+|.+++|+..+|+++|||++.|++++++....+++..... ...
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~--~~-~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~-----~~~ 152 (449)
T PLN02173 81 QNFKTFGSKTVADIIRKHQS--TD-NPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYINN-----GSL 152 (449)
T ss_pred HHHHHhhhHHHHHHHHHhhc--cC-CCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhcc-----CCc
Confidence 444 3567788888877532 12 45 99999999999999999999999999998888776555322110 111
Q ss_pred ccccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHhhcCCCeeeeccccc
Q 042731 158 EFLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRKFGRPVWPIGPVLL 237 (481)
Q Consensus 158 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGpl~~ 237 (481)
...+|++|. ++..+++.++..........+.+.+.......++++++|||.+||+.+++.++.. ++++.|||+..
T Consensus 153 ~~~~pg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~--~~v~~VGPl~~ 227 (449)
T PLN02173 153 TLPIKDLPL---LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV--CPVLTIGPTVP 227 (449)
T ss_pred cCCCCCCCC---CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc--CCeeEEcccCc
Confidence 234678776 7778888766433333334555555566778899999999999999999998653 47999999974
Q ss_pred Cc--ccc--ccccc--cCC--CChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCC
Q 042731 238 ST--ESR--AGARK--EYG--ISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFD 309 (481)
Q Consensus 238 ~~--~~~--~~~~~--~~~--~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 309 (481)
.. ... ..... ..+ ..+++|.+||+.++++++|||||||+...+.+++.+++.+| .+.+|+|+++...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~~--- 302 (449)
T PLN02173 228 SMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRASE--- 302 (449)
T ss_pred hhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEeccc---
Confidence 21 000 00000 001 22456999999999899999999999989999999999999 7888999997531
Q ss_pred CcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHH
Q 042731 310 INSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKL 389 (481)
Q Consensus 310 ~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~ 389 (481)
. ..+|+++.++++ ++|+++.+|+||.+||+|++|++|||||||||++|++++|||||++|++.||+.||++
T Consensus 303 ----~---~~lp~~~~~~~~--~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~ 373 (449)
T PLN02173 303 ----E---SKLPPGFLETVD--KDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKY 373 (449)
T ss_pred ----h---hcccchHHHhhc--CCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHH
Confidence 0 237888888886 7788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcceEEeeccC-CcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHh
Q 042731 390 LEEEMGVCVEIARGM-SCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFLNAALI 468 (481)
Q Consensus 390 v~~~lG~G~~~~~~~-~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 468 (481)
+++.||+|+.+..++ +..++.+.|.++|+++|.++ +|+.+|+||+++++..++++ .+|||+.+++++|++.+..
T Consensus 374 v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~-~~~~~r~~a~~~~~~a~~Av----~~gGSS~~~l~~~v~~~~~ 448 (449)
T PLN02173 374 IQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGE-KSKEMKENAGKWRDLAVKSL----SEGGSTDININTFVSKIQI 448 (449)
T ss_pred HHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHhcc
Confidence 998889999997521 23469999999999999886 78899999999999999999 9999999999999998753
No 10
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.4e-60 Score=477.21 Aligned_cols=427 Identities=28% Similarity=0.508 Sum_probs=324.1
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQ 80 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (481)
|++||++|++.||+.|.. +|+.|||++++.+..... ... .++++..+| +++|++.... . . ...+..
T Consensus 16 paqGHi~P~l~LAk~La~-~G~~VT~v~T~~n~~~~~-~~~--~~i~~~~ip-----~glp~~~~~~--~--~-~~~~~~ 81 (451)
T PLN02410 16 PAQGHISPMMQLAKTLHL-KGFSITIAQTKFNYFSPS-DDF--TDFQFVTIP-----ESLPESDFKN--L--G-PIEFLH 81 (451)
T ss_pred CccccHHHHHHHHHHHHc-CCCEEEEEeCcccccccc-cCC--CCeEEEeCC-----CCCCcccccc--c--C-HHHHHH
Confidence 799999999999999999 999999999987642111 111 468888776 3566531111 1 1 122333
Q ss_pred HH-hhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhhc------CCCCC
Q 042731 81 AS-ASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLN------LPHRS 153 (481)
Q Consensus 81 ~~-~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~------~p~~~ 153 (481)
.. ..+.+.+.++++++...... +++|||+|.+++|+..+|+++|||++.|++++++.++.+.++... .|...
T Consensus 82 ~~~~~~~~~~~~~L~~l~~~~~~-p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
T PLN02410 82 KLNKECQVSFKDCLGQLVLQQGN-EIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKE 160 (451)
T ss_pred HHHHHhHHHHHHHHHHHHhccCC-CcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCccc
Confidence 33 35566677777765321112 569999999999999999999999999999999888766654221 12111
Q ss_pred C-CCCccccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHhhcCCCeeee
Q 042731 154 T-DSDEFLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRKFGRPVWPI 232 (481)
Q Consensus 154 ~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v 232 (481)
. ......+|+++. ++..+++..... ....+...+... .....++++++|||++||+.++++++..++++++.|
T Consensus 161 ~~~~~~~~iPg~~~---~~~~dlp~~~~~--~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~v 234 (451)
T PLN02410 161 PKGQQNELVPEFHP---LRCKDFPVSHWA--SLESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQQQLQIPVYPI 234 (451)
T ss_pred cccCccccCCCCCC---CChHHCcchhcC--CcHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEEe
Confidence 1 111234677765 555566543321 112233333222 235678899999999999999999987766789999
Q ss_pred cccccCccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcc
Q 042731 233 GPVLLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDINS 312 (481)
Q Consensus 233 Gpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 312 (481)
||+....... .+.+....+|.+|||+++++++|||||||....+.+++.+++.+|+.++.+|||+++.+. .++
T Consensus 235 Gpl~~~~~~~----~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~---~~~ 307 (451)
T PLN02410 235 GPLHLVASAP----TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGS---VRG 307 (451)
T ss_pred cccccccCCC----ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCc---ccc
Confidence 9997542100 011223456899999999899999999999999999999999999999999999998531 000
Q ss_pred hhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHHHHH
Q 042731 313 EFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEE 392 (481)
Q Consensus 313 ~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~ 392 (481)
.... ..+|++|.++++ ++++++ +|+||.+||+|++|++|||||||||++||+++|||||++|+..||+.||+++++
T Consensus 308 ~~~~-~~lp~~f~er~~--~~g~v~-~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~ 383 (451)
T PLN02410 308 SEWI-ESLPKEFSKIIS--GRGYIV-KWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLEC 383 (451)
T ss_pred cchh-hcCChhHHHhcc--CCeEEE-ccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHH
Confidence 0000 238999999986 665555 999999999999999999999999999999999999999999999999999998
Q ss_pred HhcceEEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHh
Q 042731 393 EMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFLNAALI 468 (481)
Q Consensus 393 ~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 468 (481)
.||+|+.+.. .+++++|+++|+++|.++ +++.|+++|+++++.+++++ .+|||+.+++++|++.++.
T Consensus 384 ~~~~G~~~~~----~~~~~~v~~av~~lm~~~-~~~~~r~~a~~l~~~~~~a~----~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 384 VWKIGIQVEG----DLDRGAVERAVKRLMVEE-EGEEMRKRAISLKEQLRASV----ISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HhCeeEEeCC----cccHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHh
Confidence 8899999964 689999999999999887 58899999999999999999 9999999999999999864
No 11
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.5e-60 Score=478.62 Aligned_cols=440 Identities=25% Similarity=0.437 Sum_probs=332.9
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhh--cCC----CC---CCeEEEEecCCCCCCCCCCCCCCCCCCC
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKS--SLP----QN---SSIHLLEIPFNSVEHDLPPCTENTDSIP 71 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~--~~~----~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 71 (481)
|++||++|++.||+.|.. +|..|||++++.+..++.+ ... .. ..++|..+| ++++++.+..
T Consensus 16 paqGHi~Pml~lA~~La~-~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p-----dglp~~~~~~---- 85 (480)
T PLN02555 16 PGQGHVNPLLRLGKLLAS-KGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE-----DGWAEDDPRR---- 85 (480)
T ss_pred cccccHHHHHHHHHHHHh-CCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC-----CCCCCCcccc----
Confidence 799999999999999999 9999999999976666542 100 00 123443333 4666543321
Q ss_pred CCchHHHHHHH-hhhhHHHHHHHHHHhhccCCCCc-cEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhhc-
Q 042731 72 YHLFPKFLQAS-ASLEPHFKKLISELVNEQNGQKP-LCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLN- 148 (481)
Q Consensus 72 ~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~p-D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~- 148 (481)
..+..++..+ ..+.+.+.++|+++.. .+ +| +|||+|.++.|+..+|+++|||++.|+++++++++.+++....
T Consensus 86 -~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~-~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~~ 161 (480)
T PLN02555 86 -QDLDLYLPQLELVGKREIPNLVKRYAE--QG-RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHGL 161 (480)
T ss_pred -cCHHHHHHHHHHhhhHHHHHHHHHHhc--cC-CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhcC
Confidence 1123344444 3456777888876531 12 44 9999999999999999999999999999999988877765322
Q ss_pred CCCCCC--CCCccccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHhhcC
Q 042731 149 LPHRST--DSDEFLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRKFG 226 (481)
Q Consensus 149 ~p~~~~--~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 226 (481)
.+.... ......+|++|. ++..+++.++........+.+.+.+.......++++++|||.+||+.+++.++..+
T Consensus 162 ~~~~~~~~~~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~- 237 (480)
T PLN02555 162 VPFPTETEPEIDVQLPCMPL---LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLC- 237 (480)
T ss_pred CCcccccCCCceeecCCCCC---cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCC-
Confidence 121111 111244788876 77788887654222223444555555567778899999999999999999987643
Q ss_pred CCeeeecccccCccc-cccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCC
Q 042731 227 RPVWPIGPVLLSTES-RAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPP 305 (481)
Q Consensus 227 ~~~~~vGpl~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 305 (481)
+ ++.|||+...... ........+..+.+|.+||++++++++|||||||+...+.+++.+++.+++..+++|||+++..
T Consensus 238 ~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~ 316 (480)
T PLN02555 238 P-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPP 316 (480)
T ss_pred C-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 3 9999999754211 0100011123457899999999888999999999998899999999999999999999998743
Q ss_pred CCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhh
Q 042731 306 IGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFY 385 (481)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~ 385 (481)
.. .++... ..+|+++.++++ +. ..+.+|+||.+||.|++|++|||||||||++||+++|||||++|++.||+.
T Consensus 317 ~~---~~~~~~-~~lp~~~~~~~~--~~-g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~ 389 (480)
T PLN02555 317 HK---DSGVEP-HVLPEEFLEKAG--DK-GKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVT 389 (480)
T ss_pred cc---cccchh-hcCChhhhhhcC--Cc-eEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHH
Confidence 10 001111 247888887764 44 455699999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcceEEeeccC--CcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHH
Q 042731 386 NSKLLEEEMGVCVEIARGM--SCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFL 463 (481)
Q Consensus 386 na~~v~~~lG~G~~~~~~~--~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~ 463 (481)
||+++++.||+|+++..+. ...++.++|.++|+++|.++ +|+.+|+||++|++..++++ .+|||+.+++++|+
T Consensus 390 Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~-~g~~~r~ra~~l~~~a~~A~----~egGSS~~~l~~~v 464 (480)
T PLN02555 390 DAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGE-KAAELKQNALKWKEEAEAAV----AEGGSSDRNFQEFV 464 (480)
T ss_pred HHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHh----cCCCcHHHHHHHHH
Confidence 9999999999999995211 24689999999999999886 78899999999999999999 99999999999999
Q ss_pred HHHHhhhh
Q 042731 464 NAALIMRQ 471 (481)
Q Consensus 464 ~~~~~~~~ 471 (481)
+.+.+...
T Consensus 465 ~~i~~~~~ 472 (480)
T PLN02555 465 DKLVRKSV 472 (480)
T ss_pred HHHHhccc
Confidence 99987743
No 12
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=9.6e-60 Score=473.05 Aligned_cols=425 Identities=28% Similarity=0.478 Sum_probs=319.5
Q ss_pred CCCCChHHHHHHHHH--HHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHH
Q 042731 1 MAQGHIIPFLALARR--LEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKF 78 (481)
Q Consensus 1 p~~GHv~P~l~LA~~--L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 78 (481)
|++||++|++.||+. |.. +|++|||++++.+.+++++.+.....+++..++ ++++++.+ .....+
T Consensus 17 pa~GHi~P~l~La~~L~L~~-~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~-----~glp~~~~-------~~~~~~ 83 (456)
T PLN02210 17 AFQGHINPMLKLAKHLSLSS-KNLHFTLATTEQARDLLSTVEKPRRPVDLVFFS-----DGLPKDDP-------RAPETL 83 (456)
T ss_pred cccccHHHHHHHHHHHHhhc-CCcEEEEEeccchhhhhccccCCCCceEEEECC-----CCCCCCcc-------cCHHHH
Confidence 799999999999999 558 999999999998877765433111345555444 46665432 111233
Q ss_pred HHHH-hhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhh-cCCCCCC-C
Q 042731 79 LQAS-ASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLL-NLPHRST-D 155 (481)
Q Consensus 79 ~~~~-~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~-~~p~~~~-~ 155 (481)
+..+ ..+.+.+.+++++. +|||||+|.+++|+..+|+++|||++.|++.+++.+..+.+... ..+.... +
T Consensus 84 ~~~~~~~~~~~l~~~l~~~-------~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~~ 156 (456)
T PLN02210 84 LKSLNKVGAKNLSKIIEEK-------RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLED 156 (456)
T ss_pred HHHHHHhhhHHHHHHHhcC-------CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCcccc
Confidence 3333 34566677777766 89999999999999999999999999999999888776665422 1111111 1
Q ss_pred -CCccccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHhhcCCCeeeecc
Q 042731 156 -SDEFLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRKFGRPVWPIGP 234 (481)
Q Consensus 156 -~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp 234 (481)
.....+|+++. ++..+++.++..... ..+...+.+.......++++++|||.+||+.+++.+++ . +++++|||
T Consensus 157 ~~~~~~~Pgl~~---~~~~dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~-~~v~~VGP 230 (456)
T PLN02210 157 LNQTVELPALPL---LEVRDLPSFMLPSGG-AHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD-L-KPVIPIGP 230 (456)
T ss_pred cCCeeeCCCCCC---CChhhCChhhhcCCc-hHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-c-CCEEEEcc
Confidence 01134677765 666677665543211 12223333443455677899999999999999999876 3 68999999
Q ss_pred cccCc---cccc--cccc--cCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCC
Q 042731 235 VLLST---ESRA--GARK--EYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIG 307 (481)
Q Consensus 235 l~~~~---~~~~--~~~~--~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 307 (481)
+.... .... .... ..+..+.+|.+||++++++++|||||||....+.+++.+++.+|+.++++|||+++...
T Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~- 309 (456)
T PLN02210 231 LVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKE- 309 (456)
T ss_pred cCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCc-
Confidence 97421 0000 0000 01234567999999998899999999999888999999999999999999999997542
Q ss_pred CCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhH
Q 042731 308 FDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNS 387 (481)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na 387 (481)
. ...+.++.+.++ .+.+ ++.+|+||.+||+|+++++|||||||||++|++++|||||++|+..||+.||
T Consensus 310 -----~----~~~~~~~~~~~~-~~~g-~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na 378 (456)
T PLN02210 310 -----K----AQNVQVLQEMVK-EGQG-VVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDA 378 (456)
T ss_pred -----c----ccchhhHHhhcc-CCCe-EEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHH
Confidence 0 012344555542 0444 4569999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcceEEeeccC-CcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHH
Q 042731 388 KLLEEEMGVCVEIARGM-SCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFLNAA 466 (481)
Q Consensus 388 ~~v~~~lG~G~~~~~~~-~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 466 (481)
+++++.||+|+.+...+ ++.++.++|+++|+++|.++ +|+++|+||++|++..++++ ++|||+.+++++|++.+
T Consensus 379 ~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~-~g~~~r~~a~~l~~~a~~Av----~~gGSS~~~l~~~v~~~ 453 (456)
T PLN02210 379 RLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGP-AAADIRRRAAELKHVARLAL----APGGSSARNLDLFISDI 453 (456)
T ss_pred HHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHH
Confidence 99998569999997421 24689999999999999886 78899999999999999999 99999999999999998
Q ss_pred Hh
Q 042731 467 LI 468 (481)
Q Consensus 467 ~~ 468 (481)
..
T Consensus 454 ~~ 455 (456)
T PLN02210 454 TI 455 (456)
T ss_pred hc
Confidence 64
No 13
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=8.9e-60 Score=468.91 Aligned_cols=432 Identities=31% Similarity=0.516 Sum_probs=330.6
Q ss_pred CCCCChHHHHHHHHHHHhCC-CCEEEEEeCCcchhhhh--hcCCC---CCCeEEEEecCCCCCCCCC-CCCCCCCCCCCC
Q 042731 1 MAQGHIIPFLALARRLEETN-KYTITLVNTPLNLKKLK--SSLPQ---NSSIHLLEIPFNSVEHDLP-PCTENTDSIPYH 73 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~-Gh~Vt~~~~~~~~~~i~--~~~~~---~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~ 73 (481)
|++||++|++.||+.|+. + |..|||++++.....+. ..... ..++++..+|++. .++++ .+ .+
T Consensus 12 p~qGHi~P~l~LAk~La~-~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-~~~l~~~~--------~~ 81 (470)
T PLN03015 12 PGLGHLIPILELGNRLSS-VLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVD-VDNLVEPD--------AT 81 (470)
T ss_pred cccccHHHHHHHHHHHHh-CCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCc-cccCCCCC--------cc
Confidence 799999999999999998 6 99999998876543331 11100 0258899998652 23332 11 12
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCc-eEEEechhHHHHHHHHHhhhcC---
Q 042731 74 LFPKFLQASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIF-HAIFIGGGGFGFACLYSMLLNL--- 149 (481)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~~~~--- 149 (481)
....+......+.+.+.++|+++.. +|+|||+|.+++|+..+|+++||| .+.|++++++..+.+.+.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~~-----~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~ 156 (470)
T PLN03015 82 IFTKMVVKMRAMKPAVRDAVKSMKR-----KPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVV 156 (470)
T ss_pred HHHHHHHHHHhchHHHHHHHHhcCC-----CCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhccc
Confidence 2235556666777888888887631 579999999999999999999999 5777788777766655543211
Q ss_pred CCCCCC-CCccccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHhhc---
Q 042731 150 PHRSTD-SDEFLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRKF--- 225 (481)
Q Consensus 150 p~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--- 225 (481)
+..... .....+|++|. ++..+++..+.... ......+....+...+++++++|||++||+.+++.++..+
T Consensus 157 ~~~~~~~~~~~~vPg~p~---l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~ 231 (470)
T PLN03015 157 EGEYVDIKEPLKIPGCKP---VGPKELMETMLDRS--DQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELN 231 (470)
T ss_pred ccccCCCCCeeeCCCCCC---CChHHCCHhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccc
Confidence 110001 12245788876 77788886553321 2223333344456788999999999999999999997752
Q ss_pred ---CCCeeeecccccCccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEE
Q 042731 226 ---GRPVWPIGPVLLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVV 302 (481)
Q Consensus 226 ---~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 302 (481)
.++++.|||+.... . ....+.+|.+|||+++++++|||||||....+.+++.+++.+|+.++++|||++
T Consensus 232 ~~~~~~v~~VGPl~~~~-~-------~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~ 303 (470)
T PLN03015 232 RVMKVPVYPIGPIVRTN-V-------HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVL 303 (470)
T ss_pred cccCCceEEecCCCCCc-c-------cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 25699999997432 0 011245799999999989999999999999999999999999999999999999
Q ss_pred cCCCCCC--Cc-chhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEeccc
Q 042731 303 RPPIGFD--IN-SEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPL 379 (481)
Q Consensus 303 ~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~ 379 (481)
+.....+ .. +..+..+.+|++|.++++ +.++++.+|+||.++|+|++|++|||||||||++|++++|||||++|+
T Consensus 304 r~~~~~~~~~~~~~~~~~~~lp~~f~er~~--~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~ 381 (470)
T PLN03015 304 RRPASYLGASSSDDDQVSASLPEGFLDRTR--GVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPL 381 (470)
T ss_pred ecCccccccccccccchhhcCChHHHHhhc--cCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEeccc
Confidence 7532100 00 000011358999999998 889999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHhcceEEeec-cCCcccCHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHH
Q 042731 380 AAEQFYNSKLLEEEMGVCVEIAR-GMSCEVLKEDLSAKIELVMNE-TEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVK 457 (481)
Q Consensus 380 ~~DQ~~na~~v~~~lG~G~~~~~-~~~~~~~~~~l~~~i~~vl~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~ 457 (481)
+.||+.||+++++.||+|+++.. +....++.+.|+++|+++|.+ .++|+.+|+||++|++..++++ ++|||+.+
T Consensus 382 ~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av----~eGGSS~~ 457 (470)
T PLN03015 382 YAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAW----SHGGSSYN 457 (470)
T ss_pred ccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHh----cCCCcHHH
Confidence 99999999999778899999952 112468999999999999963 2478899999999999999999 99999999
Q ss_pred HHHHHHHHH
Q 042731 458 AMDQFLNAA 466 (481)
Q Consensus 458 ~~~~~~~~~ 466 (481)
++++|++.+
T Consensus 458 nl~~~~~~~ 466 (470)
T PLN03015 458 SLFEWAKRC 466 (470)
T ss_pred HHHHHHHhc
Confidence 999999876
No 14
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=3.1e-59 Score=472.26 Aligned_cols=436 Identities=28% Similarity=0.448 Sum_probs=331.4
Q ss_pred CCCCChHHHHHHHHHHHhCCC----CEEEEEeCCcchh----hhhhcC---CCC-CCeEEEEecCCCCCCCCCCCCCCCC
Q 042731 1 MAQGHIIPFLALARRLEETNK----YTITLVNTPLNLK----KLKSSL---PQN-SSIHLLEIPFNSVEHDLPPCTENTD 68 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~G----h~Vt~~~~~~~~~----~i~~~~---~~~-~~~~~~~~~~~~~~~~l~~~~~~~~ 68 (481)
|++||++|++.||+.|.. +| +.|||++++.... ++.+.. ... .++++..+|.+ .++++.+
T Consensus 12 paqGHi~P~l~LAk~La~-~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~----~~p~~~e--- 83 (480)
T PLN00164 12 WGSGHLMSMLEAGKRLLA-SSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAV----EPPTDAA--- 83 (480)
T ss_pred cchhHHHHHHHHHHHHHh-CCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCC----CCCCccc---
Confidence 789999999999999999 86 7999999875422 233211 000 25888888854 1222211
Q ss_pred CCCCCchHHHH-HHHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhh
Q 042731 69 SIPYHLFPKFL-QASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLL 147 (481)
Q Consensus 69 ~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 147 (481)
....++ .....+.+.++++++++. . +++|||+|.+++|+..+|+++|||++.|++++++.++.+.+.+.
T Consensus 84 -----~~~~~~~~~~~~~~~~l~~~L~~l~----~-pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~ 153 (480)
T PLN00164 84 -----GVEEFISRYIQLHAPHVRAAIAGLS----C-PVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPA 153 (480)
T ss_pred -----cHHHHHHHHHHhhhHHHHHHHHhcC----C-CceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhh
Confidence 112222 234456667777777651 1 35999999999999999999999999999999998887776543
Q ss_pred cCCCCC---CC-CCccccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHh
Q 042731 148 NLPHRS---TD-SDEFLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKR 223 (481)
Q Consensus 148 ~~p~~~---~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 223 (481)
...... .. .....+|+++. ++..+++.++.... +.....+....+....++++++|||++||+.++++++.
T Consensus 154 ~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 228 (480)
T PLN00164 154 LDEEVAVEFEEMEGAVDVPGLPP---VPASSLPAPVMDKK--SPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIAD 228 (480)
T ss_pred hcccccCcccccCcceecCCCCC---CChHHCCchhcCCC--cHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHh
Confidence 211100 00 11234777776 77777776554321 22233444445567788999999999999999999976
Q ss_pred hc------CCCeeeecccccCccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCc
Q 042731 224 KF------GRPVWPIGPVLLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKN 297 (481)
Q Consensus 224 ~~------~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~ 297 (481)
.. .++++.|||+...... ......+++|.+|||+++++++|||||||+...+.+++.+++.+|+.++++
T Consensus 229 ~~~~~~~~~~~v~~vGPl~~~~~~-----~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~ 303 (480)
T PLN00164 229 GRCTPGRPAPTVYPIGPVISLAFT-----PPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHR 303 (480)
T ss_pred ccccccCCCCceEEeCCCcccccc-----CCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCC
Confidence 42 1579999999743211 001234678999999999999999999999888999999999999999999
Q ss_pred eEEEEcCCCC--CCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEE
Q 042731 298 FIWVVRPPIG--FDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPII 375 (481)
Q Consensus 298 ~i~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l 375 (481)
|||+++.... .....+......+|+++.++++ ++++++.+|+||.+||+|+++++|||||||||++|++++|||||
T Consensus 304 flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l 381 (480)
T PLN00164 304 FLWVLRGPPAAGSRHPTDADLDELLPEGFLERTK--GRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMA 381 (480)
T ss_pred EEEEEcCCcccccccccccchhhhCChHHHHHhc--CCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEE
Confidence 9999985420 0000000000348899999998 89999999999999999999999999999999999999999999
Q ss_pred ecccccchhhhHHHHHHHhcceEEeeccC--CcccCHHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHhhcccCCC
Q 042731 376 GWPLAAEQFYNSKLLEEEMGVCVEIARGM--SCEVLKEDLSAKIELVMNETE-KGTDLRNKANEVKVIIKNAVRNETNFK 452 (481)
Q Consensus 376 ~~P~~~DQ~~na~~v~~~lG~G~~~~~~~--~~~~~~~~l~~~i~~vl~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~ 452 (481)
++|+.+||+.||+++++.+|+|+.+...+ +..++.++|.++|+++|.+++ +|+.+|++|+++++.+++++ .+|
T Consensus 382 ~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~----~~g 457 (480)
T PLN00164 382 PWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAV----EEG 457 (480)
T ss_pred eCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh----cCC
Confidence 99999999999998876779999996411 135799999999999998875 48899999999999999999 999
Q ss_pred CchHHHHHHHHHHHHhhh
Q 042731 453 GSSVKAMDQFLNAALIMR 470 (481)
Q Consensus 453 gs~~~~~~~~~~~~~~~~ 470 (481)
||+.+++++|++.+.+++
T Consensus 458 GSS~~~l~~~v~~~~~~~ 475 (480)
T PLN00164 458 GSSYAALQRLAREIRHGA 475 (480)
T ss_pred CcHHHHHHHHHHHHHhcc
Confidence 999999999999998765
No 15
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=5.7e-59 Score=467.03 Aligned_cols=419 Identities=23% Similarity=0.404 Sum_probs=320.1
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQ 80 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (481)
|++||++|++.||+.|.. +|++|||++++.+..++.+......+++++.+|. +++.+. + ..+..+..
T Consensus 15 PaqGHi~PmL~LAk~Las-~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~-----g~~~~~------~-~~~~~l~~ 81 (448)
T PLN02562 15 PAQGHVTPMLKLASAFLS-RGFEPVVITPEFIHRRISATLDPKLGITFMSISD-----GQDDDP------P-RDFFSIEN 81 (448)
T ss_pred ccccCHHHHHHHHHHHHh-CCCEEEEEeCcchhhhhhhccCCCCCEEEEECCC-----CCCCCc------c-ccHHHHHH
Confidence 799999999999999999 9999999999988776665321113688888773 332211 1 11234455
Q ss_pred HHh-hhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhhcCCCC--CCCC-
Q 042731 81 ASA-SLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHR--STDS- 156 (481)
Q Consensus 81 ~~~-~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~--~~~~- 156 (481)
.+. .+.+.+.++++++... + .++|||+|.+..|+..+|+++|||++.|++++++.++.+.+........ ...+
T Consensus 82 a~~~~~~~~l~~ll~~l~~~--~-pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 158 (448)
T PLN02562 82 SMENTMPPQLERLLHKLDED--G-EVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGC 158 (448)
T ss_pred HHHHhchHHHHHHHHHhcCC--C-CcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccccc
Confidence 554 5677888888876321 1 3489999999999999999999999999999888777665443211110 0000
Q ss_pred ----Cc-cccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHhh----cCC
Q 042731 157 ----DE-FLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRK----FGR 227 (481)
Q Consensus 157 ----~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~ 227 (481)
.. ..+|++|. ++..+++.++............+.+..+....++++++|||.+||+.+++.+... ..+
T Consensus 159 ~~~~~~~~~~Pg~~~---l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~ 235 (448)
T PLN02562 159 PRQLEKICVLPEQPL---LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNP 235 (448)
T ss_pred cccccccccCCCCCC---CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCC
Confidence 11 14677765 6777777665433222334555566666777889999999999999888876532 347
Q ss_pred CeeeecccccCccccccccccCCCChhhhhhhhcCCCCCeEEEEEccccc-ccCHHHHHHHHHHHHhcCCceEEEEcCCC
Q 042731 228 PVWPIGPVLLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQN-TIAASQMMQLAMALEASGKNFIWVVRPPI 306 (481)
Q Consensus 228 ~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 306 (481)
+++.|||+...... ..........+.+|.+||++++++++|||||||+. ..+.+++.+++.+++..+++|||+++...
T Consensus 236 ~v~~iGpl~~~~~~-~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~ 314 (448)
T PLN02562 236 QILQIGPLHNQEAT-TITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVW 314 (448)
T ss_pred CEEEecCccccccc-ccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCc
Confidence 89999999764311 00000011234678899999988899999999986 56889999999999999999999997541
Q ss_pred CCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhh
Q 042731 307 GFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYN 386 (481)
Q Consensus 307 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~n 386 (481)
. +.+|+++.++++ + ++.+.+|+||.+||+|++|++|||||||||++||+++|||||++|+.+||+.|
T Consensus 315 -------~---~~l~~~~~~~~~--~-~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n 381 (448)
T PLN02562 315 -------R---EGLPPGYVERVS--K-QGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVN 381 (448)
T ss_pred -------h---hhCCHHHHHHhc--c-CEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHH
Confidence 0 237888887764 4 45666999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHH
Q 042731 387 SKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFLNAA 466 (481)
Q Consensus 387 a~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 466 (481)
|+++++.+|+|+.+. .++.++|.++|+++|.|+ +||+||++++++++++ .+|||+.+++++|++.+
T Consensus 382 a~~~~~~~g~g~~~~-----~~~~~~l~~~v~~~l~~~----~~r~~a~~l~~~~~~~-----~~gGSS~~nl~~~v~~~ 447 (448)
T PLN02562 382 CAYIVDVWKIGVRIS-----GFGQKEVEEGLRKVMEDS----GMGERLMKLRERAMGE-----EARLRSMMNFTTLKDEL 447 (448)
T ss_pred HHHHHHHhCceeEeC-----CCCHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHh
Confidence 999987679998884 368999999999999988 8999999999998765 56799999999999986
No 16
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6e-59 Score=470.42 Aligned_cols=426 Identities=29% Similarity=0.445 Sum_probs=323.6
Q ss_pred CCCCChHHHHHHHHHHHhCC--CCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHH
Q 042731 1 MAQGHIIPFLALARRLEETN--KYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKF 78 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~--Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 78 (481)
|++||++|++.||+.|.. + ||+|||++++.+..++++.... .+++|+.+|. +++...+.. .....+
T Consensus 19 pa~GHi~P~l~LA~~L~~-~~~G~~VT~~~t~~~~~~i~~~~~~-~gi~fv~lp~-----~~p~~~~~~-----~~~~~~ 86 (459)
T PLN02448 19 PGRGHINPMMNLCKLLAS-RKPDILITFVVTEEWLGLIGSDPKP-DNIRFATIPN-----VIPSELVRA-----ADFPGF 86 (459)
T ss_pred cccccHHHHHHHHHHHHc-CCCCcEEEEEeCCchHhHhhccCCC-CCEEEEECCC-----CCCCccccc-----cCHHHH
Confidence 789999999999999999 9 9999999999988877763211 3789988873 333322111 112233
Q ss_pred HHH-HhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhhcC-----CCC
Q 042731 79 LQA-SASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLNL-----PHR 152 (481)
Q Consensus 79 ~~~-~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~-----p~~ 152 (481)
+.. ...+.+.+.+++++.. . ++||||+|.+++|+..+|+++|||++.++++++..++.+.+..... +..
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~----~-~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (459)
T PLN02448 87 LEAVMTKMEAPFEQLLDRLE----P-PVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVE 161 (459)
T ss_pred HHHHHHHhHHHHHHHHHhcC----C-CcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCc
Confidence 333 2356667777777652 1 6799999999999999999999999999999988777666543211 111
Q ss_pred CCC-CCc--cccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHhhcCCCe
Q 042731 153 STD-SDE--FLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRKFGRPV 229 (481)
Q Consensus 153 ~~~-~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 229 (481)
... ... ..+|+++. ++..+++.++... .....+.+.........++++++|||++||+.+++++...++.++
T Consensus 162 ~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~ 236 (459)
T PLN02448 162 LSESGEERVDYIPGLSS---TRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPV 236 (459)
T ss_pred cccccCCccccCCCCCC---CChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCce
Confidence 100 111 12566654 5666666654321 223344455555566678899999999999999999988777789
Q ss_pred eeecccccCcccc-ccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCC
Q 042731 230 WPIGPVLLSTESR-AGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGF 308 (481)
Q Consensus 230 ~~vGpl~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 308 (481)
+.|||+....... ..........+.++.+||+.++++++|||||||+...+.+++.+++.+|+..+++|||+++...
T Consensus 237 ~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~-- 314 (459)
T PLN02448 237 YPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEA-- 314 (459)
T ss_pred EEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCch--
Confidence 9999997532110 0000000112347999999998899999999999888899999999999999999999876431
Q ss_pred CCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHH
Q 042731 309 DINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSK 388 (481)
Q Consensus 309 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~ 388 (481)
.++.+.. +++.++.+|+||.+||+|+++++|||||||||++||+++|||||++|+..||+.||+
T Consensus 315 -------------~~~~~~~---~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~ 378 (459)
T PLN02448 315 -------------SRLKEIC---GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSK 378 (459)
T ss_pred -------------hhHhHhc---cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHH
Confidence 1232222 235666799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcceEEeecc--CCcccCHHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHH
Q 042731 389 LLEEEMGVCVEIARG--MSCEVLKEDLSAKIELVMNET-EKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFLNA 465 (481)
Q Consensus 389 ~v~~~lG~G~~~~~~--~~~~~~~~~l~~~i~~vl~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~ 465 (481)
++++.||+|+.+... ....+++++|+++|+++|.++ ++|++||+||+++++.+++++ .+|||+.+++++|++.
T Consensus 379 ~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~----~~gGss~~~l~~~v~~ 454 (459)
T PLN02448 379 LIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAI----AKGGSSDTNLDAFIRD 454 (459)
T ss_pred HHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh----cCCCcHHHHHHHHHHH
Confidence 999878999998641 123579999999999999874 578899999999999999999 9999999999999999
Q ss_pred HHhhh
Q 042731 466 ALIMR 470 (481)
Q Consensus 466 ~~~~~ 470 (481)
+++.+
T Consensus 455 ~~~~~ 459 (459)
T PLN02448 455 ISQGR 459 (459)
T ss_pred HhccC
Confidence 88653
No 17
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.4e-58 Score=461.32 Aligned_cols=435 Identities=25% Similarity=0.418 Sum_probs=321.2
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcc-hhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHH
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLN-LKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFL 79 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (481)
|++||++|++.||+.|..++|+.|||++++.+ ...+.+......+++|+.++ ++++.+.+.... .....+.
T Consensus 12 p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~-----dglp~g~~~~~~---~~~~~~~ 83 (455)
T PLN02152 12 PAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFS-----DGFDDGVISNTD---DVQNRLV 83 (455)
T ss_pred cccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcC-----CCCCCccccccc---cHHHHHH
Confidence 79999999999999999415999999999853 22222111100368888776 466654332111 1113444
Q ss_pred HHHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhhcCCCCCCCCCcc
Q 042731 80 QASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHRSTDSDEF 159 (481)
Q Consensus 80 ~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 159 (481)
.....+.+.+.++++++.. ++++++|||+|.+++|+..+|+++|||++.|++++++..+.+++..... ....
T Consensus 84 ~~~~~~~~~l~~~l~~l~~--~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~------~~~~ 155 (455)
T PLN02152 84 NFERNGDKALSDFIEANLN--GDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN------NSVF 155 (455)
T ss_pred HHHHhccHHHHHHHHHhhc--cCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC------CCee
Confidence 4445666778888877632 1213599999999999999999999999999999999888776543211 1123
Q ss_pred ccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhc--cCceEEEccchhhhhhHHHHHHhhcCCCeeeeccccc
Q 042731 160 LLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWK--DADGILVNTVEELDKIGLMYFKRKFGRPVWPIGPVLL 237 (481)
Q Consensus 160 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGpl~~ 237 (481)
.+|++|. ++..+++.++........+...+.+..+... .++++++|||++||+.+++++.. .+++.|||+..
T Consensus 156 ~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---~~v~~VGPL~~ 229 (455)
T PLN02152 156 EFPNLPS---LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---IEMVAVGPLLP 229 (455)
T ss_pred ecCCCCC---CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---CCEEEEcccCc
Confidence 4777776 7777888766432222333444444444433 24689999999999999999864 36999999974
Q ss_pred Cccccccc-cc--cCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCC--cc
Q 042731 238 STESRAGA-RK--EYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDI--NS 312 (481)
Q Consensus 238 ~~~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~--~~ 312 (481)
....+... .. ..+..+.++.+|||+++++++|||||||+...+.+++.+++.+|+.++++|||+++.....+. ++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~ 309 (455)
T PLN02152 230 AEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEG 309 (455)
T ss_pred cccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCccccccccc
Confidence 32100000 00 001234579999999988899999999999999999999999999999999999986321000 00
Q ss_pred hhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHHHHH
Q 042731 313 EFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEE 392 (481)
Q Consensus 313 ~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~ 392 (481)
+....-.+|++|.++++ +.+ .+.+|+||.+||+|++|++|||||||||++|++++|||+|++|+..||+.||+++++
T Consensus 310 ~~~~~~~~~~~f~e~~~--~~g-~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~ 386 (455)
T PLN02152 310 EEETEIEKIAGFRHELE--EVG-MIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEE 386 (455)
T ss_pred ccccccccchhHHHhcc--CCe-EEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHH
Confidence 00000014678888775 554 555999999999999999999999999999999999999999999999999999998
Q ss_pred HhcceEEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHH
Q 042731 393 EMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFLNAA 466 (481)
Q Consensus 393 ~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 466 (481)
.||+|+.+..++...++.++|+++|+++|+++ ++.||+||++|++.+++++ .+|||+.+++++|++++
T Consensus 387 ~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~--~~~~r~~a~~~~~~~~~a~----~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 387 IWKTGVRVRENSEGLVERGEIRRCLEAVMEEK--SVELRESAEKWKRLAIEAG----GEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HhCceEEeecCcCCcCcHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHh
Confidence 77888887542234579999999999999855 5579999999999999999 99999999999999975
No 18
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=6.2e-59 Score=463.41 Aligned_cols=425 Identities=24% Similarity=0.475 Sum_probs=317.9
Q ss_pred CCCCChHHHHHHHHHHHhCCC--CEEEE--EeCCcchhhhh----hcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCC
Q 042731 1 MAQGHIIPFLALARRLEETNK--YTITL--VNTPLNLKKLK----SSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPY 72 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~G--h~Vt~--~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 72 (481)
|++||++|++.||+.|.. +| +.||+ ++++.+...+. ......++++|+.+|++ ...+.... .. .
T Consensus 12 p~qGHi~P~l~LA~~La~-~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~---~~~~~~~~--~~--~ 83 (451)
T PLN03004 12 PPIGHLVSMVELGKTILS-KNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAV---TPYSSSST--SR--H 83 (451)
T ss_pred cccchHHHHHHHHHHHHh-CCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCC---CCCCCccc--cc--c
Confidence 799999999999999999 88 44554 55554332222 11100046899988854 11111111 11 1
Q ss_pred CchHHHHHHHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhhc---C
Q 042731 73 HLFPKFLQASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLN---L 149 (481)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~---~ 149 (481)
.....+........+.+.++++++.. +++++|||+|.+++|+..+|+++|||++.|++++++.++.+.+.+.. .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~l~~---~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~ 160 (451)
T PLN03004 84 HHESLLLEILCFSNPSVHRTLFSLSR---NFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETT 160 (451)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHhcCC---CCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccccc
Confidence 11134444445666777788877622 11349999999999999999999999999999999988877765321 1
Q ss_pred CCCCCC-CCccccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHhhcC-C
Q 042731 150 PHRSTD-SDEFLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRKFG-R 227 (481)
Q Consensus 150 p~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~ 227 (481)
+..... .....+|++|. ++..+++.++... .+.....+.+.......++++++|||++||+.+++.++..+. +
T Consensus 161 ~~~~~~~~~~v~iPg~p~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~ 235 (451)
T PLN03004 161 PGKNLKDIPTVHIPGVPP---MKGSDMPKAVLER--DDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELCFR 235 (451)
T ss_pred cccccccCCeecCCCCCC---CChHHCchhhcCC--chHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCCC
Confidence 111101 11245778876 7777888766432 123345555556667788899999999999999999977543 6
Q ss_pred CeeeecccccCccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCC
Q 042731 228 PVWPIGPVLLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIG 307 (481)
Q Consensus 228 ~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 307 (481)
+++.|||+........ .. ...+.+|.+|||+++++++|||||||+...+.+++.+++.+|+.++++|||+++....
T Consensus 236 ~v~~vGPl~~~~~~~~--~~--~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~ 311 (451)
T PLN03004 236 NIYPIGPLIVNGRIED--RN--DNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPE 311 (451)
T ss_pred CEEEEeeeccCccccc--cc--cchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcc
Confidence 8999999974321000 00 1123569999999998999999999999899999999999999999999999985410
Q ss_pred CCCc-chhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhh
Q 042731 308 FDIN-SEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYN 386 (481)
Q Consensus 308 ~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~n 386 (481)
.+.+ .+.. +.+|++|.++++ +.|+++.+|+||.+||+|+++++|||||||||++|++++|||||++|+..||+.|
T Consensus 312 ~~~~~~~~~--~~lp~gf~er~~--~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~n 387 (451)
T PLN03004 312 LEKTELDLK--SLLPEGFLSRTE--DKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFN 387 (451)
T ss_pred ccccccchh--hhCChHHHHhcc--CCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhh
Confidence 0000 0111 248899999998 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHH
Q 042731 387 SKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVK 457 (481)
Q Consensus 387 a~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~ 457 (481)
|+++++.+|+|+.++.++...++.++|+++|+++|+|+ +|+++|+++++..+.++ ++|||+.+
T Consensus 388 a~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~----~~r~~a~~~~~~a~~Av----~~GGSS~~ 450 (451)
T PLN03004 388 RVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGEC----PVRERTMAMKNAAELAL----TETGSSHT 450 (451)
T ss_pred HHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHh----cCCCCCCC
Confidence 99998777999999752123679999999999999987 89999999999999999 99998754
No 19
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=5.7e-58 Score=457.89 Aligned_cols=434 Identities=26% Similarity=0.462 Sum_probs=318.9
Q ss_pred CCCCChHHHHHHHHHHHhCCC--CEEEEEeCCcch-hh----hhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 042731 1 MAQGHIIPFLALARRLEETNK--YTITLVNTPLNL-KK----LKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYH 73 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~G--h~Vt~~~~~~~~-~~----i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 73 (481)
|++||++|++.||+.|.. +| ..|||++++.+. .. +.+.....++++|..+|.. +..+.. ... .+
T Consensus 12 p~qGHi~P~l~lA~~La~-~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~---~~~~~~-~~~----~~ 82 (468)
T PLN02207 12 PTVGHLVPFLEFARRLIE-QDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPEL---EEKPTL-GGT----QS 82 (468)
T ss_pred cchhhHHHHHHHHHHHHh-CCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCC---CCCCcc-ccc----cC
Confidence 789999999999999999 88 999999998654 22 2211100046899998832 111110 111 11
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHhhc--cCCCCc-cEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhhcC-
Q 042731 74 LFPKFLQASASLEPHFKKLISELVNE--QNGQKP-LCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLNL- 149 (481)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~p-D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~- 149 (481)
....+........+.+.+.++++... ..+ +| +|||+|.+++|+..+|+++|||++.|++++++..+.+.+.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~~ 161 (468)
T PLN02207 83 VEAYVYDVIEKNIPLVRNIVMDILSSLALDG-VKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRHS 161 (468)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhccCC-CCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhccc
Confidence 11344444444433333333333221 112 34 89999999999999999999999999999988877666543211
Q ss_pred CCCCC----CCCccccCCC-CCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHh-
Q 042731 150 PHRST----DSDEFLLPDF-PEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKR- 223 (481)
Q Consensus 150 p~~~~----~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 223 (481)
+.... ......+|++ +. ++..+++.++... .. ...+.+......+++++++||+++||+++++.++.
T Consensus 162 ~~~~~~~~~~~~~~~vPgl~~~---l~~~dlp~~~~~~---~~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~ 234 (468)
T PLN02207 162 KDTSVFVRNSEEMLSIPGFVNP---VPANVLPSALFVE---DG-YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDE 234 (468)
T ss_pred cccccCcCCCCCeEECCCCCCC---CChHHCcchhcCC---cc-HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhc
Confidence 11000 0111346777 44 7777777665321 12 33344444567788999999999999999999865
Q ss_pred hcCCCeeeecccccCccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEc
Q 042731 224 KFGRPVWPIGPVLLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVR 303 (481)
Q Consensus 224 ~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 303 (481)
...++++.|||+........ .......+.++.+|||+++++++|||||||....+.+++.+++.+|+.++++|||+++
T Consensus 235 ~~~p~v~~VGPl~~~~~~~~--~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r 312 (468)
T PLN02207 235 QNYPSVYAVGPIFDLKAQPH--PEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLR 312 (468)
T ss_pred cCCCcEEEecCCcccccCCC--CccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEe
Confidence 23478999999975431000 0000112367999999998899999999999999999999999999999999999998
Q ss_pred CCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccccch
Q 042731 304 PPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQ 383 (481)
Q Consensus 304 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ 383 (481)
... ....+.+|++|.++++ +++ .+.+|+||.+||+|+++++|||||||||++||+++|||||++|+.+||
T Consensus 313 ~~~-------~~~~~~lp~~f~er~~--~~g-~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ 382 (468)
T PLN02207 313 TEE-------VTNDDLLPEGFLDRVS--GRG-MICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQ 382 (468)
T ss_pred CCC-------ccccccCCHHHHhhcC--CCe-EEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccc
Confidence 531 0000348899988876 555 455999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhcceEEeecc----CCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHH
Q 042731 384 FYNSKLLEEEMGVCVEIARG----MSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAM 459 (481)
Q Consensus 384 ~~na~~v~~~lG~G~~~~~~----~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~ 459 (481)
+.||+++++.+|+|+.+..+ ....++.++|.++|+++|.+ ++++||+||+++++.+++++ .+|||+.+++
T Consensus 383 ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~--~~~~~r~~a~~l~~~a~~A~----~~GGSS~~~l 456 (468)
T PLN02207 383 QLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK--DNNVVRKRVMDISQMIQRAT----KNGGSSFAAI 456 (468)
T ss_pred hhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHh----cCCCcHHHHH
Confidence 99999988867999988421 11356999999999999973 35689999999999999999 9999999999
Q ss_pred HHHHHHHHhh
Q 042731 460 DQFLNAALIM 469 (481)
Q Consensus 460 ~~~~~~~~~~ 469 (481)
++|++.++.-
T Consensus 457 ~~~v~~~~~~ 466 (468)
T PLN02207 457 EKFIHDVIGI 466 (468)
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.5e-57 Score=458.38 Aligned_cols=433 Identities=28% Similarity=0.465 Sum_probs=317.5
Q ss_pred CCCCChHHHHHHHHHHHhCCC--CEEEEEeCCcchhhh-------hhcCCC-CCCeEEEEecCCCCCCCCCCCCCCCCCC
Q 042731 1 MAQGHIIPFLALARRLEETNK--YTITLVNTPLNLKKL-------KSSLPQ-NSSIHLLEIPFNSVEHDLPPCTENTDSI 70 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~G--h~Vt~~~~~~~~~~i-------~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 70 (481)
|++||++|++.||+.|.. +| ..|||++++.+...+ .+.... ..+++++.+|++. ++. . ..
T Consensus 11 paqGHi~P~l~LAk~La~-~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-----~~~-~---~~ 80 (481)
T PLN02554 11 PGIGHLRPTVELAKLLVD-SDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGD-----QPT-T---ED 80 (481)
T ss_pred cchhhHHHHHHHHHHHHh-CCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCC-----CCc-c---cc
Confidence 799999999999999999 88 889999998664321 111000 1468999888541 111 0 01
Q ss_pred CCCchHHHHHHHhhhhHHHHHHHHHHhhc---cCCCCc-cEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhh
Q 042731 71 PYHLFPKFLQASASLEPHFKKLISELVNE---QNGQKP-LCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSML 146 (481)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~p-D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 146 (481)
..+...+..+.+.+.+.++++... .++ +| +|||+|.++.|+..+|+++|||++.|++++++.++.+.+.+
T Consensus 81 -----~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~ 154 (481)
T PLN02554 81 -----PTFQSYIDNQKPKVRDAVAKLVDDSSTPSS-PRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQ 154 (481)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHhhhccCCC-CCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhh
Confidence 122233334445555555554321 122 34 89999999999999999999999999999999988877664
Q ss_pred hcCCC--C---CC-CC-CccccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHH
Q 042731 147 LNLPH--R---ST-DS-DEFLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLM 219 (481)
Q Consensus 147 ~~~p~--~---~~-~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (481)
..... . .. +. ....+|+++. .++..+++..+.. ..+...+.+....+.+++++++|++.+||+.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~v~iPgl~~--pl~~~dlp~~~~~----~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~ 228 (481)
T PLN02554 155 MLYDEKKYDVSELEDSEVELDVPSLTR--PYPVKCLPSVLLS----KEWLPLFLAQARRFREMKGILVNTVAELEPQALK 228 (481)
T ss_pred hhccccccCccccCCCCceeECCCCCC--CCCHHHCCCcccC----HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHH
Confidence 32111 0 00 11 1134677631 1555566654421 1334455556667788999999999999999998
Q ss_pred HHHhh--cCCCeeeecccccCccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCc
Q 042731 220 YFKRK--FGRPVWPIGPVLLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKN 297 (481)
Q Consensus 220 ~~~~~--~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~ 297 (481)
.+.+. ..++++.|||+........ ......+.++.+||++++++++|||||||+...+.+++.+++.+++.++++
T Consensus 229 ~l~~~~~~~~~v~~vGpl~~~~~~~~---~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~ 305 (481)
T PLN02554 229 FFSGSSGDLPPVYPVGPVLHLENSGD---DSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHR 305 (481)
T ss_pred HHHhcccCCCCEEEeCCCcccccccc---ccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCC
Confidence 88763 3368999999953221100 000124568999999998889999999999888899999999999999999
Q ss_pred eEEEEcCCCCC---CCcchh-hhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCc
Q 042731 298 FIWVVRPPIGF---DINSEF-KANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVP 373 (481)
Q Consensus 298 ~i~~~~~~~~~---~~~~~~-~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP 373 (481)
|||+++....- +..++. +..+.+|++|.++++ ++++ +.+|+||.+||.|++|++|||||||||++|++++|||
T Consensus 306 flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~--~~g~-v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP 382 (481)
T PLN02554 306 FLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTK--DIGK-VIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVP 382 (481)
T ss_pred eEEEEcCCcccccccccccccchhhhCChHHHHHhc--cCce-EEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCC
Confidence 99999753100 000000 000236889988876 5554 4599999999999999999999999999999999999
Q ss_pred EEecccccchhhhHHHHHHHhcceEEeecc--------CCcccCHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHH
Q 042731 374 IIGWPLAAEQFYNSKLLEEEMGVCVEIARG--------MSCEVLKEDLSAKIELVMN-ETEKGTDLRNKANEVKVIIKNA 444 (481)
Q Consensus 374 ~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~--------~~~~~~~~~l~~~i~~vl~-~~~~~~~~~~~a~~~~~~~~~~ 444 (481)
||++|+.+||+.||+++.+.+|+|+.+... ....+++++|.++|+++|. |+ +||+||+++++.++++
T Consensus 383 ~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~----~~r~~a~~l~~~~~~a 458 (481)
T PLN02554 383 MAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDS----DVRKRVKEMSEKCHVA 458 (481)
T ss_pred EEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHH
Confidence 999999999999996644455999998631 1246899999999999997 55 8999999999999999
Q ss_pred hhcccCCCCchHHHHHHHHHHHHhh
Q 042731 445 VRNETNFKGSSVKAMDQFLNAALIM 469 (481)
Q Consensus 445 ~~~~~~~~gs~~~~~~~~~~~~~~~ 469 (481)
+ ++|||+.+++++|++.+.++
T Consensus 459 v----~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 459 L----MDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred h----cCCChHHHHHHHHHHHHHhh
Confidence 9 99999999999999999875
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=7.3e-56 Score=448.84 Aligned_cols=439 Identities=29% Similarity=0.481 Sum_probs=316.5
Q ss_pred CCCCChHHHHHHHHHHHhCCCC---EEEEEeCCcch-----hhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCC
Q 042731 1 MAQGHIIPFLALARRLEETNKY---TITLVNTPLNL-----KKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPY 72 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh---~Vt~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 72 (481)
|++||++|++.||+.|.. +|. .||++++.... ..+.+.....++++|+.+|++. . ++..+....
T Consensus 12 paqGHi~P~l~LAk~La~-~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~-p~~~~~~~~--- 83 (475)
T PLN02167 12 PSTGHILVTIEFAKRLIN-LDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQ---D-PPPMELFVK--- 83 (475)
T ss_pred hhhhhHHHHHHHHHHHHh-CCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCC---C-Ccccccccc---
Confidence 789999999999999999 883 56777654221 1122211100469999988642 1 211110010
Q ss_pred CchHHHHHHHhhhhHHHHHHHHHHhhc--cCCC-CccEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhh-c
Q 042731 73 HLFPKFLQASASLEPHFKKLISELVNE--QNGQ-KPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLL-N 148 (481)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~-~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~-~ 148 (481)
.....+......+.+.+.++++++... ..++ +++|||+|.+++|+..+|+++|||++.|++++++.++.+++.+. .
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~~~ 163 (475)
T PLN02167 84 ASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPERH 163 (475)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHHhc
Confidence 011244444455666677777665321 1121 24999999999999999999999999999999988877665432 1
Q ss_pred --CCCC-CC-C-CCccccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHh
Q 042731 149 --LPHR-ST-D-SDEFLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKR 223 (481)
Q Consensus 149 --~p~~-~~-~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 223 (481)
.+.. .. . .....+|+++.. ++..+++..+... . ....+....+....++++++|||++||+.++++++.
T Consensus 164 ~~~~~~~~~~~~~~~~~iPgl~~~--l~~~dlp~~~~~~---~-~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~ 237 (475)
T PLN02167 164 RKTASEFDLSSGEEELPIPGFVNS--VPTKVLPPGLFMK---E-SYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFSR 237 (475)
T ss_pred cccccccccCCCCCeeECCCCCCC--CChhhCchhhhCc---c-hHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHHh
Confidence 1100 00 0 112346777321 5555666544321 1 123344445567788999999999999999999866
Q ss_pred hc--CCCeeeecccccCccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEE
Q 042731 224 KF--GRPVWPIGPVLLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWV 301 (481)
Q Consensus 224 ~~--~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 301 (481)
.. .++++.|||+........ . ........++.+||+.++++++|||||||+...+.+++.+++.+|+.++++|||+
T Consensus 238 ~~~~~p~v~~vGpl~~~~~~~~-~-~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~ 315 (475)
T PLN02167 238 LPENYPPVYPVGPILSLKDRTS-P-NLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWS 315 (475)
T ss_pred hcccCCeeEEeccccccccccC-C-CCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEE
Confidence 41 267999999976431100 0 0001123679999999988999999999998889999999999999999999999
Q ss_pred EcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEeccccc
Q 042731 302 VRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAA 381 (481)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~ 381 (481)
++.... ...... ..+|++|.++++ +.++++ +|+||.+||+|++|++|||||||||++||+++|||||++|+..
T Consensus 316 ~~~~~~-~~~~~~---~~lp~~~~er~~--~rg~v~-~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~ 388 (475)
T PLN02167 316 IRTNPA-EYASPY---EPLPEGFMDRVM--GRGLVC-GWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYA 388 (475)
T ss_pred EecCcc-cccchh---hhCChHHHHHhc--cCeeee-ccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccc
Confidence 975420 000001 248899999987 666555 9999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHhcceEEeecc----CCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHH
Q 042731 382 EQFYNSKLLEEEMGVCVEIARG----MSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVK 457 (481)
Q Consensus 382 DQ~~na~~v~~~lG~G~~~~~~----~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~ 457 (481)
||+.||+++.+.+|+|+.+... +...++++.|+++|+++|.++ +.||+||+++++.+++++ .+|||+.+
T Consensus 389 DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~---~~~r~~a~~~~~~~~~av----~~gGsS~~ 461 (475)
T PLN02167 389 EQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE---DVPRKKVKEIAEAARKAV----MDGGSSFV 461 (475)
T ss_pred cchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHH----hCCCcHHH
Confidence 9999998755566999998641 013579999999999999764 279999999999999999 99999999
Q ss_pred HHHHHHHHHHhh
Q 042731 458 AMDQFLNAALIM 469 (481)
Q Consensus 458 ~~~~~~~~~~~~ 469 (481)
++++|++.+++.
T Consensus 462 ~l~~~v~~i~~~ 473 (475)
T PLN02167 462 AVKRFIDDLLGD 473 (475)
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.2e-44 Score=368.46 Aligned_cols=402 Identities=19% Similarity=0.241 Sum_probs=265.2
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCC-----CCCch
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSI-----PYHLF 75 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~ 75 (481)
++.+|..-+-+|+++|++ |||+||++++.... ....... .+++.+.++.. .+.+.......... .....
T Consensus 30 ~~~SH~~~~~~l~~~La~-rGH~VTvi~p~~~~-~~~~~~~--~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 103 (507)
T PHA03392 30 PAYSHHSVFKVYVEALAE-RGHNVTVIKPTLRV-YYASHLC--GNITEIDASLS--VEYFKKLVKSSAVFRKRGVVADSS 103 (507)
T ss_pred CCCcHHHHHHHHHHHHHH-cCCeEEEEeccccc-ccccCCC--CCEEEEEcCCC--hHHHHHHHhhhhHHHhhhhhhhHH
Confidence 478999999999999999 99999999875311 1111011 55665555421 11111000000000 00000
Q ss_pred ---HHHHHH----Hhh--hhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHh-CCceEEEechhHHHH-HH---
Q 042731 76 ---PKFLQA----SAS--LEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEY-GIFHAIFIGGGGFGF-AC--- 141 (481)
Q Consensus 76 ---~~~~~~----~~~--~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~l-giP~v~~~~~~~~~~-~~--- 141 (481)
...... ++. ..+.+.++|+. .++ ++|+||+|.+..|+..+|+.+ ++|.|.+++...... ..
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~L~~-~~~----kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~~~~g 178 (507)
T PHA03392 104 TVTADNYMGLVRMISDQFDLPNVKNLIAN-KNN----KFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFETMG 178 (507)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHhc-CCC----ceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHHHhhc
Confidence 001111 111 12333445541 011 799999999888999999999 999888776543322 11
Q ss_pred -HHHhhhcCCCCCCCCCccccCCCCCCCcc--ccCccChhhh----cCCCCChHHHHHHHH--------HHhhccCceEE
Q 042731 142 -LYSMLLNLPHRSTDSDEFLLPDFPEASTL--HVTQISPYLR----ATDGSDSFSVFYKKL--------LLLWKDADGIL 206 (481)
Q Consensus 142 -~~~~~~~~p~~~~~~~~~~~p~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 206 (481)
.+.++.|.|..... ....+.+ |...+..... .........+.+.+. .+.....+.++
T Consensus 179 g~p~~~syvP~~~~~--------~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~l 250 (507)
T PHA03392 179 AVSRHPVYYPNLWRS--------KFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLF 250 (507)
T ss_pred cCCCCCeeeCCcccC--------CCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEE
Confidence 12222333321111 1111111 1111110000 000001111122221 22334556789
Q ss_pred EccchhhhhhHHHHHHhhcCCCeeeecccccCccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccc---cCHHH
Q 042731 207 VNTVEELDKIGLMYFKRKFGRPVWPIGPVLLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNT---IAASQ 283 (481)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~---~~~~~ 283 (481)
+|+.+.++.+ +++++++.+|||+...... ..++++++.+|++.++ +++|||||||+.. .+.++
T Consensus 251 vns~~~~d~~------rp~~p~v~~vGgi~~~~~~-------~~~l~~~l~~fl~~~~-~g~V~vS~GS~~~~~~~~~~~ 316 (507)
T PHA03392 251 VNVHPVFDNN------RPVPPSVQYLGGLHLHKKP-------PQPLDDYLEEFLNNST-NGVVYVSFGSSIDTNDMDNEF 316 (507)
T ss_pred EecCccccCC------CCCCCCeeeecccccCCCC-------CCCCCHHHHHHHhcCC-CcEEEEECCCCCcCCCCCHHH
Confidence 9999988876 5788999999999764301 1356889999999874 5799999999863 46788
Q ss_pred HHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchh
Q 042731 284 MMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNS 363 (481)
Q Consensus 284 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt 363 (481)
+..++++++..+.+|||+++... .+.+. ++|+.+.+|+||.+||+|+.+++||||||+||
T Consensus 317 ~~~~l~a~~~l~~~viw~~~~~~-------------~~~~~-------p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s 376 (507)
T PHA03392 317 LQMLLRTFKKLPYNVLWKYDGEV-------------EAINL-------PANVLTQKWFPQRAVLKHKNVKAFVTQGGVQS 376 (507)
T ss_pred HHHHHHHHHhCCCeEEEEECCCc-------------CcccC-------CCceEEecCCCHHHHhcCCCCCEEEecCCccc
Confidence 99999999999999999987542 11111 67999999999999999999999999999999
Q ss_pred HHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH
Q 042731 364 VLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKN 443 (481)
Q Consensus 364 ~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~ 443 (481)
++||+++|||+|++|+..||+.||++++++ |+|+.+++ ..+++++|.++|+++++|+ +|++||+++++.+++
T Consensus 377 ~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~-G~G~~l~~---~~~t~~~l~~ai~~vl~~~----~y~~~a~~ls~~~~~ 448 (507)
T PHA03392 377 TDEAIDALVPMVGLPMMGDQFYNTNKYVEL-GIGRALDT---VTVSAAQLVLAIVDVIENP----KYRKNLKELRHLIRH 448 (507)
T ss_pred HHHHHHcCCCEEECCCCccHHHHHHHHHHc-CcEEEecc---CCcCHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHh
Confidence 999999999999999999999999999987 99999998 8899999999999999999 999999999999984
Q ss_pred HhhcccCCCCchHHHHHHHHHHHHhhh
Q 042731 444 AVRNETNFKGSSVKAMDQFLNAALIMR 470 (481)
Q Consensus 444 ~~~~~~~~~gs~~~~~~~~~~~~~~~~ 470 (481)
. .-+..+.+..-+|.+.+.+
T Consensus 449 ~-------p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 449 Q-------PMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred C-------CCCHHHHHHHHHHHHHhCC
Confidence 3 3223344445555555544
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.2e-42 Score=348.57 Aligned_cols=374 Identities=20% Similarity=0.225 Sum_probs=248.2
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQ 80 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (481)
|+.||++|+++||++|++ +||+|+|++++.+.+.+++ .|++|..++........... ............+..
T Consensus 4 p~~Ghv~P~l~lA~~L~~-~Gh~V~~~~~~~~~~~v~~-----~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 75 (392)
T TIGR01426 4 PAHGHVNPTLGVVEELVA-RGHRVTYATTEEFAERVEA-----AGAEFVLYGSALPPPDNPPE--NTEEEPIDIIEKLLD 75 (392)
T ss_pred CccccccccHHHHHHHHh-CCCeEEEEeCHHHHHHHHH-----cCCEEEecCCcCcccccccc--ccCcchHHHHHHHHH
Confidence 789999999999999999 9999999999999999999 77888877742111111110 000000001111111
Q ss_pred HHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhhcCCCCCCCCCccc
Q 042731 81 ASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHRSTDSDEFL 160 (481)
Q Consensus 81 ~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 160 (481)
......+.+.++++.+ +||+||+|.+++++..+|+++|||+|.+.+.+... . .+.+.
T Consensus 76 ~~~~~~~~l~~~~~~~-------~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~--~-----~~~~~--------- 132 (392)
T TIGR01426 76 EAEDVLPQLEEAYKGD-------RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN--E-----EFEEM--------- 132 (392)
T ss_pred HHHHHHHHHHHHhcCC-------CCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc--c-----ccccc---------
Confidence 1122233344444444 89999999988899999999999999875432110 0 00000
Q ss_pred cCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhh------------ccCceEEEccchhhhhhHHHHHHhhcCCC
Q 042731 161 LPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLW------------KDADGILVNTVEELDKIGLMYFKRKFGRP 228 (481)
Q Consensus 161 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 228 (481)
.+.+...++........ ....+.+.+....... ......+..+. +++.+....|+++
T Consensus 133 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~-----~~l~~~~~~~~~~ 201 (392)
T TIGR01426 133 VSPAGEGSAEEGAIAER------GLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTP-----KAFQPAGETFDDS 201 (392)
T ss_pred ccccchhhhhhhccccc------hhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCC-----hHhCCCccccCCC
Confidence 00000000000000000 0001111111111111 01111222333 3333334568899
Q ss_pred eeeecccccCccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCC
Q 042731 229 VWPIGPVLLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGF 308 (481)
Q Consensus 229 ~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 308 (481)
++++||+.... .+...|+...+.+++||||+||+.....+.+..+++++...+.+++|.++...
T Consensus 202 ~~~~Gp~~~~~--------------~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~-- 265 (392)
T TIGR01426 202 FTFVGPCIGDR--------------KEDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGV-- 265 (392)
T ss_pred eEEECCCCCCc--------------cccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCC--
Confidence 99999987653 01223666556688999999998766667888899999999999999887552
Q ss_pred CCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHH
Q 042731 309 DINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSK 388 (481)
Q Consensus 309 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~ 388 (481)
-...+.. .+.++.+.+|+|+.++|+++++ +|||||+||++||+++|||+|++|...||+.|+.
T Consensus 266 -----------~~~~~~~----~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~ 328 (392)
T TIGR01426 266 -----------DPADLGE----LPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTAR 328 (392)
T ss_pred -----------ChhHhcc----CCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHH
Confidence 0011110 1568889999999999999775 9999999999999999999999999999999999
Q ss_pred HHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHH
Q 042731 389 LLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFLNA 465 (481)
Q Consensus 389 ~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~ 465 (481)
++++. |+|..+.. ..++++.|.++|.++|+|+ +|+++++++++.++ +.+| ..++++.+++.
T Consensus 329 ~l~~~-g~g~~l~~---~~~~~~~l~~ai~~~l~~~----~~~~~~~~l~~~~~-------~~~~-~~~aa~~i~~~ 389 (392)
T TIGR01426 329 RIAEL-GLGRHLPP---EEVTAEKLREAVLAVLSDP----RYAERLRKMRAEIR-------EAGG-ARRAADEIEGF 389 (392)
T ss_pred HHHHC-CCEEEecc---ccCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHH-------HcCC-HHHHHHHHHHh
Confidence 99977 99999987 7889999999999999998 89999999999998 4466 45555555444
No 24
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.7e-44 Score=373.46 Aligned_cols=380 Identities=24% Similarity=0.325 Sum_probs=218.8
Q ss_pred CCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCC-----CCC-Cch
Q 042731 2 AQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDS-----IPY-HLF 75 (481)
Q Consensus 2 ~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~-~~~ 75 (481)
+.||++++.+|+++|++ |||+||++++... ..+..... ..+++..++.+.....+......... ... ...
T Consensus 9 ~~SH~~~~~~l~~~L~~-rGH~VTvl~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (500)
T PF00201_consen 9 AYSHFIFMRPLAEELAE-RGHNVTVLTPSPS-SSLNPSKP--SNIRFETYPDPYPEEEFEEIFPEFISKFFSESSFANSF 84 (500)
T ss_dssp ---SHHHHHHHHHHHHH-H-TTSEEEHHHHH-HT--------S-CCEEEE-----TT------TTHHHHHHHHHCCHHHH
T ss_pred CcCHHHHHHHHHHHHHh-cCCceEEEEeecc-cccccccc--cceeeEEEcCCcchHHHhhhhHHHHHHHhhhcccchhH
Confidence 67999999999999999 9999999997532 22332222 55666666643111111111000000 000 000
Q ss_pred HHHHHHHhh-------hh------HHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHHHH-H-
Q 042731 76 PKFLQASAS-------LE------PHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGF-A- 140 (481)
Q Consensus 76 ~~~~~~~~~-------~~------~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~-~- 140 (481)
...+..... .+ +.+.+.++.. ++|++|+|.+..|+..+|+.+|||.+.+.+...... .
T Consensus 85 ~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~-------~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~~~~~ 157 (500)
T PF00201_consen 85 WEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE-------KFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMYDLSS 157 (500)
T ss_dssp HHHHHHHHCHHHS----E--EEEETTSTTHHHHH-------HHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCSCCTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh-------ccccceEeeccchhHHHHHHhcCCeEEEecccccchhhh
Confidence 001111100 00 1112233444 799999999888999999999999986432211000 0
Q ss_pred ---HHHHhhhcCCCCCCCCCccccCCCCCCCccc--cCccChhh---------hcC--CCCChHHHHHHHHHHhhccCce
Q 042731 141 ---CLYSMLLNLPHRSTDSDEFLLPDFPEASTLH--VTQISPYL---------RAT--DGSDSFSVFYKKLLLLWKDADG 204 (481)
Q Consensus 141 ---~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~---------~~~--~~~~~~~~~~~~~~~~~~~~~~ 204 (481)
..+.++.+.|... ..++..+.+. .......+ ... .........-....+.+.....
T Consensus 158 ~~~g~p~~psyvP~~~--------s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 229 (500)
T PF00201_consen 158 FSGGVPSPPSYVPSMF--------SDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSNASL 229 (500)
T ss_dssp CTSCCCTSTTSTTCBC--------CCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHHHHH
T ss_pred hccCCCCChHHhcccc--------ccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHHHHH
Confidence 0001111111100 0111111111 11110000 000 0000000000000111222333
Q ss_pred EEEccchhhhhhHHHHHHhhcCCCeeeecccccCccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccC-HHH
Q 042731 205 ILVNTVEELDKIGLMYFKRKFGRPVWPIGPVLLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIA-ASQ 283 (481)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~-~~~ 283 (481)
+++|+.+.++.| + +++|++.+||++.... ..+++.++.+|++...++++|||||||+.... .+.
T Consensus 230 ~l~ns~~~ld~p-----r-p~~p~v~~vGgl~~~~---------~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~ 294 (500)
T PF00201_consen 230 VLINSHPSLDFP-----R-PLLPNVVEVGGLHIKP---------AKPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEK 294 (500)
T ss_dssp CCSSTEEE---------H-HHHCTSTTGCGC-S-------------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHH
T ss_pred HhhhccccCcCC-----c-chhhcccccCcccccc---------ccccccccchhhhccCCCCEEEEecCcccchhHHHH
Confidence 455555555433 3 3458899999987654 13568889999998556899999999997543 455
Q ss_pred HHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchh
Q 042731 284 MMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNS 363 (481)
Q Consensus 284 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt 363 (481)
..+++++++..+++|||++... .+..+ ++|+.+.+|+||.+||+|+++++||||||+||
T Consensus 295 ~~~~~~~~~~~~~~~iW~~~~~--------------~~~~l-------~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s 353 (500)
T PF00201_consen 295 LKEIAEAFENLPQRFIWKYEGE--------------PPENL-------PKNVLIVKWLPQNDLLAHPRVKLFITHGGLNS 353 (500)
T ss_dssp HHHHHHHHHCSTTEEEEEETCS--------------HGCHH-------HTTEEEESS--HHHHHTSTTEEEEEES--HHH
T ss_pred HHHHHHHHhhCCCccccccccc--------------ccccc-------cceEEEeccccchhhhhcccceeeeeccccch
Confidence 7889999999999999999754 12222 56888999999999999999999999999999
Q ss_pred HHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH
Q 042731 364 VLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKN 443 (481)
Q Consensus 364 ~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~ 443 (481)
++||+++|||||++|+.+||+.||.+++++ |+|+.++. ..++++.|.++|+++|+|+ +|++||+++++.+++
T Consensus 354 ~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~-G~g~~l~~---~~~~~~~l~~ai~~vl~~~----~y~~~a~~ls~~~~~ 425 (500)
T PF00201_consen 354 TQEALYHGVPMLGIPLFGDQPRNAARVEEK-GVGVVLDK---NDLTEEELRAAIREVLENP----SYKENAKRLSSLFRD 425 (500)
T ss_dssp HHHHHHCT--EEE-GCSTTHHHHHHHHHHT-TSEEEEGG---GC-SHHHHHHHHHHHHHSH----HHHHHHHHHHHTTT-
T ss_pred hhhhhhccCCccCCCCcccCCccceEEEEE-eeEEEEEe---cCCcHHHHHHHHHHHHhhh----HHHHHHHHHHHHHhc
Confidence 999999999999999999999999999988 99999999 8999999999999999999 999999999999985
Q ss_pred H
Q 042731 444 A 444 (481)
Q Consensus 444 ~ 444 (481)
.
T Consensus 426 ~ 426 (500)
T PF00201_consen 426 R 426 (500)
T ss_dssp -
T ss_pred C
Confidence 4
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.5e-40 Score=334.78 Aligned_cols=360 Identities=15% Similarity=0.118 Sum_probs=230.9
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCC---CCCCchHH
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDS---IPYHLFPK 77 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~ 77 (481)
|+.||++|+++||++|++ +||+|+|++++.+...++. .|++|..++...... ......... ........
T Consensus 9 p~~GHv~P~l~la~~L~~-rGh~V~~~t~~~~~~~v~~-----~G~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 80 (401)
T cd03784 9 GSRGDVQPLVALAWALRA-AGHEVRVATPPEFADLVEA-----AGLEFVPVGGDPDEL--LASPERNAGLLLLGPGLLLG 80 (401)
T ss_pred CCcchHHHHHHHHHHHHH-CCCeEEEeeCHhHHHHHHH-----cCCceeeCCCCHHHH--HhhhhhcccccccchHHHHH
Confidence 689999999999999999 9999999999999999988 778888776321100 000000000 00001111
Q ss_pred HHH----HHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhhcCCCCC
Q 042731 78 FLQ----ASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHRS 153 (481)
Q Consensus 78 ~~~----~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~ 153 (481)
... ....+.+.+.+.++++ +||+||+|.+++++..+|+++|||++.+.+++........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-------~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~---------- 143 (401)
T cd03784 81 ALRLLRREAEAMLDDLVAAARDW-------GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFP---------- 143 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-------CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCC----------
Confidence 111 1122222233333334 8999999998889999999999999998876533211000
Q ss_pred CCCCccccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhcc---------CceEEEccchhhhhhHHHHHHhh
Q 042731 154 TDSDEFLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKD---------ADGILVNTVEELDKIGLMYFKRK 224 (481)
Q Consensus 154 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~ 224 (481)
.| + . .........+...................+.. ....+... .+.+......
T Consensus 144 -------~~-~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 206 (401)
T cd03784 144 -------PP-L-G---RANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGF-----SPAVLPPPPD 206 (401)
T ss_pred -------Cc-c-c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEec-----CcccCCCCCC
Confidence 00 0 0 00000000000000000111111111111110 01111111 1111122345
Q ss_pred cCCCeeeecc-cccCccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccC-HHHHHHHHHHHHhcCCceEEEE
Q 042731 225 FGRPVWPIGP-VLLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIA-ASQMMQLAMALEASGKNFIWVV 302 (481)
Q Consensus 225 ~~~~~~~vGp-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~i~~~ 302 (481)
|+++..++|. +.... . ....+.++..|++.. +++|||||||+.... ...+..++++++..+.++||++
T Consensus 207 ~~~~~~~~g~~~~~~~-~-------~~~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 276 (401)
T cd03784 207 WPRFDLVTGYGFRDVP-Y-------NGPPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSL 276 (401)
T ss_pred ccccCcEeCCCCCCCC-C-------CCCCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEc
Confidence 6677777763 33222 1 123456778888764 679999999997644 4667889999999999999998
Q ss_pred cCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccccc
Q 042731 303 RPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAE 382 (481)
Q Consensus 303 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~D 382 (481)
+... ..... .++|+.+.+|+||.++|+++++ ||||||+||++||+++|||+|++|+..|
T Consensus 277 g~~~------------~~~~~-------~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~d 335 (401)
T cd03784 277 GWGG------------LGAED-------LPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGD 335 (401)
T ss_pred cCcc------------ccccC-------CCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCC
Confidence 7652 00000 0578999999999999999775 9999999999999999999999999999
Q ss_pred hhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 042731 383 QFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIK 442 (481)
Q Consensus 383 Q~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~ 442 (481)
|+.||.++++. |+|+.+.. ..++++.|.++|+++++++ ++++++++++.++
T Consensus 336 Q~~~a~~~~~~-G~g~~l~~---~~~~~~~l~~al~~~l~~~-----~~~~~~~~~~~~~ 386 (401)
T cd03784 336 QPFWAARVAEL-GAGPALDP---RELTAERLAAALRRLLDPP-----SRRRAAALLRRIR 386 (401)
T ss_pred cHHHHHHHHHC-CCCCCCCc---ccCCHHHHHHHHHHHhCHH-----HHHHHHHHHHHHH
Confidence 99999999977 99999987 6689999999999999965 6667777777775
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-38 Score=316.10 Aligned_cols=383 Identities=19% Similarity=0.182 Sum_probs=238.5
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQ 80 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (481)
|+.||++|+++||++|++ +||+|+|++++.+++++++ .|+.|..++.. +. ..............+.....
T Consensus 10 ~~~Ghv~p~~aL~~eL~~-~gheV~~~~~~~~~~~ve~-----ag~~f~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~ 79 (406)
T COG1819 10 GAYGHVNPCLALGKELRR-RGHEVVFASTGKFKEFVEA-----AGLAFVAYPIR-DS---ELATEDGKFAGVKSFRRLLQ 79 (406)
T ss_pred cccccccchHHHHHHHHh-cCCeEEEEeCHHHHHHHHH-----hCcceeecccc-CC---hhhhhhhhhhccchhHHHhh
Confidence 568999999999999999 9999999999999999999 56666665632 00 00000000000110111222
Q ss_pred HHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhhcCCCCCCCCCccc
Q 042731 81 ASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHRSTDSDEFL 160 (481)
Q Consensus 81 ~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 160 (481)
........+.+++.+. .||+++.|.....+ .+++..++|++....+..+....... +.......
T Consensus 80 ~~~~~~~~~~~~~~e~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--- 143 (406)
T COG1819 80 QFKKLIRELLELLREL-------EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGL-----PLPPVGIA--- 143 (406)
T ss_pred hhhhhhHHHHHHHHhc-------chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCccccc-----Cccccccc---
Confidence 2233344445666666 89999999765544 88888999999766544332111110 00000000
Q ss_pred cCCCCCCCccccCccChhhhcCCCCChHH--HHHHHHHHhhccCc---eEEEccchhhhhhHHHHHH---hhcCCCeeee
Q 042731 161 LPDFPEASTLHVTQISPYLRATDGSDSFS--VFYKKLLLLWKDAD---GILVNTVEELDKIGLMYFK---RKFGRPVWPI 232 (481)
Q Consensus 161 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~---~~~~~~~~~v 232 (481)
+.+..+...++............. ....+....+.... ..+...-..++..+.+... ..+|....++
T Consensus 144 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 218 (406)
T COG1819 144 -----GKLPIPLYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPYI 218 (406)
T ss_pred -----ccccccccccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCcCcc
Confidence 000011111111111111111110 00000000000000 0000011111111111000 1123444555
Q ss_pred cccccCccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcc
Q 042731 233 GPVLLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDINS 312 (481)
Q Consensus 233 Gpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 312 (481)
||+.... ..+...|... .+++||+|+||+... .+++..++++++..+.++|+.++...
T Consensus 219 ~~~~~~~-------------~~~~~~~~~~--d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~~------ 276 (406)
T COG1819 219 GPLLGEA-------------ANELPYWIPA--DRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGAR------ 276 (406)
T ss_pred ccccccc-------------cccCcchhcC--CCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccccc------
Confidence 5555443 2333344333 377999999999866 88899999999999999999987621
Q ss_pred hhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHHHHH
Q 042731 313 EFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEE 392 (481)
Q Consensus 313 ~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~ 392 (481)
. .. ..+ +.|+.+.+|+||.++|+++++ ||||||+|||+|||++|||+|++|...||+.||.++++
T Consensus 277 ~-~~-~~~-----------p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~ 341 (406)
T COG1819 277 D-TL-VNV-----------PDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE 341 (406)
T ss_pred c-cc-ccC-----------CCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH
Confidence 0 00 001 678999999999999999886 99999999999999999999999999999999999997
Q ss_pred HhcceEEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHh
Q 042731 393 EMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFLNAALI 468 (481)
Q Consensus 393 ~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 468 (481)
. |+|..+.. ..++++.|+++|+++|+|+ .|+++++++++.++ ..+| .+.+++.++.+.+
T Consensus 342 ~-G~G~~l~~---~~l~~~~l~~av~~vL~~~----~~~~~~~~~~~~~~-------~~~g--~~~~a~~le~~~~ 400 (406)
T COG1819 342 L-GAGIALPF---EELTEERLRAAVNEVLADD----SYRRAAERLAEEFK-------EEDG--PAKAADLLEEFAR 400 (406)
T ss_pred c-CCceecCc---ccCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHhh-------hccc--HHHHHHHHHHHHh
Confidence 7 99999998 8999999999999999999 99999999999998 4466 4445555555433
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=4.9e-38 Score=325.28 Aligned_cols=422 Identities=28% Similarity=0.409 Sum_probs=244.1
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEE---EEecCCCCCCCCCCCCCCCCCCCCCchHH
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHL---LEIPFNSVEHDLPPCTENTDSIPYHLFPK 77 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 77 (481)
|++||++|++.||+.|++ +||+||++++.......... .....+.. ...++....++++....... ......
T Consensus 14 p~~sH~~~~~~la~~L~~-~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 88 (496)
T KOG1192|consen 14 PGQSHLNPMLQLAKRLAE-RGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDDD---LDISES 88 (496)
T ss_pred CcccHHHHHHHHHHHHHH-cCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHHH---HHHHHH
Confidence 689999999999999999 99999999988665544331 10011111 11111100011221111100 000011
Q ss_pred HHHHHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhC-CceEEEechhHHHHHHHH-HhhhcCCCCCCC
Q 042731 78 FLQASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYG-IFHAIFIGGGGFGFACLY-SMLLNLPHRSTD 155 (481)
Q Consensus 78 ~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~-~~~~~~p~~~~~ 155 (481)
...........+.+.+......... ++|++|+|.+..|...+|...+ |+..++.+.+........ .+..+.|.....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~ 167 (496)
T KOG1192|consen 89 LLELNKTCEDLLRDPLEKLLLLKSE-KFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLSYVPSPFSL 167 (496)
T ss_pred HHHHHHHHHHHHhchHHHHHHhhcC-CccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcccccCcccCc
Confidence 1111122222223322222111111 4999999998777777777764 888888776665443322 111122221111
Q ss_pred C--CccccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhh----ccCceEEEcc-chhhhhhHHHHH-HhhcCC
Q 042731 156 S--DEFLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLW----KDADGILVNT-VEELDKIGLMYF-KRKFGR 227 (481)
Q Consensus 156 ~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~l~~~~~~~~-~~~~~~ 227 (481)
. +...+++...+ +....++....................... .....++.++ +..+++...... .....+
T Consensus 168 ~~~~~~~~~~~~~n--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~~~~~~~~ 245 (496)
T KOG1192|consen 168 SSGDDMSFPERVPN--LIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLDFEPRPLLP 245 (496)
T ss_pred cccccCcHHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccCCCCCCCCC
Confidence 0 00000000000 000001111110000000000000000000 1111223333 444444333222 223468
Q ss_pred CeeeecccccCccccccccccCCCChhhhhhhhcCCCCC--eEEEEEccccc---ccCHHHHHHHHHHHHhc-CCceEEE
Q 042731 228 PVWPIGPVLLSTESRAGARKEYGISTELCKKWLDTKPYT--SVLYVSFGSQN---TIAASQMMQLAMALEAS-GKNFIWV 301 (481)
Q Consensus 228 ~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~V~vs~Gs~~---~~~~~~~~~~~~al~~~-~~~~i~~ 301 (481)
++++|||+...... .....+.+|++..+.. ++|||||||+. ..+.++..+++.+++.. +..|+|+
T Consensus 246 ~v~~IG~l~~~~~~---------~~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~ 316 (496)
T KOG1192|consen 246 KVIPIGPLHVKDSK---------QKSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWK 316 (496)
T ss_pred CceEECcEEecCcc---------ccccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEE
Confidence 89999999877411 1111455666655544 89999999998 68899999999999999 8889999
Q ss_pred EcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHh-hcccCccceeeccCchhHHHHHHhCCcEEecccc
Q 042731 302 VRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEI-LSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLA 380 (481)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~l-l~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~ 380 (481)
+..... ..+++++.++ . .+|++..+|+||.++ |+|+++++|||||||||++|++++|||+|++|+.
T Consensus 317 ~~~~~~----------~~~~~~~~~~-~--~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf 383 (496)
T KOG1192|consen 317 YRPDDS----------IYFPEGLPNR-G--RGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLF 383 (496)
T ss_pred ecCCcc----------hhhhhcCCCC-C--cCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCcc
Confidence 987520 0012222211 1 567888899999998 5999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHH
Q 042731 381 AEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMD 460 (481)
Q Consensus 381 ~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~ 460 (481)
+||+.||.+++++ |.|..+.. ..++.+.+.+++.++++++ +|+++++++++.++ +...+. ..+.
T Consensus 384 ~DQ~~Na~~i~~~-g~~~v~~~---~~~~~~~~~~~~~~il~~~----~y~~~~~~l~~~~~-------~~p~~~-~~~~ 447 (496)
T KOG1192|consen 384 GDQPLNARLLVRH-GGGGVLDK---RDLVSEELLEAIKEILENE----EYKEAAKRLSEILR-------DQPISP-ELAV 447 (496)
T ss_pred ccchhHHHHHHhC-CCEEEEeh---hhcCcHHHHHHHHHHHcCh----HHHHHHHHHHHHHH-------cCCCCH-HHHH
Confidence 9999999999999 65555555 5666666999999999999 99999999999998 445544 4444
Q ss_pred HHHHHHHh
Q 042731 461 QFLNAALI 468 (481)
Q Consensus 461 ~~~~~~~~ 468 (481)
.-+|...+
T Consensus 448 ~~~e~~~~ 455 (496)
T KOG1192|consen 448 KWVEFVAR 455 (496)
T ss_pred HHHHHHHh
Confidence 33344444
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.94 E-value=1.7e-24 Score=212.31 Aligned_cols=302 Identities=16% Similarity=0.165 Sum_probs=192.5
Q ss_pred CCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHH
Q 042731 3 QGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQAS 82 (481)
Q Consensus 3 ~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (481)
=||++|.++||++|++ +||+|+|+++.... +....+..++.+..++.. ++.. ... +..+....
T Consensus 12 GGHi~Pala~a~~l~~-~g~~v~~vg~~~~~---e~~l~~~~g~~~~~~~~~----~l~~------~~~---~~~~~~~~ 74 (352)
T PRK12446 12 AGHVTPNLAIIPYLKE-DNWDISYIGSHQGI---EKTIIEKENIPYYSISSG----KLRR------YFD---LKNIKDPF 74 (352)
T ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEECCCcc---ccccCcccCCcEEEEecc----CcCC------Cch---HHHHHHHH
Confidence 3899999999999999 99999999977543 222221156777766631 1111 001 11111111
Q ss_pred --hhhhHHHHHHHHHHhhccCCCCccEEEeCCCCc--hHHHHHHHhCCceEEEechhHHHHHHHHHhhhcCCCCCCCCCc
Q 042731 83 --ASLEPHFKKLISELVNEQNGQKPLCIITDTFLG--WCKETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHRSTDSDE 158 (481)
Q Consensus 83 --~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 158 (481)
....-....+++++ +||+||+...+. ++..+|..+|+|+++.....
T Consensus 75 ~~~~~~~~~~~i~~~~-------kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~----------------------- 124 (352)
T PRK12446 75 LVMKGVMDAYVRIRKL-------KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM----------------------- 124 (352)
T ss_pred HHHHHHHHHHHHHHhc-------CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC-----------------------
Confidence 11222335678888 999999886433 57889999999998754321
Q ss_pred cccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHhhcC-CCeeeeccccc
Q 042731 159 FLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRKFG-RPVWPIGPVLL 237 (481)
Q Consensus 159 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~vGpl~~ 237 (481)
.+++.+ +++ .+.++ .+..+|++-. ..++ .++.++|+...
T Consensus 125 --~~g~~n-----------------------r~~------~~~a~-~v~~~f~~~~--------~~~~~~k~~~tG~Pvr 164 (352)
T PRK12446 125 --TPGLAN-----------------------KIA------LRFAS-KIFVTFEEAA--------KHLPKEKVIYTGSPVR 164 (352)
T ss_pred --CccHHH-----------------------HHH------HHhhC-EEEEEccchh--------hhCCCCCeEEECCcCC
Confidence 222221 000 11111 1223332111 1122 57889997665
Q ss_pred CccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCH-HHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhh
Q 042731 238 STESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAA-SQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKA 316 (481)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~ 316 (481)
+... ........+.+.-.+.+++|+|+.||...... +.+.+++..+.. +.+++|++|.+.
T Consensus 165 ~~~~--------~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~---------- 225 (352)
T PRK12446 165 EEVL--------KGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN---------- 225 (352)
T ss_pred cccc--------cccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch----------
Confidence 4311 01122222233333457799999999987554 445555555533 478899988651
Q ss_pred cCCCchhHHHHhccCCCcEEEeccc-CH-HHhhcccCccceeeccCchhHHHHHHhCCcEEecccc-----cchhhhHHH
Q 042731 317 NKWLPRGFEERIKCSGQGLVVHKWA-PQ-VEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLA-----AEQFYNSKL 389 (481)
Q Consensus 317 ~~~l~~~~~~~~~~~~~~~~v~~~i-p~-~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~-----~DQ~~na~~ 389 (481)
+..... . ..++.+.+|+ ++ .+++.++++ +|||||.+|++|++++|+|+|++|+. .||..||..
T Consensus 226 ---~~~~~~-~----~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~ 295 (352)
T PRK12446 226 ---LDDSLQ-N----KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAES 295 (352)
T ss_pred ---HHHHHh-h----cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHH
Confidence 111110 0 1244556887 44 468988886 99999999999999999999999984 489999999
Q ss_pred HHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCC
Q 042731 390 LEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 390 v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
+++. |+|..+.. ..++++.|.++|.++++|+
T Consensus 296 l~~~-g~~~~l~~---~~~~~~~l~~~l~~ll~~~ 326 (352)
T PRK12446 296 FERQ-GYASVLYE---EDVTVNSLIKHVEELSHNN 326 (352)
T ss_pred HHHC-CCEEEcch---hcCCHHHHHHHHHHHHcCH
Confidence 9987 99999987 7899999999999999876
No 29
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=1.5e-22 Score=196.06 Aligned_cols=316 Identities=21% Similarity=0.208 Sum_probs=199.1
Q ss_pred CCChHHHHHHHHHHHhCCCC-EEEEEeCCcchh-hhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 042731 3 QGHIIPFLALARRLEETNKY-TITLVNTPLNLK-KLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQ 80 (481)
Q Consensus 3 ~GHv~P~l~LA~~L~~~~Gh-~Vt~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (481)
=||+.|.++|+++|.+ +|+ +|.+..+....+ .+.+. .++++..++.. .+... .....+...+.
T Consensus 11 GGHv~pAlAl~~~l~~-~g~~~v~~~~~~~~~e~~l~~~----~~~~~~~I~~~----~~~~~------~~~~~~~~~~~ 75 (357)
T COG0707 11 GGHVFPALALAEELAK-RGWEQVIVLGTGDGLEAFLVKQ----YGIEFELIPSG----GLRRK------GSLKLLKAPFK 75 (357)
T ss_pred ccchhHHHHHHHHHHh-hCccEEEEecccccceeeeccc----cCceEEEEecc----ccccc------CcHHHHHHHHH
Confidence 4999999999999999 999 588886653322 22221 56777777742 11110 00001111111
Q ss_pred HHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCC--chHHHHHHHhCCceEEEechhHHHHHHHHHhhhcCCCCCCCCCc
Q 042731 81 ASASLEPHFKKLISELVNEQNGQKPLCIITDTFL--GWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHRSTDSDE 158 (481)
Q Consensus 81 ~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 158 (481)
. .......+.+|+++ +||+||+..-+ .++..+|..+|||.++.-.
T Consensus 76 ~-~~~~~~a~~il~~~-------kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEq------------------------- 122 (357)
T COG0707 76 L-LKGVLQARKILKKL-------KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQ------------------------- 122 (357)
T ss_pred H-HHHHHHHHHHHHHc-------CCCEEEecCCccccHHHHHHHhCCCCEEEEec-------------------------
Confidence 1 12233447899999 99999996443 3777888889999997443
Q ss_pred cccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHhhcCCCeeeec-cccc
Q 042731 159 FLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRKFGRPVWPIG-PVLL 237 (481)
Q Consensus 159 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vG-pl~~ 237 (481)
...++..+ ++. ......+..++...+.- .-+.++..+| |+..
T Consensus 123 n~~~G~an-----------------------k~~-------~~~a~~V~~~f~~~~~~-------~~~~~~~~tG~Pvr~ 165 (357)
T COG0707 123 NAVPGLAN-----------------------KIL-------SKFAKKVASAFPKLEAG-------VKPENVVVTGIPVRP 165 (357)
T ss_pred CCCcchhH-----------------------HHh-------HHhhceeeecccccccc-------CCCCceEEecCcccH
Confidence 12333322 000 01111122233221100 0023578888 4444
Q ss_pred CccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCH-HHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhh
Q 042731 238 STESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAA-SQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKA 316 (481)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~ 316 (481)
.. ...+.....+.... .+++|+|+.||++.... +.+.++...+.+ +..+++.++.+.
T Consensus 166 ~~----------~~~~~~~~~~~~~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~---------- 223 (357)
T COG0707 166 EF----------EELPAAEVRKDGRL-DKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND---------- 223 (357)
T ss_pred Hh----------hccchhhhhhhccC-CCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch----------
Confidence 33 11111111121121 47799999999986543 334445555554 567777777651
Q ss_pred cCCCchhHHHHhccCCCc-EEEecccCHH-HhhcccCccceeeccCchhHHHHHHhCCcEEecccc----cchhhhHHHH
Q 042731 317 NKWLPRGFEERIKCSGQG-LVVHKWAPQV-EILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLA----AEQFYNSKLL 390 (481)
Q Consensus 317 ~~~l~~~~~~~~~~~~~~-~~v~~~ip~~-~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~----~DQ~~na~~v 390 (481)
......... ..+ +.+.+|++++ .++..+++ +||++|.+|+.|+++.|+|+|.+|+. .||..||..+
T Consensus 224 ----~~~~~~~~~--~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l 295 (357)
T COG0707 224 ----LEELKSAYN--ELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFL 295 (357)
T ss_pred ----HHHHHHHHh--hcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHH
Confidence 123333333 222 7888998886 58877775 99999999999999999999999984 3899999999
Q ss_pred HHHhcceEEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 042731 391 EEEMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEV 437 (481)
Q Consensus 391 ~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~ 437 (481)
+++ |.|..+.. .++|++.+.+.|.+++++++..+.|+++++++
T Consensus 296 ~~~-gaa~~i~~---~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~ 338 (357)
T COG0707 296 EKA-GAALVIRQ---SELTPEKLAELILRLLSNPEKLKAMAENAKKL 338 (357)
T ss_pred HhC-CCEEEecc---ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999 99999998 88999999999999999874554555555444
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.91 E-value=1.7e-22 Score=197.01 Aligned_cols=297 Identities=24% Similarity=0.254 Sum_probs=184.9
Q ss_pred CCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHH---
Q 042731 2 AQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKF--- 78 (481)
Q Consensus 2 ~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--- 78 (481)
|.||+.+.++||++| + ||+|+|++.....+.+.+ . +....++. +..................
T Consensus 11 G~GH~~R~~~la~~L-r--g~~v~~~~~~~~~~~~~~-----~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 75 (318)
T PF13528_consen 11 GLGHASRCLALARAL-R--GHEVTFITSGPAPEFLKP-----R-FPVREIPG------LGPIQENGRLDRWKTVRNNIRW 75 (318)
T ss_pred CcCHHHHHHHHHHHH-c--cCceEEEEcCCcHHHhcc-----c-cCEEEccC------ceEeccCCccchHHHHHHHHHh
Confidence 789999999999999 5 899999998876666654 2 34444431 1111111100000001111
Q ss_pred HHHHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhhcCCCCCCCCCc
Q 042731 79 LQASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHRSTDSDE 158 (481)
Q Consensus 79 ~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 158 (481)
........+.+.+++++. +||+||+|. .+.+..+|+..|||++.+.......
T Consensus 76 ~~~~~~~~~~~~~~l~~~-------~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~-------------------- 127 (318)
T PF13528_consen 76 LARLARRIRREIRWLREF-------RPDLVISDF-YPLAALAARRAGIPVIVISNQYWFL-------------------- 127 (318)
T ss_pred hHHHHHHHHHHHHHHHhc-------CCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHcc--------------------
Confidence 111223344455666667 999999995 4667789999999999887743221
Q ss_pred cccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHh--hccCceEEEccchhhhhhHHHHHHhhcCCCeeeecccc
Q 042731 159 FLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLL--WKDADGILVNTVEELDKIGLMYFKRKFGRPVWPIGPVL 236 (481)
Q Consensus 159 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGpl~ 236 (481)
.+... ... ...+..++.+.... ...+...+.-++. .. .....++..+||+.
T Consensus 128 --~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~--------~~~~~~~~~~~p~~ 180 (318)
T PF13528_consen 128 --HPNFW----LPW------------DQDFGRLIERYIDRYHFPPADRRLALSFY-PP--------LPPFFRVPFVGPII 180 (318)
T ss_pred --cccCC----cch------------hhhHHHHHHHhhhhccCCcccceecCCcc-cc--------ccccccccccCchh
Confidence 00000 000 01122222222221 2333333333332 10 01124466788877
Q ss_pred cCccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcC-CceEEEEcCCCCCCCcchhh
Q 042731 237 LSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASG-KNFIWVVRPPIGFDINSEFK 315 (481)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~ 315 (481)
..... +... .+++.|+|+||..... .++++++..+ +.+++. +...
T Consensus 181 ~~~~~----------------~~~~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~--------- 226 (318)
T PF13528_consen 181 RPEIR----------------ELPP--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA--------- 226 (318)
T ss_pred ccccc----------------ccCC--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc---------
Confidence 65411 0001 1345799999998643 6667777765 566655 4431
Q ss_pred hcCCCchhHHHHhccCCCcEEEeccc--CHHHhhcccCccceeeccCchhHHHHHHhCCcEEeccc--ccchhhhHHHHH
Q 042731 316 ANKWLPRGFEERIKCSGQGLVVHKWA--PQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPL--AAEQFYNSKLLE 391 (481)
Q Consensus 316 ~~~~l~~~~~~~~~~~~~~~~v~~~i--p~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~--~~DQ~~na~~v~ 391 (481)
.-+. ..|+.+.+|. ...++|..+++ +|||||+||++|++++|+|+|++|. ..+|..||.+++
T Consensus 227 ---~~~~---------~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~ 292 (318)
T PF13528_consen 227 ---ADPR---------PGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLE 292 (318)
T ss_pred ---cccc---------CCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHH
Confidence 0111 5688888876 34578988775 9999999999999999999999999 679999999999
Q ss_pred HHhcceEEeeccCCcccCHHHHHHHHHHH
Q 042731 392 EEMGVCVEIARGMSCEVLKEDLSAKIELV 420 (481)
Q Consensus 392 ~~lG~G~~~~~~~~~~~~~~~l~~~i~~v 420 (481)
+. |+|..+.. ..++++.|++.|.++
T Consensus 293 ~~-G~~~~~~~---~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 293 EL-GLGIVLSQ---EDLTPERLAEFLERL 317 (318)
T ss_pred HC-CCeEEccc---ccCCHHHHHHHHhcC
Confidence 77 99999988 899999999998764
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.88 E-value=5.5e-21 Score=186.15 Aligned_cols=124 Identities=20% Similarity=0.241 Sum_probs=89.2
Q ss_pred CeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccC--H
Q 042731 266 TSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAP--Q 343 (481)
Q Consensus 266 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip--~ 343 (481)
.+.|+|.+|+... ..+++++...+. +.++++... ...+.+ ++|+.+.+|.| .
T Consensus 188 ~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~~------------~~~~~~-------~~~v~~~~~~~~~~ 241 (321)
T TIGR00661 188 EDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSYE------------VAKNSY-------NENVEIRRITTDNF 241 (321)
T ss_pred CCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCCC------------CCcccc-------CCCEEEEECChHHH
Confidence 4468888888642 345667766553 333333221 011111 45788889997 3
Q ss_pred HHhhcccCccceeeccCchhHHHHHHhCCcEEeccccc--chhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHh
Q 042731 344 VEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAA--EQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVM 421 (481)
Q Consensus 344 ~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl 421 (481)
.++|+.++ ++|||||++|++|++++|+|++++|... ||..||..+++. |+|+.+.. .++ .+.+++.+++
T Consensus 242 ~~~l~~ad--~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~-g~~~~l~~---~~~---~~~~~~~~~~ 312 (321)
T TIGR00661 242 KELIKNAE--LVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL-GCGIALEY---KEL---RLLEAILDIR 312 (321)
T ss_pred HHHHHhCC--EEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC-CCEEEcCh---hhH---HHHHHHHhcc
Confidence 46677766 4999999999999999999999999855 899999999988 99999987 554 5666777777
Q ss_pred cCC
Q 042731 422 NET 424 (481)
Q Consensus 422 ~~~ 424 (481)
+|+
T Consensus 313 ~~~ 315 (321)
T TIGR00661 313 NMK 315 (321)
T ss_pred ccc
Confidence 776
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.81 E-value=4.8e-17 Score=161.32 Aligned_cols=332 Identities=17% Similarity=0.149 Sum_probs=190.9
Q ss_pred CCChHHHHHHHHHHHhCCCCEEEEEeCCcc--hhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 042731 3 QGHIIPFLALARRLEETNKYTITLVNTPLN--LKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQ 80 (481)
Q Consensus 3 ~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (481)
-||+...+.||++|.+ +||+|++++.+.. ....++ .++++..++.+ ++.. . .....+..
T Consensus 12 gG~~~~~~~la~~L~~-~g~ev~vv~~~~~~~~~~~~~-----~g~~~~~~~~~----~~~~------~---~~~~~l~~ 72 (357)
T PRK00726 12 GGHVFPALALAEELKK-RGWEVLYLGTARGMEARLVPK-----AGIEFHFIPSG----GLRR------K---GSLANLKA 72 (357)
T ss_pred hHhhhHHHHHHHHHHh-CCCEEEEEECCCchhhhcccc-----CCCcEEEEecc----CcCC------C---ChHHHHHH
Confidence 3899999999999999 9999999998652 112222 45666666532 1110 0 00111111
Q ss_pred H--HhhhhHHHHHHHHHHhhccCCCCccEEEeCCCC--chHHHHHHHhCCceEEEechhHHHHHHHHHhhhcCCCCCCCC
Q 042731 81 A--SASLEPHFKKLISELVNEQNGQKPLCIITDTFL--GWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHRSTDS 156 (481)
Q Consensus 81 ~--~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~ 156 (481)
. .......+.+++++. +||+|++.... ..+..+++..++|.+......
T Consensus 73 ~~~~~~~~~~~~~~ik~~-------~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~--------------------- 124 (357)
T PRK00726 73 PFKLLKGVLQARKILKRF-------KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA--------------------- 124 (357)
T ss_pred HHHHHHHHHHHHHHHHhc-------CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC---------------------
Confidence 1 122334456777777 99999999632 244556777899998532100
Q ss_pred CccccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHhhcCCCeeeecccc
Q 042731 157 DEFLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRKFGRPVWPIGPVL 236 (481)
Q Consensus 157 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGpl~ 236 (481)
.++ ...++.. ..++.++..+...+. . .-+.++.++|...
T Consensus 125 ----~~~-----------------------~~~r~~~------~~~d~ii~~~~~~~~----~----~~~~~i~vi~n~v 163 (357)
T PRK00726 125 ----VPG-----------------------LANKLLA------RFAKKVATAFPGAFP----E----FFKPKAVVTGNPV 163 (357)
T ss_pred ----Ccc-----------------------HHHHHHH------HHhchheECchhhhh----c----cCCCCEEEECCCC
Confidence 000 0111111 112222222211110 0 1236788888655
Q ss_pred cCccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCC--ceEEEEcCCCCCCCcchh
Q 042731 237 LSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGK--NFIWVVRPPIGFDINSEF 314 (481)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~--~~i~~~~~~~~~~~~~~~ 314 (481)
..... .... ..+.+...+..++|++..|+... ......+.+++..... .+++.+|.+.
T Consensus 164 ~~~~~---------~~~~-~~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g~-------- 223 (357)
T PRK00726 164 REEIL---------ALAA-PPARLAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKGD-------- 223 (357)
T ss_pred ChHhh---------cccc-hhhhccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCCc--------
Confidence 43200 0000 01111222234567766666532 1222223355544332 3455555541
Q ss_pred hhcCCCchhHHHHhccCCCcEEEecccCH-HHhhcccCccceeeccCchhHHHHHHhCCcEEeccc----ccchhhhHHH
Q 042731 315 KANKWLPRGFEERIKCSGQGLVVHKWAPQ-VEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPL----AAEQFYNSKL 389 (481)
Q Consensus 315 ~~~~~l~~~~~~~~~~~~~~~~v~~~ip~-~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~----~~DQ~~na~~ 389 (481)
.+.+.+..+ .+-++.+.+|+.+ .++++.+++ +|+|+|.++++||+++|+|+|++|. ..+|..|+..
T Consensus 224 ------~~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~ 294 (357)
T PRK00726 224 ------LEEVRAAYA-AGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARA 294 (357)
T ss_pred ------HHHHHHHhh-cCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHH
Confidence 122322222 1334778899844 579988886 9999999999999999999999997 3689999999
Q ss_pred HHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHH
Q 042731 390 LEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFLNAAL 467 (481)
Q Consensus 390 v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~ 467 (481)
+.+. |.|..+.. ..++++.|+++|.++++|+ .++++..+-+... .+.++..+.++++++.++
T Consensus 295 i~~~-~~g~~~~~---~~~~~~~l~~~i~~ll~~~----~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 295 LVDA-GAALLIPQ---SDLTPEKLAEKLLELLSDP----ERLEAMAEAARAL--------GKPDAAERLADLIEELAR 356 (357)
T ss_pred HHHC-CCEEEEEc---ccCCHHHHHHHHHHHHcCH----HHHHHHHHHHHhc--------CCcCHHHHHHHHHHHHhh
Confidence 9988 99999987 6778999999999999998 4443333333222 334435666666665543
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.77 E-value=4.1e-16 Score=154.19 Aligned_cols=314 Identities=21% Similarity=0.186 Sum_probs=184.3
Q ss_pred CCChHHHHHHHHHHHhCCCCEEEEEeCCcchh--hhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 042731 3 QGHIIPFLALARRLEETNKYTITLVNTPLNLK--KLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQ 80 (481)
Q Consensus 3 ~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (481)
-||+...+.||+.|.+ .||+|++++...... .... .++++..++.. .+.. . ..+..+..
T Consensus 10 gG~~~~~~~la~~l~~-~G~ev~v~~~~~~~~~~~~~~-----~~~~~~~~~~~----~~~~------~---~~~~~~~~ 70 (350)
T cd03785 10 GGHIFPALALAEELRE-RGAEVLFLGTKRGLEARLVPK-----AGIPLHTIPVG----GLRR------K---GSLKKLKA 70 (350)
T ss_pred hhhhhHHHHHHHHHHh-CCCEEEEEECCCcchhhcccc-----cCCceEEEEec----CcCC------C---ChHHHHHH
Confidence 3999999999999999 999999998753211 1111 35666666632 1110 0 00111111
Q ss_pred H--HhhhhHHHHHHHHHHhhccCCCCccEEEeCCC--CchHHHHHHHhCCceEEEechhHHHHHHHHHhhhcCCCCCCCC
Q 042731 81 A--SASLEPHFKKLISELVNEQNGQKPLCIITDTF--LGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHRSTDS 156 (481)
Q Consensus 81 ~--~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~ 156 (481)
. .......+.+++++. +||+|+++.. ..++..+|...|+|++......
T Consensus 71 ~~~~~~~~~~~~~~i~~~-------~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~--------------------- 122 (350)
T cd03785 71 PFKLLKGVLQARKILKKF-------KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA--------------------- 122 (350)
T ss_pred HHHHHHHHHHHHHHHHhc-------CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC---------------------
Confidence 1 122334556777777 9999998753 2355677888899998532100
Q ss_pred CccccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHhhcCCCeeeecccc
Q 042731 157 DEFLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRKFGRPVWPIGPVL 236 (481)
Q Consensus 157 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGpl~ 236 (481)
.+++ ..++ ....++.++..+-...+. ..+.++..+|...
T Consensus 123 ----~~~~-----------------------~~~~------~~~~~~~vi~~s~~~~~~--------~~~~~~~~i~n~v 161 (350)
T cd03785 123 ----VPGL-----------------------ANRL------LARFADRVALSFPETAKY--------FPKDKAVVTGNPV 161 (350)
T ss_pred ----CccH-----------------------HHHH------HHHhhCEEEEcchhhhhc--------CCCCcEEEECCCC
Confidence 0000 0000 112244455443322221 1135677777654
Q ss_pred cCccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCH-HHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhh
Q 042731 237 LSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAA-SQMMQLAMALEASGKNFIWVVRPPIGFDINSEFK 315 (481)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~ 315 (481)
..... ..... ...+...+.+.+|++..|+...... +.+..++..+...+..+++.++..
T Consensus 162 ~~~~~---------~~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g---------- 221 (350)
T cd03785 162 REEIL---------ALDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG---------- 221 (350)
T ss_pred chHHh---------hhhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc----------
Confidence 33200 00111 2223223335567676676643211 223334444443344455566543
Q ss_pred hcCCCchhHHHHhccCCCcEEEeccc-CHHHhhcccCccceeeccCchhHHHHHHhCCcEEeccc----ccchhhhHHHH
Q 042731 316 ANKWLPRGFEERIKCSGQGLVVHKWA-PQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPL----AAEQFYNSKLL 390 (481)
Q Consensus 316 ~~~~l~~~~~~~~~~~~~~~~v~~~i-p~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~----~~DQ~~na~~v 390 (481)
..+.+.+.++....++.+.+|+ +..++|+.+++ +|+++|.+|++||+++|+|+|++|. ..+|..|+..+
T Consensus 222 ----~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l 295 (350)
T cd03785 222 ----DLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARAL 295 (350)
T ss_pred ----cHHHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHH
Confidence 1123333333113578888998 44578888776 9999999999999999999999986 35788999999
Q ss_pred HHHhcceEEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHH
Q 042731 391 EEEMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKA 434 (481)
Q Consensus 391 ~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a 434 (481)
.+. |.|..+.. ...+.+.|.++|.+++++++..+.|++++
T Consensus 296 ~~~-g~g~~v~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 335 (350)
T cd03785 296 VKA-GAAVLIPQ---EELTPERLAAALLELLSDPERLKAMAEAA 335 (350)
T ss_pred HhC-CCEEEEec---CCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 977 99999987 55689999999999998873333344444
No 34
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.72 E-value=8.3e-16 Score=153.06 Aligned_cols=342 Identities=15% Similarity=0.086 Sum_probs=193.8
Q ss_pred CCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHH
Q 042731 3 QGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQAS 82 (481)
Q Consensus 3 ~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (481)
-||++|. +|+++|++ +|++|+|++... +.+++.+.+ ..+++..++.. ++. ..+..+ ..+
T Consensus 16 sGhi~pa-al~~~l~~-~~~~~~~~g~gg--~~m~~~g~~-~~~~~~~l~v~----G~~-----------~~l~~~-~~~ 74 (385)
T TIGR00215 16 SGDILGA-GLRQQLKE-HYPNARFIGVAG--PRMAAEGCE-VLYSMEELSVM----GLR-----------EVLGRL-GRL 74 (385)
T ss_pred cHHHHHH-HHHHHHHh-cCCCcEEEEEcc--HHHHhCcCc-cccChHHhhhc----cHH-----------HHHHHH-HHH
Confidence 4999999 99999999 999999998542 255553321 12333333321 111 001111 112
Q ss_pred hhhhHHHHHHHHHHhhccCCCCccEEEeCCC-Cch--HHHHHHHhCCceEEEechhHHHHHHHHHhhhcCCCCCCCCCcc
Q 042731 83 ASLEPHFKKLISELVNEQNGQKPLCIITDTF-LGW--CKETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHRSTDSDEF 159 (481)
Q Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~-~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 159 (481)
........+++++. +||+||+-.. ++. .+.+|+.+|||++.+.+ |
T Consensus 75 ~~~~~~~~~~l~~~-------kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~-P------------------------ 122 (385)
T TIGR00215 75 LKIRKEVVQLAKQA-------KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYIS-P------------------------ 122 (385)
T ss_pred HHHHHHHHHHHHhc-------CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeC-C------------------------
Confidence 22333557778888 9999997543 223 23478889999997542 1
Q ss_pred ccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHhhcCCCeeeecccccCc
Q 042731 160 LLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRKFGRPVWPIGPVLLST 239 (481)
Q Consensus 160 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGpl~~~~ 239 (481)
.... |+. .. .+.+.+. ++.++. ++ +.+..++. ..+.+..+||......
T Consensus 123 ---~~wa---w~~-------------~~-~r~l~~~------~d~v~~-~~-~~e~~~~~----~~g~~~~~vGnPv~~~ 170 (385)
T TIGR00215 123 ---QVWA---WRK-------------WR-AKKIEKA------TDFLLA-IL-PFEKAFYQ----KKNVPCRFVGHPLLDA 170 (385)
T ss_pred ---cHhh---cCc-------------ch-HHHHHHH------HhHhhc-cC-CCcHHHHH----hcCCCEEEECCchhhh
Confidence 1000 000 00 1111111 111111 11 12222221 1234667788444322
Q ss_pred cccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHh---c--CCceEEEEcCCCCCCCcchh
Q 042731 240 ESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEA---S--GKNFIWVVRPPIGFDINSEF 314 (481)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~---~--~~~~i~~~~~~~~~~~~~~~ 314 (481)
... .........+.+.-.+.+++|.+..||....-......+++++.. . +.++++......
T Consensus 171 ~~~------~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~-------- 236 (385)
T TIGR00215 171 IPL------YKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK-------- 236 (385)
T ss_pred ccc------cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch--------
Confidence 000 001122333333333346688888888864323334445544443 2 234545443321
Q ss_pred hhcCCCchhHHHHhccC--CCcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEec----cccc-------
Q 042731 315 KANKWLPRGFEERIKCS--GQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGW----PLAA------- 381 (481)
Q Consensus 315 ~~~~~l~~~~~~~~~~~--~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~----P~~~------- 381 (481)
..+.+.+..... ...+....+ +...++..+++ +|+-+|..|+ |++++|+|+|++ |+..
T Consensus 237 -----~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~ 307 (385)
T TIGR00215 237 -----RRLQFEQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLV 307 (385)
T ss_pred -----hHHHHHHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHH
Confidence 111121111100 112222222 23457877776 9999999988 999999999999 7742
Q ss_pred --chhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCC----hhhHHHHHHHHHHHHHHHHHhhcccCCCCch
Q 042731 382 --EQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNET----EKGTDLRNKANEVKVIIKNAVRNETNFKGSS 455 (481)
Q Consensus 382 --DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~ 455 (481)
.|..|+..++.. ++...+.. ...+++.|.+.+.++|+|+ +..+.+++...++.+.+ .++|.+
T Consensus 308 ~~~~~~~~nil~~~-~~~pel~q---~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~ 375 (385)
T TIGR00215 308 KTDYISLPNILANR-LLVPELLQ---EECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRI--------YCNADS 375 (385)
T ss_pred cCCeeeccHHhcCC-ccchhhcC---CCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHh--------cCCCHH
Confidence 377899999988 99998887 7899999999999999998 77778888888888877 455656
Q ss_pred HHHHHHHHH
Q 042731 456 VKAMDQFLN 464 (481)
Q Consensus 456 ~~~~~~~~~ 464 (481)
.++++.+++
T Consensus 376 ~~~a~~i~~ 384 (385)
T TIGR00215 376 ERAAQAVLE 384 (385)
T ss_pred HHHHHHHhh
Confidence 677766654
No 35
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.70 E-value=2.4e-15 Score=142.91 Aligned_cols=254 Identities=19% Similarity=0.156 Sum_probs=153.0
Q ss_pred CCCChHHHHHHHHHHHhCCCCEEEEEeCCcch---hhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHH
Q 042731 2 AQGHIIPFLALARRLEETNKYTITLVNTPLNL---KKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKF 78 (481)
Q Consensus 2 ~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 78 (481)
|.||++++++||++|++ +||+|+|++..... +.+++ .++.+..++.+ .+
T Consensus 13 G~GHv~Rcl~LA~~l~~-~g~~v~f~~~~~~~~~~~~i~~-----~g~~v~~~~~~---~~------------------- 64 (279)
T TIGR03590 13 GLGHVMRCLTLARALHA-QGAEVAFACKPLPGDLIDLLLS-----AGFPVYELPDE---SS------------------- 64 (279)
T ss_pred cccHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHHHHH-----cCCeEEEecCC---Cc-------------------
Confidence 68999999999999999 99999999986433 44555 77777776631 00
Q ss_pred HHHHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHH--HHHHHhCCceEEEechhHHHHHHHHHhhhcCCCCCCCC
Q 042731 79 LQASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCK--ETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHRSTDS 156 (481)
Q Consensus 79 ~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~ 156 (481)
...-...+.+++++. +||+||.|.+..-.. ...+..+.+.+.+--..
T Consensus 65 ---~~~d~~~~~~~l~~~-------~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~--------------------- 113 (279)
T TIGR03590 65 ---RYDDALELINLLEEE-------KFDILIVDHYGLDADWEKLIKEFGRKILVIDDLA--------------------- 113 (279)
T ss_pred ---hhhhHHHHHHHHHhc-------CCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCC---------------------
Confidence 011223356777777 899999998654222 23333455555433200
Q ss_pred CccccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHhhcC-CCeeeecc-
Q 042731 157 DEFLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRKFG-RPVWPIGP- 234 (481)
Q Consensus 157 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~vGp- 234 (481)
. .-..++.+ +|.....+ ...|. ...+ ......||
T Consensus 114 ---------~-------------------------------~~~~~D~v-in~~~~~~--~~~y~-~~~~~~~~~l~G~~ 149 (279)
T TIGR03590 114 ---------D-------------------------------RPHDCDLL-LDQNLGAD--ASDYQ-GLVPANCRLLLGPS 149 (279)
T ss_pred ---------C-------------------------------CCcCCCEE-EeCCCCcC--HhHhc-ccCcCCCeEEecch
Confidence 0 00011222 22211111 00110 0011 23566776
Q ss_pred --cccCccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhc--CCceEEEEcCCCCCCC
Q 042731 235 --VLLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEAS--GKNFIWVVRPPIGFDI 310 (481)
Q Consensus 235 --l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~ 310 (481)
++.+... ...+ .-...+..+.|+|+||...... ....+++++... +.++.+++|...
T Consensus 150 Y~~lr~eF~---------~~~~----~~~~~~~~~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~---- 210 (279)
T TIGR03590 150 YALLREEFY---------QLAT----ANKRRKPLRRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSN---- 210 (279)
T ss_pred HHhhhHHHH---------HhhH----hhhcccccCeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCC----
Confidence 3322200 0000 0001112346899999775322 445566666653 456788887662
Q ss_pred cchhhhcCCCchhHHHHhccCCCcEEEecccCHH-HhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHH
Q 042731 311 NSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQV-EILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKL 389 (481)
Q Consensus 311 ~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~-~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~ 389 (481)
...+.+....+. ..++.+..+++++ ++|..+++ +||+|| +|++|+++.|+|+|++|...+|..||..
T Consensus 211 --------~~~~~l~~~~~~-~~~i~~~~~~~~m~~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 211 --------PNLDELKKFAKE-YPNIILFIDVENMAELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred --------cCHHHHHHHHHh-CCCEEEEeCHHHHHHHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 122344443332 3578899999986 79999886 999999 9999999999999999999999999874
No 36
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.67 E-value=6.1e-14 Score=138.52 Aligned_cols=87 Identities=25% Similarity=0.374 Sum_probs=70.6
Q ss_pred CHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccc---cchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHH
Q 042731 342 PQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLA---AEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIE 418 (481)
Q Consensus 342 p~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~---~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~ 418 (481)
+...+|+.+++ +|+++|.+|++||+++|+|+|++|.. .+|..|+..+.+. |.|..+.. ...+++.|.++|.
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~~G~~~~~---~~~~~~~l~~~i~ 316 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-GAGLVIRQ---KELLPEKLLEALL 316 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-CCEEEEec---ccCCHHHHHHHHH
Confidence 45678888886 99999988999999999999999864 4678899899876 99998877 6678999999999
Q ss_pred HHhcCChhhHHHHHHH
Q 042731 419 LVMNETEKGTDLRNKA 434 (481)
Q Consensus 419 ~vl~~~~~~~~~~~~a 434 (481)
++++|++..+.|.+++
T Consensus 317 ~ll~~~~~~~~~~~~~ 332 (348)
T TIGR01133 317 KLLLDPANLEAMAEAA 332 (348)
T ss_pred HHHcCHHHHHHHHHHH
Confidence 9999883333333333
No 37
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.63 E-value=1.3e-13 Score=127.83 Aligned_cols=329 Identities=17% Similarity=0.164 Sum_probs=189.9
Q ss_pred CCCChHHHHHHHHHHHhC-CCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 042731 2 AQGHIIPFLALARRLEET-NKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQ 80 (481)
Q Consensus 2 ~~GHv~P~l~LA~~L~~~-~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (481)
+.||+-+.+.||+.|.+. .|.+|+++++.......... .+++++.+|.-... ..+.....+...+ ...+.
T Consensus 21 GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~----~gVd~V~LPsl~k~---~~G~~~~~d~~~~-l~e~~- 91 (400)
T COG4671 21 GLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGP----AGVDFVKLPSLIKG---DNGEYGLVDLDGD-LEETK- 91 (400)
T ss_pred cchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCc----ccCceEecCceEec---CCCceeeeecCCC-HHHHH-
Confidence 689999999999999993 39999999987544333221 78999998832111 1111111111111 12222
Q ss_pred HHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhhcCCCCCCCCCccc
Q 042731 81 ASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHRSTDSDEFL 160 (481)
Q Consensus 81 ~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 160 (481)
..-...+...++.+ +||++|.|.+ +.+.. .++ -| ...|+....+..
T Consensus 92 --~~Rs~lil~t~~~f-------kPDi~IVd~~-P~Glr--~EL-~p-----------------tL~yl~~~~t~~---- 137 (400)
T COG4671 92 --KLRSQLILSTAETF-------KPDIFIVDKF-PFGLR--FEL-LP-----------------TLEYLKTTGTRL---- 137 (400)
T ss_pred --HHHHHHHHHHHHhc-------CCCEEEEecc-ccchh--hhh-hH-----------------HHHHHhhcCCcc----
Confidence 22234456777888 9999999964 55521 111 00 001110000000
Q ss_pred cCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhh---h--hhHHHHHHhhcCCCeeeeccc
Q 042731 161 LPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEEL---D--KIGLMYFKRKFGRPVWPIGPV 235 (481)
Q Consensus 161 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~--~~~~~~~~~~~~~~~~~vGpl 235 (481)
.-++ ....+.+.............+.+.+.+ +.+++-..+.+ . .++- ......+.++|.+
T Consensus 138 vL~l-----r~i~D~p~~~~~~w~~~~~~~~I~r~y------D~V~v~GdP~f~d~~~~~~~~----~~i~~k~~ytG~v 202 (400)
T COG4671 138 VLGL-----RSIRDIPQELEADWRRAETVRLINRFY------DLVLVYGDPDFYDPLTEFPFA----PAIRAKMRYTGFV 202 (400)
T ss_pred eeeh-----HhhhhchhhhccchhhhHHHHHHHHhh------eEEEEecCccccChhhcCCcc----HhhhhheeEeEEe
Confidence 0000 001111111111111222333333322 23444433332 1 1111 1123679999998
Q ss_pred ccCc-cccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHh-cCCc--eEEEEcCCCCCCCc
Q 042731 236 LLST-ESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEA-SGKN--FIWVVRPPIGFDIN 311 (481)
Q Consensus 236 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~-~~~~--~i~~~~~~~~~~~~ 311 (481)
..+ +. ...+ +... +++--|+||-|... .-.+.+...+.|-.. .+.+ .++++|+.
T Consensus 203 -q~~~~~--------~~~p-----~~~~-pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~------ 260 (400)
T COG4671 203 -QRSLPH--------LPLP-----PHEA-PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTGPF------ 260 (400)
T ss_pred -eccCcC--------CCCC-----CcCC-CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeCCC------
Confidence 221 00 0000 1111 33446888888764 245666666666554 4555 55666655
Q ss_pred chhhhcCCCchhHHHHhc-cCC--CcEEEecccCH-HHhhcccCccceeeccCchhHHHHHHhCCcEEeccccc---chh
Q 042731 312 SEFKANKWLPRGFEERIK-CSG--QGLVVHKWAPQ-VEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAA---EQF 384 (481)
Q Consensus 312 ~~~~~~~~l~~~~~~~~~-~~~--~~~~v~~~ip~-~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~---DQ~ 384 (481)
+|.....+.. +++ .++.+..|-.+ ..++..++. +|+-||+||++|-|++|||.+++|... +|-
T Consensus 261 --------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQl 330 (400)
T COG4671 261 --------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQL 330 (400)
T ss_pred --------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHH
Confidence 6655444333 113 68888898776 468877665 999999999999999999999999864 899
Q ss_pred hhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCC
Q 042731 385 YNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 385 ~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
.-|.|+++. |+.-.+.+ +.++++.|+++|...++-+
T Consensus 331 iRA~Rl~~L-GL~dvL~p---e~lt~~~La~al~~~l~~P 366 (400)
T COG4671 331 IRAQRLEEL-GLVDVLLP---ENLTPQNLADALKAALARP 366 (400)
T ss_pred HHHHHHHhc-CcceeeCc---ccCChHHHHHHHHhcccCC
Confidence 999999955 99999998 8999999999999999844
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.58 E-value=1.1e-12 Score=131.12 Aligned_cols=146 Identities=20% Similarity=0.308 Sum_probs=100.7
Q ss_pred CCeEEEEEcccccccCHHHHHHHHHHHHhc-CCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCH
Q 042731 265 YTSVLYVSFGSQNTIAASQMMQLAMALEAS-GKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQ 343 (481)
Q Consensus 265 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~ 343 (481)
++++|++..|+.... ..+..+++++... +.+++++.+.+. .+.+.+.+..+..+.++.+.+|+++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~------------~~~~~l~~~~~~~~~~v~~~g~~~~ 266 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNE------------ALKQSLEDLQETNPDALKVFGYVEN 266 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCH------------HHHHHHHHHHhcCCCcEEEEechhh
Confidence 356788877887532 1244566666553 456666665431 0112333332222357888899987
Q ss_pred H-HhhcccCccceeeccCchhHHHHHHhCCcEEec-ccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHh
Q 042731 344 V-EILSHRSVSAFLSHCGWNSVLEALSHGVPIIGW-PLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVM 421 (481)
Q Consensus 344 ~-~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl 421 (481)
. +++..+++ +|+.+|..|+.||+++|+|+|+. |..+.+..|+..+.+. |+|+... +.+.|.++|.+++
T Consensus 267 ~~~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~~-------~~~~l~~~i~~ll 336 (380)
T PRK13609 267 IDELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVIR-------DDEEVFAKTEALL 336 (380)
T ss_pred HHHHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEEC-------CHHHHHHHHHHHH
Confidence 5 78988886 99999988999999999999985 6667778899988877 8887542 4789999999999
Q ss_pred cCChhhHHHHHHH
Q 042731 422 NETEKGTDLRNKA 434 (481)
Q Consensus 422 ~~~~~~~~~~~~a 434 (481)
+|++..+.|++++
T Consensus 337 ~~~~~~~~m~~~~ 349 (380)
T PRK13609 337 QDDMKLLQMKEAM 349 (380)
T ss_pred CCHHHHHHHHHHH
Confidence 9883333344433
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.56 E-value=7.5e-13 Score=132.42 Aligned_cols=91 Identities=15% Similarity=0.142 Sum_probs=62.2
Q ss_pred HHhhcccCccceeeccCchhHHHHHHhCCcEEeccccc--------chhhh-----HHHHHHHhcceEEeeccCCcccCH
Q 042731 344 VEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAA--------EQFYN-----SKLLEEEMGVCVEIARGMSCEVLK 410 (481)
Q Consensus 344 ~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~--------DQ~~n-----a~~v~~~lG~G~~~~~~~~~~~~~ 410 (481)
..+++.+++ +|+.+|.+++ |++++|+|+|++|... +|..| +..+++. +++..+.. ...++
T Consensus 256 ~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~---~~~~~ 328 (380)
T PRK00025 256 REAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGR-ELVPELLQ---EEATP 328 (380)
T ss_pred HHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCC-CcchhhcC---CCCCH
Confidence 568888776 9999999888 9999999999995432 22222 1222222 33333333 56789
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 042731 411 EDLSAKIELVMNETEKGTDLRNKANEVKVII 441 (481)
Q Consensus 411 ~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~ 441 (481)
+.|.++|.++++|++..++++++++++.+.+
T Consensus 329 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 359 (380)
T PRK00025 329 EKLARALLPLLADGARRQALLEGFTELHQQL 359 (380)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999955556666666565554
No 40
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.54 E-value=4.8e-16 Score=136.58 Aligned_cols=137 Identities=21% Similarity=0.301 Sum_probs=98.5
Q ss_pred EEEEEcccccccCH-HHHHHHHHHHHhc--CCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccC-H
Q 042731 268 VLYVSFGSQNTIAA-SQMMQLAMALEAS--GKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAP-Q 343 (481)
Q Consensus 268 ~V~vs~Gs~~~~~~-~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip-~ 343 (481)
+|+|++||.....- +.+..++..+... ...+++++|... ......+....+.++.+.+|++ .
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~--------------~~~~~~~~~~~~~~v~~~~~~~~m 66 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNN--------------YEELKIKVENFNPNVKVFGFVDNM 66 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCE--------------CHHHCCCHCCTTCCCEEECSSSSH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCc--------------HHHHHHHHhccCCcEEEEechhhH
Confidence 48999998864321 2223344444432 578888888662 0111111111125788999999 6
Q ss_pred HHhhcccCccceeeccCchhHHHHHHhCCcEEeccccc----chhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHH
Q 042731 344 VEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAA----EQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIEL 419 (481)
Q Consensus 344 ~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~----DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~ 419 (481)
.+++..+++ +|||||.||++|++.+|+|+|++|... +|..||..+++. |+|..+.. ...+.+.|.+.|.+
T Consensus 67 ~~~m~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~---~~~~~~~L~~~i~~ 140 (167)
T PF04101_consen 67 AELMAAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDE---SELNPEELAEAIEE 140 (167)
T ss_dssp HHHHHHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSEC---CC-SCCCHHHHHHC
T ss_pred HHHHHHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCc---ccCCHHHHHHHHHH
Confidence 789999887 999999999999999999999999988 999999999988 99999988 77789999999999
Q ss_pred HhcCC
Q 042731 420 VMNET 424 (481)
Q Consensus 420 vl~~~ 424 (481)
+++++
T Consensus 141 l~~~~ 145 (167)
T PF04101_consen 141 LLSDP 145 (167)
T ss_dssp HCCCH
T ss_pred HHcCc
Confidence 99887
No 41
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.44 E-value=1.2e-10 Score=116.31 Aligned_cols=137 Identities=20% Similarity=0.185 Sum_probs=88.6
Q ss_pred CeEEEEEcccccccCHHHHHHHHHHHHhc----CCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccC----------
Q 042731 266 TSVLYVSFGSQNTIAASQMMQLAMALEAS----GKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCS---------- 331 (481)
Q Consensus 266 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------- 331 (481)
.++|.+--||........+..+++++... +..|++.+.+.. ..+.+.......
T Consensus 205 ~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~-------------~~~~~~~~l~~~g~~~~~~~~~ 271 (396)
T TIGR03492 205 RFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL-------------SLEKLQAILEDLGWQLEGSSED 271 (396)
T ss_pred CCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC-------------CHHHHHHHHHhcCceecCCccc
Confidence 45788889998643333344555555443 556777774331 011121111100
Q ss_pred ------CCcEEEecccCH-HHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHHHHHH---hcceEEee
Q 042731 332 ------GQGLVVHKWAPQ-VEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEE---MGVCVEIA 401 (481)
Q Consensus 332 ------~~~~~v~~~ip~-~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~---lG~G~~~~ 401 (481)
..++.+..+..+ ..++..+++ +||-+|..| .|+...|+|+|++|....|. |+...++. +|.++.+.
T Consensus 272 ~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~ 347 (396)
T TIGR03492 272 QTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLA 347 (396)
T ss_pred cchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecC
Confidence 123445455444 568888886 999999877 99999999999999877776 98776642 26566554
Q ss_pred ccCCcccCHHHHHHHHHHHhcCC
Q 042731 402 RGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 402 ~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
. .+.+.|.+++.++++|+
T Consensus 348 ~-----~~~~~l~~~l~~ll~d~ 365 (396)
T TIGR03492 348 S-----KNPEQAAQVVRQLLADP 365 (396)
T ss_pred C-----CCHHHHHHHHHHHHcCH
Confidence 3 34599999999999987
No 42
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.42 E-value=2.7e-11 Score=121.39 Aligned_cols=167 Identities=14% Similarity=0.211 Sum_probs=111.2
Q ss_pred CCeEEEEEcccccccCHHHHHHHHHHHHh--cCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccC
Q 042731 265 YTSVLYVSFGSQNTIAASQMMQLAMALEA--SGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAP 342 (481)
Q Consensus 265 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip 342 (481)
.+++|+++.|+.... ..+..+++++.. .+.++++++|.+. .+-+.+.+.... ..++.+.+|++
T Consensus 201 ~~~~ilv~~G~lg~~--k~~~~li~~~~~~~~~~~~vvv~G~~~------------~l~~~l~~~~~~-~~~v~~~G~~~ 265 (391)
T PRK13608 201 DKQTILMSAGAFGVS--KGFDTMITDILAKSANAQVVMICGKSK------------ELKRSLTAKFKS-NENVLILGYTK 265 (391)
T ss_pred CCCEEEEECCCcccc--hhHHHHHHHHHhcCCCceEEEEcCCCH------------HHHHHHHHHhcc-CCCeEEEeccc
Confidence 456888888988621 223444444322 2456666665431 111223322221 35788889997
Q ss_pred HH-HhhcccCccceeeccCchhHHHHHHhCCcEEec-ccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHH
Q 042731 343 QV-EILSHRSVSAFLSHCGWNSVLEALSHGVPIIGW-PLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELV 420 (481)
Q Consensus 343 ~~-~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~v 420 (481)
+. +++..+++ +|+..|..|+.||+++|+|+|++ |..+.|..|+..+.+. |+|+.+. +.+.+.++|.++
T Consensus 266 ~~~~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~-------~~~~l~~~i~~l 335 (391)
T PRK13608 266 HMNEWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD-------TPEEAIKIVASL 335 (391)
T ss_pred hHHHHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC-------CHHHHHHHHHHH
Confidence 75 68988886 99988888999999999999998 7767778899999988 9997653 588899999999
Q ss_pred hcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHh
Q 042731 421 MNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFLNAALI 468 (481)
Q Consensus 421 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 468 (481)
++|++..+.|++|+.+++ ...+..+.++++++.+..
T Consensus 336 l~~~~~~~~m~~~~~~~~------------~~~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 336 TNGNEQLTNMISTMEQDK------------IKYATQTICRDLLDLIGH 371 (391)
T ss_pred hcCHHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHhhh
Confidence 998844444554444432 233355566666655543
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.39 E-value=1.3e-10 Score=116.19 Aligned_cols=147 Identities=14% Similarity=0.101 Sum_probs=96.9
Q ss_pred hhhhhhhcCCCCCeEEEEEcccccccCHHH-HHHHHHHHH-----hcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHH
Q 042731 254 ELCKKWLDTKPYTSVLYVSFGSQNTIAASQ-MMQLAMALE-----ASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEER 327 (481)
Q Consensus 254 ~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~-~~~~~~al~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 327 (481)
..+.+-+.-.+++++|++..|+........ +..+...+. ..+..+++++|.+. .+-+.+...
T Consensus 194 ~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~------------~~~~~L~~~ 261 (382)
T PLN02605 194 DELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNK------------KLQSKLESR 261 (382)
T ss_pred HHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCH------------HHHHHHHhh
Confidence 334444443344667877777765433222 233322221 13345667776441 011222221
Q ss_pred hccCCCcEEEecccCHH-HhhcccCccceeeccCchhHHHHHHhCCcEEecccccchh-hhHHHHHHHhcceEEeeccCC
Q 042731 328 IKCSGQGLVVHKWAPQV-EILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQF-YNSKLLEEEMGVCVEIARGMS 405 (481)
Q Consensus 328 ~~~~~~~~~v~~~ip~~-~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~-~na~~v~~~lG~G~~~~~~~~ 405 (481)
.. ..++.+.+|+++. +++..+++ +|+.+|-+|++||+++|+|+|+.+....|. .|+..+.+. |.|+.+
T Consensus 262 ~~--~~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~----- 331 (382)
T PLN02605 262 DW--KIPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS----- 331 (382)
T ss_pred cc--cCCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec-----
Confidence 11 3467788999875 68888776 999999999999999999999998766675 689888877 999754
Q ss_pred cccCHHHHHHHHHHHhcC-C
Q 042731 406 CEVLKEDLSAKIELVMNE-T 424 (481)
Q Consensus 406 ~~~~~~~l~~~i~~vl~~-~ 424 (481)
-+++.|.++|.+++++ +
T Consensus 332 --~~~~~la~~i~~ll~~~~ 349 (382)
T PLN02605 332 --ESPKEIARIVAEWFGDKS 349 (382)
T ss_pred --CCHHHHHHHHHHHHcCCH
Confidence 2689999999999988 5
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.28 E-value=9.8e-09 Score=101.28 Aligned_cols=142 Identities=12% Similarity=0.141 Sum_probs=90.3
Q ss_pred eEEEEEcccccc-cCHHHHHHHHHHHHhc-CCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHH
Q 042731 267 SVLYVSFGSQNT-IAASQMMQLAMALEAS-GKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQV 344 (481)
Q Consensus 267 ~~V~vs~Gs~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~ 344 (481)
+.+++..|+... ...+.+.+++..+... +..++++ |... ....+. ....++.+.+++++.
T Consensus 197 ~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~-G~~~-------------~~~~~~----~~~~~v~~~g~~~~~ 258 (364)
T cd03814 197 RPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIV-GDGP-------------ARARLE----ARYPNVHFLGFLDGE 258 (364)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEE-eCCc-------------hHHHHh----ccCCcEEEEeccCHH
Confidence 356677787653 2345555555555443 3344433 3321 111111 115688888999875
Q ss_pred H---hhcccCccceeeccC----chhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHH
Q 042731 345 E---ILSHRSVSAFLSHCG----WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKI 417 (481)
Q Consensus 345 ~---ll~~~~v~~~I~HGG----~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i 417 (481)
+ ++..+++ +|+.+. .++++||+++|+|+|+.+..+ +...+... +.|..... -+.+.+.++|
T Consensus 259 ~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~-~~g~~~~~-----~~~~~l~~~i 326 (364)
T cd03814 259 ELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDG-ENGLLVEP-----GDAEAFAAAL 326 (364)
T ss_pred HHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCC-cceEEcCC-----CCHHHHHHHH
Confidence 4 7877776 776654 368999999999999887554 44555555 78877765 3678899999
Q ss_pred HHHhcCChhhHHHHHHHHHHH
Q 042731 418 ELVMNETEKGTDLRNKANEVK 438 (481)
Q Consensus 418 ~~vl~~~~~~~~~~~~a~~~~ 438 (481)
.++++|++..+.+.+++.+..
T Consensus 327 ~~l~~~~~~~~~~~~~~~~~~ 347 (364)
T cd03814 327 AALLADPELRRRMAARARAEA 347 (364)
T ss_pred HHHHcCHHHHHHHHHHHHHHH
Confidence 999999855445555554444
No 45
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.21 E-value=1.5e-09 Score=98.07 Aligned_cols=146 Identities=17% Similarity=0.210 Sum_probs=108.0
Q ss_pred EEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCH-HHh
Q 042731 268 VLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQ-VEI 346 (481)
Q Consensus 268 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~-~~l 346 (481)
-|+|++|... .....-+++..+....+.+-++++... .-+.++..+... ..++........ ..|
T Consensus 160 ~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~------------p~l~~l~k~~~~-~~~i~~~~~~~dma~L 224 (318)
T COG3980 160 DILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSN------------PTLKNLRKRAEK-YPNINLYIDTNDMAEL 224 (318)
T ss_pred eEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCC------------cchhHHHHHHhh-CCCeeeEecchhHHHH
Confidence 5999999873 445667788888888878878887442 122334333332 345555455553 468
Q ss_pred hcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCChh
Q 042731 347 LSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNETEK 426 (481)
Q Consensus 347 l~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~ 426 (481)
+..+++ .|+-|| .|++|++..|+|.+++|+...|---|...+.. |+-..+.. . ++.+...-.+.++.+|.
T Consensus 225 Mke~d~--aI~AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~l-g~~~~l~~---~-l~~~~~~~~~~~i~~d~-- 294 (318)
T COG3980 225 MKEADL--AISAAG-STLYEALLLGVPSLVLPLAENQIATAKEFEAL-GIIKQLGY---H-LKDLAKDYEILQIQKDY-- 294 (318)
T ss_pred HHhcch--heeccc-hHHHHHHHhcCCceEEeeeccHHHHHHHHHhc-CchhhccC---C-CchHHHHHHHHHhhhCH--
Confidence 888775 888888 58999999999999999999999999999966 99888876 3 78888888899999998
Q ss_pred hHHHHHHHHHHHHH
Q 042731 427 GTDLRNKANEVKVI 440 (481)
Q Consensus 427 ~~~~~~~a~~~~~~ 440 (481)
..|++...-.+.
T Consensus 295 --~~rk~l~~~~~~ 306 (318)
T COG3980 295 --ARRKNLSFGSKL 306 (318)
T ss_pred --HHhhhhhhccce
Confidence 666655544443
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.18 E-value=4.2e-08 Score=100.83 Aligned_cols=142 Identities=18% Similarity=0.154 Sum_probs=91.1
Q ss_pred EEEEEcccccccCHHHHHHHHHHHHhc-CCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHH--
Q 042731 268 VLYVSFGSQNTIAASQMMQLAMALEAS-GKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQV-- 344 (481)
Q Consensus 268 ~V~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~-- 344 (481)
.+++..|+... ...+..++++++.. +..++ .+|.+. ..+.++...+ ..++.+.+++++.
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~-ivG~G~-------------~~~~l~~~~~--~~~V~f~G~v~~~ev 325 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLA-FVGDGP-------------YREELEKMFA--GTPTVFTGMLQGDEL 325 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEE-EEeCCh-------------HHHHHHHHhc--cCCeEEeccCCHHHH
Confidence 45566687753 22345566666664 34444 444331 2234444444 5678888999864
Q ss_pred -HhhcccCccceeeccC----chhHHHHHHhCCcEEecccccchhhhHHHHHH---HhcceEEeeccCCcccCHHHHHHH
Q 042731 345 -EILSHRSVSAFLSHCG----WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEE---EMGVCVEIARGMSCEVLKEDLSAK 416 (481)
Q Consensus 345 -~ll~~~~v~~~I~HGG----~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~---~lG~G~~~~~~~~~~~~~~~l~~~ 416 (481)
.++..+++ +|.-.. -.+++||+++|+|+|+.... .....+.+ . +.|..++. -+.+.++++
T Consensus 326 ~~~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~-----~d~~~la~~ 393 (465)
T PLN02871 326 SQAYASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTP-----GDVDDCVEK 393 (465)
T ss_pred HHHHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCC-----CCHHHHHHH
Confidence 47777776 775443 24688999999999987543 22334443 4 67877765 368999999
Q ss_pred HHHHhcCChhhHHHHHHHHHHHH
Q 042731 417 IELVMNETEKGTDLRNKANEVKV 439 (481)
Q Consensus 417 i~~vl~~~~~~~~~~~~a~~~~~ 439 (481)
|.++++|++..+.+.+++++..+
T Consensus 394 i~~ll~~~~~~~~~~~~a~~~~~ 416 (465)
T PLN02871 394 LETLLADPELRERMGAAAREEVE 416 (465)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999998555667777766543
No 47
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.13 E-value=8.6e-11 Score=99.75 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=74.4
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQ 80 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (481)
++.||++|+++||++|++ +||+|++++++.+.+.+++ .|++|..++.+ ..+.. .. .....+..
T Consensus 7 Gt~Ghv~P~lala~~L~~-rGh~V~~~~~~~~~~~v~~-----~Gl~~~~~~~~---~~~~~------~~--~~~~~~~~ 69 (139)
T PF03033_consen 7 GTRGHVYPFLALARALRR-RGHEVRLATPPDFRERVEA-----AGLEFVPIPGD---SRLPR------SL--EPLANLRR 69 (139)
T ss_dssp SSHHHHHHHHHHHHHHHH-TT-EEEEEETGGGHHHHHH-----TT-EEEESSSC---GGGGH------HH--HHHHHHHC
T ss_pred CChhHHHHHHHHHHHHhc-cCCeEEEeecccceecccc-----cCceEEEecCC---cCcCc------cc--chhhhhhh
Confidence 578999999999999999 9999999999999999988 88999987732 00000 00 00011111
Q ss_pred HHhh--hhHHHHHHHHHHhhc-----cCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhH
Q 042731 81 ASAS--LEPHFKKLISELVNE-----QNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGG 136 (481)
Q Consensus 81 ~~~~--~~~~~~~ll~~~~~~-----~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~ 136 (481)
.... ....+.+.+++.... .....+|+++++.....+..+|+++|||++.....|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 70 LARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred HHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 1111 122223333333211 0011467888888777889999999999999877553
No 48
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.08 E-value=2.2e-07 Score=94.42 Aligned_cols=97 Identities=15% Similarity=0.210 Sum_probs=67.6
Q ss_pred EEEecccCH-HHhhcccCccceee----ccCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccC
Q 042731 335 LVVHKWAPQ-VEILSHRSVSAFLS----HCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVL 409 (481)
Q Consensus 335 ~~v~~~ip~-~~ll~~~~v~~~I~----HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~ 409 (481)
+++.+.... ..+++.+++ +|++ -+|-.+++||+++|+|+|+.|...++......+.+. |.++.+. +
T Consensus 304 v~l~~~~~el~~~y~~aDi-~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~~-------d 374 (425)
T PRK05749 304 VLLGDTMGELGLLYAIADI-AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQVE-------D 374 (425)
T ss_pred EEEEecHHHHHHHHHhCCE-EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEEC-------C
Confidence 333343333 357788776 2342 133346999999999999999988888877777656 7665532 4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 042731 410 KEDLSAKIELVMNETEKGTDLRNKANEVKVI 440 (481)
Q Consensus 410 ~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~ 440 (481)
++.|+++|.++++|++..+.|.++++++.+.
T Consensus 375 ~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~ 405 (425)
T PRK05749 375 AEDLAKAVTYLLTDPDARQAYGEAGVAFLKQ 405 (425)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 8999999999999985555666666655443
No 49
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.07 E-value=5e-07 Score=90.68 Aligned_cols=95 Identities=12% Similarity=0.139 Sum_probs=68.9
Q ss_pred CCcEEEecccCHHH---hhcccCccceeecc---C-chhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccC
Q 042731 332 GQGLVVHKWAPQVE---ILSHRSVSAFLSHC---G-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGM 404 (481)
Q Consensus 332 ~~~~~v~~~ip~~~---ll~~~~v~~~I~HG---G-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 404 (481)
..++.+.+|+|+.+ ++..+++ +|+.+ | -.+++||+++|+|+|+.... .....+++. +.|...+.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~-~~g~~~~~-- 352 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDG-VTGLLVDP-- 352 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCC-CCeEEeCC--
Confidence 36788999999865 5777776 66442 2 35899999999999987543 344556644 68887765
Q ss_pred CcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 042731 405 SCEVLKEDLSAKIELVMNETEKGTDLRNKANEVK 438 (481)
Q Consensus 405 ~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~ 438 (481)
-+.+.++++|.+++++++..+.+.++|++..
T Consensus 353 ---~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~ 383 (398)
T cd03800 353 ---RDPEALAAALRRLLTDPALRRRLSRAGLRRA 383 (398)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3689999999999998855555666665543
No 50
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.06 E-value=2.3e-07 Score=91.65 Aligned_cols=149 Identities=13% Similarity=0.158 Sum_probs=89.6
Q ss_pred CeEEEEEccccccc-CHHHHHHHHHHHHhc--CCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhc--cCCCcEEEecc
Q 042731 266 TSVLYVSFGSQNTI-AASQMMQLAMALEAS--GKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIK--CSGQGLVVHKW 340 (481)
Q Consensus 266 ~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~v~~~ 340 (481)
++.+++..|+.... ..+.+..++..+... +..+++.-+.. ..+.+.+..+ ....++...++
T Consensus 201 ~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~--------------~~~~~~~~~~~~~~~~~v~~~g~ 266 (374)
T cd03817 201 DEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGP--------------EREELEELARELGLADRVIFTGF 266 (374)
T ss_pred CCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCc--------------hHHHHHHHHHHcCCCCcEEEecc
Confidence 34566777876542 345555555555543 33444433221 1122222211 11468888899
Q ss_pred cCHHH---hhcccCccceeecc----CchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHH
Q 042731 341 APQVE---ILSHRSVSAFLSHC----GWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDL 413 (481)
Q Consensus 341 ip~~~---ll~~~~v~~~I~HG----G~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l 413 (481)
+|+.+ ++..+++ +|..+ .-.++.||+++|+|+|+... ...+..+... +.|..++. .. . .+
T Consensus 267 ~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~---~~--~-~~ 333 (374)
T cd03817 267 VPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPP---GD--E-AL 333 (374)
T ss_pred CChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCC---CC--H-HH
Confidence 98754 6778776 66433 23689999999999998754 3445555544 67777765 22 2 89
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 042731 414 SAKIELVMNETEKGTDLRNKANEVKVII 441 (481)
Q Consensus 414 ~~~i~~vl~~~~~~~~~~~~a~~~~~~~ 441 (481)
.++|.+++++++..+.+.+++++.....
T Consensus 334 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 361 (374)
T cd03817 334 AEALLRLLQDPELRRRLSKNAEESAEKF 361 (374)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 9999999999854445666666555543
No 51
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.05 E-value=6.1e-07 Score=88.17 Aligned_cols=142 Identities=15% Similarity=0.143 Sum_probs=85.3
Q ss_pred CeEEEEEccccccc-CHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHH
Q 042731 266 TSVLYVSFGSQNTI-AASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQV 344 (481)
Q Consensus 266 ~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~ 344 (481)
++.+++..|+.... ..+.+.+.+..+...+..++++ |... ......... ....++.+.+++++.
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~-G~~~-------------~~~~~~~~~-~~~~~v~~~g~~~~~ 254 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIV-GNGL-------------ELEEESYEL-EGDPRVEFLGAYPQE 254 (359)
T ss_pred CceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEE-cCch-------------hhhHHHHhh-cCCCeEEEeCCCCHH
Confidence 44677777887542 2344444444444334455444 3331 000110000 114688888999765
Q ss_pred H---hhcccCccceee----ccCc-hhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHH
Q 042731 345 E---ILSHRSVSAFLS----HCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAK 416 (481)
Q Consensus 345 ~---ll~~~~v~~~I~----HGG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~ 416 (481)
+ ++..+++ +|+ ..|. .++.||+++|+|+|+.+.. .....+... +.|..+.. -+.+.+.++
T Consensus 255 ~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~-----~d~~~l~~~ 322 (359)
T cd03823 255 EIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRDG-VNGLLFPP-----GDAEDLAAA 322 (359)
T ss_pred HHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcCC-CcEEEECC-----CCHHHHHHH
Confidence 4 6777776 663 2344 4789999999999987543 445555544 57877765 358999999
Q ss_pred HHHHhcCChhhHHHHHHH
Q 042731 417 IELVMNETEKGTDLRNKA 434 (481)
Q Consensus 417 i~~vl~~~~~~~~~~~~a 434 (481)
|.++++|++..+.+++++
T Consensus 323 i~~l~~~~~~~~~~~~~~ 340 (359)
T cd03823 323 LERLIDDPDLLERLRAGI 340 (359)
T ss_pred HHHHHhChHHHHHHHHhH
Confidence 999999884444444444
No 52
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.03 E-value=3.7e-07 Score=90.57 Aligned_cols=148 Identities=15% Similarity=0.162 Sum_probs=90.4
Q ss_pred CeEEEEEccccccc-CHHHHHHHHHHHHhc-CCceEEEEcCCCCCCCcchhhhcCCCchhHHHHh-ccCCCcEEEecccC
Q 042731 266 TSVLYVSFGSQNTI-AASQMMQLAMALEAS-GKNFIWVVRPPIGFDINSEFKANKWLPRGFEERI-KCSGQGLVVHKWAP 342 (481)
Q Consensus 266 ~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~v~~~ip 342 (481)
++.+++..|+.... ..+.+...+..+... +..+++ +|.+. ..+.+.+.. .....++.+.++++
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i-~G~~~-------------~~~~~~~~~~~~~~~~v~~~g~~~ 284 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLI-VGDGP-------------EKEELKELAKALGLDNVTFLGRVP 284 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEE-eCCcc-------------cHHHHHHHHHHcCCCcEEEeCCCC
Confidence 44677778887542 344455555555444 344433 34331 112222210 11146788889998
Q ss_pred HHH---hhcccCccceeeccC---------chhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCH
Q 042731 343 QVE---ILSHRSVSAFLSHCG---------WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLK 410 (481)
Q Consensus 343 ~~~---ll~~~~v~~~I~HGG---------~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~ 410 (481)
+.+ ++..+++ +|.... -+++.||+++|+|+|+.+..+.+.. +... +.|..++. -+.
T Consensus 285 ~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~----~~~~-~~g~~~~~-----~~~ 352 (394)
T cd03794 285 KEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAEL----VEEA-GAGLVVPP-----GDP 352 (394)
T ss_pred hHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhh----hccC-CcceEeCC-----CCH
Confidence 654 6777776 664332 2347999999999999987665443 2223 56777665 378
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 042731 411 EDLSAKIELVMNETEKGTDLRNKANEVKV 439 (481)
Q Consensus 411 ~~l~~~i~~vl~~~~~~~~~~~~a~~~~~ 439 (481)
+.++++|.++++|++..+.+++++++...
T Consensus 353 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T cd03794 353 EALAAAILELLDDPEERAEMGENGRRYVE 381 (394)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 99999999999988555556666655544
No 53
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.00 E-value=1.1e-06 Score=88.94 Aligned_cols=92 Identities=16% Similarity=0.287 Sum_probs=64.1
Q ss_pred CcEEEe-cccCHH---HhhcccCccceee-c---cC---chhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEee
Q 042731 333 QGLVVH-KWAPQV---EILSHRSVSAFLS-H---CG---WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIA 401 (481)
Q Consensus 333 ~~~~v~-~~ip~~---~ll~~~~v~~~I~-H---GG---~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~ 401 (481)
++++.. +|+|.. .+|..+++ +|. + -| -++++||+++|+|+|+... ......+++. +.|..+.
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~-~~G~lv~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKHG-ENGLVFG 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCC-CCEEEEC
Confidence 455554 588864 46778787 553 1 12 2479999999999999643 3444556645 6787762
Q ss_pred ccCCcccCHHHHHHHHHHHhcC---ChhhHHHHHHHHHHH
Q 042731 402 RGMSCEVLKEDLSAKIELVMNE---TEKGTDLRNKANEVK 438 (481)
Q Consensus 402 ~~~~~~~~~~~l~~~i~~vl~~---~~~~~~~~~~a~~~~ 438 (481)
+.++|+++|.++++| ++..+.|++++++..
T Consensus 367 -------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 367 -------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred -------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 589999999999998 656666777776655
No 54
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.96 E-value=1.7e-06 Score=84.74 Aligned_cols=323 Identities=15% Similarity=0.115 Sum_probs=166.1
Q ss_pred CCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHH
Q 042731 3 QGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQAS 82 (481)
Q Consensus 3 ~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (481)
-|+...+..|++.|.+ .||+|++++............ .... .. .. .... ........
T Consensus 14 ~G~~~~~~~l~~~L~~-~g~~v~i~~~~~~~~~~~~~~---~~~~----~~----~~----------~~~~-~~~~~~~~ 70 (374)
T cd03801 14 GGAERHVLELARALAA-RGHEVTVLTPGDGGLPDEEEV---GGIV----VV----RP----------PPLL-RVRRLLLL 70 (374)
T ss_pred CcHhHHHHHHHHHHHh-cCceEEEEecCCCCCCceeee---cCcc----ee----cC----------Cccc-ccchhHHH
Confidence 5888999999999999 899999999864432221100 0000 00 00 0000 01111111
Q ss_pred hhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHH--HHHHHhCCceEEEechhHHHHHHHHHhhhcCCCCCCCCCccc
Q 042731 83 ASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCK--ETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHRSTDSDEFL 160 (481)
Q Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 160 (481)
......+..+++.. +||+|++........ .++...++|.+.........
T Consensus 71 ~~~~~~~~~~~~~~-------~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~---------------------- 121 (374)
T cd03801 71 LLLALRLRRLLRRE-------RFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFG---------------------- 121 (374)
T ss_pred HHHHHHHHHHhhhc-------CCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhh----------------------
Confidence 22333456677777 899999986655333 47778899998766532110
Q ss_pred cCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEEEccchhhhhhHHHHHHhhcC---CCeeeeccccc
Q 042731 161 LPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGILVNTVEELDKIGLMYFKRKFG---RPVWPIGPVLL 237 (481)
Q Consensus 161 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~vGpl~~ 237 (481)
... .. ..................++.+++.+....+ .+...+. .++..+.....
T Consensus 122 ---~~~---~~------------~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~-----~~~~~~~~~~~~~~~i~~~~~ 178 (374)
T cd03801 122 ---RPG---NE------------LGLLLKLARALERRALRRADRIIAVSEATRE-----ELRELGGVPPEKITVIPNGVD 178 (374)
T ss_pred ---ccc---cc------------hhHHHHHHHHHHHHHHHhCCEEEEecHHHHH-----HHHhcCCCCCCcEEEecCccc
Confidence 000 00 0000011111122345566777666653332 2222222 24555554332
Q ss_pred CccccccccccCCCChhhhhhhhcCCCCCeEEEEEccccccc-CHHHHHHHHHHHHhc--CCceEEEEcCCCCCCCcchh
Q 042731 238 STESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTI-AASQMMQLAMALEAS--GKNFIWVVRPPIGFDINSEF 314 (481)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~ 314 (481)
.... ............. ..+..+++.+|+.... ..+.+...+..+... +..++ ++|...
T Consensus 179 ~~~~--------~~~~~~~~~~~~~-~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~-i~G~~~-------- 240 (374)
T cd03801 179 TERF--------RPAPRAARRRLGI-PEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLV-IVGDGP-------- 240 (374)
T ss_pred cccc--------CccchHHHhhcCC-cCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEE-EEeCcH--------
Confidence 2200 0000111111111 1234567777877532 233333444444333 23333 333221
Q ss_pred hhcCCCchhHHHHh--ccCCCcEEEecccCHH---HhhcccCccceeec----cCchhHHHHHHhCCcEEecccccchhh
Q 042731 315 KANKWLPRGFEERI--KCSGQGLVVHKWAPQV---EILSHRSVSAFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFY 385 (481)
Q Consensus 315 ~~~~~l~~~~~~~~--~~~~~~~~v~~~ip~~---~ll~~~~v~~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~ 385 (481)
....+.... .....++.+.+++++. .++..+++ +|+- |.-++++||+++|+|+|+.+. +.
T Consensus 241 -----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~ 309 (374)
T cd03801 241 -----LREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GG 309 (374)
T ss_pred -----HHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CC
Confidence 111222111 0115688888999754 47777776 6632 445789999999999998765 34
Q ss_pred hHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHH
Q 042731 386 NSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKAN 435 (481)
Q Consensus 386 na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~ 435 (481)
....+.+. +.|...+. .+.+.+.++|.+++++++..+.+.++++
T Consensus 310 ~~~~~~~~-~~g~~~~~-----~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 353 (374)
T cd03801 310 IPEVVEDG-ETGLLVPP-----GDPEALAEAILRLLDDPELRRRLGEAAR 353 (374)
T ss_pred hhHHhcCC-cceEEeCC-----CCHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 45555545 77777765 3589999999999999844334444443
No 55
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.94 E-value=3.3e-06 Score=81.72 Aligned_cols=320 Identities=18% Similarity=0.225 Sum_probs=184.9
Q ss_pred CCCChHHHHHHHHHHHhCC--CCEEEEEe-CCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHH
Q 042731 2 AQGHIIPFLALARRLEETN--KYTITLVN-TPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKF 78 (481)
Q Consensus 2 ~~GHv~P~l~LA~~L~~~~--Gh~Vt~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 78 (481)
+.|-++-.++|.++|++ + ++.|++-+ |+-..+.+.+... ..+...-+|++
T Consensus 58 SVGEv~a~~pLv~~l~~-~~P~~~ilvTt~T~Tg~e~a~~~~~--~~v~h~YlP~D------------------------ 110 (419)
T COG1519 58 SVGEVLAALPLVRALRE-RFPDLRILVTTMTPTGAERAAALFG--DSVIHQYLPLD------------------------ 110 (419)
T ss_pred chhHHHHHHHHHHHHHH-hCCCCCEEEEecCccHHHHHHHHcC--CCeEEEecCcC------------------------
Confidence 45788999999999999 6 88988888 5666666666544 44555556642
Q ss_pred HHHHhhhhHHHHHHHHHHhhccCCCCccEEEe-CC-CCchHHHHHHHhCCceEEEechhHHHHHHHHHhhhcCCCCCCCC
Q 042731 79 LQASASLEPHFKKLISELVNEQNGQKPLCIIT-DT-FLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHRSTDS 156 (481)
Q Consensus 79 ~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~-D~-~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~ 156 (481)
....+..+++.+ +||++|. +. +++....-+++.|||.+.+..=-+
T Consensus 111 ------~~~~v~rFl~~~-------~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS-------------------- 157 (419)
T COG1519 111 ------LPIAVRRFLRKW-------RPKLLIIMETELWPNLINELKRRGIPLVLVNARLS-------------------- 157 (419)
T ss_pred ------chHHHHHHHHhc-------CCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeec--------------------
Confidence 223457888999 9987664 43 333445777789999998653100
Q ss_pred CccccCCCCCCCccccCccChhhhcCCCCChHHHHHHHHHH-hhccCceEEEccchhhhhhHHHHHHhhcCCCeeeeccc
Q 042731 157 DEFLLPDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLL-LWKDADGILVNTVEELDKIGLMYFKRKFGRPVWPIGPV 235 (481)
Q Consensus 157 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGpl 235 (481)
.+-. .-+..+....+ .+...+.++.-+-.+.+ .+.+---+++..+|-+
T Consensus 158 ---------------~rS~-----------~~y~k~~~~~~~~~~~i~li~aQse~D~~-----Rf~~LGa~~v~v~GNl 206 (419)
T COG1519 158 ---------------DRSF-----------ARYAKLKFLARLLFKNIDLILAQSEEDAQ-----RFRSLGAKPVVVTGNL 206 (419)
T ss_pred ---------------hhhh-----------HHHHHHHHHHHHHHHhcceeeecCHHHHH-----HHHhcCCcceEEecce
Confidence 0000 00111111112 22333444433332221 1122112446777755
Q ss_pred ccCccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCC--ceEEEEcCCCCCCCcch
Q 042731 236 LLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGK--NFIWVVRPPIGFDINSE 313 (481)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~--~~i~~~~~~~~~~~~~~ 313 (481)
=....... .....-..++..++.. + .+.|..+| .....+.+.+...++.+... .+||+=+-..
T Consensus 207 Kfd~~~~~----~~~~~~~~~r~~l~~~--r-~v~iaaST-H~GEeei~l~~~~~l~~~~~~~llIlVPRHpE------- 271 (419)
T COG1519 207 KFDIEPPP----QLAAELAALRRQLGGH--R-PVWVAAST-HEGEEEIILDAHQALKKQFPNLLLILVPRHPE------- 271 (419)
T ss_pred eecCCCCh----hhHHHHHHHHHhcCCC--C-ceEEEecC-CCchHHHHHHHHHHHHhhCCCceEEEecCChh-------
Confidence 32220000 0000112344444442 2 35666555 33445556667777766543 3344322110
Q ss_pred hhhcCCCchhHHHHhc---------------cCCCcEEEecccCH-HHhhcccCc----cceeeccCchhHHHHHHhCCc
Q 042731 314 FKANKWLPRGFEERIK---------------CSGQGLVVHKWAPQ-VEILSHRSV----SAFLSHCGWNSVLEALSHGVP 373 (481)
Q Consensus 314 ~~~~~~l~~~~~~~~~---------------~~~~~~~v~~~ip~-~~ll~~~~v----~~~I~HGG~gt~~eal~~GvP 373 (481)
.+ +.+.+..+ ....++++.+-+-- ..+++-+++ +.++-+||+| ..|++++|+|
T Consensus 272 -----Rf-~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~p 344 (419)
T COG1519 272 -----RF-KAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTP 344 (419)
T ss_pred -----hH-HHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCC
Confidence 00 00111110 01335555555444 345666665 3356699998 7799999999
Q ss_pred EEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 042731 374 IIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIK 442 (481)
Q Consensus 374 ~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~ 442 (481)
+|.-|+...|..-+.++.+. |.|+.++. ++.+.+++..+++|++..+.|.+++.++-...+
T Consensus 345 vi~Gp~~~Nf~ei~~~l~~~-ga~~~v~~-------~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~ 405 (419)
T COG1519 345 VIFGPYTFNFSDIAERLLQA-GAGLQVED-------ADLLAKAVELLLADEDKREAYGRAGLEFLAQNR 405 (419)
T ss_pred EEeCCccccHHHHHHHHHhc-CCeEEECC-------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999 99999964 888999999998888666667777777666654
No 56
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.94 E-value=2.4e-06 Score=85.96 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=67.1
Q ss_pred CCcEEEecccCHHH---hhcccCccceee---ccCc-hhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccC
Q 042731 332 GQGLVVHKWAPQVE---ILSHRSVSAFLS---HCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGM 404 (481)
Q Consensus 332 ~~~~~v~~~ip~~~---ll~~~~v~~~I~---HGG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 404 (481)
..++.+.+++|+.+ +|..+++ +|. +.|. .++.||+++|+|+|+... ......+... ..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~~-~~G~lv~~-- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITDG-ENGLLVDF-- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhcccC-CceEEcCC--
Confidence 45788889999764 6677776 553 2233 479999999999998643 3444555533 46776654
Q ss_pred CcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 042731 405 SCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKV 439 (481)
Q Consensus 405 ~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~ 439 (481)
-+++.++++|.++++|++..+.+.+++++..+
T Consensus 351 ---~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~ 382 (396)
T cd03818 351 ---FDPDALAAAVIELLDDPARRARLRRAARRTAL 382 (396)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 36899999999999998555556666655443
No 57
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.91 E-value=2.6e-06 Score=82.99 Aligned_cols=96 Identities=18% Similarity=0.240 Sum_probs=64.8
Q ss_pred CcEEEecccCH-HHhhcccCccceeeccC----chhHHHHHHhCCcEEecccccchhhhHHHHHHHhc-ceEEeeccCCc
Q 042731 333 QGLVVHKWAPQ-VEILSHRSVSAFLSHCG----WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMG-VCVEIARGMSC 406 (481)
Q Consensus 333 ~~~~v~~~ip~-~~ll~~~~v~~~I~HGG----~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG-~G~~~~~~~~~ 406 (481)
.++.+.++... ..++..+++ +|.... -++++||+++|+|+|+.+....+.. +... | .|..++.
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~----~~~~-~~~g~~~~~---- 303 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSE----IIED-GVNGLLVPN---- 303 (348)
T ss_pred CeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchHh----hhcc-CcceEEeCC----
Confidence 45666666333 468888776 665542 3689999999999998765443322 3334 5 7777765
Q ss_pred ccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 042731 407 EVLKEDLSAKIELVMNETEKGTDLRNKANEVKVI 440 (481)
Q Consensus 407 ~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~ 440 (481)
.+.+.++++|.++++|++..+.++++++++.+.
T Consensus 304 -~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~ 336 (348)
T cd03820 304 -GDVEALAEALLRLMEDEELRKRMGANARESAER 336 (348)
T ss_pred -CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 357999999999999985555566666554443
No 58
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.90 E-value=2.8e-06 Score=83.11 Aligned_cols=148 Identities=14% Similarity=0.123 Sum_probs=87.4
Q ss_pred CeEEEEEccccccc-CHHHHHHHHHHHHhc--CCceEEEEcCCCCCCCcchhhhcCCCchhH-HHHhccCCCcEEEeccc
Q 042731 266 TSVLYVSFGSQNTI-AASQMMQLAMALEAS--GKNFIWVVRPPIGFDINSEFKANKWLPRGF-EERIKCSGQGLVVHKWA 341 (481)
Q Consensus 266 ~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~v~~~i 341 (481)
++.+++..|+.... ..+.+.+.+..+... +..++++-.... ....... ..... ...++.+.++.
T Consensus 187 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~-----------~~~~~~~~~~~~~-~~~~v~~~g~~ 254 (359)
T cd03808 187 DDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDE-----------ENPAAILEIEKLG-LEGRVEFLGFR 254 (359)
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCc-----------chhhHHHHHHhcC-CcceEEEeecc
Confidence 44677888887543 345555555555542 334444333221 0000000 01111 13567777765
Q ss_pred CH-HHhhcccCccceeeccC----chhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHH
Q 042731 342 PQ-VEILSHRSVSAFLSHCG----WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAK 416 (481)
Q Consensus 342 p~-~~ll~~~~v~~~I~HGG----~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~ 416 (481)
.+ ..++..+++ +|..+. -++++||+++|+|+|+.+..+ ....+.+. +.|..++. -+.+.+.++
T Consensus 255 ~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~~~-~~g~~~~~-----~~~~~~~~~ 322 (359)
T cd03808 255 DDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVIDG-VNGFLVPP-----GDAEALADA 322 (359)
T ss_pred ccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhhcC-cceEEECC-----CCHHHHHHH
Confidence 44 468888776 665433 468999999999999865443 34445534 67777654 368999999
Q ss_pred HHHHhcCChhhHHHHHHHHHH
Q 042731 417 IELVMNETEKGTDLRNKANEV 437 (481)
Q Consensus 417 i~~vl~~~~~~~~~~~~a~~~ 437 (481)
|.++++|++..+.+.+++.+.
T Consensus 323 i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03808 323 IERLIEDPELRARMGQAARKR 343 (359)
T ss_pred HHHHHhCHHHHHHHHHHHHHH
Confidence 999999985544555555554
No 59
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.87 E-value=6e-06 Score=81.42 Aligned_cols=153 Identities=12% Similarity=0.109 Sum_probs=88.0
Q ss_pred CeEEEEEccccccc-CHHHHHHHHHHHHhcC--CceEEEEcCCCCCCCcchhhhcCCCchhHHHHhc--cCCCcEEEecc
Q 042731 266 TSVLYVSFGSQNTI-AASQMMQLAMALEASG--KNFIWVVRPPIGFDINSEFKANKWLPRGFEERIK--CSGQGLVVHKW 340 (481)
Q Consensus 266 ~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~v~~~ 340 (481)
+..+++..|..... ..+.+.+.+..+...+ ..+++ +|.... . ..+...+....+ ....++.+.++
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~i-vG~~~~-----~----~~~~~~~~~~~~~~~~~~~v~~~g~ 253 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLI-VGDAQG-----R----RFYYAELLELIKRLGLQDRVTFVGH 253 (355)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEE-EECCcc-----c----chHHHHHHHHHHHcCCcceEEEcCC
Confidence 34566777776543 3555666666666643 33333 333210 0 001111111111 01356788888
Q ss_pred cCH-HHhhcccCccceeec----cCc-hhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHH
Q 042731 341 APQ-VEILSHRSVSAFLSH----CGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLS 414 (481)
Q Consensus 341 ip~-~~ll~~~~v~~~I~H----GG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~ 414 (481)
.+. ..++..+++ +|+- -|+ ++++||+++|+|+|+.... .....+.+. +.|..++. -+.+.+.
T Consensus 254 ~~~~~~~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~-----~~~~~l~ 321 (355)
T cd03819 254 CSDMPAAYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETVRPG-ETGLLVPP-----GDAEALA 321 (355)
T ss_pred cccHHHHHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHHhCC-CceEEeCC-----CCHHHHH
Confidence 554 468888887 4432 233 5899999999999987432 334445433 47777764 4789999
Q ss_pred HHHHHHhc-CChhhHHHHHHHHHHHHH
Q 042731 415 AKIELVMN-ETEKGTDLRNKANEVKVI 440 (481)
Q Consensus 415 ~~i~~vl~-~~~~~~~~~~~a~~~~~~ 440 (481)
++|..++. ++++.+.++++|++..+.
T Consensus 322 ~~i~~~~~~~~~~~~~~~~~a~~~~~~ 348 (355)
T cd03819 322 QALDQILSLLPEGRAKMFAKARMCVET 348 (355)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 99965554 664555666666666543
No 60
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.86 E-value=1.4e-05 Score=80.91 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=66.7
Q ss_pred CcEEEecccCHH---HhhcccCccceeeccCc------hhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeecc
Q 042731 333 QGLVVHKWAPQV---EILSHRSVSAFLSHCGW------NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARG 403 (481)
Q Consensus 333 ~~~~v~~~ip~~---~ll~~~~v~~~I~HGG~------gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~ 403 (481)
.++.+.+|+|+. .++..+++..+.+..+. +.+.|++++|+|+|+....+.. ....+. +.|+.++.
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~- 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEP- 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCC-
Confidence 478888999875 47888887444444332 2468999999999998654311 112222 67777765
Q ss_pred CCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 042731 404 MSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKV 439 (481)
Q Consensus 404 ~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~ 439 (481)
-+.+.++++|.++++|++..+.+++++++..+
T Consensus 358 ----~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~ 389 (412)
T PRK10307 358 ----ESVEALVAAIAALARQALLRPKLGTVAREYAE 389 (412)
T ss_pred ----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 36899999999999988556667777766544
No 61
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.86 E-value=1.1e-05 Score=80.05 Aligned_cols=93 Identities=15% Similarity=0.113 Sum_probs=65.5
Q ss_pred CcEEEecccCH-HHhhcccCccceeec---cC-chhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcc
Q 042731 333 QGLVVHKWAPQ-VEILSHRSVSAFLSH---CG-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCE 407 (481)
Q Consensus 333 ~~~~v~~~ip~-~~ll~~~~v~~~I~H---GG-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~ 407 (481)
.++.+.++.++ ..++..+++ +|.- .| -.++.||+++|+|+|+... ......+.+. ..|..++.
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~~-~~G~~~~~----- 320 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKHG-ETGFLVDV----- 320 (371)
T ss_pred ceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcCC-CceEEcCC-----
Confidence 46777788776 357888776 5532 23 3589999999999998644 3455555543 46766654
Q ss_pred cCHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 042731 408 VLKEDLSAKIELVMNETEKGTDLRNKANEV 437 (481)
Q Consensus 408 ~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~ 437 (481)
-+.++++++|.+++++++..+++++++++.
T Consensus 321 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 321 GDVEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 368999999999999885555666666665
No 62
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.83 E-value=2.7e-05 Score=76.46 Aligned_cols=135 Identities=12% Similarity=0.074 Sum_probs=81.3
Q ss_pred CeEEEEEccccccc-CHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhc--cCCCcEEEecccC
Q 042731 266 TSVLYVSFGSQNTI-AASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIK--CSGQGLVVHKWAP 342 (481)
Q Consensus 266 ~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~v~~~ip 342 (481)
+..+++..|+.... ..+.+...+..+...+.++.+.+.+.. .....+....+ ....++.+.++++
T Consensus 201 ~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~------------~~~~~~~~~~~~~~~~~~v~~~g~~~ 268 (377)
T cd03798 201 DKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDG------------PLREALEALAAELGLEDRVTFLGAVP 268 (377)
T ss_pred CceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCC------------cchHHHHHHHHhcCCcceEEEeCCCC
Confidence 34577777887542 234444445555443334444333221 01112222111 1146788889999
Q ss_pred HH---HhhcccCccceeec----cCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHH
Q 042731 343 QV---EILSHRSVSAFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSA 415 (481)
Q Consensus 343 ~~---~ll~~~~v~~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ 415 (481)
+. .++..+++ +|.. |.-++++||+++|+|+|+.+.. .....+... +.|...+. -+.+.+.+
T Consensus 269 ~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~-~~g~~~~~-----~~~~~l~~ 336 (377)
T cd03798 269 HEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITDG-ENGLLVPP-----GDPEALAE 336 (377)
T ss_pred HHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcCC-cceeEECC-----CCHHHHHH
Confidence 75 46777776 5522 3457899999999999986543 334445544 56666654 47899999
Q ss_pred HHHHHhcCC
Q 042731 416 KIELVMNET 424 (481)
Q Consensus 416 ~i~~vl~~~ 424 (481)
+|.++++++
T Consensus 337 ~i~~~~~~~ 345 (377)
T cd03798 337 AILRLLADP 345 (377)
T ss_pred HHHHHhcCc
Confidence 999999998
No 63
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.81 E-value=4e-06 Score=82.65 Aligned_cols=148 Identities=17% Similarity=0.120 Sum_probs=90.6
Q ss_pred eEEEEEcccccccCHHHHHHHHHHHHhcC-CceEEEEcCCCCCCCcchhhhcCCCchhHHHHh--ccCCCcEEEecccCH
Q 042731 267 SVLYVSFGSQNTIAASQMMQLAMALEASG-KNFIWVVRPPIGFDINSEFKANKWLPRGFEERI--KCSGQGLVVHKWAPQ 343 (481)
Q Consensus 267 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~v~~~ip~ 343 (481)
..+++..|+.... ..+..+++++.... ..++++-.+. ....+.... .....++.+.+|+|+
T Consensus 191 ~~~i~~~G~~~~~--K~~~~li~a~~~l~~~~l~i~G~g~--------------~~~~~~~~~~~~~~~~~V~~~g~v~~ 254 (357)
T cd03795 191 RPFFLFVGRLVYY--KGLDVLLEAAAALPDAPLVIVGEGP--------------LEAELEALAAALGLLDRVRFLGRLDD 254 (357)
T ss_pred CcEEEEecccccc--cCHHHHHHHHHhccCcEEEEEeCCh--------------hHHHHHHHHHhcCCcceEEEcCCCCH
Confidence 3566777877532 23444566666555 4444433221 112222211 111468999999997
Q ss_pred H---HhhcccCccceee---ccCc-hhHHHHHHhCCcEEecccccchhhhHHHHHH-HhcceEEeeccCCcccCHHHHHH
Q 042731 344 V---EILSHRSVSAFLS---HCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEE-EMGVCVEIARGMSCEVLKEDLSA 415 (481)
Q Consensus 344 ~---~ll~~~~v~~~I~---HGG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~-~lG~G~~~~~~~~~~~~~~~l~~ 415 (481)
. .++..+++..+-+ +.|. .++.||+++|+|+|+......... +.. . +.|...+. -+.+.+.+
T Consensus 255 ~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~----i~~~~-~~g~~~~~-----~d~~~~~~ 324 (357)
T cd03795 255 EEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSY----VNLHG-VTGLVVPP-----GDPAALAE 324 (357)
T ss_pred HHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhH----HhhCC-CceEEeCC-----CCHHHHHH
Confidence 5 4777777622222 2344 378999999999999765544433 332 4 67776654 37899999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHH
Q 042731 416 KIELVMNETEKGTDLRNKANEVKVI 440 (481)
Q Consensus 416 ~i~~vl~~~~~~~~~~~~a~~~~~~ 440 (481)
+|.++++|++..+++++++++....
T Consensus 325 ~i~~l~~~~~~~~~~~~~~~~~~~~ 349 (357)
T cd03795 325 AIRRLLEDPELRERLGEAARERAEE 349 (357)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 9999999986666677776665443
No 64
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.80 E-value=5.3e-06 Score=80.14 Aligned_cols=290 Identities=18% Similarity=0.144 Sum_probs=155.4
Q ss_pred CChHHHHHHHHHHHhCCCCEEEEEeCCcc--hhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHH
Q 042731 4 GHIIPFLALARRLEETNKYTITLVNTPLN--LKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQA 81 (481)
Q Consensus 4 GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (481)
-|+.-+-.+.++|.+ +||+|.+.+-... .+.+.. .++++..+.-. + .....++...
T Consensus 11 ~hvhfFk~~I~eL~~-~GheV~it~R~~~~~~~LL~~-----yg~~y~~iG~~----g------------~~~~~Kl~~~ 68 (335)
T PF04007_consen 11 AHVHFFKNIIRELEK-RGHEVLITARDKDETEELLDL-----YGIDYIVIGKH----G------------DSLYGKLLES 68 (335)
T ss_pred hHHHHHHHHHHHHHh-CCCEEEEEEeccchHHHHHHH-----cCCCeEEEcCC----C------------CCHHHHHHHH
Confidence 488899999999999 9999999986432 344554 67777776621 1 0011233333
Q ss_pred HhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHHHHHHHHHhhhcCCCCCCCCCcccc
Q 042731 82 SASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGFGFACLYSMLLNLPHRSTDSDEFLL 161 (481)
Q Consensus 82 ~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 161 (481)
.. ..-.+.++++++ +||++|+- .++.+..+|.-+|+|+|.+.-.......
T Consensus 69 ~~-R~~~l~~~~~~~-------~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~--------------------- 118 (335)
T PF04007_consen 69 IE-RQYKLLKLIKKF-------KPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQ--------------------- 118 (335)
T ss_pred HH-HHHHHHHHHHhh-------CCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhcc---------------------
Confidence 32 233456677777 99999986 4577888999999999998754321100
Q ss_pred CCCCCCCccccCccChhhhcCCCCChHHHHHHHHHHhhccCceEE-EccchhhhhhHHHHHHhhcCCCeeeecccccCcc
Q 042731 162 PDFPEASTLHVTQISPYLRATDGSDSFSVFYKKLLLLWKDADGIL-VNTVEELDKIGLMYFKRKFGRPVWPIGPVLLSTE 240 (481)
Q Consensus 162 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~vGpl~~~~~ 240 (481)
+.+++++.+.. ..-. .+... ....+.....+. .+.+.++. +..
T Consensus 119 ----~~Lt~Pla~~i---~~P~---~~~~~---~~~~~G~~~~i~~y~G~~E~a----------------------yl~- 162 (335)
T PF04007_consen 119 ----NRLTLPLADVI---ITPE---AIPKE---FLKRFGAKNQIRTYNGYKELA----------------------YLH- 162 (335)
T ss_pred ----ceeehhcCCee---ECCc---ccCHH---HHHhcCCcCCEEEECCeeeEE----------------------eec-
Confidence 00001100000 0000 00000 000000000111 22222221 111
Q ss_pred ccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccc----cCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhh
Q 042731 241 SRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNT----IAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKA 316 (481)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~----~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~ 316 (481)
..+++++..+-+... +++.|++-+.+..+ .....+.++++.+++.+..+++..+...
T Consensus 163 --------~F~Pd~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~---------- 223 (335)
T PF04007_consen 163 --------PFKPDPEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYED---------- 223 (335)
T ss_pred --------CCCCChhHHHHcCCC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcc----------
Confidence 012345555555533 45678888777432 2345567789999998887555544331
Q ss_pred cCCCchhHHHHhccCCCcEEE-ecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhc
Q 042731 317 NKWLPRGFEERIKCSGQGLVV-HKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMG 395 (481)
Q Consensus 317 ~~~l~~~~~~~~~~~~~~~~v-~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG 395 (481)
.+.-+ + .-++.+ ..-++...||.++++ +|+-|| ....||...|+|.|.+ +.++-...-..+.+. |
T Consensus 224 ---~~~~~-~-----~~~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-G 289 (335)
T PF04007_consen 224 ---QRELF-E-----KYGVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-G 289 (335)
T ss_pred ---hhhHH-h-----ccCccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-C
Confidence 11111 1 111222 234555589999886 998887 4566999999999985 222322233445546 6
Q ss_pred ceEEeeccCCcccCHHHHHHHHHHHh
Q 042731 396 VCVEIARGMSCEVLKEDLSAKIELVM 421 (481)
Q Consensus 396 ~G~~~~~~~~~~~~~~~l~~~i~~vl 421 (481)
.-.+ ..+.+++.+.|.+.+
T Consensus 290 ll~~-------~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 290 LLYH-------STDPDEIVEYVRKNL 308 (335)
T ss_pred CeEe-------cCCHHHHHHHHHHhh
Confidence 5222 345777777665544
No 65
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.79 E-value=1.8e-05 Score=80.67 Aligned_cols=94 Identities=13% Similarity=0.131 Sum_probs=63.0
Q ss_pred CcEEEecccCHHH---hhccc--Cccceeecc---Cc-hhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeecc
Q 042731 333 QGLVVHKWAPQVE---ILSHR--SVSAFLSHC---GW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARG 403 (481)
Q Consensus 333 ~~~~v~~~ip~~~---ll~~~--~v~~~I~HG---G~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~ 403 (481)
+++.+.+++++.+ ++..+ +.++||... |. .+++||+++|+|+|+.... .....+.+. ..|..++.
T Consensus 317 ~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~~-~~G~lv~~- 390 (439)
T TIGR02472 317 GKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIANC-RNGLLVDV- 390 (439)
T ss_pred ceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcCC-CcEEEeCC-
Confidence 4566777777654 45544 223477654 43 5899999999999988543 344444433 46777765
Q ss_pred CCcccCHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 042731 404 MSCEVLKEDLSAKIELVMNETEKGTDLRNKANE 436 (481)
Q Consensus 404 ~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~ 436 (481)
-+++.|+++|.++++|++..+.+.+++++
T Consensus 391 ----~d~~~la~~i~~ll~~~~~~~~~~~~a~~ 419 (439)
T TIGR02472 391 ----LDLEAIASALEDALSDSSQWQLWSRNGIE 419 (439)
T ss_pred ----CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 36899999999999998444445555544
No 66
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.78 E-value=2.3e-07 Score=92.11 Aligned_cols=134 Identities=16% Similarity=0.127 Sum_probs=83.7
Q ss_pred CCeEEEEEccccccc-CHHHHHHHHHHHHhcCC-ceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccC---CCcEEEec
Q 042731 265 YTSVLYVSFGSQNTI-AASQMMQLAMALEASGK-NFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCS---GQGLVVHK 339 (481)
Q Consensus 265 ~~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~v~~ 339 (481)
+++.|++++|..... ....+..++++++.... ++.++...+. ...+.+.+..... ..++.+.+
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~------------~~~~~l~~~~~~~~~~~~~v~~~~ 264 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHP------------RTRPRIREAGLEFLGHHPNVLLIS 264 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCC------------ChHHHHHHHHHhhccCCCCEEEEC
Confidence 355788888876543 34556777777776533 2444443321 0112333322211 35677766
Q ss_pred ccCHH---HhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHH
Q 042731 340 WAPQV---EILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAK 416 (481)
Q Consensus 340 ~ip~~---~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~ 416 (481)
..++. .++..+++ +|+.+| |.+.||+++|+|+|+++...+ +..+.+. |+++.+.. +.+.|.++
T Consensus 265 ~~~~~~~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~~-g~~~~~~~------~~~~i~~~ 330 (363)
T cd03786 265 PLGYLYFLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVES-GTNVLVGT------DPEAILAA 330 (363)
T ss_pred CcCHHHHHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhhe-eeEEecCC------CHHHHHHH
Confidence 55543 45666665 999999 778899999999999874322 2233435 76655532 58999999
Q ss_pred HHHHhcCC
Q 042731 417 IELVMNET 424 (481)
Q Consensus 417 i~~vl~~~ 424 (481)
|.++++++
T Consensus 331 i~~ll~~~ 338 (363)
T cd03786 331 IEKLLSDE 338 (363)
T ss_pred HHHHhcCc
Confidence 99999987
No 67
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.75 E-value=3.4e-05 Score=77.79 Aligned_cols=94 Identities=10% Similarity=0.095 Sum_probs=66.8
Q ss_pred CcEEEecccCHH---HhhcccCccceee---ccCc-hhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCC
Q 042731 333 QGLVVHKWAPQV---EILSHRSVSAFLS---HCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMS 405 (481)
Q Consensus 333 ~~~~v~~~ip~~---~ll~~~~v~~~I~---HGG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~ 405 (481)
.++.+.+++++. ++|..+++ +|. +.|+ .++.||+++|+|+|+.... .....+.+. +.|..++.
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~--- 352 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADG-ETGLLVDG--- 352 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccC-CceEECCC---
Confidence 578888999874 57888776 553 2344 4899999999999987543 344445534 56776654
Q ss_pred cccCHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 042731 406 CEVLKEDLSAKIELVMNETEKGTDLRNKANEVK 438 (481)
Q Consensus 406 ~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~ 438 (481)
-+.+.++++|.+++++++..+.+++++.+..
T Consensus 353 --~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~ 383 (405)
T TIGR03449 353 --HDPADWADALARLLDDPRTRIRMGAAAVEHA 383 (405)
T ss_pred --CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3689999999999998745556666666543
No 68
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.73 E-value=3e-06 Score=84.25 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=58.4
Q ss_pred CCcEEEecccCHH---HhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCccc
Q 042731 332 GQGLVVHKWAPQV---EILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEV 408 (481)
Q Consensus 332 ~~~~~v~~~ip~~---~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~ 408 (481)
..++.+.+.+++. .++..+++ +|+..|.. +.||+++|+|+|.++..++++. +... |.+..+..
T Consensus 254 ~~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~~------ 319 (365)
T TIGR00236 254 SKRVHLIEPLEYLDFLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVGT------ 319 (365)
T ss_pred CCCEEEECCCChHHHHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeCC------
Confidence 3577777776654 45666665 89877644 7999999999999976665553 2225 77765533
Q ss_pred CHHHHHHHHHHHhcCC
Q 042731 409 LKEDLSAKIELVMNET 424 (481)
Q Consensus 409 ~~~~l~~~i~~vl~~~ 424 (481)
+++.|.+++.++++++
T Consensus 320 d~~~i~~ai~~ll~~~ 335 (365)
T TIGR00236 320 DKENITKAAKRLLTDP 335 (365)
T ss_pred CHHHHHHHHHHHHhCh
Confidence 6899999999999988
No 69
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.72 E-value=1.9e-05 Score=79.44 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=53.8
Q ss_pred CcEEEecccCHH---HhhcccCccceee---ccCch-hHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCC
Q 042731 333 QGLVVHKWAPQV---EILSHRSVSAFLS---HCGWN-SVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMS 405 (481)
Q Consensus 333 ~~~~v~~~ip~~---~ll~~~~v~~~I~---HGG~g-t~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~ 405 (481)
+++.+.+|+|+. .+++.+++ +|. +-|.| ++.||+++|+|+|+.+..+ ....+. . |.+... .
T Consensus 250 ~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~-~-~~~~~~-~--- 317 (398)
T cd03796 250 DRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLP-P-DMILLA-E--- 317 (398)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhee-C-Cceeec-C---
Confidence 467888999864 47777776 554 23443 9999999999999976643 223333 3 434222 2
Q ss_pred cccCHHHHHHHHHHHhcCC
Q 042731 406 CEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 406 ~~~~~~~l~~~i~~vl~~~ 424 (481)
.+.+.+.++|.+++++.
T Consensus 318 --~~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 318 --PDVESIVRKLEEAISIL 334 (398)
T ss_pred --CCHHHHHHHHHHHHhCh
Confidence 26899999999999875
No 70
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.71 E-value=6.8e-05 Score=81.72 Aligned_cols=97 Identities=10% Similarity=0.125 Sum_probs=65.3
Q ss_pred CcEEEecccCHHH---hhcccC--ccceeec---cCc-hhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeecc
Q 042731 333 QGLVVHKWAPQVE---ILSHRS--VSAFLSH---CGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARG 403 (481)
Q Consensus 333 ~~~~v~~~ip~~~---ll~~~~--v~~~I~H---GG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~ 403 (481)
+.|.+.+++++.+ ++..++ .++||.- =|+ .++.||+++|+|+|+....+ ....+... .-|+.++.
T Consensus 548 g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g-~nGlLVdP- 621 (1050)
T TIGR02468 548 GQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVL-DNGLLVDP- 621 (1050)
T ss_pred CeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccC-CcEEEECC-
Confidence 5677778887754 455442 1237664 344 48899999999999986433 22333322 46777765
Q ss_pred CCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 042731 404 MSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKV 439 (481)
Q Consensus 404 ~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~ 439 (481)
-+++.|+++|.++++|++..+.|.+++.+..+
T Consensus 622 ----~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~ 653 (1050)
T TIGR02468 622 ----HDQQAIADALLKLVADKQLWAECRQNGLKNIH 653 (1050)
T ss_pred ----CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 36899999999999998555567777666543
No 71
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.70 E-value=2.3e-05 Score=78.53 Aligned_cols=94 Identities=12% Similarity=0.098 Sum_probs=65.4
Q ss_pred CCcEEEecccCHH---HhhcccCccceeec---cCc-hhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccC
Q 042731 332 GQGLVVHKWAPQV---EILSHRSVSAFLSH---CGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGM 404 (481)
Q Consensus 332 ~~~~~v~~~ip~~---~ll~~~~v~~~I~H---GG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 404 (481)
..++.+.+++|+. .++..+++ ++.. -|. .++.||+++|+|+|+.-.. .....+... +.|..+..
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~~-~~g~~~~~-- 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVDG-ETGFLCEP-- 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhccC-CceEEeCC--
Confidence 3688899999986 46777776 5532 222 5789999999999997443 233344433 56766532
Q ss_pred CcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 042731 405 SCEVLKEDLSAKIELVMNETEKGTDLRNKANEVK 438 (481)
Q Consensus 405 ~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~ 438 (481)
+.+.++++|.+++++++..+.+.+++++..
T Consensus 350 ----~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~ 379 (392)
T cd03805 350 ----TPEEFAEAMLKLANDPDLADRMGAAGRKRV 379 (392)
T ss_pred ----CHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 689999999999999855556666665543
No 72
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.70 E-value=3.3e-05 Score=76.03 Aligned_cols=92 Identities=14% Similarity=0.138 Sum_probs=64.7
Q ss_pred CCcEEEecccCHHH---hhcccCccceeec---cC-chhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccC
Q 042731 332 GQGLVVHKWAPQVE---ILSHRSVSAFLSH---CG-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGM 404 (481)
Q Consensus 332 ~~~~~v~~~ip~~~---ll~~~~v~~~I~H---GG-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 404 (481)
..++.+.+++++.+ ++..+++ +|.- .| -.++.||+++|+|+|+.+.. .....+. . +.|.....
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~-~-~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIE-Y-GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhh-c-CceEEeCC--
Confidence 46788889999643 5777776 5443 22 36799999999999997543 3344444 4 67766654
Q ss_pred CcccCHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 042731 405 SCEVLKEDLSAKIELVMNETEKGTDLRNKANEV 437 (481)
Q Consensus 405 ~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~ 437 (481)
+.+.+.++|.+++++++..+.+.+++++.
T Consensus 331 ----~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 331 ----DVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred ----ChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 35999999999999985555566666655
No 73
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.68 E-value=7.5e-06 Score=81.21 Aligned_cols=94 Identities=16% Similarity=0.246 Sum_probs=66.9
Q ss_pred CCcEEEecccCHH---HhhcccCccceeecc---------C-chhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceE
Q 042731 332 GQGLVVHKWAPQV---EILSHRSVSAFLSHC---------G-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCV 398 (481)
Q Consensus 332 ~~~~~v~~~ip~~---~ll~~~~v~~~I~HG---------G-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~ 398 (481)
..++.+.+++|+. .++..+++ +|..+ | -+++.||+++|+|+|+.+..+ +...+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheecC-CeeE
Confidence 4678888999875 45777776 55422 2 468999999999999876543 55555545 6787
Q ss_pred EeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 042731 399 EIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEV 437 (481)
Q Consensus 399 ~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~ 437 (481)
.++. -+.+++.++|.++++|++..+.+++++.+.
T Consensus 317 ~~~~-----~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~ 350 (367)
T cd05844 317 LVPE-----GDVAALAAALGRLLADPDLRARMGAAGRRR 350 (367)
T ss_pred EECC-----CCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 7754 367999999999999884444555555544
No 74
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.66 E-value=2.2e-05 Score=77.54 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=64.0
Q ss_pred CCcEEEecccC-HH---HhhcccCccceeeccC----chhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeecc
Q 042731 332 GQGLVVHKWAP-QV---EILSHRSVSAFLSHCG----WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARG 403 (481)
Q Consensus 332 ~~~~~v~~~ip-~~---~ll~~~~v~~~I~HGG----~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~ 403 (481)
..++...+|++ +. .++..+++ +|.... -+++.||+++|+|+|+.... .....+... +.|..++.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~-~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHG-VTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCC-CceEEeCC-
Confidence 45677889998 43 46777776 776432 47899999999999986543 222333323 46666654
Q ss_pred CCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 042731 404 MSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVK 438 (481)
Q Consensus 404 ~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~ 438 (481)
.+.+.+++++.+++++++..+.+.+++++..
T Consensus 315 ----~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 345 (365)
T cd03825 315 ----GDPEDLAEGIEWLLADPDEREELGEAARELA 345 (365)
T ss_pred ----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 4689999999999998844444555555443
No 75
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.65 E-value=1e-06 Score=85.64 Aligned_cols=149 Identities=15% Similarity=0.098 Sum_probs=87.2
Q ss_pred eEEEEEcccccccCHHHHHHHHHHHHhcCCc-eEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHH
Q 042731 267 SVLYVSFGSQNTIAASQMMQLAMALEASGKN-FIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVE 345 (481)
Q Consensus 267 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ 345 (481)
++|.+--||..+--...+..+++++.....+ .++.+.... . . +.+.+.... ...+.+.+ .-.+
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~-----------~-~-~~i~~~~~~-~~~~~~~~--~~~~ 231 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF-----------K-G-KDLKEIYGD-ISEFEISY--DTHK 231 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC-----------c-H-HHHHHHHhc-CCCcEEec--cHHH
Confidence 5899999998653334455455555443222 222222221 0 1 222222210 11222222 2346
Q ss_pred hhcccCccceeeccCchhHHHHHHhCCcEEeccc--ccchhhhHHHHH---HHhcceEEeec----------cCCcccCH
Q 042731 346 ILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPL--AAEQFYNSKLLE---EEMGVCVEIAR----------GMSCEVLK 410 (481)
Q Consensus 346 ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~--~~DQ~~na~~v~---~~lG~G~~~~~----------~~~~~~~~ 410 (481)
++..+++ .|+-+|..|+ |+..+|+|+|+ ++ ..-|++||+++. .. |++-.+-. --+...|+
T Consensus 232 ~m~~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~i-gL~Nii~~~~~~~~vvPEllQ~~~t~ 306 (347)
T PRK14089 232 ALLEAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHI-GLANIFFDFLGKEPLHPELLQEFVTV 306 (347)
T ss_pred HHHhhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCee-ehHHHhcCCCcccccCchhhcccCCH
Confidence 7878775 9999999999 99999999998 44 347889999988 33 54433310 01256889
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 042731 411 EDLSAKIELVMNETEKGTDLRNKANEVKVII 441 (481)
Q Consensus 411 ~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~ 441 (481)
+.|.+++.+. . .+++++...++.+.+
T Consensus 307 ~~la~~i~~~-~----~~~~~~~~~~l~~~l 332 (347)
T PRK14089 307 ENLLKAYKEM-D----REKFFKKSKELREYL 332 (347)
T ss_pred HHHHHHHHHH-H----HHHHHHHHHHHHHHh
Confidence 9999999772 1 125666666666665
No 76
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.64 E-value=0.00015 Score=71.40 Aligned_cols=96 Identities=18% Similarity=0.266 Sum_probs=64.7
Q ss_pred CCcEEEec-ccCHH---HhhcccCccceeec------cCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEee
Q 042731 332 GQGLVVHK-WAPQV---EILSHRSVSAFLSH------CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIA 401 (481)
Q Consensus 332 ~~~~~v~~-~ip~~---~ll~~~~v~~~I~H------GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~ 401 (481)
..++...+ |+|+. .++..+++ +|.- |--++++||+++|+|+|+.+..+ ...+... +.|..+.
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc
Confidence 35666664 48864 57777776 5532 23458999999999999987654 2233434 6777766
Q ss_pred ccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 042731 402 RGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVI 440 (481)
Q Consensus 402 ~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~ 440 (481)
. -+.+.++++|.+++++++..+++++++++..+.
T Consensus 318 ~-----~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 351 (366)
T cd03822 318 P-----GDPAALAEAIRRLLADPELAQALRARAREYARA 351 (366)
T ss_pred C-----CCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh
Confidence 5 358999999999999974444555555554443
No 77
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.61 E-value=0.00014 Score=71.33 Aligned_cols=89 Identities=19% Similarity=0.238 Sum_probs=58.6
Q ss_pred CcEEEecccCH-HHhhcccCccceeeccCc----hhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcc
Q 042731 333 QGLVVHKWAPQ-VEILSHRSVSAFLSHCGW----NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCE 407 (481)
Q Consensus 333 ~~~~v~~~ip~-~~ll~~~~v~~~I~HGG~----gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~ 407 (481)
.++.+.+.... ..++..+++ +|..+.+ +++.||+++|+|+|+... ..+...+.+ .|..++.
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~---~g~~~~~----- 316 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGD---TGFLVPP----- 316 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhc---CCEEeCC-----
Confidence 45555554444 468888776 7765443 799999999999998543 344444443 4555543
Q ss_pred cCHHHHHHHHHHHhcCChhhHHHHHHHH
Q 042731 408 VLKEDLSAKIELVMNETEKGTDLRNKAN 435 (481)
Q Consensus 408 ~~~~~l~~~i~~vl~~~~~~~~~~~~a~ 435 (481)
-+.+.+.++|.+++++++..+.+.+++.
T Consensus 317 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~ 344 (365)
T cd03807 317 GDPEALAEAIEALLADPALRQALGEAAR 344 (365)
T ss_pred CCHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 3589999999999998734334444443
No 78
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.59 E-value=7.4e-05 Score=73.50 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=65.5
Q ss_pred CCcEEEecccCHH---HhhcccCccceeec----------cCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceE
Q 042731 332 GQGLVVHKWAPQV---EILSHRSVSAFLSH----------CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCV 398 (481)
Q Consensus 332 ~~~~~v~~~ip~~---~ll~~~~v~~~I~H----------GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~ 398 (481)
+.++.+.+++|+. .++..+++ +|.- |.-++++||+++|+|+|+.+... ....+... ..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~-~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDG-ETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCC-CceE
Confidence 4678899999864 46667776 5552 22368999999999999875432 22334422 4777
Q ss_pred EeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 042731 399 EIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVK 438 (481)
Q Consensus 399 ~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~ 438 (481)
.+.. -+.+.+.++|.+++++++..+++++++++..
T Consensus 308 ~~~~-----~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~ 342 (355)
T cd03799 308 LVPP-----GDPEALADAIERLLDDPELRREMGEAGRARV 342 (355)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 7754 3789999999999999854445556555443
No 79
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.58 E-value=3.9e-05 Score=74.68 Aligned_cols=81 Identities=14% Similarity=0.132 Sum_probs=55.2
Q ss_pred CCcEEEecccCHH-HhhcccCccceeec----cCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCc
Q 042731 332 GQGLVVHKWAPQV-EILSHRSVSAFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSC 406 (481)
Q Consensus 332 ~~~~~v~~~ip~~-~ll~~~~v~~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 406 (481)
..++.+.++.+.. .++..+++ +|+- |.-+++.||+++|+|+|+.... .....+.+. +.|...+.
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~---- 313 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPV---- 313 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECC----
Confidence 3567777887764 68888776 5532 2246799999999999986443 455566655 77877765
Q ss_pred ccCHHHH---HHHHHHHhcCC
Q 042731 407 EVLKEDL---SAKIELVMNET 424 (481)
Q Consensus 407 ~~~~~~l---~~~i~~vl~~~ 424 (481)
-+.+.+ .+++.+++.++
T Consensus 314 -~~~~~~~~~~~~i~~~~~~~ 333 (353)
T cd03811 314 -GDEAALAAAALALLDLLLDP 333 (353)
T ss_pred -CCHHHHHHHHHHHHhccCCh
Confidence 356666 56666666666
No 80
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.56 E-value=0.00044 Score=73.57 Aligned_cols=97 Identities=18% Similarity=0.234 Sum_probs=64.0
Q ss_pred CCcEEEecccCHH-HhhcccCccceee---ccCc-hhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCc
Q 042731 332 GQGLVVHKWAPQV-EILSHRSVSAFLS---HCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSC 406 (481)
Q Consensus 332 ~~~~~v~~~ip~~-~ll~~~~v~~~I~---HGG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 406 (481)
.+++.+.+|.++. .++..+++ +|. +.|+ +++.||+++|+|+|+.... .....+.+. ..|..++. .
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~---~ 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPA---D 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCC---C
Confidence 3678888888764 57888776 554 4564 6889999999999997643 234445533 46888876 5
Q ss_pred ccCHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 042731 407 EVLKEDLSAKIELVMNETEKGTDLRNKANEVK 438 (481)
Q Consensus 407 ~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~ 438 (481)
..+++.+.+++.+++.+......+++++++..
T Consensus 643 d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 643 TVTAPDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred CCChHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 56667777777776654311225666554443
No 81
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.51 E-value=4.8e-05 Score=75.46 Aligned_cols=147 Identities=14% Similarity=0.165 Sum_probs=83.2
Q ss_pred EEEEEcccccccCHHHHHHHHHHHHhcCCce-EEEEcCCCCCCCcchhhhcCCCchhHHHHhcc--CCCcEEEecccCH-
Q 042731 268 VLYVSFGSQNTIAASQMMQLAMALEASGKNF-IWVVRPPIGFDINSEFKANKWLPRGFEERIKC--SGQGLVVHKWAPQ- 343 (481)
Q Consensus 268 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~v~~~ip~- 343 (481)
.+++..|.........+..+++++.....++ ++.+|.+. ..+.+.+..+. .+.++.+.+|+++
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~-------------~~~~l~~~~~~~~l~~~v~f~G~~~~~ 247 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS-------------DFEKCKAYSRELGIEQRIIWHGWQSQP 247 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc-------------cHHHHHHHHHHcCCCCeEEEecccCCc
Confidence 4667777764322233455666666543232 33344331 11223222221 1467888888754
Q ss_pred -HH---hhcccCccceeecc---C-chhHHHHHHhCCcEEecc-cccchhhhHHHHHHHhcceEEeeccCCcccCHHHHH
Q 042731 344 -VE---ILSHRSVSAFLSHC---G-WNSVLEALSHGVPIIGWP-LAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLS 414 (481)
Q Consensus 344 -~~---ll~~~~v~~~I~HG---G-~gt~~eal~~GvP~l~~P-~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~ 414 (481)
.. .+..+++ +|... | -.++.||+++|+|+|+.. ..+ ....+.+. ..|..++. -+.+.++
T Consensus 248 ~~~~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv~~-----~d~~~la 315 (359)
T PRK09922 248 WEVVQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELYTP-----GNIDEFV 315 (359)
T ss_pred HHHHHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEECC-----CCHHHHH
Confidence 22 3434454 66432 2 468999999999999875 322 22344433 46777754 3799999
Q ss_pred HHHHHHhcCCh--hhHHHHHHHHHHHH
Q 042731 415 AKIELVMNETE--KGTDLRNKANEVKV 439 (481)
Q Consensus 415 ~~i~~vl~~~~--~~~~~~~~a~~~~~ 439 (481)
++|.++++|++ ..+.++++++++..
T Consensus 316 ~~i~~l~~~~~~~~~~~~~~~~~~~~~ 342 (359)
T PRK09922 316 GKLNKVISGEVKYQHDAIPNSIERFYE 342 (359)
T ss_pred HHHHHHHhCcccCCHHHHHHHHHHhhH
Confidence 99999999984 12234444444444
No 82
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.50 E-value=0.00024 Score=70.18 Aligned_cols=89 Identities=19% Similarity=0.248 Sum_probs=55.0
Q ss_pred CCcEEEecccCHHH---hhcccCccceeeccC----c-hhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeecc
Q 042731 332 GQGLVVHKWAPQVE---ILSHRSVSAFLSHCG----W-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARG 403 (481)
Q Consensus 332 ~~~~~v~~~ip~~~---ll~~~~v~~~I~HGG----~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~ 403 (481)
..++.+.+++++.+ ++..+++ ++-++- . +++.||+++|+|+|+....+. ...+. ..|.....
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~~---~~g~~~~~- 316 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVLG---DKAIYFKV- 316 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceeec---CCeeEecC-
Confidence 56888999999864 5555555 554433 2 479999999999998765432 11122 12323332
Q ss_pred CCcccCHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 042731 404 MSCEVLKEDLSAKIELVMNETEKGTDLRNKANE 436 (481)
Q Consensus 404 ~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~ 436 (481)
.+.++++|.+++++++..+.+.+++++
T Consensus 317 ------~~~l~~~i~~l~~~~~~~~~~~~~~~~ 343 (363)
T cd04955 317 ------GDDLASLLEELEADPEEVSAMAKAARE 343 (363)
T ss_pred ------chHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 112999999999987333344444443
No 83
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.50 E-value=4.4e-05 Score=78.23 Aligned_cols=200 Identities=12% Similarity=0.067 Sum_probs=107.7
Q ss_pred hhhhhhHHHHHHhhcCCCeeeecc-cccCccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHH
Q 042731 211 EELDKIGLMYFKRKFGRPVWPIGP-VLLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAM 289 (481)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~~~vGp-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~ 289 (481)
..+|.+++.. .+-++.+||. +...... .....+..+.+.-.+++++|-+--||...-=...+..+++
T Consensus 369 fPFE~~~y~~----~gv~v~yVGHPL~d~i~~--------~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~ 436 (608)
T PRK01021 369 LPFEQNLFKD----SPLRTVYLGHPLVETISS--------FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQ 436 (608)
T ss_pred CccCHHHHHh----cCCCeEEECCcHHhhccc--------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHH
Confidence 3566666543 4678999994 4433210 1123344444443445678999999986432344555666
Q ss_pred HHH--hc--CCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCc---EEEecccCHHHhhcccCccceeeccCch
Q 042731 290 ALE--AS--GKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQG---LVVHKWAPQVEILSHRSVSAFLSHCGWN 362 (481)
Q Consensus 290 al~--~~--~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~v~~~ip~~~ll~~~~v~~~I~HGG~g 362 (481)
+.+ .. ..++++...... ..+.+.+... ..+ +.+..--...+++..+++ .+.-+|.
T Consensus 437 aa~~~~l~~~l~fvvp~a~~~-------------~~~~i~~~~~--~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT- 498 (608)
T PRK01021 437 AFLASSLASTHQLLVSSANPK-------------YDHLILEVLQ--QEGCLHSHIVPSQFRYELMRECDC--ALAKCGT- 498 (608)
T ss_pred HHHHHHhccCeEEEEecCchh-------------hHHHHHHHHh--hcCCCCeEEecCcchHHHHHhcCe--eeecCCH-
Confidence 665 32 344544432220 1122222222 111 122110012467888776 6666675
Q ss_pred hHHHHHHhCCcEEeccc-ccchhhhHHHHHHH----hc-----ceEEeec---cCCcccCHHHHHHHHHHHhcCChhhHH
Q 042731 363 SVLEALSHGVPIIGWPL-AAEQFYNSKLLEEE----MG-----VCVEIAR---GMSCEVLKEDLSAKIELVMNETEKGTD 429 (481)
Q Consensus 363 t~~eal~~GvP~l~~P~-~~DQ~~na~~v~~~----lG-----~G~~~~~---~~~~~~~~~~l~~~i~~vl~~~~~~~~ 429 (481)
.++|+...|+||+++=. ..=-+..++++.+. .| +|..+-+ ++....+++.|++++ ++|.|++..++
T Consensus 499 aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~ 577 (608)
T PRK01021 499 IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEK 577 (608)
T ss_pred HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHH
Confidence 46799999999998622 11223445555430 00 1111111 112467899999997 88888855566
Q ss_pred HHHHHHHHHHHH
Q 042731 430 LRNKANEVKVII 441 (481)
Q Consensus 430 ~~~~a~~~~~~~ 441 (481)
+++..+++.+.+
T Consensus 578 ~~~~l~~lr~~L 589 (608)
T PRK01021 578 QKDACRDLYQAM 589 (608)
T ss_pred HHHHHHHHHHHh
Confidence 777777777766
No 84
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.47 E-value=5.1e-05 Score=76.37 Aligned_cols=93 Identities=26% Similarity=0.294 Sum_probs=64.7
Q ss_pred CCcEEEecccCHH-HhhcccCcccee--ec--cCc-hhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCC
Q 042731 332 GQGLVVHKWAPQV-EILSHRSVSAFL--SH--CGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMS 405 (481)
Q Consensus 332 ~~~~~v~~~ip~~-~ll~~~~v~~~I--~H--GG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~ 405 (481)
..++.+.+++++. .++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+.- .... |.|..+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC----
Confidence 4678888999874 57888787 55 32 455 36999999999999987543221 1123 5666553
Q ss_pred cccCHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 042731 406 CEVLKEDLSAKIELVMNETEKGTDLRNKANEVK 438 (481)
Q Consensus 406 ~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~ 438 (481)
-++++++++|.++++|++..+.+.+++++..
T Consensus 347 --~~~~~la~ai~~ll~~~~~~~~~~~~ar~~v 377 (397)
T TIGR03087 347 --ADPADFAAAILALLANPAEREELGQAARRRV 377 (397)
T ss_pred --CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 2689999999999999844455666665543
No 85
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.47 E-value=3e-05 Score=76.02 Aligned_cols=200 Identities=16% Similarity=0.189 Sum_probs=102.2
Q ss_pred hhhhhhHHHHHHhhcCCCeeeec-ccccCccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHH
Q 042731 211 EELDKIGLMYFKRKFGRPVWPIG-PVLLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAM 289 (481)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~ 289 (481)
..+|.+++.. .+-++.+|| |+...... ...+....+.+ -.+.+++|.+--||...--...+..+++
T Consensus 141 fPFE~~~y~~----~g~~~~~VGHPl~d~~~~--------~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~ 207 (373)
T PF02684_consen 141 FPFEPEFYKK----HGVPVTYVGHPLLDEVKP--------EPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLE 207 (373)
T ss_pred CcccHHHHhc----cCCCeEEECCcchhhhcc--------CCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHH
Confidence 3556665443 457899999 55443211 11233444443 2334778999999986422233344455
Q ss_pred HHHh-----cCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEe-cccCHHHhhcccCccceeeccCchh
Q 042731 290 ALEA-----SGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVH-KWAPQVEILSHRSVSAFLSHCGWNS 363 (481)
Q Consensus 290 al~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~-~~ip~~~ll~~~~v~~~I~HGG~gt 363 (481)
+.+. .+.++++.+.... ....+.........++.+. -.-.-.+++..+++ .+.-.|. .
T Consensus 208 aa~~l~~~~p~l~fvvp~a~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-a 271 (373)
T PF02684_consen 208 AAKLLKKQRPDLQFVVPVAPEV-------------HEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASGT-A 271 (373)
T ss_pred HHHHHHHhCCCeEEEEecCCHH-------------HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-H
Confidence 5433 3445555543321 1111111111112222221 11233457877776 5555554 5
Q ss_pred HHHHHHhCCcEEecccc-cchhhhHHHHHHHhcceEEeec---cC-------CcccCHHHHHHHHHHHhcCChhhHHHHH
Q 042731 364 VLEALSHGVPIIGWPLA-AEQFYNSKLLEEEMGVCVEIAR---GM-------SCEVLKEDLSAKIELVMNETEKGTDLRN 432 (481)
Q Consensus 364 ~~eal~~GvP~l~~P~~-~DQ~~na~~v~~~lG~G~~~~~---~~-------~~~~~~~~l~~~i~~vl~~~~~~~~~~~ 432 (481)
++|+...|+|||++=-. .=-++.|+++.+. .. +.+.. ++ ....+++.|.+++.+++.|++..+..+.
T Consensus 272 TLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~-~~-isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~ 349 (373)
T PF02684_consen 272 TLEAALLGVPMVVAYKVSPLTYFIAKRLVKV-KY-ISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRKKQKE 349 (373)
T ss_pred HHHHHHhCCCEEEEEcCcHHHHHHHHHhhcC-CE-eechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 78999999999887322 1233344444421 21 11110 11 4678999999999999999833223333
Q ss_pred HHHHHHHHH
Q 042731 433 KANEVKVII 441 (481)
Q Consensus 433 ~a~~~~~~~ 441 (481)
..+++.+.+
T Consensus 350 ~~~~~~~~~ 358 (373)
T PF02684_consen 350 LFREIRQLL 358 (373)
T ss_pred HHHHHHHhh
Confidence 444444433
No 86
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.46 E-value=9.7e-05 Score=72.83 Aligned_cols=78 Identities=12% Similarity=0.134 Sum_probs=53.4
Q ss_pred CcEEEecccCH-HHhhcccCccceeeccC----chhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcc
Q 042731 333 QGLVVHKWAPQ-VEILSHRSVSAFLSHCG----WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCE 407 (481)
Q Consensus 333 ~~~~v~~~ip~-~~ll~~~~v~~~I~HGG----~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~ 407 (481)
.++.+.++..+ ..++..+++ +|.-.. -+++.||+++|+|+|+. |.+.+...+.. .|..+..
T Consensus 245 ~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~---~g~~~~~----- 310 (360)
T cd04951 245 NRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD---SGLIVPI----- 310 (360)
T ss_pred CcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC---CceEeCC-----
Confidence 46777777765 468888876 554332 46899999999999975 44445555553 3333433
Q ss_pred cCHHHHHHHHHHHhcCC
Q 042731 408 VLKEDLSAKIELVMNET 424 (481)
Q Consensus 408 ~~~~~l~~~i~~vl~~~ 424 (481)
-+.+.++++|.++++++
T Consensus 311 ~~~~~~~~~i~~ll~~~ 327 (360)
T cd04951 311 SDPEALANKIDEILKMS 327 (360)
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 36889999999999543
No 87
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.38 E-value=0.00079 Score=67.06 Aligned_cols=92 Identities=13% Similarity=0.146 Sum_probs=60.8
Q ss_pred cEEEecccCH-HHhhcccCccceee--c-cC-chhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCccc
Q 042731 334 GLVVHKWAPQ-VEILSHRSVSAFLS--H-CG-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEV 408 (481)
Q Consensus 334 ~~~v~~~ip~-~~ll~~~~v~~~I~--H-GG-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~ 408 (481)
++.+.++..+ ..++..+++ +|. + .| -.+++||+++|+|+|+.... .+...+.+. ..|..++. -
T Consensus 256 ~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~~-~~g~~~~~-----~ 323 (374)
T TIGR03088 256 LVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQHG-VTGALVPP-----G 323 (374)
T ss_pred eEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcCC-CceEEeCC-----C
Confidence 4555455444 468888887 553 2 23 46899999999999996653 344455533 46766654 4
Q ss_pred CHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 042731 409 LKEDLSAKIELVMNETEKGTDLRNKANEV 437 (481)
Q Consensus 409 ~~~~l~~~i~~vl~~~~~~~~~~~~a~~~ 437 (481)
+.+.++++|.+++++++..+.+.+++++.
T Consensus 324 d~~~la~~i~~l~~~~~~~~~~~~~a~~~ 352 (374)
T TIGR03088 324 DAVALARALQPYVSDPAARRAHGAAGRAR 352 (374)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 68899999999999874444455555443
No 88
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.37 E-value=2.9e-06 Score=69.47 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=80.6
Q ss_pred eEEEEEcccccccC--H-HHHHHHHHHHHhcCC-ceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccC
Q 042731 267 SVLYVSFGSQNTIA--A-SQMMQLAMALEASGK-NFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAP 342 (481)
Q Consensus 267 ~~V~vs~Gs~~~~~--~-~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip 342 (481)
..+||+-||....+ . -.-.+....+...|. +.|+..|.+. -..++....-.+.++-.+...+|-|
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~-----------~~~~d~~~~~~k~~gl~id~y~f~p 72 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQ-----------PFFGDPIDLIRKNGGLTIDGYDFSP 72 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCc-----------cCCCCHHHhhcccCCeEEEEEecCc
Confidence 47999999986321 0 111335666777766 5677777652 1122222222221133444567777
Q ss_pred H-HHhhcccCccceeeccCchhHHHHHHhCCcEEeccc----ccchhhhHHHHHHHhcceEEeec
Q 042731 343 Q-VEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPL----AAEQFYNSKLLEEEMGVCVEIAR 402 (481)
Q Consensus 343 ~-~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~lG~G~~~~~ 402 (481)
- .+....+++ +|+|+|+||++|.|..|+|.|+++- -..|-.-|..+++. |.=..-..
T Consensus 73 sl~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~~C~p 134 (170)
T KOG3349|consen 73 SLTEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLYYCTP 134 (170)
T ss_pred cHHHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEEEeec
Confidence 6 455656775 9999999999999999999999994 45899999999977 76655554
No 89
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.36 E-value=8.4e-06 Score=79.92 Aligned_cols=134 Identities=15% Similarity=0.117 Sum_probs=79.4
Q ss_pred CCCeEEEEEcccccccC----HHHHHHHHHHHHhc-CCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEe
Q 042731 264 PYTSVLYVSFGSQNTIA----ASQMMQLAMALEAS-GKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVH 338 (481)
Q Consensus 264 ~~~~~V~vs~Gs~~~~~----~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~ 338 (481)
.+++.++|++=...... ...+..+++++... +.++||...... .....+.+..+.. +++.+.
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p------------~~~~~i~~~l~~~-~~v~~~ 244 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNP------------RGSDIIIEKLKKY-DNVRLI 244 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-H------------HHHHHHHHHHTT--TTEEEE
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCc------------hHHHHHHHHhccc-CCEEEE
Confidence 45779999985544433 34566677777776 677888876431 0112334444432 478877
Q ss_pred cccCH---HHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHH
Q 042731 339 KWAPQ---VEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSA 415 (481)
Q Consensus 339 ~~ip~---~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ 415 (481)
+-+++ ..+|.++++ +|+..| |-.-||.+.|+|+|.+=...+.+. -+. . |..+.+. .+++.|.+
T Consensus 245 ~~l~~~~~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~iR~~geRqe---~r~-~-~~nvlv~------~~~~~I~~ 310 (346)
T PF02350_consen 245 EPLGYEEYLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNIRDSGERQE---GRE-R-GSNVLVG------TDPEAIIQ 310 (346)
T ss_dssp ----HHHHHHHHHHESE--EEESSH-HHHHHGGGGT--EEECSSS-S-HH---HHH-T-TSEEEET------SSHHHHHH
T ss_pred CCCCHHHHHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEecCCCCCHH---HHh-h-cceEEeC------CCHHHHHH
Confidence 76665 568888776 999999 444499999999999933333332 222 4 6665543 47999999
Q ss_pred HHHHHhcCC
Q 042731 416 KIELVMNET 424 (481)
Q Consensus 416 ~i~~vl~~~ 424 (481)
+|.+++++.
T Consensus 311 ai~~~l~~~ 319 (346)
T PF02350_consen 311 AIEKALSDK 319 (346)
T ss_dssp HHHHHHH-H
T ss_pred HHHHHHhCh
Confidence 999999874
No 90
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.36 E-value=2.7e-05 Score=76.87 Aligned_cols=127 Identities=14% Similarity=0.186 Sum_probs=81.2
Q ss_pred EEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHH---H
Q 042731 269 LYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQV---E 345 (481)
Q Consensus 269 V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~---~ 345 (481)
.++..|.+.. ...+..++++++..+.+++++-.+. ..+.+.+ .. ..++.+.+++|+. .
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g~--------------~~~~l~~-~~--~~~V~~~g~~~~~~~~~ 257 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDGP--------------ELDRLRA-KA--GPNVTFLGRVSDEELRD 257 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECCh--------------hHHHHHh-hc--CCCEEEecCCCHHHHHH
Confidence 3455677653 2234556677777666665554322 1122222 11 6789999999985 4
Q ss_pred hhcccCccceeeccCc-hhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCC
Q 042731 346 ILSHRSVSAFLSHCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 346 ll~~~~v~~~I~HGG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
++..+++-.+-+.-|. .++.||+++|+|+|+....+ ....+.+. +.|..++. -+.+.++++|.++++|+
T Consensus 258 ~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~-----~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 258 LYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE-----QTVESLAAAVERFEKNE 327 (351)
T ss_pred HHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC-----CCHHHHHHHHHHHHhCc
Confidence 6777776222233444 35789999999999986533 33334444 57887765 36888999999999987
No 91
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.34 E-value=0.00047 Score=67.93 Aligned_cols=133 Identities=16% Similarity=0.066 Sum_probs=78.0
Q ss_pred CeEEEEEccccccc-CHHHHHHHHHHHHhcCCceEE-EEcCCCCCCCcchhhhcCCCchhHHHHhc--cCCCcEEEeccc
Q 042731 266 TSVLYVSFGSQNTI-AASQMMQLAMALEASGKNFIW-VVRPPIGFDINSEFKANKWLPRGFEERIK--CSGQGLVVHKWA 341 (481)
Q Consensus 266 ~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~v~~~i 341 (481)
+..+++..|+.... ..+.+.+.+..+...+.++.+ .+|... ..+.+....+ ....++.+.++.
T Consensus 191 ~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~-------------~~~~~~~~~~~~~~~~~v~~~g~~ 257 (358)
T cd03812 191 DKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGE-------------LEEEIKKKVKELGLEDKVIFLGVR 257 (358)
T ss_pred CCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCc-------------hHHHHHHHHHhcCCCCcEEEeccc
Confidence 34566777877542 345555555555543333322 333321 1122222221 013567777775
Q ss_pred CH-HHhhcccCccceeec----cCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHH
Q 042731 342 PQ-VEILSHRSVSAFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAK 416 (481)
Q Consensus 342 p~-~~ll~~~~v~~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~ 416 (481)
.+ .+++..+++ +|+- |--.+++||+++|+|+|+....+ ....+. . +.|..+.. -+++.++++
T Consensus 258 ~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~-~-~~~~~~~~-----~~~~~~a~~ 324 (358)
T cd03812 258 NDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLT-D-LVKFLSLD-----ESPEIWAEE 324 (358)
T ss_pred CCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhc-c-CccEEeCC-----CCHHHHHHH
Confidence 44 468888776 5543 33478999999999999865544 233334 3 55555443 357999999
Q ss_pred HHHHhcCC
Q 042731 417 IELVMNET 424 (481)
Q Consensus 417 i~~vl~~~ 424 (481)
|.++++|+
T Consensus 325 i~~l~~~~ 332 (358)
T cd03812 325 ILKLKSED 332 (358)
T ss_pred HHHHHhCc
Confidence 99999999
No 92
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.31 E-value=0.00015 Score=71.30 Aligned_cols=91 Identities=18% Similarity=0.243 Sum_probs=61.0
Q ss_pred CCcEEEecccCHH---HhhcccCccceeec----cCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccC
Q 042731 332 GQGLVVHKWAPQV---EILSHRSVSAFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGM 404 (481)
Q Consensus 332 ~~~~~v~~~ip~~---~ll~~~~v~~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 404 (481)
..++...+++|+. .++..+++ +|.- |.-++++||+++|+|+|+..... ....+. ..|..+..
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~---~~~~~~~~-- 320 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAG---DAALYFDP-- 320 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceec---CceeeeCC--
Confidence 5788888999875 46777776 4432 23458999999999999865432 111222 23444544
Q ss_pred CcccCHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 042731 405 SCEVLKEDLSAKIELVMNETEKGTDLRNKANE 436 (481)
Q Consensus 405 ~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~ 436 (481)
-+.+.+.++|.++++|++..+.+.+++++
T Consensus 321 ---~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 349 (365)
T cd03809 321 ---LDPEALAAAIERLLEDPALREELRERGLA 349 (365)
T ss_pred ---CCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 37899999999999998444455555543
No 93
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.30 E-value=0.00034 Score=68.22 Aligned_cols=127 Identities=16% Similarity=0.151 Sum_probs=74.7
Q ss_pred EEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhcc---CCCcEEEecccCHHH
Q 042731 269 LYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKC---SGQGLVVHKWAPQVE 345 (481)
Q Consensus 269 V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~v~~~ip~~~ 345 (481)
+.+..|..... .....++++++..+.+++++-.... ...+...... ...++.+.+++++.+
T Consensus 173 ~i~~~Gr~~~~--Kg~~~li~~~~~~~~~l~i~G~~~~--------------~~~~~~~~~~~~~~~~~v~~~G~~~~~~ 236 (335)
T cd03802 173 YLLFLGRISPE--KGPHLAIRAARRAGIPLKLAGPVSD--------------PDYFYREIAPELLDGPDIEYLGEVGGAE 236 (335)
T ss_pred EEEEEEeeccc--cCHHHHHHHHHhcCCeEEEEeCCCC--------------HHHHHHHHHHhcccCCcEEEeCCCCHHH
Confidence 44555776432 2234566777777777665543321 1111111110 146788999999854
Q ss_pred ---hhcccCccceee--ccCc-hhHHHHHHhCCcEEecccccchhhhHHHHHHHhc-ceEEeeccCCcccCHHHHHHHHH
Q 042731 346 ---ILSHRSVSAFLS--HCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMG-VCVEIARGMSCEVLKEDLSAKIE 418 (481)
Q Consensus 346 ---ll~~~~v~~~I~--HGG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG-~G~~~~~~~~~~~~~~~l~~~i~ 418 (481)
+++.+++-++-+ +-|. .++.||+++|+|+|+.... .....+. . | .|..++ . .+.+.++|.
T Consensus 237 ~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~-~-~~~g~l~~----~---~~~l~~~l~ 303 (335)
T cd03802 237 KAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVE-D-GVTGFLVD----S---VEELAAAVA 303 (335)
T ss_pred HHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhee-C-CCcEEEeC----C---HHHHHHHHH
Confidence 577777622222 2344 4799999999999987553 3333343 3 4 565553 1 899999999
Q ss_pred HHhcCC
Q 042731 419 LVMNET 424 (481)
Q Consensus 419 ~vl~~~ 424 (481)
+++..+
T Consensus 304 ~l~~~~ 309 (335)
T cd03802 304 RADRLD 309 (335)
T ss_pred HHhccH
Confidence 886543
No 94
>PLN00142 sucrose synthase
Probab=98.29 E-value=0.001 Score=71.11 Aligned_cols=73 Identities=14% Similarity=0.193 Sum_probs=47.0
Q ss_pred ceeec---cCch-hHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHH----hcCCh
Q 042731 354 AFLSH---CGWN-SVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELV----MNETE 425 (481)
Q Consensus 354 ~~I~H---GG~g-t~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~v----l~~~~ 425 (481)
+||.- -|.| ++.||+++|+|+|+.... .....+.+- .-|..++. -+++.++++|.++ ++|++
T Consensus 669 VfVlPS~~EgFGLvvLEAMA~GlPVVATdvG----G~~EIV~dG-~tG~LV~P-----~D~eaLA~aI~~lLekLl~Dp~ 738 (815)
T PLN00142 669 AFVQPALYEAFGLTVVEAMTCGLPTFATCQG----GPAEIIVDG-VSGFHIDP-----YHGDEAANKIADFFEKCKEDPS 738 (815)
T ss_pred EEEeCCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEEeCC-----CCHHHHHHHHHHHHHHhcCCHH
Confidence 36653 4554 899999999999986543 344455533 45888776 3577788887654 46774
Q ss_pred hhHHHHHHHHH
Q 042731 426 KGTDLRNKANE 436 (481)
Q Consensus 426 ~~~~~~~~a~~ 436 (481)
..+.|.+++.+
T Consensus 739 lr~~mg~~Ar~ 749 (815)
T PLN00142 739 YWNKISDAGLQ 749 (815)
T ss_pred HHHHHHHHHHH
Confidence 44455555533
No 95
>PLN02275 transferase, transferring glycosyl groups
Probab=98.26 E-value=0.0014 Score=65.26 Aligned_cols=75 Identities=12% Similarity=0.264 Sum_probs=51.0
Q ss_pred CcEEEec-ccCHHH---hhcccCccceee-c-----cCc-hhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEee
Q 042731 333 QGLVVHK-WAPQVE---ILSHRSVSAFLS-H-----CGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIA 401 (481)
Q Consensus 333 ~~~~v~~-~ip~~~---ll~~~~v~~~I~-H-----GG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~ 401 (481)
+++++.. |+|..+ +|+.+++ +|. + -|. ++++||+++|+|+|+... ..+...+++. +.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC
Confidence 4566545 788754 5888777 653 1 122 479999999999999743 3355556544 5787763
Q ss_pred ccCCcccCHHHHHHHHHHHh
Q 042731 402 RGMSCEVLKEDLSAKIELVM 421 (481)
Q Consensus 402 ~~~~~~~~~~~l~~~i~~vl 421 (481)
+++.++++|.++|
T Consensus 359 -------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -------SSSELADQLLELL 371 (371)
T ss_pred -------CHHHHHHHHHHhC
Confidence 3788999998764
No 96
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.26 E-value=0.0012 Score=65.47 Aligned_cols=131 Identities=21% Similarity=0.243 Sum_probs=78.6
Q ss_pred CeEEEEEccccc--c-cCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccC
Q 042731 266 TSVLYVSFGSQN--T-IAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAP 342 (481)
Q Consensus 266 ~~~V~vs~Gs~~--~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip 342 (481)
++.|+|++=... . ...+.+..+++++...+.+++++.....+ . + ..+-+.+.+... ...++.+.+-++
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p--~--~----~~i~~~i~~~~~-~~~~v~l~~~l~ 271 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADA--G--S----RIINEAIEEYVN-EHPNFRLFKSLG 271 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCC--C--c----hHHHHHHHHHhc-CCCCEEEECCCC
Confidence 458888885543 2 34577889999998887666666533210 0 0 001111222111 024677766555
Q ss_pred H---HHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEE-eeccCCcccCHHHHHHHHH
Q 042731 343 Q---VEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVE-IARGMSCEVLKEDLSAKIE 418 (481)
Q Consensus 343 ~---~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~-~~~~~~~~~~~~~l~~~i~ 418 (481)
+ ..++.++++ +|+.++.|. .||.+.|||+|.+- +.+.. + +. |..+. +. .+++.|.+++.
T Consensus 272 ~~~~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~e~---~-~~-g~nvl~vg------~~~~~I~~a~~ 334 (365)
T TIGR03568 272 QERYLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQKG---R-LR-ADSVIDVD------PDKEEIVKAIE 334 (365)
T ss_pred hHHHHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCchh---h-hh-cCeEEEeC------CCHHHHHHHHH
Confidence 4 568888776 998886554 89999999999873 32221 1 13 43333 32 36899999999
Q ss_pred HHhc
Q 042731 419 LVMN 422 (481)
Q Consensus 419 ~vl~ 422 (481)
++++
T Consensus 335 ~~~~ 338 (365)
T TIGR03568 335 KLLD 338 (365)
T ss_pred HHhC
Confidence 9543
No 97
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.16 E-value=0.002 Score=66.49 Aligned_cols=136 Identities=12% Similarity=0.018 Sum_probs=73.4
Q ss_pred EEEEEccccccc-CHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHH--
Q 042731 268 VLYVSFGSQNTI-AASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQV-- 344 (481)
Q Consensus 268 ~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~-- 344 (481)
.+++..|..... ..+.+.+.+..+...+.+++++-.+. ..+.+.+.+..+....++.+..-.++.
T Consensus 297 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 364 (476)
T cd03791 297 PLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGD------------PEYEEALRELAARYPGRVAVLIGYDEALA 364 (476)
T ss_pred CEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCC------------HHHHHHHHHHHHhCCCcEEEEEeCCHHHH
Confidence 466677777642 24445555555554455555443222 001122332222113556543333442
Q ss_pred -HhhcccCccceeec---cCc-hhHHHHHHhCCcEEeccccc--chhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHH
Q 042731 345 -EILSHRSVSAFLSH---CGW-NSVLEALSHGVPIIGWPLAA--EQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKI 417 (481)
Q Consensus 345 -~ll~~~~v~~~I~H---GG~-gt~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i 417 (481)
.++..+++ +|.- -|. .+.+||+++|+|+|+....+ |--.+...-... |.|..++. -+++.+.++|
T Consensus 365 ~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~-----~~~~~l~~~i 436 (476)
T cd03791 365 HLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG-----YNADALLAAL 436 (476)
T ss_pred HHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC-----CCHHHHHHHH
Confidence 36677776 5543 233 37789999999999876543 211111000123 57888765 4689999999
Q ss_pred HHHhcC
Q 042731 418 ELVMNE 423 (481)
Q Consensus 418 ~~vl~~ 423 (481)
.++++.
T Consensus 437 ~~~l~~ 442 (476)
T cd03791 437 RRALAL 442 (476)
T ss_pred HHHHHH
Confidence 998864
No 98
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.13 E-value=0.0053 Score=61.37 Aligned_cols=93 Identities=16% Similarity=0.214 Sum_probs=61.7
Q ss_pred EEE-ecccCHH---HhhcccCccceeec---cC-chhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCc
Q 042731 335 LVV-HKWAPQV---EILSHRSVSAFLSH---CG-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSC 406 (481)
Q Consensus 335 ~~v-~~~ip~~---~ll~~~~v~~~I~H---GG-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 406 (481)
++. .+++++. .++..+++ +|+- -| -.+++||+++|+|+|+... ......++.. +.|..++. .
T Consensus 262 v~~~~~~~~~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~---~ 331 (388)
T TIGR02149 262 IIWINKMLPKEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPP---D 331 (388)
T ss_pred eEEecCCCCHHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCC---C
Confidence 443 3577764 46777776 6643 23 3467999999999998654 3445555544 57888775 2
Q ss_pred ccC----HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 042731 407 EVL----KEDLSAKIELVMNETEKGTDLRNKANEV 437 (481)
Q Consensus 407 ~~~----~~~l~~~i~~vl~~~~~~~~~~~~a~~~ 437 (481)
..+ .+.+.++|.++++|++..+.+.+++++.
T Consensus 332 ~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~ 366 (388)
T TIGR02149 332 NSDADGFQAELAKAINILLADPELAKKMGIAGRKR 366 (388)
T ss_pred CCcccchHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 221 2899999999999985555566665554
No 99
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.04 E-value=0.0096 Score=60.37 Aligned_cols=74 Identities=14% Similarity=0.115 Sum_probs=50.5
Q ss_pred EEecccCHHHhhcccCccceeeccC----chhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHH
Q 042731 336 VVHKWAPQVEILSHRSVSAFLSHCG----WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKE 411 (481)
Q Consensus 336 ~v~~~ip~~~ll~~~~v~~~I~HGG----~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~ 411 (481)
++.++.+..+++...++ ||.-+- -.++.||+++|+|+|+....+. ..+.+. +-|... -+.+
T Consensus 287 vf~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~~-----~~v~~~-~ng~~~-------~~~~ 351 (462)
T PLN02846 287 VYPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-----EFFKQF-PNCRTY-------DDGK 351 (462)
T ss_pred EECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCCc-----ceeecC-CceEec-------CCHH
Confidence 34566666778888776 877643 3688999999999999865432 223322 333332 2578
Q ss_pred HHHHHHHHHhcCC
Q 042731 412 DLSAKIELVMNET 424 (481)
Q Consensus 412 ~l~~~i~~vl~~~ 424 (481)
.+.++|.++|+++
T Consensus 352 ~~a~ai~~~l~~~ 364 (462)
T PLN02846 352 GFVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHHccC
Confidence 9999999999865
No 100
>PLN02949 transferase, transferring glycosyl groups
Probab=98.00 E-value=0.026 Score=57.79 Aligned_cols=97 Identities=14% Similarity=0.101 Sum_probs=59.6
Q ss_pred CCcEEEecccCHHH---hhcccCccceee---ccCch-hHHHHHHhCCcEEecccccchhhhHHHHHH-Hhc-ceEEeec
Q 042731 332 GQGLVVHKWAPQVE---ILSHRSVSAFLS---HCGWN-SVLEALSHGVPIIGWPLAAEQFYNSKLLEE-EMG-VCVEIAR 402 (481)
Q Consensus 332 ~~~~~v~~~ip~~~---ll~~~~v~~~I~---HGG~g-t~~eal~~GvP~l~~P~~~DQ~~na~~v~~-~lG-~G~~~~~ 402 (481)
.+++.+.+++|+.+ +|..+++ +|+ +-|.| ++.||+++|+|+|+....+-- ...+.. .-| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC--
Confidence 35788889998754 6777765 663 23444 799999999999998654310 000000 001 22221
Q ss_pred cCCcccCHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHH
Q 042731 403 GMSCEVLKEDLSAKIELVMNE-TEKGTDLRNKANEVKVI 440 (481)
Q Consensus 403 ~~~~~~~~~~l~~~i~~vl~~-~~~~~~~~~~a~~~~~~ 440 (481)
-+.+.++++|.+++++ ++..+.+.+++++..+.
T Consensus 407 -----~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~ 440 (463)
T PLN02949 407 -----TTVEEYADAILEVLRMRETERLEIAAAARKRANR 440 (463)
T ss_pred -----CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 2689999999999985 43444566666654433
No 101
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.95 E-value=0.0068 Score=62.35 Aligned_cols=136 Identities=13% Similarity=0.078 Sum_probs=73.0
Q ss_pred eEEEEEccccccc-CHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEE-EecccCHH
Q 042731 267 SVLYVSFGSQNTI-AASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLV-VHKWAPQV 344 (481)
Q Consensus 267 ~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-v~~~ip~~ 344 (481)
..+++..|..... ..+.+.+.+..+...+.+++++ |.+. ..+.+.+++..+..+.++. ..+|-...
T Consensus 282 ~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lviv-G~g~-----------~~~~~~l~~l~~~~~~~v~~~~g~~~~~ 349 (466)
T PRK00654 282 APLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLL-GTGD-----------PELEEAFRALAARYPGKVGVQIGYDEAL 349 (466)
T ss_pred CcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEE-ecCc-----------HHHHHHHHHHHHHCCCcEEEEEeCCHHH
Confidence 3466667777532 2344444333343345666555 3321 0011233333322234443 34553222
Q ss_pred --HhhcccCccceeec---cCch-hHHHHHHhCCcEEeccccc--chhhhHHHHHHHhcceEEeeccCCcccCHHHHHHH
Q 042731 345 --EILSHRSVSAFLSH---CGWN-SVLEALSHGVPIIGWPLAA--EQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAK 416 (481)
Q Consensus 345 --~ll~~~~v~~~I~H---GG~g-t~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~ 416 (481)
.+++.+++ +|.- -|.| +.+||+++|+|.|+....+ |.-.+...-... +.|..++. -+++.|+++
T Consensus 350 ~~~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~-----~d~~~la~~ 421 (466)
T PRK00654 350 AHRIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD-----FNAEDLLRA 421 (466)
T ss_pred HHHHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC-----CCHHHHHHH
Confidence 46777776 6643 3554 7889999999999875432 211111000123 56777765 468999999
Q ss_pred HHHHhc
Q 042731 417 IELVMN 422 (481)
Q Consensus 417 i~~vl~ 422 (481)
|.++++
T Consensus 422 i~~~l~ 427 (466)
T PRK00654 422 LRRALE 427 (466)
T ss_pred HHHHHH
Confidence 999886
No 102
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.92 E-value=0.0032 Score=60.78 Aligned_cols=214 Identities=16% Similarity=0.124 Sum_probs=115.3
Q ss_pred hhhhhHHHHHHhhcCCCeeeecccccCc-cccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHH
Q 042731 212 ELDKIGLMYFKRKFGRPVWPIGPVLLST-ESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMA 290 (481)
Q Consensus 212 ~l~~~~~~~~~~~~~~~~~~vGpl~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~a 290 (481)
.+|+++++. .+-+..+||.-+... +. ...+..+++-+.....++++.+--||..+--......+..+
T Consensus 145 PFE~~~y~k----~g~~~~yVGHpl~d~i~~--------~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a 212 (381)
T COG0763 145 PFEPAFYDK----FGLPCTYVGHPLADEIPL--------LPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQA 212 (381)
T ss_pred CCCHHHHHh----cCCCeEEeCChhhhhccc--------cccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHH
Confidence 566776655 344589999544433 11 12344566656444557789999999864222233334444
Q ss_pred HHh-----cCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCC---CcEEEecccCH--HHhhcccCccceeeccC
Q 042731 291 LEA-----SGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSG---QGLVVHKWAPQ--VEILSHRSVSAFLSHCG 360 (481)
Q Consensus 291 l~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~v~~~ip~--~~ll~~~~v~~~I~HGG 360 (481)
... .+.+|++-+.... .+...+...... -..++ +++ .+++..+++ .+.-+|
T Consensus 213 ~~~l~~~~~~~~~vlp~~~~~--------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~aD~--al~aSG 273 (381)
T COG0763 213 AQELKARYPDLKFVLPLVNAK--------------YRRIIEEALKWEVAGLSLIL---IDGEKRKAFAAADA--ALAASG 273 (381)
T ss_pred HHHHHhhCCCceEEEecCcHH--------------HHHHHHHHhhccccCceEEe---cCchHHHHHHHhhH--HHHhcc
Confidence 333 3456666654331 011111111001 11222 222 235666665 555555
Q ss_pred chhHHHHHHhCCcEEeccccc-chhhhHHHHHHHhc--------ceEEeec-cCCcccCHHHHHHHHHHHhcCChhhHHH
Q 042731 361 WNSVLEALSHGVPIIGWPLAA-EQFYNSKLLEEEMG--------VCVEIAR-GMSCEVLKEDLSAKIELVMNETEKGTDL 430 (481)
Q Consensus 361 ~gt~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~lG--------~G~~~~~-~~~~~~~~~~l~~~i~~vl~~~~~~~~~ 430 (481)
.. +.|+..+|+|||+.=-.. =-++-+++.... . +|..+-+ -=....+++.|++++..++.|++..+.+
T Consensus 274 T~-tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~-~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~ 351 (381)
T COG0763 274 TA-TLEAALAGTPMVVAYKVKPITYFIAKRLVKL-PYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREAL 351 (381)
T ss_pred HH-HHHHHHhCCCEEEEEeccHHHHHHHHHhccC-CcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHH
Confidence 43 679999999999862110 112223322211 1 1111111 0035678999999999999998555677
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHH
Q 042731 431 RNKANEVKVIIKNAVRNETNFKGSSVKAMDQFLNAA 466 (481)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 466 (481)
++...++...+ +.++++..+++.+++.+
T Consensus 352 ~~~~~~l~~~l--------~~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 352 KEKFRELHQYL--------REDPASEIAAQAVLELL 379 (381)
T ss_pred HHHHHHHHHHH--------cCCcHHHHHHHHHHHHh
Confidence 77777777777 44555666666666654
No 103
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.91 E-value=0.036 Score=56.21 Aligned_cols=80 Identities=16% Similarity=0.107 Sum_probs=53.3
Q ss_pred CCcEEEecccCHH---HhhcccCccceeec---cCc-hhHHHHHHhCCcEEecccccchhhhHHHHH---HHhcceEEee
Q 042731 332 GQGLVVHKWAPQV---EILSHRSVSAFLSH---CGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLE---EEMGVCVEIA 401 (481)
Q Consensus 332 ~~~~~v~~~ip~~---~ll~~~~v~~~I~H---GG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~---~~lG~G~~~~ 401 (481)
.+++.+.+++|+. .+|..+++ +|+- -|. .++.||+++|+|+|+.-..+.- ...++ .. ..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~g-~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDGG-PTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCCC-CceEEe-
Confidence 3578888999875 47777775 5542 122 4789999999999987543211 11111 12 456543
Q ss_pred ccCCcccCHHHHHHHHHHHhcCC
Q 042731 402 RGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 402 ~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
. ++++++++|.++++++
T Consensus 377 ----~--d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 ----S--TAEEYAEAIEKILSLS 393 (419)
T ss_pred ----C--CHHHHHHHHHHHHhCC
Confidence 1 6899999999999976
No 104
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.87 E-value=0.012 Score=58.49 Aligned_cols=92 Identities=20% Similarity=0.296 Sum_probs=58.8
Q ss_pred CCcEEEeccc--CHH---HhhcccCccceeecc---Cc-hhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeec
Q 042731 332 GQGLVVHKWA--PQV---EILSHRSVSAFLSHC---GW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIAR 402 (481)
Q Consensus 332 ~~~~~v~~~i--p~~---~ll~~~~v~~~I~HG---G~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~ 402 (481)
..++.+.++. ++. .+++.+++ +|... |. .++.||+++|+|+|+....+ ....+... ..|..++
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~-~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDG-ETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccC-CceEEeC-
Confidence 3456676776 432 46777776 66543 33 48999999999999875432 23334433 4565443
Q ss_pred cCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 042731 403 GMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEV 437 (481)
Q Consensus 403 ~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~ 437 (481)
+.+.++.+|.+++++++..+.+.+++++.
T Consensus 323 ------~~~~~a~~i~~ll~~~~~~~~~~~~a~~~ 351 (372)
T cd03792 323 ------TVEEAAVRILYLLRDPELRRKMGANAREH 351 (372)
T ss_pred ------CcHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 35677889999999874444555555553
No 105
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.84 E-value=0.039 Score=56.92 Aligned_cols=135 Identities=12% Similarity=0.025 Sum_probs=74.4
Q ss_pred EEEEEccccccc-CHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHH--
Q 042731 268 VLYVSFGSQNTI-AASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQV-- 344 (481)
Q Consensus 268 ~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~-- 344 (481)
.+++..|..... ..+.+.+.+..+...+.+++++ |.+. ..+.+.+.......+.++.+....+..
T Consensus 292 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~-G~g~-----------~~~~~~l~~~~~~~~~~v~~~~~~~~~~~ 359 (473)
T TIGR02095 292 PLFGVISRLTQQKGVDLLLAALPELLELGGQLVVL-GTGD-----------PELEEALRELAERYPGNVRVIIGYDEALA 359 (473)
T ss_pred CEEEEEecCccccChHHHHHHHHHHHHcCcEEEEE-CCCC-----------HHHHHHHHHHHHHCCCcEEEEEcCCHHHH
Confidence 456666777542 3444444444454445555544 3321 002223333222224556555555553
Q ss_pred -HhhcccCccceeecc---Cch-hHHHHHHhCCcEEeccccc--chhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHH
Q 042731 345 -EILSHRSVSAFLSHC---GWN-SVLEALSHGVPIIGWPLAA--EQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKI 417 (481)
Q Consensus 345 -~ll~~~~v~~~I~HG---G~g-t~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i 417 (481)
.+++.+++ +|.-. |.| +++||+++|+|+|+....+ |.-.+...-... +.|..+.. -+++.|+++|
T Consensus 360 ~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~~-----~d~~~la~~i 431 (473)
T TIGR02095 360 HLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFEE-----YDPGALLAAL 431 (473)
T ss_pred HHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeCC-----CCHHHHHHHH
Confidence 46777776 66432 444 7889999999999876543 211111000112 56777764 4788999999
Q ss_pred HHHhc
Q 042731 418 ELVMN 422 (481)
Q Consensus 418 ~~vl~ 422 (481)
.+++.
T Consensus 432 ~~~l~ 436 (473)
T TIGR02095 432 SRALR 436 (473)
T ss_pred HHHHH
Confidence 99887
No 106
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=97.81 E-value=0.078 Score=57.08 Aligned_cols=93 Identities=13% Similarity=0.124 Sum_probs=56.8
Q ss_pred CcEEEeccc-CH---HHhhcc-cC-ccceeecc---Cc-hhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeec
Q 042731 333 QGLVVHKWA-PQ---VEILSH-RS-VSAFLSHC---GW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIAR 402 (481)
Q Consensus 333 ~~~~v~~~i-p~---~~ll~~-~~-v~~~I~HG---G~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~ 402 (481)
+.+.+.++. +. .+++.+ ++ .++||.-. |. .|++||+++|+|+|+.-.. .....+.+- .-|..++.
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV~dg-~tGfLVdp 693 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEIIQDG-VSGFHIDP 693 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEEeCC
Confidence 456665653 32 345542 22 12366532 33 4899999999999986443 344455533 56888876
Q ss_pred cCCcccCHHHHHHHHHHHh----cCChhhHHHHHHHH
Q 042731 403 GMSCEVLKEDLSAKIELVM----NETEKGTDLRNKAN 435 (481)
Q Consensus 403 ~~~~~~~~~~l~~~i~~vl----~~~~~~~~~~~~a~ 435 (481)
-+++.++++|.+++ +|++..+.+.+++.
T Consensus 694 -----~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~ 725 (784)
T TIGR02470 694 -----YHGEEAAEKIVDFFEKCDEDPSYWQKISQGGL 725 (784)
T ss_pred -----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 36788999998876 56634344555543
No 107
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.76 E-value=0.00084 Score=67.39 Aligned_cols=140 Identities=20% Similarity=0.256 Sum_probs=77.9
Q ss_pred CCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHh---ccCCCcEEEeccc
Q 042731 265 YTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERI---KCSGQGLVVHKWA 341 (481)
Q Consensus 265 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~v~~~i 341 (481)
+..++|.+|.......++.+....+-|+..+...+|...... . ++ ..+.... ....+.+++.+..
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~---~-~~--------~~l~~~~~~~Gv~~~Ri~f~~~~ 350 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA---S-GE--------ARLRRRFAAHGVDPDRIIFSPVA 350 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST---T-HH--------HHHHHHHHHTTS-GGGEEEEE--
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH---H-HH--------HHHHHHHHHcCCChhhEEEcCCC
Confidence 456999999999988999999999999999999999886552 0 00 1122211 1223567777777
Q ss_pred CHHH---hhcccCcccee---eccCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHH
Q 042731 342 PQVE---ILSHRSVSAFL---SHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSA 415 (481)
Q Consensus 342 p~~~---ll~~~~v~~~I---~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ 415 (481)
+..+ .+...++ ++ ..+|..|++|||++|||+|..|-..-.-..+.-+-..+|+...+-. +.++-.+
T Consensus 351 ~~~ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~------s~~eYv~ 422 (468)
T PF13844_consen 351 PREEHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD------SEEEYVE 422 (468)
T ss_dssp -HHHHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S------SHHHHHH
T ss_pred CHHHHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC------CHHHHHH
Confidence 7654 3344554 33 4578899999999999999999654333344333335588866654 4555555
Q ss_pred HHHHHhcCC
Q 042731 416 KIELVMNET 424 (481)
Q Consensus 416 ~i~~vl~~~ 424 (481)
...++-+|+
T Consensus 423 ~Av~La~D~ 431 (468)
T PF13844_consen 423 IAVRLATDP 431 (468)
T ss_dssp HHHHHHH-H
T ss_pred HHHHHhCCH
Confidence 555666776
No 108
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.75 E-value=0.013 Score=60.60 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=67.6
Q ss_pred CCcEEEecccCHHHhhcccCccceee---ccCc-hhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcc
Q 042731 332 GQGLVVHKWAPQVEILSHRSVSAFLS---HCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCE 407 (481)
Q Consensus 332 ~~~~~v~~~ip~~~ll~~~~v~~~I~---HGG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~ 407 (481)
...+...++.+..+++..+++ +|. .-|. .+++||+++|+|+|+..... .+...++.- .-|..++.+. ..
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g-~nG~lv~~~~-~~ 447 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDN-KNGYLIPIDE-EE 447 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCC-CCEEEEeCCc-cc
Confidence 356777788888889988886 665 3344 58999999999999975421 233344422 3576665310 01
Q ss_pred cC----HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 042731 408 VL----KEDLSAKIELVMNETEKGTDLRNKANEVKVII 441 (481)
Q Consensus 408 ~~----~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~ 441 (481)
-+ .+.|+++|.++++++ ..+.|.++|.+.++.+
T Consensus 448 ~d~~~~~~~la~~I~~ll~~~-~~~~~~~~a~~~a~~f 484 (500)
T TIGR02918 448 DDEDQIITALAEKIVEYFNSN-DIDAFHEYSYQIAEGF 484 (500)
T ss_pred cchhHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHhc
Confidence 12 788999999999544 5566777777765554
No 109
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.67 E-value=0.0017 Score=65.65 Aligned_cols=153 Identities=16% Similarity=0.203 Sum_probs=90.5
Q ss_pred CeEEEEEcccccccC-HHHHHHHHHHHHhcC--CceEEEEcCCCCCCCcchhhhcCCCchhHHHHhc--cCCCcEEEecc
Q 042731 266 TSVLYVSFGSQNTIA-ASQMMQLAMALEASG--KNFIWVVRPPIGFDINSEFKANKWLPRGFEERIK--CSGQGLVVHKW 340 (481)
Q Consensus 266 ~~~V~vs~Gs~~~~~-~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~v~~~ 340 (481)
+...+++.|...... .+.+.+.+..+.... .++.|+.-+.. . ..+.+.+..+ ....++...+|
T Consensus 229 ~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g------~------~~~~l~~~~~~~~~~~~V~f~G~ 296 (407)
T cd04946 229 DTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGG------P------LEDTLKELAESKPENISVNFTGE 296 (407)
T ss_pred CCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCc------h------HHHHHHHHHHhcCCCceEEEecC
Confidence 345667778876432 344434444443332 35655432221 0 1122222221 11356888899
Q ss_pred cCHHH---hhcccCccceeeccC----chhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHH
Q 042731 341 APQVE---ILSHRSVSAFLSHCG----WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDL 413 (481)
Q Consensus 341 ip~~~---ll~~~~v~~~I~HGG----~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l 413 (481)
+++.+ ++..++++++|...- -.+++||+++|+|+|+... ......+.+. +.|..+.. .-+.+++
T Consensus 297 v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i~~~-~~G~l~~~----~~~~~~l 367 (407)
T cd04946 297 LSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIVDNG-GNGLLLSK----DPTPNEL 367 (407)
T ss_pred CChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHhcCC-CcEEEeCC----CCCHHHH
Confidence 99764 455444555765543 3579999999999998643 3344555533 47877764 3478999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHH
Q 042731 414 SAKIELVMNETEKGTDLRNKANEVKV 439 (481)
Q Consensus 414 ~~~i~~vl~~~~~~~~~~~~a~~~~~ 439 (481)
+++|.++++|++..+.++++|++.-+
T Consensus 368 a~~I~~ll~~~~~~~~m~~~ar~~~~ 393 (407)
T cd04946 368 VSSLSKFIDNEEEYQTMREKAREKWE 393 (407)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999999988555566666665543
No 110
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.66 E-value=0.0021 Score=64.89 Aligned_cols=95 Identities=18% Similarity=0.274 Sum_probs=66.2
Q ss_pred CCcEEEecccCHHH---hhcccCccceeec---------cCc-hhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceE
Q 042731 332 GQGLVVHKWAPQVE---ILSHRSVSAFLSH---------CGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCV 398 (481)
Q Consensus 332 ~~~~~v~~~ip~~~---ll~~~~v~~~I~H---------GG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~ 398 (481)
.+++.+.+|+|+.+ ++..+++ +|.- -|. .+++||+++|+|+|+....+ ....+.+. ..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCC-CceE
Confidence 35788889999854 6777776 6642 344 56899999999999975432 33344433 4677
Q ss_pred EeeccCCcccCHHHHHHHHHHHhc-CChhhHHHHHHHHHHH
Q 042731 399 EIARGMSCEVLKEDLSAKIELVMN-ETEKGTDLRNKANEVK 438 (481)
Q Consensus 399 ~~~~~~~~~~~~~~l~~~i~~vl~-~~~~~~~~~~~a~~~~ 438 (481)
.++. -+.+.++++|.++++ |++..+.+.+++++..
T Consensus 351 lv~~-----~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v 386 (406)
T PRK15427 351 LVPE-----NDAQALAQRLAAFSQLDTDELAPVVKRAREKV 386 (406)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 7764 368999999999999 8744555666655443
No 111
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.66 E-value=0.0013 Score=57.58 Aligned_cols=149 Identities=18% Similarity=0.232 Sum_probs=90.1
Q ss_pred CCeEEEEEccccccc-CHHHHHHHHHHHHh--cCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEeccc
Q 042731 265 YTSVLYVSFGSQNTI-AASQMMQLAMALEA--SGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWA 341 (481)
Q Consensus 265 ~~~~V~vs~Gs~~~~-~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~i 341 (481)
.++.+++..|..... ..+.+..++.-+.. ...-.++++|... ... .+ ....+... ...++.+.+++
T Consensus 13 ~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~-------~~~--~~-~~~~~~~~-~~~~i~~~~~~ 81 (172)
T PF00534_consen 13 DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGE-------YKK--EL-KNLIEKLN-LKENIIFLGYV 81 (172)
T ss_dssp TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCC-------HHH--HH-HHHHHHTT-CGTTEEEEESH
T ss_pred CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcccc-------ccc--cc-cccccccc-ccccccccccc
Confidence 345677778887643 34444444444432 3333445555221 000 00 11111111 14578888998
Q ss_pred CH---HHhhcccCccceeec----cCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHH
Q 042731 342 PQ---VEILSHRSVSAFLSH----CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLS 414 (481)
Q Consensus 342 p~---~~ll~~~~v~~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~ 414 (481)
++ ..++..+++ +|+. |.-.++.||+++|+|+|+. |...+...+... +.|..++. . +.+.+.
T Consensus 82 ~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~~---~--~~~~l~ 149 (172)
T PF00534_consen 82 PDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFDP---N--DIEELA 149 (172)
T ss_dssp SHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEEST---T--SHHHHH
T ss_pred ccccccccccccee--ccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeCC---C--CHHHHH
Confidence 83 457888776 7766 4557999999999999975 345555566644 66888876 3 899999
Q ss_pred HHHHHHhcCChhhHHHHHHHHH
Q 042731 415 AKIELVMNETEKGTDLRNKANE 436 (481)
Q Consensus 415 ~~i~~vl~~~~~~~~~~~~a~~ 436 (481)
++|.+++++++..+.+.+++++
T Consensus 150 ~~i~~~l~~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 150 DAIEKLLNDPELRQKLGKNARE 171 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHhcC
Confidence 9999999998555566666654
No 112
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.63 E-value=0.0035 Score=62.68 Aligned_cols=82 Identities=11% Similarity=0.177 Sum_probs=58.3
Q ss_pred CCcEEEecccCHH---HhhcccCccceeec----cCc-hhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeecc
Q 042731 332 GQGLVVHKWAPQV---EILSHRSVSAFLSH----CGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARG 403 (481)
Q Consensus 332 ~~~~~v~~~ip~~---~ll~~~~v~~~I~H----GG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~ 403 (481)
+.++.+.+++|+. .+++.+++ +|.. .|. .++.||+++|+|+|+.... .+...+.+. ..|..+..
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~~- 327 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLAE- 327 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEeC-
Confidence 4577888999864 45878776 6643 333 5778999999999997653 234444433 46764432
Q ss_pred CCcccCHHHHHHHHHHHhcCC
Q 042731 404 MSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 404 ~~~~~~~~~l~~~i~~vl~~~ 424 (481)
..+++.++++|.++++|+
T Consensus 328 ---~~d~~~la~~I~~ll~d~ 345 (380)
T PRK15484 328 ---PMTSDSIISDINRTLADP 345 (380)
T ss_pred ---CCCHHHHHHHHHHHHcCH
Confidence 247999999999999998
No 113
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.63 E-value=0.025 Score=54.88 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=60.3
Q ss_pred cEEEe---cccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCH
Q 042731 334 GLVVH---KWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLK 410 (481)
Q Consensus 334 ~~~v~---~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~ 410 (481)
++... +|.+...++.++.+ ++|-.| |-.-||-..|+|++++-..-+||. .++ . |.-+.+.. +.
T Consensus 263 ~v~li~pl~~~~f~~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~TERPE---~v~-a-gt~~lvg~------~~ 328 (383)
T COG0381 263 RVKLIDPLGYLDFHNLMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTTERPE---GVE-A-GTNILVGT------DE 328 (383)
T ss_pred cEEEeCCcchHHHHHHHHhceE--EEecCC-chhhhHHhcCCcEEeeccCCCCcc---cee-c-CceEEeCc------cH
Confidence 45543 46777789988775 898887 456799999999999998889998 333 5 66555544 67
Q ss_pred HHHHHHHHHHhcCC
Q 042731 411 EDLSAKIELVMNET 424 (481)
Q Consensus 411 ~~l~~~i~~vl~~~ 424 (481)
+.|.+++.++++++
T Consensus 329 ~~i~~~~~~ll~~~ 342 (383)
T COG0381 329 ENILDAATELLEDE 342 (383)
T ss_pred HHHHHHHHHHhhCh
Confidence 99999999999988
No 114
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.57 E-value=0.014 Score=58.01 Aligned_cols=101 Identities=21% Similarity=0.267 Sum_probs=69.3
Q ss_pred CCcEEEecccCHH-HhhcccCccceeecc-C-chhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCccc
Q 042731 332 GQGLVVHKWAPQV-EILSHRSVSAFLSHC-G-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEV 408 (481)
Q Consensus 332 ~~~~~v~~~ip~~-~ll~~~~v~~~I~HG-G-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~ 408 (481)
..++.+.++.++. .++..+++-.+.++. | -.++.||+++|+|+|+..... .....+... ..|..++. -
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~-----~ 330 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK-----G 330 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC-----C
Confidence 3466676776664 688888873344432 3 358999999999999974331 133344434 56777754 4
Q ss_pred CHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 042731 409 LKEDLSAKIELVMNETEKGTDLRNKANEVKVII 441 (481)
Q Consensus 409 ~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~ 441 (481)
+.+.++++|..+++|++..+.+.+++.+.++.+
T Consensus 331 d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 363 (372)
T cd04949 331 DIEALAEAIIELLNDPKLLQKFSEAAYENAERY 363 (372)
T ss_pred cHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 689999999999999866666777777765554
No 115
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.001 Score=53.85 Aligned_cols=111 Identities=18% Similarity=0.174 Sum_probs=70.1
Q ss_pred EEEEcccccccCHHHHH--HHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHH-H
Q 042731 269 LYVSFGSQNTIAASQMM--QLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQV-E 345 (481)
Q Consensus 269 V~vs~Gs~~~~~~~~~~--~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~-~ 345 (481)
+||+-||....=...+. ++..-...-..++|+.+|... ..| +. +-.++-+++-+-. .
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d------------~kp------va--gl~v~~F~~~~kiQs 61 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD------------IKP------VA--GLRVYGFDKEEKIQS 61 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC------------ccc------cc--ccEEEeechHHHHHH
Confidence 78999998431112221 133333334557899988762 122 00 2123333444443 3
Q ss_pred hhcccCccceeeccCchhHHHHHHhCCcEEeccccc--------chhhhHHHHHHHhcceEEeec
Q 042731 346 ILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAA--------EQFYNSKLLEEEMGVCVEIAR 402 (481)
Q Consensus 346 ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~--------DQ~~na~~v~~~lG~G~~~~~ 402 (481)
+-..++ .+|+|+|.||+..++..++|.|++|-.. .|-.-|..+++. +.=+...+
T Consensus 62 li~dar--IVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~-~~vv~~sp 123 (161)
T COG5017 62 LIHDAR--IVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEI-NYVVACSP 123 (161)
T ss_pred Hhhcce--EEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhc-CceEEEcC
Confidence 444445 5999999999999999999999999743 578888888866 76666654
No 116
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.53 E-value=0.12 Score=51.50 Aligned_cols=79 Identities=20% Similarity=0.152 Sum_probs=52.4
Q ss_pred CCcEEEecccCHHH---hhcccCcccee------eccCc-hhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEee
Q 042731 332 GQGLVVHKWAPQVE---ILSHRSVSAFL------SHCGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIA 401 (481)
Q Consensus 332 ~~~~~v~~~ip~~~---ll~~~~v~~~I------~HGG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~ 401 (481)
..|+...+++|+.+ .+.++++..+- +.++. +.++|++++|+|+|+.+. ...++ . +.|..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~-~-~~~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRR-Y-EDEVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHh-h-cCcEEEe
Confidence 46899999999754 57777762221 22333 468999999999998753 22233 3 2233333
Q ss_pred ccCCcccCHHHHHHHHHHHhcCC
Q 042731 402 RGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 402 ~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
. -+++++.++|.+++.++
T Consensus 324 ~-----~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 A-----DDPEEFVAAIEKALLED 341 (373)
T ss_pred C-----CCHHHHHHHHHHHHhcC
Confidence 3 27999999999987655
No 117
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.50 E-value=0.055 Score=55.84 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=63.8
Q ss_pred CCcEEEecccCHHHhhcccCccceeecc---C-chhHHHHHHhCCcEEecccccchhhhHHHHHHH----hc-ceEEeec
Q 042731 332 GQGLVVHKWAPQVEILSHRSVSAFLSHC---G-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEE----MG-VCVEIAR 402 (481)
Q Consensus 332 ~~~~~v~~~ip~~~ll~~~~v~~~I~HG---G-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~----lG-~G~~~~~ 402 (481)
.+++.+.+...-.++++.+++ +|.-. | -.++.||+++|+|+|+.. .......+... +| .|..++.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd----~g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATD----VGSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECC----CCChHHHhcCCcccccCCceEEECC
Confidence 357777775555678888776 55332 3 368999999999999953 33334444431 12 6777765
Q ss_pred cCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 042731 403 GMSCEVLKEDLSAKIELVMNETEKGTDLRNKANE 436 (481)
Q Consensus 403 ~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~ 436 (481)
-+.+.++++|.++++|++..+.+.+++++
T Consensus 427 -----~d~~~la~ai~~ll~~~~~~~~~~~~a~~ 455 (475)
T cd03813 427 -----ADPEALARAILRLLKDPELRRAMGEAGRK 455 (475)
T ss_pred -----CCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 46899999999999998555555555554
No 118
>PLN02316 synthase/transferase
Probab=97.45 E-value=0.17 Score=56.20 Aligned_cols=119 Identities=6% Similarity=-0.027 Sum_probs=66.5
Q ss_pred CcEEEecccCHH---HhhcccCccceeecc---Cc-hhHHHHHHhCCcEEeccccc--chhhhH----HHHHHH--hcce
Q 042731 333 QGLVVHKWAPQV---EILSHRSVSAFLSHC---GW-NSVLEALSHGVPIIGWPLAA--EQFYNS----KLLEEE--MGVC 397 (481)
Q Consensus 333 ~~~~v~~~ip~~---~ll~~~~v~~~I~HG---G~-gt~~eal~~GvP~l~~P~~~--DQ~~na----~~v~~~--lG~G 397 (481)
..+.+....+.. .+++.+++ |+.-. |. .+.+||+++|+|.|+....+ |.-... ...+.. -+-|
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tG 977 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNG 977 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCce
Confidence 345554444443 46777775 77543 32 47899999999998865533 222111 000001 1457
Q ss_pred EEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHh
Q 042731 398 VEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFLNAALI 468 (481)
Q Consensus 398 ~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 468 (481)
...+. .+++.|..+|.+++.. |......+++..++.+ ...-|-.+.+++.++.+..
T Consensus 978 flf~~-----~d~~aLa~AL~raL~~------~~~~~~~~~~~~r~~m----~~dFSW~~~A~~Y~~LY~~ 1033 (1036)
T PLN02316 978 FSFDG-----ADAAGVDYALNRAISA------WYDGRDWFNSLCKRVM----EQDWSWNRPALDYMELYHS 1033 (1036)
T ss_pred EEeCC-----CCHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHH----HhhCCHHHHHHHHHHHHHH
Confidence 77754 4788999999999975 2223333444444443 3444445555566655544
No 119
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.07 E-value=0.0022 Score=53.51 Aligned_cols=127 Identities=20% Similarity=0.292 Sum_probs=67.2
Q ss_pred EEEEEcccccc-cCHHHHHH-HHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCH-H
Q 042731 268 VLYVSFGSQNT-IAASQMMQ-LAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQ-V 344 (481)
Q Consensus 268 ~V~vs~Gs~~~-~~~~~~~~-~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~-~ 344 (481)
+.++++|+... ...+.+.+ ++..+.+...++-+.+-+. -|+.+... . ..++.+.+|++. .
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~--------------~~~~l~~~-~--~~~v~~~g~~~e~~ 65 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGN--------------GPDELKRL-R--RPNVRFHGFVEELP 65 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECE--------------SS-HHCCH-H--HCTEEEE-S-HHHH
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeC--------------CHHHHHHh-c--CCCEEEcCCHHHHH
Confidence 45566666653 34454444 6666665433444333222 11111111 1 458888899865 3
Q ss_pred HhhcccCccceee--ccC-chhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHh
Q 042731 345 EILSHRSVSAFLS--HCG-WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVM 421 (481)
Q Consensus 345 ~ll~~~~v~~~I~--HGG-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl 421 (481)
++++.+++....+ +.| -+++.|++++|+|+|+.+.. ....++.. +.|..+ . -+++++.++|.+++
T Consensus 66 ~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~~-~~~~~~-~-----~~~~~l~~~i~~l~ 133 (135)
T PF13692_consen 66 EILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEED-GCGVLV-A-----NDPEELAEAIERLL 133 (135)
T ss_dssp HHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE--T-----T-HHHHHHHHHHHH
T ss_pred HHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheeec-CCeEEE-C-----CCHHHHHHHHHHHh
Confidence 5788888844433 223 37999999999999998761 22233334 788777 3 27999999999998
Q ss_pred cC
Q 042731 422 NE 423 (481)
Q Consensus 422 ~~ 423 (481)
+|
T Consensus 134 ~d 135 (135)
T PF13692_consen 134 ND 135 (135)
T ss_dssp H-
T ss_pred cC
Confidence 75
No 120
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.05 E-value=0.15 Score=53.68 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=51.8
Q ss_pred cEEEecccCHH-HhhcccCccceeecc---Cc-hhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCccc
Q 042731 334 GLVVHKWAPQV-EILSHRSVSAFLSHC---GW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEV 408 (481)
Q Consensus 334 ~~~v~~~ip~~-~ll~~~~v~~~I~HG---G~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~ 408 (481)
++.+.++.++. .++..+++ ||.-+ |. .+++||+++|+|+|+....+... +. . |.+..+. -
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~-~-g~nGll~------~ 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FR-S-FPNCLTY------K 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Ee-e-cCCeEec------C
Confidence 35556666655 48888776 76533 33 57889999999999987654322 22 2 3332232 2
Q ss_pred CHHHHHHHHHHHhcCC
Q 042731 409 LKEDLSAKIELVMNET 424 (481)
Q Consensus 409 ~~~~l~~~i~~vl~~~ 424 (481)
+.+.+.++|.++|+++
T Consensus 667 D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 667 TSEDFVAKVKEALANE 682 (794)
T ss_pred CHHHHHHHHHHHHhCc
Confidence 5899999999999987
No 121
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.90 E-value=0.11 Score=46.78 Aligned_cols=50 Identities=20% Similarity=0.188 Sum_probs=34.6
Q ss_pred CCcEEEecccCH-H---HhhcccCccceeeccC----chhHHHHHHhCCcEEecccccch
Q 042731 332 GQGLVVHKWAPQ-V---EILSHRSVSAFLSHCG----WNSVLEALSHGVPIIGWPLAAEQ 383 (481)
Q Consensus 332 ~~~~~v~~~ip~-~---~ll~~~~v~~~I~HGG----~gt~~eal~~GvP~l~~P~~~DQ 383 (481)
..++.+.++++. . .++..+++ +|+-.. -+++.||+++|+|+|+.+....+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 456777777632 1 23433555 777765 58999999999999998775533
No 122
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.82 E-value=0.45 Score=44.77 Aligned_cols=101 Identities=20% Similarity=0.169 Sum_probs=69.1
Q ss_pred CChHHHHHHHHHHHhCCCCEEEEEeCCc--chhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchH-HHHH
Q 042731 4 GHIIPFLALARRLEETNKYTITLVNTPL--NLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFP-KFLQ 80 (481)
Q Consensus 4 GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~ 80 (481)
-|+--+-.|-++|.+ +||+|.+.+-+. ..+.+.. -|+.+..+.-. + ...+. ++..
T Consensus 11 ~hvhfFk~lI~elek-kG~ev~iT~rd~~~v~~LLd~-----ygf~~~~Igk~----g------------~~tl~~Kl~~ 68 (346)
T COG1817 11 PHVHFFKNLIWELEK-KGHEVLITCRDFGVVTELLDL-----YGFPYKSIGKH----G------------GVTLKEKLLE 68 (346)
T ss_pred chhhHHHHHHHHHHh-CCeEEEEEEeecCcHHHHHHH-----hCCCeEeeccc----C------------CccHHHHHHH
Confidence 367778889999999 999999888542 2334444 56666666521 1 00011 2222
Q ss_pred HHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechh
Q 042731 81 ASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGG 135 (481)
Q Consensus 81 ~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~ 135 (481)
.. ...-.+.+++.++ +||+.+. -.++.+..+|.-+|+|.+.+.-..
T Consensus 69 ~~-eR~~~L~ki~~~~-------kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 69 SA-ERVYKLSKIIAEF-------KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred HH-HHHHHHHHHHhhc-------CCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 22 2233567888999 9999999 578899999999999999987543
No 123
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.70 E-value=0.96 Score=46.87 Aligned_cols=73 Identities=21% Similarity=0.198 Sum_probs=49.0
Q ss_pred CcEEEecccCHH-HhhcccCccceeec---cCc-hhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcc
Q 042731 333 QGLVVHKWAPQV-EILSHRSVSAFLSH---CGW-NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCE 407 (481)
Q Consensus 333 ~~~~v~~~ip~~-~ll~~~~v~~~I~H---GG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~ 407 (481)
+++.+.+|..+. .+|..+++ ||.. -|+ +++.||+++|+|+|+... ..+...+.+. ..|..++. .
T Consensus 455 d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~---~- 523 (578)
T PRK15490 455 ERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDD---A- 523 (578)
T ss_pred CcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECC---C-
Confidence 678888886653 57888776 7753 454 589999999999998754 3445555544 57777765 2
Q ss_pred cCHHHHHHHH
Q 042731 408 VLKEDLSAKI 417 (481)
Q Consensus 408 ~~~~~l~~~i 417 (481)
+.+.+.+++
T Consensus 524 -D~~aLa~ai 532 (578)
T PRK15490 524 -QTVNLDQAC 532 (578)
T ss_pred -ChhhHHHHH
Confidence 344455444
No 124
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.54 E-value=0.8 Score=44.17 Aligned_cols=40 Identities=23% Similarity=0.328 Sum_probs=33.1
Q ss_pred cCHHHhhcccCccceeeccCchhHHHHHHhCCcEEeccccc
Q 042731 341 APQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAA 381 (481)
Q Consensus 341 ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~ 381 (481)
=|+..+|+.++. .+||---.+=++||+..|+|+.++|...
T Consensus 220 nPy~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 220 NPYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred CcHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 356788888886 6677777788899999999999999876
No 125
>PRK10125 putative glycosyl transferase; Provisional
Probab=96.47 E-value=1.1 Score=45.10 Aligned_cols=71 Identities=20% Similarity=0.155 Sum_probs=44.1
Q ss_pred cEEEecccC-H---HHhhcccCccceeeccC----chhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCC
Q 042731 334 GLVVHKWAP-Q---VEILSHRSVSAFLSHCG----WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMS 405 (481)
Q Consensus 334 ~~~v~~~ip-~---~~ll~~~~v~~~I~HGG----~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~ 405 (481)
++...++.. + ..+++.+++ ||.-.= -.+++||+++|+|+|+....+ -++ .+. . +-|..++.
T Consensus 287 ~v~~~g~~~~~~~l~~~y~~aDv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG-~~E---iv~-~-~~G~lv~~--- 355 (405)
T PRK10125 287 NVVNHGFETDKRKLMSALNQMDA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA-ARE---VLQ-K-SGGKTVSE--- 355 (405)
T ss_pred ceEEecCcCCHHHHHHHHHhCCE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC-hHH---hEe-C-CcEEEECC---
Confidence 344445543 2 345555665 665432 358899999999999997765 222 222 4 56888876
Q ss_pred cccCHHHHHHHH
Q 042731 406 CEVLKEDLSAKI 417 (481)
Q Consensus 406 ~~~~~~~l~~~i 417 (481)
. +.+.|++.+
T Consensus 356 ~--d~~~La~~~ 365 (405)
T PRK10125 356 E--EVLQLAQLS 365 (405)
T ss_pred C--CHHHHHhcc
Confidence 3 567777643
No 126
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.30 E-value=0.063 Score=54.72 Aligned_cols=128 Identities=20% Similarity=0.293 Sum_probs=82.4
Q ss_pred CCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHH
Q 042731 265 YTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQV 344 (481)
Q Consensus 265 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~ 344 (481)
...+||.+|--....+++.+...++-|...+..++|..+.+-.=|.+ + ....+.....++.+++.+-+...
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~r--------f-~ty~~~~Gl~p~riifs~va~k~ 827 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQR--------F-RTYAEQLGLEPDRIIFSPVAAKE 827 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHH--------H-HHHHHHhCCCccceeeccccchH
Confidence 45689999988888899999999999999999999999877310110 0 01111111224555554444432
Q ss_pred H-----hhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeec
Q 042731 345 E-----ILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIAR 402 (481)
Q Consensus 345 ~-----ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~ 402 (481)
+ .|..-.++-..|. |+.|.++.|+.|||||..|...--...|.-.--.+|+|..+.+
T Consensus 828 eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak 889 (966)
T KOG4626|consen 828 EHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK 889 (966)
T ss_pred HHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh
Confidence 2 1111112335555 6789999999999999999876555555444446699986655
No 127
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.15 E-value=0.033 Score=54.55 Aligned_cols=95 Identities=16% Similarity=0.349 Sum_probs=69.2
Q ss_pred CCcEEEecccCHHHhh---cccCccceeecc--------Cc------hhHHHHHHhCCcEEecccccchhhhHHHHHHHh
Q 042731 332 GQGLVVHKWAPQVEIL---SHRSVSAFLSHC--------GW------NSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEM 394 (481)
Q Consensus 332 ~~~~~v~~~ip~~~ll---~~~~v~~~I~HG--------G~------gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~l 394 (481)
..++...+|+|+.++. .. +. ++|.-+ .+ +-+.+.+++|+|+|+. ++...+..+++.
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~-gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~- 278 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GF-GLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN- 278 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-Cc-CeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-
Confidence 5688888999997654 33 33 233221 11 2377889999999986 456677888878
Q ss_pred cceEEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 042731 395 GVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIK 442 (481)
Q Consensus 395 G~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~ 442 (481)
++|+.++. .+++.+++.++. + ++.+.|++|++++++.++
T Consensus 279 ~~G~~v~~-------~~el~~~l~~~~-~-~~~~~m~~n~~~~~~~~~ 317 (333)
T PRK09814 279 GLGFVVDS-------LEELPEIIDNIT-E-EEYQEMVENVKKISKLLR 317 (333)
T ss_pred CceEEeCC-------HHHHHHHHHhcC-H-HHHHHHHHHHHHHHHHHh
Confidence 99999863 568888888753 3 356689999999999996
No 128
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.10 E-value=1.9 Score=43.66 Aligned_cols=167 Identities=13% Similarity=0.190 Sum_probs=91.8
Q ss_pred hhhhcCCCCCeEEEEEccccccc------C----HHHHHHHHHHHHhcCCceEEEEcCCCCCC--CcchhhhcCCCchhH
Q 042731 257 KKWLDTKPYTSVLYVSFGSQNTI------A----ASQMMQLAMALEASGKNFIWVVRPPIGFD--INSEFKANKWLPRGF 324 (481)
Q Consensus 257 ~~~l~~~~~~~~V~vs~Gs~~~~------~----~~~~~~~~~al~~~~~~~i~~~~~~~~~~--~~~~~~~~~~l~~~~ 324 (481)
..|+...+.+++|-|+....... . .+.+.++++.+...|++++++.-.. +++ ..++.. .-..+
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~-~~~~~~~dD~~----~~~~l 299 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCT-GIDSYNKDDRM----VALNL 299 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEeccc-CccCCCCchHH----HHHHH
Confidence 34554333455787776543211 1 1334456666666788877664221 000 001111 11233
Q ss_pred HHHhccCCCc-EEEec-ccCHH--HhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEE-
Q 042731 325 EERIKCSGQG-LVVHK-WAPQV--EILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVE- 399 (481)
Q Consensus 325 ~~~~~~~~~~-~~v~~-~ip~~--~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~- 399 (481)
.+.++. +.. .++.+ +-+.. .+++++++ +|..== -++.-|+..|||.+.+++. +.....+. .+|....
T Consensus 300 ~~~~~~-~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~Rl-Ha~I~a~~~gvP~i~i~Y~---~K~~~~~~-~lg~~~~~ 371 (426)
T PRK10017 300 RQHVSD-PARYHVVMDELNDLEMGKILGACEL--TVGTRL-HSAIISMNFGTPAIAINYE---HKSAGIMQ-QLGLPEMA 371 (426)
T ss_pred HHhccc-ccceeEecCCCChHHHHHHHhhCCE--EEEecc-hHHHHHHHcCCCEEEeeeh---HHHHHHHH-HcCCccEE
Confidence 344331 222 22222 33333 67777664 665432 3455689999999999883 44455555 4488766
Q ss_pred eeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 042731 400 IARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIK 442 (481)
Q Consensus 400 ~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~ 442 (481)
.+. ..++.+.|.+.+.++++|.+ .+++..++--+.++
T Consensus 372 ~~~---~~l~~~~Li~~v~~~~~~r~---~~~~~l~~~v~~~r 408 (426)
T PRK10017 372 IDI---RHLLDGSLQAMVADTLGQLP---ALNARLAEAVSRER 408 (426)
T ss_pred ech---hhCCHHHHHHHHHHHHhCHH---HHHHHHHHHHHHHH
Confidence 566 78899999999999999862 35555444444444
No 129
>PRK14098 glycogen synthase; Provisional
Probab=96.00 E-value=0.23 Score=51.43 Aligned_cols=133 Identities=13% Similarity=0.054 Sum_probs=76.2
Q ss_pred EEEEEccccccc-CHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHH--
Q 042731 268 VLYVSFGSQNTI-AASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQV-- 344 (481)
Q Consensus 268 ~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~-- 344 (481)
.+++..|..... ..+.+.+.+..+...+.+++++ |.+. ...-+.+++..+..+.++.+..+++..
T Consensus 308 ~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lviv-G~G~-----------~~~~~~l~~l~~~~~~~V~~~g~~~~~~~ 375 (489)
T PRK14098 308 PLVGVIINFDDFQGAELLAESLEKLVELDIQLVIC-GSGD-----------KEYEKRFQDFAEEHPEQVSVQTEFTDAFF 375 (489)
T ss_pred CEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEE-eCCC-----------HHHHHHHHHHHHHCCCCEEEEEecCHHHH
Confidence 456666776543 2444444444444445555444 3321 001133444333335678787888874
Q ss_pred -HhhcccCccceeecc---Cc-hhHHHHHHhCCcEEeccccc--chhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHH
Q 042731 345 -EILSHRSVSAFLSHC---GW-NSVLEALSHGVPIIGWPLAA--EQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKI 417 (481)
Q Consensus 345 -~ll~~~~v~~~I~HG---G~-gt~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i 417 (481)
.+++.+++ ++... |. .+.+||+++|+|.|+....+ |.-.+ ...+. +.|..++. -+++.|+++|
T Consensus 376 ~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~-~~G~l~~~-----~d~~~la~ai 445 (489)
T PRK14098 376 HLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDK-GSGFIFHD-----YTPEALVAKL 445 (489)
T ss_pred HHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCC-CceeEeCC-----CCHHHHHHHH
Confidence 57777776 66543 22 37789999999988876543 22111 11113 66777764 4689999999
Q ss_pred HHHhc
Q 042731 418 ELVMN 422 (481)
Q Consensus 418 ~~vl~ 422 (481)
.+++.
T Consensus 446 ~~~l~ 450 (489)
T PRK14098 446 GEALA 450 (489)
T ss_pred HHHHH
Confidence 98763
No 130
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.2 Score=50.97 Aligned_cols=138 Identities=20% Similarity=0.235 Sum_probs=88.8
Q ss_pred CCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCH
Q 042731 264 PYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQ 343 (481)
Q Consensus 264 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~ 343 (481)
|++-+||+||+......++.+..-+.-++..+..++|..+++. +.++.. .-.+.-++-....+.+++.+-.|.
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~----~~~~~~---~l~~la~~~Gv~~eRL~f~p~~~~ 499 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGD----DAEINA---RLRDLAEREGVDSERLRFLPPAPN 499 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCC----cHHHHH---HHHHHHHHcCCChhheeecCCCCC
Confidence 4577999999999998999998888888889999999988752 111111 011111222222445566555554
Q ss_pred HH---hhcccCcccee---eccCchhHHHHHHhCCcEEecccccchhh--hHHHHHHHhcceEEeeccCCcccCHHHHHH
Q 042731 344 VE---ILSHRSVSAFL---SHCGWNSVLEALSHGVPIIGWPLAAEQFY--NSKLLEEEMGVCVEIARGMSCEVLKEDLSA 415 (481)
Q Consensus 344 ~~---ll~~~~v~~~I---~HGG~gt~~eal~~GvP~l~~P~~~DQ~~--na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ 415 (481)
.. =+..+++ |. --||+.|..|+|.+|||+|..+ ++|+- |+.-+...+|+-..+-. -.++-+..
T Consensus 500 ~~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~-----s~~dYV~~ 570 (620)
T COG3914 500 EDHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVAD-----SRADYVEK 570 (620)
T ss_pred HHHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcC-----CHHHHHHH
Confidence 43 2333443 44 3689999999999999999874 56654 55555544466555543 23566677
Q ss_pred HH
Q 042731 416 KI 417 (481)
Q Consensus 416 ~i 417 (481)
+|
T Consensus 571 av 572 (620)
T COG3914 571 AV 572 (620)
T ss_pred HH
Confidence 66
No 131
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.84 E-value=0.01 Score=50.53 Aligned_cols=95 Identities=15% Similarity=0.195 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhhhhH
Q 042731 8 PFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQASASLEP 87 (481)
Q Consensus 8 P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (481)
-+..|+++|.+ +||+|++++.......-+.. . .++++..++.+... . .. .. . ....
T Consensus 6 ~~~~l~~~L~~-~G~~V~v~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~-------~-----~~---~~-~----~~~~ 61 (160)
T PF13579_consen 6 YVRELARALAA-RGHEVTVVTPQPDPEDDEEE-E--DGVRVHRLPLPRRP-------W-----PL---RL-L----RFLR 61 (160)
T ss_dssp HHHHHHHHHHH-TT-EEEEEEE---GGG-SEE-E--TTEEEEEE--S-SS-------S-----GG---GH-C----CHHH
T ss_pred HHHHHHHHHHH-CCCEEEEEecCCCCcccccc-c--CCceEEeccCCccc-------h-----hh---hh-H----HHHH
Confidence 35789999999 99999999975544422111 1 67888877754110 0 00 00 0 0112
Q ss_pred HHHHHH--HHHhhccCCCCccEEEeCCCCc-hHHHHHH-HhCCceEEEec
Q 042731 88 HFKKLI--SELVNEQNGQKPLCIITDTFLG-WCKETAQ-EYGIFHAIFIG 133 (481)
Q Consensus 88 ~~~~ll--~~~~~~~~~~~pD~vI~D~~~~-~~~~~A~-~lgiP~v~~~~ 133 (481)
.+.+++ ++. +||+|.+..... +...+++ ..++|++....
T Consensus 62 ~~~~~l~~~~~-------~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 62 RLRRLLAARRE-------RPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHHHHCHHCT----------SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHHHHHhhhcc-------CCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 334444 333 899999886332 3344555 78999998654
No 132
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=95.49 E-value=0.15 Score=42.61 Aligned_cols=90 Identities=16% Similarity=0.241 Sum_probs=58.8
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCcchhhhh-hcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhhhhH
Q 042731 9 FLALARRLEETNKYTITLVNTPLNLKKLK-SSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQASASLEP 87 (481)
Q Consensus 9 ~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (481)
...+++.|++ +||+|++++.....+... . .++.+..++.+ . ... ..+. . ..
T Consensus 13 ~~~~~~~L~~-~g~~V~ii~~~~~~~~~~~~-----~~i~~~~~~~~------~-------k~~----~~~~---~-~~- 64 (139)
T PF13477_consen 13 IYNLAKELKK-RGYDVHIITPRNDYEKYEII-----EGIKVIRLPSP------R-------KSP----LNYI---K-YF- 64 (139)
T ss_pred HHHHHHHHHH-CCCEEEEEEcCCCchhhhHh-----CCeEEEEecCC------C-------Ccc----HHHH---H-HH-
Confidence 5678999999 999999999865532222 3 67888777531 0 000 1111 1 22
Q ss_pred HHHHHHHHHhhccCCCCccEEEeCCCCc---hHHHHHHHhC-CceEEEec
Q 042731 88 HFKKLISELVNEQNGQKPLCIITDTFLG---WCKETAQEYG-IFHAIFIG 133 (481)
Q Consensus 88 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~---~~~~~A~~lg-iP~v~~~~ 133 (481)
.+..++++. +||+|.+..... .+..++...| +|.+....
T Consensus 65 ~l~k~ik~~-------~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 65 RLRKIIKKE-------KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HHHHHhccC-------CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 557888888 999998886554 2335566788 89886443
No 133
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.34 E-value=0.86 Score=44.21 Aligned_cols=134 Identities=13% Similarity=0.058 Sum_probs=73.1
Q ss_pred CeEEEEEcccc-cc--cCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecc--
Q 042731 266 TSVLYVSFGSQ-NT--IAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKW-- 340 (481)
Q Consensus 266 ~~~V~vs~Gs~-~~--~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~-- 340 (481)
++.|.+.-|+. .. .+.+.+.++++.+...+.++++..+... +- ...+.+.+... .. .+.+-
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~------e~----~~~~~i~~~~~--~~--~l~g~~s 244 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDA------EK----QRAERIAEALP--GA--VVLPKMS 244 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHH------HH----HHHHHHHhhCC--CC--eecCCCC
Confidence 44555555553 32 4578899999999877777776655431 10 01122222111 11 22222
Q ss_pred cCH-HHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEe-eccCCcccCHHHHHHHHH
Q 042731 341 APQ-VEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEI-ARGMSCEVLKEDLSAKIE 418 (481)
Q Consensus 341 ip~-~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~-~~~~~~~~~~~~l~~~i~ 418 (481)
+++ ..++.++++ +|+.- .|.+.=|.+.|+|+|++ +.... ..+-. -+|-...+ .......++++++.++|.
T Consensus 245 L~el~ali~~a~l--~I~~D-Sgp~HlAaa~g~P~i~l-fg~t~---p~~~~-P~~~~~~~~~~~~~~~I~~~~V~~ai~ 316 (319)
T TIGR02193 245 LAEVAALLAGADA--VVGVD-TGLTHLAAALDKPTVTL-YGATD---PGRTG-GYGKPNVALLGESGANPTPDEVLAALE 316 (319)
T ss_pred HHHHHHHHHcCCE--EEeCC-ChHHHHHHHcCCCEEEE-ECCCC---Hhhcc-cCCCCceEEccCccCCCCHHHHHHHHH
Confidence 333 468888775 88874 57888899999999876 21111 11100 00111100 011136789999999998
Q ss_pred HHh
Q 042731 419 LVM 421 (481)
Q Consensus 419 ~vl 421 (481)
++|
T Consensus 317 ~~~ 319 (319)
T TIGR02193 317 ELL 319 (319)
T ss_pred hhC
Confidence 765
No 134
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.16 E-value=0.2 Score=38.56 Aligned_cols=67 Identities=21% Similarity=0.206 Sum_probs=43.3
Q ss_pred ccCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 042731 358 HCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANE 436 (481)
Q Consensus 358 HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~ 436 (481)
+|-...+.|++++|+|+|.-+. +.... .+.-|...-. -. +.+++.++|..+++|+++.+++++++.+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~----~~~~~~~~~~---~~-~~~el~~~i~~ll~~~~~~~~ia~~a~~ 75 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLRE----IFEDGEHIIT---YN-DPEELAEKIEYLLENPEERRRIAKNARE 75 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHH----HcCCCCeEEE---EC-CHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 4555689999999999999855 22221 2222322222 22 7999999999999998444444444433
No 135
>PHA01633 putative glycosyl transferase group 1
Probab=94.54 E-value=2 Score=41.82 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=59.4
Q ss_pred CCcEEEe---cccCHH---HhhcccCccceeecc---Cc-hhHHHHHHhCCcEEecccc------cch------hhhHHH
Q 042731 332 GQGLVVH---KWAPQV---EILSHRSVSAFLSHC---GW-NSVLEALSHGVPIIGWPLA------AEQ------FYNSKL 389 (481)
Q Consensus 332 ~~~~~v~---~~ip~~---~ll~~~~v~~~I~HG---G~-gt~~eal~~GvP~l~~P~~------~DQ------~~na~~ 389 (481)
..++.+. +++++. .++..+++ ||.-+ |+ .+++||+++|+|+|+.-.. +|+ ..+...
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 4466665 455543 56777775 77543 44 4788999999999986432 232 222222
Q ss_pred HH--HHhcceEEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 042731 390 LE--EEMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVII 441 (481)
Q Consensus 390 v~--~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~ 441 (481)
.. .. |.|..++ ..+++.++++|.+++... ..+....++++.++.+
T Consensus 278 ~~~~~~-g~g~~~~-----~~d~~~la~ai~~~~~~~-~~~~~~~~~~~~a~~f 324 (335)
T PHA01633 278 YYDKEH-GQKWKIH-----KFQIEDMANAIILAFELQ-DREERSMKLKELAKKY 324 (335)
T ss_pred hcCccc-Cceeeec-----CCCHHHHHHHHHHHHhcc-ChhhhhHHHHHHHHhc
Confidence 22 24 5666654 368999999999995543 1112334444444443
No 136
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=94.53 E-value=5.2 Score=39.23 Aligned_cols=98 Identities=12% Similarity=0.037 Sum_probs=61.0
Q ss_pred CCCChHHHHHHHHHHHhC-CCCEEEEEeCCcchhhhhhcCCCCCCeE-EEEecCCCCCCCCCCCCCCCCCCCCCchHHHH
Q 042731 2 AQGHIIPFLALARRLEET-NKYTITLVNTPLNLKKLKSSLPQNSSIH-LLEIPFNSVEHDLPPCTENTDSIPYHLFPKFL 79 (481)
Q Consensus 2 ~~GHv~P~l~LA~~L~~~-~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (481)
+.|++.=..++.+.|+++ .+.+|++++.+.+.+.++.. +.++ ++.++.. .. . ...
T Consensus 9 ~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----p~vd~vi~~~~~-----------~~-~------~~~- 65 (344)
T TIGR02201 9 HHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN----PDINALYGLDRK-----------KA-K------AGE- 65 (344)
T ss_pred cccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC----CCccEEEEeChh-----------hh-c------chH-
Confidence 468888999999999997 68999999999887777652 3333 2322210 00 0 000
Q ss_pred HHHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEE
Q 042731 80 QASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAI 130 (481)
Q Consensus 80 ~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~ 130 (481)
.... .+.++++.+... ++|++|.-........++...|+|.-+
T Consensus 66 ~~~~----~~~~l~~~lr~~----~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 66 RKLA----NQFHLIKVLRAN----RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred HHHH----HHHHHHHHHHhC----CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 0111 112333333322 899999765555677888888999765
No 137
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=93.81 E-value=0.074 Score=41.44 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=45.3
Q ss_pred ChhhhhhhhcCCCCCeEEEEEccccccc---CH--HHHHHHHHHHHhcCCceEEEEcCC
Q 042731 252 STELCKKWLDTKPYTSVLYVSFGSQNTI---AA--SQMMQLAMALEASGKNFIWVVRPP 305 (481)
Q Consensus 252 ~~~~~~~~l~~~~~~~~V~vs~Gs~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~ 305 (481)
.+..+..|+...+.++.|.||+||.... .. ..+..++++++..+..+|+.+...
T Consensus 26 G~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 26 GPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 4566788999989999999999999753 22 478889999999999999999765
No 138
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=93.23 E-value=0.32 Score=41.91 Aligned_cols=96 Identities=19% Similarity=0.129 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhhhh
Q 042731 7 IPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQASASLE 86 (481)
Q Consensus 7 ~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (481)
.-++.|+++|++ +||+|+++++....... .. ....... .... ... ..... ....
T Consensus 16 ~~~~~l~~~l~~-~G~~v~v~~~~~~~~~~-------~~-~~~~~~~------~~~~-----~~~-----~~~~~-~~~~ 69 (177)
T PF13439_consen 16 RVVLNLARALAK-RGHEVTVVSPGVKDPIE-------EE-LVKIFVK------IPYP-----IRK-----RFLRS-FFFM 69 (177)
T ss_dssp HHHHHHHHHHHH-TT-EEEEEESS-TTS-S-------ST-EEEE---------TT-S-----STS-----S--HH-HHHH
T ss_pred HHHHHHHHHHHH-CCCEEEEEEcCCCccch-------hh-ccceeee------eecc-----ccc-----ccchh-HHHH
Confidence 346789999999 99999999865332111 11 0111010 0000 000 00011 1123
Q ss_pred HHHHHHHHHHhhccCCCCccEEEeCCCCc-hHHHHHHHhCCceEEEechhH
Q 042731 87 PHFKKLISELVNEQNGQKPLCIITDTFLG-WCKETAQEYGIFHAIFIGGGG 136 (481)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 136 (481)
..+.+++++. +||+|-+..... +....+-. ++|.+.......
T Consensus 70 ~~~~~~i~~~-------~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~ 112 (177)
T PF13439_consen 70 RRLRRLIKKE-------KPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPY 112 (177)
T ss_dssp HHHHHHHHHH-------T-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH
T ss_pred HHHHHHHHHc-------CCCeEEecccchhHHHHHhcc-CCCEEEEeCCCc
Confidence 4557788888 999995554332 33333434 999998877554
No 139
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=92.80 E-value=13 Score=38.18 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=47.5
Q ss_pred EecccCHHH---hhcccCccceee---ccCch-hHHHHHHhCCc----EEecccccchhhhHHHHHHHhcceEEeeccCC
Q 042731 337 VHKWAPQVE---ILSHRSVSAFLS---HCGWN-SVLEALSHGVP----IIGWPLAAEQFYNSKLLEEEMGVCVEIARGMS 405 (481)
Q Consensus 337 v~~~ip~~~---ll~~~~v~~~I~---HGG~g-t~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~ 405 (481)
+.+++++.+ ++..+++ +|. +-|+| ++.||+++|+| +|+.-..+- + + .+.-|+.+++
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~----~---~-~~~~g~lv~p--- 411 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA----A---E-ELSGALLVNP--- 411 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccc----h---h-hcCCCEEECC---
Confidence 346777754 5777776 553 44654 67899999999 544422221 1 1 0134666655
Q ss_pred cccCHHHHHHHHHHHhcCC
Q 042731 406 CEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 406 ~~~~~~~l~~~i~~vl~~~ 424 (481)
.+.+.++++|.++++++
T Consensus 412 --~d~~~la~ai~~~l~~~ 428 (460)
T cd03788 412 --YDIDEVADAIHRALTMP 428 (460)
T ss_pred --CCHHHHHHHHHHHHcCC
Confidence 46899999999999977
No 140
>PHA01630 putative group 1 glycosyl transferase
Probab=92.08 E-value=5.5 Score=38.88 Aligned_cols=77 Identities=16% Similarity=0.079 Sum_probs=45.0
Q ss_pred cccCHH---HhhcccCccceee---ccC-chhHHHHHHhCCcEEeccccc--chhh---hHHHHHH-----------Hhc
Q 042731 339 KWAPQV---EILSHRSVSAFLS---HCG-WNSVLEALSHGVPIIGWPLAA--EQFY---NSKLLEE-----------EMG 395 (481)
Q Consensus 339 ~~ip~~---~ll~~~~v~~~I~---HGG-~gt~~eal~~GvP~l~~P~~~--DQ~~---na~~v~~-----------~lG 395 (481)
.++++. .++..+++ +|. ..| -.++.||+++|+|+|+....+ |.-. |+-.+.. . +
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~-~ 272 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPI-H 272 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCc-c
Confidence 346654 36777776 552 333 358899999999999976533 2211 1111100 1 2
Q ss_pred ceEEeeccCCcccCHHHHHHHHHHHhcCC
Q 042731 396 VCVEIARGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 396 ~G~~~~~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
+|..+.. +.+.+.+++.+++.|+
T Consensus 273 ~G~~v~~------~~~~~~~~ii~~l~~~ 295 (331)
T PHA01630 273 VGYFLDP------DIEDAYQKLLEALANW 295 (331)
T ss_pred cccccCC------CHHHHHHHHHHHHhCC
Confidence 3443332 5778888888888874
No 141
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=91.97 E-value=2.1 Score=37.19 Aligned_cols=30 Identities=13% Similarity=-0.032 Sum_probs=25.4
Q ss_pred CccEEEeCCCCchHHHHHHHh-CCceEEEec
Q 042731 104 KPLCIITDTFLGWCKETAQEY-GIFHAIFIG 133 (481)
Q Consensus 104 ~pD~vI~D~~~~~~~~~A~~l-giP~v~~~~ 133 (481)
.||+||+.+-+..+..+-+.+ ++|.+.+.-
T Consensus 66 ~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 66 VPDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred CCCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 689999998877888888888 999998653
No 142
>PRK14099 glycogen synthase; Provisional
Probab=91.07 E-value=6.9 Score=40.47 Aligned_cols=112 Identities=12% Similarity=0.101 Sum_probs=58.3
Q ss_pred EEecccCHH-Hhh-cccCccceee---ccCch-hHHHHHHhCCcEEeccccc--chhhhHHH---HHHHhcceEEeeccC
Q 042731 336 VVHKWAPQV-EIL-SHRSVSAFLS---HCGWN-SVLEALSHGVPIIGWPLAA--EQFYNSKL---LEEEMGVCVEIARGM 404 (481)
Q Consensus 336 ~v~~~ip~~-~ll-~~~~v~~~I~---HGG~g-t~~eal~~GvP~l~~P~~~--DQ~~na~~---v~~~lG~G~~~~~~~ 404 (481)
.+.+|-... .++ +.+++ ||. +=|.| +.+||+++|+|.|+....+ |--....- .+.. +.|..++.
T Consensus 354 ~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l~~~-- 428 (485)
T PRK14099 354 VVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQFSP-- 428 (485)
T ss_pred EEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEEeCC--
Confidence 455663332 233 33554 665 34443 6789999998777654322 21111100 0001 35777765
Q ss_pred CcccCHHHHHHHHHH---HhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHhh
Q 042731 405 SCEVLKEDLSAKIEL---VMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFLNAALIM 469 (481)
Q Consensus 405 ~~~~~~~~l~~~i~~---vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~ 469 (481)
-+++.|+++|.+ +++|++..+.+.++++ ...-|-.+.+++.++.+++.
T Consensus 429 ---~d~~~La~ai~~a~~l~~d~~~~~~l~~~~~--------------~~~fSw~~~a~~y~~lY~~l 479 (485)
T PRK14099 429 ---VTADALAAALRKTAALFADPVAWRRLQRNGM--------------TTDVSWRNPAQHYAALYRSL 479 (485)
T ss_pred ---CCHHHHHHHHHHHHHHhcCHHHHHHHHHHhh--------------hhcCChHHHHHHHHHHHHHH
Confidence 478999999987 5666633333333332 11334455556666555443
No 143
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=89.26 E-value=9.8 Score=38.68 Aligned_cols=80 Identities=14% Similarity=0.192 Sum_probs=56.9
Q ss_pred CcEEEe-cccC-H-HHhhcccCccceeeccC--chhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcc
Q 042731 333 QGLVVH-KWAP-Q-VEILSHRSVSAFLSHCG--WNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCE 407 (481)
Q Consensus 333 ~~~~v~-~~ip-~-~~ll~~~~v~~~I~HGG--~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~ 407 (481)
.|++.. ++.+ . .+++..+++-+-|+||. ..++.||+.+|+|++..-...... ..+. . |.....
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i~---~-g~l~~~----- 395 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFIA---S-ENIFEH----- 395 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---cccc---C-CceecC-----
Confidence 455544 4566 3 57999999988999987 479999999999999985442211 1122 1 333333
Q ss_pred cCHHHHHHHHHHHhcCC
Q 042731 408 VLKEDLSAKIELVMNET 424 (481)
Q Consensus 408 ~~~~~l~~~i~~vl~~~ 424 (481)
-+.++|.++|.++|+++
T Consensus 396 ~~~~~m~~~i~~lL~d~ 412 (438)
T TIGR02919 396 NEVDQLISKLKDLLNDP 412 (438)
T ss_pred CCHHHHHHHHHHHhcCH
Confidence 35899999999999998
No 144
>PLN02939 transferase, transferring glycosyl groups
Probab=89.26 E-value=13 Score=41.16 Aligned_cols=83 Identities=11% Similarity=0.120 Sum_probs=52.2
Q ss_pred CcEEEecccCHH---HhhcccCccceeecc---Cc-hhHHHHHHhCCcEEeccccc--chhhh--HHHHHHHhcceEEee
Q 042731 333 QGLVVHKWAPQV---EILSHRSVSAFLSHC---GW-NSVLEALSHGVPIIGWPLAA--EQFYN--SKLLEEEMGVCVEIA 401 (481)
Q Consensus 333 ~~~~v~~~ip~~---~ll~~~~v~~~I~HG---G~-gt~~eal~~GvP~l~~P~~~--DQ~~n--a~~v~~~lG~G~~~~ 401 (481)
++|.+..+.+.. .+++.+++ ||.-. |. .+++||+++|+|.|+....+ |--.+ ...+...-+-|....
T Consensus 837 drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~ 914 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFL 914 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEec
Confidence 467777777764 47877776 77542 32 47899999999999876543 22111 111111114566665
Q ss_pred ccCCcccCHHHHHHHHHHHhc
Q 042731 402 RGMSCEVLKEDLSAKIELVMN 422 (481)
Q Consensus 402 ~~~~~~~~~~~l~~~i~~vl~ 422 (481)
. .+++.|.++|.+++.
T Consensus 915 ~-----~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 915 T-----PDEQGLNSALERAFN 930 (977)
T ss_pred C-----CCHHHHHHHHHHHHH
Confidence 4 378889998888775
No 145
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=88.61 E-value=1.6 Score=38.74 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=48.9
Q ss_pred CCCChHHHHHHHHHHHhC-CCCEEEEEeCCc-chhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHH
Q 042731 2 AQGHIIPFLALARRLEET-NKYTITLVNTPL-NLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFL 79 (481)
Q Consensus 2 ~~GHv~P~l~LA~~L~~~-~Gh~Vt~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (481)
+.|-++-...|+++|+++ .|+.|.+-++.. ..+.+.+... ..+....+|++
T Consensus 30 SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~--~~v~~~~~P~D------------------------- 82 (186)
T PF04413_consen 30 SVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP--DRVDVQYLPLD------------------------- 82 (186)
T ss_dssp SHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G--GG-SEEE---S-------------------------
T ss_pred CHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC--CCeEEEEeCcc-------------------------
Confidence 346788899999999993 399999888743 3333443221 23333334532
Q ss_pred HHHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCc--hHHHHHHHhCCceEEEec
Q 042731 80 QASASLEPHFKKLISELVNEQNGQKPLCIITDTFLG--WCKETAQEYGIFHAIFIG 133 (481)
Q Consensus 80 ~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~--~~~~~A~~lgiP~v~~~~ 133 (481)
....++.+++.+ +||++|.--.-. -....|++.|||.+.+..
T Consensus 83 -----~~~~~~rfl~~~-------~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 -----FPWAVRRFLDHW-------RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp -----SHHHHHHHHHHH---------SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred -----CHHHHHHHHHHh-------CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 333457899999 998777553333 335677778999998764
No 146
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=87.23 E-value=38 Score=34.72 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=67.2
Q ss_pred ecccCHHH---hhcccCccceee---ccCch-hHHHHHHhCCc----EEecccccchhhhHHHHHHHhcceEEeeccCCc
Q 042731 338 HKWAPQVE---ILSHRSVSAFLS---HCGWN-SVLEALSHGVP----IIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSC 406 (481)
Q Consensus 338 ~~~ip~~~---ll~~~~v~~~I~---HGG~g-t~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 406 (481)
.+.+++.+ ++..+++ +|. +-|+| ++.||+++|+| +|+--..+-. . .++-|+.+++
T Consensus 341 ~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~----~----~l~~gllVnP---- 406 (456)
T TIGR02400 341 NRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA----Q----ELNGALLVNP---- 406 (456)
T ss_pred cCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh----H----HhCCcEEECC----
Confidence 34566654 5667776 664 44764 77799999999 6666444322 1 1245677765
Q ss_pred ccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHH
Q 042731 407 EVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFLNAAL 467 (481)
Q Consensus 407 ~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~ 467 (481)
.+.+.++++|.++|+.+. +..+++.+++.+.+. .-+...-+++++..|.
T Consensus 407 -~d~~~lA~aI~~aL~~~~--~er~~r~~~~~~~v~---------~~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 -YDIDGMADAIARALTMPL--EEREERHRAMMDKLR---------KNDVQRWREDFLSDLN 455 (456)
T ss_pred -CCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHh---------hCCHHHHHHHHHHHhh
Confidence 478999999999999761 145555555666554 2335666777777653
No 147
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=87.01 E-value=27 Score=32.88 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=31.2
Q ss_pred CCCChHHHHHHHHHHHhC-CCCEEEEEeCCcchhhhhh
Q 042731 2 AQGHIIPFLALARRLEET-NKYTITLVNTPLNLKKLKS 38 (481)
Q Consensus 2 ~~GHv~P~l~LA~~L~~~-~Gh~Vt~~~~~~~~~~i~~ 38 (481)
+.|++.-..++.++|+++ .+.+|++++.+...+.++.
T Consensus 9 ~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~ 46 (279)
T cd03789 9 WIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLEL 46 (279)
T ss_pred cHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhc
Confidence 468999999999999995 4589999999887776665
No 148
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=86.97 E-value=26 Score=32.56 Aligned_cols=78 Identities=21% Similarity=0.316 Sum_probs=45.7
Q ss_pred HHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEE----ecccCHHHhhcccCccceee-ccCc
Q 042731 287 LAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVV----HKWAPQVEILSHRSVSAFLS-HCGW 361 (481)
Q Consensus 287 ~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v----~~~ip~~~ll~~~~v~~~I~-HGG~ 361 (481)
+.+.++..|..|+++.+-..+ +. +..-+..++.+ ..+++. .++=|+-++|+.++. +|. --..
T Consensus 189 l~k~l~~~g~~~lisfSRRTp-------~~---~~s~l~~~l~s-~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaDSi 255 (329)
T COG3660 189 LVKILENQGGSFLISFSRRTP-------DT---VKSILKNNLNS-SPGIVWNNEDTGYNPYIDMLAAADY--IISTADSI 255 (329)
T ss_pred HHHHHHhCCceEEEEeecCCc-------HH---HHHHHHhcccc-CceeEeCCCCCCCCchHHHHhhcce--EEEecchh
Confidence 555666788888887765521 10 11112222221 112221 256688888987664 554 4456
Q ss_pred hhHHHHHHhCCcEEec
Q 042731 362 NSVLEALSHGVPIIGW 377 (481)
Q Consensus 362 gt~~eal~~GvP~l~~ 377 (481)
+-..||.+.|+|+.+.
T Consensus 256 nM~sEAasTgkPv~~~ 271 (329)
T COG3660 256 NMCSEAASTGKPVFIL 271 (329)
T ss_pred hhhHHHhccCCCeEEE
Confidence 7778999999999665
No 149
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.10 E-value=4.8 Score=37.92 Aligned_cols=83 Identities=16% Similarity=0.267 Sum_probs=53.8
Q ss_pred cccCHHHhhcccCccceeeccCchhHH-HHHHhCCcEEecccccchhh--hHHHHHHHhcceEEeeccCCcccCHHHHHH
Q 042731 339 KWAPQVEILSHRSVSAFLSHCGWNSVL-EALSHGVPIIGWPLAAEQFY--NSKLLEEEMGVCVEIARGMSCEVLKEDLSA 415 (481)
Q Consensus 339 ~~ip~~~ll~~~~v~~~I~HGG~gt~~-eal~~GvP~l~~P~~~DQ~~--na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ 415 (481)
.|-...++|.++++ .|--. ||.. +++-.|||+|.+|-.+-|+. -|.+=.+.||+.+.+-. .+.+-+.
T Consensus 301 sqqsfadiLH~ada--algmA--GTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~------~~aq~a~ 370 (412)
T COG4370 301 SQQSFADILHAADA--ALGMA--GTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR------PEAQAAA 370 (412)
T ss_pred eHHHHHHHHHHHHH--HHHhc--cchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC------CchhhHH
Confidence 34444566666554 33333 3333 46889999999999998865 66666767788888765 2333344
Q ss_pred HHH-HHhcCChhhHHHHHHHH
Q 042731 416 KIE-LVMNETEKGTDLRNKAN 435 (481)
Q Consensus 416 ~i~-~vl~~~~~~~~~~~~a~ 435 (481)
.+. ++|.|+ .+.++++
T Consensus 371 ~~~q~ll~dp----~r~~air 387 (412)
T COG4370 371 QAVQELLGDP----QRLTAIR 387 (412)
T ss_pred HHHHHHhcCh----HHHHHHH
Confidence 444 499999 6665555
No 150
>PRK12342 hypothetical protein; Provisional
Probab=85.29 E-value=7.9 Score=36.09 Aligned_cols=41 Identities=5% Similarity=-0.149 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHhhccCCCCccEEEeCCCCc------hHHHHHHHhCCceEEEec
Q 042731 86 EPHFKKLISELVNEQNGQKPLCIITDTFLG------WCKETAQEYGIFHAIFIG 133 (481)
Q Consensus 86 ~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~------~~~~~A~~lgiP~v~~~~ 133 (481)
...+...++.. +||+||+.-.+. -+..+|+.||+|++.+..
T Consensus 98 a~~La~~i~~~-------~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 98 AKALAAAIEKI-------GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred HHHHHHHHHHh-------CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 44556777877 899999875443 378999999999998665
No 151
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=84.21 E-value=29 Score=33.20 Aligned_cols=80 Identities=13% Similarity=0.185 Sum_probs=58.2
Q ss_pred cEE-EecccC---HHHhhcccCccceeec--cCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcc
Q 042731 334 GLV-VHKWAP---QVEILSHRSVSAFLSH--CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCE 407 (481)
Q Consensus 334 ~~~-v~~~ip---~~~ll~~~~v~~~I~H--GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~ 407 (481)
++. ..+++| +..+|+.++++.|+|+ =|.||+.-.+..|||+++- .+-++|....+ . |+-+--+. ..
T Consensus 207 ~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~e-~-gv~Vlf~~---d~ 278 (322)
T PRK02797 207 NFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLTE-Q-GLPVLFTG---DD 278 (322)
T ss_pred cEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHHh-C-CCeEEecC---Cc
Confidence 443 345666 4679999999877775 4889999999999999987 56667776555 6 77775565 67
Q ss_pred cCHHHHHHHHHHHh
Q 042731 408 VLKEDLSAKIELVM 421 (481)
Q Consensus 408 ~~~~~l~~~i~~vl 421 (481)
++...+.++=+++.
T Consensus 279 L~~~~v~e~~rql~ 292 (322)
T PRK02797 279 LDEDIVREAQRQLA 292 (322)
T ss_pred ccHHHHHHHHHHHH
Confidence 77777776644433
No 152
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=84.16 E-value=45 Score=32.76 Aligned_cols=99 Identities=11% Similarity=0.129 Sum_probs=58.5
Q ss_pred CeEEEEEccccc---ccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecc--
Q 042731 266 TSVLYVSFGSQN---TIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKW-- 340 (481)
Q Consensus 266 ~~~V~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~-- 340 (481)
++.|.+.-|+.. ..+.+.+.++++.+...+.++++..++.. . +.. .-..+.+... ....+-..+-
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e---~--e~~----~~~~i~~~~~-~~~~~~l~g~~s 252 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDK---D--DLA----CVNEIAQGCQ-TPPVTALAGKTT 252 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCCh---H--HHH----HHHHHHHhcC-CCccccccCCCC
Confidence 457777777764 25678899999999877888776654431 0 000 0011111111 0111112222
Q ss_pred cCH-HHhhcccCccceeeccCchhHHHHHHhCCcEEec
Q 042731 341 APQ-VEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGW 377 (481)
Q Consensus 341 ip~-~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~ 377 (481)
+.+ ..++.++++ +|++- .|-+.=|.+.|+|+|++
T Consensus 253 L~el~ali~~a~l--~v~nD-SGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 253 FPELGALIDHAQL--FIGVD-SAPAHIAAAVNTPLICL 287 (352)
T ss_pred HHHHHHHHHhCCE--EEecC-CHHHHHHHHcCCCEEEE
Confidence 233 468888775 88874 47888899999999876
No 153
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=83.72 E-value=0.86 Score=40.66 Aligned_cols=28 Identities=18% Similarity=0.101 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCcchhhh
Q 042731 8 PFLALARRLEETNKYTITLVNTPLNLKKL 36 (481)
Q Consensus 8 P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i 36 (481)
-+.+|+++|++ .||+|+++.+.......
T Consensus 15 Gi~aL~~~L~~-~g~~V~VvAP~~~~Sg~ 42 (196)
T PF01975_consen 15 GIRALAKALSA-LGHDVVVVAPDSEQSGT 42 (196)
T ss_dssp HHHHHHHHHTT-TSSEEEEEEESSSTTTS
T ss_pred HHHHHHHHHHh-cCCeEEEEeCCCCCcCc
Confidence 46788999988 78999999987665443
No 154
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=83.28 E-value=76 Score=34.77 Aligned_cols=114 Identities=16% Similarity=0.106 Sum_probs=66.1
Q ss_pred EEecccCHHH---hhcccCccceeec---cCch-hHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCccc
Q 042731 336 VVHKWAPQVE---ILSHRSVSAFLSH---CGWN-SVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEV 408 (481)
Q Consensus 336 ~v~~~ip~~~---ll~~~~v~~~I~H---GG~g-t~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~ 408 (481)
++.+++++.+ ++..+++ ++.- -|+| ++.|++++|+|-..+|...+--.-+ .+. .-|+.+++ .
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~---~~l-~~~llv~P-----~ 413 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAA---AEL-AEALLVNP-----N 413 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchh---HHh-CcCeEECC-----C
Confidence 3556788754 6667776 5543 3654 7789999977522222212111111 112 33777776 4
Q ss_pred CHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHhhhh
Q 042731 409 LKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFLNAALIMRQ 471 (481)
Q Consensus 409 ~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~ 471 (481)
+.+.++++|.++|+.+.+ +.+++.+++.+.++ .-+...-++++++.+.+...
T Consensus 414 d~~~la~ai~~~l~~~~~--e~~~r~~~~~~~v~---------~~~~~~w~~~~l~~l~~~~~ 465 (726)
T PRK14501 414 DIEGIAAAIKRALEMPEE--EQRERMQAMQERLR---------RYDVHKWASDFLDELREAAE 465 (726)
T ss_pred CHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHH---------hCCHHHHHHHHHHHHHHHHh
Confidence 689999999999987611 23333444444443 23356777788888777653
No 155
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=82.73 E-value=18 Score=31.47 Aligned_cols=30 Identities=17% Similarity=-0.075 Sum_probs=24.2
Q ss_pred CccEEEeCCCC--chHHHHHHHh------CCceEEEec
Q 042731 104 KPLCIITDTFL--GWCKETAQEY------GIFHAIFIG 133 (481)
Q Consensus 104 ~pD~vI~D~~~--~~~~~~A~~l------giP~v~~~~ 133 (481)
+||+||+..-. .+.+.+|..+ |.+.|.+-+
T Consensus 92 rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 92 RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 89999999644 3667888889 999998654
No 156
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=82.47 E-value=12 Score=35.03 Aligned_cols=42 Identities=5% Similarity=-0.224 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHhhccCCCCccEEEeCCCCc------hHHHHHHHhCCceEEEec
Q 042731 85 LEPHFKKLISELVNEQNGQKPLCIITDTFLG------WCKETAQEYGIFHAIFIG 133 (481)
Q Consensus 85 ~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~------~~~~~A~~lgiP~v~~~~ 133 (481)
....+.+.+++. .||+||+...+. -+..+|+.||+|++.+..
T Consensus 100 tA~~La~ai~~~-------~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 100 TASALAAAAQKA-------GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred HHHHHHHHHHHh-------CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 344556777887 899999864432 567899999999998765
No 157
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=81.80 E-value=6.4 Score=36.34 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCcchhhh
Q 042731 8 PFLALARRLEETNKYTITLVNTPLNLKKL 36 (481)
Q Consensus 8 P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i 36 (481)
-+.+|++.|+. +++|+++.+.......
T Consensus 15 Gi~aL~~al~~--~~dV~VVAP~~~qSg~ 41 (252)
T COG0496 15 GIRALARALRE--GADVTVVAPDREQSGA 41 (252)
T ss_pred HHHHHHHHHhh--CCCEEEEccCCCCccc
Confidence 35567777775 9999999988665433
No 158
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=80.19 E-value=14 Score=34.62 Aligned_cols=81 Identities=14% Similarity=0.055 Sum_probs=50.1
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCcchh-hhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhhhhH
Q 042731 9 FLALARRLEETNKYTITLVNTPLNLK-KLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQASASLEP 87 (481)
Q Consensus 9 ~l~LA~~L~~~~Gh~Vt~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (481)
-..|++.|.+ +||+|+..+...+.. .+...+ +..+. .. .+ -..
T Consensus 12 gr~la~~L~~-~g~~v~~s~~t~~~~~~~~~~g----~~~v~-~g----------------~l--------------~~~ 55 (256)
T TIGR00715 12 SRAIAKGLIA-QGIEILVTVTTSEGKHLYPIHQ----ALTVH-TG----------------AL--------------DPQ 55 (256)
T ss_pred HHHHHHHHHh-CCCeEEEEEccCCccccccccC----CceEE-EC----------------CC--------------CHH
Confidence 5689999999 899999888654432 222210 11111 00 00 112
Q ss_pred HHHHHHHHHhhccCCCCccEEEeCCCCch------HHHHHHHhCCceEEEe
Q 042731 88 HFKKLISELVNEQNGQKPLCIITDTFLGW------CKETAQEYGIFHAIFI 132 (481)
Q Consensus 88 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~~------~~~~A~~lgiP~v~~~ 132 (481)
.+.+++++. ++|+||--.+-++ +..+|+++|||++.|-
T Consensus 56 ~l~~~l~~~-------~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 56 ELREFLKRH-------SIDILVDATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred HHHHHHHhc-------CCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 356788888 8999886544222 3478899999999854
No 159
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=79.00 E-value=58 Score=31.73 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=63.2
Q ss_pred CcEE-EecccCH---HHhhcccCccceeec--cCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCc
Q 042731 333 QGLV-VHKWAPQ---VEILSHRSVSAFLSH--CGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSC 406 (481)
Q Consensus 333 ~~~~-v~~~ip~---~~ll~~~~v~~~I~H--GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 406 (481)
+++. ..+++|. .++|..++++.|+|. =|.|++.-.|..|+|+++- .+-+++-...+ . |+-+.-.. .
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l~~-~-~ipVlf~~---d 316 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDLKE-Q-GIPVLFYG---D 316 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHHHh-C-CCeEEecc---c
Confidence 4554 3567775 568999999766664 5899999999999999987 56667666555 6 77776665 6
Q ss_pred ccCHHHHHHHHHHHhc
Q 042731 407 EVLKEDLSAKIELVMN 422 (481)
Q Consensus 407 ~~~~~~l~~~i~~vl~ 422 (481)
.++...|+++=+++.+
T Consensus 317 ~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 ELDEALVREAQRQLAN 332 (360)
T ss_pred cCCHHHHHHHHHHHhh
Confidence 8899999988887765
No 160
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=78.19 E-value=3.6 Score=42.82 Aligned_cols=92 Identities=9% Similarity=0.097 Sum_probs=59.5
Q ss_pred CcEEEecccC--H-HHhhcccCccceeecc---CchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCc
Q 042731 333 QGLVVHKWAP--Q-VEILSHRSVSAFLSHC---GWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSC 406 (481)
Q Consensus 333 ~~~~v~~~ip--~-~~ll~~~~v~~~I~HG---G~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 406 (481)
..+.+.++.. + ...+..+.+ +|.=+ |.+|.+||+++|+|+| .......|... .=|.-+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li~----- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYIID----- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEeC-----
Confidence 4667777777 3 356766554 77665 6779999999999999 22223333322 3343332
Q ss_pred ccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 042731 407 EVLKEDLSAKIELVMNETEKGTDLRNKANEVKVII 441 (481)
Q Consensus 407 ~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~ 441 (481)
+..+|.++|...|.+...-+.+...|-+.+...
T Consensus 474 --d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~y 506 (519)
T TIGR03713 474 --DISELLKALDYYLDNLKNWNYSLAYSIKLIDDY 506 (519)
T ss_pred --CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 578999999999999844444555555554444
No 161
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=78.13 E-value=14 Score=29.24 Aligned_cols=82 Identities=18% Similarity=0.102 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhhh
Q 042731 6 IIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQASASL 85 (481)
Q Consensus 6 v~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (481)
-.-++.+++.|.+ .|+++. +++...+.+++ .|+.+..+..+ .. .
T Consensus 12 k~~~~~~~~~l~~-~G~~l~--aT~gT~~~l~~-----~gi~~~~v~~~------~~----------------------~ 55 (110)
T cd01424 12 KPEAVEIAKRLAE-LGFKLV--ATEGTAKYLQE-----AGIPVEVVNKV------SE----------------------G 55 (110)
T ss_pred HhHHHHHHHHHHH-CCCEEE--EchHHHHHHHH-----cCCeEEEEeec------CC----------------------C
Confidence 3457899999999 899983 45566678887 66666555421 00 1
Q ss_pred hHHHHHHHHHHhhccCCCCccEEEeCCC-------CchHHHHHHHhCCceEE
Q 042731 86 EPHFKKLISELVNEQNGQKPLCIITDTF-------LGWCKETAQEYGIFHAI 130 (481)
Q Consensus 86 ~~~~~~ll~~~~~~~~~~~pD~vI~D~~-------~~~~~~~A~~lgiP~v~ 130 (481)
.+.+.+++++- ++|+||..+- .......|-.+|||++.
T Consensus 56 ~~~i~~~i~~~-------~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 56 RPNIVDLIKNG-------EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred chhHHHHHHcC-------CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 12345566655 8999998532 23556788899999995
No 162
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=76.94 E-value=17 Score=40.09 Aligned_cols=105 Identities=14% Similarity=0.147 Sum_probs=65.4
Q ss_pred ccCHH---HhhcccCccceee---ccCch-hHHHHHHhCCc---EEecc-cccchhhhHHHHHHHhc-ceEEeeccCCcc
Q 042731 340 WAPQV---EILSHRSVSAFLS---HCGWN-SVLEALSHGVP---IIGWP-LAAEQFYNSKLLEEEMG-VCVEIARGMSCE 407 (481)
Q Consensus 340 ~ip~~---~ll~~~~v~~~I~---HGG~g-t~~eal~~GvP---~l~~P-~~~DQ~~na~~v~~~lG-~G~~~~~~~~~~ 407 (481)
+++.. .++..+++ ||. .-|+| +.+|++++|+| ++++. +.+ .+. .+| -|+.+++
T Consensus 363 ~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G----~~~----~l~~~allVnP----- 427 (797)
T PLN03063 363 SVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG----AGQ----SLGAGALLVNP----- 427 (797)
T ss_pred CCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCcC----chh----hhcCCeEEECC-----
Confidence 45553 56777776 664 44876 66799999999 34443 322 222 124 5778876
Q ss_pred cCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHhhh
Q 042731 408 VLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFLNAALIMR 470 (481)
Q Consensus 408 ~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~ 470 (481)
.+.+.++++|.++|+.+.+ ..+++.+++.+.++ .-+...-++.|++.+.+..
T Consensus 428 ~D~~~lA~AI~~aL~m~~~--er~~r~~~~~~~v~---------~~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 428 WNITEVSSAIKEALNMSDE--ERETRHRHNFQYVK---------THSAQKWADDFMSELNDII 479 (797)
T ss_pred CCHHHHHHHHHHHHhCCHH--HHHHHHHHHHHhhh---------hCCHHHHHHHHHHHHHHHh
Confidence 5789999999999995411 24444455555543 2224566777877776655
No 163
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=76.50 E-value=22 Score=37.22 Aligned_cols=77 Identities=16% Similarity=0.084 Sum_probs=47.2
Q ss_pred HHHhhcccCccceee---ccCch-hHHHHHHhCCcEEeccccc-chhhhHHHHHHHhc--ceEEeeccC--CcccCHHHH
Q 042731 343 QVEILSHRSVSAFLS---HCGWN-SVLEALSHGVPIIGWPLAA-EQFYNSKLLEEEMG--VCVEIARGM--SCEVLKEDL 413 (481)
Q Consensus 343 ~~~ll~~~~v~~~I~---HGG~g-t~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~lG--~G~~~~~~~--~~~~~~~~l 413 (481)
..+++..+++ +|. +=|+| ++.||+++|+|+|+....+ .... .-+... + .|+.+.... +-.-+.+.|
T Consensus 468 y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~-~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 468 YEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM--EEHIED-PESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred hHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh--HHHhcc-CCCceEEEecCCccchHHHHHHH
Confidence 5566766665 665 34654 8999999999999986643 2111 111111 2 577776411 112356788
Q ss_pred HHHHHHHhcCC
Q 042731 414 SAKIELVMNET 424 (481)
Q Consensus 414 ~~~i~~vl~~~ 424 (481)
++++.++++.+
T Consensus 543 a~~m~~~~~~~ 553 (590)
T cd03793 543 TQYMYEFCQLS 553 (590)
T ss_pred HHHHHHHhCCc
Confidence 88888888544
No 164
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=75.87 E-value=70 Score=33.04 Aligned_cols=112 Identities=15% Similarity=0.128 Sum_probs=73.4
Q ss_pred EEEecccCHHH---hhcccCccceee--ccCchhHH-HHHHhCC----cEEecccccchhhhHHHHHHHhcceEEeeccC
Q 042731 335 LVVHKWAPQVE---ILSHRSVSAFLS--HCGWNSVL-EALSHGV----PIIGWPLAAEQFYNSKLLEEEMGVCVEIARGM 404 (481)
Q Consensus 335 ~~v~~~ip~~~---ll~~~~v~~~I~--HGG~gt~~-eal~~Gv----P~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 404 (481)
+.+.+.+|+.+ ++..++| ++|| .-|+|-+. |.++++. |+|+--+.+ ..+ .|.-++.+++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-------aa~-~l~~AllVNP-- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-------AAV-ELKGALLTNP-- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecccc-------chh-hcCCCEEECC--
Confidence 45667888765 5667777 4554 46898665 9999987 555543322 113 3366888887
Q ss_pred CcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHhhhh
Q 042731 405 SCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFLNAALIMRQ 471 (481)
Q Consensus 405 ~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~ 471 (481)
.+.+.++++|.++|+.+ . ++-+++.+++.+.++ .. +...=++.|+..|..+.+
T Consensus 433 ---~d~~~~A~ai~~AL~m~-~-~Er~~R~~~l~~~v~--------~~-d~~~W~~~fl~~l~~~~~ 485 (487)
T TIGR02398 433 ---YDPVRMDETIYVALAMP-K-AEQQARMREMFDAVN--------YY-DVQRWADEFLAAVSPQAQ 485 (487)
T ss_pred ---CCHHHHHHHHHHHHcCC-H-HHHHHHHHHHHHHHh--------hC-CHHHHHHHHHHHhhhccc
Confidence 58999999999999998 1 234555555555554 22 245557788888766554
No 165
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=75.17 E-value=83 Score=30.49 Aligned_cols=96 Identities=10% Similarity=0.077 Sum_probs=56.9
Q ss_pred CCeEEEEEccccc----ccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEE-Eec
Q 042731 265 YTSVLYVSFGSQN----TIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLV-VHK 339 (481)
Q Consensus 265 ~~~~V~vs~Gs~~----~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-v~~ 339 (481)
.++.|.+.-|+.. ..+.+.+.++++.+...+.++++.-+... -. .-..+.+.. +.+++ ..+
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e-------~~----~~~~i~~~~---~~~~~~l~g 238 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKD-------HP----AGNEIEALL---PGELRNLAG 238 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhh-------HH----HHHHHHHhC---CcccccCCC
Confidence 3567888877742 25678899999998877777665533221 00 111222111 11221 112
Q ss_pred c--cCH-HHhhcccCccceeeccCchhHHHHHHhCCcEEec
Q 042731 340 W--APQ-VEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGW 377 (481)
Q Consensus 340 ~--ip~-~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~ 377 (481)
- +.+ ..++.++++ +|+.- .|.+.=|.+.|+|+|++
T Consensus 239 ~~sL~el~ali~~a~l--~I~~D-SGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 239 ETSLDEAVDLIALAKA--VVTND-SGLMHVAAALNRPLVAL 276 (334)
T ss_pred CCCHHHHHHHHHhCCE--EEeeC-CHHHHHHHHcCCCEEEE
Confidence 1 223 468888775 88874 47788899999999876
No 166
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=75.11 E-value=62 Score=28.98 Aligned_cols=145 Identities=11% Similarity=0.076 Sum_probs=77.7
Q ss_pred CeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHH
Q 042731 266 TSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVE 345 (481)
Q Consensus 266 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ 345 (481)
+.++.|..|.+. ...+..|...|..+.++.. . +.+.+.+..+ ...+..........
T Consensus 11 k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~-~--------------~~~~l~~l~~--~~~i~~~~~~~~~~ 66 (202)
T PRK06718 11 KRVVIVGGGKVA-------GRRAITLLKYGAHIVVISP-E--------------LTENLVKLVE--EGKIRWKQKEFEPS 66 (202)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcC-C--------------CCHHHHHHHh--CCCEEEEecCCChh
Confidence 567888777775 3455666667777665542 2 2233333222 23344433333344
Q ss_pred hhcccCccceeeccCchhHHHHHH----hCCcEEecccccchhhh-----HHHHHHHhcceEEeecc-CCcccCHHHHHH
Q 042731 346 ILSHRSVSAFLSHCGWNSVLEALS----HGVPIIGWPLAAEQFYN-----SKLLEEEMGVCVEIARG-MSCEVLKEDLSA 415 (481)
Q Consensus 346 ll~~~~v~~~I~HGG~gt~~eal~----~GvP~l~~P~~~DQ~~n-----a~~v~~~lG~G~~~~~~-~~~~~~~~~l~~ 415 (481)
.+..+++ +|.--+.-.+.+.++ .++++-++ |.+.. -..+.+- ++-+.+..+ ++.. -+..|++
T Consensus 67 ~l~~adl--ViaaT~d~elN~~i~~~a~~~~lvn~~----d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~-la~~lr~ 138 (202)
T PRK06718 67 DIVDAFL--VIAATNDPRVNEQVKEDLPENALFNVI----TDAESGNVVFPSALHRG-KLTISVSTDGASPK-LAKKIRD 138 (202)
T ss_pred hcCCceE--EEEcCCCHHHHHHHHHHHHhCCcEEEC----CCCccCeEEEeeEEEcC-CeEEEEECCCCChH-HHHHHHH
Confidence 5556554 777767655555444 56655443 43332 2233322 444444442 2222 2356777
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 042731 416 KIELVMNETEKGTDLRNKANEVKVIIKNA 444 (481)
Q Consensus 416 ~i~~vl~~~~~~~~~~~~a~~~~~~~~~~ 444 (481)
.|.+++. + +...+-+.+.++++.+++.
T Consensus 139 ~ie~~~~-~-~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 139 ELEALYD-E-SYESYIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHHcc-h-hHHHHHHHHHHHHHHHHHh
Confidence 7777662 2 4457888888888888754
No 167
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=74.65 E-value=13 Score=28.29 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=47.6
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhhhhHH
Q 042731 9 FLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQASASLEPH 88 (481)
Q Consensus 9 ~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (481)
++.+++.|.+ .|++|. +| +...+.+++ .|+++..+-.. .. + . .+.
T Consensus 2 ~~~~~~~l~~-lG~~i~-AT-~gTa~~L~~-----~Gi~~~~~~~k------i~--~---~----------------~~~ 46 (90)
T smart00851 2 LVELAKRLAE-LGFELV-AT-GGTAKFLRE-----AGLPVKTLHPK------VH--G---G----------------ILA 46 (90)
T ss_pred HHHHHHHHHH-CCCEEE-Ec-cHHHHHHHH-----CCCcceeccCC------CC--C---C----------------CHH
Confidence 4689999999 999983 44 455677877 55554221110 00 0 0 012
Q ss_pred HHHHHHHHhhccCCCCccEEEeCCC---------CchHHHHHHHhCCceE
Q 042731 89 FKKLISELVNEQNGQKPLCIITDTF---------LGWCKETAQEYGIFHA 129 (481)
Q Consensus 89 ~~~ll~~~~~~~~~~~pD~vI~D~~---------~~~~~~~A~~lgiP~v 129 (481)
+.++++.- +.|+||..+. ......+|...+||++
T Consensus 47 i~~~i~~g-------~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 47 ILDLIKNG-------EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHhcCC-------CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 34455554 8999998643 1134577888999986
No 168
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=74.33 E-value=18 Score=31.00 Aligned_cols=94 Identities=18% Similarity=0.068 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCc---chhh----hhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 042731 8 PFLALARRLEETNKYTITLVNTPL---NLKK----LKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQ 80 (481)
Q Consensus 8 P~l~LA~~L~~~~Gh~Vt~~~~~~---~~~~----i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (481)
-++..|++|+++.|.+|+.++... ..+. +...|. . +...+..+ .+.. .
T Consensus 19 e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~--d--~v~~~~~~----~~~~-----------------~ 73 (164)
T PF01012_consen 19 EALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGA--D--KVYHIDDP----ALAE-----------------Y 73 (164)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTE--S--EEEEEE-G----GGTT-----------------C
T ss_pred HHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCC--c--EEEEecCc----cccc-----------------c
Confidence 367889999985577877776542 2333 222221 1 23333321 0000 0
Q ss_pred HHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCc---hHHHHHHHhCCceEEEec
Q 042731 81 ASASLEPHFKKLISELVNEQNGQKPLCIITDTFLG---WCKETAQEYGIFHAIFIG 133 (481)
Q Consensus 81 ~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~---~~~~~A~~lgiP~v~~~~ 133 (481)
......+.+.+++++. +||+||...... .+..+|.++|.|++.-..
T Consensus 74 ~~~~~a~~l~~~~~~~-------~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 74 DPEAYADALAELIKEE-------GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp -HHHHHHHHHHHHHHH-------T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred CHHHHHHHHHHHHHhc-------CCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 1123455667788887 999999885443 567899999999997443
No 169
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=73.73 E-value=98 Score=30.62 Aligned_cols=44 Identities=25% Similarity=0.295 Sum_probs=32.5
Q ss_pred cEEEecccCH---HHhhcccCccceeeccCchhHHHHHHhCCcEEecccc
Q 042731 334 GLVVHKWAPQ---VEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLA 380 (481)
Q Consensus 334 ~~~v~~~ip~---~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~ 380 (481)
.+.+.+|+|| +.||-.+++ .|| . |==|...|..+|+|.|=-.+.
T Consensus 245 ~l~~lPF~~Q~~yD~LLw~cD~-NfV-R-GEDSfVRAqwAgkPFvWhIYp 291 (374)
T PF10093_consen 245 TLHVLPFVPQDDYDRLLWACDF-NFV-R-GEDSFVRAQWAGKPFVWHIYP 291 (374)
T ss_pred EEEECCCCCHHHHHHHHHhCcc-ceE-e-cchHHHHHHHhCCCceEecCc
Confidence 4567789998 569988886 233 3 567999999999999844433
No 170
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=73.06 E-value=57 Score=27.65 Aligned_cols=140 Identities=20% Similarity=0.262 Sum_probs=71.4
Q ss_pred EEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhh
Q 042731 268 VLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEIL 347 (481)
Q Consensus 268 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll 347 (481)
.|-|-+||.. +.....++...|+..+..+-+-+...+ ..|+.+.+.++ . +
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saH------------R~p~~l~~~~~-------------~---~ 51 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAH------------RTPERLLEFVK-------------E---Y 51 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TT------------TSHHHHHHHHH-------------H---T
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEecc------------CCHHHHHHHHH-------------H---h
Confidence 4566667764 677888899999998876655443321 13444433222 1 1
Q ss_pred cccCccceeeccCch----hHHHHHHhCCcEEecccccchhhhHHH---HHHHh-cceEEeeccCCcccCHHHHHHHHHH
Q 042731 348 SHRSVSAFLSHCGWN----SVLEALSHGVPIIGWPLAAEQFYNSKL---LEEEM-GVCVEIARGMSCEVLKEDLSAKIEL 419 (481)
Q Consensus 348 ~~~~v~~~I~HGG~g----t~~eal~~GvP~l~~P~~~DQ~~na~~---v~~~l-G~G~~~~~~~~~~~~~~~l~~~i~~ 419 (481)
..-.++.||+=.|.. ++.-++ .-.|+|.+|....+.....- +.+.. |+++..-. =+...++..++-.|..
T Consensus 52 ~~~~~~viIa~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~-i~~~~nAA~~A~~ILa 129 (150)
T PF00731_consen 52 EARGADVIIAVAGMSAALPGVVASL-TTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVG-INNGFNAALLAARILA 129 (150)
T ss_dssp TTTTESEEEEEEESS--HHHHHHHH-SSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-S-STHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEECCCcccchhhheec-cCCCEEEeecCcccccCcccHHHHHhccCCCCceEEE-ccCchHHHHHHHHHHh
Confidence 111123377766653 333333 37999999998775432221 11122 55443321 0123455555555543
Q ss_pred HhcCChhhHHHHHHHHHHHHHHHHH
Q 042731 420 VMNETEKGTDLRNKANEVKVIIKNA 444 (481)
Q Consensus 420 vl~~~~~~~~~~~~a~~~~~~~~~~ 444 (481)
+ .|+ +++++.+.+++..++.
T Consensus 130 ~-~d~----~l~~kl~~~~~~~~~~ 149 (150)
T PF00731_consen 130 L-KDP----ELREKLRAYREKMKEK 149 (150)
T ss_dssp T-T-H----HHHHHHHHHHHHHHHH
T ss_pred c-CCH----HHHHHHHHHHHHHHcc
Confidence 3 455 7888888888887643
No 171
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=71.26 E-value=1.1e+02 Score=30.00 Aligned_cols=96 Identities=13% Similarity=-0.012 Sum_probs=59.8
Q ss_pred CCCChHHHHHHHHHHHhC-CCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 042731 2 AQGHIIPFLALARRLEET-NKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQ 80 (481)
Q Consensus 2 ~~GHv~P~l~LA~~L~~~-~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (481)
+.|++.=..++.+.|+++ .+.+|++++.+.+.+.++.. +.++-+- .++ . .. .. ..+
T Consensus 10 ~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----P~vd~vi-~~~-------~--~~--~~-----~~~-- 66 (348)
T PRK10916 10 WVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM----PEVNEAI-PMP-------L--GH--GA-----LEI-- 66 (348)
T ss_pred cccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC----CccCEEE-ecc-------c--cc--ch-----hhh--
Confidence 578999999999999997 69999999998887777652 3333211 111 0 00 00 000
Q ss_pred HHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEE
Q 042731 81 ASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAI 130 (481)
Q Consensus 81 ~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~ 130 (481)
....++++.+..+ ++|++|.=....-...++...|+|.-.
T Consensus 67 ------~~~~~l~~~lr~~----~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 ------GERRRLGHSLREK----RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ------HHHHHHHHHHHhc----CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 1112333444333 899999776555666777777888664
No 172
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=70.02 E-value=4.6 Score=31.23 Aligned_cols=84 Identities=25% Similarity=0.191 Sum_probs=49.0
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhhhhHH
Q 042731 9 FLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQASASLEPH 88 (481)
Q Consensus 9 ~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (481)
++.+|+.|.+ .|+++ ++++...+.+++ .|+++..+-.. -..++ .+ .-...
T Consensus 2 ~~~~a~~l~~-lG~~i--~AT~gTa~~L~~-----~Gi~~~~v~~~---~~~~~-------~~------------~g~~~ 51 (95)
T PF02142_consen 2 IVPLAKRLAE-LGFEI--YATEGTAKFLKE-----HGIEVTEVVNK---IGEGE-------SP------------DGRVQ 51 (95)
T ss_dssp HHHHHHHHHH-TTSEE--EEEHHHHHHHHH-----TT--EEECCEE---HSTG--------GG------------THCHH
T ss_pred HHHHHHHHHH-CCCEE--EEChHHHHHHHH-----cCCCceeeeee---cccCc-------cC------------CchhH
Confidence 5789999999 99665 566667778888 66664443310 00000 00 00003
Q ss_pred HHHHHHHHhhccCCCCccEEEeCCCCch---------HHHHHHHhCCceE
Q 042731 89 FKKLISELVNEQNGQKPLCIITDTFLGW---------CKETAQEYGIFHA 129 (481)
Q Consensus 89 ~~~ll~~~~~~~~~~~pD~vI~D~~~~~---------~~~~A~~lgiP~v 129 (481)
+.++++.- +.|+||..+...- -..+|...+||++
T Consensus 52 i~~~i~~~-------~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 52 IMDLIKNG-------KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHTT-------SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHHHHcC-------CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 45666666 8999998754331 1467888999986
No 173
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=69.83 E-value=12 Score=32.35 Aligned_cols=44 Identities=14% Similarity=0.115 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHH--H-HH-HH-h-CCceEEEec
Q 042731 83 ASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCK--E-TA-QE-Y-GIFHAIFIG 133 (481)
Q Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~--~-~A-~~-l-giP~v~~~~ 133 (481)
....+.+.++|++. +||+||+...+.... . +- +. + ++|.+.+.+
T Consensus 75 ~~~~~~l~~~l~~~-------~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 75 RLFARRLIRLLREF-------QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHHhhc-------CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 34456778888888 999999997664333 1 11 22 4 578776655
No 174
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=69.80 E-value=9.5 Score=33.36 Aligned_cols=71 Identities=20% Similarity=0.308 Sum_probs=47.3
Q ss_pred cccCccceeeccCchhHHHHHHhCCcEEecccc-----------------------cchhhhHHHHHHHhcceEEeeccC
Q 042731 348 SHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLA-----------------------AEQFYNSKLLEEEMGVCVEIARGM 404 (481)
Q Consensus 348 ~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~-----------------------~DQ~~na~~v~~~lG~G~~~~~~~ 404 (481)
-+..++.+|++||...+..... ++|+|-+|.. .....+...+.+.||+-+..-.
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~-- 107 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYP-- 107 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEE--
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEE--
Confidence 3455666999999988888777 9999999982 2334457778777787766665
Q ss_pred CcccCHHHHHHHHHHHhcC
Q 042731 405 SCEVLKEDLSAKIELVMNE 423 (481)
Q Consensus 405 ~~~~~~~~l~~~i~~vl~~ 423 (481)
--+.+++...|.++..+
T Consensus 108 --~~~~~e~~~~i~~~~~~ 124 (176)
T PF06506_consen 108 --YDSEEEIEAAIKQAKAE 124 (176)
T ss_dssp --ESSHHHHHHHHHHHHHT
T ss_pred --ECCHHHHHHHHHHHHHc
Confidence 44688888888887654
No 175
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=69.33 E-value=32 Score=32.90 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=38.0
Q ss_pred ccceeeccCchhHHHHHHh----CCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCC
Q 042731 352 VSAFLSHCGWNSVLEALSH----GVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 352 v~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
++.+|+-||=||+.+++.. ++|++.+-. . .+|.. ...+.+++.+.|.++++++
T Consensus 64 ~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn~--------G------~lGFL------~~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 64 ADLAVVLGGDGTMLGIGRQLAPYGVPLIGINH--------G------RLGFI------TDIPLDDMQETLPPMLAGN 120 (291)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEcC--------C------Ccccc------ccCCHHHHHHHHHHHHcCC
Confidence 3459999999999999874 678888721 1 12322 2356788888998888776
No 176
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=68.43 E-value=35 Score=31.74 Aligned_cols=39 Identities=10% Similarity=0.038 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhccCCCCccEEEeC--CCCc----hHHHHHHHhCCceEEEe
Q 042731 87 PHFKKLISELVNEQNGQKPLCIITD--TFLG----WCKETAQEYGIFHAIFI 132 (481)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~pD~vI~D--~~~~----~~~~~A~~lgiP~v~~~ 132 (481)
+.+.+++++. ++++||=- +|.. -+..+|+++|||++.|.
T Consensus 55 ~~l~~~l~~~-------~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 55 EGLAAYLREE-------GIDLVIDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred HHHHHHHHHC-------CCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 4557788887 89998833 3321 33478999999999865
No 177
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=67.29 E-value=81 Score=27.10 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=21.8
Q ss_pred ccceeeccCch------hHHHHHHhCCcEEeccc
Q 042731 352 VSAFLSHCGWN------SVLEALSHGVPIIGWPL 379 (481)
Q Consensus 352 v~~~I~HGG~g------t~~eal~~GvP~l~~P~ 379 (481)
..++++|+|-| .+.+|...++|+|++.-
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 34478887744 77899999999999963
No 178
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=66.92 E-value=27 Score=27.85 Aligned_cols=82 Identities=18% Similarity=0.090 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhhhh
Q 042731 7 IPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQASASLE 86 (481)
Q Consensus 7 ~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (481)
.-++.+|+.|.+ .|+++ ++++...+.+++ .|+.+..+.-. ..+ ..
T Consensus 12 ~~~~~~a~~l~~-~G~~i--~AT~gTa~~L~~-----~Gi~~~~v~~~------~~~---------------------g~ 56 (112)
T cd00532 12 AMLVDLAPKLSS-DGFPL--FATGGTSRVLAD-----AGIPVRAVSKR------HED---------------------GE 56 (112)
T ss_pred HHHHHHHHHHHH-CCCEE--EECcHHHHHHHH-----cCCceEEEEec------CCC---------------------CC
Confidence 347889999999 99998 344566677887 56666554411 100 11
Q ss_pred HHHHHHHHH-HhhccCCCCccEEEeCC--CC--------chHHHHHHHhCCceEE
Q 042731 87 PHFKKLISE-LVNEQNGQKPLCIITDT--FL--------GWCKETAQEYGIFHAI 130 (481)
Q Consensus 87 ~~~~~ll~~-~~~~~~~~~pD~vI~D~--~~--------~~~~~~A~~lgiP~v~ 130 (481)
+.+.+++++ - +.|+||.-+ .. .....+|-..+||++.
T Consensus 57 ~~i~~~i~~~g-------~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 57 PTVDAAIAEKG-------KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred cHHHHHHhCCC-------CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 334556665 5 899999843 21 1334678889999986
No 179
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=66.74 E-value=47 Score=31.03 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHhhccCCCCccEEEeC-----CCCc-hHHHHHHHhCCceEEEec
Q 042731 85 LEPHFKKLISELVNEQNGQKPLCIITD-----TFLG-WCKETAQEYGIFHAIFIG 133 (481)
Q Consensus 85 ~~~~~~~ll~~~~~~~~~~~pD~vI~D-----~~~~-~~~~~A~~lgiP~v~~~~ 133 (481)
....+.+.++.. ++|+||+. ..+. -+..+|+.||.|++.+..
T Consensus 99 ta~~Laa~~~~~-------~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 99 TAKALAAAVKKI-------GPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred HHHHHHHHHHhc-------CCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 455667888888 99999965 3222 567999999999998654
No 180
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=66.42 E-value=87 Score=27.64 Aligned_cols=40 Identities=20% Similarity=0.152 Sum_probs=27.0
Q ss_pred HHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCC
Q 042731 11 ALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFN 54 (481)
Q Consensus 11 ~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 54 (481)
.|+..|.+ +||+|++.+.....+.-... . .|+++..+|.+
T Consensus 25 ~L~~~l~~-~g~~v~Vyc~~~~~~~~~~~-y--~gv~l~~i~~~ 64 (185)
T PF09314_consen 25 ELAPRLVS-KGIDVTVYCRSDYYPYKEFE-Y--NGVRLVYIPAP 64 (185)
T ss_pred HHHHHHhc-CCceEEEEEccCCCCCCCcc-c--CCeEEEEeCCC
Confidence 57788888 89999999876544222211 1 67888887753
No 181
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=64.60 E-value=57 Score=33.12 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEe
Q 042731 87 PHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFI 132 (481)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (481)
..+.+++++. +||++|.+.. ...+|+++|||++.+.
T Consensus 362 ~e~~~~l~~~-------~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 362 FDIESYAKEL-------KIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred HHHHHHHHhc-------CCCEEEECch---hHHHHHHcCCCEEEec
Confidence 4556777777 9999999965 6789999999998654
No 182
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=64.09 E-value=35 Score=31.79 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCcchh
Q 042731 8 PFLALARRLEETNKYTITLVNTPLNLK 34 (481)
Q Consensus 8 P~l~LA~~L~~~~Gh~Vt~~~~~~~~~ 34 (481)
-+.+|+++|++ +|+|+++.+...+.
T Consensus 15 Gl~aL~~~l~~--~~~V~VvAP~~~~S 39 (253)
T PRK13933 15 GINTLAELLSK--YHEVIIVAPENQRS 39 (253)
T ss_pred hHHHHHHHHHh--CCcEEEEccCCCCc
Confidence 36778888866 68999999875543
No 183
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=63.23 E-value=54 Score=33.36 Aligned_cols=35 Identities=14% Similarity=0.061 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEe
Q 042731 88 HFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFI 132 (481)
Q Consensus 88 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (481)
.+.+++++. +||++|.+.. ...+|+++|||++.+.
T Consensus 364 ~l~~~i~~~-------~~dliig~s~---~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 364 DLEDLACAA-------GADLLITNSH---GRALAQRLALPLVRAG 398 (432)
T ss_pred HHHHHHhhc-------CCCEEEECcc---hHHHHHHcCCCEEEec
Confidence 446677777 8999999864 6889999999998644
No 184
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=63.00 E-value=44 Score=30.89 Aligned_cols=105 Identities=18% Similarity=0.174 Sum_probs=58.2
Q ss_pred HHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHH-hhhhHHH
Q 042731 11 ALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQAS-ASLEPHF 89 (481)
Q Consensus 11 ~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 89 (481)
.+++.+.+ .|-+|.+.++.+........... ..+-+.-+|.+.... ...+. ..+. ..+.... .-..+.-
T Consensus 119 ea~~~~~~-~~~rVflt~G~~~l~~f~~~~~~-~~~~~Rvlp~~~~~~---~~~~~--~~p~---~~Iia~~GPfs~~~n 188 (257)
T COG2099 119 EAAEAAKQ-LGRRVFLTTGRQNLAHFVAADAH-SHVLARVLPPPDVLA---KCEDL--GVPP---ARIIAMRGPFSEEDN 188 (257)
T ss_pred HHHHHHhc-cCCcEEEecCccchHHHhcCccc-ceEEEEEcCchHHHH---HHHhc--CCCh---hhEEEecCCcChHHH
Confidence 45677777 78788888887777666554320 234445555331101 00000 0010 0110000 1223445
Q ss_pred HHHHHHHhhccCCCCccEEEeCCCCc-----hHHHHHHHhCCceEEEe
Q 042731 90 KKLISELVNEQNGQKPLCIITDTFLG-----WCKETAQEYGIFHAIFI 132 (481)
Q Consensus 90 ~~ll~~~~~~~~~~~pD~vI~D~~~~-----~~~~~A~~lgiP~v~~~ 132 (481)
+.+++++ +.|+||+-..-. .=..+|+++|||+|.+-
T Consensus 189 ~all~q~-------~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~ 229 (257)
T COG2099 189 KALLEQY-------RIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIE 229 (257)
T ss_pred HHHHHHh-------CCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEe
Confidence 7899999 999999874322 22489999999999865
No 185
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=62.88 E-value=42 Score=31.46 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=33.8
Q ss_pred CcEEEecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEeccc
Q 042731 333 QGLVVHKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPL 379 (481)
Q Consensus 333 ~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~ 379 (481)
..+.+.+-++-.+|+.+++. +||-.+. +-+||+.+|+|++++..
T Consensus 183 ~~~~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 183 NVVIIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFGR 226 (269)
T ss_pred CeEEECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEecC
Confidence 34445566777899999775 8888764 66899999999999854
No 186
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.76 E-value=16 Score=34.35 Aligned_cols=53 Identities=11% Similarity=0.090 Sum_probs=37.9
Q ss_pred ccceeeccCchhHHHHHH------hCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCC
Q 042731 352 VSAFLSHCGWNSVLEALS------HGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 352 v~~~I~HGG~gt~~eal~------~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
++++|+-||=||++.++. .++|++++-. . .+|.. .....+++.+.+.++++++
T Consensus 36 ~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~--------G------~lGFL------~~~~~~~~~~~l~~i~~g~ 94 (265)
T PRK04885 36 PDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT--------G------HLGFY------TDWRPFEVDKLVIALAKDP 94 (265)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC--------C------Cceec------ccCCHHHHHHHHHHHHcCC
Confidence 345999999999999986 4889998822 1 12222 2345777888888888765
No 187
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=62.74 E-value=46 Score=34.13 Aligned_cols=35 Identities=26% Similarity=0.171 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEE
Q 042731 87 PHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIF 131 (481)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~ 131 (481)
..+.+++++. +||++|... ....+|.++|||++.+
T Consensus 385 ~e~~~~i~~~-------~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 385 RELLKLLLEY-------KADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHhhc-------CCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 4556777777 999999873 3678889999999874
No 188
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=62.48 E-value=15 Score=35.53 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=34.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHH----------HHHHHhCCceEEE
Q 042731 77 KFLQASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCK----------ETAQEYGIFHAIF 131 (481)
Q Consensus 77 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~----------~~A~~lgiP~v~~ 131 (481)
+|....+...+.+.++++++ +||++|+.+.+-++. .+.++++||.++-
T Consensus 60 yf~en~eea~~~i~~mv~~~-------~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 60 YFNENKEEALKKILEMVKKL-------KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred hhhhCHHHHHHHHHHHHHhc-------CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 44455566777788888999 999999997653221 3556799999973
No 189
>PLN02470 acetolactate synthase
Probab=62.18 E-value=41 Score=35.74 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=22.7
Q ss_pred CccceeeccCch------hHHHHHHhCCcEEecc
Q 042731 351 SVSAFLSHCGWN------SVLEALSHGVPIIGWP 378 (481)
Q Consensus 351 ~v~~~I~HGG~g------t~~eal~~GvP~l~~P 378 (481)
.++++++|.|-| .+++|...++|+|++.
T Consensus 76 ~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 76 KVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 455688888844 7789999999999995
No 190
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=61.54 E-value=89 Score=26.86 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=21.3
Q ss_pred cceeeccCch------hHHHHHHhCCcEEeccc
Q 042731 353 SAFLSHCGWN------SVLEALSHGVPIIGWPL 379 (481)
Q Consensus 353 ~~~I~HGG~g------t~~eal~~GvP~l~~P~ 379 (481)
+++++|+|-| .+.+|...++|+|++.-
T Consensus 62 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 62 VAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred EEEEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 3478888744 67799999999999953
No 191
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=61.16 E-value=75 Score=29.68 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCcch
Q 042731 8 PFLALARRLEETNKYTITLVNTPLNL 33 (481)
Q Consensus 8 P~l~LA~~L~~~~Gh~Vt~~~~~~~~ 33 (481)
-+.+|+++|++ .| +|+++.+....
T Consensus 20 Gi~aL~~~l~~-~g-~V~VvAP~~~~ 43 (257)
T PRK13932 20 GIHVLAASMKK-IG-RVTVVAPAEPH 43 (257)
T ss_pred HHHHHHHHHHh-CC-CEEEEcCCCCC
Confidence 46788999999 78 79988876544
No 192
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=61.14 E-value=62 Score=30.11 Aligned_cols=102 Identities=18% Similarity=0.119 Sum_probs=58.3
Q ss_pred HHHHHHHHhCCC-CEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHH-hhhhH
Q 042731 10 LALARRLEETNK-YTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQAS-ASLEP 87 (481)
Q Consensus 10 l~LA~~L~~~~G-h~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 87 (481)
-..++.|.+ .+ .+|.+.++....+.+.........+-+.-+|.+....+++.. .+.... ....+
T Consensus 119 ~eA~~~l~~-~~~~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~~~~~g~~~~-------------~iia~~GPfs~e 184 (249)
T PF02571_consen 119 EEAAELLKE-LGGGRIFLTTGSKNLPPFVPAPLPGERLFARVLPTPESALGFPPK-------------NIIAMQGPFSKE 184 (249)
T ss_pred HHHHHHHhh-cCCCCEEEeCchhhHHHHhhcccCCCEEEEEECCCccccCCCChh-------------hEEEEeCCCCHH
Confidence 355677777 66 788888887777666431111145555666754221121110 000000 11223
Q ss_pred HHHHHHHHHhhccCCCCccEEEeCCCCchH----HHHHHHhCCceEEEe
Q 042731 88 HFKKLISELVNEQNGQKPLCIITDTFLGWC----KETAQEYGIFHAIFI 132 (481)
Q Consensus 88 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~----~~~A~~lgiP~v~~~ 132 (481)
.-.++++++ +.|+||+-..-..+ ..+|+++|||++++.
T Consensus 185 ~n~al~~~~-------~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 226 (249)
T PF02571_consen 185 LNRALFRQY-------GIDVLVTKESGGSGFDEKIEAARELGIPVIVIK 226 (249)
T ss_pred HHHHHHHHc-------CCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 446789999 99999987422112 478999999999865
No 193
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=60.99 E-value=47 Score=33.70 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEe
Q 042731 88 HFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFI 132 (481)
Q Consensus 88 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (481)
.+.+.+++. +||+||.+.. ...+|+++|+|++.+.
T Consensus 362 el~~~i~~~-------~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 362 DLESLAKEE-------PVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHHhhcc-------CCCEEEECch---hHHHHHhcCCCEEEec
Confidence 445566666 8999999965 5789999999998644
No 194
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=60.80 E-value=37 Score=27.19 Aligned_cols=84 Identities=17% Similarity=0.195 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhhhhH
Q 042731 8 PFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQASASLEP 87 (481)
Q Consensus 8 P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (481)
-++.+|+.|.+ .|++|. +++...+.+.+ .|+.+..+.-. .+... .-.+
T Consensus 14 ~~~~~a~~l~~-~G~~i~--aT~gTa~~L~~-----~gi~~~~v~~~---~~~~~---------------------~~~~ 61 (116)
T cd01423 14 ELLPTAQKLSK-LGYKLY--ATEGTADFLLE-----NGIPVTPVAWP---SEEPQ---------------------NDKP 61 (116)
T ss_pred hHHHHHHHHHH-CCCEEE--EccHHHHHHHH-----cCCCceEeeec---cCCCC---------------------CCch
Confidence 46789999999 998883 45566677777 45544433210 00000 0013
Q ss_pred HHHHHHHHHhhccCCCCccEEEeCCC---------CchHHHHHHHhCCceEE
Q 042731 88 HFKKLISELVNEQNGQKPLCIITDTF---------LGWCKETAQEYGIFHAI 130 (481)
Q Consensus 88 ~~~~ll~~~~~~~~~~~pD~vI~D~~---------~~~~~~~A~~lgiP~v~ 130 (481)
.+.+++++- ++|+||..+. .......|-.+|||++.
T Consensus 62 ~i~~~i~~~-------~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 62 SLRELLAEG-------KIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred hHHHHHHcC-------CceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 456667765 8999998542 23456788899999973
No 195
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=60.07 E-value=56 Score=30.29 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCcchhhh
Q 042731 8 PFLALARRLEETNKYTITLVNTPLNLKKL 36 (481)
Q Consensus 8 P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i 36 (481)
-+.+|+++|++ .| +|+++.+...+...
T Consensus 15 Gi~aL~~~l~~-~g-~V~VvAP~~~~Sg~ 41 (244)
T TIGR00087 15 GIRALYQALKE-LG-EVTVVAPARQRSGT 41 (244)
T ss_pred hHHHHHHHHHh-CC-CEEEEeCCCCcccc
Confidence 46788999999 88 89999987655433
No 196
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=59.60 E-value=65 Score=27.63 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=20.8
Q ss_pred ccceeeccCc------hhHHHHHHhCCcEEeccc
Q 042731 352 VSAFLSHCGW------NSVLEALSHGVPIIGWPL 379 (481)
Q Consensus 352 v~~~I~HGG~------gt~~eal~~GvP~l~~P~ 379 (481)
..+++++.|- +.+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 3346676663 467799999999999964
No 197
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=58.91 E-value=80 Score=32.13 Aligned_cols=35 Identities=23% Similarity=0.199 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEe
Q 042731 88 HFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFI 132 (481)
Q Consensus 88 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (481)
.+.+.+++. +||++|.... ...+|+++|||++.+.
T Consensus 368 e~~~~i~~~-------~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 368 HLRSLLFTE-------PVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHhhc-------CCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 445666777 8999999864 6889999999998654
No 198
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=57.34 E-value=20 Score=31.68 Aligned_cols=43 Identities=26% Similarity=0.453 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHhhccCCCCc--cEEEeCCCCc-hHHHHHHHhCCceEEEechh
Q 042731 86 EPHFKKLISELVNEQNGQKP--LCIITDTFLG-WCKETAQEYGIFHAIFIGGG 135 (481)
Q Consensus 86 ~~~~~~ll~~~~~~~~~~~p--D~vI~D~~~~-~~~~~A~~lgiP~v~~~~~~ 135 (481)
...+.+++++. .+ .++|..++-. +|..+|+++|+|+|.+.++-
T Consensus 46 ~~~l~~~i~~~-------~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 46 IAQLEQLIEEL-------KPENVVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHHHHhC-------CCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 34556677776 44 4777776654 78899999999999887643
No 199
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=57.15 E-value=42 Score=33.94 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=22.9
Q ss_pred CccEEEeCCCCchHHHHHHHhCCceEEEec
Q 042731 104 KPLCIITDTFLGWCKETAQEYGIFHAIFIG 133 (481)
Q Consensus 104 ~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 133 (481)
+||++|..+. +..+|+++|||++.+..
T Consensus 350 ~pDl~Ig~s~---~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 350 RPDLAIGTTP---LVQYAKEKGIPALYYTN 376 (416)
T ss_pred CCCEEEeCCh---hhHHHHHhCCCEEEecC
Confidence 9999999844 78899999999987553
No 200
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=56.33 E-value=30 Score=29.71 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=35.5
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEec
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIP 52 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~ 52 (481)
|+.|-..-++.|++.|.+ .|+.|-=+-+++..+--.. .||+.+.+.
T Consensus 14 PGvGKtTl~~ki~e~L~~-~g~kvgGf~t~EVR~gGkR-----~GF~Ivdl~ 59 (179)
T COG1618 14 PGVGKTTLVLKIAEKLRE-KGYKVGGFITPEVREGGKR-----IGFKIVDLA 59 (179)
T ss_pred CCccHHHHHHHHHHHHHh-cCceeeeEEeeeeecCCeE-----eeeEEEEcc
Confidence 788888999999999999 9999987666655533333 677777766
No 201
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=56.17 E-value=1.5e+02 Score=26.55 Aligned_cols=148 Identities=19% Similarity=0.192 Sum_probs=76.9
Q ss_pred CeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHH
Q 042731 266 TSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVE 345 (481)
Q Consensus 266 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ 345 (481)
+.++.|..|.+. ..-+..|...|..+.++.... .+++.+-.. ..++....--.+..
T Consensus 10 k~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~---------------~~~l~~l~~--~~~i~~~~~~~~~~ 65 (205)
T TIGR01470 10 RAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEEL---------------ESELTLLAE--QGGITWLARCFDAD 65 (205)
T ss_pred CeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCC---------------CHHHHHHHH--cCCEEEEeCCCCHH
Confidence 557777777765 334566667787776654322 123322222 22443322112233
Q ss_pred hhcccCccceeeccCchhHH-----HHHHhCCcEEec--ccccchhhhHHHHHHHhcceEEeecc-CCcccCHHHHHHHH
Q 042731 346 ILSHRSVSAFLSHCGWNSVL-----EALSHGVPIIGW--PLAAEQFYNSKLLEEEMGVCVEIARG-MSCEVLKEDLSAKI 417 (481)
Q Consensus 346 ll~~~~v~~~I~HGG~gt~~-----eal~~GvP~l~~--P~~~DQ~~na~~v~~~lG~G~~~~~~-~~~~~~~~~l~~~i 417 (481)
.+..+++ +|..-|...+. +|-..|+|+-++ |-..| +..-..+.+- ++-+.+..+ ++.. -+..|++.|
T Consensus 66 dl~~~~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g-~l~iaisT~G~sP~-la~~lr~~i 140 (205)
T TIGR01470 66 ILEGAFL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRS-PVVVAISSGGAAPV-LARLLRERI 140 (205)
T ss_pred HhCCcEE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcC-CEEEEEECCCCCcH-HHHHHHHHH
Confidence 4555444 77777765333 445678888444 22222 2222233322 344444442 2222 346788888
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHH
Q 042731 418 ELVMNETEKGTDLRNKANEVKVIIKNA 444 (481)
Q Consensus 418 ~~vl~~~~~~~~~~~~a~~~~~~~~~~ 444 (481)
.+++... ...+-+...++++.+++.
T Consensus 141 e~~l~~~--~~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 141 ETLLPPS--LGDLATLAATWRDAVKKR 165 (205)
T ss_pred HHhcchh--HHHHHHHHHHHHHHHHhh
Confidence 8887543 235777777777777754
No 202
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=54.87 E-value=1.2e+02 Score=28.25 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCcch
Q 042731 8 PFLALARRLEETNKYTITLVNTPLNL 33 (481)
Q Consensus 8 P~l~LA~~L~~~~Gh~Vt~~~~~~~~ 33 (481)
-+.+|+++|++ +|+|+++.+....
T Consensus 15 Gi~aL~~~l~~--~~~V~VvAP~~~q 38 (253)
T PRK13935 15 GIIILAEYLSE--KHEVFVVAPDKER 38 (253)
T ss_pred HHHHHHHHHHh--CCcEEEEccCCCC
Confidence 46678888866 6899999986554
No 203
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=54.35 E-value=72 Score=29.69 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhhccCCCCccEEEeC--CCCc----hHHHHHHHhCCceEEEe
Q 042731 86 EPHFKKLISELVNEQNGQKPLCIITD--TFLG----WCKETAQEYGIFHAIFI 132 (481)
Q Consensus 86 ~~~~~~ll~~~~~~~~~~~pD~vI~D--~~~~----~~~~~A~~lgiP~v~~~ 132 (481)
.+.+.+++++. ++++||=- +|.. -+..+|+++|||++.|.
T Consensus 55 ~~~l~~~l~~~-------~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 55 EEGLAEFLREN-------GIDAVIDATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred HHHHHHHHHhC-------CCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 34557788888 89999933 3221 33478899999999865
No 204
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.93 E-value=27 Score=33.32 Aligned_cols=53 Identities=6% Similarity=0.073 Sum_probs=37.5
Q ss_pred ccceeeccCchhHHHHHHh----CCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCC
Q 042731 352 VSAFLSHCGWNSVLEALSH----GVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 352 v~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
++++|+-||=||++.++.. ++|++++-.. .+|.. ...+.+++.+++.++++++
T Consensus 65 ~Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL------t~~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 65 SDFLISLGGDGTLISLCRKAAEYDKFVLGIHAG--------------HLGFL------TDITVDEAEKFFQAFFQGE 121 (287)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCcEEEEeCC--------------CcccC------CcCCHHHHHHHHHHHHcCC
Confidence 3459999999999988663 7899888211 12221 2456788888888888765
No 205
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=53.93 E-value=60 Score=27.83 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=26.3
Q ss_pred cCHHHhhcccCccceeeccCchhHH---HHHHhCCcEEeccc
Q 042731 341 APQVEILSHRSVSAFLSHCGWNSVL---EALSHGVPIIGWPL 379 (481)
Q Consensus 341 ip~~~ll~~~~v~~~I~HGG~gt~~---eal~~GvP~l~~P~ 379 (481)
.+...++...+-..++--||.||+. |++.+++|+++++.
T Consensus 82 ~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 82 FARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred chHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 3344444433334677788888876 56889999999875
No 206
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=53.70 E-value=37 Score=30.07 Aligned_cols=106 Identities=20% Similarity=0.209 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCc
Q 042731 282 SQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGW 361 (481)
Q Consensus 282 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~ 361 (481)
++-.++.+.+...+..+++..|.- ..|.++|..+.+ ++-+=+ ||++ .=.++|.
T Consensus 66 ~~d~~l~~~l~~~~~dlvvLAGyM------------rIL~~~fl~~~~--grIlNI-----------HPSL--LP~f~G~ 118 (200)
T COG0299 66 AFDRALVEALDEYGPDLVVLAGYM------------RILGPEFLSRFE--GRILNI-----------HPSL--LPAFPGL 118 (200)
T ss_pred HHHHHHHHHHHhcCCCEEEEcchH------------HHcCHHHHHHhh--cceEec-----------Cccc--ccCCCCc
Confidence 344568888888888888777665 236677776665 332223 7886 8889999
Q ss_pred hhHHHHHHhCCcEEeccccc-chhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHH
Q 042731 362 NSVLEALSHGVPIIGWPLAA-EQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELV 420 (481)
Q Consensus 362 gt~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~v 420 (481)
.+..+|+.+|+..-++-.+. |-..-..-+- . -..+-+.. .-|.+.|.+.|.+.
T Consensus 119 h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII-~-Q~~Vpv~~----~Dt~etl~~RV~~~ 172 (200)
T COG0299 119 HAHEQALEAGVKVSGCTVHFVTEGVDTGPII-A-QAAVPVLP----GDTAETLEARVLEQ 172 (200)
T ss_pred hHHHHHHHcCCCccCcEEEEEccCCCCCCeE-E-EEeeeecC----CCCHHHHHHHHHHH
Confidence 99999999999987766432 3222111111 0 11222222 33788888888664
No 207
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=53.59 E-value=38 Score=34.77 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=18.9
Q ss_pred HHHHHHHHhCCCCEEEEEeCCc
Q 042731 10 LALARRLEETNKYTITLVNTPL 31 (481)
Q Consensus 10 l~LA~~L~~~~Gh~Vt~~~~~~ 31 (481)
.+||+++.. +|++||+++++.
T Consensus 286 ~alA~aa~~-~GA~VtlI~Gp~ 306 (475)
T PRK13982 286 FAIAAAAAA-AGAEVTLISGPV 306 (475)
T ss_pred HHHHHHHHH-CCCcEEEEeCCc
Confidence 579999999 999999999874
No 208
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.21 E-value=25 Score=33.78 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=38.8
Q ss_pred ccceeeccCchhHHHHHHh----CCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCC
Q 042731 352 VSAFLSHCGWNSVLEALSH----GVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 352 v~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
++++|+=||=||++.|... ++|++++-. . .+|.. ...+.+++.+++.+++++.
T Consensus 69 ~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~--------G------~lGFL------t~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 69 MKFAIVLGGDGTVLSAARQLAPCGIPLLTINT--------G------HLGFL------TEAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred cCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeC--------C------CCccc------ccCCHHHHHHHHHHHHcCC
Confidence 4569999999999999775 789999821 1 12211 2346788899999998876
No 209
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=53.18 E-value=47 Score=30.90 Aligned_cols=24 Identities=29% Similarity=0.210 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCcch
Q 042731 8 PFLALARRLEETNKYTITLVNTPLNL 33 (481)
Q Consensus 8 P~l~LA~~L~~~~Gh~Vt~~~~~~~~ 33 (481)
-+.+|+++|++ . |+|+++.+....
T Consensus 15 Gi~aL~~~l~~-~-~~V~VvAP~~~q 38 (250)
T PRK00346 15 GIRALAEALRE-L-ADVTVVAPDRER 38 (250)
T ss_pred hHHHHHHHHHh-C-CCEEEEeCCCCC
Confidence 46788999999 7 799999986554
No 210
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=52.87 E-value=1.1e+02 Score=28.74 Aligned_cols=30 Identities=10% Similarity=0.036 Sum_probs=21.6
Q ss_pred CccEEEeC----------CCCc---hHHHHHHHhCCceEEEec
Q 042731 104 KPLCIITD----------TFLG---WCKETAQEYGIFHAIFIG 133 (481)
Q Consensus 104 ~pD~vI~D----------~~~~---~~~~~A~~lgiP~v~~~~ 133 (481)
+||+||+. .+++ .|+.-|..+|||.+.++.
T Consensus 87 ~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 87 PPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred CCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 79999974 2222 455666778999999875
No 211
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=52.80 E-value=1e+02 Score=29.70 Aligned_cols=131 Identities=12% Similarity=0.005 Sum_probs=72.5
Q ss_pred eEEE-EEccccc--ccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecc--c
Q 042731 267 SVLY-VSFGSQN--TIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKW--A 341 (481)
Q Consensus 267 ~~V~-vs~Gs~~--~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~--i 341 (481)
+.|. +-.||.. ..+.+.+.++++.+...+.++++..|+.. +.. .-+.+.+. ..++...+- +
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~------e~~----~~~~i~~~----~~~~~l~g~~sL 244 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEH------EEQ----RAKRLAEG----FPYVEVLPKLSL 244 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHH------HHH----HHHHHHcc----CCcceecCCCCH
Confidence 3444 4444443 25678899999999877777665545431 100 11111111 112222222 3
Q ss_pred CH-HHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhh------HHHHHHHhcceEEeeccCCcccCHHHHH
Q 042731 342 PQ-VEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYN------SKLLEEEMGVCVEIARGMSCEVLKEDLS 414 (481)
Q Consensus 342 p~-~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~n------a~~v~~~lG~G~~~~~~~~~~~~~~~l~ 414 (481)
.+ ..++.++++ +|+.- .|.+.=|.+.|+|+|++=-..|...+ ...+. -...++ ..++++.+.
T Consensus 245 ~elaali~~a~l--~I~nD-SGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~---~~~~cm-----~~I~~e~V~ 313 (322)
T PRK10964 245 EQVARVLAGAKA--VVSVD-TGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACR---SPGKSM-----ADLSAETVF 313 (322)
T ss_pred HHHHHHHHhCCE--EEecC-CcHHHHHHHhCCCEEEEECCCCcccccCCCCCceeec---CCCccc-----ccCCHHHHH
Confidence 33 468888775 88875 57888999999999987322221111 11111 011122 468899999
Q ss_pred HHHHHHhc
Q 042731 415 AKIELVMN 422 (481)
Q Consensus 415 ~~i~~vl~ 422 (481)
+++.++|+
T Consensus 314 ~~~~~~l~ 321 (322)
T PRK10964 314 QKLETLIS 321 (322)
T ss_pred HHHHHHhh
Confidence 99988774
No 212
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=52.73 E-value=72 Score=31.36 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=24.5
Q ss_pred hhcccCccceeeccCchh---HHHHHHhCCcEEec
Q 042731 346 ILSHRSVSAFLSHCGWNS---VLEALSHGVPIIGW 377 (481)
Q Consensus 346 ll~~~~v~~~I~HGG~gt---~~eal~~GvP~l~~ 377 (481)
++..-+-+++|++||+-+ +..|...|+|+++.
T Consensus 86 i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 86 RIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 344333345999999986 88999999999875
No 213
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=52.68 E-value=68 Score=33.11 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEE
Q 042731 88 HFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAI 130 (481)
Q Consensus 88 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~ 130 (481)
.+.+.+++. +||++|.+ .....+|+++|||++-
T Consensus 384 e~~~~i~~~-------~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 384 ELYKMLKEA-------KADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHhhc-------CCCEEEec---CchhhhhhhcCCCEEE
Confidence 445667777 99999997 4577899999999984
No 214
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=52.46 E-value=1e+02 Score=26.20 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.1
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEE
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLV 27 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~ 27 (481)
++-|-..=.+.|++.|++ +|.+|.++
T Consensus 7 ~~~GKT~va~~L~~~l~~-~g~~V~~~ 32 (166)
T TIGR00347 7 TGVGKTVASSALAAKLKK-AGYSVGYY 32 (166)
T ss_pred CCccHHHHHHHHHHHHHH-CCCcEEEE
Confidence 355777778999999999 99999986
No 215
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=52.12 E-value=1.4e+02 Score=25.00 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=21.4
Q ss_pred ccceeeccCc------hhHHHHHHhCCcEEeccc
Q 042731 352 VSAFLSHCGW------NSVLEALSHGVPIIGWPL 379 (481)
Q Consensus 352 v~~~I~HGG~------gt~~eal~~GvP~l~~P~ 379 (481)
..++++|+|- +.+.+|...++|+|++.-
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 3358888664 467799999999999964
No 216
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=52.10 E-value=11 Score=37.18 Aligned_cols=115 Identities=13% Similarity=0.211 Sum_probs=63.5
Q ss_pred CCcEEE-ecccCHHHhhcccCccceeeccCchhHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeec--cCCccc
Q 042731 332 GQGLVV-HKWAPQVEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIAR--GMSCEV 408 (481)
Q Consensus 332 ~~~~~v-~~~ip~~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~--~~~~~~ 408 (481)
..+++. .+..+-.++|..+++ +||=-. +.+.|.+..++|+|....-.|.+... + |.-..... -....-
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~-----r-g~~~~~~~~~pg~~~~ 321 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKE-----R-GFYFDYEEDLPGPIVY 321 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT-----S-SBSS-TTTSSSS-EES
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEech-hHHHHHHHhCCCEEEEeccHHHHhhc-----c-CCCCchHhhCCCceeC
Confidence 345544 344567789999886 999864 57889999999999877655555322 1 22222100 001234
Q ss_pred CHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHH
Q 042731 409 LKEDLSAKIELVMNETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAMDQFL 463 (481)
Q Consensus 409 ~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~~~~~ 463 (481)
+.++|.++|..++++++ .++++-+++.+.+-.. .+|.++.+.++.++
T Consensus 322 ~~~eL~~~i~~~~~~~~---~~~~~~~~~~~~~~~~-----~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 322 NFEELIEAIENIIENPD---EYKEKREKFRDKFFKY-----NDGNSSERIVNYIF 368 (369)
T ss_dssp SHHHHHHHHTTHHHHHH---HTHHHHHHHHHHHSTT-------S-HHHHHHHHHH
T ss_pred CHHHHHHHHHhhhhCCH---HHHHHHHHHHHHhCCC-----CCchHHHHHHHHHh
Confidence 67999999999887651 3455566666666432 45665555555443
No 217
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=51.70 E-value=73 Score=29.35 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=23.0
Q ss_pred ccEEE-eCCCCc-hHHHHHHHhCCceEEEech
Q 042731 105 PLCII-TDTFLG-WCKETAQEYGIFHAIFIGG 134 (481)
Q Consensus 105 pD~vI-~D~~~~-~~~~~A~~lgiP~v~~~~~ 134 (481)
||+++ .|+..- -|..-|.++|||.|.+.-+
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 88665 666543 7788899999999997653
No 218
>PRK09620 hypothetical protein; Provisional
Probab=51.33 E-value=46 Score=30.52 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCCEEEEEeCC
Q 042731 10 LALARRLEETNKYTITLVNTP 30 (481)
Q Consensus 10 l~LA~~L~~~~Gh~Vt~~~~~ 30 (481)
..||++|.+ +|++|+++...
T Consensus 33 s~LA~~L~~-~Ga~V~li~g~ 52 (229)
T PRK09620 33 RIIAEELIS-KGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHH-CCCeEEEEeCC
Confidence 578999999 99999999864
No 219
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=50.97 E-value=58 Score=28.69 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEec
Q 042731 8 PFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIP 52 (481)
Q Consensus 8 P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~ 52 (481)
-++.||+.|.+ .|+++. ++....+.+++ .|+.+..+.
T Consensus 12 ~l~~lAk~L~~-lGf~I~--AT~GTAk~L~e-----~GI~v~~V~ 48 (187)
T cd01421 12 GLVEFAKELVE-LGVEIL--STGGTAKFLKE-----AGIPVTDVS 48 (187)
T ss_pred cHHHHHHHHHH-CCCEEE--EccHHHHHHHH-----cCCeEEEhh
Confidence 36789999999 999984 55567778888 666666555
No 220
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=50.90 E-value=1.3e+02 Score=24.04 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=26.2
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcc
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLN 32 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~ 32 (481)
|+-.|.....-++..|++ .|++|++......
T Consensus 8 ~~e~H~lG~~~~~~~l~~-~G~~V~~lg~~~~ 38 (119)
T cd02067 8 GGDGHDIGKNIVARALRD-AGFEVIDLGVDVP 38 (119)
T ss_pred CCchhhHHHHHHHHHHHH-CCCEEEECCCCCC
Confidence 456799999999999999 9999999876443
No 221
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=50.66 E-value=29 Score=34.64 Aligned_cols=49 Identities=8% Similarity=0.053 Sum_probs=34.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchH----------HHHHHHhCCceEEEe
Q 042731 77 KFLQASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWC----------KETAQEYGIFHAIFI 132 (481)
Q Consensus 77 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~----------~~~A~~lgiP~v~~~ 132 (481)
+|....+...+.+.++++++ +||++|+.+.+-++ ..+.+++|||.+.-.
T Consensus 56 Yf~en~eea~~~i~~mv~k~-------~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 56 FFGENLEEAVARVLEMLKDK-------EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred hhhhCHHHHHHHHHHHHHhc-------CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 34444556667778888888 99999999765322 134567999999743
No 222
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=50.64 E-value=1.2e+02 Score=27.51 Aligned_cols=89 Identities=18% Similarity=0.228 Sum_probs=50.9
Q ss_pred CCChHHHHHHHHHHHhCCCCEEEEEeCCc----chhhhhhcCCCC------CCeEEEEecCCCCCCCCCCCCCCCCCCCC
Q 042731 3 QGHIIPFLALARRLEETNKYTITLVNTPL----NLKKLKSSLPQN------SSIHLLEIPFNSVEHDLPPCTENTDSIPY 72 (481)
Q Consensus 3 ~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~----~~~~i~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 72 (481)
.|---=..+++--+.+ .||.|++++++. +...+++.+.+. ..+.|.++... + .
T Consensus 39 tGKSvLsqr~~YG~L~-~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~------~--------~-- 101 (235)
T COG2874 39 TGKSVLSQRFAYGFLM-NGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLE------P--------V-- 101 (235)
T ss_pred ccHHHHHHHHHHHHHh-CCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccc------c--------c--
Confidence 3444445677888888 899999999985 344455544321 23333333211 0 0
Q ss_pred CchHHHHHHHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHH
Q 042731 73 HLFPKFLQASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCK 118 (481)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~ 118 (481)
..-........+.+.+.++.+ +-|+||.|.++..+.
T Consensus 102 ---~~~~~~~~~~L~~l~~~~k~~-------~~dViIIDSls~~~~ 137 (235)
T COG2874 102 ---NWGRRSARKLLDLLLEFIKRW-------EKDVIIIDSLSAFAT 137 (235)
T ss_pred ---ccChHHHHHHHHHHHhhHHhh-------cCCEEEEecccHHhh
Confidence 011112233445556666666 789999998876443
No 223
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=50.57 E-value=29 Score=34.64 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=34.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchH----------HHHHHHhCCceEEEe
Q 042731 77 KFLQASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWC----------KETAQEYGIFHAIFI 132 (481)
Q Consensus 77 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~----------~~~A~~lgiP~v~~~ 132 (481)
+|....+...+.+.++++++ +||++|+.+.+-++ ..+.+++|||.+.-.
T Consensus 56 Yf~en~eea~~~i~~mv~k~-------~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 56 FFGENLEEAKAKVLEMIKGA-------NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred hhhhCHHHHHHHHHHHHHhc-------CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 34444556667778888888 99999999765322 134567999999743
No 224
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.14 E-value=32 Score=32.94 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=39.0
Q ss_pred ccceeeccCchhHHHHHH----hCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCC
Q 042731 352 VSAFLSHCGWNSVLEALS----HGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 352 v~~~I~HGG~gt~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
++++|+=||=||++.|.+ .++|++++-. . .+|... .++.+++.+++.+++++.
T Consensus 69 ~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~--------G------~lGFL~------~~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 69 CDLVAVLGGDGTFLSVAREIAPRAVPIIGINQ--------G------HLGFLT------QIPREYMTDKLLPVLEGK 125 (296)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCEEEEec--------C------CCeEee------ccCHHHHHHHHHHHHcCC
Confidence 445999999999999975 3789998821 1 133322 356788999999999875
No 225
>PLN02929 NADH kinase
Probab=49.04 E-value=33 Score=32.79 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=42.6
Q ss_pred ccceeeccCchhHHHHHH---hCCcEEecccccc------hhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhc
Q 042731 352 VSAFLSHCGWNSVLEALS---HGVPIIGWPLAAE------QFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMN 422 (481)
Q Consensus 352 v~~~I~HGG~gt~~eal~---~GvP~l~~P~~~D------Q~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~ 422 (481)
++++|+-||=||++.|.. .++|++++=.... +..|.-. +.+ -+|... ..+.+++.+.|.++++
T Consensus 65 ~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~r-~lGfL~------~~~~~~~~~~L~~il~ 136 (301)
T PLN02929 65 VDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-ARR-STGHLC------AATAEDFEQVLDDVLF 136 (301)
T ss_pred CCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-ccc-Cccccc------cCCHHHHHHHHHHHHc
Confidence 446999999999999855 4789998855321 1222211 111 245333 3467899999999998
Q ss_pred CC
Q 042731 423 ET 424 (481)
Q Consensus 423 ~~ 424 (481)
+.
T Consensus 137 g~ 138 (301)
T PLN02929 137 GR 138 (301)
T ss_pred CC
Confidence 75
No 226
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.94 E-value=34 Score=32.93 Aligned_cols=53 Identities=28% Similarity=0.345 Sum_probs=39.2
Q ss_pred ccceeeccCchhHHHHHHh----CCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCC
Q 042731 352 VSAFLSHCGWNSVLEALSH----GVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 352 v~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
++++|+=||=||++.|+.. ++|++++... .+|... ....+++.+++.+++++.
T Consensus 73 ~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~------~~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 73 CELVLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLA------EAEAEDLDEAVERVVDRD 129 (306)
T ss_pred CCEEEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceec------cCCHHHHHHHHHHHHcCC
Confidence 4459999999999998764 8899998331 133332 345788889999998876
No 227
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=48.81 E-value=2.3e+02 Score=26.43 Aligned_cols=32 Identities=9% Similarity=0.033 Sum_probs=27.2
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcch
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNL 33 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~ 33 (481)
|+.|-..-.+.++...++ +|..|.|++.+...
T Consensus 45 pGtGKT~l~~qf~~~~a~-~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 45 SDTGKSLMVEQFAVTQAS-RGNPVLFVTVESPA 76 (259)
T ss_pred CCCCHHHHHHHHHHHHHh-CCCcEEEEEecCCc
Confidence 678888889999988888 89999999987543
No 228
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=48.74 E-value=1.5e+02 Score=27.93 Aligned_cols=25 Identities=8% Similarity=-0.077 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCCcch
Q 042731 7 IPFLALARRLEETNKYTITLVNTPLNL 33 (481)
Q Consensus 7 ~P~l~LA~~L~~~~Gh~Vt~~~~~~~~ 33 (481)
--+.+|++.|.+ .| +|+++.+....
T Consensus 14 pGi~aL~~al~~-~g-~V~VvAP~~eq 38 (266)
T PRK13934 14 PGLRLLYEFVSP-LG-EVDVVAPETPK 38 (266)
T ss_pred HHHHHHHHHHHh-CC-cEEEEccCCCC
Confidence 346788999988 78 79999876554
No 229
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=48.16 E-value=53 Score=34.80 Aligned_cols=27 Identities=11% Similarity=0.348 Sum_probs=21.4
Q ss_pred ccceeeccCch------hHHHHHHhCCcEEecc
Q 042731 352 VSAFLSHCGWN------SVLEALSHGVPIIGWP 378 (481)
Q Consensus 352 v~~~I~HGG~g------t~~eal~~GvP~l~~P 378 (481)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 33478888855 6789999999999984
No 230
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=47.73 E-value=39 Score=32.11 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=49.3
Q ss_pred ccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceee
Q 042731 278 TIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLS 357 (481)
Q Consensus 278 ~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~ 357 (481)
..+.+...++.+++.....+.||.+.++. .-+.+.++++...+-.+|.+ ||-
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~--------------------------ga~rlL~~ld~~~~~~~pK~--~iG 96 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGGY--------------------------GANRLLPYLDYDLIRANPKI--FVG 96 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCcC--------------------------CHHHhhhhCCHHHHhhCCeE--EEE
Confidence 34567788899999999999999998773 11123355555555556554 666
Q ss_pred ccCchhHHHHHHh--CCcEEecccc
Q 042731 358 HCGWNSVLEALSH--GVPIIGWPLA 380 (481)
Q Consensus 358 HGG~gt~~eal~~--GvP~l~~P~~ 380 (481)
..-..++.-+++. |++.+--|..
T Consensus 97 ySDiTaL~~~l~~~~g~~t~hGp~~ 121 (282)
T cd07025 97 YSDITALHLALYAKTGLVTFHGPML 121 (282)
T ss_pred ecHHHHHHHHHHHhcCceEEECccc
Confidence 6666666666543 6666666654
No 231
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=47.63 E-value=2.4e+02 Score=26.25 Aligned_cols=80 Identities=20% Similarity=0.375 Sum_probs=51.4
Q ss_pred CcEEEecccCH---HHhhcccCccceeec---cCch-hHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCC
Q 042731 333 QGLVVHKWAPQ---VEILSHRSVSAFLSH---CGWN-SVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMS 405 (481)
Q Consensus 333 ~~~~v~~~ip~---~~ll~~~~v~~~I~H---GG~g-t~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~ 405 (481)
.++...++++. ..++..+++ +|.. .|.| ++.||+++|+|+|..... .....+. .-+.|. +..
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~~-~~~~g~-~~~--- 325 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVVE-DGETGL-LVP--- 325 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHhc-CCCceE-ecC---
Confidence 56777788883 345665654 6655 3554 469999999999776443 2222233 302466 433
Q ss_pred cccCHHHHHHHHHHHhcCC
Q 042731 406 CEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 406 ~~~~~~~l~~~i~~vl~~~ 424 (481)
....+.+.+++..++++.
T Consensus 326 -~~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 326 -PGDVEELADALEQLLEDP 343 (381)
T ss_pred -CCCHHHHHHHHHHHhcCH
Confidence 126899999999999887
No 232
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.52 E-value=36 Score=32.53 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=38.6
Q ss_pred ccceeeccCchhHHHHHHh----CCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCC
Q 042731 352 VSAFLSHCGWNSVLEALSH----GVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 352 v~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
++++|+=||=||++.++.. ++|++++-.. .+|.. ...+.+++.+++.+++++.
T Consensus 65 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL------t~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 65 ADMVISIGGDGTFLRTATYVGNSNIPILGINTG--------------RLGFL------ATVSKEEIEETIDELLNGD 121 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEecC--------------CCCcc------cccCHHHHHHHHHHHHcCC
Confidence 3459999999999999873 7899988221 12322 2356788889999998876
No 233
>PRK04940 hypothetical protein; Provisional
Probab=46.71 E-value=55 Score=28.73 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=25.9
Q ss_pred CccEEEeCCCCc-hHHHHHHHhCCceEEEech
Q 042731 104 KPLCIITDTFLG-WCKETAQEYGIFHAIFIGG 134 (481)
Q Consensus 104 ~pD~vI~D~~~~-~~~~~A~~lgiP~v~~~~~ 134 (481)
+++++|..++-. ||-.+|+++|+|+|.+.++
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 467888887654 8999999999999998874
No 234
>COG1422 Predicted membrane protein [Function unknown]
Probab=46.60 E-value=31 Score=30.51 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=56.1
Q ss_pred hHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 042731 363 SVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKANEVKVIIK 442 (481)
Q Consensus 363 t~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~ 442 (481)
++.+++..+.=.+..|...=++..-..+. . | ..-....+-+++.+-|.++-+++++.+++++++++
T Consensus 24 ~~~~~i~~~ln~~f~P~i~~~~p~lvilV-~-a------------vi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~ 89 (201)
T COG1422 24 SIRDGIGGALNVVFGPLLSPLPPHLVILV-A-A------------VITGLYITILQKLLIDQEKMKELQKMMKEFQKEFR 89 (201)
T ss_pred HHHHHHHHHHHHHHhhhccccccHHHHHH-H-H------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 55566666655566665544444332222 1 1 12334567788888898788899999999999999
Q ss_pred HHhhcccCCCCchHHHHHHHHHHHHhhh
Q 042731 443 NAVRNETNFKGSSVKAMDQFLNAALIMR 470 (481)
Q Consensus 443 ~~~~~~~~~~gs~~~~~~~~~~~~~~~~ 470 (481)
+| ++.| ...+++++-+.=.+..
T Consensus 90 eA-----~~~~-d~~~lkkLq~~qmem~ 111 (201)
T COG1422 90 EA-----QESG-DMKKLKKLQEKQMEMM 111 (201)
T ss_pred HH-----HHhC-CHHHHHHHHHHHHHHH
Confidence 98 5555 3566776666544443
No 235
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=46.26 E-value=76 Score=29.05 Aligned_cols=97 Identities=12% Similarity=0.180 Sum_probs=51.2
Q ss_pred CCeEEEEEcccccc---cCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccC-C-CcEEEec
Q 042731 265 YTSVLYVSFGSQNT---IAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCS-G-QGLVVHK 339 (481)
Q Consensus 265 ~~~~V~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~v~~ 339 (481)
+++.|.+..|+... .+.+.+.++++.+...+..+++..+.. +.. .+..+....+ . ..+.+.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~-------~~~------~~~~~~~~~~~~~~~~~~~~ 170 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE-------EQE------KEIADQIAAGLQNPVINLAG 170 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH-------HHH------HHHHHHHHTTHTTTTEEETT
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch-------HHH------HHHHHHHHHhcccceEeecC
Confidence 35577777777652 467889999999988886665544332 100 1111111100 1 1233322
Q ss_pred ccC--H-HHhhcccCccceeeccCchhHHHHHHhCCcEEec
Q 042731 340 WAP--Q-VEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGW 377 (481)
Q Consensus 340 ~ip--~-~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~ 377 (481)
-.. + ..++.++++ +|+.- .|.+.=|.+.|+|+|++
T Consensus 171 ~~~l~e~~ali~~a~~--~I~~D-tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 171 KTSLRELAALISRADL--VIGND-TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp TS-HHHHHHHHHTSSE--EEEES-SHHHHHHHHTT--EEEE
T ss_pred CCCHHHHHHHHhcCCE--EEecC-ChHHHHHHHHhCCEEEE
Confidence 222 2 467888775 88775 47888899999999998
No 236
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=45.92 E-value=1.5e+02 Score=27.47 Aligned_cols=41 Identities=17% Similarity=-0.021 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHhhccCCCCccEEEeCCCCc------hHHHHHHHhCCceEEEe
Q 042731 85 LEPHFKKLISELVNEQNGQKPLCIITDTFLG------WCKETAQEYGIFHAIFI 132 (481)
Q Consensus 85 ~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~------~~~~~A~~lgiP~v~~~ 132 (481)
-.+.+.+++++. +.|+||=-.+=+ -+..+|+..|||++.|-
T Consensus 54 ~~e~l~~~l~e~-------~i~llIDATHPyAa~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 54 GAEGLAAFLREE-------GIDLLIDATHPYAARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred CHHHHHHHHHHc-------CCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 345668999999 999999443322 23478999999999865
No 237
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.71 E-value=39 Score=31.87 Aligned_cols=53 Identities=17% Similarity=0.330 Sum_probs=38.0
Q ss_pred ccceeeccCchhHHHHHH-hCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCC
Q 042731 352 VSAFLSHCGWNSVLEALS-HGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 352 v~~~I~HGG~gt~~eal~-~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
++++|+=||=||++.++. ..+|++++-. . .+|.. ...+.+++.+++.+++++.
T Consensus 53 ~D~vi~lGGDGT~L~a~~~~~~PilGIN~--------G------~lGFL------~~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 53 ADVIITIGGDGTILRTLQRAKGPILGINM--------G------GLGFL------TEIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCEEEEEcCcHHHHHHHHHcCCCEEEEEC--------C------CCccC------cccCHHHHHHHHHHHHcCC
Confidence 446999999999999988 4568877721 1 12322 2456788899999998875
No 238
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.53 E-value=37 Score=32.40 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=38.3
Q ss_pred ccceeeccCchhHHHHHH----hCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCC
Q 042731 352 VSAFLSHCGWNSVLEALS----HGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 352 v~~~I~HGG~gt~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
++++|+=||=||++.++. .++|++.+-.. .+|.. ..++++++.+++.+++++.
T Consensus 64 ~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G--------------~lGFl------~~~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 64 ADLAIVVGGDGNMLGAARVLARYDIKVIGINRG--------------NLGFL------TDLDPDNALQQLSDVLEGH 120 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCeEEEEECC--------------CCCcc------cccCHHHHHHHHHHHHcCC
Confidence 445999999999999975 37898888221 12322 2345788999999998875
No 239
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=45.25 E-value=45 Score=33.26 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=30.2
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhh
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLK 37 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~ 37 (481)
|+.|--.=+|.++..|++ +| .|.|+++++....++
T Consensus 102 PGIGKSTLLLQva~~lA~-~~-~vLYVsGEES~~Qik 136 (456)
T COG1066 102 PGIGKSTLLLQVAARLAK-RG-KVLYVSGEESLQQIK 136 (456)
T ss_pred CCCCHHHHHHHHHHHHHh-cC-cEEEEeCCcCHHHHH
Confidence 677888889999999999 89 999999998766554
No 240
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=45.22 E-value=32 Score=35.89 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEe
Q 042731 88 HFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFI 132 (481)
Q Consensus 88 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (481)
.+.+.+++. +||+||.+. ....+|+++|||++.+.
T Consensus 353 el~~~i~~~-------~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAEA-------APELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHhc-------CCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 455666777 899999886 47789999999998754
No 241
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=45.21 E-value=3.3e+02 Score=27.21 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=34.5
Q ss_pred ceeeccCchhHHHHHHhCCcEE-----------ecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhc
Q 042731 354 AFLSHCGWNSVLEALSHGVPII-----------GWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMN 422 (481)
Q Consensus 354 ~~I~HGG~gt~~eal~~GvP~l-----------~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~ 422 (481)
++-|+ |..++..++.+|.|+- .+|..+. |+-++.+.+-.. ...++.+++..+|.+++.
T Consensus 247 GVEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~---~tf~~a~~~~d~-------vvvV~~~ei~aaI~~l~e 315 (457)
T KOG1250|consen 247 GVETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGE---NTFELAQKLVDR-------VVVVEDDEIAAAILRLFE 315 (457)
T ss_pred EEeec-CcHHHHHHHhcCCeeecccccchhcccccchhhH---HHHHHHHhcCce-------EEEeccHHHHHHHHHHHH
Confidence 34555 4567888888888763 2222222 333333221111 134668889999999987
Q ss_pred CC
Q 042731 423 ET 424 (481)
Q Consensus 423 ~~ 424 (481)
+.
T Consensus 316 de 317 (457)
T KOG1250|consen 316 DE 317 (457)
T ss_pred hh
Confidence 75
No 242
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=45.20 E-value=30 Score=35.76 Aligned_cols=37 Identities=14% Similarity=0.045 Sum_probs=30.3
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhh
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKS 38 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~ 38 (481)
|+.|-..=.+.++...++ +|..|.|++.++..+.+..
T Consensus 272 ~G~GKt~l~~~f~~~~~~-~ge~~~y~s~eEs~~~i~~ 308 (484)
T TIGR02655 272 TGTGKTLLVSKFLENACA-NKERAILFAYEESRAQLLR 308 (484)
T ss_pred CCCCHHHHHHHHHHHHHH-CCCeEEEEEeeCCHHHHHH
Confidence 677888888999999999 8999999999876555443
No 243
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=44.96 E-value=97 Score=30.01 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhhhhH
Q 042731 8 PFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQASASLEP 87 (481)
Q Consensus 8 P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (481)
-+..|++.|.+ .|++|.+.++++..+..+... .. .+ .... ++.. .....
T Consensus 195 ~~~~li~~l~~-~~~~ivl~G~~~e~~~~~~i~---~~-----~~---------~~~~---~l~g----------~~sL~ 243 (334)
T TIGR02195 195 HYAELAKRLID-QGYQVVLFGSAKDHPAGNEIE---AL-----LP---------GELR---NLAG----------ETSLD 243 (334)
T ss_pred HHHHHHHHHHH-CCCEEEEEEChhhHHHHHHHH---Hh-----CC---------cccc---cCCC----------CCCHH
Confidence 46789999988 899999998876655443311 00 00 0000 0000 01122
Q ss_pred HHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEec
Q 042731 88 HFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIG 133 (481)
Q Consensus 88 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 133 (481)
.+..+++ +-|++|+.- ....++|..+|+|.|.++.
T Consensus 244 el~ali~---------~a~l~I~~D--SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 244 EAVDLIA---------LAKAVVTND--SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred HHHHHHH---------hCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 3334444 358999773 5577899999999998765
No 244
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=44.95 E-value=2.3e+02 Score=28.17 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=28.6
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhh
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLK 37 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~ 37 (481)
|+.|-..=++.+|..+.+ .|..|.|++.++..+.+.
T Consensus 91 pG~GKStLllq~a~~~a~-~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 91 PGIGKSTLLLQVAARLAK-RGGKVLYVSGEESPEQIK 126 (372)
T ss_pred CCCCHHHHHHHHHHHHHh-cCCeEEEEECCcCHHHHH
Confidence 567777888999999999 899999999876554443
No 245
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=44.94 E-value=16 Score=37.39 Aligned_cols=60 Identities=12% Similarity=0.157 Sum_probs=39.5
Q ss_pred hHHHHHHhCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCChhhHHHHHHH
Q 042731 363 SVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNETEKGTDLRNKA 434 (481)
Q Consensus 363 t~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~~a 434 (481)
++.||+++|+|+++.=.. .=+..+. +.--|..+++ ..-....+++++.++..|+ .++.+.
T Consensus 381 v~IEAMa~glPvvAt~~G----GP~EiV~-~~~tG~l~dp---~~e~~~~~a~~~~kl~~~p----~l~~~~ 440 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNNG----GPAEIVV-HGVTGLLIDP---GQEAVAELADALLKLRRDP----ELWARM 440 (495)
T ss_pred eeHHHHhcCCCEEEecCC----CceEEEE-cCCcceeeCC---chHHHHHHHHHHHHHhcCH----HHHHHH
Confidence 788999999999998332 2222233 2135666665 3333447999999999999 554443
No 246
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=44.84 E-value=2.8e+02 Score=26.35 Aligned_cols=100 Identities=18% Similarity=0.125 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCCcchhhh---hhcCC-CC--CCeEEEEecCCCCCCC-CCCCCCCCCCCCCCchHHHH
Q 042731 7 IPFLALARRLEETNKYTITLVNTPLNLKKL---KSSLP-QN--SSIHLLEIPFNSVEHD-LPPCTENTDSIPYHLFPKFL 79 (481)
Q Consensus 7 ~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i---~~~~~-~~--~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~ 79 (481)
.+.+.|++.|.+ .|++|.+++.+...... ..... +. .+.+++-+|.|...++ .......
T Consensus 11 ~r~~~~~~~l~~-~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~------------- 76 (287)
T TIGR02853 11 ARQLELIRKLEE-LDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFS------------- 76 (287)
T ss_pred HHHHHHHHHHHH-CCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccc-------------
Confidence 356889999999 99999999987321101 00000 00 3455555565411111 0000000
Q ss_pred HHHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHH-HHHHhCCceEE
Q 042731 80 QASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKE-TAQEYGIFHAI 130 (481)
Q Consensus 80 ~~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~-~A~~lgiP~v~ 130 (481)
..-...-.++++.+ ++.++++......-.. +|++.||+++-
T Consensus 77 ---~~~~~l~~~~l~~~-------~~~~~~~~G~~~~~l~~~a~~~gi~v~~ 118 (287)
T TIGR02853 77 ---NEKVVLTPELLEST-------KGHCTIYVGISNPYLEQLAADAGVKLIE 118 (287)
T ss_pred ---cCCccccHHHHHhc-------CCCCEEEEecCCHHHHHHHHHCCCeEEE
Confidence 00011114678888 7777777766655544 99999999985
No 247
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=44.50 E-value=1.1e+02 Score=34.64 Aligned_cols=37 Identities=14% Similarity=-0.030 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEe
Q 042731 86 EPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFI 132 (481)
Q Consensus 86 ~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (481)
...+.+++++. +||++|+... ...+|+++|||++-..
T Consensus 378 ~~el~~~i~~~-------~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 378 TAGLLRVMREK-------MPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred HHHHHHHHHhc-------CCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 34556777777 9999999765 5779999999999654
No 248
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=43.92 E-value=1.6e+02 Score=29.38 Aligned_cols=36 Identities=31% Similarity=0.296 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEe
Q 042731 87 PHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFI 132 (481)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (481)
..+.+.+++. +||++|.+.. ....++++|||++.+.
T Consensus 338 ~~~~~~~~~~-------~pdl~ig~~~---~~~~~~~~~ip~~~~~ 373 (399)
T cd00316 338 EELEELIREL-------KPDLIIGGSK---GRYIAKKLGIPLVRIG 373 (399)
T ss_pred HHHHHHHhhc-------CCCEEEECCc---HHHHHHHhCCCEEEcC
Confidence 3445666777 8999999964 6778888999998644
No 249
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.87 E-value=50 Score=31.03 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=37.5
Q ss_pred ccceeeccCchhHHHHHHh-----CCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCC
Q 042731 352 VSAFLSHCGWNSVLEALSH-----GVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 352 v~~~I~HGG~gt~~eal~~-----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
++++|+=||=||++.++.. .+|++.+-.. . .+|.. ...+.+++.+++.++++++
T Consensus 40 ~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~-------G------~lGFL------~~~~~~~~~~~l~~i~~g~ 98 (264)
T PRK03501 40 ANIIVSIGGDGTFLQAVRKTGFREDCLYAGISTK-------D------QLGFY------CDFHIDDLDKMIQAITKEE 98 (264)
T ss_pred ccEEEEECCcHHHHHHHHHhcccCCCeEEeEecC-------C------CCeEc------ccCCHHHHHHHHHHHHcCC
Confidence 3459999999999999874 5677777220 0 12322 2356788888998888765
No 250
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=43.59 E-value=31 Score=34.90 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEe
Q 042731 86 EPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFI 132 (481)
Q Consensus 86 ~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (481)
...+.+++++. +||++|.... ...+|+++|||+..+.
T Consensus 358 ~~e~~~~i~~~-------~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 358 HYELEEFVKRL-------KPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHHHh-------CCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 34556777887 9999999976 7779999999998654
No 251
>PRK08322 acetolactate synthase; Reviewed
Probab=43.36 E-value=67 Score=33.75 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=21.3
Q ss_pred ccceeeccCc------hhHHHHHHhCCcEEecc
Q 042731 352 VSAFLSHCGW------NSVLEALSHGVPIIGWP 378 (481)
Q Consensus 352 v~~~I~HGG~------gt~~eal~~GvP~l~~P 378 (481)
.+++++|.|- +.+.+|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 3447878774 47889999999999985
No 252
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=43.20 E-value=50 Score=30.07 Aligned_cols=42 Identities=24% Similarity=0.140 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhccCCCCccEEEeCCCCc--hHHHHHHH----hCCceEEEechh
Q 042731 87 PHFKKLISELVNEQNGQKPLCIITDTFLG--WCKETAQE----YGIFHAIFIGGG 135 (481)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~--~~~~~A~~----lgiP~v~~~~~~ 135 (481)
+.....+++| +||++|+-.-.+ ++...|++ .|||||++.-.|
T Consensus 50 ~~~~~~~~~~-------~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p 97 (277)
T PRK00994 50 EVVKKMLEEW-------KPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAP 97 (277)
T ss_pred HHHHHHHHhh-------CCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCC
Confidence 3446677899 999888764333 55566665 499999987654
No 253
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=43.19 E-value=34 Score=35.63 Aligned_cols=35 Identities=11% Similarity=0.058 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEe
Q 042731 88 HFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFI 132 (481)
Q Consensus 88 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (481)
++++++... +||++|.+.. +..+|+++|||++.+.
T Consensus 428 ~l~~~l~~~-------~~DlliG~s~---~k~~a~~~giPlir~g 462 (515)
T TIGR01286 428 HLRSLVFTE-------PVDFLIGNSY---GKYIQRDTLVPLIRIG 462 (515)
T ss_pred HHHHHHhhc-------CCCEEEECch---HHHHHHHcCCCEEEec
Confidence 456677777 8999999864 7889999999998754
No 254
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=43.13 E-value=35 Score=35.58 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEe
Q 042731 87 PHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFI 132 (481)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (481)
..+.+.|++. +||+||.+. +...+|+++|||++.+.
T Consensus 364 ~ei~~~I~~~-------~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 364 TEVGDMIARV-------EPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHhc-------CCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 3446677777 899999996 46677999999998755
No 255
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=42.74 E-value=25 Score=31.03 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCc
Q 042731 9 FLALARRLEETNKYTITLVNTPL 31 (481)
Q Consensus 9 ~l~LA~~L~~~~Gh~Vt~~~~~~ 31 (481)
-.+||+++.. +|++|+++.++.
T Consensus 32 G~~lA~~~~~-~Ga~V~li~g~~ 53 (185)
T PF04127_consen 32 GAALAEEAAR-RGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHH-TT-EEEEEE-TT
T ss_pred HHHHHHHHHH-CCCEEEEEecCc
Confidence 3579999999 999999999883
No 256
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=42.58 E-value=45 Score=32.15 Aligned_cols=74 Identities=11% Similarity=0.002 Sum_probs=47.7
Q ss_pred cCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeec
Q 042731 279 IAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSH 358 (481)
Q Consensus 279 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~H 358 (481)
.+.+....+.+++.....+.||.+.++. .-+.+.++++...+-.+|++ ||-.
T Consensus 50 ~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~--------------------------g~~rlL~~lD~~~i~~~PK~--fiGy 101 (308)
T cd07062 50 SPEERAEELMAAFADPSIKAIIPTIGGD--------------------------DSNELLPYLDYELIKKNPKI--FIGY 101 (308)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEECCccc--------------------------CHhhhhhhcCHHHHhhCCCE--EEec
Confidence 4567788899999999999999988762 11123355555555556654 6666
Q ss_pred cCchhHHHHHH--hCCcEEecccc
Q 042731 359 CGWNSVLEALS--HGVPIIGWPLA 380 (481)
Q Consensus 359 GG~gt~~eal~--~GvP~l~~P~~ 380 (481)
.-..++.-++. .|.+.+--|..
T Consensus 102 SDiTaL~~al~~~~g~~t~hGp~~ 125 (308)
T cd07062 102 SDITALHLAIYKKTGLVTYYGPNL 125 (308)
T ss_pred cHHHHHHHHHHHhcCCeEEECccc
Confidence 66666666553 25655555543
No 257
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.49 E-value=50 Score=30.86 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=37.2
Q ss_pred ccceeeccCchhHHHHHH-hCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCC
Q 042731 352 VSAFLSHCGWNSVLEALS-HGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 352 v~~~I~HGG~gt~~eal~-~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
++.+|+=||=||++.|+. .++|++.+-.. .+|.. .....+++.+.+.+++++.
T Consensus 42 ~d~vi~iGGDGT~L~a~~~~~~Pilgin~G--------------~lGfl------~~~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 42 ADLIIVVGGDGTVLKAAKKVGTPLVGFKAG--------------RLGFL------SSYTLEEIDRFLEDLKNWN 95 (256)
T ss_pred CCEEEEECCcHHHHHHHHHcCCCEEEEeCC--------------CCccc------cccCHHHHHHHHHHHHcCC
Confidence 455999999999999877 57888877211 12222 2345678888888888765
No 258
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=42.34 E-value=80 Score=27.46 Aligned_cols=120 Identities=15% Similarity=0.095 Sum_probs=60.8
Q ss_pred CChHHHHHHHHHH-HhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCC------CCCCCCCC----CCCC
Q 042731 4 GHIIPFLALARRL-EETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDL------PPCTENTD----SIPY 72 (481)
Q Consensus 4 GHv~P~l~LA~~L-~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~----~~~~ 72 (481)
+.+.=.+.+|+.| .+ .|.+|.+.-+. ....+++. -.+.++.++.. ..|-+ ........ ....
T Consensus 17 ~~~e~~v~~a~~~~~~-~g~dViIsRG~-ta~~lr~~----~~iPVV~I~~s-~~Dil~al~~a~~~~~~Iavv~~~~~~ 89 (176)
T PF06506_consen 17 ASLEEAVEEARQLLES-EGADVIISRGG-TAELLRKH----VSIPVVEIPIS-GFDILRALAKAKKYGPKIAVVGYPNII 89 (176)
T ss_dssp --HHHHHHHHHHHHTT-TT-SEEEEEHH-HHHHHHCC-----SS-EEEE----HHHHHHHHHHCCCCTSEEEEEEESS-S
T ss_pred ecHHHHHHHHHHhhHh-cCCeEEEECCH-HHHHHHHh----CCCCEEEECCC-HhHHHHHHHHHHhcCCcEEEEeccccc
Confidence 4456678899999 77 89999988764 33455542 23455555532 10100 00000000 0001
Q ss_pred CchHHHHHHH--------hhhhHHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEechhHH
Q 042731 73 HLFPKFLQAS--------ASLEPHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGGGGF 137 (481)
Q Consensus 73 ~~~~~~~~~~--------~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 137 (481)
.....+...+ -.....+...+++.... +.|+||.+.. ...+|+++|+|++.+.+..-+
T Consensus 90 ~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~----G~~viVGg~~---~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 90 PGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAE----GVDVIVGGGV---VCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp CCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHT----T--EEEESHH---HHHHHHHTTSEEEESS--HHH
T ss_pred HHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHc----CCcEEECCHH---HHHHHHHcCCcEEEEEecHHH
Confidence 1122222222 11244567777776555 7999999953 689999999999988774443
No 259
>PRK08506 replicative DNA helicase; Provisional
Probab=42.19 E-value=1.2e+02 Score=31.15 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=29.3
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhh
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLK 37 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~ 37 (481)
|+.|-..-.+.+|....+ .|+.|.|++.+-....+.
T Consensus 201 pg~GKT~fal~ia~~~~~-~g~~V~~fSlEMs~~ql~ 236 (472)
T PRK08506 201 PSMGKTTLCLNMALKALN-QDKGVAFFSLEMPAEQLM 236 (472)
T ss_pred CCCChHHHHHHHHHHHHh-cCCcEEEEeCcCCHHHHH
Confidence 678888999999999888 899999999875544433
No 260
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=42.14 E-value=41 Score=34.18 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEec
Q 042731 88 HFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIG 133 (481)
Q Consensus 88 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 133 (481)
.+.+++++. +||++|.+.. ...+|+++|+|++.+..
T Consensus 361 e~~~~i~~~-------~pdliig~~~---~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 361 EVGDMIART-------EPELIFGTQM---ERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHHhh-------CCCEEEecch---hhHHHHHcCCCEEEEeC
Confidence 455666666 8999999964 66678999999987653
No 261
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=42.01 E-value=1e+02 Score=25.17 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=26.9
Q ss_pred eEEEEEcccccccCHHHHHHHHHHHHh--cCCceEEEEc
Q 042731 267 SVLYVSFGSQNTIAASQMMQLAMALEA--SGKNFIWVVR 303 (481)
Q Consensus 267 ~~V~vs~Gs~~~~~~~~~~~~~~al~~--~~~~~i~~~~ 303 (481)
.+|+|+|||......+.+..+.+.++. .+..+-|...
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 589999999976445667778888765 3556777654
No 262
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=41.62 E-value=54 Score=30.09 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=21.3
Q ss_pred CccEEEeCCCCchHHHHHHHhCCceEEEech
Q 042731 104 KPLCIITDTFLGWCKETAQEYGIFHAIFIGG 134 (481)
Q Consensus 104 ~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~ 134 (481)
+-|++|+.- ....++|..+|+|++.++..
T Consensus 183 ~a~~~I~~D--tg~~HlA~a~~~p~v~lfg~ 211 (247)
T PF01075_consen 183 RADLVIGND--TGPMHLAAALGTPTVALFGP 211 (247)
T ss_dssp TSSEEEEES--SHHHHHHHHTT--EEEEESS
T ss_pred cCCEEEecC--ChHHHHHHHHhCCEEEEecC
Confidence 468998763 56789999999999998754
No 263
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=41.37 E-value=33 Score=35.72 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEec
Q 042731 88 HFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIG 133 (481)
Q Consensus 88 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 133 (481)
.+.+.+++. +||+||.+. ....+|+++|||++.+..
T Consensus 355 ei~~~i~~~-------~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 355 EVADAIAAL-------EPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHhc-------CCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 445566666 899999996 477889999999987543
No 264
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=41.34 E-value=85 Score=31.18 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=46.0
Q ss_pred ccceeeccCchhHHHHHHh-----------------CCcEEecccccchhhhHHHHHHHhcceEEeec-cCCcccCHHHH
Q 042731 352 VSAFLSHCGWNSVLEALSH-----------------GVPIIGWPLAAEQFYNSKLLEEEMGVCVEIAR-GMSCEVLKEDL 413 (481)
Q Consensus 352 v~~~I~HGG~gt~~eal~~-----------------GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~-~~~~~~~~~~l 413 (481)
..+++|.||..+.+.|+.+ +.|++.++-.. ++-+ ....+.||+|++.-+ +++.++..+.|
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~-~Kaa~~lGlg~~~I~~~~~~~md~~~L 181 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSI-EKAARILGLGVRKIPTDEDGRMDIEAL 181 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THH-HHHHHHTTSEEEEE-BBTTSSB-HHHH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHH-HHhcceeeeEEEEecCCcchhhhHHHh
Confidence 4589999998888777532 24677774433 2333 445557799976665 45577888899
Q ss_pred HHHHHHHhcC
Q 042731 414 SAKIELVMNE 423 (481)
Q Consensus 414 ~~~i~~vl~~ 423 (481)
.++|.+...+
T Consensus 182 ~~~l~~~~~~ 191 (373)
T PF00282_consen 182 EKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHT
T ss_pred hhhhcccccc
Confidence 9988877654
No 265
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=41.11 E-value=3.7e+02 Score=26.58 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhc--CCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHH---hhcccCccce
Q 042731 281 ASQMMQLAMALEAS--GKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVE---ILSHRSVSAF 355 (481)
Q Consensus 281 ~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~---ll~~~~v~~~ 355 (481)
.+...+++..+-.. ..+|++.-.++. ...-++..|+... ...+...+-+|+++ +|...++ |
T Consensus 210 iDll~~iIp~vc~~~p~vrfii~GDGPk-----------~i~lee~lEk~~l-~~rV~~lG~v~h~~Vr~vl~~G~I--F 275 (426)
T KOG1111|consen 210 IDLLLEIIPSVCDKHPEVRFIIIGDGPK-----------RIDLEEMLEKLFL-QDRVVMLGTVPHDRVRDVLVRGDI--F 275 (426)
T ss_pred hHHHHHHHHHHHhcCCCeeEEEecCCcc-----------cchHHHHHHHhhc-cCceEEecccchHHHHHHHhcCcE--E
Confidence 56666666655553 344444432221 1122445554442 45566668899864 6666665 6
Q ss_pred eeccC----chhHHHHHHhCCcEEec
Q 042731 356 LSHCG----WNSVLEALSHGVPIIGW 377 (481)
Q Consensus 356 I~HGG----~gt~~eal~~GvP~l~~ 377 (481)
++-.= .-++.||.++|.|++..
T Consensus 276 lntSlTEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 276 LNTSLTEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred eccHHHHHHHHHHHHHHhCCCEEEEe
Confidence 65432 23678999999999976
No 266
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=40.36 E-value=2.4e+02 Score=24.33 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=49.7
Q ss_pred ceEEEccchhhhhhHHHHHHhhcCCCeeeecccccCccccccccccCCCChhhhhhhhcCCCCCeEEEEEcccccccCHH
Q 042731 203 DGILVNTVEELDKIGLMYFKRKFGRPVWPIGPVLLSTESRAGARKEYGISTELCKKWLDTKPYTSVLYVSFGSQNTIAAS 282 (481)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~ 282 (481)
..+++.+-++.-......+...+ |.+..+|-.....+ ....+++.+.+....+ .+|+|++|+-. .|
T Consensus 50 ~ifllG~~~~~~~~~~~~l~~~y-P~l~ivg~~~g~f~---------~~~~~~i~~~I~~~~p-div~vglG~Pk---QE 115 (172)
T PF03808_consen 50 RIFLLGGSEEVLEKAAANLRRRY-PGLRIVGYHHGYFD---------EEEEEAIINRINASGP-DIVFVGLGAPK---QE 115 (172)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHC-CCeEEEEecCCCCC---------hhhHHHHHHHHHHcCC-CEEEEECCCCH---HH
Confidence 34556666666556666777776 56777774443220 1246677777776653 49999998863 22
Q ss_pred HHHHHHHHHHhcCCceEEEEcCC
Q 042731 283 QMMQLAMALEASGKNFIWVVRPP 305 (481)
Q Consensus 283 ~~~~~~~al~~~~~~~i~~~~~~ 305 (481)
.+ +.+.....+..+++.+|..
T Consensus 116 ~~--~~~~~~~l~~~v~i~vG~~ 136 (172)
T PF03808_consen 116 RW--IARHRQRLPAGVIIGVGGA 136 (172)
T ss_pred HH--HHHHHHHCCCCEEEEECch
Confidence 21 2222333455555566544
No 267
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=39.67 E-value=1.2e+02 Score=25.44 Aligned_cols=84 Identities=13% Similarity=0.037 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhCC--CCEEEEEeCCcchhhhhhcCCCCC-CeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHh
Q 042731 7 IPFLALARRLEETN--KYTITLVNTPLNLKKLKSSLPQNS-SIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQASA 83 (481)
Q Consensus 7 ~P~l~LA~~L~~~~--Gh~Vt~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 83 (481)
.-++.+++.|.+ . |+++ ++++...+.+++ . |+.+..+- . + +.
T Consensus 17 ~~l~~~a~~l~~-ll~Gf~l--~AT~gTa~~L~~-----~~Gi~v~~vi-~----~-~~--------------------- 61 (142)
T PRK05234 17 DDLVAWVKAHKD-LLEQHEL--YATGTTGGLIQE-----ATGLDVTRLL-S----G-PL--------------------- 61 (142)
T ss_pred HHHHHHHHHHHH-HhcCCEE--EEeChHHHHHHh-----ccCCeeEEEE-c----C-CC---------------------
Confidence 457899999999 8 9995 455566677777 4 56555441 1 0 00
Q ss_pred hhhHHHHHHHHHHhhccCCCCccEEEeCC--CCc--------hHHHHHHHhCCceEEEe
Q 042731 84 SLEPHFKKLISELVNEQNGQKPLCIITDT--FLG--------WCKETAQEYGIFHAIFI 132 (481)
Q Consensus 84 ~~~~~~~~ll~~~~~~~~~~~pD~vI~D~--~~~--------~~~~~A~~lgiP~v~~~ 132 (481)
.-.+.+.++++.- +.|+||..+ ... .-..+|-.+|||++...
T Consensus 62 gg~~~i~~~I~~g-------~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l 113 (142)
T PRK05234 62 GGDQQIGALIAEG-------KIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATNR 113 (142)
T ss_pred CCchhHHHHHHcC-------ceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcCH
Confidence 0112345566655 899999843 322 22366888999999743
No 268
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=39.63 E-value=1.7e+02 Score=29.50 Aligned_cols=35 Identities=23% Similarity=0.179 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEE
Q 042731 87 PHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIF 131 (481)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~ 131 (481)
..+.+.++.. +||++|.... ...+|+++|||++..
T Consensus 346 ~e~~~~i~~~-------~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 346 RELKKLLKEK-------KADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHHhhc-------CCCEEEECCc---chhhHHhcCCCEEEc
Confidence 3455677777 8999999954 568999999999853
No 269
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.41 E-value=49 Score=31.22 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=35.6
Q ss_pred ccceeeccCchhHHHHHH----hCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhc
Q 042731 352 VSAFLSHCGWNSVLEALS----HGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMN 422 (481)
Q Consensus 352 v~~~I~HGG~gt~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~ 422 (481)
++++|+=||=||++.+++ .++|++.+-.. .+|... ..+++++.+.+.++++
T Consensus 43 ~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~------~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 43 AQLAIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLT------DIDPKNAYEQLEACLE 97 (272)
T ss_pred CCEEEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCcccc------cCCHHHHHHHHHHHHh
Confidence 345999999999998865 36898888221 134322 3467778888888887
No 270
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=39.09 E-value=2.2e+02 Score=28.83 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=20.9
Q ss_pred ccceeeccCc------hhHHHHHHhCCcEEec
Q 042731 352 VSAFLSHCGW------NSVLEALSHGVPIIGW 377 (481)
Q Consensus 352 v~~~I~HGG~------gt~~eal~~GvP~l~~ 377 (481)
.+++++|.|- +.+++|...++|+|++
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 4457888774 4777999999999999
No 271
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=39.05 E-value=60 Score=31.78 Aligned_cols=88 Identities=14% Similarity=0.126 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhhhhH
Q 042731 8 PFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQASASLEP 87 (481)
Q Consensus 8 P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (481)
-+.+|++.|.+ .|++|.+.+++...+..++.. .. .+. .... ....+.. .....
T Consensus 201 ~~a~l~~~l~~-~~~~vvl~Gg~~e~~~~~~i~---~~-----~~~-----~~~~---~~~~l~g----------~~sL~ 253 (348)
T PRK10916 201 HYAELAQQLID-EGYQVVLFGSAKDHEAGNEIL---AA-----LNT-----EQQA---WCRNLAG----------ETQLE 253 (348)
T ss_pred HHHHHHHHHHH-CCCeEEEEeCHHhHHHHHHHH---Hh-----ccc-----cccc---ceeeccC----------CCCHH
Confidence 46789999988 899999988876655444311 00 000 0000 0000000 01122
Q ss_pred HHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEec
Q 042731 88 HFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIG 133 (481)
Q Consensus 88 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 133 (481)
.+..+++ +-|++|+.- ....++|..+|+|++.++.
T Consensus 254 el~ali~---------~a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 254 QAVILIA---------ACKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred HHHHHHH---------hCCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 2234443 458888773 4577899999999998765
No 272
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=38.90 E-value=2.4e+02 Score=23.93 Aligned_cols=141 Identities=20% Similarity=0.230 Sum_probs=76.9
Q ss_pred EEEEEcccccccCHHHHHHHHHHHHhcCCceEE-EEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHh
Q 042731 268 VLYVSFGSQNTIAASQMMQLAMALEASGKNFIW-VVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEI 346 (481)
Q Consensus 268 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~l 346 (481)
.|-|-+||.. +++..+..++.|.+.+..+-. +++-+. -|+.+.+..+ .
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSAHR-------------TPe~m~~ya~-------------~--- 52 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSAHR-------------TPEKMFEYAE-------------E--- 52 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEeccC-------------CHHHHHHHHH-------------H---
Confidence 4777888875 677788888889998887643 333332 2222222111 0
Q ss_pred hcccCccceeeccCch---hHHHHHHhCCcEEecccccchh---hhHHHHHHHhcceEEeec-cCCcccCHHHHHHHHHH
Q 042731 347 LSHRSVSAFLSHCGWN---SVLEALSHGVPIIGWPLAAEQF---YNSKLLEEEMGVCVEIAR-GMSCEVLKEDLSAKIEL 419 (481)
Q Consensus 347 l~~~~v~~~I~HGG~g---t~~eal~~GvP~l~~P~~~DQ~---~na~~v~~~lG~G~~~~~-~~~~~~~~~~l~~~i~~ 419 (481)
.....++.+|.-.|.- .=+-|-.--+|+|++|....-- .----+.+. --|+-+.. +=.+..++..++-.|..
T Consensus 53 a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViGVPv~s~~L~GlDSL~SiVQM-P~GvPVaTvaIg~a~NAallAa~ILa 131 (162)
T COG0041 53 AEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIVQM-PAGVPVATVAIGNAANAALLAAQILA 131 (162)
T ss_pred HHHCCCeEEEecCcchhhcchhhhhcCCCCeEeccCccccccchHHHHHHhcC-CCCCeeEEEeecchhhHHHHHHHHHc
Confidence 0112233355544421 1123444578999999863211 111122322 33432222 00134677777776644
Q ss_pred HhcCChhhHHHHHHHHHHHHHHHHHh
Q 042731 420 VMNETEKGTDLRNKANEVKVIIKNAV 445 (481)
Q Consensus 420 vl~~~~~~~~~~~~a~~~~~~~~~~~ 445 (481)
+ .|+ .++++..++++..++.+
T Consensus 132 ~-~d~----~l~~kl~~~r~~~~~~V 152 (162)
T COG0041 132 I-KDP----ELAEKLAEFREAQTEEV 152 (162)
T ss_pred C-CCH----HHHHHHHHHHHHHHHHH
Confidence 4 556 79999999999988765
No 273
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=38.73 E-value=65 Score=27.73 Aligned_cols=43 Identities=14% Similarity=0.070 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHHhhccCCCCccEEEeCCCCc---hHHHHHHHhCCceEEEec
Q 042731 84 SLEPHFKKLISELVNEQNGQKPLCIITDTFLG---WCKETAQEYGIFHAIFIG 133 (481)
Q Consensus 84 ~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~---~~~~~A~~lgiP~v~~~~ 133 (481)
...+.+.+++++. +||+|+...-.. .+..+|.++|.|++.-..
T Consensus 70 ~~a~al~~~i~~~-------~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 70 PYAPALVALAKKE-------KPSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred HHHHHHHHHHHhc-------CCCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 3455567777777 899999875432 678999999999997544
No 274
>PRK06321 replicative DNA helicase; Provisional
Probab=38.40 E-value=1.9e+02 Score=29.88 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=27.7
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhh
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKL 36 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i 36 (481)
|+.|-..-.+.+|..++.+.|..|.|++.+-....+
T Consensus 235 PgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 235 PAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred CCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 778888899999998863159999999987554433
No 275
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=38.33 E-value=3.8e+02 Score=25.99 Aligned_cols=95 Identities=14% Similarity=0.201 Sum_probs=57.6
Q ss_pred CeEEEEEcc-ccc---ccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecc-
Q 042731 266 TSVLYVSFG-SQN---TIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKW- 340 (481)
Q Consensus 266 ~~~V~vs~G-s~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~- 340 (481)
++.|.+.-| |.. ..+.+.+.++++.+...+.++++..+.. +.. .-+.+..... ..+.+.+-
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~-------e~e----~~~~i~~~~~---~~~~l~~k~ 240 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPD-------EEE----RAEEIAKGLP---NAVILAGKT 240 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChH-------HHH----HHHHHHHhcC---CccccCCCC
Confidence 567888888 442 3678999999999999996665555432 110 1112221111 11112222
Q ss_pred -cCH-HHhhcccCccceeeccCchhHHHHHHhCCcEEec
Q 042731 341 -APQ-VEILSHRSVSAFLSHCGWNSVLEALSHGVPIIGW 377 (481)
Q Consensus 341 -ip~-~~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~ 377 (481)
+.+ ..++.+++. +|+. -.|-+.=|.+.|+|+|++
T Consensus 241 sL~e~~~li~~a~l--~I~~-DSg~~HlAaA~~~P~I~i 276 (334)
T COG0859 241 SLEELAALIAGADL--VIGN-DSGPMHLAAALGTPTIAL 276 (334)
T ss_pred CHHHHHHHHhcCCE--EEcc-CChHHHHHHHcCCCEEEE
Confidence 233 457777774 6665 457888899999999987
No 276
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=38.30 E-value=2.1e+02 Score=23.05 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHHHhhccCCCCccEEEeCCC
Q 042731 83 ASLEPHFKKLISELVNEQNGQKPLCIITDTF 113 (481)
Q Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~ 113 (481)
..+.+.+.+++++. +||+|++-..
T Consensus 86 ~~~~~~l~~~i~~~-------~p~~V~t~~~ 109 (128)
T PF02585_consen 86 EELVRDLEDLIREF-------RPDVVFTPDP 109 (128)
T ss_dssp HHHHHHHHHHHHHH--------ESEEEEE-S
T ss_pred HHHHHHHHHHHHHc-------CCCEEEECCC
Confidence 45667788999999 9999997643
No 277
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=38.18 E-value=2e+02 Score=28.02 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=23.9
Q ss_pred CccEEEe-CCCC-chHHHHHHHhCCceEEEechh
Q 042731 104 KPLCIIT-DTFL-GWCKETAQEYGIFHAIFIGGG 135 (481)
Q Consensus 104 ~pD~vI~-D~~~-~~~~~~A~~lgiP~v~~~~~~ 135 (481)
.||+||. |+.. ..+..=|.++|||.|.+.-+.
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 5887764 4433 378899999999999987543
No 278
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=38.14 E-value=32 Score=27.87 Aligned_cols=23 Identities=9% Similarity=-0.089 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCcc
Q 042731 9 FLALARRLEETNKYTITLVNTPLN 32 (481)
Q Consensus 9 ~l~LA~~L~~~~Gh~Vt~~~~~~~ 32 (481)
.++|+.+-++ |||+|.++.....
T Consensus 20 T~alm~eAq~-RGhev~~~~~~dL 42 (119)
T PF02951_consen 20 TFALMLEAQR-RGHEVFYYEPGDL 42 (119)
T ss_dssp HHHHHHHHHH-TT-EEEEE-GGGE
T ss_pred HHHHHHHHHH-CCCEEEEEEcCcE
Confidence 5788899999 9999999997643
No 279
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=37.85 E-value=63 Score=20.98 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 042731 409 LKEDLSAKIELVMNETEKGTDLRNKANEVK 438 (481)
Q Consensus 409 ~~~~l~~~i~~vl~~~~~~~~~~~~a~~~~ 438 (481)
+++.|..||..+.++. .++++.|+++.
T Consensus 1 tee~l~~Ai~~v~~g~---~S~r~AA~~yg 27 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK---MSIRKAAKKYG 27 (45)
T ss_dssp -HHHHHHHHHHHHTTS---S-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCC---CCHHHHHHHHC
Confidence 5788999999998772 16887777654
No 280
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=37.83 E-value=90 Score=28.56 Aligned_cols=42 Identities=19% Similarity=0.122 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhccCCCCccEEEeCCCCc--hHHHHHHH----hCCceEEEechh
Q 042731 87 PHFKKLISELVNEQNGQKPLCIITDTFLG--WCKETAQE----YGIFHAIFIGGG 135 (481)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~--~~~~~A~~----lgiP~v~~~~~~ 135 (481)
....+.++++ +||++|+-.-.. ++...|++ .|||+|++.-.|
T Consensus 49 ~~~~~~~~~~-------~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p 96 (276)
T PF01993_consen 49 EVVTKMLKEW-------DPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAP 96 (276)
T ss_dssp HHHHHHHHHH---------SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGG
T ss_pred HHHHHHHHhh-------CCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCC
Confidence 3445677899 999888654333 55666655 499999988654
No 281
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=37.71 E-value=64 Score=33.17 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=39.3
Q ss_pred ccceeeccCchhHHHHHHh----CCcEEecccccchhhhHHHHHHHhc-ceEEeeccCCcccCHHHHHHHHHHHhcCC
Q 042731 352 VSAFLSHCGWNSVLEALSH----GVPIIGWPLAAEQFYNSKLLEEEMG-VCVEIARGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 352 v~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG-~G~~~~~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
++++|+=||=||++.|... ++|++++ | +| +|... .++.+++.++|.++++++
T Consensus 263 ~DlVIsiGGDGTlL~Aar~~~~~~iPILGI--------N-------~G~LGFLt------~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 263 VDLVITLGGDGTVLWAASMFKGPVPPVVPF--------S-------MGSLGFMT------PFHSEQYRDCLDAILKGP 319 (508)
T ss_pred CCEEEEECCcHHHHHHHHHhccCCCcEEEE--------e-------CCCcceec------ccCHHHHHHHHHHHHcCC
Confidence 4569999999999999774 5788877 1 23 44422 357889999999999876
No 282
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=37.60 E-value=1.8e+02 Score=30.76 Aligned_cols=27 Identities=11% Similarity=0.260 Sum_probs=21.2
Q ss_pred ccceeeccCc------hhHHHHHHhCCcEEecc
Q 042731 352 VSAFLSHCGW------NSVLEALSHGVPIIGWP 378 (481)
Q Consensus 352 v~~~I~HGG~------gt~~eal~~GvP~l~~P 378 (481)
.+++++|.|- +.+++|...++|+|++.
T Consensus 77 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 77 PAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3447777774 47889999999999985
No 283
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=36.95 E-value=2.1e+02 Score=23.09 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=22.1
Q ss_pred CeEEEEEcccccccCHHHHHHHHHHHHhc
Q 042731 266 TSVLYVSFGSQNTIAASQMMQLAMALEAS 294 (481)
Q Consensus 266 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~ 294 (481)
+.+|+++.||......+.+..+...++..
T Consensus 2 ~~lvlv~hGS~~~~~~~~~~~~~~~l~~~ 30 (126)
T PRK00923 2 LGLLLVGHGSRLPYNKEVVTKIAEKIKEK 30 (126)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHh
Confidence 45899999998644457788888888763
No 284
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=36.87 E-value=50 Score=28.80 Aligned_cols=29 Identities=17% Similarity=0.018 Sum_probs=20.5
Q ss_pred CccEEEeCCCCch--HHHHHHHhCCceEEEe
Q 042731 104 KPLCIITDTFLGW--CKETAQEYGIFHAIFI 132 (481)
Q Consensus 104 ~pD~vI~D~~~~~--~~~~A~~lgiP~v~~~ 132 (481)
+||+||....... ....-++.|||.+.+.
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 8999998654332 3344567899998764
No 285
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=36.64 E-value=1.8e+02 Score=26.42 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=28.2
Q ss_pred CCCCChHHHHHHHHHHHhCC-CCEEEEEeCCcchhhhh
Q 042731 1 MAQGHIIPFLALARRLEETN-KYTITLVNTPLNLKKLK 37 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~-Gh~Vt~~~~~~~~~~i~ 37 (481)
|+.|-..-.+.++..+.. . |+.|.|++.+...+.+.
T Consensus 22 ~G~GKT~~~~~~~~~~~~-~~g~~vly~s~E~~~~~~~ 58 (242)
T cd00984 22 PSMGKTAFALNIAENIAK-KQGKPVLFFSLEMSKEQLL 58 (242)
T ss_pred CCCCHHHHHHHHHHHHHH-hCCCceEEEeCCCCHHHHH
Confidence 567778888888888777 6 99999999887655443
No 286
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.26 E-value=54 Score=31.05 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=35.7
Q ss_pred ccceeeccCchhHHHHHH---hCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCC
Q 042731 352 VSAFLSHCGWNSVLEALS---HGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 352 v~~~I~HGG~gt~~eal~---~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
++.+|+-||=||+.+++. .++|+++++... +|.. ..+.++++.+++.+++++.
T Consensus 58 ~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~--------------lGFl------~~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 58 VDFIIAIGGDGTILRIEHKTKKDIPILGINMGT--------------LGFL------TEVEPEETFFALSRLLEGD 113 (277)
T ss_pred CCEEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC--------------CCcc------ccCCHHHHHHHHHHHHcCC
Confidence 446999999999999984 356888886421 1111 1234677777787777665
No 287
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=36.18 E-value=31 Score=28.51 Aligned_cols=32 Identities=22% Similarity=0.385 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhc
Q 042731 7 IPFLALARRLEETNKYTITLVNTPLNLKKLKSS 39 (481)
Q Consensus 7 ~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~ 39 (481)
.-.+=|+..|++ +||+|++++++.....++.+
T Consensus 14 p~alYl~~~Lk~-~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 14 PSALYLSYKLKK-KGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp HHHHHHHHHHHC-TTEEEEEEE-HHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCeEEEecCHHHHhHhhhc
Confidence 345667899999 99999999999888888763
No 288
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=35.92 E-value=98 Score=30.14 Aligned_cols=83 Identities=17% Similarity=0.158 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhhhhH
Q 042731 8 PFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQASASLEP 87 (481)
Q Consensus 8 P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (481)
-+..|++.|.+ +|.+|.+++++...+.+++... .+ +.. ..+.. .....
T Consensus 196 ~~~~l~~~l~~-~~~~Vvl~g~~~e~e~~~~i~~---~~-----~~~---~~l~~--------------------k~sL~ 243 (334)
T COG0859 196 HYAELAELLIA-KGYQVVLFGGPDEEERAEEIAK---GL-----PNA---VILAG--------------------KTSLE 243 (334)
T ss_pred HHHHHHHHHHH-CCCEEEEecChHHHHHHHHHHH---hc-----CCc---cccCC--------------------CCCHH
Confidence 46789999999 8999999998855555444210 00 000 00000 01222
Q ss_pred HHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEec
Q 042731 88 HFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIG 133 (481)
Q Consensus 88 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 133 (481)
.+..++. +-|++|+.- ....++|..+|.|+|.+..
T Consensus 244 e~~~li~---------~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg 278 (334)
T COG0859 244 ELAALIA---------GADLVIGND--SGPMHLAAALGTPTIALYG 278 (334)
T ss_pred HHHHHHh---------cCCEEEccC--ChHHHHHHHcCCCEEEEEC
Confidence 3334442 568888763 4577899999999999875
No 289
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=35.85 E-value=39 Score=34.22 Aligned_cols=26 Identities=31% Similarity=0.209 Sum_probs=22.4
Q ss_pred CccEEEeCCCCchHHHHHHHhCCceEEEe
Q 042731 104 KPLCIITDTFLGWCKETAQEYGIFHAIFI 132 (481)
Q Consensus 104 ~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (481)
+||++|+... +..+|+++|||++.+.
T Consensus 355 ~pDllig~s~---~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 355 EPDLAIGTTP---LVQFAKEHGIPALYFT 380 (422)
T ss_pred CCCEEEcCCc---chHHHHHcCCCEEEec
Confidence 9999999954 6778999999999855
No 290
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.79 E-value=69 Score=30.67 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=38.2
Q ss_pred ccceeeccCchhHHHHHH----hCCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCC
Q 042731 352 VSAFLSHCGWNSVLEALS----HGVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 352 v~~~I~HGG~gt~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
.+.+|+=||=||+++++. .++|++++... .+|.. ...+.+++.++|.+++++.
T Consensus 63 ~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lGFl------~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 63 CDLVIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLGFL------TDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred CCEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------ccccc------ccCCHHHHHHHHHHHHcCC
Confidence 345999999999999975 37788888431 12211 2456788999999998765
No 291
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=35.57 E-value=5e+02 Score=27.59 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=29.2
Q ss_pred eccCchhHHHHHHhC--CcE--EecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHh
Q 042731 357 SHCGWNSVLEALSHG--VPI--IGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVM 421 (481)
Q Consensus 357 ~HGG~gt~~eal~~G--vP~--l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl 421 (481)
.+||+|+....+... +|+ +.+|...-+......+.+. ..++++.|.++|++++
T Consensus 524 ~~GG~gs~v~~~l~~~~~~~~~~gi~d~f~~~g~~~~l~~~------------~Gl~~~~I~~~i~~~l 580 (581)
T PRK12315 524 LDGGFGEKIARYYGNSDMKVLNYGAKKEFNDRVPVEELYKR------------NHLTPEQIVEDILSVL 580 (581)
T ss_pred cCCCHHHHHHHHHHcCCCeEEEecCCCCCCCCCCHHHHHHH------------HCcCHHHHHHHHHHHh
Confidence 479998766554433 333 3444322222233333323 4578888888887765
No 292
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=35.41 E-value=66 Score=32.93 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=29.6
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhh
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLK 37 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~ 37 (481)
|+.|-..=++.++..+.+ .|+.|.|++.++..+.+.
T Consensus 103 pGsGKTTL~lq~a~~~a~-~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 103 PGIGKSTLLLQVACQLAK-NQMKVLYVSGEESLQQIK 138 (454)
T ss_pred CCCCHHHHHHHHHHHHHh-cCCcEEEEECcCCHHHHH
Confidence 677888888999999999 899999999986655443
No 293
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=35.30 E-value=1.1e+02 Score=32.46 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=21.3
Q ss_pred ccceeeccCc------hhHHHHHHhCCcEEecc
Q 042731 352 VSAFLSHCGW------NSVLEALSHGVPIIGWP 378 (481)
Q Consensus 352 v~~~I~HGG~------gt~~eal~~GvP~l~~P 378 (481)
.+++++|.|- +.+.+|...++|+|++.
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 3447878773 47889999999999984
No 294
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=34.85 E-value=4.2e+02 Score=25.47 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=24.1
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcch
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNL 33 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~ 33 (481)
|+.|-=.=.=+|.++|.+ +||+|-++.-+...
T Consensus 60 PGaGKSTli~~L~~~l~~-~G~rVaVlAVDPSS 91 (323)
T COG1703 60 PGAGKSTLIEALGRELRE-RGHRVAVLAVDPSS 91 (323)
T ss_pred CCCchHHHHHHHHHHHHH-CCcEEEEEEECCCC
Confidence 455555556689999999 99999999865443
No 295
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=34.71 E-value=2e+02 Score=27.48 Aligned_cols=103 Identities=21% Similarity=0.306 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhH
Q 042731 285 MQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSV 364 (481)
Q Consensus 285 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~ 364 (481)
..+++.++..+..+++..+.. ..+++.+....+ .+-+=+ ||+. .=...|.+..
T Consensus 159 ~~~~~~l~~~~~Dlivlagym------------~il~~~~l~~~~--~~iiNi-----------HpSl--LP~f~G~~~~ 211 (289)
T PRK13010 159 AQILDLIETSGAELVVLARYM------------QVLSDDLSRKLS--GRAINI-----------HHSF--LPGFKGARPY 211 (289)
T ss_pred HHHHHHHHHhCCCEEEEehhh------------hhCCHHHHhhcc--CCceee-----------Cccc--CCCCCCCCHH
Confidence 456777777777888887766 236666665443 222222 3443 3334688999
Q ss_pred HHHHHhCCcEEeccccc--chhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHh
Q 042731 365 LEALSHGVPIIGWPLAA--EQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVM 421 (481)
Q Consensus 365 ~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl 421 (481)
..|+.+|+...++-.+. +....+..+.+. -+.+.. .-|.+.|.+.+.++-
T Consensus 212 ~~ai~~G~k~tG~TvH~v~~~lD~GpII~Q~---~v~V~~----~dt~e~L~~r~~~~E 263 (289)
T PRK13010 212 HQAHARGVKLIGATAHFVTDDLDEGPIIEQD---VERVDH----SYSPEDLVAKGRDVE 263 (289)
T ss_pred HHHHHcCCCeEEEEEEEEcCCCCCCCceEEE---EEEcCC----CCCHHHHHHHHHHHH
Confidence 99999999998887653 333333333322 333333 457888888887763
No 296
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.61 E-value=65 Score=34.13 Aligned_cols=53 Identities=26% Similarity=0.320 Sum_probs=39.0
Q ss_pred ccceeeccCchhHHHHHHh----CCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCC
Q 042731 352 VSAFLSHCGWNSVLEALSH----GVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 352 v~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
++++|+-||=||++.+... ++|++++-+. .+|. . ...+.+++.+.+.+++++.
T Consensus 349 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G--------------~lGF---L---~~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 349 ISHIISIGGDGTVLRASKLVNGEEIPIICINMG--------------TVGF---L---TEFSKEEIFKAIDSIISGE 405 (569)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------CCCc---C---cccCHHHHHHHHHHHHcCC
Confidence 4569999999999999774 7899988221 1232 1 2456788889999988775
No 297
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=34.46 E-value=39 Score=31.53 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=31.1
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhh
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKS 38 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~ 38 (481)
||.|-..=..+||.+|.+ +|+.|+|++.+.....+..
T Consensus 114 ~G~GKThLa~Ai~~~l~~-~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 114 PGVGKTHLAIAIGNELLK-AGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCCcHHHHHHHHHHHHHH-cCCeEEEEEHHHHHHHHHH
Confidence 566667778899999998 9999999999987777765
No 298
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=34.45 E-value=85 Score=27.35 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHhhccCCCCccEEEeCCCCc---hHHHHHHHhCCceEEEe
Q 042731 85 LEPHFKKLISELVNEQNGQKPLCIITDTFLG---WCKETAQEYGIFHAIFI 132 (481)
Q Consensus 85 ~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~---~~~~~A~~lgiP~v~~~ 132 (481)
..+.+.+++++. +||+|++..... .+..+|.++|.|++.-.
T Consensus 79 ~a~~l~~~i~~~-------~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv 122 (181)
T cd01985 79 TAKALAALIKKE-------KPDLILAGATSIGKQLAPRVAALLGVPQISDV 122 (181)
T ss_pred HHHHHHHHHHHh-------CCCEEEECCcccccCHHHHHHHHhCCCcceeE
Confidence 445566777777 899999875443 67899999999999743
No 299
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=34.43 E-value=2e+02 Score=30.36 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=20.7
Q ss_pred cceeeccCc------hhHHHHHHhCCcEEecc
Q 042731 353 SAFLSHCGW------NSVLEALSHGVPIIGWP 378 (481)
Q Consensus 353 ~~~I~HGG~------gt~~eal~~GvP~l~~P 378 (481)
+++++|.|- +.+.+|...++|+|++-
T Consensus 70 gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 70 GVCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 347777774 46789999999999995
No 300
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=34.20 E-value=65 Score=29.41 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=27.4
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhh
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKK 35 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~ 35 (481)
|+.|...-...++....+ +|..|.|++.+...+.
T Consensus 34 ~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e~~~~~ 67 (234)
T PRK06067 34 HGTGKSVLSQQFVYGALK-QGKKVYVITTENTSKS 67 (234)
T ss_pred CCCChHHHHHHHHHHHHh-CCCEEEEEEcCCCHHH
Confidence 577888888888888778 7999999999765443
No 301
>PRK05595 replicative DNA helicase; Provisional
Probab=34.15 E-value=1.6e+02 Score=30.14 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=27.9
Q ss_pred CCCCChHHHHHHHHHHH-hCCCCEEEEEeCCcchhhhh
Q 042731 1 MAQGHIIPFLALARRLE-ETNKYTITLVNTPLNLKKLK 37 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~-~~~Gh~Vt~~~~~~~~~~i~ 37 (481)
|+.|-..-.+.+|..+. + .|+.|.|++.+-..+.+.
T Consensus 210 pg~GKT~~al~ia~~~a~~-~g~~vl~fSlEms~~~l~ 246 (444)
T PRK05595 210 PSMGKTTFALNIAEYAALR-EGKSVAIFSLEMSKEQLA 246 (444)
T ss_pred CCCChHHHHHHHHHHHHHH-cCCcEEEEecCCCHHHHH
Confidence 67888888999998765 5 699999999875544433
No 302
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=33.62 E-value=1.9e+02 Score=26.08 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCCCEEEEEeCCcc
Q 042731 10 LALARRLEETNKYTITLVNTPLN 32 (481)
Q Consensus 10 l~LA~~L~~~~Gh~Vt~~~~~~~ 32 (481)
-.||+.|.. .||+|++.+....
T Consensus 14 ~alA~~~a~-ag~eV~igs~r~~ 35 (211)
T COG2085 14 SALALRLAK-AGHEVIIGSSRGP 35 (211)
T ss_pred HHHHHHHHh-CCCeEEEecCCCh
Confidence 468999999 9999999976443
No 303
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=32.92 E-value=85 Score=27.79 Aligned_cols=30 Identities=13% Similarity=-0.126 Sum_probs=23.4
Q ss_pred CccEEEeCC--CCchHHHHHHHhCCceEEEec
Q 042731 104 KPLCIITDT--FLGWCKETAQEYGIFHAIFIG 133 (481)
Q Consensus 104 ~pD~vI~D~--~~~~~~~~A~~lgiP~v~~~~ 133 (481)
++|+|++-. -++.|..+|..+|+|++...-
T Consensus 50 ~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK 81 (189)
T PRK09219 50 GITKILTIEASGIAPAVMAALALGVPVVFAKK 81 (189)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 799999653 234788999999999997553
No 304
>PRK04328 hypothetical protein; Provisional
Probab=32.57 E-value=4e+02 Score=24.56 Aligned_cols=35 Identities=9% Similarity=-0.171 Sum_probs=26.2
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhh
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKL 36 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i 36 (481)
|+.|-..=.+.++.+-.+ +|+.+.|++++...+.+
T Consensus 32 pGsGKT~l~~~fl~~~~~-~ge~~lyis~ee~~~~i 66 (249)
T PRK04328 32 PGTGKSIFSQQFLWNGLQ-MGEPGVYVALEEHPVQV 66 (249)
T ss_pred CCCCHHHHHHHHHHHHHh-cCCcEEEEEeeCCHHHH
Confidence 567777777777766667 79999999987655443
No 305
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=32.52 E-value=1.6e+02 Score=31.37 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=21.5
Q ss_pred ccceeeccCc------hhHHHHHHhCCcEEecc
Q 042731 352 VSAFLSHCGW------NSVLEALSHGVPIIGWP 378 (481)
Q Consensus 352 v~~~I~HGG~------gt~~eal~~GvP~l~~P 378 (481)
.+++++|.|- +.+++|...++|+|++.
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3448888774 47789999999999995
No 306
>PRK11823 DNA repair protein RadA; Provisional
Probab=32.44 E-value=93 Score=31.78 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=29.5
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhh
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLK 37 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~ 37 (481)
|+.|-..=++.++..+.+ +|.+|.|+++++..+.+.
T Consensus 89 pG~GKTtL~lq~a~~~a~-~g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 89 PGIGKSTLLLQVAARLAA-AGGKVLYVSGEESASQIK 124 (446)
T ss_pred CCCCHHHHHHHHHHHHHh-cCCeEEEEEccccHHHHH
Confidence 577788888999999988 899999999987655543
No 307
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=32.38 E-value=96 Score=27.16 Aligned_cols=29 Identities=17% Similarity=-0.043 Sum_probs=23.2
Q ss_pred CccEEEeCC--CCchHHHHHHHhCCceEEEe
Q 042731 104 KPLCIITDT--FLGWCKETAQEYGIFHAIFI 132 (481)
Q Consensus 104 ~pD~vI~D~--~~~~~~~~A~~lgiP~v~~~ 132 (481)
++|.|++=. -++.|..+|.++|+|++...
T Consensus 53 ~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 53 GIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred CCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 799999653 33588999999999999744
No 308
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=32.07 E-value=51 Score=33.62 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEE
Q 042731 88 HFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIF 131 (481)
Q Consensus 88 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~ 131 (481)
.+.+.+++. +||++|.... +..+|+++|||++.+
T Consensus 378 e~~~~i~~~-------~pdllig~s~---~~~~A~~lgip~~~~ 411 (443)
T TIGR01862 378 EFEEILEKL-------KPDIIFSGIK---EKFVAQKLGVPYRQM 411 (443)
T ss_pred HHHHHHHhc-------CCCEEEEcCc---chhhhhhcCCCeEec
Confidence 344556666 8999998864 678999999999864
No 309
>PRK09165 replicative DNA helicase; Provisional
Probab=32.03 E-value=1.8e+02 Score=30.20 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=27.1
Q ss_pred CCCCChHHHHHHHHHHHhC--------------CCCEEEEEeCCcchhhhh
Q 042731 1 MAQGHIIPFLALARRLEET--------------NKYTITLVNTPLNLKKLK 37 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~--------------~Gh~Vt~~~~~~~~~~i~ 37 (481)
|+.|-..-.+.+|...+.+ .|..|.|++.+-..+.+.
T Consensus 226 pg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~ 276 (497)
T PRK09165 226 PSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLA 276 (497)
T ss_pred CCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHH
Confidence 6778888888888877651 278999999876654443
No 310
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=31.97 E-value=47 Score=34.07 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEE
Q 042731 88 HFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIF 131 (481)
Q Consensus 88 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~ 131 (481)
.+.+.+++. +||++|+... ...+|+++|||++.+
T Consensus 386 e~~~~i~~~-------~pDllig~~~---~~~~a~k~gip~~~~ 419 (457)
T TIGR01284 386 ELEEIIEKY-------KPDIILTGIR---EGELAKKLGVPYINI 419 (457)
T ss_pred HHHHHHHhc-------CCCEEEecCC---cchhhhhcCCCEEEc
Confidence 445667777 9999999864 578999999999875
No 311
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=31.92 E-value=1.5e+02 Score=31.17 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=21.5
Q ss_pred ccceeeccCch------hHHHHHHhCCcEEecc
Q 042731 352 VSAFLSHCGWN------SVLEALSHGVPIIGWP 378 (481)
Q Consensus 352 v~~~I~HGG~g------t~~eal~~GvP~l~~P 378 (481)
.+++++|.|-| .+++|...++|+|++-
T Consensus 72 ~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 72 PGICFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred CEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44588888744 7789999999999883
No 312
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=31.91 E-value=2.8e+02 Score=24.88 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=21.8
Q ss_pred CCCChHHHHHHHHHHHhCCCCEEEEEe
Q 042731 2 AQGHIIPFLALARRLEETNKYTITLVN 28 (481)
Q Consensus 2 ~~GHv~P~l~LA~~L~~~~Gh~Vt~~~ 28 (481)
..|-..=.+.|++.|++ +|++|.++=
T Consensus 10 ~~GKT~vs~~L~~~l~~-~g~~v~~~K 35 (222)
T PRK00090 10 DVGKTVVTAALAQALRE-AGYSVAGYK 35 (222)
T ss_pred CcCHHHHHHHHHHHHHH-cCCceEEEe
Confidence 45777788999999999 999998764
No 313
>PRK08266 hypothetical protein; Provisional
Probab=31.37 E-value=1.9e+02 Score=30.40 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=20.9
Q ss_pred cceeeccCc------hhHHHHHHhCCcEEecc
Q 042731 353 SAFLSHCGW------NSVLEALSHGVPIIGWP 378 (481)
Q Consensus 353 ~~~I~HGG~------gt~~eal~~GvP~l~~P 378 (481)
+++++|.|- +.+.+|...++|+|++-
T Consensus 70 ~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 101 (542)
T PRK08266 70 GVCSVVPGPGVLNAGAALLTAYGCNSPVLCLT 101 (542)
T ss_pred eEEEECCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 347788774 47889999999999884
No 314
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=31.36 E-value=2.2e+02 Score=27.12 Aligned_cols=102 Identities=22% Similarity=0.272 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCchhH
Q 042731 285 MQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGWNSV 364 (481)
Q Consensus 285 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~gt~ 364 (481)
..+++.++..+..+++..+.. ..+++.+.+..+ .+-+=+ ||+. .=.+.|.+.+
T Consensus 155 ~~~~~~l~~~~~Dlivlagy~------------~il~~~~l~~~~--~~iiNi-----------HpSL--LP~~rG~~~~ 207 (286)
T PRK13011 155 AQVLDVVEESGAELVVLARYM------------QVLSPELCRKLA--GRAINI-----------HHSF--LPGFKGAKPY 207 (286)
T ss_pred HHHHHHHHHhCcCEEEEeChh------------hhCCHHHHhhcc--CCeEEe-----------cccc--CCCCCCCcHH
Confidence 346666777777777777765 236777665543 222222 4443 4445788999
Q ss_pred HHHHHhCCcEEeccccc-c-hhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHH
Q 042731 365 LEALSHGVPIIGWPLAA-E-QFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELV 420 (481)
Q Consensus 365 ~eal~~GvP~l~~P~~~-D-Q~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~v 420 (481)
..|+.+|+...++-.+. | ...-+..+.+ ..+.+.. .-|.+.|.+++.++
T Consensus 208 ~~ai~~G~~~tG~TvH~v~~~~D~G~Ii~Q---~~v~I~~----~dt~~~L~~r~~~~ 258 (286)
T PRK13011 208 HQAYERGVKLIGATAHYVTDDLDEGPIIEQ---DVERVDH----AYSPEDLVAKGRDV 258 (286)
T ss_pred HHHHHCCCCeEEEEEEEEcCCCcCCCcEEE---EEEEcCC----CCCHHHHHHHHHHH
Confidence 99999999998887643 2 2222222332 2334443 45889999888775
No 315
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=31.36 E-value=50 Score=33.87 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=22.0
Q ss_pred CccEEEeCCCCc--hHHHHHHHhCCceEEEechh
Q 042731 104 KPLCIITDTFLG--WCKETAQEYGIFHAIFIGGG 135 (481)
Q Consensus 104 ~pD~vI~D~~~~--~~~~~A~~lgiP~v~~~~~~ 135 (481)
+||+|+..+.-. .|..+++++|||.+.+.++.
T Consensus 401 ~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsL 434 (550)
T PF00862_consen 401 KPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSL 434 (550)
T ss_dssp --SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-
T ss_pred CCcEEEeccCcchHHHHHHHhhcCCceehhhhcc
Confidence 899999886443 67789999999999877654
No 316
>PRK07773 replicative DNA helicase; Validated
Probab=30.74 E-value=2.1e+02 Score=32.29 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=28.3
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhh
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLK 37 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~ 37 (481)
|+.|-..-.+.+|...+.+.|..|.|++.+-....+.
T Consensus 226 Pg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~ 262 (886)
T PRK07773 226 PSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLV 262 (886)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHH
Confidence 7788888999999887751488999999876554443
No 317
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=30.52 E-value=51 Score=33.30 Aligned_cols=32 Identities=19% Similarity=0.165 Sum_probs=25.1
Q ss_pred HHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEE
Q 042731 90 KKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIF 131 (481)
Q Consensus 90 ~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~ 131 (481)
.+.+++. +||+||...+ ...+|+++|||++.+
T Consensus 351 ~~~~~~~-------~pdliig~s~---~~~~a~~lgip~~~~ 382 (415)
T cd01977 351 FEILEML-------KPDIILTGPR---VGELVKKLHVPYVNI 382 (415)
T ss_pred HHHHHhc-------CCCEEEecCc---cchhhhhcCCCEEec
Confidence 3445666 8999999865 447999999999875
No 318
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=30.21 E-value=2.1e+02 Score=28.38 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=14.9
Q ss_pred HHHHHHHhCCCCEEEEEeCC
Q 042731 11 ALARRLEETNKYTITLVNTP 30 (481)
Q Consensus 11 ~LA~~L~~~~Gh~Vt~~~~~ 30 (481)
.+|+.|++ +||+|+++...
T Consensus 113 slA~~l~~-~G~~V~~~d~~ 131 (374)
T PRK11199 113 LFAKMLTL-SGYQVRILEQD 131 (374)
T ss_pred HHHHHHHH-CCCeEEEeCCC
Confidence 46788888 89998888753
No 319
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=30.18 E-value=76 Score=29.77 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=24.5
Q ss_pred eEEEEEcccccccC-HHHHHHHHHHHHh--cCCceEEEEcCC
Q 042731 267 SVLYVSFGSQNTIA-ASQMMQLAMALEA--SGKNFIWVVRPP 305 (481)
Q Consensus 267 ~~V~vs~Gs~~~~~-~~~~~~~~~al~~--~~~~~i~~~~~~ 305 (481)
.+|+|||||..... ..-+..+.+.++. .++.+.|+..+.
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 47899999987543 3367777777777 588888887655
No 320
>PRK06849 hypothetical protein; Provisional
Probab=30.15 E-value=1.8e+02 Score=28.90 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCCcc
Q 042731 7 IPFLALARRLEETNKYTITLVNTPLN 32 (481)
Q Consensus 7 ~P~l~LA~~L~~~~Gh~Vt~~~~~~~ 32 (481)
.-.+.+|+.|.+ .||+|+++.....
T Consensus 15 ~~~l~iar~l~~-~G~~Vi~~d~~~~ 39 (389)
T PRK06849 15 PAALELARLFHN-AGHTVILADSLKY 39 (389)
T ss_pred HHHHHHHHHHHH-CCCEEEEEeCCch
Confidence 357899999999 9999999987643
No 321
>PRK11269 glyoxylate carboligase; Provisional
Probab=30.05 E-value=1.4e+02 Score=31.67 Aligned_cols=27 Identities=15% Similarity=0.366 Sum_probs=21.1
Q ss_pred ccceeeccC------chhHHHHHHhCCcEEecc
Q 042731 352 VSAFLSHCG------WNSVLEALSHGVPIIGWP 378 (481)
Q Consensus 352 v~~~I~HGG------~gt~~eal~~GvP~l~~P 378 (481)
++++++|.| .+.+++|...++|+|++.
T Consensus 69 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 69 IGVCIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred cEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 334666666 678899999999999984
No 322
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=29.98 E-value=2.2e+02 Score=27.85 Aligned_cols=28 Identities=11% Similarity=-0.059 Sum_probs=22.4
Q ss_pred CccEEEeCCCCchHHHHHHHhCCceEEEec
Q 042731 104 KPLCIITDTFLGWCKETAQEYGIFHAIFIG 133 (481)
Q Consensus 104 ~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 133 (481)
+-|++|+.- ....++|..+|+|+|.++.
T Consensus 262 ~a~l~v~nD--SGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 262 HAQLFIGVD--SAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred hCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 358999873 5577899999999998774
No 323
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=29.95 E-value=2.8e+02 Score=26.87 Aligned_cols=28 Identities=14% Similarity=-0.013 Sum_probs=22.7
Q ss_pred CccEEEeCCCCchHHHHHHHhCCceEEEec
Q 042731 104 KPLCIITDTFLGWCKETAQEYGIFHAIFIG 133 (481)
Q Consensus 104 ~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 133 (481)
+-|++|+. -....++|..+|+|+|.++.
T Consensus 260 ~a~l~Vs~--DSGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 260 HARLFIGV--DSVPMHMAAALGTPLVALFG 287 (344)
T ss_pred hCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 35899987 35678999999999998764
No 324
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=29.91 E-value=1.8e+02 Score=30.17 Aligned_cols=37 Identities=24% Similarity=0.222 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEec
Q 042731 8 PFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIP 52 (481)
Q Consensus 8 P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~ 52 (481)
-++.||+.|.+ .|+++. ++....+.+++ .|+.+..+.
T Consensus 16 ~iv~lAk~L~~-lGfeI~--AT~GTak~L~e-----~GI~v~~V~ 52 (513)
T PRK00881 16 GIVEFAKALVE-LGVEIL--STGGTAKLLAE-----AGIPVTEVS 52 (513)
T ss_pred cHHHHHHHHHH-CCCEEE--EcchHHHHHHH-----CCCeeEEee
Confidence 36789999999 999984 55667788888 666666555
No 325
>PRK05858 hypothetical protein; Provisional
Probab=29.72 E-value=1.8e+02 Score=30.49 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=20.2
Q ss_pred ceeeccCc------hhHHHHHHhCCcEEecc
Q 042731 354 AFLSHCGW------NSVLEALSHGVPIIGWP 378 (481)
Q Consensus 354 ~~I~HGG~------gt~~eal~~GvP~l~~P 378 (481)
++++|.|- +.+++|-..++|+|++.
T Consensus 70 v~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 70 VAVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred EEEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 36777763 47889999999999985
No 326
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=29.60 E-value=1.8e+02 Score=30.03 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEec
Q 042731 8 PFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIP 52 (481)
Q Consensus 8 P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~ 52 (481)
-++.||+.|.+ .|+++. ++....+.+++ .|+.+..+.
T Consensus 12 ~iv~lAk~L~~-lGfeIi--ATgGTak~L~e-----~GI~v~~Vs 48 (511)
T TIGR00355 12 GIVEFAQGLVE-RGVELL--STGGTAKLLAE-----AGVPVTEVS 48 (511)
T ss_pred cHHHHHHHHHH-CCCEEE--EechHHHHHHH-----CCCeEEEee
Confidence 36789999999 999984 55667788888 667666655
No 327
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=29.45 E-value=63 Score=25.98 Aligned_cols=32 Identities=0% Similarity=-0.067 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhh
Q 042731 6 IIPFLALARRLEETNKYTITLVNTPLNLKKLKS 38 (481)
Q Consensus 6 v~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~ 38 (481)
+.|++.|.-...- +||+++++-+..+.+.+..
T Consensus 9 Vk~L~eIll~Fil-rGHKT~vyLP~yY~~~~~~ 40 (122)
T PF14626_consen 9 VKALVEILLHFIL-RGHKTVVYLPKYYKNYVDD 40 (122)
T ss_pred HHHHHHHHHHHHh-ccCeeEEEChHHHhccccc
Confidence 5688888888888 9999999999888776654
No 328
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=29.15 E-value=2.5e+02 Score=26.26 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCCcchhhhhh
Q 042731 7 IPFLALARRLEETNKYTITLVNTPLNLKKLKS 38 (481)
Q Consensus 7 ~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~ 38 (481)
.-+..|++.|.+ +|++|.+++++...+.++.
T Consensus 140 ~~~~~l~~~l~~-~~~~ivl~g~~~e~~~~~~ 170 (279)
T cd03789 140 ERFAALADRLLA-RGARVVLTGGPAERELAEE 170 (279)
T ss_pred HHHHHHHHHHHH-CCCEEEEEechhhHHHHHH
Confidence 357889999999 8999999988765555443
No 329
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.03 E-value=2.3e+02 Score=29.91 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=21.7
Q ss_pred ccceeeccCc------hhHHHHHHhCCcEEecc
Q 042731 352 VSAFLSHCGW------NSVLEALSHGVPIIGWP 378 (481)
Q Consensus 352 v~~~I~HGG~------gt~~eal~~GvP~l~~P 378 (481)
++++++|.|- +.+++|...++|+|++-
T Consensus 67 ~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 67 VGVAIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 4458888774 47889999999999984
No 330
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=28.90 E-value=1.1e+02 Score=27.40 Aligned_cols=39 Identities=13% Similarity=-0.052 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHhhccCCCCccEEEeCCCC------chHHHHHHHhCCceEE
Q 042731 85 LEPHFKKLISELVNEQNGQKPLCIITDTFL------GWCKETAQEYGIFHAI 130 (481)
Q Consensus 85 ~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~------~~~~~~A~~lgiP~v~ 130 (481)
..+.+.+++++. +||+|+.-.-+ -.+..+|.++|.|++.
T Consensus 96 ~a~al~~~i~~~-------~p~lVL~~~t~~~~~grdlaprlAarLga~lvs 140 (202)
T cd01714 96 TAKALAAAIKKI-------GVDLILTGKQSIDGDTGQVGPLLAELLGWPQIT 140 (202)
T ss_pred HHHHHHHHHHHh-------CCCEEEEcCCcccCCcCcHHHHHHHHhCCCccc
Confidence 445556777777 89999977544 4788999999999886
No 331
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=28.53 E-value=59 Score=31.19 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=29.5
Q ss_pred hhcccCccceeeccCchhHHHHHH----hCCcEEecccccc
Q 042731 346 ILSHRSVSAFLSHCGWNSVLEALS----HGVPIIGWPLAAE 382 (481)
Q Consensus 346 ll~~~~v~~~I~HGG~gt~~eal~----~GvP~l~~P~~~D 382 (481)
-|..-+++++|.=||.+|+.-|.. .++|++++|-.-|
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTID 126 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTID 126 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccccc
Confidence 345557888999999999877653 7999999998654
No 332
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=28.22 E-value=68 Score=32.94 Aligned_cols=24 Identities=25% Similarity=0.130 Sum_probs=20.6
Q ss_pred CccEEEeCCCCchHHHHHHHhCCceEE
Q 042731 104 KPLCIITDTFLGWCKETAQEYGIFHAI 130 (481)
Q Consensus 104 ~pD~vI~D~~~~~~~~~A~~lgiP~v~ 130 (481)
+||++|.... ...+|+++|||++-
T Consensus 397 ~pDliig~s~---~~~~A~klgiP~vd 420 (461)
T TIGR01860 397 KPDVIFTGPR---VGELVKKLHIPYVN 420 (461)
T ss_pred CCCEEEeCCc---chhhHhhcCCCEEe
Confidence 8999999864 57799999999983
No 333
>PLN02293 adenine phosphoribosyltransferase
Probab=28.05 E-value=1.7e+02 Score=25.91 Aligned_cols=29 Identities=7% Similarity=-0.189 Sum_probs=22.0
Q ss_pred CccEEEeCC--CCchHHHHHHHhCCceEEEe
Q 042731 104 KPLCIITDT--FLGWCKETAQEYGIFHAIFI 132 (481)
Q Consensus 104 ~pD~vI~D~--~~~~~~~~A~~lgiP~v~~~ 132 (481)
++|+|++=. -.++|..+|..+|+|++...
T Consensus 62 ~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~r 92 (187)
T PLN02293 62 GISVVAGIEARGFIFGPPIALAIGAKFVPLR 92 (187)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHCCCEEEEE
Confidence 789998653 23478899999999988633
No 334
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=27.99 E-value=54 Score=28.87 Aligned_cols=19 Identities=5% Similarity=0.044 Sum_probs=16.4
Q ss_pred HHHHHHHhCCCCEEEEEeCC
Q 042731 11 ALARRLEETNKYTITLVNTP 30 (481)
Q Consensus 11 ~LA~~L~~~~Gh~Vt~~~~~ 30 (481)
.|+++... |||+||-++-.
T Consensus 15 ~i~~EA~~-RGHeVTAivRn 33 (211)
T COG2910 15 RILKEALK-RGHEVTAIVRN 33 (211)
T ss_pred HHHHHHHh-CCCeeEEEEeC
Confidence 57888899 99999999954
No 335
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=27.95 E-value=1.3e+02 Score=31.74 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=20.7
Q ss_pred cceeeccCc------hhHHHHHHhCCcEEecc
Q 042731 353 SAFLSHCGW------NSVLEALSHGVPIIGWP 378 (481)
Q Consensus 353 ~~~I~HGG~------gt~~eal~~GvP~l~~P 378 (481)
.++++|.|- +.+.+|...++|+|++-
T Consensus 72 ~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 103 (561)
T PRK06048 72 GVCVATSGPGATNLVTGIATAYMDSVPIVALT 103 (561)
T ss_pred eEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 347788774 47789999999999984
No 336
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=27.87 E-value=1.5e+02 Score=31.17 Aligned_cols=126 Identities=14% Similarity=0.086 Sum_probs=0.0
Q ss_pred hhhhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCC
Q 042731 254 ELCKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQ 333 (481)
Q Consensus 254 ~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 333 (481)
+.+.+.|...+=+ .||-.-|+.. ..+++++...+.+++.+....
T Consensus 5 ~~l~~~L~~~Gv~-~vFg~pG~~~-------~~l~~al~~~~i~~v~~~hE~---------------------------- 48 (548)
T PRK08978 5 QWVVHALRAQGVD-TVFGYPGGAI-------MPVYDALYDGGVEHLLCRHEQ---------------------------- 48 (548)
T ss_pred HHHHHHHHHcCCC-EEEeCCCcch-------HHHHHHHHhcCCeEEEeccHH----------------------------
Q ss_pred cEEEecccCHHHhhcccCccceeeccC------chhHHHHHHhCCcEEec-------------ccccchhhhHHHHHHHh
Q 042731 334 GLVVHKWAPQVEILSHRSVSAFLSHCG------WNSVLEALSHGVPIIGW-------------PLAAEQFYNSKLLEEEM 394 (481)
Q Consensus 334 ~~~v~~~ip~~~ll~~~~v~~~I~HGG------~gt~~eal~~GvP~l~~-------------P~~~DQ~~na~~v~~~l 394 (481)
...+.-...-......+++++|.| .+.+++|...++|+|++ -+..||....+-+.
T Consensus 49 ---~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~t--- 122 (548)
T PRK08978 49 ---GAAMAAIGYARATGKVGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSPLIGTDAFQEIDVLGLSLACT--- 122 (548)
T ss_pred ---HHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhccccCce---
Q ss_pred cceEEeeccCCcccCHHHHHHHHHHHhcCC
Q 042731 395 GVCVEIARGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 395 G~G~~~~~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
+....+.. ..--.+.|.++++..++.+
T Consensus 123 k~~~~v~~---~~~~~~~i~~A~~~A~~~~ 149 (548)
T PRK08978 123 KHSFLVQS---LEELPEIMAEAFEIASSGR 149 (548)
T ss_pred eeEEEECC---HHHHHHHHHHHHHHHhcCC
No 337
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=27.81 E-value=4.8e+02 Score=24.22 Aligned_cols=100 Identities=18% Similarity=0.133 Sum_probs=53.5
Q ss_pred HHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhhhhHHHH
Q 042731 11 ALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQASASLEPHFK 90 (481)
Q Consensus 11 ~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (481)
..++.|.+ . -+|.+.++.+.......... ...+-+.-+|.+....+++.. ....+.. ....+.-.
T Consensus 119 ~a~~~l~~-~-~~vllttGsk~l~~f~~~~~-~~r~~~RvLP~~~s~~g~~~~--~iiam~g----------Pfs~e~n~ 183 (248)
T PRK08057 119 EAAEALAP-F-RRVLLTTGRQPLAHFAAILP-EHRLLVRVLPPPEVLLGLPRA--EIIALRG----------PFSLELER 183 (248)
T ss_pred HHHHHhhc-c-CCEEEecCcchHHHHhhcCC-CCEEEEEECCCchhcCCCChh--hEEEeeC----------CCCHHHHH
Confidence 45666666 4 46777777666555543211 034445556643111111110 0000000 01123336
Q ss_pred HHHHHHhhccCCCCccEEEeCCCCc----hHHHHHHHhCCceEEEe
Q 042731 91 KLISELVNEQNGQKPLCIITDTFLG----WCKETAQEYGIFHAIFI 132 (481)
Q Consensus 91 ~ll~~~~~~~~~~~pD~vI~D~~~~----~~~~~A~~lgiP~v~~~ 132 (481)
++++++ +.|+||+-..-. .=..+|+++|||++++.
T Consensus 184 aL~~~~-------~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 222 (248)
T PRK08057 184 ALLRQH-------RIDVVVTKNSGGAGTEAKLEAARELGIPVVMIA 222 (248)
T ss_pred HHHHHc-------CCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 788999 999999863221 22488999999999865
No 338
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=27.80 E-value=3.4e+02 Score=28.62 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=21.7
Q ss_pred ccceeeccCc------hhHHHHHHhCCcEEecc
Q 042731 352 VSAFLSHCGW------NSVLEALSHGVPIIGWP 378 (481)
Q Consensus 352 v~~~I~HGG~------gt~~eal~~GvP~l~~P 378 (481)
.+++++|.|- +.+++|...++|+|++-
T Consensus 65 ~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 65 VGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 4458888774 47889999999999994
No 339
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=27.65 E-value=1.5e+02 Score=26.68 Aligned_cols=37 Identities=8% Similarity=-0.010 Sum_probs=28.7
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhh
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKS 38 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~ 38 (481)
|+.|-..-.+.++....+ +|+.|.|++.+...+.+.+
T Consensus 25 ~G~GKt~~~~~~~~~~~~-~g~~~~y~s~e~~~~~l~~ 61 (224)
T TIGR03880 25 YGTGKTTFSLQFLYQGLK-NGEKAMYISLEEREERILG 61 (224)
T ss_pred CCCCHHHHHHHHHHHHHh-CCCeEEEEECCCCHHHHHH
Confidence 566777777888887777 7999999999876655543
No 340
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=27.62 E-value=1.2e+02 Score=31.57 Aligned_cols=36 Identities=11% Similarity=-0.030 Sum_probs=28.4
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhh
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLK 37 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~ 37 (481)
|+.|-..=.+.++..... .|..|.|++.+...+.+.
T Consensus 282 ~G~GKT~l~~~~~~~~~~-~g~~~~yis~e~~~~~i~ 317 (509)
T PRK09302 282 TGTGKTLLASKFAEAACR-RGERCLLFAFEESRAQLI 317 (509)
T ss_pred CCCCHHHHHHHHHHHHHh-CCCcEEEEEecCCHHHHH
Confidence 567777888888888888 899999999876655443
No 341
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=27.62 E-value=3.1e+02 Score=26.60 Aligned_cols=29 Identities=28% Similarity=0.201 Sum_probs=22.1
Q ss_pred CCChHHHHHHHHHHHhCCCCEEEEEeCCcc
Q 042731 3 QGHIIPFLALARRLEETNKYTITLVNTPLN 32 (481)
Q Consensus 3 ~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~ 32 (481)
-|-..=..++|-.|++ .|.+|.+++++..
T Consensus 13 VGKTT~aaA~A~~lA~-~g~kvLlvStDPA 41 (322)
T COG0003 13 VGKTTIAAATAVKLAE-SGKKVLLVSTDPA 41 (322)
T ss_pred ccHHHHHHHHHHHHHH-cCCcEEEEEeCCC
Confidence 3445556788999999 8998888887644
No 342
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=27.52 E-value=4.1e+02 Score=22.99 Aligned_cols=102 Identities=22% Similarity=0.268 Sum_probs=65.2
Q ss_pred CeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchh-HHHHhccCCCcEEEecccCHH
Q 042731 266 TSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRG-FEERIKCSGQGLVVHKWAPQV 344 (481)
Q Consensus 266 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~v~~~ip~~ 344 (481)
+.+-.+.+|.++ ..++..++..|.+++..-.... +.. +. ..+ ..+.+..
T Consensus 37 ~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~--------------~~~~~~------~~~---~~~~~l~ 86 (178)
T PF02826_consen 37 KTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPK--------------PEEGAD------EFG---VEYVSLD 86 (178)
T ss_dssp SEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCH--------------HHHHHH------HTT---EEESSHH
T ss_pred CEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCC--------------hhhhcc------ccc---ceeeehh
Confidence 668888999987 6788888889998887766541 011 11 111 2567888
Q ss_pred HhhcccCccceeeccCchhHHHHHHhCCcEEeccccc--chhhhHHHHHHHhcce-EEeeccCCcccCHHHHHHHHH
Q 042731 345 EILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAA--EQFYNSKLLEEEMGVC-VEIARGMSCEVLKEDLSAKIE 418 (481)
Q Consensus 345 ~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~G-~~~~~~~~~~~~~~~l~~~i~ 418 (481)
++|+.+++ ++.|. |... .+..|+..+... +=| +.+..++...+..+.|.++++
T Consensus 87 ell~~aDi--v~~~~------------------plt~~T~~li~~~~l~~m-k~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 87 ELLAQADI--VSLHL------------------PLTPETRGLINAEFLAKM-KPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp HHHHH-SE--EEE-S------------------SSSTTTTTSBSHHHHHTS-TTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred hhcchhhh--hhhhh------------------ccccccceeeeeeeeecc-ccceEEEeccchhhhhhhHHHHHHh
Confidence 99999886 66554 4433 567788888844 644 555556667778877777764
No 343
>PRK08617 acetolactate synthase; Reviewed
Probab=27.42 E-value=1.9e+02 Score=30.48 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=20.4
Q ss_pred cceeeccCc------hhHHHHHHhCCcEEecc
Q 042731 353 SAFLSHCGW------NSVLEALSHGVPIIGWP 378 (481)
Q Consensus 353 ~~~I~HGG~------gt~~eal~~GvP~l~~P 378 (481)
+++++|.|- +.+++|-..++|+|++-
T Consensus 69 gv~~vt~GpG~~N~l~gl~~A~~~~~Pvlvis 100 (552)
T PRK08617 69 GVVLVTSGPGVSNLATGLVTATAEGDPVVAIG 100 (552)
T ss_pred EEEEECCCCcHhHhHHHHHHHhhcCCCEEEEe
Confidence 347777663 47889999999999985
No 344
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=27.25 E-value=4.8e+02 Score=25.71 Aligned_cols=41 Identities=15% Similarity=-0.105 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhccCCCCccEEEeCCCCc---hHHHHHHHhCCceEEEechh
Q 042731 88 HFKKLISELVNEQNGQKPLCIITDTFLG---WCKETAQEYGIFHAIFIGGG 135 (481)
Q Consensus 88 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~---~~~~~A~~lgiP~v~~~~~~ 135 (481)
...+.+++. ++|+||.=.--. .+..+|..+++|++.+-+++
T Consensus 75 ~~~~~~~~~-------~~d~IIavGGGsv~D~aK~iA~~~~~p~i~IPTta 118 (366)
T PRK09423 75 RLVAIAEEN-------GCDVVIGIGGGKTLDTAKAVADYLGVPVVIVPTIA 118 (366)
T ss_pred HHHHHHHhc-------CCCEEEEecChHHHHHHHHHHHHcCCCEEEeCCcc
Confidence 334555666 899999653222 55566667799999877754
No 345
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=27.04 E-value=4.7e+02 Score=24.60 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhccCCCCccEEEeCCCCc--hHHHHHHHhCCceEEEec
Q 042731 87 PHFKKLISELVNEQNGQKPLCIITDTFLG--WCKETAQEYGIFHAIFIG 133 (481)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~--~~~~~A~~lgiP~v~~~~ 133 (481)
..+.+.+++. +..+|+++.... .+-.+|+..|++.+.+.+
T Consensus 210 ~~l~~~ik~~-------~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~ 251 (282)
T cd01017 210 AELVEFVKKS-------DVKYIFFEENASSKIAETLAKETGAKLLVLNP 251 (282)
T ss_pred HHHHHHHHHc-------CCCEEEEeCCCChHHHHHHHHHcCCcEEEecc
Confidence 3445556666 899999998765 556899999999876543
No 346
>PRK07524 hypothetical protein; Provisional
Probab=26.99 E-value=2.6e+02 Score=29.25 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=20.0
Q ss_pred ceeeccCch------hHHHHHHhCCcEEecc
Q 042731 354 AFLSHCGWN------SVLEALSHGVPIIGWP 378 (481)
Q Consensus 354 ~~I~HGG~g------t~~eal~~GvP~l~~P 378 (481)
+++.|.|-| .+++|...++|+|++-
T Consensus 67 v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~ 97 (535)
T PRK07524 67 VCFIITGPGMTNIATAMGQAYADSIPMLVIS 97 (535)
T ss_pred EEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 477777744 7789999999999883
No 347
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=26.86 E-value=1.2e+02 Score=27.16 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhccCCCCccEEEeCCCCc--hHHHHHHHh----CCceEEEechh
Q 042731 88 HFKKLISELVNEQNGQKPLCIITDTFLG--WCKETAQEY----GIFHAIFIGGG 135 (481)
Q Consensus 88 ~~~~ll~~~~~~~~~~~pD~vI~D~~~~--~~~~~A~~l----giP~v~~~~~~ 135 (481)
...+.++++ +||.||+-.-.+ ++...|++. ++|++++.-.|
T Consensus 51 av~~~~e~~-------~pDfvi~isPNpaaPGP~kARE~l~~s~~PaiiigDaP 97 (277)
T COG1927 51 AVTEMLEEF-------NPDFVIYISPNPAAPGPKKAREILSDSDVPAIIIGDAP 97 (277)
T ss_pred HHHHHHHhc-------CCCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEecCCc
Confidence 445788999 999999875544 455666653 89999977644
No 348
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=26.65 E-value=47 Score=33.23 Aligned_cols=27 Identities=33% Similarity=0.550 Sum_probs=21.7
Q ss_pred CCChHHHH---HHHHHHHhCCCCEEEEEeCC
Q 042731 3 QGHIIPFL---ALARRLEETNKYTITLVNTP 30 (481)
Q Consensus 3 ~GHv~P~l---~LA~~L~~~~Gh~Vt~~~~~ 30 (481)
.||+.|++ .+|+.++. +||+|.|+++.
T Consensus 16 lGH~~~~l~ADv~aR~~r~-~G~~v~~~tGt 45 (391)
T PF09334_consen 16 LGHLYPYLAADVLARYLRL-RGHDVLFVTGT 45 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT-EEEEEEEE
T ss_pred CChhHHHHHHHHHHHHHhh-cccceeeEEec
Confidence 48999887 46888989 99999999963
No 349
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=26.63 E-value=89 Score=28.25 Aligned_cols=38 Identities=32% Similarity=0.289 Sum_probs=27.1
Q ss_pred HHHHHHhhccCCCCccEEEeCCCC--chHHHHHHHhCCceEEEechh
Q 042731 91 KLISELVNEQNGQKPLCIITDTFL--GWCKETAQEYGIFHAIFIGGG 135 (481)
Q Consensus 91 ~ll~~~~~~~~~~~pD~vI~D~~~--~~~~~~A~~lgiP~v~~~~~~ 135 (481)
+.+..+ +||+||..... .....-....+||++.+....
T Consensus 54 E~i~~l-------~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 54 EAILAL-------KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHHHT---------SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHHHhC-------CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 556677 89999988776 355566667899999987644
No 350
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=26.62 E-value=3.4e+02 Score=24.04 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=24.0
Q ss_pred CCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhh
Q 042731 2 AQGHIIPFLALARRLEETNKYTITLVNTPLNLKK 35 (481)
Q Consensus 2 ~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~ 35 (481)
+-.|-....-++..|+. +|++|++++.....+.
T Consensus 94 gd~H~lG~~~v~~~l~~-~G~~vi~LG~~vp~e~ 126 (197)
T TIGR02370 94 GDVHDIGKNIVVTMLRA-NGFDVIDLGRDVPIDT 126 (197)
T ss_pred CchhHHHHHHHHHHHHh-CCcEEEECCCCCCHHH
Confidence 44577778888888888 8888888886544333
No 351
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=26.25 E-value=1.2e+02 Score=26.17 Aligned_cols=35 Identities=11% Similarity=-0.111 Sum_probs=28.5
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhh
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKL 36 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i 36 (481)
|+.|-..=.+.++.+..+ .|..|.|++.+...+.+
T Consensus 8 ~G~GKT~l~~~~~~~~~~-~g~~v~~~s~e~~~~~~ 42 (187)
T cd01124 8 PGTGKTTFALQFLYAGLA-RGEPGLYVTLEESPEEL 42 (187)
T ss_pred CCCCHHHHHHHHHHHHHH-CCCcEEEEECCCCHHHH
Confidence 677888888899988888 89999999987665443
No 352
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=26.25 E-value=1.4e+02 Score=25.64 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=26.1
Q ss_pred EEEEEcccccccCHHHHHHHHHHHHhcCCceEE
Q 042731 268 VLYVSFGSQNTIAASQMMQLAMALEASGKNFIW 300 (481)
Q Consensus 268 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 300 (481)
.+|+|+||-...+...+...+.++...+.--++
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~ 35 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVV 35 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEE
Confidence 699999998877778888888998887753333
No 353
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=26.23 E-value=1.8e+02 Score=28.79 Aligned_cols=11 Identities=36% Similarity=0.827 Sum_probs=9.2
Q ss_pred hCCcEEecccc
Q 042731 370 HGVPIIGWPLA 380 (481)
Q Consensus 370 ~GvP~l~~P~~ 380 (481)
.++|++++|..
T Consensus 121 ~~~P~i~IPTt 131 (375)
T cd08194 121 PGLPLIAIPTT 131 (375)
T ss_pred CCCCEEEECCC
Confidence 36899999985
No 354
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=26.22 E-value=1.5e+02 Score=29.85 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=30.6
Q ss_pred CCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhh
Q 042731 2 AQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKS 38 (481)
Q Consensus 2 ~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~ 38 (481)
+.|-+.-.-.||+.|++ +|+.|.+++.+-+++.+-.
T Consensus 110 GsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~e 145 (451)
T COG0541 110 GSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIE 145 (451)
T ss_pred CCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHH
Confidence 56778888999999999 9999999999888766544
No 355
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=26.12 E-value=44 Score=34.36 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEE
Q 042731 87 PHFKKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIF 131 (481)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~ 131 (481)
..+.+++++. +||++|.... ...+|+++|||+..+
T Consensus 394 ~el~~~i~~~-------~pDl~ig~~~---~~~~a~k~gIP~~~~ 428 (466)
T TIGR01282 394 YEFEEFVEKL-------KPDLVGSGIK---EKYVFQKMGVPFRQM 428 (466)
T ss_pred HHHHHHHHHh-------CCCEEEecCC---ccceeeecCCCcccc
Confidence 4556778888 9999999976 578999999999654
No 356
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=26.11 E-value=2.4e+02 Score=25.10 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=22.2
Q ss_pred CCCChHHHHHHHHHHHhCCCCEEEEEeCCc
Q 042731 2 AQGHIIPFLALARRLEETNKYTITLVNTPL 31 (481)
Q Consensus 2 ~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~ 31 (481)
+-.|-....-++..|++ .|++|++.+...
T Consensus 92 gd~H~lG~~~v~~~l~~-~G~~vi~lG~~~ 120 (201)
T cd02070 92 GDIHDIGKNLVATMLEA-NGFEVIDLGRDV 120 (201)
T ss_pred CccchHHHHHHHHHHHH-CCCEEEECCCCC
Confidence 45677788888888888 888888877543
No 357
>PLN02880 tyrosine decarboxylase
Probab=25.76 E-value=1.8e+02 Score=30.20 Aligned_cols=69 Identities=14% Similarity=0.033 Sum_probs=43.1
Q ss_pred ccceeeccCchhHHHHHHhCC------------cEEecccccch-hhhHHHHHHHhcce----EEeecc--CCcccCHHH
Q 042731 352 VSAFLSHCGWNSVLEALSHGV------------PIIGWPLAAEQ-FYNSKLLEEEMGVC----VEIARG--MSCEVLKED 412 (481)
Q Consensus 352 v~~~I~HGG~gt~~eal~~Gv------------P~l~~P~~~DQ-~~na~~v~~~lG~G----~~~~~~--~~~~~~~~~ 412 (481)
.+++++.||..+.+.||.... +-+++- ..|| +.-..+..+.||+| +.++.+ ...+++.+.
T Consensus 147 ~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~-~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~ 225 (490)
T PLN02880 147 GGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVY-ASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPEL 225 (490)
T ss_pred CceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEE-EcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHH
Confidence 357899999888777765432 222221 2344 44444566677998 344443 245789999
Q ss_pred HHHHHHHHh
Q 042731 413 LSAKIELVM 421 (481)
Q Consensus 413 l~~~i~~vl 421 (481)
|.++|.+..
T Consensus 226 L~~~i~~~~ 234 (490)
T PLN02880 226 LSEAISTDL 234 (490)
T ss_pred HHHHHHHHH
Confidence 999998754
No 358
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=25.74 E-value=4.2e+02 Score=25.41 Aligned_cols=36 Identities=8% Similarity=0.008 Sum_probs=30.0
Q ss_pred CCCChHHHHHHHHHHHhC-CCCEEEEEeCCcchhhhh
Q 042731 2 AQGHIIPFLALARRLEET-NKYTITLVNTPLNLKKLK 37 (481)
Q Consensus 2 ~~GHv~P~l~LA~~L~~~-~Gh~Vt~~~~~~~~~~i~ 37 (481)
+.|++.=..++.+.|+++ .+.+|++++.+.+.+.++
T Consensus 10 ~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~ 46 (322)
T PRK10964 10 SMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPS 46 (322)
T ss_pred chHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHh
Confidence 468888889999999996 599999999987766554
No 359
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=25.66 E-value=70 Score=26.87 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=28.7
Q ss_pred eEEEEEcccccccCHHHHHHHHHHHH-----hcCCceEEEEcCC
Q 042731 267 SVLYVSFGSQNTIAASQMMQLAMALE-----ASGKNFIWVVRPP 305 (481)
Q Consensus 267 ~~V~vs~Gs~~~~~~~~~~~~~~al~-----~~~~~~i~~~~~~ 305 (481)
.+|+|+.|+..+.....+..++.... .....++|+++..
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~ 46 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDA 46 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-T
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCch
Confidence 48999999998766677777777766 2455799999876
No 360
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=25.55 E-value=3.3e+02 Score=27.59 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=27.7
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhh
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKL 36 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i 36 (481)
|+.|-..-.+.+|..+....|+.|.|++.+...+.+
T Consensus 204 pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 204 PSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL 239 (434)
T ss_pred CCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence 677888889999988764159999999988665544
No 361
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=25.47 E-value=4.2e+02 Score=22.50 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=28.2
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchh
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLK 34 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~ 34 (481)
|+.|-..-...++..|.+ .|.+|.++..+.+..
T Consensus 9 ~G~GKTt~~~~la~~~~~-~g~~v~~i~~D~~~~ 41 (173)
T cd03115 9 QGVGKTTTAAKLALYLKK-KGKKVLLVAADTYRP 41 (173)
T ss_pred CCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCCh
Confidence 577888889999999999 899999999876543
No 362
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=25.43 E-value=4.3e+02 Score=22.60 Aligned_cols=28 Identities=11% Similarity=0.175 Sum_probs=20.8
Q ss_pred ccceeeccCc------hhHHHHHHhCCcEEeccc
Q 042731 352 VSAFLSHCGW------NSVLEALSHGVPIIGWPL 379 (481)
Q Consensus 352 v~~~I~HGG~------gt~~eal~~GvP~l~~P~ 379 (481)
..++++|.|- +++.+|...++|+|++.-
T Consensus 65 ~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 65 PGVVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred ceEEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 3447777773 477889999999999875
No 363
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.36 E-value=1.6e+02 Score=29.29 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=28.6
Q ss_pred CCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhh
Q 042731 2 AQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLK 37 (481)
Q Consensus 2 ~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~ 37 (481)
+-|-..-+-.+|..+++ +|+.+.+++.+-|+..+-
T Consensus 111 G~GKTTtc~KlA~y~kk-kG~K~~LvcaDTFRagAf 145 (483)
T KOG0780|consen 111 GSGKTTTCTKLAYYYKK-KGYKVALVCADTFRAGAF 145 (483)
T ss_pred CCCcceeHHHHHHHHHh-cCCceeEEeecccccchH
Confidence 45667778899999999 999999999987765443
No 364
>PRK04148 hypothetical protein; Provisional
Probab=25.27 E-value=2.4e+02 Score=23.43 Aligned_cols=19 Identities=16% Similarity=0.595 Sum_probs=14.8
Q ss_pred HHHHHHHHhCCCCEEEEEeC
Q 042731 10 LALARRLEETNKYTITLVNT 29 (481)
Q Consensus 10 l~LA~~L~~~~Gh~Vt~~~~ 29 (481)
..+|+.|.+ .||+|+.+=-
T Consensus 29 ~~vA~~L~~-~G~~ViaIDi 47 (134)
T PRK04148 29 FKVAKKLKE-SGFDVIVIDI 47 (134)
T ss_pred HHHHHHHHH-CCCEEEEEEC
Confidence 457888888 8998887754
No 365
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=25.14 E-value=7.1e+02 Score=25.02 Aligned_cols=98 Identities=14% Similarity=0.065 Sum_probs=57.7
Q ss_pred CCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHH
Q 042731 265 YTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQV 344 (481)
Q Consensus 265 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~ 344 (481)
++|.|-+|+ ......-...+.+.|+..|+.+++....+. ...-.|++-..+.---|.+.-...
T Consensus 184 ~kp~I~iTm---fGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~--------------GG~aME~Li~~G~~~~VlDlTttE 246 (403)
T PF06792_consen 184 DKPLIGITM---FGVTTPCVDAIRERLEEEGYEVLVFHATGT--------------GGRAMERLIREGQFDGVLDLTTTE 246 (403)
T ss_pred CCcEEEEEC---CCCcHHHHHHHHHHHHhcCCeEEEEcCCCC--------------chHHHHHHHHcCCcEEEEECcHHH
Confidence 466777753 222345567788888888999998766552 011112221001111233544443
Q ss_pred HhhcccCccceeeccCchhHHHHHHhCCcEEecccccc
Q 042731 345 EILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAAE 382 (481)
Q Consensus 345 ~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~D 382 (481)
. -.+ +-+-|..+|-.=.-.|...|+|+|+.|-.-|
T Consensus 247 l-~d~--l~GGv~sagp~Rl~AA~~~GIP~Vvs~GalD 281 (403)
T PF06792_consen 247 L-ADE--LFGGVLSAGPDRLEAAARAGIPQVVSPGALD 281 (403)
T ss_pred H-HHH--HhCCCCCCCchHHHHHHHcCCCEEEecCccc
Confidence 2 111 1135778888888899999999999997554
No 366
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=25.07 E-value=1.2e+02 Score=22.29 Aligned_cols=28 Identities=21% Similarity=0.134 Sum_probs=20.1
Q ss_pred CccEEEeCC--CCchHHHHHHHhCCceEEE
Q 042731 104 KPLCIITDT--FLGWCKETAQEYGIFHAIF 131 (481)
Q Consensus 104 ~pD~vI~D~--~~~~~~~~A~~lgiP~v~~ 131 (481)
+.--||++. ...-++.+|+.+|||+++-
T Consensus 30 ~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg 59 (80)
T PF00391_consen 30 RVAGIVTEEGGPTSHAAILARELGIPAIVG 59 (80)
T ss_dssp TSSEEEESSSSTTSHHHHHHHHTT-EEEES
T ss_pred heEEEEEEcCCccchHHHHHHHcCCCEEEe
Confidence 566677664 3347789999999999973
No 367
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=25.00 E-value=4.9e+02 Score=23.10 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=22.3
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeC
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNT 29 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~ 29 (481)
++.|-....+.+|-+... .|++|.++-.
T Consensus 31 ~GkGKtt~a~g~a~ra~g-~G~~V~ivQF 58 (191)
T PRK05986 31 NGKGKSTAAFGMALRAVG-HGKKVGVVQF 58 (191)
T ss_pred CCCChHHHHHHHHHHHHH-CCCeEEEEEE
Confidence 356777777888888888 8999999975
No 368
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.93 E-value=2.3e+02 Score=29.92 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=21.3
Q ss_pred ccceeeccCch------hHHHHHHhCCcEEecc
Q 042731 352 VSAFLSHCGWN------SVLEALSHGVPIIGWP 378 (481)
Q Consensus 352 v~~~I~HGG~g------t~~eal~~GvP~l~~P 378 (481)
.+++++|.|-| .+++|...++|+|++.
T Consensus 68 ~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 68 VGCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34478887744 6789999999999984
No 369
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.88 E-value=98 Score=28.42 Aligned_cols=42 Identities=21% Similarity=0.102 Sum_probs=32.3
Q ss_pred hhhhHHHHHHHHHHhhccCCCCccEEEeCCCCc---hHHHHHHHhCCceEE
Q 042731 83 ASLEPHFKKLISELVNEQNGQKPLCIITDTFLG---WCKETAQEYGIFHAI 130 (481)
Q Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~---~~~~~A~~lgiP~v~ 130 (481)
..-.+.|..+++.+. +-++.+.|..++ -+..+|.+.|||++.
T Consensus 134 tsn~~aM~~~m~~Lk------~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 134 TSNEDAMEKLMEALK------ERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred cCcHHHHHHHHHHHH------HCCeEEEcccccccchhhhhHhhcCCceee
Confidence 344567788888884 569999997765 346889999999985
No 370
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=24.75 E-value=4e+02 Score=27.35 Aligned_cols=99 Identities=20% Similarity=0.322 Sum_probs=52.7
Q ss_pred CeEEEE---Eccccc-----ccCHHHHHHHHHHHHhcCCceEEEEcCCC--CCCCcchhhhcCCCchhHHHHhccCCCcE
Q 042731 266 TSVLYV---SFGSQN-----TIAASQMMQLAMALEASGKNFIWVVRPPI--GFDINSEFKANKWLPRGFEERIKCSGQGL 335 (481)
Q Consensus 266 ~~~V~v---s~Gs~~-----~~~~~~~~~~~~al~~~~~~~i~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 335 (481)
++.|+| ++|-|. .....+...+-.|+.+.+..-||+...+. +=...|.+.- ..++. ...+
T Consensus 143 ~~~vliidqt~~dma~~fg~a~~~~~l~m~~~ai~enp~a~i~~kthpdvl~gkkqg~lt~-~~~~~---------r~~l 212 (671)
T COG3563 143 EETVLIIDQTFGDMAIQFGGADASTFLLMFQTAINENPQADIWVKTHPDVLCGKKQGYLTQ-LSQQH---------RVHL 212 (671)
T ss_pred CceEEEEecccchhheecCCcchhHHHHHHHHHHhcCCcccEEEEeCCchhcCcccchhhh-hccCc---------eEEE
Confidence 344554 455553 13456677788899999999999764431 0001111111 00111 1222
Q ss_pred EEecccCHHHhhccc-CccceeeccCchhHHHHHHhCCcEEeccc
Q 042731 336 VVHKWAPQVEILSHR-SVSAFLSHCGWNSVLEALSHGVPIIGWPL 379 (481)
Q Consensus 336 ~v~~~ip~~~ll~~~-~v~~~I~HGG~gt~~eal~~GvP~l~~P~ 379 (481)
...++=| -.+|.+- .|.|+-+|-| .|||.+|+|.++...
T Consensus 213 l~edfnp-isll~~~dkvy~~ts~mg----feall~~~~~~~fg~ 252 (671)
T COG3563 213 LAEDFNP-ISLLQNVDKVYCVTSQMG----FEALLCGKPLTTFGL 252 (671)
T ss_pred ecccCCh-HHHHHhcceeEEeecccc----HHHHhcCCceeeecc
Confidence 3333333 3445543 3444555555 599999999998744
No 371
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=24.44 E-value=89 Score=24.53 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCCcchhhhh
Q 042731 7 IPFLALARRLEETNKYTITLVNTPLNLKKLK 37 (481)
Q Consensus 7 ~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~ 37 (481)
+|.+.|+++|.+ +|.+|.+.=+-.....+.
T Consensus 17 Sp~~~l~~~L~~-~g~~V~~~DP~v~~~~~~ 46 (106)
T PF03720_consen 17 SPALELIEELKE-RGAEVSVYDPYVDEEEIK 46 (106)
T ss_dssp -HHHHHHHHHHH-TT-EEEEE-TTSHHHHHH
T ss_pred CHHHHHHHHHHH-CCCEEEEECCccChHHHH
Confidence 799999999999 999988877654444443
No 372
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.29 E-value=5.8e+02 Score=23.73 Aligned_cols=42 Identities=12% Similarity=0.013 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhccCCCCccEEEeCCCCc--hHHHHHHHhCCceEEEechh
Q 042731 87 PHFKKLISELVNEQNGQKPLCIITDTFLG--WCKETAQEYGIFHAIFIGGG 135 (481)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~pD~vI~D~~~~--~~~~~A~~lgiP~v~~~~~~ 135 (481)
..+.+.+++. +..+|+++.... .+-.+|+..|+|.+.+.+..
T Consensus 207 ~~l~~~ik~~-------~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~ 250 (266)
T cd01018 207 KRLIDLAKEK-------GVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLA 250 (266)
T ss_pred HHHHHHHHHc-------CCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcH
Confidence 3445666666 899999997665 55689999999998876543
No 373
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=24.19 E-value=78 Score=30.64 Aligned_cols=37 Identities=27% Similarity=0.471 Sum_probs=29.6
Q ss_pred hhcccCccceeeccCchhHHHHHH---hCCcEEecccccc
Q 042731 346 ILSHRSVSAFLSHCGWNSVLEALS---HGVPIIGWPLAAE 382 (481)
Q Consensus 346 ll~~~~v~~~I~HGG~gt~~eal~---~GvP~l~~P~~~D 382 (481)
-|..-+++++|.=||-+|+.-|.. +|+|+|++|-.-|
T Consensus 87 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTID 126 (317)
T cd00763 87 QLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTID 126 (317)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEeccccc
Confidence 355567889999999999877754 5999999998654
No 374
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=24.14 E-value=4.2e+02 Score=25.52 Aligned_cols=100 Identities=16% Similarity=0.153 Sum_probs=60.2
Q ss_pred CCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHH
Q 042731 265 YTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQV 344 (481)
Q Consensus 265 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~ 344 (481)
.+.+-.|.+|.++ ..+++-++..|.+++..-.... .. ..+ ..+.+..
T Consensus 145 gktvGIiG~G~IG-------~~vA~~~~~fgm~V~~~d~~~~--------------~~---------~~~---~~~~~l~ 191 (311)
T PRK08410 145 GKKWGIIGLGTIG-------KRVAKIAQAFGAKVVYYSTSGK--------------NK---------NEE---YERVSLE 191 (311)
T ss_pred CCEEEEECCCHHH-------HHHHHHHhhcCCEEEEECCCcc--------------cc---------ccC---ceeecHH
Confidence 3668999999997 5566666677888765533210 00 111 2456788
Q ss_pred HhhcccCccceeeccCchhHHHHHHhCCcEEeccccc--chhhhHHHHHHHhcceE-EeeccCCcccCHHHHHHHHH
Q 042731 345 EILSHRSVSAFLSHCGWNSVLEALSHGVPIIGWPLAA--EQFYNSKLLEEEMGVCV-EIARGMSCEVLKEDLSAKIE 418 (481)
Q Consensus 345 ~ll~~~~v~~~I~HGG~gt~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~G~-~~~~~~~~~~~~~~l~~~i~ 418 (481)
++|+.+++ ++-| +|... ....|+..+... +=|. .+..++...+..+.|.++++
T Consensus 192 ell~~sDv--v~lh------------------~Plt~~T~~li~~~~~~~M-k~~a~lIN~aRG~vVDe~AL~~AL~ 247 (311)
T PRK08410 192 ELLKTSDI--ISIH------------------APLNEKTKNLIAYKELKLL-KDGAILINVGRGGIVNEKDLAKALD 247 (311)
T ss_pred HHhhcCCE--EEEe------------------CCCCchhhcccCHHHHHhC-CCCeEEEECCCccccCHHHHHHHHH
Confidence 99999886 5555 45443 345566666644 5443 33334556666766666664
No 375
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=24.06 E-value=2.7e+02 Score=26.30 Aligned_cols=90 Identities=19% Similarity=0.238 Sum_probs=54.1
Q ss_pred hhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcE
Q 042731 256 CKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGL 335 (481)
Q Consensus 256 ~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 335 (481)
..++|... +.++++++|+.... ...+...|...|.++......+.
T Consensus 123 av~~L~~A--~rI~~~G~g~S~~v----A~~~~~~l~~ig~~~~~~~d~~~----------------------------- 167 (281)
T COG1737 123 AVELLAKA--RRIYFFGLGSSGLV----ASDLAYKLMRIGLNVVALSDTHG----------------------------- 167 (281)
T ss_pred HHHHHHcC--CeEEEEEechhHHH----HHHHHHHHHHcCCceeEecchHH-----------------------------
Confidence 44556665 55788887777532 23456666677877766654331
Q ss_pred EEecccCHHHhhcccCccceeeccCch-----hHHHHHHhCCcEEecccccchh
Q 042731 336 VVHKWAPQVEILSHRSVSAFLSHCGWN-----SVLEALSHGVPIIGWPLAAEQF 384 (481)
Q Consensus 336 ~v~~~ip~~~ll~~~~v~~~I~HGG~g-----t~~eal~~GvP~l~~P~~~DQ~ 384 (481)
-+ .+...+...++-.+|+|.|.. .+..|-..|+|+|.+=...+-|
T Consensus 168 ---~~-~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~sp 217 (281)
T COG1737 168 ---QL-MQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSP 217 (281)
T ss_pred ---HH-HHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCc
Confidence 11 122334444444589999964 4445678899999995544444
No 376
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=24.05 E-value=5.5e+02 Score=23.35 Aligned_cols=35 Identities=9% Similarity=-0.177 Sum_probs=26.4
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhh
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKL 36 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i 36 (481)
|+.|-..-.+.++.+-.+ +|..+.|++.+...+.+
T Consensus 30 pGsGKT~la~~~l~~~~~-~ge~~lyvs~ee~~~~i 64 (237)
T TIGR03877 30 PGTGKSIFSQQFLWNGLQ-MGEPGIYVALEEHPVQV 64 (237)
T ss_pred CCCCHHHHHHHHHHHHHH-cCCcEEEEEeeCCHHHH
Confidence 567777777887766557 79999999987755443
No 377
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=24.00 E-value=84 Score=32.75 Aligned_cols=31 Identities=19% Similarity=0.104 Sum_probs=24.8
Q ss_pred HHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEE
Q 042731 91 KLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIF 131 (481)
Q Consensus 91 ~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~ 131 (481)
+.+++. +||++|.... ...+|+++|||++-.
T Consensus 392 ~~l~~~-------~~Dllig~s~---~~~~A~k~gIP~ld~ 422 (513)
T TIGR01861 392 EAMEML-------KPDIILTGKR---PGEVSKKMRVPYLNA 422 (513)
T ss_pred HHHHhc-------CCCEEEecCc---cchhHhhcCCCEEEc
Confidence 455666 8999999976 457999999999753
No 378
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=23.97 E-value=8.9e+02 Score=25.73 Aligned_cols=85 Identities=22% Similarity=0.258 Sum_probs=45.3
Q ss_pred ceeeccCchhHHH---HHHhCCcEEecccccc--hhhhHHHHHHHh--cceEE-eeccCCcccCHHHHHHHHHHHhcCCh
Q 042731 354 AFLSHCGWNSVLE---ALSHGVPIIGWPLAAE--QFYNSKLLEEEM--GVCVE-IARGMSCEVLKEDLSAKIELVMNETE 425 (481)
Q Consensus 354 ~~I~HGG~gt~~e---al~~GvP~l~~P~~~D--Q~~na~~v~~~l--G~G~~-~~~~~~~~~~~~~l~~~i~~vl~~~~ 425 (481)
.||.=.|.-.-+- |-..-+|+|.+|.... -...+-.-.-.+ |+.+. +.. +...++..++-.|..+ .|+
T Consensus 468 v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~~p~g~pv~~v~i--~~~~~aa~~a~~i~~~-~~~- 543 (577)
T PLN02948 468 VIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAI--GNATNAGLLAVRMLGA-SDP- 543 (577)
T ss_pred EEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhcCCCCCeEEEEec--CChHHHHHHHHHHHhc-CCH-
Confidence 4777777532222 2233689999998542 223332111122 42211 111 1345666666555332 455
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 042731 426 KGTDLRNKANEVKVIIKNAV 445 (481)
Q Consensus 426 ~~~~~~~~a~~~~~~~~~~~ 445 (481)
.++++.+.+++.+++.+
T Consensus 544 ---~~~~~~~~~~~~~~~~~ 560 (577)
T PLN02948 544 ---DLLDKMEAYQEDMRDMV 560 (577)
T ss_pred ---HHHHHHHHHHHHHHHHH
Confidence 78888888888888664
No 379
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=23.83 E-value=69 Score=26.16 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=27.9
Q ss_pred CChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhh
Q 042731 4 GHIIPFLALARRLEETNKYTITLVNTPLNLKKLKS 38 (481)
Q Consensus 4 GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~ 38 (481)
++..-...+.+.|++ .|++|.++.++...+.+..
T Consensus 11 ~~~~~~~~~l~~L~~-~g~~v~vv~S~~A~~~~~~ 44 (129)
T PF02441_consen 11 IAAYKAPDLLRRLKR-AGWEVRVVLSPSAERFVTP 44 (129)
T ss_dssp GGGGGHHHHHHHHHT-TTSEEEEEESHHHHHHSHH
T ss_pred HHHHHHHHHHHHHhh-CCCEEEEEECCcHHHHhhh
Confidence 334447889999999 9999999999888777766
No 380
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=23.81 E-value=79 Score=26.35 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=24.8
Q ss_pred HHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEE
Q 042731 11 ALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLL 49 (481)
Q Consensus 11 ~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~ 49 (481)
-+|-.|.+ .||+|++++.....+.+.+ .++++.
T Consensus 12 ~~a~~L~~-~g~~V~l~~r~~~~~~~~~-----~g~~~~ 44 (151)
T PF02558_consen 12 LYAARLAQ-AGHDVTLVSRSPRLEAIKE-----QGLTIT 44 (151)
T ss_dssp HHHHHHHH-TTCEEEEEESHHHHHHHHH-----HCEEEE
T ss_pred HHHHHHHH-CCCceEEEEccccHHhhhh-----eeEEEE
Confidence 47889999 9999999998774455666 455554
No 381
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=23.63 E-value=2.3e+02 Score=28.29 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=23.0
Q ss_pred hhhhhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEE
Q 042731 256 CKKWLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWV 301 (481)
Q Consensus 256 ~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 301 (481)
+.+++...+ +.+++|+-++.. ....+..+.+.|...+..+.+.
T Consensus 14 l~~~~~~~g-~~~livt~~~~~--~~~~~~~v~~~L~~~~~~~~~f 56 (386)
T cd08191 14 LPRLAARLG-SRALIVTDERMA--GTPVFAELVQALAAAGVEVEVF 56 (386)
T ss_pred HHHHHHHcC-CeEEEEECcchh--hcchHHHHHHHHHHcCCeEEEE
Confidence 334444433 345556633322 2355666777787777766544
No 382
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=23.44 E-value=7.2e+02 Score=24.48 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=28.8
Q ss_pred eeccCchh-HHHHHHh------CCcEEecccccchhh-hHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHh
Q 042731 356 LSHCGWNS-VLEALSH------GVPIIGWPLAAEQFY-NSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVM 421 (481)
Q Consensus 356 I~HGG~gt-~~eal~~------GvP~l~~P~~~DQ~~-na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl 421 (481)
..+||+|+ +.+.+.. .+|+..+-. .|.+. -+..+++. -.++++.|.+++.+++
T Consensus 295 ~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~-~d~~~p~~~~le~~------------~~~~~~~i~~~~~~~~ 355 (355)
T PTZ00182 295 PPTCGIGAEIAAQIMEDCFLYLEAPIKRVCG-ADTPFPYAKNLEPA------------YLPDKEKVVEAAKRVL 355 (355)
T ss_pred CCCCCHHHHHHHHHHHhhhhhcCCCeEEeCC-CCccCCCChHHHHH------------hCCCHHHHHHHHHHhC
Confidence 34789876 3444433 345544422 24333 23334433 3567888888887764
No 383
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.43 E-value=1.2e+02 Score=27.93 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=24.6
Q ss_pred HHHHHHHhhccCCCCccEEEeCCCCch--HHH-HHHHhCCceEEEec
Q 042731 90 KKLISELVNEQNGQKPLCIITDTFLGW--CKE-TAQEYGIFHAIFIG 133 (481)
Q Consensus 90 ~~ll~~~~~~~~~~~pD~vI~D~~~~~--~~~-~A~~lgiP~v~~~~ 133 (481)
.+.|..+ +||+||....... ... +.+.+|||++.+..
T Consensus 67 ~E~i~~l-------~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 67 YEKIAAL-------KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred HHHHHhc-------CCCEEEEecCCccchhHHHHHHhhCCCEEEEec
Confidence 4566677 8999998754332 122 33448999988764
No 384
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=23.40 E-value=5.4e+02 Score=24.82 Aligned_cols=28 Identities=36% Similarity=0.441 Sum_probs=18.4
Q ss_pred ccceeeccCchhHHHH-----HHh--CCcEEecccc
Q 042731 352 VSAFLSHCGWNSVLEA-----LSH--GVPIIGWPLA 380 (481)
Q Consensus 352 v~~~I~HGG~gt~~ea-----l~~--GvP~l~~P~~ 380 (481)
.+++|.=||- |++.. +.+ |+|++.+|..
T Consensus 79 ~d~IIaiGGG-s~~D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 79 VDAVIAVGGG-STLDTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred cCEEEEeCCc-hHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 4458888873 33322 233 9999999985
No 385
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=23.20 E-value=91 Score=28.47 Aligned_cols=25 Identities=8% Similarity=0.219 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHHHhCCCCEEEEEeCC
Q 042731 5 HIIPFLALARRLEETNKYTITLVNTP 30 (481)
Q Consensus 5 Hv~P~l~LA~~L~~~~Gh~Vt~~~~~ 30 (481)
|..-+.+.|.+|++ +|++|+++...
T Consensus 47 ~~saMRhfa~~L~~-~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRA-KGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHH-TT--EEEE-TT
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEeCC
Confidence 56678889999999 99999999987
No 386
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=23.08 E-value=1e+02 Score=25.36 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=20.6
Q ss_pred hhcccCccceeeccCchhHHHHHHh----------CCcEEecc
Q 042731 346 ILSHRSVSAFLSHCGWNSVLEALSH----------GVPIIGWP 378 (481)
Q Consensus 346 ll~~~~v~~~I~HGG~gt~~eal~~----------GvP~l~~P 378 (481)
++..++ ..++.-||.||+.|.... .+|++++-
T Consensus 50 m~~~sd-a~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~ 91 (133)
T PF03641_consen 50 MIESSD-AFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLN 91 (133)
T ss_dssp HHHHES-EEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEE
T ss_pred HHHhCC-EEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeC
Confidence 344444 368889999999887432 34988875
No 387
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=22.93 E-value=7.4e+02 Score=24.44 Aligned_cols=146 Identities=15% Similarity=0.214 Sum_probs=80.4
Q ss_pred CCeEEEEEcccccccCHHHHHHHHHHHHhc---------CC-ceE-EEEcCCCCCCCcchhhhcCCCchhHHHHhccCC-
Q 042731 265 YTSVLYVSFGSQNTIAASQMMQLAMALEAS---------GK-NFI-WVVRPPIGFDINSEFKANKWLPRGFEERIKCSG- 332 (481)
Q Consensus 265 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~---------~~-~~i-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 332 (481)
.++.++||- .+....|.+-.+++|+... +. +++ +++|.+ .+.+.....+....
T Consensus 253 ~~pallvsS--TswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKG-------------PlkE~Y~~~I~~~~~ 317 (444)
T KOG2941|consen 253 ERPALLVSS--TSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKG-------------PLKEKYSQEIHEKNL 317 (444)
T ss_pred CCCeEEEec--CCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCC-------------chhHHHHHHHHHhcc
Confidence 456688863 3334556778888888732 11 233 344433 24444443333111
Q ss_pred Cc-EEEecccC---HHHhhcccCccceeeccCch-----hHHHHHHhCCcEEecccccchhhhHHHHHHHhcc-eEEeec
Q 042731 333 QG-LVVHKWAP---QVEILSHRSVSAFLSHCGWN-----SVLEALSHGVPIIGWPLAAEQFYNSKLLEEEMGV-CVEIAR 402 (481)
Q Consensus 333 ~~-~~v~~~ip---~~~ll~~~~v~~~I~HGG~g-----t~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~-G~~~~~ 402 (481)
.+ -+...|+. +-.+|+.++.+...|-.-.| -+..-.-+|+|++.+-+.- -.-++++ |. |...
T Consensus 318 ~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkc-----l~ELVkh-~eNGlvF-- 389 (444)
T KOG2941|consen 318 QHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKC-----LDELVKH-GENGLVF-- 389 (444)
T ss_pred cceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchh-----HHHHHhc-CCCceEe--
Confidence 11 12345644 45689898987666655544 3445556677777664321 1122323 32 3222
Q ss_pred cCCcccCHHHHHHHHHHHhc----CChhhHHHHHHHHHHH
Q 042731 403 GMSCEVLKEDLSAKIELVMN----ETEKGTDLRNKANEVK 438 (481)
Q Consensus 403 ~~~~~~~~~~l~~~i~~vl~----~~~~~~~~~~~a~~~~ 438 (481)
-++++|++.+.-+++ |.++.+++++|+++-+
T Consensus 390 -----~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~~ 424 (444)
T KOG2941|consen 390 -----EDSEELAEQLQMLFKNFPDNADELNQLKKNLREEQ 424 (444)
T ss_pred -----ccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH
Confidence 257899999988888 5556667777777653
No 388
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=22.70 E-value=1.3e+02 Score=30.88 Aligned_cols=26 Identities=12% Similarity=-0.046 Sum_probs=22.2
Q ss_pred CccEEEeCCCCchHHHHHHHhCCceEEEe
Q 042731 104 KPLCIITDTFLGWCKETAQEYGIFHAIFI 132 (481)
Q Consensus 104 ~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (481)
+||++|.... ...+|+++|||++.+.
T Consensus 388 ~~Dliig~s~---~~~~a~k~gip~~~~g 413 (461)
T TIGR02931 388 ELDLILGHSK---GRFISIDYNIPMVRVG 413 (461)
T ss_pred CCCEEEECcc---hHHHHHHcCCCEEEec
Confidence 7999999864 7889999999998753
No 389
>PRK06270 homoserine dehydrogenase; Provisional
Probab=22.68 E-value=7.2e+02 Score=24.23 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=35.7
Q ss_pred CHHHhhcccCccceee------ccC---chhHHHHHHhCCcEEe---cccccchhhhHHHHHHHhcceEEe
Q 042731 342 PQVEILSHRSVSAFLS------HCG---WNSVLEALSHGVPIIG---WPLAAEQFYNSKLLEEEMGVCVEI 400 (481)
Q Consensus 342 p~~~ll~~~~v~~~I~------HGG---~gt~~eal~~GvP~l~---~P~~~DQ~~na~~v~~~lG~G~~~ 400 (481)
+..++|..++++.+|- |+| ..-+.+||.+|+++|+ -|....-..-.....+. |+.+..
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~-g~~~~~ 149 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKN-GVRFRY 149 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHc-CCEEEE
Confidence 5567776665555665 443 4456799999999999 47654333333334444 666554
No 390
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=22.66 E-value=4.9e+02 Score=27.36 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=21.7
Q ss_pred ccceeeccCc------hhHHHHHHhCCcEEecc
Q 042731 352 VSAFLSHCGW------NSVLEALSHGVPIIGWP 378 (481)
Q Consensus 352 v~~~I~HGG~------gt~~eal~~GvP~l~~P 378 (481)
..++++|.|- +.+.+|...++|+|++-
T Consensus 65 pgv~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~ 97 (549)
T PRK06457 65 PSACMGTSGPGSIHLLNGLYDAKMDHAPVIALT 97 (549)
T ss_pred CeEEEeCCCCchhhhHHHHHHHHhcCCCEEEEe
Confidence 3458888884 47789999999999984
No 391
>PLN02727 NAD kinase
Probab=22.56 E-value=1.5e+02 Score=33.02 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=38.9
Q ss_pred ccceeeccCchhHHHHHHh----CCcEEecccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhcCC
Q 042731 352 VSAFLSHCGWNSVLEALSH----GVPIIGWPLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMNET 424 (481)
Q Consensus 352 v~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~~~ 424 (481)
++++|+=||=||++.|+.. ++|+|++-+. -+|.. ..+..+++.+.|.+++++.
T Consensus 744 ~DLVIvLGGDGTlLrAar~~~~~~iPILGINlG--------------rLGFL------Tdi~~ee~~~~L~~Il~G~ 800 (986)
T PLN02727 744 VDFVACLGGDGVILHASNLFRGAVPPVVSFNLG--------------SLGFL------TSHYFEDFRQDLRQVIHGN 800 (986)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCC--------------Ccccc------ccCCHHHHHHHHHHHHcCC
Confidence 5569999999999999774 6898888211 12322 2356788999999999876
No 392
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.48 E-value=3.9e+02 Score=28.32 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=21.6
Q ss_pred ccceeeccCch------hHHHHHHhCCcEEecc
Q 042731 352 VSAFLSHCGWN------SVLEALSHGVPIIGWP 378 (481)
Q Consensus 352 v~~~I~HGG~g------t~~eal~~GvP~l~~P 378 (481)
.+++++|.|-| .+++|...++|+|++-
T Consensus 68 ~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~ 100 (574)
T PRK07979 68 VGVVLVTSGPGATNAITGIATAYMDSIPLVVLS 100 (574)
T ss_pred ceEEEECCCccHhhhHHHHHHHhhcCCCEEEEE
Confidence 45578887744 6789999999999994
No 393
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=22.41 E-value=1.3e+02 Score=30.78 Aligned_cols=26 Identities=12% Similarity=-0.132 Sum_probs=22.1
Q ss_pred CccEEEeCCCCchHHHHHHHhCCceEEEe
Q 042731 104 KPLCIITDTFLGWCKETAQEYGIFHAIFI 132 (481)
Q Consensus 104 ~pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (481)
+||++|.... ...+|+++|||++.+.
T Consensus 381 ~~dliig~s~---~~~~A~~~gip~~~~g 406 (454)
T cd01973 381 ELDLILGHSK---GRYIAIDNNIPMVRVG 406 (454)
T ss_pred CCCEEEECCc---cHHHHHHcCCCEEEec
Confidence 6999999864 6899999999998753
No 394
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=22.37 E-value=1.7e+02 Score=25.96 Aligned_cols=29 Identities=14% Similarity=-0.109 Sum_probs=22.2
Q ss_pred CccEEEeCC--CCchHHHHHHHhCCceEEEe
Q 042731 104 KPLCIITDT--FLGWCKETAQEYGIFHAIFI 132 (481)
Q Consensus 104 ~pD~vI~D~--~~~~~~~~A~~lgiP~v~~~ 132 (481)
++|+|++-. -++.|..+|..+|+|++...
T Consensus 50 ~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vR 80 (191)
T TIGR01744 50 GITKIVTIEASGIAPAIMTGLKLGVPVVFAR 80 (191)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 799998542 22477789999999999754
No 395
>PRK08760 replicative DNA helicase; Provisional
Probab=22.32 E-value=3.3e+02 Score=28.11 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=27.3
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhh
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKK 35 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~ 35 (481)
|+.|-..-.+.+|...+.+.|+.|.|++.+-....
T Consensus 238 Pg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~q 272 (476)
T PRK08760 238 PAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQ 272 (476)
T ss_pred CCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHH
Confidence 77888999999998876415999999998765443
No 396
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=22.32 E-value=6e+02 Score=23.17 Aligned_cols=152 Identities=10% Similarity=-0.003 Sum_probs=74.3
Q ss_pred hhcCCCCCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEe
Q 042731 259 WLDTKPYTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVH 338 (481)
Q Consensus 259 ~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~ 338 (481)
||+.. .+.++.|..|.+.. .=+..|...+..+.++... +-+++.+-.+ .+.+...
T Consensus 20 ~l~~~-~~~VLVVGGG~VA~-------RK~~~Ll~~gA~VtVVap~---------------i~~el~~l~~--~~~i~~~ 74 (223)
T PRK05562 20 SLLSN-KIKVLIIGGGKAAF-------IKGKTFLKKGCYVYILSKK---------------FSKEFLDLKK--YGNLKLI 74 (223)
T ss_pred EEECC-CCEEEEECCCHHHH-------HHHHHHHhCCCEEEEEcCC---------------CCHHHHHHHh--CCCEEEE
Confidence 34444 35577777776652 2234555677777666543 2233333222 2333332
Q ss_pred cccCHHHhhcccCccceeeccCchhHHHHH-----HhCCcEEecccccch-hhhHHHHHHHhcceEEeecc-CCcccCHH
Q 042731 339 KWAPQVEILSHRSVSAFLSHCGWNSVLEAL-----SHGVPIIGWPLAAEQ-FYNSKLLEEEMGVCVEIARG-MSCEVLKE 411 (481)
Q Consensus 339 ~~ip~~~ll~~~~v~~~I~HGG~gt~~eal-----~~GvP~l~~P~~~DQ-~~na~~v~~~lG~G~~~~~~-~~~~~~~~ 411 (481)
.--.+...|..+. .+|.--+--.+.+.+ ..|+++.++-....- +..-+.+.+- ++-+.+..+ .+.. -+.
T Consensus 75 ~r~~~~~dl~g~~--LViaATdD~~vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PAiv~rg-~l~IaIST~G~sP~-lar 150 (223)
T PRK05562 75 KGNYDKEFIKDKH--LIVIATDDEKLNNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQRSTK-NFVFALNTKGGSPK-TSV 150 (223)
T ss_pred eCCCChHHhCCCc--EEEECCCCHHHHHHHHHHHHHcCCeEEEcCCcccCeEEeeeEEecC-CEEEEEECCCcCcH-HHH
Confidence 2111223344444 377776755555543 346676655221111 2222333322 344444442 2222 346
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 042731 412 DLSAKIELVMNETEKGTDLRNKANEVKVIIK 442 (481)
Q Consensus 412 ~l~~~i~~vl~~~~~~~~~~~~a~~~~~~~~ 442 (481)
.|++.|.+++. . ...+-+.+.+++..++
T Consensus 151 ~lR~~ie~~l~-~--~~~l~~~l~~~R~~vk 178 (223)
T PRK05562 151 FIGEKVKNFLK-K--YDDFIEYVTKIRNKAK 178 (223)
T ss_pred HHHHHHHHHHH-H--HHHHHHHHHHHHHHHH
Confidence 78889988882 2 3356666666666665
No 397
>PLN02590 probable tyrosine decarboxylase
Probab=22.13 E-value=2.8e+02 Score=29.15 Aligned_cols=69 Identities=13% Similarity=0.100 Sum_probs=43.2
Q ss_pred ccceeeccCchhHHHHHHh------------CCcEEecccccch-hhhHHHHHHHhcce---EE-eecc--CCcccCHHH
Q 042731 352 VSAFLSHCGWNSVLEALSH------------GVPIIGWPLAAEQ-FYNSKLLEEEMGVC---VE-IARG--MSCEVLKED 412 (481)
Q Consensus 352 v~~~I~HGG~gt~~eal~~------------GvP~l~~P~~~DQ-~~na~~v~~~lG~G---~~-~~~~--~~~~~~~~~ 412 (481)
.+++++.||.-+.+.||.. +.|-+++- ..|| +.-..+..+.||+| ++ ++.+ ...+++.+.
T Consensus 195 ~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy-~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~ 273 (539)
T PLN02590 195 GGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVY-GSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPES 273 (539)
T ss_pred CceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEE-ecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHH
Confidence 4578999998777766644 34543332 2455 33444566677997 22 2323 235789999
Q ss_pred HHHHHHHHh
Q 042731 413 LSAKIELVM 421 (481)
Q Consensus 413 l~~~i~~vl 421 (481)
|.++|.+-.
T Consensus 274 L~~~I~~d~ 282 (539)
T PLN02590 274 LEEAISHDL 282 (539)
T ss_pred HHHHHHHHH
Confidence 999997754
No 398
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=22.12 E-value=5e+02 Score=22.20 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=21.8
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeC
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNT 29 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~ 29 (481)
++.|-..-.+.+|-+... +|++|.|+..
T Consensus 11 ~G~Gkt~~a~g~~~ra~~-~g~~v~~vQF 38 (159)
T cd00561 11 NGKGKTTAALGLALRALG-HGYRVGVVQF 38 (159)
T ss_pred CCCCHHHHHHHHHHHHHH-CCCeEEEEEE
Confidence 456777777888888888 8999999653
No 399
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=22.10 E-value=1.8e+02 Score=22.99 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=23.7
Q ss_pred CCCChHHHHHHHHHHHhCCCCEEEEEeCCc
Q 042731 2 AQGHIIPFLALARRLEETNKYTITLVNTPL 31 (481)
Q Consensus 2 ~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~ 31 (481)
..-|-..+.-||..|++ .||+|.++....
T Consensus 10 ~~~~~lGl~~la~~l~~-~G~~v~~~d~~~ 38 (121)
T PF02310_consen 10 GEVHPLGLLYLAAYLRK-AGHEVDILDANV 38 (121)
T ss_dssp TSSTSHHHHHHHHHHHH-TTBEEEEEESSB
T ss_pred CcchhHHHHHHHHHHHH-CCCeEEEECCCC
Confidence 44567788899999999 999999996554
No 400
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=22.09 E-value=3.6e+02 Score=28.30 Aligned_cols=38 Identities=8% Similarity=0.207 Sum_probs=29.1
Q ss_pred HHHHHHHhhccCCCCccEEEeCCCCchHHHHHHHhCCceEEEech
Q 042731 90 KKLISELVNEQNGQKPLCIITDTFLGWCKETAQEYGIFHAIFIGG 134 (481)
Q Consensus 90 ~~ll~~~~~~~~~~~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~~ 134 (481)
...++++... +.++||+|.. +..+|+++|++.+.+.+.
T Consensus 135 ~~~~~~l~~~----G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 135 RSCVNDLRAR----GIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHC----CCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 4444555443 8999999964 689999999999988764
No 401
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=22.03 E-value=92 Score=30.27 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=29.4
Q ss_pred hhcccCccceeeccCchhHHHHHH---hCCcEEecccccc
Q 042731 346 ILSHRSVSAFLSHCGWNSVLEALS---HGVPIIGWPLAAE 382 (481)
Q Consensus 346 ll~~~~v~~~I~HGG~gt~~eal~---~GvP~l~~P~~~D 382 (481)
-|..-+++++|.=||.+|+..|.. .|+|+|++|-.-|
T Consensus 89 ~l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkTID 128 (324)
T TIGR02483 89 NLKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKTID 128 (324)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccccC
Confidence 344556888999999999887755 5999999998644
No 402
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=22.01 E-value=1.9e+02 Score=28.79 Aligned_cols=11 Identities=55% Similarity=0.912 Sum_probs=9.2
Q ss_pred hCCcEEecccc
Q 042731 370 HGVPIIGWPLA 380 (481)
Q Consensus 370 ~GvP~l~~P~~ 380 (481)
.++|+|.+|..
T Consensus 129 ~~~P~i~IPTT 139 (379)
T TIGR02638 129 PGVPIIAIPTT 139 (379)
T ss_pred CCCCEEEECCC
Confidence 36899999985
No 403
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=21.96 E-value=3.8e+02 Score=28.32 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=21.7
Q ss_pred ccceeeccCch------hHHHHHHhCCcEEecc
Q 042731 352 VSAFLSHCGWN------SVLEALSHGVPIIGWP 378 (481)
Q Consensus 352 v~~~I~HGG~g------t~~eal~~GvP~l~~P 378 (481)
.+++++|.|-| .+++|...++|+|++-
T Consensus 74 ~gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~ 106 (566)
T PRK07282 74 LGVAVVTSGPGATNAITGIADAMSDSVPLLVFT 106 (566)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44588888844 6789999999999995
No 404
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=21.95 E-value=90 Score=29.43 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEE
Q 042731 11 ALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLL 49 (481)
Q Consensus 11 ~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~ 49 (481)
.+|-.|.+ .||+|++++..+..+.+.+ .|+.+.
T Consensus 5 ~~a~~L~~-~G~~V~l~~r~~~~~~i~~-----~Gl~i~ 37 (293)
T TIGR00745 5 LYGAYLAR-AGHDVTLLARGEQLEALNQ-----EGLRIV 37 (293)
T ss_pred HHHHHHHh-CCCcEEEEecHHHHHHHHH-----CCcEEE
Confidence 46888999 9999999997645556666 556554
No 405
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=21.73 E-value=1.3e+02 Score=30.62 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=21.5
Q ss_pred ccEEEeCCCCchHHHHHHHhCCceEEEe
Q 042731 105 PLCIITDTFLGWCKETAQEYGIFHAIFI 132 (481)
Q Consensus 105 pD~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (481)
||+||.+.+ ...+|+++|+|++.+.
T Consensus 372 ~dliig~s~---~~~~a~~~~ip~i~~~ 396 (427)
T cd01971 372 PPIIFGSSW---ERDLAKELGGKILEVS 396 (427)
T ss_pred CCEEEechH---HHHHHHHcCCCeEEEe
Confidence 999999854 7789999999998654
No 406
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=21.72 E-value=3.6e+02 Score=25.71 Aligned_cols=28 Identities=7% Similarity=-0.069 Sum_probs=22.4
Q ss_pred CccEEEeCCCCchHHHHHHHhCCceEEEec
Q 042731 104 KPLCIITDTFLGWCKETAQEYGIFHAIFIG 133 (481)
Q Consensus 104 ~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 133 (481)
+-|++|+.- ....++|..+|+|++.++.
T Consensus 254 ~a~l~I~~D--Sgp~HlAaa~g~P~i~lfg 281 (319)
T TIGR02193 254 GADAVVGVD--TGLTHLAAALDKPTVTLYG 281 (319)
T ss_pred cCCEEEeCC--ChHHHHHHHcCCCEEEEEC
Confidence 458999873 4577899999999998774
No 407
>PRK13059 putative lipid kinase; Reviewed
Probab=21.71 E-value=3.5e+02 Score=25.76 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=22.0
Q ss_pred cceeeccCchhHHHHH---H---hCCcEEecccc
Q 042731 353 SAFLSHCGWNSVLEAL---S---HGVPIIGWPLA 380 (481)
Q Consensus 353 ~~~I~HGG~gt~~eal---~---~GvP~l~~P~~ 380 (481)
+.+|.-||=||+.|++ . .++|+-++|..
T Consensus 58 d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~G 91 (295)
T PRK13059 58 KYILIAGGDGTVDNVVNAMKKLNIDLPIGILPVG 91 (295)
T ss_pred CEEEEECCccHHHHHHHHHHhcCCCCcEEEECCC
Confidence 4599999999988874 3 35899999973
No 408
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=21.71 E-value=6.6e+02 Score=24.50 Aligned_cols=33 Identities=15% Similarity=-0.119 Sum_probs=23.1
Q ss_pred CccEEEeCCC-Cc--hHHHHHHHhCCceEEEechhH
Q 042731 104 KPLCIITDTF-LG--WCKETAQEYGIFHAIFIGGGG 136 (481)
Q Consensus 104 ~pD~vI~D~~-~~--~~~~~A~~lgiP~v~~~~~~~ 136 (481)
++|+||.=.- +. .+..+|..+++|+|.+-+++.
T Consensus 78 ~~d~iiavGGGs~~D~aK~ia~~~~~p~i~VPTt~g 113 (345)
T cd08171 78 EADMIFAVGGGKAIDTVKVLADKLGKPVFTFPTIAS 113 (345)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHcCCCEEEecCccc
Confidence 8999996532 22 555666777999998877543
No 409
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=21.64 E-value=1.5e+02 Score=27.17 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=17.3
Q ss_pred HHHHHHHHhCCCCEEEEEeCC
Q 042731 10 LALARRLEETNKYTITLVNTP 30 (481)
Q Consensus 10 l~LA~~L~~~~Gh~Vt~~~~~ 30 (481)
.+||++|.+ +||+|+++...
T Consensus 30 ~aLA~~L~~-~G~~V~li~r~ 49 (229)
T PRK06732 30 KIIAETFLA-AGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHh-CCCEEEEEECc
Confidence 578999999 99999999754
No 410
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.63 E-value=3.8e+02 Score=28.39 Aligned_cols=119 Identities=10% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEE--------ecccCHHHhhcccCcccee
Q 042731 285 MQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVV--------HKWAPQVEILSHRSVSAFL 356 (481)
Q Consensus 285 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v--------~~~ip~~~ll~~~~v~~~I 356 (481)
..+++.|+..|.+.++.+.+.. .-.-+..-.+ ..++.. ..+.-...-......++++
T Consensus 8 ~~l~~~L~~~Gv~~vFgvpG~~-------------~~~l~~al~~--~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~ 72 (572)
T PRK08979 8 SMIVRSLIDEGVKHIFGYPGGS-------------VLDIYDALHE--KSGIEHILVRHEQAAVHMADGYARATGKVGVVL 72 (572)
T ss_pred HHHHHHHHHcCCCEEEEcCCcc-------------hHHHHHHHhh--cCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEE
Q ss_pred eccC------chhHHHHHHhCCcEEec-------------ccccchhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHH
Q 042731 357 SHCG------WNSVLEALSHGVPIIGW-------------PLAAEQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKI 417 (481)
Q Consensus 357 ~HGG------~gt~~eal~~GvP~l~~-------------P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i 417 (481)
+|.| .+.+++|...++|+|++ =+..||....+-+. .....+.. ..--++.|.+++
T Consensus 73 ~t~GpG~~n~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~it---k~~~~v~~---~~~~~~~l~~A~ 146 (572)
T PRK08979 73 VTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGISRPVV---KHSFLVKD---AEDIPEIIKKAF 146 (572)
T ss_pred ECCCchHhHHHHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhHHhhhce---eEEEecCC---HHHHHHHHHHHH
Q ss_pred HHHhcCC
Q 042731 418 ELVMNET 424 (481)
Q Consensus 418 ~~vl~~~ 424 (481)
+..++.+
T Consensus 147 ~~A~~~~ 153 (572)
T PRK08979 147 YIASTGR 153 (572)
T ss_pred HHHhCCC
No 411
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=21.49 E-value=2.8e+02 Score=23.93 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=32.0
Q ss_pred HHhhhhHHHHHHHHHHhhccCCCCccEEEeCCCCch---------------HHHHHHHhCCceEEEec
Q 042731 81 ASASLEPHFKKLISELVNEQNGQKPLCIITDTFLGW---------------CKETAQEYGIFHAIFIG 133 (481)
Q Consensus 81 ~~~~~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~~~---------------~~~~A~~lgiP~v~~~~ 133 (481)
.+..+.+.+.++|+.. +||.++.+..++. ...++.+.|||..-+.+
T Consensus 45 Rl~~I~~~l~~~i~~~-------~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P 105 (164)
T PRK00039 45 RLKQIYDGLSELIDEY-------QPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTP 105 (164)
T ss_pred HHHHHHHHHHHHHHHh-------CCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECH
Confidence 3445566778999999 9999988754321 12466778999887654
No 412
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=21.47 E-value=87 Score=29.07 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=22.3
Q ss_pred ccceeeccCchhHHHHHHh----CCcEEecc
Q 042731 352 VSAFLSHCGWNSVLEALSH----GVPIIGWP 378 (481)
Q Consensus 352 v~~~I~HGG~gt~~eal~~----GvP~l~~P 378 (481)
++++|+-||=||++.++.. ++|++.+-
T Consensus 26 ~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN 56 (246)
T PRK04761 26 ADVIVALGGDGFMLQTLHRYMNSGKPVYGMN 56 (246)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEe
Confidence 4469999999999988765 68998883
No 413
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=21.32 E-value=1.8e+02 Score=25.82 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=26.0
Q ss_pred CccEEEeCCCCchHHHHHHHhCCceEEEec
Q 042731 104 KPLCIITDTFLGWCKETAQEYGIFHAIFIG 133 (481)
Q Consensus 104 ~pD~vI~D~~~~~~~~~A~~lgiP~v~~~~ 133 (481)
+..+||+|.....+..-|++.|||+..+..
T Consensus 29 ~i~~Visd~~~A~~lerA~~~gIpt~~~~~ 58 (200)
T COG0299 29 EIVAVISDKADAYALERAAKAGIPTVVLDR 58 (200)
T ss_pred EEEEEEeCCCCCHHHHHHHHcCCCEEEecc
Confidence 578999998778899999999999987554
No 414
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=21.15 E-value=3.8e+02 Score=23.83 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=23.7
Q ss_pred HHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEec
Q 042731 11 ALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIP 52 (481)
Q Consensus 11 ~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~ 52 (481)
.|+++|.+ +||+|+.++............ .++++....
T Consensus 13 ~l~~~l~~-~g~~v~~~~~~~~~~~~~~~~---~~~~~~~~d 50 (236)
T PF01370_consen 13 ALVRQLLK-KGHEVIVLSRSSNSESFEEKK---LNVEFVIGD 50 (236)
T ss_dssp HHHHHHHH-TTTEEEEEESCSTGGHHHHHH---TTEEEEESE
T ss_pred HHHHHHHH-cCCcccccccccccccccccc---ceEEEEEee
Confidence 57899999 999988777655444332210 245555444
No 415
>PRK14071 6-phosphofructokinase; Provisional
Probab=21.11 E-value=95 Score=30.69 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=28.9
Q ss_pred hhcccCccceeeccCchhHHHHHH----hCCcEEecccccc
Q 042731 346 ILSHRSVSAFLSHCGWNSVLEALS----HGVPIIGWPLAAE 382 (481)
Q Consensus 346 ll~~~~v~~~I~HGG~gt~~eal~----~GvP~l~~P~~~D 382 (481)
.|..-+++++|.=||.+|+.-+.. .|+|+|++|-.-|
T Consensus 102 ~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTID 142 (360)
T PRK14071 102 GYHSLGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTID 142 (360)
T ss_pred HHHHcCCCEEEEECChhHHHHHHHHHHhcCCcEEEeccccc
Confidence 455567889999999999865543 4999999998544
No 416
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=21.10 E-value=74 Score=29.45 Aligned_cols=22 Identities=9% Similarity=0.167 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCc
Q 042731 9 FLALARRLEETNKYTITLVNTPL 31 (481)
Q Consensus 9 ~l~LA~~L~~~~Gh~Vt~~~~~~ 31 (481)
.-.|+++|++ .||+|+++++..
T Consensus 22 ~~~L~kaL~~-~G~~V~Vi~P~y 43 (245)
T PF08323_consen 22 VGSLPKALAK-QGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHH-TT-EEEEEEE-T
T ss_pred HHHHHHHHHh-cCCeEEEEEccc
Confidence 3468999999 999999999754
No 417
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=21.08 E-value=1.5e+02 Score=24.63 Aligned_cols=50 Identities=12% Similarity=0.138 Sum_probs=34.2
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEec
Q 042731 1 MAQGHIIPFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIP 52 (481)
Q Consensus 1 p~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~ 52 (481)
++-+|-....-++..|++ +|++|++.+.....+.+.+.... .+.+++.+.
T Consensus 12 ~gD~H~lG~~iv~~~lr~-~G~eVi~LG~~vp~e~i~~~a~~-~~~d~V~lS 61 (137)
T PRK02261 12 GADCHAVGNKILDRALTE-AGFEVINLGVMTSQEEFIDAAIE-TDADAILVS 61 (137)
T ss_pred CCChhHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEc
Confidence 356799999999999999 99999999976544433332110 445555555
No 418
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=21.08 E-value=3e+02 Score=26.09 Aligned_cols=105 Identities=19% Similarity=0.210 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeeccCc
Q 042731 282 SQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSHCGW 361 (481)
Q Consensus 282 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~HGG~ 361 (481)
+.-..+++.++..+..+++..+.. .-+++.+....+ .+-+=+ ||+. .=...|.
T Consensus 147 ~~e~~~~~~l~~~~~Dlivlagym------------~il~~~~l~~~~--~~iINi-----------HpSL--LP~f~G~ 199 (280)
T TIGR00655 147 EHEKRQLELLKQYQVDLVVLAKYM------------QILSPDFVKRYP--NKIINI-----------HHSF--LPAFIGA 199 (280)
T ss_pred hhHHHHHHHHHHhCCCEEEEeCch------------hhCCHHHHhhcc--CCEEEe-----------cCCc--CCCCCCc
Confidence 334557777888888888888776 237777766544 222222 4443 3335688
Q ss_pred hhHHHHHHhCCcEEeccccc--chhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHH
Q 042731 362 NSVLEALSHGVPIIGWPLAA--EQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELV 420 (481)
Q Consensus 362 gt~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~v 420 (481)
+.+..|+..|+...++-.+. +....+..+.+. -+.+. ...|.+.|.+++.++
T Consensus 200 ~p~~~ai~~G~k~tG~TvH~V~e~lD~GpII~Q~---~v~I~----~~dt~~~L~~ri~~~ 253 (280)
T TIGR00655 200 NPYQRAYERGVKIIGATAHYVTEELDEGPIIEQD---VVRVD----HTDNVEDLIRAGRDI 253 (280)
T ss_pred CHHHHHHHcCCCeEEEEEEEEcCCCcCCCeEEEE---EEEcC----CCCCHHHHHHHHHHH
Confidence 99999999999998887543 222333333322 22332 356888888888765
No 419
>PLN02891 IMP cyclohydrolase
Probab=21.08 E-value=2.6e+02 Score=29.02 Aligned_cols=37 Identities=27% Similarity=0.352 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCcchhhhhhcCCCCCCeEEEEec
Q 042731 8 PFLALARRLEETNKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIP 52 (481)
Q Consensus 8 P~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~ 52 (481)
-++.+|+.|.+ .|.++ +++.-..+.+++ .|+.+..+.
T Consensus 34 gi~~fAk~L~~-~gveI--iSTgGTak~L~e-----~Gi~v~~Vs 70 (547)
T PLN02891 34 DLALLANGLQE-LGYTI--VSTGGTASALEA-----AGVSVTKVE 70 (547)
T ss_pred CHHHHHHHHHH-CCCEE--EEcchHHHHHHH-----cCCceeeHH
Confidence 46789999999 88775 566666778888 666676665
No 420
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=21.07 E-value=5.2e+02 Score=25.48 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhcCCceEEEEcCC
Q 042731 281 ASQMMQLAMALEASGKNFIWVVRPP 305 (481)
Q Consensus 281 ~~~~~~~~~al~~~~~~~i~~~~~~ 305 (481)
+.++..++.+|.+.|+.+.+.+...
T Consensus 10 p~~~~~la~~L~~~G~~v~~~~~~~ 34 (396)
T cd03818 10 PGQFRHLAPALAAQGHEVVFLTEPN 34 (396)
T ss_pred chhHHHHHHHHHHCCCEEEEEecCC
Confidence 4667889999999999988877665
No 421
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=21.00 E-value=1.2e+02 Score=27.40 Aligned_cols=43 Identities=21% Similarity=0.194 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHhhccCCCCccEEEeCCC-------CchHHHHHHHhCCceEEEe
Q 042731 85 LEPHFKKLISELVNEQNGQKPLCIITDTF-------LGWCKETAQEYGIFHAIFI 132 (481)
Q Consensus 85 ~~~~~~~ll~~~~~~~~~~~pD~vI~D~~-------~~~~~~~A~~lgiP~v~~~ 132 (481)
..+.+.++++++.. +||+|+.|.+ +..|..++-.+++|+|-+.
T Consensus 75 E~P~~l~~l~~l~~-----~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVA 124 (206)
T PF04493_consen 75 ELPCILEALEKLKN-----KPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVA 124 (206)
T ss_dssp THHHHHHHHHTSSS-------SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEE
T ss_pred hHHHHHHHHHHhcc-----cCCEEEEeCceeecCCCcChhheeeeccCCCEEEEe
Confidence 34566777777743 7899999953 2356688888999999755
No 422
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=20.75 E-value=3.7e+02 Score=24.69 Aligned_cols=29 Identities=10% Similarity=0.184 Sum_probs=24.0
Q ss_pred CCCChHHHHHHHHHHHhCCCCEEEEEeCCc
Q 042731 2 AQGHIIPFLALARRLEETNKYTITLVNTPL 31 (481)
Q Consensus 2 ~~GHv~P~l~LA~~L~~~~Gh~Vt~~~~~~ 31 (481)
+-|-..-...|+-.|+. +|+.|.++-..-
T Consensus 13 GVGKTTttAnig~aLA~-~GkKv~liD~Di 41 (272)
T COG2894 13 GVGKTTTTANIGTALAQ-LGKKVVLIDFDI 41 (272)
T ss_pred CcCccchhHHHHHHHHH-cCCeEEEEecCc
Confidence 34666777899999999 999999998764
No 423
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=20.61 E-value=4.6e+02 Score=26.24 Aligned_cols=10 Identities=30% Similarity=0.693 Sum_probs=8.5
Q ss_pred CCcEEecccc
Q 042731 371 GVPIIGWPLA 380 (481)
Q Consensus 371 GvP~l~~P~~ 380 (481)
.+|++.+|..
T Consensus 148 ~~P~iaIPTt 157 (395)
T PRK15454 148 RLPLIAIPTT 157 (395)
T ss_pred CCCEEEECCC
Confidence 5799999984
No 424
>PRK07064 hypothetical protein; Provisional
Probab=20.60 E-value=5.1e+02 Score=27.12 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=21.6
Q ss_pred ccceeeccCch------hHHHHHHhCCcEEecc
Q 042731 352 VSAFLSHCGWN------SVLEALSHGVPIIGWP 378 (481)
Q Consensus 352 v~~~I~HGG~g------t~~eal~~GvP~l~~P 378 (481)
.+++++|.|-| .+++|...++|+|++-
T Consensus 67 ~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~ 99 (544)
T PRK07064 67 LGVALTSTGTGAGNAAGALVEALTAGTPLLHIT 99 (544)
T ss_pred CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 44588888844 7789999999999884
No 425
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=20.58 E-value=93 Score=29.57 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=42.6
Q ss_pred cCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCcchhhhcCCCchhHHHHhccCCCcEEEecccCHHHhhcccCccceeec
Q 042731 279 IAASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFKANKWLPRGFEERIKCSGQGLVVHKWAPQVEILSHRSVSAFLSH 358 (481)
Q Consensus 279 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ip~~~ll~~~~v~~~I~H 358 (481)
.+.+....+.++++....+.||.++++. .-..+.++++...+-.+|.. ||-.
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGGy--------------------------g~~rlL~~ld~~~i~~~pK~--~iGy 97 (284)
T PF02016_consen 46 SDEERAEDLNEAFADPEIDAIWCARGGY--------------------------GANRLLPYLDYDAIRKNPKI--FIGY 97 (284)
T ss_dssp -HHHHHHHHHHHHHSTTEEEEEES--SS---------------------------GGGGGGGCHHHHHHHSG-E--EEE-
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEeeccc--------------------------cHHHHHhcccccccccCCCE--EEEe
Confidence 4567788899999999999999988762 11113355666666666554 6666
Q ss_pred cCchhHHHHHHh--CCcEEeccc
Q 042731 359 CGWNSVLEALSH--GVPIIGWPL 379 (481)
Q Consensus 359 GG~gt~~eal~~--GvP~l~~P~ 379 (481)
.-..++.-+++. |.+.+--|.
T Consensus 98 SDiTaL~~al~~~~g~~t~hGp~ 120 (284)
T PF02016_consen 98 SDITALHNALYAKTGLVTFHGPM 120 (284)
T ss_dssp GGGHHHHHHHHHHHTBEEEES--
T ss_pred cchHHHHHHHHHhCCCeEEEcch
Confidence 665555555433 556555555
No 426
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=20.55 E-value=2.5e+02 Score=23.36 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=29.6
Q ss_pred CCeEEEEEcccccccCHHHHHHHHHHHHhcCCceEEEEcC
Q 042731 265 YTSVLYVSFGSQNTIAASQMMQLAMALEASGKNFIWVVRP 304 (481)
Q Consensus 265 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 304 (481)
...+|++++||-.....+.+.++++.+. .+.+++++...
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 4568999999987767788888888874 45677776543
No 427
>PTZ00119 40S ribosomal protein S15; Provisional
Probab=20.54 E-value=3.6e+02 Score=25.32 Aligned_cols=81 Identities=11% Similarity=-0.075 Sum_probs=49.4
Q ss_pred chhhhHHHHHHHhcceEEeeccCCcccCHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHHHHHhhcccCCCCchHHHH
Q 042731 382 EQFYNSKLLEEEMGVCVEIARGMSCEVLKEDLSAKIELVMN--ETEKGTDLRNKANEVKVIIKNAVRNETNFKGSSVKAM 459 (481)
Q Consensus 382 DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~~i~~vl~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~gs~~~~~ 459 (481)
+..+-+.|+. . --|..... ...+-+.+.+.|.++|+ |.+..+..+++-+++-+.++..- .+-||+...+
T Consensus 61 e~~fl~er~~-i-p~gY~~~~---~~e~le~~~p~VkRILsLrNAs~kEi~K~rK~eIIkkfqr~~----~DTGS~EVQI 131 (302)
T PTZ00119 61 ERDFLSERNQ-I-PNGYIGLW---QYDDIKHLRKNIINMLHLNCANSKQIHKYKKLCIRRCLQRRP----FDTGSAPVQI 131 (302)
T ss_pred HHHHHHHhcc-C-Cccceecc---cccchhhhCHHHHHHhccccCChHHHHHHHHHHHHHHhcCCC----CCCCCHHHHH
Confidence 4455555544 3 45555555 55567788899999974 44334445555555555555332 6677788887
Q ss_pred HHHHHHHHhhhh
Q 042731 460 DQFLNAALIMRQ 471 (481)
Q Consensus 460 ~~~~~~~~~~~~ 471 (481)
+-+=+.+...+.
T Consensus 132 AiLTeRI~~LTe 143 (302)
T PTZ00119 132 GCLTEKILNLRA 143 (302)
T ss_pred HHHHHHHHHHHH
Confidence 777666666654
No 428
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=20.54 E-value=1.2e+02 Score=26.63 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=24.2
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCcchhhhh
Q 042731 9 FLALARRLEETNKYTITLVNTPLNLKKLK 37 (481)
Q Consensus 9 ~l~LA~~L~~~~Gh~Vt~~~~~~~~~~i~ 37 (481)
...|.+.|++ .|++|.++.++...+++.
T Consensus 15 a~~lir~L~~-~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 15 GIRLLEVLKE-AGVEVHLVISDWAKETIK 42 (181)
T ss_pred HHHHHHHHHH-CCCEEEEEECccHHHHHH
Confidence 4678999999 999999999998877765
No 429
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=20.53 E-value=4.1e+02 Score=24.50 Aligned_cols=81 Identities=19% Similarity=0.102 Sum_probs=46.7
Q ss_pred CCCEEEEEeCCcchhhhhhcCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhhhhHHHHHHHHHHhhc
Q 042731 20 NKYTITLVNTPLNLKKLKSSLPQNSSIHLLEIPFNSVEHDLPPCTENTDSIPYHLFPKFLQASASLEPHFKKLISELVNE 99 (481)
Q Consensus 20 ~Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 99 (481)
......++.++.+.-+... -|++...+-.. .++ ..+. ......+.+.+++.
T Consensus 148 ~~~~~~v~~h~~~~Y~~~~-----~gl~~~~~~~~------~~~-----~~ps----------~~~l~~l~~~ik~~--- 198 (256)
T PF01297_consen 148 LPGRPVVVYHDAFQYFAKR-----YGLKVIGVIEI------SPG-----EEPS----------PKDLAELIKLIKEN--- 198 (256)
T ss_dssp SSGGEEEEEESTTHHHHHH-----TT-EEEEEESS------SSS-----SSS-----------HHHHHHHHHHHHHT---
T ss_pred ccCCeEEEEChHHHHHHHh-----cCCceeeeecc------ccc-----cCCC----------HHHHHHHHHHhhhc---
Confidence 3445667777888777777 55665544311 110 0000 12333445666666
Q ss_pred cCCCCccEEEeCCCCc--hHHHHHHHhCCceEEEec
Q 042731 100 QNGQKPLCIITDTFLG--WCKETAQEYGIFHAIFIG 133 (481)
Q Consensus 100 ~~~~~pD~vI~D~~~~--~~~~~A~~lgiP~v~~~~ 133 (481)
+..+|+++.... .+..+|+++|+|.+.+.+
T Consensus 199 ----~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~ 230 (256)
T PF01297_consen 199 ----KVKCIFTEPQFSSKLAEALAKETGVKVVYLDP 230 (256)
T ss_dssp ----T-SEEEEETTS-THHHHHHHHCCT-EEEESST
T ss_pred ----CCcEEEecCCCChHHHHHHHHHcCCcEEEeCC
Confidence 899999997665 456889999999987554
No 430
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=20.52 E-value=3.5e+02 Score=23.52 Aligned_cols=42 Identities=14% Similarity=-0.040 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHhhccCCCCccEEEeCCCC-chHHHHHHHhCCceEEEec
Q 042731 85 LEPHFKKLISELVNEQNGQKPLCIITDTFL-GWCKETAQEYGIFHAIFIG 133 (481)
Q Consensus 85 ~~~~~~~ll~~~~~~~~~~~pD~vI~D~~~-~~~~~~A~~lgiP~v~~~~ 133 (481)
..+.+.+.++++ +||++|+-.+. .....+-......++-+.+
T Consensus 67 ~~~~~~~~l~~~-------~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHp 109 (181)
T PF00551_consen 67 NDEELLELLESL-------NPDLIVVAGYGRILPKEFLSIPPYGIINIHP 109 (181)
T ss_dssp HHHHHHHHHHHT-------T-SEEEESS-SS---HHHHHHSTTSEEEEES
T ss_pred hhhHHHHHHHhh-------ccceeehhhhHHHhhhhhhhcccccEEEEee
Confidence 344567888888 99999887653 3444555666777776655
No 431
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.37 E-value=2.6e+02 Score=29.62 Aligned_cols=27 Identities=15% Similarity=0.322 Sum_probs=20.9
Q ss_pred ccceeeccCch------hHHHHHHhCCcEEecc
Q 042731 352 VSAFLSHCGWN------SVLEALSHGVPIIGWP 378 (481)
Q Consensus 352 v~~~I~HGG~g------t~~eal~~GvP~l~~P 378 (481)
.+++++|.|-| .+++|...++|+|++-
T Consensus 78 ~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~ 110 (570)
T PRK06725 78 VGVVFATSGPGATNLVTGLADAYMDSIPLVVIT 110 (570)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCcCEEEEe
Confidence 34477777744 5779999999999984
No 432
>PRK03202 6-phosphofructokinase; Provisional
Probab=20.35 E-value=1e+02 Score=29.97 Aligned_cols=37 Identities=30% Similarity=0.467 Sum_probs=29.6
Q ss_pred hhcccCccceeeccCchhHHHHHH---hCCcEEecccccc
Q 042731 346 ILSHRSVSAFLSHCGWNSVLEALS---HGVPIIGWPLAAE 382 (481)
Q Consensus 346 ll~~~~v~~~I~HGG~gt~~eal~---~GvP~l~~P~~~D 382 (481)
-|..-+++++|.=||.+|+.-|.. +++|+|++|-.-|
T Consensus 88 ~l~~~~Id~Li~IGGd~s~~~a~~L~e~~i~vigiPkTID 127 (320)
T PRK03202 88 NLKKLGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPGTID 127 (320)
T ss_pred HHHHcCCCEEEEeCChHHHHHHHHHHhcCCcEEEeccccc
Confidence 344557888999999999877755 5999999998654
No 433
>PRK07206 hypothetical protein; Provisional
Probab=20.29 E-value=2.5e+02 Score=28.15 Aligned_cols=23 Identities=13% Similarity=-0.025 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCC
Q 042731 7 IPFLALARRLEETNKYTITLVNTP 30 (481)
Q Consensus 7 ~P~l~LA~~L~~~~Gh~Vt~~~~~ 30 (481)
.....+++++++ .|+++++++..
T Consensus 12 ~~~~~~~~a~~~-~G~~~v~v~~~ 34 (416)
T PRK07206 12 SSGKFLAPAFKK-RGIEPIAVTSS 34 (416)
T ss_pred chHHHHHHHHHH-cCCeEEEEEcC
Confidence 334678999999 99999888865
No 434
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=20.17 E-value=1.3e+02 Score=21.43 Aligned_cols=20 Identities=30% Similarity=0.384 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCCEEEEEeCC
Q 042731 10 LALARRLEETNKYTITLVNTP 30 (481)
Q Consensus 10 l~LA~~L~~~~Gh~Vt~~~~~ 30 (481)
|..|..|++ +|++|+++=..
T Consensus 9 l~aA~~L~~-~g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAK-AGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHH-TTSEEEEEESS
T ss_pred HHHHHHHHH-CCCcEEEEecC
Confidence 677899999 89999998644
No 435
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=20.10 E-value=1.8e+02 Score=30.87 Aligned_cols=38 Identities=8% Similarity=-0.189 Sum_probs=26.7
Q ss_pred cEEEeC---CCCchHHHHHHHhCCceEEEechhHHHHHHHH
Q 042731 106 LCIITD---TFLGWCKETAQEYGIFHAIFIGGGGFGFACLY 143 (481)
Q Consensus 106 D~vI~D---~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 143 (481)
.-||+. .+...+....++..++..+++++.++....+.
T Consensus 143 ~~ViaHfHEWmaG~gll~lr~~~~~VaTvFTTHAT~lGR~l 183 (633)
T PF05693_consen 143 PKVIAHFHEWMAGVGLLYLRKRKPDVATVFTTHATLLGRYL 183 (633)
T ss_dssp EEEEEEEESGGGTTHHHHHHHTT-SCEEEEEESS-HHHHHH
T ss_pred CcEEEEechHhHhHHHHHHhccCCCeeEEEEecccchhhHh
Confidence 444444 44457788899999999999999988877665
Done!