BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042733
(531 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 36/165 (21%)
Query: 56 GAGKTTLMDVLAG--------------RKPGGYITRNITVS-GYPEKQETFARI---LGY 97
G+GK+TL+ ++AG RK G I RNI ++ YPE Q R+ + +
Sbjct: 43 GSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAF 102
Query: 98 CEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELN--------PFRQALFEQRKRLTVAVE 149
+N + D + +++ ME V L+ PF + E+R R+ +A
Sbjct: 103 AVKN-FYPDRDPVP--------LVKKAMEFVGLDFDSFKDRVPFFLSGGEKR-RVAIASV 152
Query: 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQ 194
V P I+ DEP+ GLD T ++R+V +G+TV+ H
Sbjct: 153 IVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 36/165 (21%)
Query: 56 GAGKTTLMDVLAG--------------RKPGGYITRNITVS-GYPEKQETFARI---LGY 97
G+GK+TL+ ++AG RK G I RNI ++ YPE Q R+ + +
Sbjct: 45 GSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAF 104
Query: 98 CEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELN--------PFRQALFEQRKRLTVAVE 149
+N + D + +++ ME V L+ PF + E+R R+ +A
Sbjct: 105 AVKN-FYPDRDPVP--------LVKKAMEFVGLDFDSFKDRVPFFLSGGEKR-RVAIASV 154
Query: 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQ 194
V P I+ DEP+ GLD T ++R+V +G+TV+ H
Sbjct: 155 IVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 199
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 112/257 (43%), Gaps = 30/257 (11%)
Query: 50 GAFRPGGAGKTTLMDVLAGRK-PGG----YITRNITVSGY----PEKQ------ETFARI 94
G P GAGKTT M ++AG P + R + +G PE + +T+A
Sbjct: 35 GILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94
Query: 95 LGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVE----LNPF-RQALFEQRKRLTVAVE 149
+I P + + +EE ++++ LN F R+ Q++R+ +A
Sbjct: 95 PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARA 154
Query: 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFL 208
V +PS++ DEP S LDAR + +V+ +G T++ H P+ DIF D + +
Sbjct: 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGV 213
Query: 209 LKQVGQEISVGPL-----GPSSIHLISYFEKIFGVSK--IKDGYNLATWLLEVTALSQER 261
L + G+ + VG P SI + S +I + +G + + V+ S
Sbjct: 214 LVK-GKLVQVGKPEDLYDNPVSIQVASLIGEINELEGKVTNEGVVIGSLRFPVSVSSDRA 272
Query: 262 AFGVDFSDIYRNSELYK 278
G+ D+ + ++ K
Sbjct: 273 IIGIRPEDVKLSKDVIK 289
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 112/257 (43%), Gaps = 30/257 (11%)
Query: 50 GAFRPGGAGKTTLMDVLAGRK-PGG----YITRNITVSGY----PEKQ------ETFARI 94
G P GAGKTT M ++AG P + R + +G PE + +T+A
Sbjct: 35 GILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94
Query: 95 LGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVE----LNPF-RQALFEQRKRLTVAVE 149
+I P + + +EE ++++ LN F R+ Q++R+ +A
Sbjct: 95 PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARA 154
Query: 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFL 208
V +PS++ DEP S LDAR + +V+ +G T++ H P+ DIF D + +
Sbjct: 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGV 213
Query: 209 LKQVGQEISVGPL-----GPSSIHLISYFEKIFGVSK--IKDGYNLATWLLEVTALSQER 261
L + G+ + VG P SI + S +I + +G + + V+ S
Sbjct: 214 LVK-GKLVQVGKPEDLYDNPVSIQVASLIGEINELEGKVTNEGVVIGSLRFPVSVSSDRA 272
Query: 262 AFGVDFSDIYRNSELYK 278
G+ D+ + ++ K
Sbjct: 273 IIGIRPEDVKLSKDVIK 289
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 124 GMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR-MVRNTV 182
G+E ++ P F Q+KR+ +A V P ++ DEP +GLD + +++ +V
Sbjct: 132 GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQK 191
Query: 183 DMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211
++G T++ H I Y D +F++K+
Sbjct: 192 ELGITIIIATHDIDIVPLYC-DNVFVMKE 219
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQ 194
Q++R+++A P ++ DEP S LD V+R+++ + G+T+V H+
Sbjct: 158 QQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSI-- 197
Q++R+ +A V NP I+ DE S LD + V++ + GRT + H+ S
Sbjct: 531 QKQRIAIARALVRNPKILLLDEATSALDTE-SEAVVQAALDKAREGRTTIVIAHRLSTVR 589
Query: 198 --DIFYSFDELFLLKQ 211
D+ FD +++Q
Sbjct: 590 NADVIAGFDGGVIVEQ 605
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 36/164 (21%)
Query: 56 GAGKTTLMDVLAG--------------------RKPGGYITRNITVSGYPEKQETFARIL 95
G+GKTTL+ +LAG RK GY+ +N P Q I+
Sbjct: 47 GSGKTTLLKILAGLLAAAGEIFLDGSPADPFLLRKNVGYVFQN------PSSQ-----II 95
Query: 96 GYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQA-----LFEQRKRLTVAVEF 150
G + D+ + + + I++ +ELV L+ A Q++RL +A
Sbjct: 96 GATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASML 155
Query: 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQ 194
+ ++ DEP+S LD + + +++ + + G+ ++ H+
Sbjct: 156 ARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHE 199
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSI-- 197
Q++R+ +A V NP I+ DE S LD + V++ + GRT + H+ S
Sbjct: 531 QKQRIAIARALVRNPKILLLDEATSALDTE-SEAVVQAALDKAREGRTTIVIAHRLSTVR 589
Query: 198 --DIFYSFDELFLLKQ 211
D+ FD +++Q
Sbjct: 590 NADVIAGFDGGVIVEQ 605
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRN-TVDMGRTVVCTIHQPSID 198
Q++R+ +A NP II DEP LD++ + ++++ + G+TVV H ++
Sbjct: 150 QQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVA 209
Query: 199 IF 200
F
Sbjct: 210 RF 211
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196
QR+RL +A F+ NP I+ DE + LD+ + + V + + +++ GRT + H+ S
Sbjct: 144 QRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL-DSLMKGRTTLVIAHRLS 199
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 84/194 (43%), Gaps = 34/194 (17%)
Query: 54 PGGAGKTTLMDVLAGRKPGGYITRNITVSG---------------YPEKQETFARILGYC 98
P G+GKTTL+ ++G P + NI ++G PE E +
Sbjct: 38 PNGSGKTTLLRAISGLLP---YSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTV---- 90
Query: 99 EQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFE----QRKRLTVAVEFVANP 154
NDI ++ L L++ + + ++L E R+ L++ Q + ++ + P
Sbjct: 91 --NDIVYLYEELKGLDRDLFLEMLKALKLGE-EILRRKLYKLSAGQSVLVRTSLALASQP 147
Query: 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQ-PSIDIFYSFDELFLL-KQV 212
I+ DEP +DA + R ++ + G+ + H+ ++++ + FL+ ++
Sbjct: 148 EIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTHELDMLNLYKEYKAYFLVGNRL 204
Query: 213 GQEISVGPLGPSSI 226
ISV L SSI
Sbjct: 205 QGPISVSELLESSI 218
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVR--NTVDMGRTVVCTIHQPSI 197
Q++R+ +A NP II D+P LD++ ++++++ N D G+TVV H ++
Sbjct: 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEED-GKTVVVVTHDINV 208
Query: 198 DIF 200
F
Sbjct: 209 ARF 211
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196
QR+R+ +A V NP I+ DE S LD + ++R + + + GRTV+ H+ S
Sbjct: 146 QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGRTVIIIAHRLS 201
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196
QR+R+ +A V NP I+ DE S LD + ++R + + + GRTV+ H+ S
Sbjct: 146 QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGRTVIIIAHRLS 201
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196
QR+R+ +A V NP I+ DE S LD + ++R + + + GRTV+ H+ S
Sbjct: 144 QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGRTVIIIAHRLS 199
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196
QR+R+ +A V NP I+ DE S LD + ++R + + + GRTV+ H+ S
Sbjct: 150 QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGRTVIIIAHRLS 205
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTV-IRMVRNTVDMGRTVVCTIHQPSID 198
QR+R+ + VA PS+ DEP+S LDA + I + R +GRT++ H ++
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVE 196
Query: 199 IFYSFDELFLLK-----QVGQEISV 218
D++ +L QVG+ + +
Sbjct: 197 AMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTV-IRMVRNTVDMGRTVVCTIHQPSID 198
QR+R+ + VA PS+ DEP+S LDA + I + R +GRT++ H ++
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVE 196
Query: 199 IFYSFDELFLLK-----QVGQEISV 218
D++ +L QVG+ + +
Sbjct: 197 AMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 24/143 (16%)
Query: 54 PGGAGKTTLMDVLAG---RKPGGYITRNITVSGY-PEKQETFARILGYCEQNDIHSPH-- 107
P GAGKT ++++AG G + V+ PEK + + + QN PH
Sbjct: 34 PTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHD-----IAFVYQNYSLFPHMN 88
Query: 108 -----------DTLYDFTHCLYMFIEEGME-LVELNPFRQALFEQRKRLTVAVEFVANPS 155
+ D L + +E L++ NP + EQ +R+ +A V NP
Sbjct: 89 VKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQ-QRVALARALVTNPK 147
Query: 156 IISRDEPISGLDARAATTVIRMV 178
I+ DEP+S LD R M+
Sbjct: 148 ILLLDEPLSALDPRTQENAREML 170
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 74/200 (37%), Gaps = 56/200 (28%)
Query: 43 GDLNSLSGAFRPGGAGKTTLMDVLAG----------------------RKPGGYITRNIT 80
GD+ ++ G G GK+TL+D+L G P Y +I
Sbjct: 31 GDILAVLGQ---NGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIV 87
Query: 81 VSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFE- 139
+ G TFA+ HD Y + ++ + L + F
Sbjct: 88 LMGRSTHINTFAK----------PKSHD---------YQVAMQALDYLNLTHLAKREFTS 128
Query: 140 ----QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGR----TVVCT 191
QR+ + +A + +I DEP S LD V+ ++ +D+ + TVV T
Sbjct: 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLL---IDLAQSQNMTVVFT 185
Query: 192 IHQPSIDIFYSFDELFLLKQ 211
HQP+ + + L L KQ
Sbjct: 186 THQPNQVVAIANKTLLLNKQ 205
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDI 199
Q++R+ +A V NP I+ DE S LDA + +++ + GRT + H+ S
Sbjct: 559 QKQRIAIARALVRNPKILLLDEATSALDAESE-GIVQQALDKAAKGRTTIIIAHRLST-- 615
Query: 200 FYSFDELFLLKQVGQEISVG 219
+L + + GQ + VG
Sbjct: 616 -IRNADLIISCKNGQVVEVG 634
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVR--NTVDMGRTVVCTIHQPSI 197
Q++R+ +A NP II D+P LD++ ++++++ N D G+TVV H ++
Sbjct: 150 QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEED-GKTVVVVTHDINV 208
Query: 198 DIF 200
F
Sbjct: 209 ARF 211
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196
Q++R+ +A + NP I+ DE S LDA V + +D GRTV+ H+ S
Sbjct: 488 QKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS 543
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196
QR+R+ +A V NP I+ D+ S LD + ++R + + + GRTV+ H+ S
Sbjct: 150 QRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNM-HKICKGRTVIIIAHRLS 205
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTV-IRMVRNTVDMGRTVVCTIHQPSID 198
QR+R+ + VA PS+ D+P+S LDA + I + R +GRT++ H ++
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVE 196
Query: 199 IFYSFDELFLLK-----QVGQEISV 218
D++ +L QVG+ + +
Sbjct: 197 AMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196
Q++R+ +A + NP I+ DE S LDA V + +D GRTV+ H S
Sbjct: 519 QKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHHLS 574
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 26/194 (13%)
Query: 54 PGGAGKTTLMDVLAG-RKP--GGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTL 110
P G GKTT + ++AG +P G + V+ P K + + Q+ PH T+
Sbjct: 46 PSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF----QSYAVWPHMTV 101
Query: 111 YD---FTHCLYMFIEEGM--------ELVELNPF-----RQALFEQRKRLTVAVEFVANP 154
Y+ F + F ++ + EL+++ Q QR+R+ VA V P
Sbjct: 102 YENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEP 161
Query: 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214
++ DEP+S LDA+ + ++ + + ++ D + ++ + GQ
Sbjct: 162 DVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNR-GQ 220
Query: 215 EISVGPLGPSSIHL 228
+ +G P+ ++L
Sbjct: 221 LLQIG--SPTEVYL 232
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 26/194 (13%)
Query: 54 PGGAGKTTLMDVLAG-RKP--GGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTL 110
P G GKTT + ++AG +P G + V+ P K + + Q+ PH T+
Sbjct: 45 PSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF----QSYAVWPHMTV 100
Query: 111 YD---FTHCLYMFIEEGM--------ELVELNPF-----RQALFEQRKRLTVAVEFVANP 154
Y+ F + F ++ + EL+++ Q QR+R+ VA V P
Sbjct: 101 YENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEP 160
Query: 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214
++ DEP+S LDA+ + ++ + + ++ D + ++ + GQ
Sbjct: 161 DVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNR-GQ 219
Query: 215 EISVGPLGPSSIHL 228
+ +G P+ ++L
Sbjct: 220 LLQIG--SPTEVYL 231
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQ 194
Q +R+ +A P I+ DEP S LD V+ +++ + G T+V H+
Sbjct: 143 QAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 197
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQ 194
Q +R+ +A P I+ DEP S LD V+ +++ + G T+V H+
Sbjct: 164 QAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 218
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 23/134 (17%)
Query: 54 PGGAGKTTLMDVLAG-RKP--GGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTL 110
P G GKTT + +LAG KP G ++ V+ P K R +G QN PH T+
Sbjct: 37 PSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK----YREVGMVFQNYALYPHMTV 92
Query: 111 YD---FTHCLYMFIEEGMELVELNPFRQALFE-------------QRKRLTVAVEFVANP 154
++ F ++ +E + R+ L + Q++R+ +A V P
Sbjct: 93 FENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQP 152
Query: 155 SIISRDEPISGLDA 168
++ DEP+S LDA
Sbjct: 153 KVLLFDEPLSNLDA 166
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 80/189 (42%), Gaps = 32/189 (16%)
Query: 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAG-RKP--GGYITRNITVS 82
++ +LN I + + G+ +L G P G+GK+TL+ +AG KP G V+
Sbjct: 15 NFTALNNINLKI---KDGEFMALLG---PSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVT 68
Query: 83 GYPEKQETFARILGYCEQNDIHSPHDTLYD---FTHCLYMFIEEGME------------- 126
P K R +G QN PH T+Y F L E ++
Sbjct: 69 ELPPKD----RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID 124
Query: 127 -LVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTV-IRMVRNTVDM 184
L+ P+ Q Q++R+ +A V P ++ DEP+S LDA V + R ++
Sbjct: 125 KLLNRYPW-QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKEL 183
Query: 185 GRTVVCTIH 193
G T V H
Sbjct: 184 GITTVYVTH 192
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 142 KRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFY 201
++L +A + NP + DEP SGLD A V ++++ G T++ + H +++ +
Sbjct: 153 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN-MLEVEF 211
Query: 202 SFDELFLL 209
D + L+
Sbjct: 212 LCDRIALI 219
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 21/137 (15%)
Query: 54 PGGAGKTTLMDVLAG-RKPG-GYITRNITVSGYPEKQ---ETFARILGYCEQNDIHSPHD 108
P G GKTT + ++AG +P G I + PEK R + Q+ PH
Sbjct: 37 PSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHM 96
Query: 109 TLYD---FTHCLYMF--------IEEGMELVELNPF-----RQALFEQRKRLTVAVEFVA 152
T+YD F L + E EL+ L R+ QR+R+ + V
Sbjct: 97 TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR 156
Query: 153 NPSIISRDEPISGLDAR 169
P + DEP+S LDA+
Sbjct: 157 KPQVFLMDEPLSNLDAK 173
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVC 190
QR+R+ +A V NP I+ DE S LD + ++R + + + GRTV+
Sbjct: 144 QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGRTVII 193
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVC 190
QR+R+ +A V NP I+ DE S LD + ++R + + + GRTV+
Sbjct: 150 QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGRTVII 199
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 29/141 (20%)
Query: 54 PGGAGKTTLMDVLAG-RKPGG---YITRNITVSG-----YPEKQETFARILGYCEQNDIH 104
P G GKTT + +AG +P YI N+ P K+ A + Q+
Sbjct: 40 PSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXVF----QSYAL 95
Query: 105 SPHDTLYD---FTHCLYMF-----------IEEGMELVEL--NPFRQALFEQRKRLTVAV 148
PH T+YD F L + E + L EL R+ QR+R+ +
Sbjct: 96 YPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKPRELSGGQRQRVALGR 155
Query: 149 EFVANPSIISRDEPISGLDAR 169
+ P + DEP+S LDA+
Sbjct: 156 AIIRRPKVFLXDEPLSNLDAK 176
>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|E Chain E, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|F Chain F, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|G Chain G, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|H Chain H, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
Length = 405
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 15/132 (11%)
Query: 104 HSPHDTLYDFTHCLYMFIEE--------GMELVELNPFR------QALFEQ-RKRLTVAV 148
H P D L + LY E+ ++ E N F A EQ RKR V V
Sbjct: 16 HLPPDELKEVKRILYGVEEDQTLELPTSAKDIAEQNGFDIKGYRFTAREEQTRKRRIVRV 75
Query: 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFL 208
+ N +I PI V M++ + G +VCT ++ + E F
Sbjct: 76 GAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAFCTREKFP 135
Query: 209 LKQVGQEISVGP 220
+ +E GP
Sbjct: 136 WCEFAEEAENGP 147
>pdb|1WIW|A Chain A, Crystal Structure Of A Glucose-6-Phosphate Isomerase Like
Protein From Thermus Thermophilus Hb8
pdb|1WIW|B Chain B, Crystal Structure Of A Glucose-6-Phosphate Isomerase Like
Protein From Thermus Thermophilus Hb8
Length = 290
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 95 LGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANP 154
+G+ ++H P L + + ++ + G E V L +AL E+R+RL V NP
Sbjct: 94 VGFRPGVEVHIPPSPLAPYRYLRFLLLATGREEV-LRSVDEALLEERRRLGPEVPVEENP 152
Query: 155 S 155
+
Sbjct: 153 A 153
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 40 PQIGDLN---SLS---GAFRPGGAGKTTLMDVLAGR 69
PQI D+N SLS P GAGK+TL++VL G
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 40 PQIGDLN---SLS---GAFRPGGAGKTTLMDVLAGR 69
PQI D+N SLS P GAGK+TL++VL G
Sbjct: 681 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 716
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 40 PQIGDLN---SLS---GAFRPGGAGKTTLMDVLAGR 69
PQI D+N SLS P GAGK+TL++VL G
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 108 DTLYDFTHCLYMFIEEGMELVELNPFRQALF---EQRKRLTVAVEFVANPSIISRDEPIS 164
+ L + L ++ G+E + L+ L QR RL + I DEP
Sbjct: 436 ELLKEIEKRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTI 495
Query: 165 GLDARAATTVIRMVRNTVDMGRTVVCTIHQPSI 197
GL R +I+ ++ D+G TV+ H +
Sbjct: 496 GLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
Adenylyl Cyclase Rv1625c
Length = 204
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 77 RNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEE-----GMELVELN 131
RNI Y E FA I+G+ E+ +P D L F LY +E G+E +E++
Sbjct: 1 RNIIADKYDEASVLFADIVGFTERASSTAPAD-LVRFLDRLYSAFDELVDQHGLEKIEVS 59
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDI 199
Q K + + + NP +I DEPI+G+ A + V G T + H+ I +
Sbjct: 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL 217
Query: 200 FYSFDELFLLKQVGQEISVG 219
Y D L+++ GQ I+ G
Sbjct: 218 NY-IDHLYVMFN-GQIIAEG 235
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDI 199
Q K + + + NP +I DEPI+G+ A + V G T + H+ I +
Sbjct: 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL 217
Query: 200 FYSFDELFLLKQVGQEISVG 219
Y D L+++ GQ I+ G
Sbjct: 218 NY-IDHLYVMFN-GQIIAEG 235
>pdb|2XM7|A Chain A, Structural And Mechanistic Analysis Of The Magnesium-
Independent Aromatic Prenyltransferase Cloq From The
Clorobiocin Biosynthetic Pathway
Length = 327
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 169 RAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPS--SI 226
R TV+ R+ G T+ T QP + YSF + V + I G L + ++
Sbjct: 36 RLTDTVLEAFRDNFAQGATLWKTTSQPGDQLSYSFFSRLKMDTVSRAIDAGLLDAAHPTL 95
Query: 227 HLISYFEKIFGVSKIKDG 244
++ + ++G + ++ G
Sbjct: 96 AVVDAWSSLYGGAPVQSG 113
>pdb|4GH7|A Chain A, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
pdb|4GH7|C Chain C, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
Length = 188
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 236 FGVSKIKDGYNLATWLLEVTALSQERAFGVDFSDIYRNSE-----LYKRAKAVITELSK 289
F + IK L +WL+ V + + + V F +Y+N E LY R K + EL +
Sbjct: 92 FTLGNIKSWPGLTSWLVRVVSTNYNQHAMVFFKRVYQNRELFEITLYGRTKELTNELKE 150
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTV 174
QR+ L + F+ANP I+ DE S +D + ++
Sbjct: 496 QRQLLAITRAFLANPKILILDEATSNVDTKTEKSI 530
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 38/209 (18%)
Query: 43 GDLNSLSGAFRPGGAGKTTLMDVLAG--RKPGGYI---TRNIT----------------V 81
GD+ + G P G+GK+TL++V+ G + G + ++IT
Sbjct: 33 GDVTLIIG---PNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQ 89
Query: 82 SGYPEKQETFARILGYCEQNDIHSPHDTLY--DFTHCLYMFIEEGMELVELNPFRQALFE 139
+ P K+ T L E N SP ++L+ + +E+ +++E L++
Sbjct: 90 TPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-LYD 148
Query: 140 ---------QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVC 190
Q K + + + NP +I D+PI+G+ A + V G T +
Sbjct: 149 RKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLI 208
Query: 191 TIHQPSIDIFYSFDELFLLKQVGQEISVG 219
H+ I + Y D L+++ GQ I+ G
Sbjct: 209 IEHRLDIVLNY-IDHLYVMFN-GQIIAEG 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,154,448
Number of Sequences: 62578
Number of extensions: 536650
Number of successful extensions: 1242
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1161
Number of HSP's gapped (non-prelim): 90
length of query: 531
length of database: 14,973,337
effective HSP length: 103
effective length of query: 428
effective length of database: 8,527,803
effective search space: 3649899684
effective search space used: 3649899684
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)