Query 042733
Match_columns 531
No_of_seqs 463 out of 3460
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 08:53:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0065 Pleiotropic drug resis 100.0 7E-93 1.5E-97 795.0 43.1 512 16-528 770-1364(1391)
2 PLN03140 ABC transporter G fam 100.0 9.8E-90 2.1E-94 813.9 51.4 512 18-529 858-1448(1470)
3 KOG0061 Transporter, ABC super 100.0 7.4E-83 1.6E-87 702.2 37.8 491 24-528 22-589 (613)
4 TIGR00956 3a01205 Pleiotropic 100.0 2.5E-81 5.5E-86 744.4 50.9 501 26-529 758-1373(1394)
5 TIGR00955 3a01204 The Eye Pigm 100.0 5.8E-82 1.3E-86 700.9 41.3 480 41-528 37-594 (617)
6 PLN03211 ABC transporter G-25; 100.0 1.4E-81 3.1E-86 698.5 42.9 457 25-492 37-598 (659)
7 TIGR00956 3a01205 Pleiotropic 100.0 2.2E-80 4.7E-85 736.4 43.6 478 43-528 75-675 (1394)
8 PLN03140 ABC transporter G fam 100.0 7.1E-79 1.5E-83 721.4 39.0 476 43-526 179-768 (1470)
9 KOG0065 Pleiotropic drug resis 100.0 2.5E-75 5.4E-80 653.8 29.2 478 43-528 129-711 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 2.5E-42 5.4E-47 322.6 20.1 190 27-222 2-221 (240)
11 COG1120 FepC ABC-type cobalami 100.0 8.1E-39 1.7E-43 312.7 19.7 191 27-223 2-225 (258)
12 COG1131 CcmA ABC-type multidru 100.0 1.4E-38 2.9E-43 322.4 21.6 190 27-221 4-221 (293)
13 COG1135 AbcC ABC-type metal io 100.0 1.1E-38 2.4E-43 312.4 17.8 191 28-222 2-227 (339)
14 COG1127 Ttg2A ABC-type transpo 100.0 2.9E-38 6.4E-43 299.6 20.1 204 26-235 7-248 (263)
15 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.8E-38 8.2E-43 306.5 21.3 191 26-223 3-224 (254)
16 COG1125 OpuBA ABC-type proline 100.0 8.4E-39 1.8E-43 304.6 16.2 190 28-223 2-222 (309)
17 COG3638 ABC-type phosphate/pho 100.0 4.8E-38 1E-42 297.3 18.0 194 26-224 2-235 (258)
18 COG4555 NatA ABC-type Na+ tran 100.0 4.3E-38 9.4E-43 290.3 14.1 199 9-222 2-218 (245)
19 COG1116 TauB ABC-type nitrate/ 100.0 4.5E-37 9.7E-42 295.3 19.6 178 27-211 3-206 (248)
20 COG2884 FtsE Predicted ATPase 100.0 4.4E-37 9.5E-42 281.3 16.8 189 27-220 1-220 (223)
21 PRK13537 nodulation ABC transp 100.0 2.5E-36 5.5E-41 308.2 22.7 204 3-222 2-223 (306)
22 COG1136 SalX ABC-type antimicr 100.0 3.7E-36 8E-41 288.6 20.3 182 28-214 2-219 (226)
23 COG3839 MalK ABC-type sugar tr 100.0 2.2E-36 4.8E-41 306.3 19.1 192 26-223 2-220 (338)
24 COG3842 PotA ABC-type spermidi 100.0 1.4E-36 3.1E-41 309.3 16.9 192 26-223 4-223 (352)
25 TIGR02314 ABC_MetN D-methionin 100.0 1.3E-35 2.8E-40 306.2 22.9 191 28-222 2-226 (343)
26 PRK13536 nodulation factor exp 100.0 1.9E-35 4.1E-40 305.3 22.9 192 25-222 39-257 (340)
27 COG1122 CbiO ABC-type cobalt t 100.0 9.9E-36 2.2E-40 290.4 19.4 190 27-221 3-223 (235)
28 PRK11650 ugpC glycerol-3-phosp 100.0 3.6E-35 7.7E-40 305.1 22.6 191 27-222 3-220 (356)
29 COG1118 CysA ABC-type sulfate/ 100.0 6.5E-36 1.4E-40 292.2 15.7 190 28-223 3-224 (345)
30 TIGR03265 PhnT2 putative 2-ami 100.0 3.8E-35 8.2E-40 304.6 22.3 190 27-222 4-220 (353)
31 cd03261 ABC_Org_Solvent_Resist 100.0 4.3E-35 9.3E-40 288.4 21.3 188 28-221 1-221 (235)
32 TIGR00960 3a0501s02 Type II (G 100.0 5.1E-35 1.1E-39 284.2 20.6 184 28-215 2-216 (216)
33 PRK11432 fbpC ferric transport 100.0 6.8E-35 1.5E-39 302.2 22.3 190 27-222 6-222 (351)
34 COG1124 DppF ABC-type dipeptid 100.0 4.4E-35 9.6E-40 279.2 18.1 192 27-222 3-227 (252)
35 TIGR03258 PhnT 2-aminoethylpho 100.0 8.6E-35 1.9E-39 302.5 22.0 190 27-222 5-224 (362)
36 cd03259 ABC_Carb_Solutes_like 100.0 1.1E-34 2.4E-39 281.2 20.9 186 28-219 1-213 (213)
37 TIGR01288 nodI ATP-binding ABC 100.0 1.4E-34 3E-39 295.4 22.6 190 26-221 3-219 (303)
38 cd03266 ABC_NatA_sodium_export 100.0 2.2E-34 4.7E-39 280.1 21.6 188 28-219 2-218 (218)
39 cd03265 ABC_DrrA DrrA is the A 100.0 2.2E-34 4.7E-39 280.6 21.3 188 28-221 1-216 (220)
40 PRK11153 metN DL-methionine tr 100.0 2.7E-34 5.8E-39 297.7 22.7 191 28-222 2-226 (343)
41 cd03268 ABC_BcrA_bacitracin_re 100.0 1.6E-34 3.5E-39 279.0 19.6 186 28-219 1-208 (208)
42 PRK09452 potA putrescine/sperm 100.0 2.7E-34 5.9E-39 299.8 22.7 191 26-222 13-230 (375)
43 PRK10851 sulfate/thiosulfate t 100.0 2.5E-34 5.3E-39 298.5 22.2 190 27-222 2-222 (353)
44 cd03269 ABC_putative_ATPase Th 100.0 3.3E-34 7.1E-39 277.3 21.4 185 28-219 1-210 (210)
45 COG3840 ThiQ ABC-type thiamine 100.0 6.9E-35 1.5E-39 264.9 15.1 173 46-222 25-215 (231)
46 PRK09536 btuD corrinoid ABC tr 100.0 2.5E-34 5.3E-39 302.0 21.5 191 27-223 3-225 (402)
47 cd03301 ABC_MalK_N The N-termi 100.0 3.8E-34 8.3E-39 277.3 21.3 186 28-219 1-213 (213)
48 PRK11607 potG putrescine trans 100.0 3.9E-34 8.5E-39 299.0 22.6 192 25-222 17-235 (377)
49 cd03218 ABC_YhbG The ABC trans 100.0 3.5E-34 7.6E-39 281.3 20.7 189 28-222 1-218 (232)
50 cd03293 ABC_NrtD_SsuB_transpor 100.0 4.2E-34 9.1E-39 278.6 21.0 189 28-221 1-218 (220)
51 TIGR03522 GldA_ABC_ATP gliding 100.0 4.7E-34 1E-38 291.2 22.0 189 27-222 2-217 (301)
52 PRK11000 maltose/maltodextrin 100.0 4.6E-34 9.9E-39 298.5 22.0 190 27-222 3-219 (369)
53 cd03263 ABC_subfamily_A The AB 100.0 4.5E-34 9.9E-39 278.2 20.4 189 28-221 1-216 (220)
54 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 4.8E-34 1E-38 277.7 20.4 183 28-215 1-218 (218)
55 TIGR02315 ABC_phnC phosphonate 100.0 4.2E-34 9.2E-39 282.6 20.2 190 28-222 2-231 (243)
56 cd03296 ABC_CysA_sulfate_impor 100.0 8.3E-34 1.8E-38 280.0 22.2 189 27-221 2-221 (239)
57 cd03260 ABC_PstB_phosphate_tra 100.0 5.7E-34 1.2E-38 278.9 20.8 187 28-222 1-225 (227)
58 cd03256 ABC_PhnC_transporter A 100.0 5.7E-34 1.2E-38 281.3 20.6 189 29-222 2-230 (241)
59 PRK09493 glnQ glutamine ABC tr 100.0 9.3E-34 2E-38 279.8 22.2 188 28-221 2-220 (240)
60 cd03226 ABC_cobalt_CbiO_domain 100.0 3.1E-34 6.7E-39 276.5 18.1 182 30-216 2-205 (205)
61 cd03219 ABC_Mj1267_LivG_branch 100.0 7.4E-34 1.6E-38 279.7 20.8 188 28-221 1-227 (236)
62 COG1117 PstB ABC-type phosphat 100.0 3.8E-34 8.2E-39 266.6 17.1 191 26-222 6-233 (253)
63 cd03258 ABC_MetN_methionine_tr 100.0 8.3E-34 1.8E-38 278.8 20.5 190 28-221 2-225 (233)
64 PRK11629 lolD lipoprotein tran 100.0 2E-33 4.2E-38 276.3 22.7 190 27-221 5-229 (233)
65 PRK13637 cbiO cobalt transport 100.0 1.3E-33 2.9E-38 285.9 22.0 191 28-222 3-230 (287)
66 cd03292 ABC_FtsE_transporter F 100.0 1.3E-33 2.8E-38 273.8 20.9 183 28-215 1-214 (214)
67 PRK11264 putative amino-acid A 100.0 1.6E-33 3.5E-38 279.7 22.0 189 27-221 3-228 (250)
68 TIGR02673 FtsE cell division A 100.0 1.2E-33 2.6E-38 274.1 20.5 182 28-214 2-214 (214)
69 PRK13651 cobalt transporter AT 100.0 1.8E-33 4E-38 286.8 22.8 192 27-222 2-250 (305)
70 COG4152 ABC-type uncharacteriz 100.0 2.1E-34 4.5E-39 273.0 14.6 188 28-222 3-215 (300)
71 TIGR01188 drrA daunorubicin re 100.0 7.2E-34 1.6E-38 290.0 19.7 183 29-221 8-208 (302)
72 PRK13634 cbiO cobalt transport 100.0 1.5E-33 3.2E-38 286.0 21.7 191 28-222 3-231 (290)
73 PRK13643 cbiO cobalt transport 100.0 1.8E-33 3.9E-38 285.1 21.9 191 28-222 2-229 (288)
74 PRK11124 artP arginine transpo 100.0 2.1E-33 4.5E-38 277.7 21.8 189 27-221 2-225 (242)
75 cd03234 ABCG_White The White s 100.0 2.5E-33 5.3E-38 274.3 22.1 191 28-219 4-226 (226)
76 cd03264 ABC_drug_resistance_li 100.0 1.7E-33 3.7E-38 272.5 20.8 184 29-219 2-211 (211)
77 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.1E-33 4.5E-38 277.7 21.3 188 29-221 2-220 (242)
78 PRK13647 cbiO cobalt transport 100.0 2.6E-33 5.5E-38 282.1 22.3 190 27-221 4-222 (274)
79 PRK10619 histidine/lysine/argi 100.0 2E-33 4.4E-38 280.3 21.4 188 28-221 6-236 (257)
80 PRK11247 ssuB aliphatic sulfon 100.0 2.9E-33 6.2E-38 278.8 22.3 188 26-221 11-218 (257)
81 PRK11831 putative ABC transpor 100.0 2.2E-33 4.8E-38 281.8 21.6 190 27-222 7-229 (269)
82 cd03262 ABC_HisP_GlnQ_permease 100.0 1.8E-33 3.9E-38 272.5 20.1 182 28-215 1-213 (213)
83 PRK11614 livF leucine/isoleuci 100.0 2.6E-33 5.6E-38 276.1 20.7 190 27-222 5-222 (237)
84 PRK13636 cbiO cobalt transport 100.0 3.6E-33 7.9E-38 282.2 22.2 192 26-222 4-227 (283)
85 TIGR03740 galliderm_ABC gallid 100.0 2.9E-33 6.4E-38 273.2 20.7 189 28-223 1-210 (223)
86 PRK13646 cbiO cobalt transport 100.0 3.3E-33 7.1E-38 283.0 21.6 190 27-221 2-230 (286)
87 cd03224 ABC_TM1139_LivF_branch 100.0 2.2E-33 4.7E-38 273.7 19.4 188 28-221 1-216 (222)
88 PRK10895 lipopolysaccharide AB 100.0 3.3E-33 7.1E-38 276.0 20.9 190 27-222 3-222 (241)
89 PRK13631 cbiO cobalt transport 100.0 3.9E-33 8.4E-38 286.2 22.1 193 25-222 19-261 (320)
90 PRK10908 cell division protein 100.0 4.5E-33 9.7E-38 271.7 21.3 184 28-216 2-216 (222)
91 PRK13641 cbiO cobalt transport 100.0 5.2E-33 1.1E-37 281.6 22.4 192 27-222 2-230 (287)
92 PRK11248 tauB taurine transpor 100.0 6.4E-33 1.4E-37 276.3 22.5 187 28-221 2-215 (255)
93 PRK13650 cbiO cobalt transport 100.0 4E-33 8.6E-38 281.4 21.0 191 27-222 4-225 (279)
94 cd03257 ABC_NikE_OppD_transpor 100.0 5.6E-33 1.2E-37 271.8 21.2 188 28-219 2-228 (228)
95 cd03225 ABC_cobalt_CbiO_domain 100.0 3.3E-33 7.1E-38 270.4 18.8 181 30-214 2-211 (211)
96 PRK11231 fecE iron-dicitrate t 100.0 6E-33 1.3E-37 276.6 21.1 190 27-222 2-223 (255)
97 TIGR00972 3a0107s01c2 phosphat 100.0 7.6E-33 1.7E-37 274.5 21.8 188 28-221 2-227 (247)
98 TIGR03005 ectoine_ehuA ectoine 100.0 8.1E-33 1.8E-37 275.1 21.9 188 28-221 1-231 (252)
99 TIGR02211 LolD_lipo_ex lipopro 100.0 7E-33 1.5E-37 270.0 21.0 184 28-216 2-220 (221)
100 PRK11300 livG leucine/isoleuci 100.0 5.9E-33 1.3E-37 276.5 21.0 190 27-222 5-239 (255)
101 PRK13635 cbiO cobalt transport 100.0 8.5E-33 1.9E-37 278.9 22.3 191 27-222 5-225 (279)
102 PRK13644 cbiO cobalt transport 100.0 6.9E-33 1.5E-37 278.9 21.4 189 28-222 2-220 (274)
103 TIGR01186 proV glycine betaine 100.0 3.3E-33 7.2E-38 290.0 19.6 184 29-222 8-215 (363)
104 COG1137 YhbG ABC-type (unclass 100.0 1.7E-34 3.6E-39 266.3 8.4 172 48-223 32-225 (243)
105 PRK09984 phosphonate/organopho 100.0 9.3E-33 2E-37 276.3 21.6 192 27-222 4-238 (262)
106 PRK13652 cbiO cobalt transport 100.0 1.1E-32 2.3E-37 278.0 22.1 191 27-222 3-223 (277)
107 PRK15079 oligopeptide ABC tran 100.0 1E-32 2.2E-37 284.1 22.4 193 26-222 7-247 (331)
108 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.4E-32 3.1E-37 270.7 22.4 187 28-221 2-216 (236)
109 TIGR03411 urea_trans_UrtD urea 100.0 9.5E-33 2.1E-37 272.9 21.2 187 28-221 3-226 (242)
110 PRK10253 iron-enterobactin tra 100.0 9.5E-33 2.1E-37 276.7 21.4 191 26-222 6-229 (265)
111 PRK14268 phosphate ABC transpo 100.0 1.4E-32 3.1E-37 274.4 22.5 191 25-221 10-237 (258)
112 cd03294 ABC_Pro_Gly_Bertaine T 100.0 4.1E-33 9E-38 279.8 18.7 186 30-221 27-245 (269)
113 PRK13548 hmuV hemin importer A 100.0 1.1E-32 2.4E-37 275.1 21.5 190 27-222 2-226 (258)
114 PRK13632 cbiO cobalt transport 100.0 1.3E-32 2.7E-37 276.7 22.0 192 26-222 6-227 (271)
115 cd03235 ABC_Metallic_Cations A 100.0 4.7E-33 1E-37 269.8 18.2 181 30-219 2-213 (213)
116 TIGR02769 nickel_nikE nickel i 100.0 1.2E-32 2.6E-37 276.0 21.5 192 27-222 2-236 (265)
117 PRK13648 cbiO cobalt transport 100.0 1.5E-32 3.2E-37 275.9 22.2 192 26-222 6-227 (269)
118 PRK14273 phosphate ABC transpo 100.0 2E-32 4.2E-37 272.7 22.8 191 25-221 5-233 (254)
119 PRK13638 cbiO cobalt transport 100.0 1.3E-32 2.9E-37 276.5 21.7 188 28-221 2-220 (271)
120 COG0411 LivG ABC-type branched 100.0 2.9E-33 6.2E-38 267.0 15.6 200 8-223 4-236 (250)
121 PRK13649 cbiO cobalt transport 100.0 1.8E-32 3.9E-37 276.8 22.4 191 27-222 2-230 (280)
122 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.4E-32 3.1E-37 266.1 20.7 183 29-219 2-211 (211)
123 PRK10575 iron-hydroxamate tran 100.0 1.6E-32 3.4E-37 275.1 21.5 191 26-222 10-233 (265)
124 PRK14247 phosphate ABC transpo 100.0 2.2E-32 4.9E-37 271.6 22.3 190 27-221 3-229 (250)
125 cd03213 ABCG_EPDR ABCG transpo 100.0 2.9E-32 6.2E-37 260.7 22.2 178 26-219 2-194 (194)
126 PRK10584 putative ABC transpor 100.0 2.6E-32 5.6E-37 267.4 22.4 186 27-217 6-226 (228)
127 PRK11308 dppF dipeptide transp 100.0 2.1E-32 4.5E-37 281.6 22.7 193 26-222 4-240 (327)
128 PRK11022 dppD dipeptide transp 100.0 2.4E-32 5.3E-37 281.1 23.1 194 27-222 3-239 (326)
129 TIGR01277 thiQ thiamine ABC tr 100.0 1.7E-32 3.7E-37 265.9 20.6 184 29-220 2-212 (213)
130 TIGR01978 sufC FeS assembly AT 100.0 1.4E-32 3.1E-37 271.7 20.2 190 28-221 1-229 (243)
131 PRK14267 phosphate ABC transpo 100.0 2.9E-32 6.3E-37 271.2 22.6 190 27-221 4-232 (253)
132 TIGR03410 urea_trans_UrtE urea 100.0 1E-32 2.2E-37 270.6 18.9 189 28-222 1-217 (230)
133 PRK13640 cbiO cobalt transport 100.0 2.1E-32 4.5E-37 276.6 21.5 194 26-222 4-228 (282)
134 cd03233 ABC_PDR_domain1 The pl 100.0 3.3E-32 7.1E-37 261.9 21.8 185 27-219 3-202 (202)
135 PRK13639 cbiO cobalt transport 100.0 2.2E-32 4.7E-37 275.5 21.5 190 28-222 2-222 (275)
136 PRK14250 phosphate ABC transpo 100.0 2E-32 4.2E-37 270.6 20.2 188 27-221 3-216 (241)
137 PRK14242 phosphate transporter 100.0 3.4E-32 7.4E-37 270.7 22.0 191 25-221 4-232 (253)
138 PRK13633 cobalt transporter AT 100.0 2.7E-32 5.8E-37 275.5 21.4 191 27-222 4-229 (280)
139 cd03232 ABC_PDR_domain2 The pl 100.0 5.1E-32 1.1E-36 258.5 21.9 179 27-219 3-192 (192)
140 PRK13645 cbiO cobalt transport 100.0 3.6E-32 7.7E-37 275.9 22.0 191 27-221 6-235 (289)
141 TIGR03873 F420-0_ABC_ATP propo 100.0 2.9E-32 6.2E-37 271.8 20.8 189 28-222 2-222 (256)
142 PRK10070 glycine betaine trans 100.0 2.6E-32 5.7E-37 286.4 21.5 184 29-222 43-250 (400)
143 PRK14245 phosphate ABC transpo 100.0 4.4E-32 9.5E-37 269.5 21.9 190 26-221 2-229 (250)
144 PRK13549 xylose transporter AT 100.0 2.8E-32 6.1E-37 297.3 22.3 194 27-224 5-230 (506)
145 cd03300 ABC_PotA_N PotA is an 100.0 4.5E-32 9.8E-37 266.5 21.4 188 28-221 1-215 (232)
146 COG4175 ProV ABC-type proline/ 100.0 1.1E-32 2.4E-37 269.8 16.8 175 45-223 44-251 (386)
147 PRK11144 modC molybdate transp 100.0 2.8E-32 6E-37 283.6 20.9 172 47-222 25-214 (352)
148 PRK14256 phosphate ABC transpo 100.0 6.7E-32 1.5E-36 268.5 22.7 191 27-222 4-232 (252)
149 TIGR00968 3a0106s01 sulfate AB 100.0 3.8E-32 8.3E-37 267.9 20.7 188 28-221 1-215 (237)
150 COG4598 HisP ABC-type histidin 100.0 4.4E-33 9.4E-38 252.5 12.7 172 47-222 33-237 (256)
151 PRK10744 pstB phosphate transp 100.0 6.2E-32 1.4E-36 270.0 22.2 194 22-221 8-239 (260)
152 PRK10771 thiQ thiamine transpo 100.0 6E-32 1.3E-36 265.6 21.5 186 28-221 2-214 (232)
153 PRK15093 antimicrobial peptide 100.0 7.7E-32 1.7E-36 278.1 23.2 194 27-222 3-244 (330)
154 PRK14241 phosphate transporter 100.0 7.8E-32 1.7E-36 269.0 22.5 191 27-221 4-237 (258)
155 PRK15112 antimicrobial peptide 100.0 5.9E-32 1.3E-36 271.2 21.7 191 27-221 4-234 (267)
156 PRK14237 phosphate transporter 100.0 8.3E-32 1.8E-36 270.1 22.8 196 20-221 13-246 (267)
157 PRK14235 phosphate transporter 100.0 8.1E-32 1.8E-36 270.2 22.1 191 25-221 17-246 (267)
158 COG4559 ABC-type hemin transpo 100.0 3.2E-32 7E-37 253.3 17.6 190 28-223 2-227 (259)
159 PRK09473 oppD oligopeptide tra 100.0 9.1E-32 2E-36 277.1 22.8 195 26-222 11-247 (330)
160 PRK14269 phosphate ABC transpo 100.0 7.2E-32 1.6E-36 267.4 21.2 189 27-221 2-225 (246)
161 TIGR03415 ABC_choXWV_ATP choli 100.0 5.4E-32 1.2E-36 282.2 21.3 187 26-222 36-250 (382)
162 PRK10418 nikD nickel transport 100.0 7E-32 1.5E-36 268.7 21.0 192 25-221 2-225 (254)
163 cd03267 ABC_NatA_like Similar 100.0 5.5E-32 1.2E-36 266.6 20.1 168 48-219 49-236 (236)
164 PRK13642 cbiO cobalt transport 100.0 8.1E-32 1.7E-36 271.6 21.6 191 27-222 4-225 (277)
165 PRK13547 hmuV hemin importer A 100.0 6.3E-32 1.4E-36 271.4 20.5 191 28-222 2-240 (272)
166 cd03297 ABC_ModC_molybdenum_tr 100.0 8.3E-32 1.8E-36 261.3 20.6 177 32-219 16-214 (214)
167 PRK15439 autoinducer 2 ABC tra 100.0 7.1E-32 1.5E-36 294.3 22.2 191 27-223 11-226 (510)
168 PRK14259 phosphate ABC transpo 100.0 9.2E-32 2E-36 270.1 21.2 192 25-221 11-248 (269)
169 TIGR02142 modC_ABC molybdenum 100.0 7.8E-32 1.7E-36 280.6 21.3 172 47-222 24-217 (354)
170 cd03299 ABC_ModC_like Archeal 100.0 1.2E-31 2.5E-36 264.1 21.4 186 29-221 2-214 (235)
171 PRK14270 phosphate ABC transpo 100.0 1.5E-31 3.2E-36 265.9 22.2 191 26-222 3-231 (251)
172 PRK14239 phosphate transporter 100.0 1.6E-31 3.4E-36 265.7 22.4 189 27-221 5-231 (252)
173 PRK14248 phosphate ABC transpo 100.0 1.7E-31 3.7E-36 268.1 22.6 206 4-221 4-247 (268)
174 PRK10762 D-ribose transporter 100.0 9.5E-32 2.1E-36 292.8 22.3 192 27-224 4-228 (501)
175 PRK15056 manganese/iron transp 100.0 1.3E-31 2.7E-36 269.6 21.4 191 27-223 6-227 (272)
176 PRK11701 phnK phosphonate C-P 100.0 9.9E-32 2.1E-36 268.2 20.5 189 27-221 6-236 (258)
177 TIGR01184 ntrCD nitrate transp 100.0 9.5E-32 2.1E-36 263.9 19.8 179 31-221 2-199 (230)
178 PRK14272 phosphate ABC transpo 100.0 2E-31 4.2E-36 265.1 22.3 190 27-221 4-231 (252)
179 PRK09700 D-allose transporter 100.0 8.5E-32 1.8E-36 293.9 21.5 191 27-223 5-231 (510)
180 PRK14274 phosphate ABC transpo 100.0 1.7E-31 3.7E-36 266.7 21.8 189 27-221 12-238 (259)
181 PRK14240 phosphate transporter 100.0 2.2E-31 4.7E-36 264.5 22.3 189 27-221 3-229 (250)
182 PRK10419 nikE nickel transport 100.0 1.7E-31 3.6E-36 268.1 21.7 193 27-223 3-238 (268)
183 COG0410 LivF ABC-type branched 100.0 6.2E-32 1.3E-36 256.0 17.1 191 27-223 3-223 (237)
184 PRK14271 phosphate ABC transpo 100.0 3.7E-31 8E-36 266.6 23.9 192 25-222 19-247 (276)
185 COG0444 DppD ABC-type dipeptid 100.0 1.6E-31 3.5E-36 265.3 20.8 193 28-222 2-239 (316)
186 TIGR02982 heterocyst_DevA ABC 100.0 2E-31 4.4E-36 259.7 21.2 183 28-215 2-219 (220)
187 PRK14262 phosphate ABC transpo 100.0 2.8E-31 6E-36 263.8 22.5 189 27-221 3-229 (250)
188 TIGR01257 rim_protein retinal- 100.0 8.1E-32 1.8E-36 322.8 22.1 192 26-221 1936-2154(2272)
189 cd03230 ABC_DR_subfamily_A Thi 100.0 1.2E-31 2.5E-36 251.8 18.6 162 28-215 1-173 (173)
190 PRK14236 phosphate transporter 100.0 3.4E-31 7.3E-36 266.4 23.2 190 26-221 24-251 (272)
191 PRK14253 phosphate ABC transpo 100.0 2.2E-31 4.7E-36 264.3 21.5 189 27-221 3-228 (249)
192 PRK13543 cytochrome c biogenes 100.0 1.8E-31 3.8E-36 259.1 20.1 180 26-210 10-211 (214)
193 COG2274 SunT ABC-type bacterio 100.0 5.8E-32 1.3E-36 300.2 18.8 196 20-222 464-692 (709)
194 TIGR03608 L_ocin_972_ABC putat 100.0 1.4E-31 3.1E-36 257.9 19.0 173 31-209 2-206 (206)
195 cd03252 ABCC_Hemolysin The ABC 100.0 1.3E-31 2.7E-36 264.0 18.7 187 28-221 1-220 (237)
196 PRK14260 phosphate ABC transpo 100.0 3.2E-31 6.9E-36 264.8 21.6 191 27-222 7-239 (259)
197 cd03245 ABCC_bacteriocin_expor 100.0 1.3E-31 2.9E-36 260.8 17.9 185 28-219 3-220 (220)
198 PRK14251 phosphate ABC transpo 100.0 5.5E-31 1.2E-35 261.7 22.7 189 27-221 4-230 (251)
199 PRK14261 phosphate ABC transpo 100.0 6E-31 1.3E-35 261.8 23.0 189 27-221 6-232 (253)
200 PRK14244 phosphate ABC transpo 100.0 4.7E-31 1E-35 262.3 22.1 189 27-221 5-232 (251)
201 PRK14255 phosphate ABC transpo 100.0 5.2E-31 1.1E-35 262.1 22.1 190 26-221 4-231 (252)
202 cd03231 ABC_CcmA_heme_exporter 100.0 2.6E-31 5.7E-36 255.4 19.0 177 28-209 1-198 (201)
203 cd03244 ABCC_MRP_domain2 Domai 100.0 2.2E-31 4.7E-36 259.5 18.6 187 27-220 2-220 (221)
204 TIGR02323 CP_lyasePhnK phospho 100.0 4.5E-31 9.8E-36 262.7 21.0 189 27-221 3-233 (253)
205 cd03246 ABCC_Protease_Secretio 100.0 2.1E-31 4.5E-36 250.1 17.5 161 28-215 1-173 (173)
206 PRK14249 phosphate ABC transpo 100.0 8E-31 1.7E-35 260.6 22.5 189 27-221 4-230 (251)
207 PRK14275 phosphate ABC transpo 100.0 6.7E-31 1.5E-35 266.1 22.2 191 25-221 37-265 (286)
208 PRK14238 phosphate transporter 100.0 7E-31 1.5E-35 264.0 22.2 191 25-221 22-250 (271)
209 PRK13538 cytochrome c biogenes 100.0 4.5E-31 9.7E-36 254.4 19.8 177 28-209 2-202 (204)
210 TIGR01187 potA spermidine/putr 100.0 2.1E-31 4.6E-36 274.2 18.6 167 52-222 2-186 (325)
211 COG4525 TauB ABC-type taurine 100.0 2E-31 4.4E-36 244.8 16.3 192 26-222 2-220 (259)
212 PRK10247 putative ABC transpor 100.0 3.6E-31 7.8E-36 258.9 19.2 189 25-220 5-221 (225)
213 PRK14258 phosphate ABC transpo 100.0 8.7E-31 1.9E-35 261.9 22.3 192 27-222 7-241 (261)
214 cd03251 ABCC_MsbA MsbA is an e 100.0 2.9E-31 6.3E-36 260.9 18.5 187 28-221 1-220 (234)
215 TIGR02633 xylG D-xylose ABC tr 100.0 5.2E-31 1.1E-35 287.0 22.3 192 28-223 2-227 (500)
216 PRK14265 phosphate ABC transpo 100.0 8.4E-31 1.8E-35 263.8 22.0 194 24-222 17-254 (274)
217 PRK09580 sufC cysteine desulfu 100.0 7.4E-31 1.6E-35 260.3 21.1 190 28-221 2-230 (248)
218 TIGR02770 nickel_nikD nickel i 100.0 6.1E-31 1.3E-35 258.2 20.0 184 30-221 2-210 (230)
219 cd03215 ABC_Carb_Monos_II This 100.0 5.3E-31 1.1E-35 249.4 18.9 162 28-215 5-182 (182)
220 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.5E-31 5.5E-36 300.0 19.7 188 26-222 450-669 (686)
221 PRK14257 phosphate ABC transpo 100.0 1.2E-30 2.5E-35 268.7 22.9 193 26-222 79-309 (329)
222 cd03289 ABCC_CFTR2 The CFTR su 100.0 4E-31 8.8E-36 265.5 18.7 189 27-223 2-222 (275)
223 PRK14254 phosphate ABC transpo 100.0 1.3E-30 2.9E-35 263.7 22.6 191 25-221 37-264 (285)
224 PRK11288 araG L-arabinose tran 100.0 6.8E-31 1.5E-35 286.1 22.0 189 27-221 4-224 (501)
225 PRK03695 vitamin B12-transport 100.0 5.4E-31 1.2E-35 261.4 19.3 183 29-222 11-218 (248)
226 CHL00131 ycf16 sulfate ABC tra 100.0 1.4E-30 3.1E-35 258.9 22.3 192 27-222 7-237 (252)
227 PRK14243 phosphate transporter 100.0 9.3E-31 2E-35 262.1 21.0 190 27-221 10-243 (264)
228 PRK14246 phosphate ABC transpo 100.0 1.4E-30 3E-35 259.9 22.0 190 27-221 10-236 (257)
229 PRK14266 phosphate ABC transpo 100.0 1.3E-30 2.8E-35 259.0 21.6 189 27-221 3-229 (250)
230 cd03247 ABCC_cytochrome_bd The 100.0 4.8E-31 1E-35 248.7 17.6 167 28-219 1-178 (178)
231 PRK10982 galactose/methyl gala 100.0 6E-31 1.3E-35 286.0 20.7 187 31-223 2-220 (491)
232 cd03229 ABC_Class3 This class 100.0 5.3E-31 1.1E-35 248.5 17.6 162 29-214 2-178 (178)
233 cd03254 ABCC_Glucan_exporter_l 100.0 3.9E-31 8.5E-36 259.1 17.4 187 27-221 2-221 (229)
234 COG4148 ModC ABC-type molybdat 100.0 7.2E-32 1.6E-36 260.0 11.8 172 47-222 25-214 (352)
235 PRK09544 znuC high-affinity zi 100.0 1.1E-30 2.3E-35 259.6 20.6 181 27-222 4-205 (251)
236 COG1123 ATPase components of v 100.0 1.3E-30 2.7E-35 276.5 22.3 194 24-221 277-514 (539)
237 PRK10261 glutathione transport 100.0 9.3E-31 2E-35 291.5 22.4 193 26-222 312-549 (623)
238 PRK10790 putative multidrug tr 100.0 4.8E-31 1E-35 293.1 20.0 189 26-222 339-559 (592)
239 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.8E-31 6.1E-36 300.8 18.5 187 26-221 476-695 (710)
240 PRK14263 phosphate ABC transpo 100.0 2.3E-30 5.1E-35 258.7 22.8 192 25-221 6-240 (261)
241 COG4988 CydD ABC-type transpor 100.0 2.9E-31 6.2E-36 280.3 16.9 190 25-222 318-539 (559)
242 TIGR01257 rim_protein retinal- 100.0 1.1E-30 2.5E-35 313.0 23.9 192 25-221 926-1144(2272)
243 PRK11176 lipid transporter ATP 100.0 3.5E-31 7.5E-36 293.7 18.2 189 26-221 340-562 (582)
244 PRK11174 cysteine/glutathione 100.0 4.2E-31 9.2E-36 293.3 18.6 187 26-221 348-567 (588)
245 COG1119 ModF ABC-type molybden 100.0 4.3E-31 9.4E-36 252.1 15.9 195 20-220 24-256 (257)
246 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 8.8E-31 1.9E-35 258.2 18.2 187 28-221 1-221 (238)
247 PRK14252 phosphate ABC transpo 100.0 3.5E-30 7.7E-35 258.1 22.8 191 25-221 14-244 (265)
248 PRK10938 putative molybdenum t 100.0 9.5E-31 2.1E-35 284.3 20.0 190 27-222 3-220 (490)
249 PRK13539 cytochrome c biogenes 100.0 1.3E-30 2.9E-35 251.7 18.7 177 27-210 2-199 (207)
250 TIGR03269 met_CoM_red_A2 methy 100.0 1.6E-30 3.4E-35 284.6 21.6 191 28-222 1-254 (520)
251 TIGR01842 type_I_sec_PrtD type 100.0 1.2E-30 2.6E-35 287.0 20.4 190 26-221 315-537 (544)
252 PRK11160 cysteine/glutathione 100.0 7.6E-31 1.6E-35 290.1 18.8 189 26-221 337-557 (574)
253 PRK15134 microcin C ABC transp 100.0 1.9E-30 4.1E-35 284.4 21.8 194 27-222 5-242 (529)
254 TIGR03269 met_CoM_red_A2 methy 100.0 2.3E-30 5E-35 283.3 22.3 192 26-221 278-512 (520)
255 TIGR03375 type_I_sec_LssB type 100.0 6.3E-31 1.4E-35 297.1 18.4 189 26-221 462-683 (694)
256 cd03369 ABCC_NFT1 Domain 2 of 100.0 2E-30 4.4E-35 250.3 19.3 185 27-221 6-207 (207)
257 cd03288 ABCC_SUR2 The SUR doma 100.0 1E-30 2.3E-35 260.7 17.7 191 25-222 17-239 (257)
258 COG1123 ATPase components of v 100.0 1.9E-30 4.1E-35 275.1 20.6 194 27-222 5-240 (539)
259 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.9E-30 4.2E-35 249.2 18.8 174 28-220 1-188 (200)
260 COG1129 MglA ABC-type sugar tr 100.0 2.6E-30 5.7E-35 272.3 21.1 193 25-223 6-232 (500)
261 TIGR03771 anch_rpt_ABC anchore 100.0 3E-30 6.5E-35 252.1 20.1 170 47-223 7-198 (223)
262 KOG0057 Mitochondrial Fe/S clu 100.0 8.4E-31 1.8E-35 273.0 16.9 190 24-222 348-570 (591)
263 PRK13549 xylose transporter AT 100.0 1.8E-30 3.8E-35 283.2 20.4 196 26-224 258-492 (506)
264 cd03214 ABC_Iron-Siderophores_ 100.0 7.9E-31 1.7E-35 247.7 15.3 161 30-219 2-180 (180)
265 COG4181 Predicted ABC-type tra 100.0 7.4E-31 1.6E-35 236.4 14.0 185 28-217 7-226 (228)
266 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 3.1E-30 6.7E-35 252.2 19.6 177 28-219 23-224 (224)
267 COG4161 ArtP ABC-type arginine 100.0 1.4E-30 2.9E-35 232.5 15.0 190 27-222 2-226 (242)
268 PRK13540 cytochrome c biogenes 100.0 4.3E-30 9.2E-35 246.8 19.7 174 28-207 2-197 (200)
269 TIGR01189 ccmA heme ABC export 100.0 2.7E-30 5.8E-35 247.8 18.3 173 29-208 2-197 (198)
270 PRK10261 glutathione transport 100.0 3.4E-30 7.3E-35 287.0 21.8 192 27-222 12-254 (623)
271 COG4987 CydC ABC-type transpor 100.0 3.5E-31 7.7E-36 275.6 12.7 189 27-222 336-557 (573)
272 PRK13546 teichoic acids export 100.0 8.8E-30 1.9E-34 254.7 22.2 166 43-222 38-228 (264)
273 PRK15134 microcin C ABC transp 100.0 2.7E-30 5.8E-35 283.3 20.2 191 26-221 274-510 (529)
274 TIGR01193 bacteriocin_ABC ABC- 100.0 1.3E-30 2.7E-35 295.3 18.1 187 26-221 472-692 (708)
275 PRK09700 D-allose transporter 100.0 2.6E-30 5.7E-35 282.2 19.9 188 26-221 264-493 (510)
276 cd03248 ABCC_TAP TAP, the Tran 100.0 3.1E-30 6.7E-35 252.3 18.3 183 26-215 10-226 (226)
277 cd03253 ABCC_ATM1_transporter 100.0 3.3E-30 7.2E-35 253.7 18.5 186 28-221 1-219 (236)
278 PRK13545 tagH teichoic acids e 100.0 5.3E-30 1.1E-34 272.7 21.4 202 4-222 1-228 (549)
279 TIGR02324 CP_lyasePhnL phospho 100.0 4.5E-30 9.8E-35 250.8 19.4 180 28-210 2-223 (224)
280 cd03216 ABC_Carb_Monos_I This 100.0 4.2E-30 9E-35 238.9 18.0 149 28-217 1-162 (163)
281 PRK14264 phosphate ABC transpo 100.0 1.2E-29 2.6E-34 259.2 22.2 191 25-221 43-284 (305)
282 TIGR02203 MsbA_lipidA lipid A 100.0 2.2E-30 4.7E-35 286.7 17.6 189 26-221 329-551 (571)
283 cd03228 ABCC_MRP_Like The MRP 100.0 5E-30 1.1E-34 240.3 17.2 159 28-214 1-171 (171)
284 TIGR02633 xylG D-xylose ABC tr 100.0 5.4E-30 1.2E-34 279.1 19.9 194 26-222 256-488 (500)
285 PRK13657 cyclic beta-1,2-gluca 100.0 3.6E-30 7.9E-35 285.8 18.6 188 26-221 333-553 (588)
286 TIGR01846 type_I_sec_HlyB type 100.0 3.7E-30 7.9E-35 290.8 18.5 189 26-221 454-675 (694)
287 COG4604 CeuD ABC-type enteroch 100.0 6.5E-31 1.4E-35 241.9 9.8 185 29-223 16-222 (252)
288 TIGR00958 3a01208 Conjugate Tr 100.0 4.4E-30 9.5E-35 290.4 17.4 187 26-221 477-697 (711)
289 COG1132 MdlB ABC-type multidru 100.0 6.2E-30 1.3E-34 282.7 17.2 190 25-222 326-548 (567)
290 PRK10789 putative multidrug tr 100.0 9.6E-30 2.1E-34 281.2 18.2 189 26-221 312-533 (569)
291 COG4586 ABC-type uncharacteriz 100.0 1.7E-30 3.7E-35 250.1 10.5 184 29-222 39-242 (325)
292 cd03250 ABCC_MRP_domain1 Domai 100.0 1.6E-29 3.5E-34 243.5 17.3 171 28-214 1-204 (204)
293 COG3845 ABC-type uncharacteriz 100.0 2.3E-29 4.9E-34 260.3 19.0 189 26-220 3-223 (501)
294 PRK10762 D-ribose transporter 100.0 2.4E-29 5.1E-34 274.0 20.3 187 26-223 256-481 (501)
295 KOG0055 Multidrug/pheromone ex 100.0 7.3E-30 1.6E-34 288.4 16.6 192 25-223 348-573 (1228)
296 TIGR02204 MsbA_rel ABC transpo 100.0 1.3E-29 2.9E-34 280.7 17.8 189 26-221 336-558 (576)
297 PRK11288 araG L-arabinose tran 100.0 2.5E-29 5.4E-34 273.8 19.5 188 26-223 256-482 (501)
298 TIGR01166 cbiO cobalt transpor 100.0 3.1E-29 6.6E-34 238.8 17.7 160 29-196 7-188 (190)
299 TIGR01192 chvA glucan exporter 100.0 3.1E-29 6.6E-34 277.8 19.2 188 26-221 333-553 (585)
300 COG4172 ABC-type uncharacteriz 100.0 6E-29 1.3E-33 250.2 19.4 194 24-222 273-512 (534)
301 TIGR02857 CydD thiol reductant 100.0 2E-29 4.3E-34 276.6 17.2 177 27-209 320-529 (529)
302 PRK10535 macrolide transporter 100.0 1.1E-28 2.4E-33 275.9 22.8 192 27-223 4-229 (648)
303 cd03223 ABCD_peroxisomal_ALDP 100.0 7.6E-29 1.6E-33 231.2 17.7 156 28-214 1-165 (166)
304 PRK13541 cytochrome c biogenes 100.0 9.1E-29 2E-33 236.6 18.5 171 28-206 2-192 (195)
305 PRK15439 autoinducer 2 ABC tra 100.0 5.9E-29 1.3E-33 271.3 19.4 186 27-223 268-489 (510)
306 PLN03232 ABC transporter C fam 100.0 2.3E-29 5.1E-34 302.9 17.6 189 27-222 1234-1454(1495)
307 PLN03130 ABC transporter C fam 100.0 3.2E-29 6.9E-34 302.3 18.1 190 26-222 1236-1457(1622)
308 cd03290 ABCC_SUR1_N The SUR do 100.0 1E-28 2.2E-33 240.3 18.2 178 29-213 2-217 (218)
309 PRK10938 putative molybdenum t 100.0 1.1E-28 2.3E-33 268.3 18.7 190 25-219 258-485 (490)
310 PRK10522 multidrug transporter 100.0 1.2E-28 2.7E-33 271.2 19.5 187 26-219 321-531 (547)
311 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.1E-28 4.6E-33 242.3 19.1 154 46-211 25-191 (246)
312 KOG0058 Peptide exporter, ABC 100.0 4.6E-29 9.9E-34 268.3 15.4 187 26-221 464-686 (716)
313 PRK15064 ABC transporter ATP-b 100.0 2.4E-28 5.1E-33 268.0 21.1 178 28-222 2-238 (530)
314 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.4E-28 3E-33 271.1 19.3 187 26-218 336-551 (555)
315 COG4618 ArpD ABC-type protease 100.0 6.2E-29 1.4E-33 256.7 15.3 207 8-222 315-556 (580)
316 TIGR02868 CydC thiol reductant 100.0 7.1E-29 1.5E-33 272.2 16.2 165 26-195 333-529 (529)
317 PRK10982 galactose/methyl gala 100.0 2E-28 4.4E-33 266.1 19.2 190 25-222 248-476 (491)
318 PTZ00265 multidrug resistance 100.0 8.6E-29 1.9E-33 295.9 17.2 192 27-221 1165-1447(1466)
319 PTZ00243 ABC transporter; Prov 100.0 1E-28 2.3E-33 297.3 18.0 190 26-222 1307-1529(1560)
320 TIGR00957 MRP_assoc_pro multi 100.0 1.4E-28 3.1E-33 296.5 19.2 190 26-222 1283-1504(1522)
321 cd03291 ABCC_CFTR1 The CFTR su 100.0 9.1E-28 2E-32 242.1 21.5 181 20-221 32-242 (282)
322 PRK11819 putative ABC transpor 100.0 5.6E-28 1.2E-32 266.2 21.4 179 26-221 5-245 (556)
323 TIGR01271 CFTR_protein cystic 100.0 3E-28 6.5E-33 293.0 19.2 189 26-222 1216-1436(1490)
324 PRK15064 ABC transporter ATP-b 100.0 1.2E-27 2.6E-32 262.4 21.3 179 26-221 318-520 (530)
325 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2E-27 4.4E-32 261.7 21.1 179 27-222 4-244 (552)
326 PRK13409 putative ATPase RIL; 100.0 3.6E-27 7.8E-32 260.0 22.3 193 25-235 338-554 (590)
327 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.4E-27 3E-32 237.6 16.4 167 48-220 28-221 (255)
328 COG4608 AppF ABC-type oligopep 99.9 2.5E-27 5.4E-32 230.9 16.8 169 27-222 4-195 (268)
329 PRK15177 Vi polysaccharide exp 99.9 3.9E-27 8.4E-32 228.5 18.1 173 29-222 2-188 (213)
330 COG4674 Uncharacterized ABC-ty 99.9 6.3E-28 1.4E-32 221.9 11.7 190 26-222 4-231 (249)
331 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 3.6E-27 7.8E-32 214.7 16.4 134 29-214 2-144 (144)
332 COG0396 sufC Cysteine desulfur 99.9 3.1E-26 6.8E-31 216.4 22.8 201 26-235 2-238 (251)
333 PRK11819 putative ABC transpor 99.9 6.7E-27 1.4E-31 257.7 20.7 179 26-220 323-527 (556)
334 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.2E-26 2.5E-31 255.7 21.9 179 26-220 321-525 (552)
335 PTZ00265 multidrug resistance 99.9 3.2E-27 6.9E-32 282.5 18.8 180 27-211 382-654 (1466)
336 cd03222 ABC_RNaseL_inhibitor T 99.9 7.1E-27 1.5E-31 219.5 17.0 142 47-233 26-170 (177)
337 KOG0059 Lipid exporter ABCA1 a 99.9 2.1E-27 4.6E-32 272.9 15.7 200 26-234 563-791 (885)
338 PRK10636 putative ABC transpor 99.9 1.1E-26 2.4E-31 259.3 20.1 180 25-221 310-512 (638)
339 KOG0055 Multidrug/pheromone ex 99.9 4.7E-27 1E-31 265.8 15.9 190 25-221 985-1208(1228)
340 TIGR00954 3a01203 Peroxysomal 99.9 3.4E-26 7.5E-31 256.1 19.1 171 26-213 450-655 (659)
341 KOG0056 Heavy metal exporter H 99.9 1.4E-26 3E-31 237.0 14.1 187 25-221 535-756 (790)
342 PRK10636 putative ABC transpor 99.9 9.5E-26 2.1E-30 251.7 21.1 176 28-221 2-231 (638)
343 cd00267 ABC_ATPase ABC (ATP-bi 99.9 7.8E-26 1.7E-30 208.8 16.9 144 30-214 2-157 (157)
344 cd03238 ABC_UvrA The excision 99.9 6.5E-26 1.4E-30 212.8 16.4 153 29-219 10-170 (176)
345 PRK11147 ABC transporter ATPas 99.9 1.1E-25 2.4E-30 251.4 21.2 180 25-220 317-522 (635)
346 COG4619 ABC-type uncharacteriz 99.9 1.1E-26 2.4E-31 208.8 10.0 170 41-215 15-212 (223)
347 COG4167 SapF ABC-type antimicr 99.9 1.3E-25 2.8E-30 204.5 16.4 206 7-222 3-235 (267)
348 PLN03073 ABC transporter F fam 99.9 1.4E-25 3E-30 251.8 19.5 178 26-221 507-709 (718)
349 PLN03232 ABC transporter C fam 99.9 8.5E-26 1.8E-30 272.3 18.6 181 26-222 613-824 (1495)
350 COG4172 ABC-type uncharacteriz 99.9 2.1E-25 4.6E-30 224.7 18.2 194 27-222 6-243 (534)
351 COG1134 TagH ABC-type polysacc 99.9 4.7E-25 1E-29 211.0 19.3 176 43-235 41-241 (249)
352 PRK11147 ABC transporter ATPas 99.9 3.3E-25 7.2E-30 247.6 21.2 178 27-221 3-238 (635)
353 PLN03130 ABC transporter C fam 99.9 2E-25 4.3E-30 269.5 19.1 179 27-222 614-824 (1622)
354 COG1101 PhnK ABC-type uncharac 99.9 4E-25 8.8E-30 206.4 14.9 203 29-235 3-251 (263)
355 TIGR00957 MRP_assoc_pro multi 99.9 5.3E-25 1.2E-29 265.7 19.7 180 27-222 636-846 (1522)
356 PRK13409 putative ATPase RIL; 99.9 2.3E-25 5E-30 245.6 14.8 175 32-211 78-286 (590)
357 COG4107 PhnK ABC-type phosphon 99.9 1.3E-24 2.7E-29 196.6 13.7 190 27-222 6-237 (258)
358 COG4133 CcmA ABC-type transpor 99.9 4.1E-25 8.8E-30 202.8 10.0 145 51-197 33-192 (209)
359 COG5265 ATM1 ABC-type transpor 99.9 6.2E-25 1.3E-29 222.7 11.8 187 25-221 260-481 (497)
360 COG0488 Uup ATPase components 99.9 5.4E-24 1.2E-28 229.7 18.5 179 26-221 2-235 (530)
361 KOG0054 Multidrug resistance-a 99.9 2.8E-24 6E-29 248.6 17.2 191 25-222 1136-1358(1381)
362 TIGR01271 CFTR_protein cystic 99.9 5.9E-24 1.3E-28 256.1 19.5 164 42-222 439-632 (1490)
363 PLN03073 ABC transporter F fam 99.9 4.6E-24 1E-28 239.5 13.9 190 25-221 175-426 (718)
364 COG4136 ABC-type uncharacteriz 99.9 2.5E-23 5.5E-28 183.9 14.5 167 28-196 3-196 (213)
365 PTZ00243 ABC transporter; Prov 99.9 3E-23 6.5E-28 250.3 18.5 165 42-222 673-866 (1560)
366 cd03270 ABC_UvrA_I The excisio 99.9 1.3E-22 2.9E-27 198.5 17.6 95 122-219 118-226 (226)
367 cd03278 ABC_SMC_barmotin Barmo 99.9 2E-23 4.3E-28 200.0 11.3 156 47-212 23-191 (197)
368 cd03271 ABC_UvrA_II The excisi 99.9 1.7E-22 3.7E-27 200.7 16.8 125 95-221 118-261 (261)
369 KOG0054 Multidrug resistance-a 99.9 2.9E-22 6.4E-27 231.9 18.9 183 25-223 516-728 (1381)
370 cd03279 ABC_sbcCD SbcCD and ot 99.9 8.2E-22 1.8E-26 191.2 15.9 178 27-213 5-210 (213)
371 cd03272 ABC_SMC3_euk Eukaryoti 99.9 4.8E-22 1E-26 196.5 14.3 161 47-210 24-234 (243)
372 COG4778 PhnL ABC-type phosphon 99.9 1.8E-22 3.9E-27 182.0 9.9 180 28-211 5-227 (235)
373 COG1129 MglA ABC-type sugar tr 99.9 2.2E-21 4.7E-26 205.0 19.4 189 24-222 260-486 (500)
374 PF00005 ABC_tran: ABC transpo 99.9 5.6E-22 1.2E-26 178.3 12.9 125 30-164 1-137 (137)
375 cd03273 ABC_SMC2_euk Eukaryoti 99.9 6.9E-22 1.5E-26 196.5 13.6 161 46-210 25-242 (251)
376 COG4138 BtuD ABC-type cobalami 99.9 6.9E-23 1.5E-27 185.5 5.1 171 48-223 27-218 (248)
377 cd03240 ABC_Rad50 The catalyti 99.9 1.1E-21 2.4E-26 189.0 12.1 161 46-214 22-200 (204)
378 cd03274 ABC_SMC4_euk Eukaryoti 99.9 1.7E-22 3.7E-27 195.7 5.8 166 27-211 5-204 (212)
379 COG0488 Uup ATPase components 99.9 1E-20 2.2E-25 204.4 18.9 181 24-220 318-519 (530)
380 COG4178 ABC-type uncharacteriz 99.8 8.4E-20 1.8E-24 196.6 14.9 172 25-211 390-588 (604)
381 cd03275 ABC_SMC1_euk Eukaryoti 99.8 1.1E-19 2.4E-24 180.3 12.4 73 139-213 159-235 (247)
382 cd03276 ABC_SMC6_euk Eukaryoti 99.8 3E-19 6.5E-24 171.3 13.1 154 47-211 22-190 (198)
383 COG4615 PvdE ABC-type sideroph 99.8 1.2E-19 2.7E-24 182.7 5.3 188 26-220 321-531 (546)
384 COG3845 ABC-type uncharacteriz 99.8 6.7E-18 1.5E-22 175.5 18.1 194 25-223 255-489 (501)
385 PRK00635 excinuclease ABC subu 99.8 9.2E-18 2E-22 199.6 20.2 98 123-222 791-902 (1809)
386 KOG0927 Predicted transporter 99.8 9.1E-19 2E-23 182.8 8.7 182 24-220 386-590 (614)
387 COG4170 SapD ABC-type antimicr 99.8 1.9E-18 4.2E-23 160.9 9.3 174 47-222 34-244 (330)
388 PRK00349 uvrA excinuclease ABC 99.7 1.9E-17 4E-22 189.5 17.4 100 121-222 810-923 (943)
389 KOG2355 Predicted ABC-type tra 99.7 1E-17 2.2E-22 155.8 12.1 191 25-221 11-232 (291)
390 COG1245 Predicted ATPase, RNas 99.7 5.2E-17 1.1E-21 166.5 14.8 179 25-219 340-537 (591)
391 cd03239 ABC_SMC_head The struc 99.7 1E-16 2.2E-21 151.1 14.2 73 137-211 96-172 (178)
392 KOG0927 Predicted transporter 99.7 3E-17 6.4E-22 171.6 11.3 190 26-222 74-305 (614)
393 TIGR00630 uvra excinuclease AB 99.7 2.4E-16 5.3E-21 180.0 19.2 100 121-222 808-921 (924)
394 KOG0060 Long-chain acyl-CoA tr 99.7 4.4E-16 9.5E-21 164.0 15.8 178 24-214 430-644 (659)
395 cd03277 ABC_SMC5_euk Eukaryoti 99.7 3.6E-16 7.7E-21 151.6 13.6 75 138-214 129-211 (213)
396 PF01061 ABC2_membrane: ABC-2 99.7 8.1E-19 1.8E-23 167.8 -5.4 180 309-490 1-210 (210)
397 cd03280 ABC_MutS2 MutS2 homolo 99.7 2.9E-16 6.3E-21 150.8 12.1 77 139-219 95-172 (200)
398 KOG0066 eIF2-interacting prote 99.7 2E-16 4.4E-21 160.9 11.3 176 23-213 582-778 (807)
399 KOG0062 ATPase component of AB 99.7 5.7E-16 1.2E-20 161.2 11.8 179 24-217 359-559 (582)
400 KOG0062 ATPase component of AB 99.6 1.5E-15 3.3E-20 158.0 11.9 172 25-210 78-269 (582)
401 COG1245 Predicted ATPase, RNas 99.6 1.9E-15 4E-20 155.2 10.4 166 46-219 100-294 (591)
402 cd03241 ABC_RecN RecN ATPase i 99.6 7E-15 1.5E-19 148.3 13.6 72 138-212 173-248 (276)
403 cd03227 ABC_Class2 ABC-type Cl 99.6 9.2E-15 2E-19 135.7 12.6 72 138-211 80-155 (162)
404 cd03283 ABC_MutS-like MutS-lik 99.6 5.4E-15 1.2E-19 141.9 8.8 122 47-197 26-150 (199)
405 PRK00349 uvrA excinuclease ABC 99.5 2.7E-14 5.9E-19 163.7 12.8 96 124-222 472-581 (943)
406 cd03243 ABC_MutS_homologs The 99.5 3.1E-14 6.6E-19 137.0 10.0 144 47-221 30-174 (202)
407 cd03285 ABC_MSH2_euk MutS2 hom 99.5 2.3E-14 4.9E-19 139.8 9.1 149 28-220 18-175 (222)
408 TIGR00630 uvra excinuclease AB 99.5 7.2E-14 1.6E-18 159.9 12.5 95 125-222 471-579 (924)
409 COG0178 UvrA Excinuclease ATPa 99.5 1.9E-13 4.1E-18 149.1 9.9 82 139-222 826-915 (935)
410 TIGR02858 spore_III_AA stage I 99.4 4.3E-13 9.4E-18 134.1 11.6 135 49-221 114-264 (270)
411 PRK00635 excinuclease ABC subu 99.4 3.8E-13 8.2E-18 160.8 12.0 96 125-222 460-568 (1809)
412 KOG0064 Peroxisomal long-chain 99.4 5E-13 1.1E-17 139.4 9.2 156 28-198 482-672 (728)
413 KOG0066 eIF2-interacting prote 99.4 1.7E-13 3.7E-18 139.8 4.9 185 25-217 262-489 (807)
414 cd03242 ABC_RecF RecF is a rec 99.4 3.2E-12 6.9E-17 128.6 14.1 71 139-215 187-269 (270)
415 COG2401 ABC-type ATPase fused 99.4 1.2E-12 2.6E-17 133.3 10.3 163 43-215 397-587 (593)
416 cd03282 ABC_MSH4_euk MutS4 hom 99.3 9E-12 2E-16 119.9 10.9 131 28-196 17-152 (204)
417 cd03284 ABC_MutS1 MutS1 homolo 99.3 6.9E-12 1.5E-16 121.9 9.4 142 47-221 31-176 (216)
418 smart00534 MUTSac ATPase domai 99.3 5E-12 1.1E-16 119.9 5.4 65 139-205 64-130 (185)
419 cd03281 ABC_MSH5_euk MutS5 hom 99.2 2.3E-11 5.1E-16 117.9 9.6 120 47-197 30-156 (213)
420 KOG0063 RNAse L inhibitor, ABC 99.2 1.1E-10 2.4E-15 119.6 10.1 148 50-210 371-531 (592)
421 PF02463 SMC_N: RecF/RecN/SMC 99.1 2.1E-10 4.6E-15 111.6 8.4 86 121-210 123-212 (220)
422 TIGR00634 recN DNA repair prot 99.0 4.4E-10 9.6E-15 124.3 9.0 70 139-211 444-517 (563)
423 PHA02562 46 endonuclease subun 99.0 5.1E-10 1.1E-14 124.1 8.9 73 139-215 472-555 (562)
424 TIGR01069 mutS2 MutS2 family p 99.0 4E-10 8.7E-15 127.9 7.9 60 139-199 389-449 (771)
425 PRK10869 recombination and rep 99.0 1.2E-09 2.7E-14 120.1 9.6 70 139-211 434-507 (553)
426 TIGR03062 pip_yhgE_Cterm YhgE/ 99.0 2.7E-09 5.8E-14 102.9 10.8 117 372-492 58-176 (208)
427 PTZ00132 GTP-binding nuclear p 99.0 7.3E-10 1.6E-14 107.4 6.6 44 140-183 157-205 (215)
428 TIGR00618 sbcc exonuclease Sbc 99.0 2E-09 4.4E-14 127.3 10.4 73 138-211 953-1035(1042)
429 cd03287 ABC_MSH3_euk MutS3 hom 98.9 1.1E-08 2.4E-13 99.7 13.6 133 28-197 19-156 (222)
430 TIGR01247 drrB daunorubicin re 98.9 5.8E-09 1.3E-13 102.6 11.9 120 370-491 86-207 (236)
431 KOG0063 RNAse L inhibitor, ABC 98.9 2.8E-09 6E-14 109.4 8.2 162 46-210 100-287 (592)
432 COG3910 Predicted ATPase [Gene 98.9 1E-08 2.2E-13 94.9 10.1 154 47-212 38-204 (233)
433 PRK08533 flagellar accessory p 98.8 6.4E-08 1.4E-12 95.1 14.3 59 152-210 116-184 (230)
434 PRK00409 recombination and DNA 98.8 6.2E-09 1.3E-13 118.6 6.9 76 139-218 394-470 (782)
435 PRK03918 chromosome segregatio 98.8 1.3E-08 2.7E-13 118.9 9.4 72 138-211 791-868 (880)
436 TIGR00025 Mtu_efflux ABC trans 98.8 5.8E-08 1.3E-12 95.3 11.8 128 361-491 67-199 (232)
437 cd01124 KaiC KaiC is a circadi 98.7 2.9E-08 6.2E-13 93.7 8.5 69 143-211 85-164 (187)
438 cd01120 RecA-like_NTPases RecA 98.7 1.8E-08 3.9E-13 92.0 6.8 59 139-197 71-139 (165)
439 cd03286 ABC_MSH6_euk MutS6 hom 98.7 6.3E-08 1.4E-12 94.1 10.2 59 139-197 95-155 (218)
440 PRK01156 chromosome segregatio 98.7 6.8E-08 1.5E-12 113.0 12.2 73 137-211 803-884 (895)
441 cd01131 PilT Pilus retraction 98.7 7.6E-08 1.6E-12 92.4 9.5 122 46-210 1-122 (198)
442 PRK10246 exonuclease subunit S 98.7 5.5E-08 1.2E-12 114.9 10.0 60 137-196 951-1018(1047)
443 COG0178 UvrA Excinuclease ATPa 98.6 8.5E-08 1.9E-12 105.7 9.7 83 139-223 485-574 (935)
444 PRK07721 fliI flagellum-specif 98.6 6.9E-07 1.5E-11 95.3 15.8 154 49-222 161-339 (438)
445 TIGR02788 VirB11 P-type DNA tr 98.6 1.7E-07 3.6E-12 96.2 10.6 132 47-222 145-277 (308)
446 PRK13695 putative NTPase; Prov 98.6 1.8E-08 3.8E-13 94.6 2.9 74 139-219 82-157 (174)
447 cd01128 rho_factor Transcripti 98.6 7E-08 1.5E-12 95.7 7.0 68 141-215 143-211 (249)
448 TIGR03861 phenyl_ABC_PedC alco 98.6 8.8E-07 1.9E-11 88.1 14.9 117 371-488 99-220 (253)
449 TIGR00606 rad50 rad50. This fa 98.6 6.7E-08 1.4E-12 116.9 7.5 66 136-202 1200-1276(1311)
450 cd01125 repA Hexameric Replica 98.6 2.2E-07 4.8E-12 91.7 9.4 131 47-196 2-160 (239)
451 TIGR01291 nodJ ABC-2 type tran 98.6 4.8E-07 1E-11 90.1 11.4 118 372-491 100-219 (253)
452 PRK00064 recF recombination pr 98.5 2.6E-07 5.7E-12 96.8 8.8 72 139-215 277-359 (361)
453 TIGR02168 SMC_prok_B chromosom 98.5 1.4E-07 3.1E-12 113.0 7.2 70 139-211 1093-1166(1179)
454 TIGR01248 drrC daunorubicin re 98.4 1.8E-06 3.9E-11 79.3 10.8 128 356-486 15-146 (152)
455 PRK02224 chromosome segregatio 98.4 9.3E-07 2E-11 103.3 9.0 72 138-211 784-868 (880)
456 TIGR00611 recf recF protein. A 98.3 7.1E-07 1.5E-11 93.5 6.9 55 139-196 279-342 (365)
457 PRK06067 flagellar accessory p 98.3 3.3E-06 7.1E-11 83.0 10.0 72 139-210 104-186 (234)
458 TIGR02169 SMC_prok_A chromosom 98.3 1.2E-06 2.6E-11 105.2 8.0 70 139-211 1078-1151(1164)
459 PRK14079 recF recombination pr 98.2 2.6E-06 5.6E-11 88.9 8.0 70 139-217 267-345 (349)
460 TIGR01420 pilT_fam pilus retra 98.2 1.2E-05 2.7E-10 83.7 11.8 121 46-209 122-242 (343)
461 smart00382 AAA ATPases associa 98.1 5.4E-05 1.2E-09 66.2 13.4 55 139-193 64-124 (148)
462 cd00820 PEPCK_HprK Phosphoenol 98.1 2.7E-06 5.8E-11 73.0 4.7 68 29-113 4-74 (107)
463 PRK15066 inner membrane transp 98.1 1.9E-05 4.1E-10 78.8 11.7 118 371-490 101-220 (257)
464 PF13304 AAA_21: AAA domain; P 98.0 1.2E-05 2.5E-10 78.1 7.9 58 139-196 240-300 (303)
465 PRK06793 fliI flagellum-specif 98.0 8E-06 1.7E-10 86.7 6.7 134 49-220 159-305 (432)
466 COG0419 SbcC ATPase involved i 98.0 2.4E-05 5.1E-10 91.7 9.5 73 139-213 819-899 (908)
467 cd01130 VirB11-like_ATPase Typ 97.9 9E-05 2E-09 70.3 11.6 117 47-207 26-145 (186)
468 COG0842 ABC-type multidrug tra 97.9 5.4E-05 1.2E-09 75.2 10.5 118 374-492 131-251 (286)
469 TIGR02655 circ_KaiC circadian 97.9 2.4E-06 5.2E-11 93.0 -0.3 62 139-210 119-190 (484)
470 PRK13830 conjugal transfer pro 97.7 7E-05 1.5E-09 86.6 7.3 69 150-220 649-727 (818)
471 PLN03210 Resistant to P. syrin 97.7 0.00016 3.5E-09 87.0 10.2 138 47-209 208-348 (1153)
472 PRK05399 DNA mismatch repair p 97.6 0.0002 4.4E-09 83.0 10.4 62 140-205 673-738 (854)
473 TIGR02680 conserved hypothetic 97.6 8.4E-05 1.8E-09 90.1 7.1 54 139-195 1251-1316(1353)
474 PF12698 ABC2_membrane_3: ABC- 97.6 1.7E-05 3.6E-10 80.8 0.0 128 357-490 184-318 (344)
475 PF00488 MutS_V: MutS domain V 97.5 0.0011 2.4E-08 65.3 12.0 57 140-196 109-167 (235)
476 TIGR00152 dephospho-CoA kinase 97.5 0.00011 2.3E-09 69.8 4.6 71 139-211 61-132 (188)
477 TIGR03881 KaiC_arch_4 KaiC dom 97.5 8.5E-05 1.8E-09 72.6 3.9 58 153-210 121-188 (229)
478 cd00009 AAA The AAA+ (ATPases 97.4 0.0011 2.4E-08 58.4 10.2 54 142-196 73-131 (151)
479 cd02023 UMPK Uridine monophosp 97.4 0.00015 3.3E-09 69.2 4.0 22 49-70 2-23 (198)
480 PRK06995 flhF flagellar biosyn 97.4 0.00054 1.2E-08 74.0 8.3 24 47-70 257-280 (484)
481 PRK13764 ATPase; Provisional 97.3 0.00095 2.1E-08 73.9 10.1 63 150-221 321-400 (602)
482 PRK14088 dnaA chromosomal repl 97.3 0.00094 2E-08 72.0 9.8 70 152-223 193-265 (440)
483 PRK04296 thymidine kinase; Pro 97.3 0.0014 3E-08 62.5 9.3 64 152-221 77-149 (190)
484 PF09818 ABC_ATPase: Predicted 97.1 0.0045 9.7E-08 65.3 12.0 72 139-211 326-413 (448)
485 PTZ00454 26S protease regulato 97.1 0.004 8.8E-08 66.1 11.6 69 148-223 233-318 (398)
486 TIGR02524 dot_icm_DotB Dot/Icm 97.1 0.0022 4.8E-08 67.1 9.0 121 46-207 134-257 (358)
487 cd01122 GP4d_helicase GP4d_hel 97.0 0.0022 4.7E-08 64.4 8.6 52 143-194 128-190 (271)
488 TIGR00416 sms DNA repair prote 97.0 0.002 4.4E-08 69.5 8.6 60 152-211 169-245 (454)
489 PF13558 SbcCD_C: Putative exo 96.9 0.0022 4.7E-08 53.4 6.3 28 153-180 63-90 (90)
490 TIGR01026 fliI_yscN ATPase Fli 96.9 0.0062 1.4E-07 65.3 10.5 59 159-221 276-343 (440)
491 PRK13891 conjugal transfer pro 96.8 0.0016 3.5E-08 75.7 6.3 51 146-196 680-731 (852)
492 PRK06893 DNA replication initi 96.8 0.0049 1.1E-07 60.4 8.7 71 152-223 90-163 (229)
493 PF13555 AAA_29: P-loop contai 96.8 0.0011 2.3E-08 51.1 3.0 23 47-69 24-46 (62)
494 PRK00454 engB GTP-binding prot 96.7 0.01 2.2E-07 56.0 9.6 42 139-184 151-195 (196)
495 PF13175 AAA_15: AAA ATPase do 96.6 0.0044 9.5E-08 65.7 7.4 58 139-196 345-413 (415)
496 cd01121 Sms Sms (bacterial rad 96.6 0.0085 1.8E-07 63.1 9.1 60 152-211 157-233 (372)
497 TIGR01243 CDC48 AAA family ATP 96.6 0.0077 1.7E-07 69.2 9.4 46 151-196 269-325 (733)
498 cd01881 Obg_like The Obg-like 96.6 0.0018 4E-08 59.6 3.5 35 139-177 107-141 (176)
499 cd01129 PulE-GspE PulE/GspE Th 96.5 0.025 5.3E-07 56.8 11.0 53 146-207 142-194 (264)
500 TIGR03880 KaiC_arch_3 KaiC dom 96.5 0.015 3.3E-07 56.6 9.3 59 152-210 106-177 (224)
No 1
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7e-93 Score=794.98 Aligned_cols=512 Identities=43% Similarity=0.698 Sum_probs=467.7
Q ss_pred CCCccccccceEEEEEeEEEEEe--------CCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEE
Q 042733 16 KRGMVLLFEPHYISLNEIVYSVD--------MPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRN 78 (531)
Q Consensus 16 ~~~~~~~~~~~~l~~~~ls~~~~--------~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~ 78 (531)
++++..|..+..++.+||.+..+ .+++++|+||+|.++|| ||||||||++|+||...|.++|+
T Consensus 770 ~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gd 849 (1391)
T KOG0065|consen 770 KNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGD 849 (1391)
T ss_pred cccccCCCccccccccceEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeE
Confidence 34666665555555555544432 23458999999999999 99999999999999999999999
Q ss_pred EEEcCcccchhhhcceEEEEecCCCCCCCCcHHhH--------------HHHHHHHHHHHHHhcCCchhhhccH------
Q 042733 79 ITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDF--------------THCLYMFIEEGMELVELNPFRQALF------ 138 (531)
Q Consensus 79 i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~--------------~~~~~~~~~~~l~~l~l~~~~~~~~------ 138 (531)
|.++|.|.++..++|.+|||.|+|.|.+.+||+|. .+++.+.++++++.++|++++|..+
T Consensus 850 i~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~G 929 (1391)
T KOG0065|consen 850 ILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSG 929 (1391)
T ss_pred EEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCC
Confidence 99999998878899999999999999999999997 3455588999999999999999988
Q ss_pred ---HHHHHHHHHHHHhhCC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 139 ---EQRKRLTVAVEFVANP-SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 139 ---GerqRv~iA~aL~~~p-~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
+||||++||.+|+.+| .||+|||||||||+.++..+++.+|+++++|+||+||+|||+.++++.||++++|++||+
T Consensus 930 Ls~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGq 1009 (1391)
T KOG0065|consen 930 LSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQ 1009 (1391)
T ss_pred CCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCe
Confidence 4999999999999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCchhHHHHHHhhcCcccCCCCCCccchhhhhhccccccccCcchHHHhhccHHHHHHHHHHHHhCCCCCC-
Q 042733 215 EISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFGVDFSDIYRNSELYKRAKAVITELSKPAPV- 293 (531)
Q Consensus 215 ~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~~n~ad~~~~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~- 293 (531)
+||.||+++.++.+++||+++++++ |+...|||||++|+++...+.....||++.|++|+.+++.++++++++.+.+.
T Consensus 1010 tVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~ 1088 (1391)
T KOG0065|consen 1010 TVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGF 1088 (1391)
T ss_pred EEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccC
Confidence 9999999998889999999998874 77767999999999988777777889999999999999999999999988877
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHHHHhh----------------------------cchHHHHHHHHHHHHHHHHHHH
Q 042733 294 SKSLRFSTQYSQSICTKLFAWSWKLAQQRW----------------------------TKQQHLFNVMVSMYTAVLFLLV 345 (531)
Q Consensus 294 ~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~----------------------------~~~~~~~~~~g~lf~~~~~~~~ 345 (531)
..+...+++|++|+|.|++.++||+++.|| .+.++++|.+|++|+++++.+.
T Consensus 1089 ~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~ 1168 (1391)
T KOG0065|consen 1089 STDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGP 1168 (1391)
T ss_pred CcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhh
Confidence 666777888999999999999999999998 5678899999999999999888
Q ss_pred HhhhhHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHH
Q 042733 346 QNAGSLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFY 425 (531)
Q Consensus 346 ~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~ 425 (531)
.+.....+.+..||.+++||+++|+||+.+|++|++++|+|+.++++++|.+++|+|+||.+++.+|++||+.+++..++
T Consensus 1169 ~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lY 1248 (1391)
T KOG0065|consen 1169 NNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLY 1248 (1391)
T ss_pred hhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHH
Confidence 77776778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhccCceeee------
Q 042733 426 FTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFLHHSLEI------ 497 (531)
Q Consensus 426 ~~~~~~~i~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~~~~~~~------ 497 (531)
.+++|+|+.+++||.++|..+++++++++.+|||+++|++.||.|| ||| +||+.|.+++++..++++.+..|
T Consensus 1249 f~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~ 1328 (1391)
T KOG0065|consen 1249 FTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMN 1328 (1391)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCcc
Confidence 9999999999999999999999999999999999999999999999 999 99999999999999999887766
Q ss_pred -ecCCCCccHHHHHHhhcC----CccccceeeEEEE
Q 042733 498 -YRTGQMKQFNNFFTNYFG----FRHDFVGIVAVVV 528 (531)
Q Consensus 498 -~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 528 (531)
.+|+++.+|++|++.++| |.+|...+.+...
T Consensus 1329 ~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~ 1364 (1391)
T KOG0065|consen 1329 YFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVY 1364 (1391)
T ss_pred ccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEE
Confidence 234566899999999999 9988877666543
No 2
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=9.8e-90 Score=813.89 Aligned_cols=512 Identities=51% Similarity=0.829 Sum_probs=453.7
Q ss_pred CccccccceEEEEEeEEEEEeCC-----------CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEE
Q 042733 18 GMVLLFEPHYISLNEIVYSVDMP-----------QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITR 77 (531)
Q Consensus 18 ~~~~~~~~~~l~~~~ls~~~~~~-----------~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G 77 (531)
++.+|..+..++|+||+|.++.+ ++++|+|+|+.++|| |||||||||+|+|+.++|.++|
T Consensus 858 ~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G 937 (1470)
T PLN03140 858 GMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG 937 (1470)
T ss_pred ccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccc
Confidence 45556677899999999998632 236999999999888 9999999999999987777899
Q ss_pred EEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHH--------------HHHHHHHHHHHHhcCCchhhhccH-----
Q 042733 78 NITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFT--------------HCLYMFIEEGMELVELNPFRQALF----- 138 (531)
Q Consensus 78 ~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~--------------~~~~~~~~~~l~~l~l~~~~~~~~----- 138 (531)
++.++|.+.....+++.+|||+|+|.+++.+||+|+. .++.+.++++++.++|.+++|+.+
T Consensus 938 ~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~ 1017 (1470)
T PLN03140 938 DIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGV 1017 (1470)
T ss_pred eEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCC
Confidence 9999998765555677899999999999999999982 122345888999999998877652
Q ss_pred -----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCc
Q 042733 139 -----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVG 213 (531)
Q Consensus 139 -----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G 213 (531)
||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+++|
T Consensus 1018 ~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG 1097 (1470)
T PLN03140 1018 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1097 (1470)
T ss_pred CCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCC
Confidence 899999999999999999999999999999999999999999998899999999999977889999999998668
Q ss_pred eeeecCCCCCCchhHHHHHHhhcCcccCCCCCCccchhhhhhccccccccCcchHHHhhccHHHHHHHHHHHHhCCCCCC
Q 042733 214 QEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFGVDFSDIYRNSELYKRAKAVITELSKPAPV 293 (531)
Q Consensus 214 ~~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~~n~ad~~~~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 293 (531)
+++++|++++.++++.+||++++|.+.||+++|||||++|+++...+.....|+.+.|++|+.+++..+.++++..+.+.
T Consensus 1098 ~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~ 1177 (1470)
T PLN03140 1098 QVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPG 1177 (1470)
T ss_pred EEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCC
Confidence 99999998776678999999987777799999999999999876544444568999999999988877777766655544
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHHHHhh----------------------------cc---hHHHHHHHHHHHHHHHH
Q 042733 294 SKSLRFSTQYSQSICTKLFAWSWKLAQQRW----------------------------TK---QQHLFNVMVSMYTAVLF 342 (531)
Q Consensus 294 ~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~----------------------------~~---~~~~~~~~g~lf~~~~~ 342 (531)
.++....++|+.++++|++.|++|+++.+| ++ .++++++.|++|+++++
T Consensus 1178 ~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~ 1257 (1470)
T PLN03140 1178 ASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLF 1257 (1470)
T ss_pred ccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHH
Confidence 444444567899999999999999999877 12 35788899999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHH
Q 042733 343 LLVQNAGSLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFI 422 (531)
Q Consensus 343 ~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~ 422 (531)
.++.++++++|.+..||+||+|||++|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++++||+|++++++.
T Consensus 1258 ~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~ 1337 (1470)
T PLN03140 1258 VGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFS 1337 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhccCceeeeecC
Q 042733 423 FFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFLHHSLEIYRT 500 (531)
Q Consensus 423 ~~~~~~~~~~i~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~~~~~~~~~~ 500 (531)
.++++++|+++++++||.++|+.+++++++++++|+||++|+++||+|| |+| +||++|+++|++.|||++.+.+|-++
T Consensus 1338 ~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~ 1417 (1470)
T PLN03140 1338 FLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVP 1417 (1470)
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCC
Confidence 9999999999999999999999999999999999999999999999999 999 99999999999999999877655223
Q ss_pred C--CCccHHHHHHhhcCCccccceeeEEEEe
Q 042733 501 G--QMKQFNNFFTNYFGFRHDFVGIVAVVVG 529 (531)
Q Consensus 501 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (531)
+ ++.++.+|++.+|||+++++|.++++++
T Consensus 1418 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~ 1448 (1470)
T PLN03140 1418 GGAPDPTIKWYIQDHYGYDPDFMGPVAAVLV 1448 (1470)
T ss_pred CCCCCCcHHHHHHHhcCcCcccccchhhhHH
Confidence 3 2368899999999999999999888764
No 3
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.4e-83 Score=702.20 Aligned_cols=491 Identities=25% Similarity=0.357 Sum_probs=414.7
Q ss_pred cceEEEEEeEEEEEeCC---CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc-eEEEEEEEcCcccchhh
Q 042733 24 EPHYISLNEIVYSVDMP---QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG-YITRNITVSGYPEKQET 90 (531)
Q Consensus 24 ~~~~l~~~~ls~~~~~~---~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g-~~~G~i~~~g~~~~~~~ 90 (531)
.++.++|+|+++..+.+ .+++|+||||.++|| ||||||||++|+|+.++| ..+|+|.+||++.....
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~ 101 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRS 101 (613)
T ss_pred ccceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhh
Confidence 46789999999998765 378999999999999 999999999999998764 78999999998777778
Q ss_pred hcceEEEEecCCCCCCCCcHHhH--------------HHHHHHHHHHHHHhcCCchhhhccH----------HHHHHHHH
Q 042733 91 FARILGYCEQNDIHSPHDTLYDF--------------THCLYMFIEEGMELVELNPFRQALF----------EQRKRLTV 146 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~--------------~~~~~~~~~~~l~~l~l~~~~~~~~----------GerqRv~i 146 (531)
+++.+|||.|+|.++|++||+|+ ..+++.+++++++.+||.+++|+.+ ||||||+|
T Consensus 102 ~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsi 181 (613)
T KOG0061|consen 102 FRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSI 181 (613)
T ss_pred hhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHH
Confidence 89999999999999999999998 3567789999999999999999998 69999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCCch
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSI 226 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~~~ 226 (531)
|.+|++||++|+|||||||||+.++.++++.|++++++|+|||+++|||+.++++.||++++|.+ |+++|+|++ +
T Consensus 182 a~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~G~~----~ 256 (613)
T KOG0061|consen 182 ALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYSGSP----R 256 (613)
T ss_pred HHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEecCH----H
Confidence 99999999999999999999999999999999999999999999999999999999999999996 999999997 5
Q ss_pred hHHHHHHhhcCcccCCCCCCccchhhhhhccc-cccccCcchHHHhhc------cHHHHHHHHHHHHhCCCCCCCCCCCC
Q 042733 227 HLISYFEKIFGVSKIKDGYNLATWLLEVTALS-QERAFGVDFSDIYRN------SELYKRAKAVITELSKPAPVSKSLRF 299 (531)
Q Consensus 227 ~~~~~f~~~~~~~~~~~~~n~ad~~~~v~~~~-~~~~~~~~~~~~~~~------s~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (531)
++.+||++.+ . +||++.||+||++|+.+.. ..+.. .+..+.++. .+...+... .......... ..
T Consensus 257 ~~~~ff~~~G-~-~~P~~~Npadf~l~l~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~ 328 (613)
T KOG0061|consen 257 ELLEFFSSLG-F-PCPELENPADFLLDLLSVDSGTREL-EEAVRIAKLINKFSQTDNLKKTLE---ALEKSLSTSK--KV 328 (613)
T ss_pred HHHHHHHhCC-C-CCCCcCChHHHHHHHHccCCCchhH-HhHHHHHHHhhhccccchhhhhHH---HHhhhccccc--cc
Confidence 7889999985 3 5999999999999998742 10000 001111110 111111100 0000000000 11
Q ss_pred CCcccccHHHHHHHHHHHHHHHhh----------------------------cchHHHHHHHHHHHHHHHHHHHHhhhhH
Q 042733 300 STQYSQSICTKLFAWSWKLAQQRW----------------------------TKQQHLFNVMVSMYTAVLFLLVQNAGSL 351 (531)
Q Consensus 300 ~~~~~~~~~~q~~~l~~R~~~~~~----------------------------~~~~~~~~~~g~lf~~~~~~~~~~~~~~ 351 (531)
+.....+||.|++.+.+|.++..+ ++..+++++.|++|+.+.+..+..+.+.
T Consensus 329 ~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~ 408 (613)
T KOG0061|consen 329 EIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGA 408 (613)
T ss_pred ccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 111278999999999999887533 4566778999999999999888888888
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHHHHHHH
Q 042733 352 QLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGM 431 (531)
Q Consensus 352 ~~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~ 431 (531)
++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++..+|++|++++++..+++++++.
T Consensus 409 i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~ 488 (613)
T KOG0061|consen 409 VPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGL 488 (613)
T ss_pred HHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhccCceeeeecCC---CCccH
Q 042733 432 MAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFLHHSLEIYRTG---QMKQF 506 (531)
Q Consensus 432 ~i~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~~~~~~~~~~~---~~~~~ 506 (531)
+++++.||...|+.+++++++++++|+||+++.++||.|| |++ +|+++|+||+++.|||.+....|...+ ...++
T Consensus 489 ~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~ 568 (613)
T KOG0061|consen 489 FISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTG 568 (613)
T ss_pred HHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccH
Confidence 9999999999999999999999999999999999999999 999 999999999999999986333343222 11345
Q ss_pred HHHHHhhcCCccccceeeEEEE
Q 042733 507 NNFFTNYFGFRHDFVGIVAVVV 528 (531)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~ 528 (531)
.+ +....++..++.|...+++
T Consensus 569 ~~-~l~~~~~~~~~~~~~l~~l 589 (613)
T KOG0061|consen 569 ED-VLKQLGFEDSSFWLDLLVL 589 (613)
T ss_pred HH-HHHhcCCcccccchhHHHH
Confidence 55 4456899998888766543
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.5e-81 Score=744.39 Aligned_cols=501 Identities=27% Similarity=0.432 Sum_probs=421.9
Q ss_pred eEEEEEeEEEEEeC--CCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc-eEEEEEEEcCcccchhhhcc
Q 042733 26 HYISLNEIVYSVDM--PQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG-YITRNITVSGYPEKQETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~--~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g-~~~G~i~~~g~~~~~~~~~~ 93 (531)
..++++||+|+++. +++.+|+|||+.++|| |||||||||+|+|+.++| ..+|+|.+||.+... .+++
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~ 836 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQR 836 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhc
Confidence 35899999999852 2457999999999888 999999999999987654 356999999988643 4678
Q ss_pred eEEEEecCCCCCCCCcHHhHHH--------------HHHHHHHHHHHhcCCchhhhccH---------HHHHHHHHHHHH
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH--------------CLYMFIEEGMELVELNPFRQALF---------EQRKRLTVAVEF 150 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~--------------~~~~~~~~~l~~l~l~~~~~~~~---------GerqRv~iA~aL 150 (531)
.+|||+|++.+++.+||+|+.. ++.++++++++.+++.+++|+.+ ||||||+||++|
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL 916 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVEL 916 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHH
Confidence 8999999999999999999821 23356789999999998877653 899999999999
Q ss_pred hhCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCCchhHH
Q 042733 151 VANPS-IISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLI 229 (531)
Q Consensus 151 ~~~p~-lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~~~~~~ 229 (531)
+.+|+ +|+|||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++||++++.|++++.++++.
T Consensus 917 ~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~ 996 (1394)
T TIGR00956 917 VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTII 996 (1394)
T ss_pred HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHH
Confidence 99997 99999999999999999999999999888999999999999767788999999997559999999987667899
Q ss_pred HHHHhhcCcccCCCCCCccchhhhhhccccccccCcchHHHhhccHHHHHHHHHHHHhCCCCCCC---CCCCCCCccccc
Q 042733 230 SYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFGVDFSDIYRNSELYKRAKAVITELSKPAPVS---KSLRFSTQYSQS 306 (531)
Q Consensus 230 ~~f~~~~~~~~~~~~~n~ad~~~~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 306 (531)
+||++. |.++||++.|||||++|+.+...+.....++.+.|+.|+.++...+.++++....... .+.....+++.|
T Consensus 997 ~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 1075 (1394)
T TIGR00956 997 NYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAAS 1075 (1394)
T ss_pred HHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCC
Confidence 999986 5457999999999999998754333333578899998887766655554443221111 111122468899
Q ss_pred HHHHHHHHHHHHHHHhh----------------------------cchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 042733 307 ICTKLFAWSWKLAQQRW----------------------------TKQQHLFNVMVSMYTAVLFLLVQNAGSLQLVAAVE 358 (531)
Q Consensus 307 ~~~q~~~l~~R~~~~~~----------------------------~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~e 358 (531)
+++|++.|++|+++.+| ++..++++++|++|+.+++.++.+ ...+|.++.|
T Consensus 1076 ~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~-~~~~~~f~~~ 1154 (1394)
T TIGR00956 1076 LWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLI-QQYLPPFVAQ 1154 (1394)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHH
Confidence 99999999999998776 467889999999999888776653 3455778788
Q ss_pred HHHH-HHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhH-------HHHHHHHHHHHHHHHHHHH
Q 042733 359 WTIF-YRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAM-------FFWYLLLMLFIFFYFTFYG 430 (531)
Q Consensus 359 r~v~-~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~-------f~~f~l~~~l~~~~~~~~~ 430 (531)
|.+| +||+++|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++.. |++|++++++..++++++|
T Consensus 1155 r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g 1234 (1394)
T TIGR00956 1155 RDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLG 1234 (1394)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 8885 8999999999999999999999999999999999999999999988866 9999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhccCceeeee-------cCC
Q 042733 431 MMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFLHHSLEIY-------RTG 501 (531)
Q Consensus 431 ~~i~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~~~~~~~~-------~~~ 501 (531)
+++++++||.++|+.+++++++++++|+||++|+++||.|| |++ +||++|+++|++.|||++.+++|. .|+
T Consensus 1235 ~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp 1314 (1394)
T TIGR00956 1235 QMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPP 1314 (1394)
T ss_pred HHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCC
Confidence 99999999999999999999999999999999999999999 999 999999999999999998887662 233
Q ss_pred CCccHHHH-------------------------------HHhhcCCccccceeeEEEEe
Q 042733 502 QMKQFNNF-------------------------------FTNYFGFRHDFVGIVAVVVG 529 (531)
Q Consensus 502 ~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 529 (531)
++.+|++| ++..+|+..++.|..++++.
T Consensus 1315 ~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~ 1373 (1394)
T TIGR00956 1315 SGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFI 1373 (1394)
T ss_pred CCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhh
Confidence 33444433 23456888999999888754
No 5
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=5.8e-82 Score=700.85 Aligned_cols=480 Identities=23% Similarity=0.301 Sum_probs=404.1
Q ss_pred CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc-eEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcH
Q 042733 41 QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG-YITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTL 110 (531)
Q Consensus 41 ~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g-~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv 110 (531)
++++|+|+|+.++|| |||||||||+|+|+.+++ ..+|+|.+||.+.....+++.+||++|+|.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999888 999999999999986543 4679999999987655678889999999999999999
Q ss_pred HhHH--------------HHHHHHHHHHHHhcCCchhhhccH-----------HHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 042733 111 YDFT--------------HCLYMFIEEGMELVELNPFRQALF-----------EQRKRLTVAVEFVANPSIISRDEPISG 165 (531)
Q Consensus 111 ~e~~--------------~~~~~~~~~~l~~l~l~~~~~~~~-----------GerqRv~iA~aL~~~p~lllLDEPtsg 165 (531)
+|+. +++..++++.++.+|+.+++|+.+ ||||||+||++|+.+|++++|||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9972 234456899999999988776643 799999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCCchhHHHHHHhhcCcccCCCCC
Q 042733 166 LDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGY 245 (531)
Q Consensus 166 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~~ 245 (531)
||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |++++.|++ +++.+||++++ ..||.+.
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~----~~~~~~f~~~g--~~~p~~~ 269 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSP----DQAVPFFSDLG--HPCPENY 269 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCH----HHHHHHHHHcC--CCCCCCC
Confidence 9999999999999999888999999999998889999999999996 999999997 46889999985 4699999
Q ss_pred Cccchhhhhhcccccccc-----CcchHHHhhccHHHHHHHHHHHHhCCCCCC---CCCCCCCCcccccHHHHHHHHHHH
Q 042733 246 NLATWLLEVTALSQERAF-----GVDFSDIYRNSELYKRAKAVITELSKPAPV---SKSLRFSTQYSQSICTKLFAWSWK 317 (531)
Q Consensus 246 n~ad~~~~v~~~~~~~~~-----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~q~~~l~~R 317 (531)
|||||++++.+...+... ..++.+.|+.++.+++..........+.+. ........++..++++|+..+++|
T Consensus 270 n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R 349 (617)
T TIGR00955 270 NPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKR 349 (617)
T ss_pred ChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHH
Confidence 999999999765432211 123445555555444433222211111111 111112245678999999999999
Q ss_pred HHHHhh----------------------------cchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC
Q 042733 318 LAQQRW----------------------------TKQQHLFNVMVSMYTAVLFLLVQNAGSLQLVAAVEWTIFYRESALG 369 (531)
Q Consensus 318 ~~~~~~----------------------------~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~ 369 (531)
+++..| .+..+++++.|++|+++++.++.++....+.++.||++|+||+.+|
T Consensus 350 ~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~ 429 (617)
T TIGR00955 350 SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSG 429 (617)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 988654 4667889999999999998888887777888999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 042733 370 TYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSS 449 (531)
Q Consensus 370 ~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~A~~~~~~ 449 (531)
+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++++||+|++++++..++++++|+++++++||..+|+.++++
T Consensus 430 ~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~ 509 (617)
T TIGR00955 430 LYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPP 509 (617)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhccCcee-eeecCCCC----ccHHHHHHhhcCCccccce
Q 042733 450 FYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFLHHSL-EIYRTGQM----KQFNNFFTNYFGFRHDFVG 522 (531)
Q Consensus 450 ~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 522 (531)
+++++++|+||+++.++||+|| |++ +||++|++++++.|||.+.++ +|...+.. .+ ++++++.||++.++.|
T Consensus 510 ~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~-g~~~l~~~g~~~~~~~ 588 (617)
T TIGR00955 510 FVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSS-GEVILETLSFRNADLY 588 (617)
T ss_pred HHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcC-hHHHHHhcCCCcccHH
Confidence 9999999999999999999999 999 999999999999999997664 55221111 23 4777788999999988
Q ss_pred eeEEEE
Q 042733 523 IVAVVV 528 (531)
Q Consensus 523 ~~~~~~ 528 (531)
..++++
T Consensus 589 ~~~~il 594 (617)
T TIGR00955 589 LDLIGL 594 (617)
T ss_pred HHHHHH
Confidence 876654
No 6
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.4e-81 Score=698.53 Aligned_cols=457 Identities=22% Similarity=0.278 Sum_probs=378.1
Q ss_pred ceEEEEEeEEEEEeCC---------------------------CccccccEEEEEcCC---------CchHHHHHHHHhC
Q 042733 25 PHYISLNEIVYSVDMP---------------------------QIGDLNSLSGAFRPG---------GAGKTTLMDVLAG 68 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~---------------------------~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G 68 (531)
++.+++.|++|+.+.. ++.+|+|+|+.++|| |||||||||+|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 6788999999887532 346999999999888 9999999999999
Q ss_pred CCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHH--------------HHHHHHHHHHHHhcCCchhh
Q 042733 69 RKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFT--------------HCLYMFIEEGMELVELNPFR 134 (531)
Q Consensus 69 ~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~--------------~~~~~~~~~~l~~l~l~~~~ 134 (531)
+.+++..+|+|.+||.+... ..++.+|||+|++.+++.+||+|+. ++..++++++++.+||.+++
T Consensus 117 ~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 117 RIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 86544468999999987643 3456799999999999999999972 12234578899999998877
Q ss_pred hcc----------HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccC
Q 042733 135 QAL----------FEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFD 204 (531)
Q Consensus 135 ~~~----------~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d 204 (531)
|+. .|||||++||++|+++|++|+|||||+|||+.++.++++.|++++++|+|||+++|||+.++.+.||
T Consensus 196 ~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D 275 (659)
T PLN03211 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD 275 (659)
T ss_pred CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Confidence 543 2899999999999999999999999999999999999999999988899999999999877889999
Q ss_pred eEEEEccCceeeecCCCCCCchhHHHHHHhhcCcccCCCCCCccchhhhhhccccccc------cC---cchHHHhhccH
Q 042733 205 ELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQERA------FG---VDFSDIYRNSE 275 (531)
Q Consensus 205 ~v~lL~~~G~~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~~n~ad~~~~v~~~~~~~~------~~---~~~~~~~~~s~ 275 (531)
++++|++ |++++.|++ +++.+||++++ .+||.+.|||||++|+++...+.. .. ....+.|+..
T Consensus 276 ~iilL~~-G~iv~~G~~----~~~~~~f~~~G--~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 347 (659)
T PLN03211 276 SVLVLSE-GRCLFFGKG----SDAMAYFESVG--FSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL- 347 (659)
T ss_pred eEEEecC-CcEEEECCH----HHHHHHHHHCC--CCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh-
Confidence 9999986 999999987 57899999985 369999999999999986532100 00 0112233221
Q ss_pred HHHHHHHHHHH--hCC-CCC-----CCCCCC-CCCcccccHHHHHHHHHHHHHHHhh-----------------------
Q 042733 276 LYKRAKAVITE--LSK-PAP-----VSKSLR-FSTQYSQSICTKLFAWSWKLAQQRW----------------------- 323 (531)
Q Consensus 276 ~~~~~~~~~~~--~~~-~~~-----~~~~~~-~~~~~~~~~~~q~~~l~~R~~~~~~----------------------- 323 (531)
..++.....+. ... ..+ ..+... ....+..+||+|+.+|++|+++...
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i~~~ll~G~lf 427 (659)
T PLN03211 348 LAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMW 427 (659)
T ss_pred ccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111110 000 000 001000 1123457899999999999987511
Q ss_pred --cchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheec
Q 042733 324 --TKQQHLFNVMVSMYTAVLFLLVQNAGSLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYA 401 (531)
Q Consensus 324 --~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~ 401 (531)
.+..+++++.|++||++++.++.++++.++.|+.||+||+||+++|+|++++|++|++++|+|+.++.+++|++|+||
T Consensus 428 ~~~~~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~ 507 (659)
T PLN03211 428 WHSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYW 507 (659)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeE
Confidence 345678999999999999988877777789999999999999999999999999999999999999999999999999
Q ss_pred ccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchH
Q 042733 402 MIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGL 479 (531)
Q Consensus 402 ~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~ 479 (531)
|+||++++++||+|++++++.+++++++|+++++++||.++|+.+++++++++++|+||+++ +||+|| |++ +||++
T Consensus 508 m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~ 585 (659)
T PLN03211 508 MAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTF 585 (659)
T ss_pred cCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997 799999 999 99999
Q ss_pred HHHHHHHHhhccC
Q 042733 480 LGISGILDLDFLH 492 (531)
Q Consensus 480 y~~~~l~~nef~~ 492 (531)
|+||+++.|||++
T Consensus 586 y~~eal~~nef~~ 598 (659)
T PLN03211 586 YSYRLLINVQYGE 598 (659)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999974
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.2e-80 Score=736.42 Aligned_cols=478 Identities=21% Similarity=0.270 Sum_probs=406.8
Q ss_pred cccccEEEEEcCC---------CchHHHHHHHHhCCCCC--ceEEEEEEEcCcccch--hhhcceEEEEecCCCCCCCCc
Q 042733 43 GDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG--GYITRNITVSGYPEKQ--ETFARILGYCEQNDIHSPHDT 109 (531)
Q Consensus 43 ~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~--g~~~G~i~~~g~~~~~--~~~~~~igyv~Q~~~~~~~lt 109 (531)
++|+|+|+.++|| |||||||||+|+|+.++ ...+|+|.++|.+... ...++.++|++|+|.+++.+|
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lT 154 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLT 154 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCC
Confidence 5899999999888 99999999999998532 2368999999987542 234567999999999999999
Q ss_pred HHhHHH------------------HHHHH-HHHHHHhcCCchhhhccH----------HHHHHHHHHHHHhhCCCeEEEe
Q 042733 110 LYDFTH------------------CLYMF-IEEGMELVELNPFRQALF----------EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 110 v~e~~~------------------~~~~~-~~~~l~~l~l~~~~~~~~----------GerqRv~iA~aL~~~p~lllLD 160 (531)
|+|+.. +..++ ++++++.+||++++++.+ ||||||+||++|+.+|++++||
T Consensus 155 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllD 234 (1394)
T TIGR00956 155 VGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWD 234 (1394)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEe
Confidence 999721 01112 356789999999887653 8999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCCchhHHHHHHhhcCcc
Q 042733 161 EPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVS 239 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~~~~~~~~f~~~~~~~ 239 (531)
|||+|||+.++.++++.|++++++ |+|||+++|||+.++++.||++++|++ |+++++|++ +++.+||++++ .
T Consensus 235 EPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~lG--~ 307 (1394)
T TIGR00956 235 NATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKMG--F 307 (1394)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHcC--C
Confidence 999999999999999999999875 999999999998789999999999996 999999986 57889999985 3
Q ss_pred cCCCCCCccchhhhhhcccccc----------ccCcchHHHhhccHHHHHHHHHHHHhCCCCC---------------CC
Q 042733 240 KIKDGYNLATWLLEVTALSQER----------AFGVDFSDIYRNSELYKRAKAVITELSKPAP---------------VS 294 (531)
Q Consensus 240 ~~~~~~n~ad~~~~v~~~~~~~----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---------------~~ 294 (531)
.||++.|||||++++++++.+. ....++++.|++|+.+++..+.+++.....+ ..
T Consensus 308 ~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (1394)
T TIGR00956 308 KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQS 387 (1394)
T ss_pred CCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhc
Confidence 6999999999999997654211 1124688889998877766554443211100 00
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHHHHhh----------------------------cchHHHHHHHHHHHHHHHHHHHH
Q 042733 295 KSLRFSTQYSQSICTKLFAWSWKLAQQRW----------------------------TKQQHLFNVMVSMYTAVLFLLVQ 346 (531)
Q Consensus 295 ~~~~~~~~~~~~~~~q~~~l~~R~~~~~~----------------------------~~~~~~~~~~g~lf~~~~~~~~~ 346 (531)
+.....++|..|+++|+++|++|+++..| .++.+++++.|++|+++++.++.
T Consensus 388 ~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~ 467 (1394)
T TIGR00956 388 KRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFS 467 (1394)
T ss_pred ccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 11122346789999999999999998765 46678999999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHH
Q 042733 347 NAGSLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYF 426 (531)
Q Consensus 347 ~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~ 426 (531)
++.++. .+..||+||+||+.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.+++
T Consensus 468 ~~~~i~-~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~ 546 (1394)
T TIGR00956 468 SLLEIA-SMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAM 546 (1394)
T ss_pred HHHHHH-HHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHH
Confidence 887764 4567999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhccCceeeee---cCC
Q 042733 427 TFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFLHHSLEIY---RTG 501 (531)
Q Consensus 427 ~~~~~~i~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~~~~~~~~---~~~ 501 (531)
+++|+++++++||..+|+.+++++++++++|+||++|+++||+|| |++ +||++|+|||++.|||++.+++|. |.|
T Consensus 547 ~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g 626 (1394)
T TIGR00956 547 SHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSG 626 (1394)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCC
Confidence 999999999999999999999999999999999999999999999 999 999999999999999998888772 211
Q ss_pred C---------------------C-ccHHHHHHhhcCCccccceeeEEEE
Q 042733 502 Q---------------------M-KQFNNFFTNYFGFRHDFVGIVAVVV 528 (531)
Q Consensus 502 ~---------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (531)
+ . +++.+|+...|||+++|.|..++++
T Consensus 627 ~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil 675 (1394)
T TIGR00956 627 GGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGII 675 (1394)
T ss_pred CCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHH
Confidence 1 1 3677999888999999999988764
No 8
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=7.1e-79 Score=721.39 Aligned_cols=476 Identities=20% Similarity=0.216 Sum_probs=394.1
Q ss_pred cccccEEEEEcCC---------CchHHHHHHHHhCCCCC-ceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHh
Q 042733 43 GDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG-GYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYD 112 (531)
Q Consensus 43 ~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~-g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e 112 (531)
.+|+|+||.++|| |||||||||+|+|+.++ ..++|+|.+||.+..+...++.++|++|+|.+++.+||+|
T Consensus 179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 258 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKE 258 (1470)
T ss_pred eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHH
Confidence 5899999999888 99999999999998653 2468999999987654344678999999999999999999
Q ss_pred HHHH------------------HH---------------------------HHHHHHHHhcCCchhhhccH---------
Q 042733 113 FTHC------------------LY---------------------------MFIEEGMELVELNPFRQALF--------- 138 (531)
Q Consensus 113 ~~~~------------------~~---------------------------~~~~~~l~~l~l~~~~~~~~--------- 138 (531)
+... .+ ..++++++.+||++++|+.+
T Consensus 259 tL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglS 338 (1470)
T PLN03140 259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGIS 338 (1470)
T ss_pred HHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCC
Confidence 7210 00 12456889999998876543
Q ss_pred -HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceee
Q 042733 139 -EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI 216 (531)
Q Consensus 139 -GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v 216 (531)
||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||+|++|++ |+++
T Consensus 339 GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~iv 417 (1470)
T PLN03140 339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQIV 417 (1470)
T ss_pred cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceEE
Confidence 899999999999999999999999999999999999999999987 5899999999998889999999999996 9999
Q ss_pred ecCCCCCCchhHHHHHHhhcCcccCCCCCCccchhhhhhccccccc------------cCcchHHHhhccHHHHHHHHHH
Q 042733 217 SVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQERA------------FGVDFSDIYRNSELYKRAKAVI 284 (531)
Q Consensus 217 ~~G~~~~~~~~~~~~f~~~~~~~~~~~~~n~ad~~~~v~~~~~~~~------------~~~~~~~~~~~s~~~~~~~~~~ 284 (531)
|+||+ +++.+||++++ ..||++.|||||++++++..++.. ...++++.|++++.+++...++
T Consensus 418 y~G~~----~~~~~yF~~lG--f~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~ 491 (1470)
T PLN03140 418 YQGPR----DHILEFFESCG--FKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENEL 491 (1470)
T ss_pred EeCCH----HHHHHHHHHcC--CCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHH
Confidence 99986 57889999985 369999999999999987543211 1235788888887766554433
Q ss_pred HHhCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHHHhh-------------------------c------chHHHHHHH
Q 042733 285 TELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQRW-------------------------T------KQQHLFNVM 333 (531)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~-------------------------~------~~~~~~~~~ 333 (531)
+.-.............++|..+++.|++.|++|+++..| + +..+.+.+.
T Consensus 492 ~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~ 571 (1470)
T PLN03140 492 SVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYI 571 (1470)
T ss_pred hhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Confidence 221000000111112346889999999999999987654 1 123456788
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHH
Q 042733 334 VSMYTAVLFLLVQNAGSLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFF 413 (531)
Q Consensus 334 g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~ 413 (531)
|++||++++.+++++.++ +.+..||+||+|||+.++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||
T Consensus 572 g~lff~~l~~~~~~~~~l-~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff 650 (1470)
T PLN03140 572 GALLFSMIINMFNGFAEL-ALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFF 650 (1470)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHH
Confidence 999999999888877665 6677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhcc
Q 042733 414 WYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFL 491 (531)
Q Consensus 414 ~f~l~~~l~~~~~~~~~~~i~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~ 491 (531)
+|++++++++++++++|+++++++||+.+|+.+++++++++++|+||+||+++||+|| |++ +||++|||+|+++|||.
T Consensus 651 ~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~ 730 (1470)
T PLN03140 651 KQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMF 730 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999 999 99999999999999998
Q ss_pred Cceeee-ecCCCCccHHHHHHhhcCCccccc--eeeEE
Q 042733 492 HHSLEI-YRTGQMKQFNNFFTNYFGFRHDFV--GIVAV 526 (531)
Q Consensus 492 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 526 (531)
+..+.+ .+.+...+.|++++..+||..++. |+.++
T Consensus 731 ~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~ 768 (1470)
T PLN03140 731 APRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVG 768 (1470)
T ss_pred CccccCcccCCCCcccHHHHHHhcCcCccccchhhhHH
Confidence 776642 112222334455557899997655 54443
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.5e-75 Score=653.84 Aligned_cols=478 Identities=22% Similarity=0.311 Sum_probs=415.5
Q ss_pred cccccEEEEEcCC---------CchHHHHHHHHhCCCCCc-eEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHh
Q 042733 43 GDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG-YITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYD 112 (531)
Q Consensus 43 ~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g-~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e 112 (531)
++|+|+||.++|| |||||||||+|+|..+.. ...|++.+||.+.++...++.++|++|+|.|+|.+||+|
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVre 208 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRE 208 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEee
Confidence 6999999999999 999999999999976532 235689999998765444788999999999999999999
Q ss_pred HH---------------HHHH----HHHHHHHHhcCCchhhhccH----------HHHHHHHHHHHHhhCCCeEEEeCCC
Q 042733 113 FT---------------HCLY----MFIEEGMELVELNPFRQALF----------EQRKRLTVAVEFVANPSIISRDEPI 163 (531)
Q Consensus 113 ~~---------------~~~~----~~~~~~l~~l~l~~~~~~~~----------GerqRv~iA~aL~~~p~lllLDEPt 163 (531)
+. ..++ ...+.+++.+||++++|+.+ ||||||++|.+++.+|+++++||+|
T Consensus 209 TldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t 288 (1391)
T KOG0065|consen 209 TLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEIT 288 (1391)
T ss_pred hhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccc
Confidence 81 1111 25678899999999999998 7999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCCchhHHHHHHhhcCcccCC
Q 042733 164 SGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIK 242 (531)
Q Consensus 164 sgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~~~~~~~~f~~~~~~~~~~ 242 (531)
+|||+.++.++++.|+++++. +.|++++.|||+.+++++||+|++|.+ |+++|+||. +++.+||++++ ..||
T Consensus 289 ~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~G--f~cP 361 (1391)
T KOG0065|consen 289 RGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDMG--FKCP 361 (1391)
T ss_pred ccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhcC--ccCC
Confidence 999999999999999999985 899999999999999999999999997 999999997 57899999985 3599
Q ss_pred CCCCccchhhhhhcccccc-----------ccC-cchHHHhhccHHHHHHHHHHHHhCCCCCCCCCCCCCCcccccHHHH
Q 042733 243 DGYNLATWLLEVTALSQER-----------AFG-VDFSDIYRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTK 310 (531)
Q Consensus 243 ~~~n~ad~~~~v~~~~~~~-----------~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 310 (531)
++.++|||+.++++..++. ... .++.+.|.+++.+++...+++.-.......+.....++|..++|.|
T Consensus 362 ~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~q 441 (1391)
T KOG0065|consen 362 PRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQ 441 (1391)
T ss_pred CccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHH
Confidence 9999999999998732221 111 4788899999888877644432222222233334457899999999
Q ss_pred HHHHHHHHHHHhh-----------------------------cchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 042733 311 LFAWSWKLAQQRW-----------------------------TKQQHLFNVMVSMYTAVLFLLVQNAGSLQLVAAVEWTI 361 (531)
Q Consensus 311 ~~~l~~R~~~~~~-----------------------------~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v 361 (531)
++.|+.|.+++.. .+..+...+.|++||++++.++++++++ +...+.|||
T Consensus 442 vk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~~~~pv 520 (1391)
T KOG0065|consen 442 VKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEI-ALTFQRLPV 520 (1391)
T ss_pred HHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHH-HHHHhhcch
Confidence 9999999987543 2345578899999999999999999887 445579999
Q ss_pred HHHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 042733 362 FYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQ 441 (531)
Q Consensus 362 ~~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~ 441 (531)
|+|||+..+|++++|.++.++.++|+.++.+++|.+|+||++||.++|++||.|+|+++++++|++++++++++++|++.
T Consensus 521 ~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~ 600 (1391)
T KOG0065|consen 521 FYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLS 600 (1391)
T ss_pred HHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhccCceeeeecCCCC----------------
Q 042733 442 IAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFLHHSLEIYRTGQM---------------- 503 (531)
Q Consensus 442 ~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~~~~~~~~~~~~~---------------- 503 (531)
+|+.++++.+++..+++||+||.++||+|| |++ +||+.|+||++++|||++++++|-|.||+
T Consensus 601 ~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~ 680 (1391)
T KOG0065|consen 601 IANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGA 680 (1391)
T ss_pred HHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhcc
Confidence 999999999999999999999999999999 999 99999999999999999999988533332
Q ss_pred ------ccHHHHHHhhcCCccccceeeEEEE
Q 042733 504 ------KQFNNFFTNYFGFRHDFVGIVAVVV 528 (531)
Q Consensus 504 ------~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (531)
+.+.+|+...|+|.+.|.|+.++++
T Consensus 681 ~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gil 711 (1391)
T KOG0065|consen 681 TLGNDYVSGRDYLKVQYQYEYKWYWRNFGIL 711 (1391)
T ss_pred ccCceEEecccccccccccccceeEeehhHH
Confidence 4567888888899999999998864
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-42 Score=322.58 Aligned_cols=190 Identities=25% Similarity=0.296 Sum_probs=168.6
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc----hhhhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK----QETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~----~~~~~~ 93 (531)
.|+++||+++|+ +..+|++||+.+.+| |||||||||||.|+... .+|+|.++|.... ....|+
T Consensus 2 mi~i~~l~K~fg--~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~--~~G~I~i~g~~~~~~~~~~~~R~ 77 (240)
T COG1126 2 MIEIKNLSKSFG--DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP--DSGSITVDGEDVGDKKDILKLRR 77 (240)
T ss_pred eEEEEeeeEEeC--CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC--CCceEEECCEeccchhhHHHHHH
Confidence 478999999995 678999999887776 99999999999998653 4789999996442 235788
Q ss_pred eEEEEecCCCCCCCCcHHhH------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 94 ILGYCEQNDIHSPHDTLYDF------------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
.+|+|+|+.++||++||.|| +.+.++...+.|+.+||.+.++..+ ||||||+|||||+.+|++
T Consensus 78 ~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~v 157 (240)
T COG1126 78 KVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKV 157 (240)
T ss_pred hcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCE
Confidence 99999999999999999998 3455667888999999999988876 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+++|||||+|||+...++++.+++++++|.|.|++||+... +.+.+|||++|++ |+++..|+++
T Consensus 158 mLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~-G~iie~g~p~ 221 (240)
T COG1126 158 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQ-GKIIEEGPPE 221 (240)
T ss_pred EeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeC-CEEEEecCHH
Confidence 99999999999999999999999999999999999999874 5678999999996 9999999764
No 11
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=8.1e-39 Score=312.75 Aligned_cols=191 Identities=25% Similarity=0.350 Sum_probs=166.5
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcC---------CCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRP---------GGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~---------gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.++++||+++|+ ++.+|+|+|+.+.+ ||||||||||+|+|..++ .+|+|.++|.+... .++.|.
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i~~~~~kelAk~ 77 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDIASLSPKELAKK 77 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCchhhcCHHHHhhh
Confidence 468889999995 56788888866655 499999999999997653 46899999987643 457789
Q ss_pred EEEEecCCCCCCCCcHHhH---------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 95 LGYCEQNDIHSPHDTLYDF---------------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~---------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
+||+||+....+.+||+|. ..+..+.+++.++.+++.+.+++.+ ||||||.|||||+++|
T Consensus 78 ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~ 157 (258)
T COG1120 78 LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQET 157 (258)
T ss_pred EEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCC
Confidence 9999999988889999986 1233456889999999999998877 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
++|+||||||+||...+.+++++++++++ +|+|||+++||++. ..++||++++|++ |++++.|+|++
T Consensus 158 ~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a~G~p~e 225 (258)
T COG1120 158 PILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVAQGTPEE 225 (258)
T ss_pred CEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEeecCcch
Confidence 99999999999999999999999999995 59999999999985 6789999999996 99999999865
No 12
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.4e-38 Score=322.43 Aligned_cols=190 Identities=27% Similarity=0.376 Sum_probs=161.0
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARIL 95 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~i 95 (531)
.++++||++.|+. ++.+|+|||+.+++| |||||||+|+|+|...+ .+|+|.++|.+... ...++.+
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~~~~~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeCccCHHHHHhhe
Confidence 3566677777741 346677776666655 99999999999998764 57999999987543 4567889
Q ss_pred EEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEE
Q 042733 96 GYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISR 159 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllL 159 (531)
||++|++.+++.+|++|+- ....++++++++.++|.+.+++.+ |||||++||+||+++|+++||
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliL 160 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLIL 160 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999981 123467899999999998555444 999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcC-CeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 160 DEPISGLDARAATTVIRMVRNTVDMG-RTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 160 DEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||||+||||.++.++++.|++++++| +||+++||+++ ++...||+|++|++ |++++.|++
T Consensus 161 DEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g~~ 221 (293)
T COG1131 161 DEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEGTP 221 (293)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeCCH
Confidence 99999999999999999999999986 89999999998 68888999999996 999999975
No 13
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-38 Score=312.37 Aligned_cols=191 Identities=21% Similarity=0.317 Sum_probs=165.6
Q ss_pred EEEEeEEEEEeCC---CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---h---h
Q 042733 28 ISLNEIVYSVDMP---QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---Q---E 89 (531)
Q Consensus 28 l~~~~ls~~~~~~---~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~---~ 89 (531)
|+++++++.|... ...+|+|||+.+.+| |||||||+|+|.++..+ .+|+|.++|.+.. . .
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P--tsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP--TSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEEcCEecccCChHHHH
Confidence 5777777777642 125777777777766 99999999999997653 4799999996542 1 3
Q ss_pred hhcceEEEEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhC
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVAN 153 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~ 153 (531)
..|+.||+++|+.+++...||.++ +.+.++++.+.++.+||.+.++..+ ||||||+|||||+.+
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~ 159 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANN 159 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcC
Confidence 467899999999999999999998 4667789999999999999888876 999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|++|++|||||+|||.+.+.++++|+++.++ |.||+++||+++. +.+.||||.+|++ |+++..|+..
T Consensus 160 P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V-vk~ic~rVavm~~-G~lvE~G~v~ 227 (339)
T COG1135 160 PKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV-VKRICDRVAVLDQ-GRLVEEGTVS 227 (339)
T ss_pred CCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHhhhheEeeC-CEEEEeccHH
Confidence 9999999999999999999999999999875 9999999999873 6779999999996 9999999875
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.9e-38 Score=299.58 Aligned_cols=204 Identities=23% Similarity=0.287 Sum_probs=172.1
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hh
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ET 90 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~ 90 (531)
..|++++|+++++ ++.+++|+++.+.+| |+|||||||+|.|+.++ .+|+|.+.|.+... ..
T Consensus 7 ~~I~vr~v~~~fG--~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 7 PLIEVRGVTKSFG--DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred ceEEEeeeeeecC--CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcchhccCHHHHHH
Confidence 4578888888884 567888888777776 99999999999998764 57999999987532 24
Q ss_pred hcceEEEEecCCCCCCCCcHHhH------------HHHHHHHHHHHHHhcCCchh-hhccH-----HHHHHHHHHHHHhh
Q 042733 91 FARILGYCEQNDIHSPHDTLYDF------------THCLYMFIEEGMELVELNPF-RQALF-----EQRKRLTVAVEFVA 152 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~------------~~~~~~~~~~~l~~l~l~~~-~~~~~-----GerqRv~iA~aL~~ 152 (531)
.++++|+++|+..+|..+||+|| +...++.+...++.+||... .+..+ |||||+++|||++.
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial 162 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL 162 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc
Confidence 67889999999999999999998 33455667778899999887 55554 99999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCC----chh
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPS----SIH 227 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~----~~~ 227 (531)
||+++++||||+||||.++..+-++++++.+. |.|++++|||.+ +++..|||+++|.+ |+++..|++++. ...
T Consensus 163 dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gkv~~~Gt~~el~~sd~P~ 240 (263)
T COG1127 163 DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GKVIAEGTPEELLASDDPW 240 (263)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CEEEEeCCHHHHHhCCCHH
Confidence 99999999999999999999999999999986 999999999988 58899999999996 999999998642 234
Q ss_pred HHHHHHhh
Q 042733 228 LISYFEKI 235 (531)
Q Consensus 228 ~~~~f~~~ 235 (531)
+.+||...
T Consensus 241 v~qf~~G~ 248 (263)
T COG1127 241 VRQFFNGI 248 (263)
T ss_pred HHHHhcCC
Confidence 55666543
No 15
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-38 Score=306.53 Aligned_cols=191 Identities=24% Similarity=0.354 Sum_probs=162.8
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEc---------CCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFR---------PGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~---------~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..++++|++++|+. +++|+|||+.+. |||||||||+|+|.|..++ .+|+|.++|.+.....-+.+||
T Consensus 3 ~~i~v~nl~v~y~~--~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p--~~G~i~~~g~~~~~~~~~~~Ig 78 (254)
T COG1121 3 PMIEVENLTVSYGN--RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRLRIG 78 (254)
T ss_pred cEEEEeeeEEEECC--EeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CcceEEEccccccccccCCeEE
Confidence 45788899998863 258888887665 4599999999999997653 5799999998765443356899
Q ss_pred EEecCC--CCCCCCcHHhH---------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 97 YCEQND--IHSPHDTLYDF---------------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 97 yv~Q~~--~~~~~ltv~e~---------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
||||.. ......||+|. ....++.++++|+.+|+.+++++.+ ||+|||.|||||+++|
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p 158 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNP 158 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCC
Confidence 999954 23345899997 1233578999999999999999887 8999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
++|+|||||+|+|+.++..++++|++++++|+||++++||++ .+...||+|++|+ +++++.|++++
T Consensus 159 ~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~G~~~~ 224 (254)
T COG1121 159 DLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIASGPPEE 224 (254)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEeccChhh
Confidence 999999999999999999999999999989999999999998 5888999999997 47999999875
No 16
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=8.4e-39 Score=304.65 Aligned_cols=190 Identities=21% Similarity=0.312 Sum_probs=169.8
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~i 95 (531)
++++|+|++|. ++.+++|+|+.+.+| ||||||+||+|.++..+ .+|+|.++|.+... ..+|+.|
T Consensus 2 I~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep--t~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 2 IEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP--TSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred ceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC--CCceEEECCeecccCCHHHHHHhh
Confidence 68889998885 567888888888777 99999999999998764 57999999987643 4688999
Q ss_pred EEEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCch--hhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 96 GYCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNP--FRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~--~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
|||-|+-.+||++||.|| +...+++++++++.+||++ ++++.+ ||+|||.+||||+.+|++|
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~il 157 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPIL 157 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeE
Confidence 999999999999999998 4556788999999999975 677766 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
++|||+++|||.++.++.+.++++.++ |+|||++|||.+ |...+.||+++|++ |+++-.++|++
T Consensus 158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~-G~i~Q~~~P~~ 222 (309)
T COG1125 158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDA-GEIVQYDTPDE 222 (309)
T ss_pred eecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecC-CeEEEeCCHHH
Confidence 999999999999999999999999876 999999999998 68899999999996 99999998753
No 17
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-38 Score=297.35 Aligned_cols=194 Identities=23% Similarity=0.277 Sum_probs=169.1
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc------hhh
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK------QET 90 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~------~~~ 90 (531)
..|+++||++.|+ +++++|+|||+.+.+| |||||||||+|.|..++ .+|+|.++|.... ...
T Consensus 2 ~~i~~~nl~k~yp-~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~--t~G~i~~~g~~i~~~~~k~lr~ 78 (258)
T COG3638 2 MMIEVKNLSKTYP-GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP--TSGEILFNGVQITKLKGKELRK 78 (258)
T ss_pred ceEEEeeeeeecC-CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC--CcceEEecccchhccchHHHHH
Confidence 3689999999997 4678999999999888 99999999999997664 4689999996542 134
Q ss_pred hcceEEEEecCCCCCCCCcHHhH-------------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHH
Q 042733 91 FARILGYCEQNDIHSPHDTLYDF-------------------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTV 146 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~-------------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~i 146 (531)
+|+.+||++|++++.+.++|.++ .++.+..+-+.++.+|+.+.+..+. ||+|||+|
T Consensus 79 ~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 79 LRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred HHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHH
Confidence 67899999999999999999998 1334556777899999988765554 89999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCC
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPS 224 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~ 224 (531)
||||+++|++++.|||+++|||.+++++++.|+++++ +|.|||++.|+.+. +.++|||++-|++ |+++|+||+++.
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~~-G~ivfDg~~~el 235 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKA-GRIVFDGPASEL 235 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEecC-CcEEEeCChhhh
Confidence 9999999999999999999999999999999999987 49999999999885 6789999999996 999999998653
No 18
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-38 Score=290.26 Aligned_cols=199 Identities=20% Similarity=0.281 Sum_probs=168.0
Q ss_pred hhhhcccCCCccccccceEEEEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc-
Q 042733 9 IEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK- 87 (531)
Q Consensus 9 i~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~- 87 (531)
|++.+++|+.... .=.++||||.... ..|.|.+|||||||||+||+|+++..+ .+|.+.++|.+..
T Consensus 2 l~v~~l~K~y~~~-----v~AvrdVSF~ae~------Gei~GlLG~NGAGKTT~LRmiatlL~P--~~G~v~idg~d~~~ 68 (245)
T COG4555 2 LEVTDLTKSYGSK-----VQAVRDVSFEAEE------GEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTVR 68 (245)
T ss_pred eeeeehhhhccCH-----HhhhhheeEEecc------ceEEEEEcCCCCCchhHHHHHHHhccC--CCceEEEeeccccc
Confidence 5556666653221 1145566666642 246677788899999999999998663 4799999998753
Q ss_pred -hhhhcceEEEEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHH
Q 042733 88 -QETFARILGYCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEF 150 (531)
Q Consensus 88 -~~~~~~~igyv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL 150 (531)
+...++.+|.++.+..++..+|++|+ ..+.+.+++++.+.+++.++.|+.+ |+||||+|||||
T Consensus 69 ~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 69 DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHH
Confidence 34578899999988899999999998 3455678899999999999999988 899999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+++|++++|||||||||..+.+.+.+.+++++++|++||++||.++ |+..+||+|++|++ |++++.|+++
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~ 218 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIE 218 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHH
Confidence 9999999999999999999999999999999989999999999987 78889999999996 9999999874
No 19
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-37 Score=295.31 Aligned_cols=178 Identities=23% Similarity=0.332 Sum_probs=158.0
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGY 97 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igy 97 (531)
.+++++++++|+ ...+|+|+|+.+.+| |||||||||+|+|+.++ .+|+|.++|.+.. .....+||
T Consensus 3 ~l~i~~v~~~f~--~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p--~~G~V~~~g~~v~--~p~~~~~~ 76 (248)
T COG1116 3 LLEIEGVSKSFG--GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVLLDGRPVT--GPGPDIGY 76 (248)
T ss_pred eEEEEeeEEEeC--ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCcccC--CCCCCEEE
Confidence 578999999996 368999999998888 99999999999998764 4789999998863 23567899
Q ss_pred EecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 98 CEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
|+|++.++|++||.+| +.+...++++.++.+||.+..++.+ ||||||+|||||+.+|++|+|||
T Consensus 77 vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDE 156 (248)
T COG1116 77 VFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDE 156 (248)
T ss_pred EeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999999999999998 2334567899999999999988877 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 162 PISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
|++.||+.++..+.+.|.++.+ .++||+++|||.+ |...+.|||++|.+
T Consensus 157 PFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~ 206 (248)
T COG1116 157 PFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSN 206 (248)
T ss_pred CcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecC
Confidence 9999999999999999999876 4899999999998 56778999999985
No 20
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.4e-37 Score=281.34 Aligned_cols=189 Identities=22% Similarity=0.322 Sum_probs=164.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hhh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ETF 91 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~~ 91 (531)
+|+++||++.|+.+ .++|+|||+.+.+| |||||||||+|.+...+ ..|+|.++|.+... ..+
T Consensus 1 mI~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p--t~G~i~~~~~dl~~l~~~~iP~L 77 (223)
T COG2884 1 MIRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP--TRGKILVNGHDLSRLKGREIPFL 77 (223)
T ss_pred CeeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC--CCceEEECCeecccccccccchh
Confidence 36899999999865 67999999998888 99999999999996543 46899999987532 236
Q ss_pred cceEEEEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCC
Q 042733 92 ARILGYCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPS 155 (531)
Q Consensus 92 ~~~igyv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ 155 (531)
||+||+|+||..+.+..||.|+ ..+.++++.++++.+||.+.++..+ ||||||+||||++.+|+
T Consensus 78 RR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 78 RRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred hheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCC
Confidence 8899999999999999999998 4566788999999999998887765 99999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 156 IISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
+|+.||||.+|||..+.++++++.++.+.|+||+++|||.+. +...-.|++.|.+ |+++....
T Consensus 158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l-v~~~~~rvl~l~~-Grl~~d~~ 220 (223)
T COG2884 158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL-VNRMRHRVLALED-GRLVRDES 220 (223)
T ss_pred eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH-HHhccCcEEEEeC-CEEEeccc
Confidence 999999999999999999999999999999999999999653 4445578888886 99987653
No 21
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.5e-36 Score=308.25 Aligned_cols=204 Identities=25% Similarity=0.355 Sum_probs=161.5
Q ss_pred CCchhhhhhhcccCCCccccccceEEEEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEc
Q 042733 3 PMTEAAIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVS 82 (531)
Q Consensus 3 ~m~~~~i~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~ 82 (531)
||.+.+|++++++++... ...++|+++++.. ..+.+.+||||||||||+|+|+|..++ .+|++.++
T Consensus 2 ~~~~~~i~i~~l~k~~~~------~~~l~~vsl~i~~------Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~i~ 67 (306)
T PRK13537 2 PMSVAPIDFRNVEKRYGD------KLVVDGLSFHVQR------GECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLC 67 (306)
T ss_pred CCCCceEEEEeEEEEECC------eEEEecceEEEeC------CcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEEC
Confidence 555555555555554211 0134555555432 134555666699999999999998653 47999999
Q ss_pred Ccccch--hhhcceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHH
Q 042733 83 GYPEKQ--ETFARILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRL 144 (531)
Q Consensus 83 g~~~~~--~~~~~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv 144 (531)
|.+... ...++.+||++|++.+++.+|++|+.. ....+++++++.+++.+..++.+ |||||+
T Consensus 68 G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 147 (306)
T PRK13537 68 GEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRL 147 (306)
T ss_pred CEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHH
Confidence 987532 245678999999999999999999821 12345678889999988777766 999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+||+||+++|++|+|||||+|||+.+++.+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+++
T Consensus 148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~~~ 223 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGAPH 223 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999999999878999999999987 67889999999996 9999999863
No 22
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.7e-36 Score=288.60 Aligned_cols=182 Identities=24% Similarity=0.367 Sum_probs=154.1
Q ss_pred EEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---h---hh
Q 042733 28 ISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---Q---ET 90 (531)
Q Consensus 28 l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~---~~ 90 (531)
++++||++.|..+. ..+|+++|+.+++| ||||||||++|.|...+ .+|.+.++|.+.. + ..
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHH
Confidence 46889998886443 26899999888887 99999999999997654 4689999996542 1 12
Q ss_pred -hcceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhh-ccH-----HHHHHHHHHHHHhh
Q 042733 91 -FARILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQ-ALF-----EQRKRLTVAVEFVA 152 (531)
Q Consensus 91 -~~~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~-~~~-----GerqRv~iA~aL~~ 152 (531)
.++.+|||+|+..+.|.+||.|+.. ......+++++.+|+.+..+ +.+ ||||||+|||||+.
T Consensus 80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~ 159 (226)
T COG1136 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN 159 (226)
T ss_pred HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc
Confidence 3567999999999999999999822 34567888899999986555 433 99999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
+|++|+.||||.+||+.+++.+++++++++++ |+|||++|||+. +...|||++.+.+ |+
T Consensus 160 ~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~d-G~ 219 (226)
T COG1136 160 NPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKD-GK 219 (226)
T ss_pred CCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeC-Ce
Confidence 99999999999999999999999999999875 999999999975 6789999999996 77
No 23
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-36 Score=306.31 Aligned_cols=192 Identities=22% Similarity=0.306 Sum_probs=169.1
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARIL 95 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~i 95 (531)
..|+++||+++|+. ..+|+++|+.+.+| |||||||||+|+|+.+. .+|+|.++|.+.+. ...+|.+
T Consensus 2 ~~i~l~~v~K~yg~--~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~--~~G~I~i~g~~vt~l~P~~R~i 77 (338)
T COG3839 2 AELELKNVRKSFGS--FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP--TSGEILIDGRDVTDLPPEKRGI 77 (338)
T ss_pred cEEEEeeeEEEcCC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCChhHCCE
Confidence 35788889888862 11888888777665 99999999999998663 47999999998765 3456889
Q ss_pred EEEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEE
Q 042733 96 GYCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISR 159 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllL 159 (531)
|+|+|+..+||++||+|| +++..++++++.+.+++++..++++ ||||||++||||+.+|++++|
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~ 157 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLL 157 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEe
Confidence 999999999999999998 3566788999999999999999877 999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 160 DEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 160 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
|||+|+||...+..+...|+++.++ |.|+|.+|||.. |+..++||+++|++ |++.-.|+|.+
T Consensus 158 DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~-G~i~Q~g~p~e 220 (338)
T COG3839 158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMND-GRIQQVGTPLE 220 (338)
T ss_pred cCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeC-CeeeecCChHH
Confidence 9999999999999999999999876 999999999975 67889999999995 99999999853
No 24
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-36 Score=309.32 Aligned_cols=192 Identities=24% Similarity=0.339 Sum_probs=171.8
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARIL 95 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~i 95 (531)
..++++||+++|+ +..+++|+|+.+.+| |||||||||+|+|...+ .+|+|.++|.++.. ...+|.+
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p--~~G~I~l~G~~i~~lpp~kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP--SSGEILLDGEDITDVPPEKRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCChhhccc
Confidence 4679999999996 678999999888877 99999999999998653 46899999998754 3457889
Q ss_pred EEEecCCCCCCCCcHHhH------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 96 GYCEQNDIHSPHDTLYDF------------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
|+|+|+..+||++||.|| .++.++++++.++.++|++.+++.+ ||||||++||||+.+|++|+
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLL 159 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLL 159 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhh
Confidence 999999999999999999 1345678999999999999998887 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
||||.|+||..-+.++...++++.++ |.|.|++|||.. |...++|||++|++ |++.-.|+|++
T Consensus 160 LDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gtP~e 223 (352)
T COG3842 160 LDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGTPEE 223 (352)
T ss_pred hcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCCHHH
Confidence 99999999999999999999999875 999999999976 67889999999996 99999999864
No 25
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.3e-35 Score=306.23 Aligned_cols=191 Identities=21% Similarity=0.279 Sum_probs=162.5
Q ss_pred EEEEeEEEEEeCC--CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hh
Q 042733 28 ISLNEIVYSVDMP--QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ET 90 (531)
Q Consensus 28 l~~~~ls~~~~~~--~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~ 90 (531)
|+++|++++|+.+ ...+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLTTLSNSELTK 79 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCcCCHHHHHH
Confidence 6788888888532 236888888887777 99999999999998653 47999999986532 12
Q ss_pred hcceEEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
.++.+||++|+..+++..||.|+. ....+++.+.++.+|+.+..++.+ ||||||+|||||+.+|
T Consensus 80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P 159 (343)
T TIGR02314 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 159 (343)
T ss_pred HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence 467899999999999999999872 123456788899999988877766 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|+|||||++||+.++..++++|++++++ |.|||++||+++ .+.+.||++++|++ |+++..|+++
T Consensus 160 ~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv~~g~~~ 226 (343)
T TIGR02314 160 KVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELIEQGTVS 226 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999999999875 999999999987 57788999999986 9999999863
No 26
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.9e-35 Score=305.33 Aligned_cols=192 Identities=26% Similarity=0.307 Sum_probs=165.6
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFAR 93 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~ 93 (531)
...|+++||+++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ...++
T Consensus 39 ~~~i~i~nl~k~y~--~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~~~~~~~~~~~ 114 (340)
T PRK13536 39 TVAIDLAGVSKSYG--DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVPVPARARLARA 114 (340)
T ss_pred ceeEEEEEEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEECCcchHHHhc
Confidence 45699999999995 457999999888776 99999999999998653 47999999987532 34567
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
.+||++|+..+++.+|+.|+.. .....++++++.+++.+..++.+ |||||++||+||+++|++|
T Consensus 115 ~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lL 194 (340)
T PRK13536 115 RIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLL 194 (340)
T ss_pred cEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 8999999999999999999721 12234667889999987777665 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+++
T Consensus 195 iLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~~~ 257 (340)
T PRK13536 195 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGRPH 257 (340)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999999878999999999987 67889999999996 9999999863
No 27
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.9e-36 Score=290.40 Aligned_cols=190 Identities=22% Similarity=0.320 Sum_probs=166.5
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc----hhhhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK----QETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~----~~~~~~ 93 (531)
.+++++++|+|+.. ..+|+++|+.+.+| |||||||+++|+|...+ .+|.|.++|.+.. ...+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~~~~~~~~~~~~ 79 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDTSSEKSLLELRQ 79 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeeccchhhHHHhhc
Confidence 46899999999754 68999999888877 99999999999997653 4589999998754 345788
Q ss_pred eEEEEecCCC-CCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 94 ILGYCEQNDI-HSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 94 ~igyv~Q~~~-~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
.+|||+|++. .+...||.+. .++...+++++++.+++.+.+++.+ ||||||+||.+|+.+|++
T Consensus 80 ~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~i 159 (235)
T COG1122 80 KVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEI 159 (235)
T ss_pred ceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCE
Confidence 9999999974 4566788775 3456788999999999998887776 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|||||+|||+.+++++++.+++++++ |+|+|++|||.+ .+...+|++++|++ |+++++|++
T Consensus 160 liLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~~g~p 223 (235)
T COG1122 160 LLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILADGDP 223 (235)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEeecCCH
Confidence 9999999999999999999999999987 799999999987 57888999999996 999999986
No 28
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-35 Score=305.08 Aligned_cols=191 Identities=21% Similarity=0.273 Sum_probs=162.0
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILG 96 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~ig 96 (531)
.|+++|++++|+ +.+.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.+|
T Consensus 3 ~l~i~~l~~~~~-~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~~~~~~~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYD-GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI--TSGEIWIGGRVVNELEPADRDIA 79 (356)
T ss_pred EEEEEeEEEEeC-CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEE
Confidence 367788888773 1345777777777666 99999999999998653 57999999986532 22357899
Q ss_pred EEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
||+|++.++|++||+|+. .....+++++++.+++.+..++.+ ||||||+|||||+.+|++|+||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLD 159 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD 159 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999999982 122356788999999998887776 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||++||+.++..+.+.|+++.++ |.|+|++|||++ ++..++|++++|++ |+++..|+++
T Consensus 160 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~~~ 220 (356)
T PRK11650 160 EPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGTPV 220 (356)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECCHH
Confidence 999999999999999999999875 999999999987 68889999999986 9999999874
No 29
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-36 Score=292.23 Aligned_cols=190 Identities=28% Similarity=0.403 Sum_probs=160.3
Q ss_pred EEEEeEEEEEeCCCccccccEEEEE---------cCCCchHHHHHHHHhCCCCCceEEEEEEEcCc---ccch-hhhcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAF---------RPGGAGKTTLMDVLAGRKPGGYITRNITVSGY---PEKQ-ETFARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i---------~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~---~~~~-~~~~~~ 94 (531)
|.++++++.++ ...+++||++.+ ||+|||||||||+|+|+..+ ..|.|.+||. +... ....|+
T Consensus 3 i~i~~~~~~~~--~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p--~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 3 IRINNVKKRFG--AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred eeehhhhhhcc--cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC--CCceEEECCEeccchhccchhhcc
Confidence 45555555553 344555555555 55599999999999998663 4789999998 4333 234578
Q ss_pred EEEEecCCCCCCCCcHHhH-------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 95 LGYCEQNDIHSPHDTLYDF-------------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~-------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
||||+|+..+|+++||.++ ....+.++++.|+.+.|++..++.+ ||||||++||||+.+|++
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~v 158 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKV 158 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCe
Confidence 9999999999999999998 2356678999999999999988876 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
|+||||+++||..-+.++.+-|+++.++ |.|++++|||+. ++++.+|||++|++ |+|...|++++
T Consensus 159 LLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~e 224 (345)
T COG1118 159 LLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPDE 224 (345)
T ss_pred EeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHHH
Confidence 9999999999999999999999999876 999999999987 78999999999996 99999999853
No 30
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=3.8e-35 Score=304.57 Aligned_cols=190 Identities=24% Similarity=0.320 Sum_probs=163.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILG 96 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~ig 96 (531)
.|+++|++++|+ .+.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.+|
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~~~~~~~~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFG--AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ--TAGTIYQGGRDITRLPPQKRDYG 79 (353)
T ss_pred EEEEEEEEEEeC--CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEE
Confidence 477888888885 345788888777666 99999999999998653 57999999986532 22457799
Q ss_pred EEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
|++|+..++|++||+|+. .....+++++++.+++.+..++.+ ||||||+|||||+.+|++++||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLD 159 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLD 159 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999999999999982 123457889999999998888776 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||++||+.++.++.+.|+++.++ |.|+|++|||++ ++..++|++++|++ |+++..|+++
T Consensus 160 EP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~~~ 220 (353)
T TIGR03265 160 EPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGTPQ 220 (353)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999875 999999999987 68889999999996 9999999874
No 31
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-35 Score=288.41 Aligned_cols=188 Identities=22% Similarity=0.287 Sum_probs=157.0
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hhhc
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ETFA 92 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~~~ 92 (531)
|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..++
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~ 76 (235)
T cd03261 1 IELRGLTKSFG--GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDISGLSEAELYRLR 76 (235)
T ss_pred CeEEEEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccChhhHHHHh
Confidence 36788888884 346888888777766 99999999999998653 46899999976432 2356
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCC
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPS 155 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ 155 (531)
+.++|++|++.+++.+|+.|+.. .....+++.++.+++.+..++.+ ||||||+||+||+.+|+
T Consensus 77 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ 156 (235)
T cd03261 77 RRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPE 156 (235)
T ss_pred cceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 77999999999999999998721 11234677889999987666654 99999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 156 IISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 157 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 221 (235)
T cd03261 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGTP 221 (235)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEEecCH
Confidence 99999999999999999999999999874 899999999987 57778999999986 999998875
No 32
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=5.1e-35 Score=284.17 Aligned_cols=184 Identities=21% Similarity=0.287 Sum_probs=153.9
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hhhc
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ETFA 92 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~~~ 92 (531)
++++|++++|+...+.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~ 79 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLTRLRGREIPFLR 79 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehhhcChhHHHHHH
Confidence 6788999988532346889988888777 99999999999998653 46999999976432 1245
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
+.++|++|++.+++.+|+.|+.. .....+++.++.+++.+..++.+ |||||++||+||+.+|++
T Consensus 80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (216)
T TIGR00960 80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL 159 (216)
T ss_pred HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 67999999999899999998721 12345778899999987766655 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
|+|||||+|||+.++..+.+.|++++++|.|||++||+++ .+...||++++|++ |++
T Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i 216 (216)
T TIGR00960 160 LLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GRL 216 (216)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CcC
Confidence 9999999999999999999999999877999999999987 56778999999986 764
No 33
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-35 Score=302.21 Aligned_cols=190 Identities=23% Similarity=0.348 Sum_probs=162.5
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILG 96 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~ig 96 (531)
.|+++|++++|+ ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.+|
T Consensus 6 ~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFG--SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred EEEEEeEEEEEC--CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEE
Confidence 467888888874 345778887777766 99999999999998663 47999999987543 22357899
Q ss_pred EEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
|++|+..++|++||.|+. .+..+++++.++.+++.+..++.+ ||||||+|||||+.+|++|+||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLD 161 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFD 161 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 999999999999999982 123457788999999998877766 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||+|||+.++.++.+.|+++.++ |+|+|++|||++ ++.+++|++++|++ |+++..|+++
T Consensus 162 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~~~ 222 (351)
T PRK11432 162 EPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGSPQ 222 (351)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999875 999999999987 67889999999996 9999999874
No 34
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-35 Score=279.17 Aligned_cols=192 Identities=24% Similarity=0.342 Sum_probs=162.5
Q ss_pred EEEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhh
Q 042733 27 YISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETF 91 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~ 91 (531)
.++++|+++.|+.+. ..+|++||+.+.+| |||||||.|+|+|..++ .+|+|.++|.+... ..+
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCcccCccccchhh
Confidence 579999999997432 14999999999988 99999999999998764 47999999976533 245
Q ss_pred cceEEEEecCCC--CCCCCcHHhHH---------HHHHHHHHHHHHhcCCch-hhhccH-----HHHHHHHHHHHHhhCC
Q 042733 92 ARILGYCEQNDI--HSPHDTLYDFT---------HCLYMFIEEGMELVELNP-FRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 92 ~~~igyv~Q~~~--~~~~ltv~e~~---------~~~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
++.+.+|+||+. +.|..||++.. ....+++.++++.+||.+ +.++.+ |||||++|||||+.+|
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P 160 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP 160 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCC
Confidence 678999999974 67889998862 123344889999999975 445544 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|+||||||+||+..+.+++++|.+++++ +.|.|++|||.+ -+...|||+++|++ |+++..++.+
T Consensus 161 klLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~ivE~~~~~ 227 (252)
T COG1124 161 KLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQIVEIGPTE 227 (252)
T ss_pred CEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-CeEEEeechh
Confidence 999999999999999999999999999875 889999999987 47889999999996 9999999864
No 35
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=8.6e-35 Score=302.47 Aligned_cols=190 Identities=23% Similarity=0.280 Sum_probs=164.2
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEE--EEEEEcCcccch-hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYIT--RNITVSGYPEKQ-ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~--G~i~~~g~~~~~-~~~~~~ 94 (531)
.|+++|++++|+ .+.+|+|+|+.+.+| |||||||||+|+|..++ .+ |+|.++|.+... ...++.
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 5 GIRIDHLRVAYG--ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred EEEEEEEEEEEC--CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCEECCCCCHHHCC
Confidence 478899999985 356889888888766 99999999999998653 45 999999986532 223567
Q ss_pred EEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 95 LGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
+||++|+..++|++||+|+. .....+++++++.++|++..++.+ ||||||+|||||+.+|++|+
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llL 160 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLL 160 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999982 123456888999999998888776 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc--CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDM--GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~--g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||||+|||+.++.++.+.|+++.++ |.|+|++|||++ ++..++|++++|++ |+++..|+++
T Consensus 161 LDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~~g~~~ 224 (362)
T TIGR03258 161 LDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAAHGEPQ 224 (362)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999999999876 799999999987 67889999999986 9999999874
No 36
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-34 Score=281.15 Aligned_cols=186 Identities=25% Similarity=0.356 Sum_probs=154.1
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGY 97 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igy 97 (531)
++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.++|
T Consensus 1 l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYG--SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP--DSGEILIDGRDVTGVPPERRNIGM 76 (213)
T ss_pred CeeeeeEEEeC--CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcCcCchhhccEEE
Confidence 36778888885 356888888777776 99999999999997653 46899999976532 223567999
Q ss_pred EecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 98 CEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
++|++.+++.+|++|+.. .....+++.++.+++.+..++.+ |||||++||++|+.+|++++|||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDE 156 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999998888899998721 11235677899999987666654 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 162 PISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 157 PLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999864 899999999986 56788999999986 8988765
No 37
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.4e-34 Score=295.36 Aligned_cols=190 Identities=26% Similarity=0.311 Sum_probs=160.9
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcce
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARI 94 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ 94 (531)
..++++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.
T Consensus 3 ~~i~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~ 78 (303)
T TIGR01288 3 VAIDLVGVSKSYG--DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPVPSRARLARVA 78 (303)
T ss_pred cEEEEEeEEEEeC--CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECcccHHHHhhc
Confidence 3578899998885 356888888888776 99999999999997653 46999999976432 234678
Q ss_pred EEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
+||++|++.+++.+|++|+.. .....++++++.+++.+..++.+ |||||++||+||+.+|++|+
T Consensus 79 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (303)
T TIGR01288 79 IGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLI 158 (303)
T ss_pred EEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999998721 11234567888999987766665 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 219 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGRP 219 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 99999999999999999999999878999999999987 57788999999986 999999986
No 38
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.2e-34 Score=280.09 Aligned_cols=188 Identities=22% Similarity=0.319 Sum_probs=157.3
Q ss_pred EEEEeEEEEEeCCCc--cccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcce
Q 042733 28 ISLNEIVYSVDMPQI--GDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~--~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ 94 (531)
++++|++++|+...+ ++|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++.
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~ 79 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVVKEPAEARRR 79 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEcccCHHHHHhh
Confidence 578899988853211 6888888888877 99999999999998653 46899999976532 235678
Q ss_pred EEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
++|++|++.+++.+|++|+.. .....+++.++.+++.+..++.+ |||||++||+||+.+|++|+
T Consensus 80 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ill 159 (218)
T cd03266 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLL 159 (218)
T ss_pred EEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999998889899998721 12345678899999987766655 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++...+|++++|++ |+++..|
T Consensus 160 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 160 LDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 99999999999999999999999877999999999986 57788999999986 8987654
No 39
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-34 Score=280.58 Aligned_cols=188 Identities=24% Similarity=0.283 Sum_probs=157.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILG 96 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ig 96 (531)
|+++|++++|+ .+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.++
T Consensus 1 i~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYG--DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVVREPREVRRRIG 76 (220)
T ss_pred CEEEEEEEEEC--CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecCcChHHHhhcEE
Confidence 36788888885 356888888777776 99999999999998653 47899999976431 23456799
Q ss_pred EEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
|++|++.+++.+|++++.. .....+++.++.+++.+..++.+ |||||++||+|++.+|++++||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllD 156 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD 156 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999998889999988721 12345678899999987666655 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|||+|||+.+++.+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (220)
T cd03265 157 EPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGTP 216 (220)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCCh
Confidence 999999999999999999999876 899999999987 57778999999986 999988865
No 40
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-34 Score=297.73 Aligned_cols=191 Identities=23% Similarity=0.294 Sum_probs=160.4
Q ss_pred EEEEeEEEEEeC--CCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hh
Q 042733 28 ISLNEIVYSVDM--PQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ET 90 (531)
Q Consensus 28 l~~~~ls~~~~~--~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~ 90 (531)
|+++|++++|+. .++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~ 79 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDLTALSEKELRK 79 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHH
Confidence 678888888852 1346888888877777 99999999999998653 47999999986532 12
Q ss_pred hcceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
.++.+||++|++.+++.+||.|+.. ....++++.++.+|+.+..++.+ ||||||+|||||+++|
T Consensus 80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p 159 (343)
T PRK11153 80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNP 159 (343)
T ss_pred HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 3577999999999999999999721 12345778899999987766655 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|+++
T Consensus 160 ~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~~~g~~~ 226 (343)
T PRK11153 160 KVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLVEQGTVS 226 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999999999865 899999999987 57788999999986 9999998763
No 41
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.6e-34 Score=279.03 Aligned_cols=186 Identities=24% Similarity=0.314 Sum_probs=156.4
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGY 97 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igy 97 (531)
|+++|++++|+ ++++|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.++|
T Consensus 1 l~~~~l~~~~~--~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYG--KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP--DSGEITFDGKSYQKNIEALRRIGA 76 (208)
T ss_pred CEEEEEEEEEC--CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCCcccchHHHHhhEEE
Confidence 36788888884 356888888887776 99999999999998653 47999999986532 234567999
Q ss_pred EecCCCCCCCCcHHhHHHH-------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 042733 98 CEQNDIHSPHDTLYDFTHC-------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISG 165 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~~-------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsg 165 (531)
++|++.+++..|+.|+... ....+++.++.+++.+..++.+ ||||||+||++|+.+|++++|||||+|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 156 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 9999988999999997321 1345778889999987766655 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 166 LDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 166 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|++++|++ |++++.|
T Consensus 157 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 157 LDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 9999999999999999878899999999987 46678999999986 8988764
No 42
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.7e-34 Score=299.79 Aligned_cols=191 Identities=22% Similarity=0.292 Sum_probs=165.2
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARIL 95 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~i 95 (531)
..|+++|++++|+ ++.+|+++|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.+
T Consensus 13 ~~L~l~~l~~~~~--~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i~~~~~~~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFD--GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDITHVPAENRHV 88 (375)
T ss_pred ceEEEEEEEEEEC--CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHCCE
Confidence 4589999999995 456899999888777 99999999999998653 47999999987532 2235679
Q ss_pred EEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEE
Q 042733 96 GYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISR 159 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllL 159 (531)
||++|+..++|++||.|+.. ....++++.++.+++.+..++.+ ||||||+|||||+.+|++|+|
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLL 168 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLL 168 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999821 12346788899999998888776 999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 160 DEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 160 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||||+|||+.++..+.+.|+++.++ |.|+|++|||+. ++..++|++++|++ |+++..|+++
T Consensus 169 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~~~ 230 (375)
T PRK09452 169 DESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGTPR 230 (375)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999999875 999999999987 67889999999996 9999999864
No 43
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.5e-34 Score=298.48 Aligned_cols=190 Identities=24% Similarity=0.336 Sum_probs=161.8
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILG 96 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~ig 96 (531)
.|+++|++++|+ ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.+|
T Consensus 2 ~L~i~~l~~~~~--~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i~~~~~~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFG--RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDVSRLHARDRKVG 77 (353)
T ss_pred EEEEEEEEEEeC--CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHCCEE
Confidence 367888888885 356888888777766 99999999999998653 46999999986532 22356799
Q ss_pred EEecCCCCCCCCcHHhHHH---------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 97 YCEQNDIHSPHDTLYDFTH---------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~---------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
|++|++.++|++||.|+.. ...+++++.++.+++.+..++.+ ||||||+|||||+.+|++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~l 157 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQI 157 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999998821 12346778899999988877766 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+|||||+|||+.++..+.+.|++++++ |.|+|++||+++ ++..+||++++|++ |+++..|+++
T Consensus 158 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~~~ 222 (353)
T PRK10851 158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGTPD 222 (353)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999999999876 899999999987 67889999999996 9999999864
No 44
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-34 Score=277.28 Aligned_cols=185 Identities=22% Similarity=0.340 Sum_probs=154.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
++++|+++.|+ ++.+++++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..++.++|+
T Consensus 1 l~~~~l~~~~~--~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~-~~~~~i~~~ 75 (210)
T cd03269 1 LEVENVTKRFG--RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP--DSGEVLFDGKPLDI-AARNRIGYL 75 (210)
T ss_pred CEEEEEEEEEC--CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCCchhH-HHHccEEEe
Confidence 35778888774 346788888777776 99999999999998653 47999999987543 345679999
Q ss_pred ecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 99 EQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEP 162 (531)
+|++.+++.+|++|+.. ...+.+++.++.+++.+..++.+ |||||++||++|+.+|++++||||
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP 155 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEP 155 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99999888999998721 12345677889999987666654 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 163 ISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
|+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 156 ~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 156 FSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 9999999999999999999877899999999987 46778999999986 8987654
No 45
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=6.9e-35 Score=264.93 Aligned_cols=173 Identities=24% Similarity=0.314 Sum_probs=154.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEEEecCCCCCCCCcHHhH-----------
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGYCEQNDIHSPHDTLYDF----------- 113 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igyv~Q~~~~~~~ltv~e~----------- 113 (531)
.++.-.+||+|||||||||+|+|...+ .+|+|++||.+... ....|-+++++|+.++|.++||.++
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL 102 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKL 102 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccccc
Confidence 366788899999999999999997653 47999999987643 3456778999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCe
Q 042733 114 THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRT 187 (531)
Q Consensus 114 ~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~t 187 (531)
..+.+++++.++..+|+..+.++.. ||||||++||+|+.+-+||+||||+|.|||.-+.+++.++.+++++ +.|
T Consensus 103 ~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~T 182 (231)
T COG3840 103 NAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMT 182 (231)
T ss_pred CHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCE
Confidence 3556778999999999999988877 8999999999999999999999999999999999999999999864 899
Q ss_pred EEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 188 VVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 188 vi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++++||+|+ ++....|+++++++ ||+.+.|+.+
T Consensus 183 llmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~~ 215 (231)
T COG3840 183 LLMVTHHPE-DAARIADRVVFLDN-GRIAAQGSTQ 215 (231)
T ss_pred EEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccHH
Confidence 999999998 68899999999996 9999999853
No 46
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.5e-34 Score=301.97 Aligned_cols=191 Identities=24% Similarity=0.328 Sum_probs=162.3
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.|+++||+++|+ ++.+|+++|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.
T Consensus 3 ~L~~~nls~~y~--~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l~G~~i~~~~~~~~~~~ 78 (402)
T PRK09536 3 MIDVSDLSVEFG--DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLVAGDDVEALSARAASRR 78 (402)
T ss_pred eEEEeeEEEEEC--CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEcCcCCHHHHhcc
Confidence 467788888874 356788887776666 99999999999997653 46999999976532 345678
Q ss_pred EEEEecCCCCCCCCcHHhHH---------------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 95 LGYCEQNDIHSPHDTLYDFT---------------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~---------------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
+||++|+..+++.+||+|+. ....+++++.++.+++.+..++.+ |||||++|||||+++|
T Consensus 79 ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P 158 (402)
T PRK09536 79 VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQAT 158 (402)
T ss_pred eEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999999998999999872 122356788999999988777765 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
++|+|||||+|||+.++.+++++|++++++|+|||+++|+++ ++.+.|||+++|++ |+++..|++++
T Consensus 159 ~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~G~~~e 225 (402)
T PRK09536 159 PVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAAGPPAD 225 (402)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecCHHH
Confidence 999999999999999999999999999877999999999987 57789999999996 99999998753
No 47
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=3.8e-34 Score=277.35 Aligned_cols=186 Identities=23% Similarity=0.341 Sum_probs=154.6
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGY 97 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igy 97 (531)
++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ...++.++|
T Consensus 1 i~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~~~~~~~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFG--NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVTDLPPKDRDIAM 76 (213)
T ss_pred CEEEeeEEEEC--CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCCcccceEEE
Confidence 36788888885 346888888887777 99999999999998653 46899999976532 123457999
Q ss_pred EecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 98 CEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
++|++.+++..|++|+.. ...+.+++.++.+++.+..++.+ |||||++||++|+.+|++++|||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDE 156 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE 156 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999998888899998721 12345677889999987766654 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 162 PISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
||+|||+.+++.+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 157 PLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 99999999999999999999874 899999999986 57778999999986 9998765
No 48
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-34 Score=299.04 Aligned_cols=192 Identities=21% Similarity=0.315 Sum_probs=165.6
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcce
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARI 94 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~ 94 (531)
...|+++|++++|+ ++.+|+++|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.
T Consensus 17 ~~~l~l~~v~~~~~--~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i~~~~~~~r~ 92 (377)
T PRK11607 17 TPLLEIRNLTKSFD--GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDLSHVPPYQRP 92 (377)
T ss_pred CceEEEEeEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHCC
Confidence 44689999999995 356899999888877 99999999999998653 47999999986532 234678
Q ss_pred EEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 95 LGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
+||++|+..++|++||.|+. .+..+++++.++.+++.+..++.+ ||||||+|||||+.+|++|+
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL 172 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLL 172 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999982 122456788899999998877765 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||||+|||+.++..+.+.|+++.++ |.|+|++|||++ ++..++|++++|++ |+++..|+++
T Consensus 173 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~~~ 235 (377)
T PRK11607 173 LDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGEPE 235 (377)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcCHH
Confidence 99999999999999999999998764 899999999987 67889999999996 9999999864
No 49
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.5e-34 Score=281.26 Aligned_cols=189 Identities=21% Similarity=0.271 Sum_probs=157.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh-hcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-FARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-~~~~ 94 (531)
++++|++++|+ .+.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... .. .++.
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~ 76 (232)
T cd03218 1 LRAENLSKRYG--KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDITKLPMHKRARLG 76 (232)
T ss_pred CeEEEEEEEeC--CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccCCHhHHHhcc
Confidence 36788888885 356888888877776 99999999999998653 46899999976432 12 2456
Q ss_pred EEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
++|++|++.+++.+|++|+.. .....+++.++.+++.+..++.+ |||||++||++|+.+|++|+
T Consensus 77 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 156 (232)
T cd03218 77 IGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLL 156 (232)
T ss_pred EEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999998721 12235677889999987666655 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+.+
T Consensus 157 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 218 (232)
T cd03218 157 LDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGTPE 218 (232)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeCHH
Confidence 99999999999999999999999877999999999987 57889999999986 9999888753
No 50
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-34 Score=278.57 Aligned_cols=189 Identities=24% Similarity=0.330 Sum_probs=155.0
Q ss_pred EEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 28 ISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 28 l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
++++|++++|+... +.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. ..++.++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~--~~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVT--GPGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECc--cccCcEE
Confidence 35778888775211 45788888777766 99999999999998653 4689999997653 2456799
Q ss_pred EEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
|++|++.+++.+|++|+.. .....+++.++.+++.+..++.+ |||||++||+||+.+|++++||
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD 156 (220)
T cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD 156 (220)
T ss_pred EEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 9999998888899998721 12345778899999987666554 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEcc-CceeeecCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQ-VGQEISVGPL 221 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~-~G~~v~~G~~ 221 (531)
|||+|||+.++..+.+.|+++++ .|+|||++||+++ ++...||++++|++ +|+++..++.
T Consensus 157 EPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 157 EPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 99999999999999999999865 4899999999987 46788999999983 3999888765
No 51
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=4.7e-34 Score=291.17 Aligned_cols=189 Identities=22% Similarity=0.361 Sum_probs=160.5
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARIL 95 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~i 95 (531)
.++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.+
T Consensus 2 ~l~~~~l~~~~~--~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~--~~G~i~i~g~~~~~~~~~~~~~i 77 (301)
T TIGR03522 2 SIRVSSLTKLYG--TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP--DSGSVQVCGEDVLQNPKEVQRNI 77 (301)
T ss_pred EEEEEEEEEEEC--CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccChHHHHhce
Confidence 367888888884 456888888777766 99999999999998653 47999999976532 2356789
Q ss_pred EEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEE
Q 042733 96 GYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISR 159 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllL 159 (531)
||++|++.+++.+|+.|+.. ....++++.++.+|+.+..++.+ |||||++||+||+++|++|+|
T Consensus 78 g~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliL 157 (301)
T TIGR03522 78 GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLIL 157 (301)
T ss_pred EEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999821 11345788899999988777766 999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 160 DEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 160 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||||+|||+.+++.+++.|+++++ ++|||++||+++ ++.+.||++++|++ |++++.|+++
T Consensus 158 DEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~~ 217 (301)
T TIGR03522 158 DEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKLD 217 (301)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999865 799999999987 68889999999996 9999999863
No 52
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-34 Score=298.50 Aligned_cols=190 Identities=21% Similarity=0.282 Sum_probs=159.1
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILG 96 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~ig 96 (531)
.|+++|++++|+ ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.+|
T Consensus 3 ~l~i~~l~~~~~--~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYG--DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRMNDVPPAERGVG 78 (369)
T ss_pred EEEEEEEEEEeC--CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECCCCCHhHCCEE
Confidence 367777777774 345777777776665 99999999999998653 46999999976532 12346799
Q ss_pred EEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
|++|+..+++.+||+|+.. ....++++.++.+++.+..++.+ ||||||+|||||+.+|++|+||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLD 158 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999999821 22346788899999988777665 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||+|||+.+++.+.+.|+++.++ |.|+|++||+++ ++...||++++|++ |+++..|+++
T Consensus 159 EPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~~~ 219 (369)
T PRK11000 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPL 219 (369)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999875 899999999987 57889999999996 9999999864
No 53
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4.5e-34 Score=278.20 Aligned_cols=189 Identities=21% Similarity=0.348 Sum_probs=156.6
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILG 96 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ig 96 (531)
|+++|+++.|+...+++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++.++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP--TSGTAYINGYSIRTDRKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccchHHHhhhEE
Confidence 3678888888532256888888877777 99999999999998653 47899999976532 23456799
Q ss_pred EEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
|++|++.+++..|++++.. .....+++.++.+++.+..++.+ |||||++||++|+.+|++++||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 158 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD 158 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 9999998888999998721 11245677889999987666654 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|||+|||+.+++.+.+.|+++++ ++|||++||+++ .+.+.||++++|++ |+++..|++
T Consensus 159 EP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 159 EPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999876 599999999987 46678999999986 999998875
No 54
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=4.8e-34 Score=277.68 Aligned_cols=183 Identities=25% Similarity=0.331 Sum_probs=149.0
Q ss_pred EEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchh------h
Q 042733 28 ISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQE------T 90 (531)
Q Consensus 28 l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~------~ 90 (531)
|+++|++++|+..+ +.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~ 78 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDISKLSEKELAA 78 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC--CceeEEECCEehhhcchhHHHH
Confidence 35778888875321 46788888777766 99999999999998653 479999999765321 1
Q ss_pred -hcceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhC
Q 042733 91 -FARILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVAN 153 (531)
Q Consensus 91 -~~~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~ 153 (531)
.++.++|++|++.+++.+|++|+.. .....+++.++.+|+.+..++.+ |||||++||++|+.+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 158 (218)
T cd03255 79 FRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAND 158 (218)
T ss_pred HHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccC
Confidence 2457999999999999999998721 12345778899999987666654 999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++. +. .||++++|++ |++
T Consensus 159 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~-G~i 218 (218)
T cd03255 159 PKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRD-GKI 218 (218)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeC-CcC
Confidence 999999999999999999999999999987 58999999999873 44 8999999986 763
No 55
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=4.2e-34 Score=282.63 Aligned_cols=190 Identities=21% Similarity=0.233 Sum_probs=156.9
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hhhc
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ETFA 92 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~~~ 92 (531)
++++|++++|+ .++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..++
T Consensus 2 l~~~~l~~~~~-~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR02315 2 LEVENLSKVYP-NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDITKLRGKKLRKLR 78 (243)
T ss_pred eEEEeeeeecC-CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEhhhCCHHHHHHHH
Confidence 57788888874 1346888888777766 99999999999998653 47999999976432 1246
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH-------------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHH
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH-------------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAV 148 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~-------------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~ 148 (531)
+.++|++|++.+++.+|++|+.. ....++.+.++.+++.+..++.+ ||||||+||+
T Consensus 79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 158 (243)
T TIGR02315 79 RRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIAR 158 (243)
T ss_pred hheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 67999999998888899988731 12235677889999987666554 9999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.||++++|++ |+++..|+++
T Consensus 159 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 231 (243)
T TIGR02315 159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA-GEIVFDGAPS 231 (243)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecCCHH
Confidence 999999999999999999999999999999999764 899999999987 46788999999986 9999988764
No 56
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-34 Score=280.02 Aligned_cols=189 Identities=24% Similarity=0.331 Sum_probs=157.2
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchh-hhcceEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQE-TFARILG 96 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~-~~~~~ig 96 (531)
.++++|+++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.... ..++.++
T Consensus 2 ~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFG--DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDATDVPVQERNVG 77 (239)
T ss_pred EEEEEeEEEEEC--CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCCccccceE
Confidence 468888888885 356888888877766 99999999999998653 479999999765321 2245799
Q ss_pred EEecCCCCCCCCcHHhHHHH---------------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 97 YCEQNDIHSPHDTLYDFTHC---------------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~~---------------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
|++|++.+++.+|+.|+... ....+++.++.+++.+..++.+ |||||++||+||+.+|++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 157 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKV 157 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999988888999987210 1234567789999987666654 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|||||+|||+.+++.+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 221 (239)
T cd03296 158 LLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVGTP 221 (239)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCH
Confidence 9999999999999999999999999875 899999999986 46788999999986 999998875
No 57
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=5.7e-34 Score=278.89 Aligned_cols=187 Identities=21% Similarity=0.245 Sum_probs=153.9
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCC-----CCceEEEEEEEcCcccch-----
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRK-----PGGYITRNITVSGYPEKQ----- 88 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~-----~~g~~~G~i~~~g~~~~~----- 88 (531)
|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|.. + ..+|+|.++|.+...
T Consensus 1 i~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g~~~~~~~~~~ 76 (227)
T cd03260 1 IELRDLNVYYG--DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDGKDIYDLDVDV 76 (227)
T ss_pred CEEEEEEEEcC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECCEEhhhcchHH
Confidence 36778888874 346788888777777 999999999999976 4 357999999976432
Q ss_pred hhhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCchhhhcc-------HHHHHHHHHHHH
Q 042733 89 ETFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNPFRQAL-------FEQRKRLTVAVE 149 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~~~~~~-------~GerqRv~iA~a 149 (531)
..+++.++|++|++.++ .+||+|+.. ....++++.++.+++.+..+.. .|||||++||++
T Consensus 77 ~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~a 155 (227)
T cd03260 77 LELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARA 155 (227)
T ss_pred HHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHH
Confidence 23466799999998877 789998721 1234567788999997654332 399999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ ++.+.||++++|++ |+++..|+++
T Consensus 156 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 225 (227)
T cd03260 156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GRLVEFGPTE 225 (227)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEecCcc
Confidence 99999999999999999999999999999999877 99999999987 56778999999986 9999998764
No 58
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-34 Score=281.29 Aligned_cols=189 Identities=22% Similarity=0.264 Sum_probs=155.4
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hhhcc
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ETFAR 93 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~~~~ 93 (531)
+++|++++|+. ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++
T Consensus 2 ~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 2 EVENLSKTYPN-GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred EEeeEEEecCC-ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEeccccCHhHHHHHHh
Confidence 57788887752 145788888777766 99999999999998653 46899999976432 23456
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-------------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHH
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-------------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVE 149 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-------------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~a 149 (531)
.++|++|++.+++.+|++|+.. .....+.+.++.+++.+..++.+ ||||||+||++
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 158 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARA 158 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHH
Confidence 7999999998888899988731 11234667788999987666554 99999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...||++++|++ |+++..|+++
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 230 (241)
T cd03256 159 LMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD-GRIVFDGPPA 230 (241)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCHH
Confidence 99999999999999999999999999999999864 899999999987 57778999999986 9999988753
No 59
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=9.3e-34 Score=279.78 Aligned_cols=188 Identities=19% Similarity=0.229 Sum_probs=158.3
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-----hhhcc
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-----ETFAR 93 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-----~~~~~ 93 (531)
++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++
T Consensus 2 l~~~~l~~~~~--~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~ 77 (240)
T PRK09493 2 IEFKNVSKHFG--PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI--TSGDLIVDGLKVNDPKVDERLIRQ 77 (240)
T ss_pred EEEEeEEEEEC--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCChhHHHHhh
Confidence 57888888885 356888888888777 99999999999998653 47999999976432 23466
Q ss_pred eEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
.++|++|++.+++.+|+.++.. .....+.+.++.+|+.+..++.+ |||||++||++|+.+|++
T Consensus 78 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 157 (240)
T PRK09493 78 EAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL 157 (240)
T ss_pred ceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 7999999998888899988721 11234677889999987666654 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 220 (240)
T PRK09493 158 MLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAEDGDP 220 (240)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeCCH
Confidence 9999999999999999999999999877999999999987 46778999999986 999998875
No 60
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.1e-34 Score=276.49 Aligned_cols=182 Identities=25% Similarity=0.336 Sum_probs=146.8
Q ss_pred EEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEec
Q 042733 30 LNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQ 100 (531)
Q Consensus 30 ~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q 100 (531)
++|++++|+.. +.+|+++|+.+.+| |||||||||+|+|..++ .+|+|.++|.+......++.++|++|
T Consensus 2 ~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~i~~~~q 78 (205)
T cd03226 2 IENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKAKERRKSIGYVMQ 78 (205)
T ss_pred cccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEhhhHHhhcceEEEec
Confidence 45666666421 45677777666655 99999999999998653 47999999987543445667999999
Q ss_pred CCC-CCCCCcHHhHHHH-------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 042733 101 NDI-HSPHDTLYDFTHC-------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLD 167 (531)
Q Consensus 101 ~~~-~~~~ltv~e~~~~-------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD 167 (531)
++. .++..|+.|+... ....+++.++.+++.+..++.+ |||||++|||+|+.+|++++|||||+|||
T Consensus 79 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 79 DVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred ChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 964 3446799987321 1235778899999987766654 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceee
Q 042733 168 ARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI 216 (531)
Q Consensus 168 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v 216 (531)
+.+++.+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 99999999999999878999999999987 46778999999986 8864
No 61
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=7.4e-34 Score=279.66 Aligned_cols=188 Identities=23% Similarity=0.297 Sum_probs=156.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh-hcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-FARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-~~~~ 94 (531)
++++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... .. .++.
T Consensus 1 l~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~ 76 (236)
T cd03219 1 LEVRGLTKRFG--GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP--TSGSVLFDGEDITGLPPHEIARLG 76 (236)
T ss_pred CeeeeeEEEEC--CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEECCCCCHHHHHhcC
Confidence 35778888885 346888888777766 99999999999998653 46899999976532 12 2456
Q ss_pred EEEEecCCCCCCCCcHHhHHH---------------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHH
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH---------------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAV 148 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~---------------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~ 148 (531)
++|++|++.+++.+|++|+.. .....+++.++.+++.+..++.+ ||||||+||+
T Consensus 77 i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 77 IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred EEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHH
Confidence 999999999999999998721 11235677889999987666655 9999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-GRVIAEGTP 227 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEeecCH
Confidence 999999999999999999999999999999999878999999999987 57788999999986 999988875
No 62
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-34 Score=266.60 Aligned_cols=191 Identities=20% Similarity=0.280 Sum_probs=157.8
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCC---CCceEEEEEEEcCcccc-----h
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRK---PGGYITRNITVSGYPEK-----Q 88 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~---~~g~~~G~i~~~g~~~~-----~ 88 (531)
..++++||++.|+ ++.+|+|||+.+.+| |||||||||++.... ++..++|+|.++|.++. .
T Consensus 6 ~~~~~~~l~~yYg--~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYG--DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEEC--chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 4578999999996 678898888766554 999999999999853 44578999999998653 2
Q ss_pred hhhcceEEEEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCch-hhhcc--------HHHHHHHHHHH
Q 042733 89 ETFARILGYCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNP-FRQAL--------FEQRKRLTVAV 148 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~-~~~~~--------~GerqRv~iA~ 148 (531)
..+|+++|+|+|.++.|| ++++|+ .+...+.++..|+...|-+ ..|++ .|||||++|||
T Consensus 84 ~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIAR 162 (253)
T COG1117 84 VELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHH
Confidence 457899999999999999 999998 1233455666776665532 22222 29999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||+.+|+||+||||||+|||.+..+|-+++.+|+ +.-|||++||.+. ...+..|+..++.. |+++.+|+.+
T Consensus 163 alAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G~LvE~g~T~ 233 (253)
T COG1117 163 ALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-GELVEFGPTD 233 (253)
T ss_pred HHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-cEEEEEcCHH
Confidence 9999999999999999999999999999999997 4689999999987 46788999999996 9999999864
No 63
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-34 Score=278.85 Aligned_cols=190 Identities=22% Similarity=0.303 Sum_probs=156.7
Q ss_pred EEEEeEEEEEeCC--CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hh
Q 042733 28 ISLNEIVYSVDMP--QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ET 90 (531)
Q Consensus 28 l~~~~ls~~~~~~--~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~ 90 (531)
|+++|++++|+.. .+++|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~ 79 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLTLLSGKELRK 79 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcccCCHHHHHH
Confidence 5778888887521 126888888777766 99999999999998653 46899999986532 12
Q ss_pred hcceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
.++.++|++|++.+++.+|+.|+.. .....+++.++.+++.+..++.+ |||||++||++|+.+|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (233)
T cd03258 80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP 159 (233)
T ss_pred HHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 3567999999999999999998721 11235677899999987666654 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 225 (233)
T cd03258 160 KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVVEEGTV 225 (233)
T ss_pred CEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999999999999875 899999999986 57788999999986 999988874
No 64
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-33 Score=276.31 Aligned_cols=190 Identities=20% Similarity=0.291 Sum_probs=154.7
Q ss_pred EEEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---h---
Q 042733 27 YISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---E--- 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~--- 89 (531)
.++++|+++.|+.+. +.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... .
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCCHHHHH
Confidence 478888888885322 35888888877776 99999999999998653 47999999976532 1
Q ss_pred hh-cceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhh
Q 042733 90 TF-ARILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVA 152 (531)
Q Consensus 90 ~~-~~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~ 152 (531)
.. ++.++|++|++.+++.+|++|+.. ....++++.++.+|+.+..++.+ |||||++||++|+.
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~ 162 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVN 162 (233)
T ss_pred HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 12 256999999998888899998721 12345778899999987666554 99999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++. +. .+|++++|++ |+++..|+.
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~-~~~~~~~l~~-G~i~~~~~~ 229 (233)
T PRK11629 163 NPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AK-RMSRQLEMRD-GRLTAELSL 229 (233)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HH-hhCEEEEEEC-CEEEEEecc
Confidence 9999999999999999999999999999976 58999999999873 44 4689999986 999988764
No 65
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-33 Score=285.90 Aligned_cols=191 Identities=18% Similarity=0.278 Sum_probs=156.9
Q ss_pred EEEEeEEEEEeCCC---ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-----hh
Q 042733 28 ISLNEIVYSVDMPQ---IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-----ET 90 (531)
Q Consensus 28 l~~~~ls~~~~~~~---~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-----~~ 90 (531)
|+++||+++|+... +.+|+|||+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEECCCcCccHHH
Confidence 68888888885321 36888888888777 99999999999998653 47899999977532 24
Q ss_pred hcceEEEEecCCC-CCCCCcHHhHH-----------HHHHHHHHHHHHhcCCc--hhhhccH-----HHHHHHHHHHHHh
Q 042733 91 FARILGYCEQNDI-HSPHDTLYDFT-----------HCLYMFIEEGMELVELN--PFRQALF-----EQRKRLTVAVEFV 151 (531)
Q Consensus 91 ~~~~igyv~Q~~~-~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~--~~~~~~~-----GerqRv~iA~aL~ 151 (531)
.++.+||++|++. .+...||+|+. .+...+++++++.+|+. +..++.+ |||||++||+||+
T Consensus 81 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~ 160 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA 160 (287)
T ss_pred HhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence 5678999999863 33457998872 12234578889999996 5556554 9999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
.+|++|+|||||+|||+.++.++++.|++++++ |+|||++||+++ ++...||++++|++ |++++.|+++
T Consensus 161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~i~~~g~~~ 230 (287)
T PRK13637 161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GKCELQGTPR 230 (287)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999999875 999999999986 56778999999986 9999999763
No 66
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.3e-33 Score=273.82 Aligned_cols=183 Identities=22% Similarity=0.331 Sum_probs=151.4
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hhhc
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ETFA 92 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~~~ 92 (531)
++++|+++.|+. .+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...+
T Consensus 1 l~~~~l~~~~~~-~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~ 77 (214)
T cd03292 1 IEFINVTKTYPN-GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSDLRGRAIPYLR 77 (214)
T ss_pred CEEEEEEEEeCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcccCCHHHHHHHH
Confidence 367888888852 246888888887777 99999999999998653 46899999976431 1345
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
+.++|++|++.+++.+|++|+.. ...+.+++.++.+++.+..++.+ |||||++||++|+.+|++
T Consensus 78 ~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 157 (214)
T cd03292 78 RKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI 157 (214)
T ss_pred HheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCE
Confidence 67999999999999999998721 12235677889999987766654 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||++++|++ |++
T Consensus 158 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~~ 214 (214)
T cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GKL 214 (214)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CcC
Confidence 9999999999999999999999999777999999999986 46678999999985 763
No 67
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.6e-33 Score=279.72 Aligned_cols=189 Identities=24% Similarity=0.282 Sum_probs=156.3
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---------
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--------- 88 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--------- 88 (531)
.++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~ 78 (250)
T PRK11264 3 AIEVKNLVKKFH--GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITIDTARSLSQQKG 78 (250)
T ss_pred cEEEeceEEEEC--CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccccccchhh
Confidence 367888888884 346788888777766 99999999999998653 46899998875421
Q ss_pred --hhhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHH
Q 042733 89 --ETFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVE 149 (531)
Q Consensus 89 --~~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~a 149 (531)
...++.++|++|++.+++..|+.|+.. .....+.+.++.+|+.+..++.+ |||||++||++
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~a 158 (250)
T PRK11264 79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARA 158 (250)
T ss_pred HHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHH
Confidence 234567999999998888899998731 11234677888899987666554 99999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 159 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 228 (250)
T PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ-GRIVEQGPA 228 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999877999999999987 57788999999986 999998875
No 68
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.2e-33 Score=274.05 Aligned_cols=182 Identities=22% Similarity=0.341 Sum_probs=150.7
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hhhc
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ETFA 92 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~~~ 92 (531)
++++|++++|+ +++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..++
T Consensus 2 l~~~~l~~~~~-~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~ 78 (214)
T TIGR02673 2 IEFHNVSKAYP-GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVNRLRGRQLPLLR 78 (214)
T ss_pred EEEEeeeEEeC-CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcccCCHHHHHHHH
Confidence 57888888884 2346888888777776 99999999999998653 47899999976532 1245
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
+.++|++|++.+++..|+.|+.. .....+++.++.+++.+..++.+ |||||++||++|+.+|++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 158 (214)
T TIGR02673 79 RRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPL 158 (214)
T ss_pred hheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE
Confidence 67999999998888999998721 12345678889999987655544 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...||++++|++ |+
T Consensus 159 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~ 214 (214)
T TIGR02673 159 LLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDD-GR 214 (214)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecC-CC
Confidence 9999999999999999999999999877999999999987 57778999999985 64
No 69
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-33 Score=286.83 Aligned_cols=192 Identities=22% Similarity=0.260 Sum_probs=157.8
Q ss_pred EEEEEeEEEEEeCCC---ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc-------
Q 042733 27 YISLNEIVYSVDMPQ---IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK------- 87 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~---~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~------- 87 (531)
.|+++|++++|+... ..+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~~~~~~~~ 79 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEKNKKKTKE 79 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceeccccccccc
Confidence 378999999996322 25899999888877 99999999999998653 3588888875421
Q ss_pred --------------------hhhhcceEEEEecCC-CCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCc-hhh
Q 042733 88 --------------------QETFARILGYCEQND-IHSPHDTLYDFT-----------HCLYMFIEEGMELVELN-PFR 134 (531)
Q Consensus 88 --------------------~~~~~~~igyv~Q~~-~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~-~~~ 134 (531)
....++.+||++|++ ..+...||+|+. .....++++.++.+|+. +..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~ 159 (305)
T PRK13651 80 KEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYL 159 (305)
T ss_pred ccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh
Confidence 123567899999985 344567998872 12345678899999996 566
Q ss_pred hccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE
Q 042733 135 QALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL 209 (531)
Q Consensus 135 ~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL 209 (531)
++.+ ||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.|||+++|
T Consensus 160 ~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~adrv~vl 238 (305)
T PRK13651 160 QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD-NVLEWTKRTIFF 238 (305)
T ss_pred hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-HHHHhCCEEEEE
Confidence 6655 9999999999999999999999999999999999999999999877999999999986 477889999999
Q ss_pred ccCceeeecCCCC
Q 042733 210 KQVGQEISVGPLG 222 (531)
Q Consensus 210 ~~~G~~v~~G~~~ 222 (531)
++ |++++.|+++
T Consensus 239 ~~-G~i~~~g~~~ 250 (305)
T PRK13651 239 KD-GKIIKDGDTY 250 (305)
T ss_pred EC-CEEEEECCHH
Confidence 86 9999999864
No 70
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-34 Score=272.96 Aligned_cols=188 Identities=22% Similarity=0.336 Sum_probs=159.2
Q ss_pred EEEEeEEEEEeCCCccccccEE---------EEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLS---------GAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs---------~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
+++++|+++++ ++.+++|+| |.+|||||||||++|+|.|..++ .+|+|.++|.+.+. ..+.+|||+
T Consensus 3 L~ie~vtK~Fg--~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~--~~G~I~~~g~~~~~-~~~~rIGyL 77 (300)
T COG4152 3 LEIEGVTKSFG--DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP--TEGEITWNGGPLSQ-EIKNRIGYL 77 (300)
T ss_pred eEEecchhccC--ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc--cCceEEEcCcchhh-hhhhhcccC
Confidence 34555555553 344555555 55555599999999999998763 57999999998764 345679999
Q ss_pred ecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 99 EQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEP 162 (531)
|++..++|.+||.|. ..+.+...+..|+.+++......++ |++|++.+-.+++++|++++||||
T Consensus 78 PEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEP 157 (300)
T COG4152 78 PEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEP 157 (300)
T ss_pred hhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCC
Confidence 999999999999986 3455677889999999987776666 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 163 ISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||.+.+.+.+.+.+++++|.|||+++|.++ .+.++||++++|++ |+.|..|+..
T Consensus 158 FSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v~ 215 (300)
T COG4152 158 FSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVE 215 (300)
T ss_pred ccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccHH
Confidence 9999999999999999999999999999999987 58899999999996 9999999863
No 71
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=7.2e-34 Score=289.96 Aligned_cols=183 Identities=24% Similarity=0.322 Sum_probs=156.4
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEEEEecCCCCCC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILGYCEQNDIHSP 106 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~igyv~Q~~~~~~ 106 (531)
.++|+|+++.. ..+.+.+||||||||||+|+|+|..++ .+|+|.++|.+... ...++.+||++|++.+++
T Consensus 8 ~l~~vs~~i~~------Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 8 AVDGVNFKVRE------GEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred EEeeeeEEEcC------CcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCHHHHHhhcEEecCCCCCCC
Confidence 57788887753 256788889999999999999998653 47999999976532 235667999999999999
Q ss_pred CCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 042733 107 HDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARA 170 (531)
Q Consensus 107 ~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~ 170 (531)
.+|++|+.. ....++++.++.+++.+..++.+ ||||||+||+||+++|++|+|||||+|||+.+
T Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 159 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT 159 (302)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 999998721 12345778899999987777765 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 171 ATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 171 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++.+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 160 ~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 160 RRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999878999999999987 67789999999986 999999985
No 72
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-33 Score=285.99 Aligned_cols=191 Identities=20% Similarity=0.231 Sum_probs=157.7
Q ss_pred EEEEeEEEEEeCCC---ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc-------h
Q 042733 28 ISLNEIVYSVDMPQ---IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK-------Q 88 (531)
Q Consensus 28 l~~~~ls~~~~~~~---~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~-------~ 88 (531)
++++|++++|+..+ .++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. .
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~ 80 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTIGERVITAGKKNKKL 80 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECccccccchH
Confidence 78999999996322 46999999888877 99999999999998653 4699999998652 1
Q ss_pred hhhcceEEEEecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHHHH
Q 042733 89 ETFARILGYCEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAVEF 150 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~aL 150 (531)
...++.+||++|++. .+...||.|+.. ....+++++++.++|. +..++.+ ||||||+||++|
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 81 KPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 235667999999862 233579988721 1234678889999996 5555554 999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+.+|++|+|||||+|||+.++..+.++|++++++ |.|||++||+++ ++.+.|||+++|++ |++++.|+++
T Consensus 161 ~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~-G~i~~~g~~~ 231 (290)
T PRK13634 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK-GTVFLQGTPR 231 (290)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999865 999999999987 57788999999986 9999999753
No 73
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-33 Score=285.07 Aligned_cols=191 Identities=24% Similarity=0.319 Sum_probs=157.0
Q ss_pred EEEEeEEEEEeCCC---ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc-------h
Q 042733 28 ISLNEIVYSVDMPQ---IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK-------Q 88 (531)
Q Consensus 28 l~~~~ls~~~~~~~---~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~-------~ 88 (531)
|+++|++++|+... +.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. .
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTVGDIVVSSTSKQKEI 79 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEECccccccccH
Confidence 68999999996322 25899999988877 99999999999998653 4689999998652 1
Q ss_pred hhhcceEEEEecCCC-CCCCCcHHhHH-----------HHHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHHHH
Q 042733 89 ETFARILGYCEQNDI-HSPHDTLYDFT-----------HCLYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAVEF 150 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~-~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~aL 150 (531)
...++.+||++|++. .+...||.++. .....++.+.++.+++. +..++.+ |||||++||++|
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 235678999999862 33346998872 12234577888999995 4555544 999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+++
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G~i~~~g~~~ 229 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-GHIISCGTPS 229 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999877999999999986 56788999999996 9999999864
No 74
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-33 Score=277.67 Aligned_cols=189 Identities=21% Similarity=0.276 Sum_probs=159.0
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---------h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---------Q 88 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---------~ 88 (531)
.++++|+++.|+ .+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. .
T Consensus 2 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~ 77 (242)
T PRK11124 2 SIQLNGINCFYG--AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred EEEEEeeEEEEC--CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecccccccchhhH
Confidence 468889998885 356899999888777 99999999999998653 4689999997541 1
Q ss_pred hhhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHh
Q 042733 89 ETFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFV 151 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~ 151 (531)
...++.++|++|++.+++.+|+.|+.. .....+.+.++.+|+.+..++.+ |||||++|||+|+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 157 (242)
T PRK11124 78 RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 234567999999999999999998732 11234677888999987666655 9999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|++++|.+ |++++.|++
T Consensus 158 ~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 225 (242)
T PRK11124 158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-GHIVEQGDA 225 (242)
T ss_pred cCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999877999999999987 46678999999986 999998875
No 75
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2.5e-33 Score=274.34 Aligned_cols=191 Identities=30% Similarity=0.476 Sum_probs=158.1
Q ss_pred EEEEeEEEEEeCC--CccccccEEEEEcCC---------CchHHHHHHHHhCCCCC-ceEEEEEEEcCcccchhhhcceE
Q 042733 28 ISLNEIVYSVDMP--QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG-GYITRNITVSGYPEKQETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~--~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~-g~~~G~i~~~g~~~~~~~~~~~i 95 (531)
+.++|+++.++.. .+++|+|+|+.+.+| |||||||+|+|+|..+. ...+|++.++|.+......++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i 83 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCV 83 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccE
Confidence 5788999999644 267999999888877 99999999999997641 12579999999876544567789
Q ss_pred EEEecCCCCCCCCcHHhHHHH--------------HHHHHHH-HHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCC
Q 042733 96 GYCEQNDIHSPHDTLYDFTHC--------------LYMFIEE-GMELVELNPFRQALF-----EQRKRLTVAVEFVANPS 155 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~~--------------~~~~~~~-~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ 155 (531)
+|++|++.+++.+|++|+... ....+++ .++.+++.+..++.+ |||||++||++|+.+|+
T Consensus 84 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 163 (226)
T cd03234 84 AYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPK 163 (226)
T ss_pred EEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCC
Confidence 999999999999999987210 0112344 678888876655443 99999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 156 IISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
+++|||||+|||+.++..+.+.|++++++|.|+|+++|++..++.+.||++++|++ |++++.|
T Consensus 164 illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 164 VLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999877999999999985468889999999996 9998765
No 76
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-33 Score=272.46 Aligned_cols=184 Identities=27% Similarity=0.400 Sum_probs=150.5
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCC--------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEEEE
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPG--------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILGYC 98 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~g--------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~igyv 98 (531)
+++|+++.|+ ++.+++|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.++|+
T Consensus 2 ~~~~~~~~~~--~~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~ 77 (211)
T cd03264 2 QLENLTKRYG--KKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVLKQPQKLRRRIGYL 77 (211)
T ss_pred EEEEEEEEEC--CEEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCccccchHHHHhheEEe
Confidence 5677777774 245777777666554 99999999999997653 46899999976532 2346779999
Q ss_pred ecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 99 EQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEP 162 (531)
+|++.+++.+|+.|+.. .....+++.++.+++.+..++.+ |||||++||++|+.+|++++||||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 157 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157 (211)
T ss_pred cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999999999998721 11345677889999987666655 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 163 ISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
|+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.+|++++|++ |+++..|
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 158 TAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred cccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999999976 589999999987 46678999999986 8988764
No 77
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-33 Score=277.73 Aligned_cols=188 Identities=24% Similarity=0.336 Sum_probs=155.5
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceEE
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARILG 96 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ig 96 (531)
+++|++++|+.. +.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.++
T Consensus 2 ~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 2 EFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred EEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcCcCChHHhhcceE
Confidence 577888887521 45788888777766 99999999999998653 46899999976432 23456799
Q ss_pred EEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCch--hhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 97 YCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNP--FRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~--~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
|++|++.+++.+|++|+.. .....+.+.++.+++.+ ..++.+ ||||||+||++|+.+|++++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 158 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLL 158 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998721 12345678889999985 555554 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++.|++
T Consensus 159 lDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 220 (242)
T cd03295 159 MDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQVGTP 220 (242)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999875 899999999986 56788999999986 999988875
No 78
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-33 Score=282.06 Aligned_cols=190 Identities=24% Similarity=0.318 Sum_probs=157.2
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.++++|+++.|+. .+.+|+|+|+.+.+| |||||||+++|+|..++ .+|+|.++|.+... ...++.
T Consensus 4 ~l~~~~l~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~ 80 (274)
T PRK13647 4 IIEVEDLHFRYKD-GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREVNAENEKWVRSK 80 (274)
T ss_pred eEEEEEEEEEeCC-CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEECCCCCHHHHHhh
Confidence 4678888888842 245888888887777 99999999999997653 46999999976532 234567
Q ss_pred EEEEecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 95 LGYCEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 95 igyv~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
+||++|++. .++..||.|+.. .....+++.++.+++.+..++.+ |||||++||+||+.+|++|
T Consensus 81 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 160 (274)
T PRK13647 81 VGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVI 160 (274)
T ss_pred EEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999863 455679988721 12345678889999987766665 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|||||+|||+.++.++.+.|++++++|.|||++||+++ .+.+.||++++|++ |++++.|++
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 222 (274)
T PRK13647 161 VLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAEGDK 222 (274)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999877999999999987 46678999999986 999999985
No 79
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2e-33 Score=280.26 Aligned_cols=188 Identities=19% Similarity=0.192 Sum_probs=152.9
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc-----------
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK----------- 87 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~----------- 87 (531)
++++||++.|+ ++.+|+|+|+.+.+| |||||||+++|+|..++ .+|++.++|.+..
T Consensus 6 l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 6 LNVIDLHKRYG--EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred EEEeeeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEccccccccccccc
Confidence 56666666664 245666666666655 99999999999998653 4689999997542
Q ss_pred -----hhhhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCchhh-hccH-----HHHHHH
Q 042733 88 -----QETFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNPFR-QALF-----EQRKRL 144 (531)
Q Consensus 88 -----~~~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~~~-~~~~-----GerqRv 144 (531)
...+++.++|++|++.+++.+|++|+.. ....++.+.++.+|+.+.. ++.+ |||||+
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv 161 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRV 161 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH
Confidence 1234678999999999998899998832 1234567789999997653 4433 999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|||||+.+|++++|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++...||++++|++ |++++.|++
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 162 SIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGAP 236 (257)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999999999999999877999999999987 56778999999986 999998875
No 80
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-33 Score=278.85 Aligned_cols=188 Identities=20% Similarity=0.215 Sum_probs=159.9
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..|+++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. ..++.++
T Consensus 11 ~~l~i~~l~~~~~--~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~--~~~~~i~ 84 (257)
T PRK11247 11 TPLLLNAVSKRYG--ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPLA--EAREDTR 84 (257)
T ss_pred CcEEEEEEEEEEC--CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEHH--HhhCceE
Confidence 3589999999995 357999999888877 99999999999998653 4689999886542 3567799
Q ss_pred EEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 042733 97 YCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGL 166 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgL 166 (531)
|++|++.+++..|++|+.. .....+.+.++.+++.+..++.+ |||||++||++|+.+|++++|||||+||
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~L 164 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGAL 164 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 9999998888899999832 12345778899999987666655 9999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 167 DARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 167 D~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+.++..+.+.|+++++ .|+|||++||+++ .+...||++++|++ |++++.|+.
T Consensus 165 D~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 165 DALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999865 4899999999987 46778999999986 999988764
No 81
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.2e-33 Score=281.84 Aligned_cols=190 Identities=17% Similarity=0.249 Sum_probs=156.3
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hhh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ETF 91 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~~ 91 (531)
.|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...
T Consensus 7 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 7 LVDMRGVSFTRG--NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred eEEEeCeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEccccChhhHHHH
Confidence 467888888774 346788888777766 99999999999998653 46899999976431 123
Q ss_pred cceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 92 ARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 92 ~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
++.++|++|+..+++.+|+.|+... ....+.+.++.+++.+..++.+ |||||++||++|+.+|
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p 162 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEP 162 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 5679999999988898999987211 1234566789999987666655 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|+|||||+|||+.+++.+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|+++
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 229 (269)
T PRK11831 163 DLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKIVAHGSAQ 229 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999999765 899999999976 57788999999986 9999998753
No 82
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.8e-33 Score=272.53 Aligned_cols=182 Identities=21% Similarity=0.255 Sum_probs=151.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc-----hhhhcc
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK-----QETFAR 93 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~-----~~~~~~ 93 (531)
++++|++++|+ ++.+|+++|+.+.|| |||||||+|+|+|..++ .+|++.++|.+.. ....++
T Consensus 1 l~~~~l~~~~~--~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~ 76 (213)
T cd03262 1 IEIKNLHKSFG--DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIIDGLKLTDDKKNINELRQ 76 (213)
T ss_pred CEEEEEEEEEC--CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCccchhHHHHHh
Confidence 36788888885 356888888887766 99999999999998653 4689999997642 123467
Q ss_pred eEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
.++|++|++.+++.+|+.|+.. ...+.+++.++.+++.+..++.+ |||||++||++|+.+|++
T Consensus 77 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 156 (213)
T cd03262 77 KVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKV 156 (213)
T ss_pred cceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCE
Confidence 8999999999888899998721 12235677888899987666654 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
++|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++
T Consensus 157 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~i 213 (213)
T cd03262 157 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GRI 213 (213)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CcC
Confidence 9999999999999999999999999877899999999987 57788999999986 763
No 83
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-33 Score=276.08 Aligned_cols=190 Identities=18% Similarity=0.229 Sum_probs=154.2
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---h-hhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---E-TFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~-~~~~ 93 (531)
.++++|++++|+ .+.+|+++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... . ..++
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~ 80 (237)
T PRK11614 5 MLSFDKVSAHYG--KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDITDWQTAKIMRE 80 (237)
T ss_pred EEEEEeEEEeeC--CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEecCCCCHHHHHHh
Confidence 477888888874 356888888877776 99999999999998653 46899999976432 1 2456
Q ss_pred eEEEEecCCCCCCCCcHHhHHH---------HHHHHHHHHHHhc-CCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH---------CLYMFIEEGMELV-ELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~---------~~~~~~~~~l~~l-~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
.++|++|+..+++..|+.++.. .....+++.++.+ ++.+..+..+ |||||++||++|+.+|++++
T Consensus 81 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ill 160 (237)
T PRK11614 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL 160 (237)
T ss_pred CEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 7999999998888899988721 1122345556666 4554444443 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+++
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 222 (237)
T PRK11614 161 LDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVLEDTGD 222 (237)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEeeCCHH
Confidence 99999999999999999999999878999999999986 57889999999996 9999999863
No 84
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-33 Score=282.23 Aligned_cols=192 Identities=20% Similarity=0.330 Sum_probs=158.4
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc-----hhhh
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK-----QETF 91 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~-----~~~~ 91 (531)
..|+++|++++|+ +++.+|+++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+.. ...+
T Consensus 4 ~~l~~~~l~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~ 80 (283)
T PRK13636 4 YILKVEELNYNYS-DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKPIDYSRKGLMKL 80 (283)
T ss_pred ceEEEEeEEEEeC-CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCEECCCCcchHHHH
Confidence 3578888888884 2345888888877776 99999999999998653 4799999998652 1245
Q ss_pred cceEEEEecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 92 ARILGYCEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 92 ~~~igyv~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
++.+||++|++. .+...|++|+.. .....++++++.+++.+..++.+ |||||++||+||+.+|
T Consensus 81 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p 160 (283)
T PRK13636 81 RESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP 160 (283)
T ss_pred HhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 678999999863 334679988721 12345788899999987776665 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...||++++|++ |++++.|+++
T Consensus 161 ~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i~~~g~~~ 227 (283)
T PRK13636 161 KVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRVILQGNPK 227 (283)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999999875 899999999987 46678999999986 9999999864
No 85
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2.9e-33 Score=273.19 Aligned_cols=189 Identities=20% Similarity=0.270 Sum_probs=157.3
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
++++|++++|+ ++.+|+++|+.+.+| |||||||+++|+|..++ .+|++.++|.+..... ++.++|+
T Consensus 1 l~l~~v~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~~~~~~~-~~~~~~~ 75 (223)
T TIGR03740 1 LETKNLSKRFG--KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP--TSGEIIFDGHPWTRKD-LHKIGSL 75 (223)
T ss_pred CEEEeEEEEEC--CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEeccccc-cccEEEE
Confidence 35778888774 346788888777766 99999999999998653 4789999997654322 2569999
Q ss_pred ecCCCCCCCCcHHhHHHH-------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 042733 99 EQNDIHSPHDTLYDFTHC-------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGL 166 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~~-------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgL 166 (531)
+|++.+++..|++|+... ....+.+.++.+++.+..++.+ |||||++||++++.+|++++|||||+||
T Consensus 76 ~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~L 155 (223)
T TIGR03740 76 IESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGL 155 (223)
T ss_pred cCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCC
Confidence 999988888999987321 1235678889999987766654 9999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 167 DARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 167 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
|+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|++.+
T Consensus 156 D~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 210 (223)
T TIGR03740 156 DPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKINK 210 (223)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChhh
Confidence 999999999999999877999999999987 57788999999986 99999998753
No 86
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-33 Score=282.98 Aligned_cols=190 Identities=19% Similarity=0.286 Sum_probs=156.8
Q ss_pred EEEEEeEEEEEeCCC---ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------
Q 042733 27 YISLNEIVYSVDMPQ---IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ 88 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~---~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------ 88 (531)
.++++||+++|+.+. +.+|+|+|+.+.+| |||||||+|+|+|..++ ..|+|.++|.+...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~i~~~~~~~~ 79 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTVDDITITHKTKDKY 79 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECccccccch
Confidence 378999999996322 36999999888887 99999999999998653 46899999976521
Q ss_pred -hhhcceEEEEecCC--CCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHH
Q 042733 89 -ETFARILGYCEQND--IHSPHDTLYDFT-----------HCLYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAV 148 (531)
Q Consensus 89 -~~~~~~igyv~Q~~--~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~ 148 (531)
...++.+||++|++ .+++ .|+.|+. .....++++.++.+|+. +..++.+ |||||++||+
T Consensus 80 ~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lar 158 (286)
T PRK13646 80 IRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVS 158 (286)
T ss_pred HHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 23567899999985 3443 5888872 12234577889999996 5555544 9999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 159 aL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~-G~i~~~g~~ 230 (286)
T PRK13646 159 ILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE-GSIVSQTSP 230 (286)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999986 4999999999987 57788999999986 999999985
No 87
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.2e-33 Score=273.72 Aligned_cols=188 Identities=21% Similarity=0.280 Sum_probs=151.1
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh-hcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-FARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-~~~~ 94 (531)
|+++|++++|+ .+++|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... .. .++.
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~ 76 (222)
T cd03224 1 LEVENLNAGYG--KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDITGLPPHERARAG 76 (222)
T ss_pred CEEeeEEeecC--CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCCCCHHHHHhcC
Confidence 35677777774 345777777777666 99999999999998653 46899999976432 11 3457
Q ss_pred EEEEecCCCCCCCCcHHhHHH---------HHHHHHHHHHHhc-CCchhhhccH-----HHHHHHHHHHHHhhCCCeEEE
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH---------CLYMFIEEGMELV-ELNPFRQALF-----EQRKRLTVAVEFVANPSIISR 159 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~---------~~~~~~~~~l~~l-~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllL 159 (531)
++|++|++.+++.+|++|+.. .....+++.++.+ ++.+..++.+ |||||++|||+|+.+|++|+|
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 156 (222)
T cd03224 77 IGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLL 156 (222)
T ss_pred eEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999998721 1123355667776 4655555544 999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 160 DEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 160 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (222)
T cd03224 157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEGTA 216 (222)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeCCH
Confidence 9999999999999999999999877899999999986 57788999999986 999988864
No 88
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-33 Score=276.05 Aligned_cols=190 Identities=23% Similarity=0.299 Sum_probs=156.5
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~ 93 (531)
.++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ...++
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~ 78 (241)
T PRK10895 3 TLTAKNLAKAYK--GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR--DAGNIIIDDEDISLLPLHARARR 78 (241)
T ss_pred eEEEeCcEEEeC--CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHHHHh
Confidence 467778877774 346777777777766 99999999999998653 46899999976432 12356
Q ss_pred eEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
.++|++|++.+++.+|+.|+.. .....+++.++.+++.+..+..+ |||||++||++|+.+|++
T Consensus 79 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (241)
T PRK10895 79 GIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKF 158 (241)
T ss_pred CeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 7999999998888899988721 12245677889999877655544 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+|||||+|||+.++..+.+.+++++++|+|||++||+++ ++.+.||++++|++ |+++..|+++
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 222 (241)
T PRK10895 159 ILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHGTPT 222 (241)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeCCHH
Confidence 9999999999999999999999999877999999999986 57788999999986 9999988753
No 89
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-33 Score=286.15 Aligned_cols=193 Identities=19% Similarity=0.253 Sum_probs=159.2
Q ss_pred ceEEEEEeEEEEEeCC---CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----
Q 042733 25 PHYISLNEIVYSVDMP---QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---- 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~---~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---- 88 (531)
...|+++|++++|+.. .+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+...
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p--~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS--KYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCEEccccccc
Confidence 3568999999999632 136999999999988 99999999999998653 46899999865321
Q ss_pred ---------------hhhcceEEEEecCC--CCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCc-hhhhccH-
Q 042733 89 ---------------ETFARILGYCEQND--IHSPHDTLYDFT-----------HCLYMFIEEGMELVELN-PFRQALF- 138 (531)
Q Consensus 89 ---------------~~~~~~igyv~Q~~--~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~-~~~~~~~- 138 (531)
...++.+||++|++ .+++ .|++|+. .....++++.++.+++. +..++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 175 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPF 175 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 23567899999986 3444 5998862 11234677889999996 4555543
Q ss_pred ----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 139 ----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 139 ----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~adri~vl~~-G~ 253 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDK-GK 253 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999877999999999986 46788999999996 99
Q ss_pred eeecCCCC
Q 042733 215 EISVGPLG 222 (531)
Q Consensus 215 ~v~~G~~~ 222 (531)
++..|+++
T Consensus 254 i~~~g~~~ 261 (320)
T PRK13631 254 ILKTGTPY 261 (320)
T ss_pred EEEeCCHH
Confidence 99999863
No 90
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=4.5e-33 Score=271.71 Aligned_cols=184 Identities=22% Similarity=0.284 Sum_probs=151.9
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hhhc
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ETFA 92 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~~~ 92 (531)
++++|+++.|+ +++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..++
T Consensus 2 l~~~~l~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~ 78 (222)
T PRK10908 2 IRFEHVSKAYL-GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP--SAGKIWFSGHDITRLKNREVPFLR 78 (222)
T ss_pred EEEEeeEEEec-CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCChhHHHHHH
Confidence 57888888884 2356888888887777 99999999999998653 47999999976431 1245
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
+.++|++|++.+++..|+.|+.. .....+++.++.+++.+..++.+ |||||++||+||+.+|++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (222)
T PRK10908 79 RQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAV 158 (222)
T ss_pred hheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 78999999998888899988721 11234667889999877666554 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceee
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI 216 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v 216 (531)
|+|||||+|||+.++..+.+.|++++++|.|+|++||+++ ++...||++++|++ |+++
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 159 LLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 9999999999999999999999999877899999999987 46778999999986 8864
No 91
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-33 Score=281.64 Aligned_cols=192 Identities=20% Similarity=0.266 Sum_probs=156.8
Q ss_pred EEEEEeEEEEEeCCC---ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------
Q 042733 27 YISLNEIVYSVDMPQ---IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ 88 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~---~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------ 88 (531)
.++++|+++.|+.+. +.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~ 79 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYHITPETGNKN 79 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECccccccch
Confidence 467889998885221 45888888888777 99999999999998653 47999999976421
Q ss_pred -hhhcceEEEEecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHHH
Q 042733 89 -ETFARILGYCEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAVE 149 (531)
Q Consensus 89 -~~~~~~igyv~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~a 149 (531)
...++.+||++|++. .+..+|+.|+.. ....++++.++.+++. +..++.+ |||||++||++
T Consensus 80 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~lara 159 (287)
T PRK13641 80 LKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGV 159 (287)
T ss_pred HHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHH
Confidence 234567999999863 333579988721 1234577889999996 5655554 99999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |+++..|+++
T Consensus 160 l~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 230 (287)
T PRK13641 160 MAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-GKLIKHASPK 230 (287)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999999999877999999999987 57789999999986 9999999753
No 92
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-33 Score=276.31 Aligned_cols=187 Identities=24% Similarity=0.330 Sum_probs=155.1
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
++++|+++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... .++.++|+
T Consensus 2 l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~--~~~~~~~v 75 (255)
T PRK11248 2 LQISHLYADYG--GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITLDGKPVEG--PGAERGVV 75 (255)
T ss_pred EEEEEEEEEeC--CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCC--CCCcEEEE
Confidence 57888888885 356888888877776 99999999999998653 46899999976532 23458999
Q ss_pred ecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 99 EQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEP 162 (531)
+|++.+++..|+.|+.. .....+.+.++.+++.+..++.+ |||||++||++|+.+|++|+||||
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEP 155 (255)
T PRK11248 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEP 155 (255)
T ss_pred eCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99998888899988721 12345778899999987666554 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEcc-CceeeecCCC
Q 042733 163 ISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQ-VGQEISVGPL 221 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~-~G~~v~~G~~ 221 (531)
|+|||+.++..+.+.|+++++ +|+|||++||+++ ++...||++++|++ +|+++..++.
T Consensus 156 t~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 156 FGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999865 5899999999987 57788999999973 4899887764
No 93
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-33 Score=281.39 Aligned_cols=191 Identities=23% Similarity=0.283 Sum_probs=159.0
Q ss_pred EEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 27 YISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
.++++|++++|+.. .+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~ 81 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDLLTEENVWDIRH 81 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECCcCcHHHHHh
Confidence 47889999988532 245889999888877 99999999999998653 46899999986532 23567
Q ss_pred eEEEEecCC-CCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 94 ILGYCEQND-IHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 94 ~igyv~Q~~-~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
.+||++|++ ..++..||+|+.. ...++++++++.+++.+..++.+ |||||++||+||+.+|++
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 161 (279)
T PRK13650 82 KIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKI 161 (279)
T ss_pred hceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 899999997 3677789998721 12345788899999987766665 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++ ..||++++|++ |+++..|+++
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~~g~~~ 225 (279)
T PRK13650 162 IILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVESTSTPR 225 (279)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999875 999999999987 35 57999999986 9999999863
No 94
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=5.6e-33 Score=271.82 Aligned_cols=188 Identities=19% Similarity=0.236 Sum_probs=149.9
Q ss_pred EEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hh
Q 042733 28 ISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ET 90 (531)
Q Consensus 28 l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~ 90 (531)
++++|++++|+... ..+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~ 79 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP--TSGSIIFDGKDLLKLSRRLRKI 79 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEccccchhhHHH
Confidence 57888888885321 26888888887776 99999999999998653 46899999976532 23
Q ss_pred hcceEEEEecCC--CCCCCCcHHhHHH------------HHHHH-HHHHHHhcCCc-hhhhccH-----HHHHHHHHHHH
Q 042733 91 FARILGYCEQND--IHSPHDTLYDFTH------------CLYMF-IEEGMELVELN-PFRQALF-----EQRKRLTVAVE 149 (531)
Q Consensus 91 ~~~~igyv~Q~~--~~~~~ltv~e~~~------------~~~~~-~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~a 149 (531)
+++.++|++|++ .+++.+|++++.. ..... .++.++.+++. +..++.+ |||||++|||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 159 (228)
T cd03257 80 RRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA 159 (228)
T ss_pred hhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHH
Confidence 466899999998 4667899988721 00111 24677888884 4555443 99999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 228 (228)
T cd03257 160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-GKIVEEG 228 (228)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999876 899999999987 56678999999986 8987654
No 95
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.3e-33 Score=270.43 Aligned_cols=181 Identities=24% Similarity=0.356 Sum_probs=143.4
Q ss_pred EEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceEEE
Q 042733 30 LNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARILGY 97 (531)
Q Consensus 30 ~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~igy 97 (531)
++|++++|+...+.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++.++|
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccCCHHHHHhhceE
Confidence 45666666421145667766666655 99999999999997653 46899999976432 235677999
Q ss_pred EecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 98 CEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 98 v~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
++|++. .++..|+.|+.. .....+++.++.+++.+..++.+ |||||++|||||+.+|++++||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 159 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLD 159 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999974 366789988721 12235677889999976655544 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 161 EPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
|||+|||+.++..+.+.|++++++|+|||++||+++ ++...||++++|++ |+
T Consensus 160 EPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~ 211 (211)
T cd03225 160 EPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLED-GK 211 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CC
Confidence 999999999999999999999877999999999986 56778999999986 64
No 96
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-33 Score=276.57 Aligned_cols=190 Identities=22% Similarity=0.304 Sum_probs=158.6
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.++++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ...++.
T Consensus 2 ~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~ 77 (255)
T PRK11231 2 TLRTENLTVGYG--TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQLARR 77 (255)
T ss_pred EEEEEeEEEEEC--CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCcEEEECCEEhHHCCHHHHhhh
Confidence 467888888885 356888888877777 99999999999997653 46899999976432 234567
Q ss_pred EEEEecCCCCCCCCcHHhHHHH---------------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 95 LGYCEQNDIHSPHDTLYDFTHC---------------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~~---------------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
++|++|+..+++.+|+.|+... ....+++.++.+++.+..++.+ |||||++||+|++.+|
T Consensus 78 i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 157 (255)
T PRK11231 78 LALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDT 157 (255)
T ss_pred eEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999888888899887221 1235677888899987666655 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+.+
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 223 (255)
T PRK11231 158 PVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQGTPE 223 (255)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEcCHH
Confidence 999999999999999999999999999877999999999987 57789999999986 9999988764
No 97
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=7.6e-33 Score=274.49 Aligned_cols=188 Identities=21% Similarity=0.250 Sum_probs=153.7
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc---eEEEEEEEcCcccch-----hh
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG---YITRNITVSGYPEKQ-----ET 90 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g---~~~G~i~~~g~~~~~-----~~ 90 (531)
++++|++++|+ +..+++|+|+.+.+| |||||||+|+|+|..++. ..+|+|.++|.+... ..
T Consensus 2 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYG--EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEEC--CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 57888888885 346888888877777 999999999999976431 127999999986532 23
Q ss_pred hcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCc----hhhhccH-----HHHHHHHHHHH
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELN----PFRQALF-----EQRKRLTVAVE 149 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~----~~~~~~~-----GerqRv~iA~a 149 (531)
.++.++|++|++.+++ .|+.|+.. .....++++++.+++. +..++.+ |||||++|||+
T Consensus 80 ~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 158 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARA 158 (247)
T ss_pred HHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHH
Confidence 4678999999988888 99998721 1123466788889987 5444443 99999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (247)
T TIGR00972 159 LAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD-GELVEYGPT 227 (247)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999999999977 489999999987 57788999999996 999998875
No 98
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=8.1e-33 Score=275.11 Aligned_cols=188 Identities=20% Similarity=0.244 Sum_probs=157.4
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----------
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---------- 88 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---------- 88 (531)
++++||++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|++.++|.+...
T Consensus 1 i~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~ 76 (252)
T TIGR03005 1 VRFSDVTKRFG--ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLYHMPGRNGPLVP 76 (252)
T ss_pred CEEEEEEEEeC--CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccccc
Confidence 36889998885 356889999888776 99999999999997653 46899999875421
Q ss_pred ------hhhcceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCchhhhccH-----HHHHHHH
Q 042733 89 ------ETFARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELNPFRQALF-----EQRKRLT 145 (531)
Q Consensus 89 ------~~~~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~ 145 (531)
...++.++|++|++.+++..|+.|+... ....+++.++.+++.+..++.+ |||||++
T Consensus 77 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 156 (252)
T TIGR03005 77 ADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVA 156 (252)
T ss_pred cchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHH
Confidence 1346779999999999999999887321 1234677889999987666554 9999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|+|++||+++ ++...+|++++|++ |+++..|+.
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK-GRIVEQGKP 231 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999875 899999999987 56788999999986 999988875
No 99
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=7e-33 Score=270.05 Aligned_cols=184 Identities=20% Similarity=0.245 Sum_probs=149.3
Q ss_pred EEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---h---h
Q 042733 28 ISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---E---T 90 (531)
Q Consensus 28 l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~---~ 90 (531)
++++|++++|+.+. +++|+++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... . .
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhhhcCHhHHHH
Confidence 57788888885321 35888888877776 99999999999998653 46899999976432 1 1
Q ss_pred hc-ceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhC
Q 042733 91 FA-RILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVAN 153 (531)
Q Consensus 91 ~~-~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~ 153 (531)
++ +.++|++|++.+++..|++|+.. .....+.+.++.+++.+..++.+ |||||++||++|+.+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 159 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQ 159 (221)
T ss_pred HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence 22 57999999998888899998721 11235677889999987666654 999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceee
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI 216 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v 216 (531)
|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ +.+|++++|++ |+++
T Consensus 160 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i~ 220 (221)
T TIGR02211 160 PSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQLF 220 (221)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEec
Confidence 9999999999999999999999999999864 899999999987 34 45799999986 8875
No 100
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-33 Score=276.46 Aligned_cols=190 Identities=19% Similarity=0.201 Sum_probs=156.1
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh-hcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-FAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-~~~ 93 (531)
.++++|+++.|+ ++++|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... .. .+.
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~ 80 (255)
T PRK11300 5 LLSVSGLMMRFG--GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP--TGGTILLRGQHIEGLPGHQIARM 80 (255)
T ss_pred eEEEeeEEEEEC--CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CcceEEECCEECCCCCHHHHHhc
Confidence 467888888774 346788888777766 99999999999998653 47999999976532 12 234
Q ss_pred eEEEEecCCCCCCCCcHHhHHHH--------------------------HHHHHHHHHHhcCCchhhhccH-----HHHH
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTHC--------------------------LYMFIEEGMELVELNPFRQALF-----EQRK 142 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~~--------------------------~~~~~~~~l~~l~l~~~~~~~~-----Gerq 142 (531)
.++|++|++.+++.+|+.|+... ....+++.++.+|+.+..++.+ ||||
T Consensus 81 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred CeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHH
Confidence 58999999999999999986210 1134566788899877666655 9999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 143 RLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 143 Rv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 238 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVNQ-GTPLANGTP 238 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEecCCH
Confidence 999999999999999999999999999999999999999875 899999999987 57788999999986 999998875
Q ss_pred C
Q 042733 222 G 222 (531)
Q Consensus 222 ~ 222 (531)
+
T Consensus 239 ~ 239 (255)
T PRK11300 239 E 239 (255)
T ss_pred H
Confidence 3
No 101
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-33 Score=278.91 Aligned_cols=191 Identities=24% Similarity=0.275 Sum_probs=155.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.++++||++.|+...+.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECCcCcHHHHhhh
Confidence 36777777777532345777777776666 99999999999998653 47999999986532 234567
Q ss_pred EEEEecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 95 LGYCEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 95 igyv~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
+||++|++. .++..|+.|+.. ....+++++++.+|+.+..++.+ |||||++||++|+.+|++|
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 162 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDII 162 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999973 667789998721 12345788889999988777665 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||+|||+.++..+++.|++++++ |+|||++||+++. +. .||++++|++ |++++.|+++
T Consensus 163 lLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~-G~i~~~g~~~ 225 (279)
T PRK13635 163 ILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNK-GEILEEGTPE 225 (279)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999876 8999999999873 54 5999999986 9999999753
No 102
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-33 Score=278.94 Aligned_cols=189 Identities=20% Similarity=0.276 Sum_probs=156.8
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~~ 94 (531)
++++|++++|+. ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.
T Consensus 2 l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~ 78 (274)
T PRK13644 2 IRLENVSYSYPD-GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP--QKGKVLVSGIDTGDFSKLQGIRKL 78 (274)
T ss_pred EEEEEEEEEcCC-CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEECCccccHHHHHhh
Confidence 578888888842 345888888888777 99999999999998653 46899999986532 234567
Q ss_pred EEEEecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 95 LGYCEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 95 igyv~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
+||++|++. .++..|+.|+.. .....+++.++.+++.+..++.+ |||||++||+||+.+|++|
T Consensus 79 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 158 (274)
T PRK13644 79 VGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECL 158 (274)
T ss_pred eEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999975 356689988721 12345777889999987777665 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||+|||+.++..+++.|++++++|.|||++||+++ ++ ..||++++|++ |+++..|+++
T Consensus 159 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~g~~~ 220 (274)
T PRK13644 159 IFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLEGEPE 220 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999877999999999987 45 56999999986 9999999853
No 103
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.3e-33 Score=289.98 Aligned_cols=184 Identities=20% Similarity=0.235 Sum_probs=158.1
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhh----cceEEEEecC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETF----ARILGYCEQN 101 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~----~~~igyv~Q~ 101 (531)
.++|+++++.. ..+.+.+||+|||||||||+|+|..++ .+|+|.++|.+... ... ++.+||++|+
T Consensus 8 ~l~~vs~~i~~------Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 8 GVNDADLAIAK------GEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred eEEeeEEEEcC------CCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 57888888763 356788888899999999999998763 57999999987542 222 5789999999
Q ss_pred CCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 042733 102 DIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISG 165 (531)
Q Consensus 102 ~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsg 165 (531)
+.++|++||+|+. ....+++.++++.+||.+..++.+ ||||||+|||||+.+|++|+|||||+|
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~sa 159 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSA 159 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999999999972 123456788899999988777766 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 166 LDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 166 LD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||+.++..+.+.++++.++ |+|||++||+++ ++...||++++|++ |+++..|+++
T Consensus 160 LD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~~ 215 (363)
T TIGR01186 160 LDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTPD 215 (363)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCHH
Confidence 9999999999999999764 899999999987 57788999999986 9999999864
No 104
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-34 Score=266.27 Aligned_cols=172 Identities=23% Similarity=0.306 Sum_probs=150.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcceEEEEecCCCCCCCCcHHhHH---------
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFARILGYCEQNDIHSPHDTLYDFT--------- 114 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~~igyv~Q~~~~~~~ltv~e~~--------- 114 (531)
+-|.+|||||||||.+.++.|...+ .+|.|.++|.+++. ...|.-+||+||+...|..+||+|+.
T Consensus 32 iVGLLGPNGAGKTT~Fymi~Glv~~--d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~ 109 (243)
T COG1137 32 IVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK 109 (243)
T ss_pred EEEEECCCCCCceeEEEEEEEEEec--CCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc
Confidence 4466677799999999999997653 46899999987653 23355799999999999999999981
Q ss_pred ----HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 042733 115 ----HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMG 185 (531)
Q Consensus 115 ----~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g 185 (531)
.+.+.+.+++++.+++.++++.+. |||||+.|||||+.+|+.++||||++|.||.+..++.++++.|+++|
T Consensus 110 d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rg 189 (243)
T COG1137 110 DLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRG 189 (243)
T ss_pred chhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCC
Confidence 133445778999999999998876 99999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 186 RTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 186 ~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
..|++|-|+.. |....|||..++.+ |+++++|++++
T Consensus 190 iGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~e 225 (243)
T COG1137 190 IGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPEE 225 (243)
T ss_pred ceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHHH
Confidence 99999999987 67889999999997 99999999854
No 105
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=9.3e-33 Score=276.25 Aligned_cols=192 Identities=22% Similarity=0.286 Sum_probs=158.8
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc-eEEEEEEEcCcccch--------
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG-YITRNITVSGYPEKQ-------- 88 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g-~~~G~i~~~g~~~~~-------- 88 (531)
.|+++||+++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++. ..+|+|.++|.+...
T Consensus 4 ~l~~~nl~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFN--QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeC--CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 578888888884 356888888877776 999999999999976432 135899999976421
Q ss_pred hhhcceEEEEecCCCCCCCCcHHhHHH-------------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHH
Q 042733 89 ETFARILGYCEQNDIHSPHDTLYDFTH-------------------CLYMFIEEGMELVELNPFRQALF-----EQRKRL 144 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~~~~~ltv~e~~~-------------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv 144 (531)
...++.++|++|++.+++.+|+.|+.. ....++++.++.+++.+..++.+ ||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 161 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRV 161 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHH
Confidence 234567999999999899899988732 11235778899999987666654 999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||+.+|++|+|||||+|||+.+++.+.+.|++++++ |+|||++||+++ .+...||++++|++ |++++.|+++
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 162 AIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQ-GHVFYDGSSQ 238 (262)
T ss_pred HHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999999999999999864 899999999987 46788999999986 9999999864
No 106
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-32 Score=277.98 Aligned_cols=191 Identities=20% Similarity=0.328 Sum_probs=155.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.++++|++++|+. .+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.
T Consensus 3 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~ 79 (277)
T PRK13652 3 LIETRDLCYSYSG-SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP--TSGSVLIRGEPITKENIREVRKF 79 (277)
T ss_pred eEEEEEEEEEeCC-CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCcCCHHHHHhh
Confidence 3677888888842 235788888777776 99999999999998653 47999999976432 345667
Q ss_pred EEEEecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 95 LGYCEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 95 igyv~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
+||++|++. .+...|+.++.. .....+++.++.+++.+..++.+ |||||++||+||+.+|++|
T Consensus 80 i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~ll 159 (277)
T PRK13652 80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVL 159 (277)
T ss_pred eEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999963 344679988621 12235678899999987666655 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.||++++|++ |++++.|+++
T Consensus 160 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~g~~~ 223 (277)
T PRK13652 160 VLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAYGTVE 223 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEECCHH
Confidence 999999999999999999999999875 899999999987 57789999999996 9999999863
No 107
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1e-32 Score=284.12 Aligned_cols=193 Identities=16% Similarity=0.237 Sum_probs=159.3
Q ss_pred eEEEEEeEEEEEeCC-----------CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 042733 26 HYISLNEIVYSVDMP-----------QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYP 85 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~-----------~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~ 85 (531)
..|+++||+++|+.+ ...+++|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKD 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEE
Confidence 458899999888531 235889999888877 99999999999998653 46999999986
Q ss_pred cch------hhhcceEEEEecCC--CCCCCCcHHhHHH-------------HHHHHHHHHHHhcCCc-hhhhccH-----
Q 042733 86 EKQ------ETFARILGYCEQND--IHSPHDTLYDFTH-------------CLYMFIEEGMELVELN-PFRQALF----- 138 (531)
Q Consensus 86 ~~~------~~~~~~igyv~Q~~--~~~~~ltv~e~~~-------------~~~~~~~~~l~~l~l~-~~~~~~~----- 138 (531)
... ..+++.++|++|++ .++|.+|+.++.. +....+.+.++.+++. +..++.+
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 532 12456899999997 5788899988721 1234567789999994 4555544
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeee
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS 217 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~ 217 (531)
||||||+||+||+.+|++|++||||+|||+.++.+++++|++++++ |.|+|++|||++ .+.+.||++++|.+ |+++.
T Consensus 165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~-G~ive 242 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL-GHAVE 242 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999987 46778999999996 99999
Q ss_pred cCCCC
Q 042733 218 VGPLG 222 (531)
Q Consensus 218 ~G~~~ 222 (531)
.|+++
T Consensus 243 ~g~~~ 247 (331)
T PRK15079 243 LGTYD 247 (331)
T ss_pred EcCHH
Confidence 99864
No 108
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.4e-32 Score=270.72 Aligned_cols=187 Identities=22% Similarity=0.293 Sum_probs=153.5
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILG 96 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ig 96 (531)
++++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.++
T Consensus 2 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i~~~~~~~~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYG--ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDLRRAPRAALARLG 77 (236)
T ss_pred EEEEeeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcccCChhhhhhEE
Confidence 56788888874 356888888777776 99999999999998653 46899999976432 12335799
Q ss_pred EEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
|++|++.+++..|++|+.. .....+++.++.+|+.+..++.+ |||||++||++|+.+|++++||
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 157 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLD 157 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999988888999998721 12334677888999987666654 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|||+|||+.++..+.+.|+++++ +|.|+|++||+++. +. .||++++|++ |+++..|++
T Consensus 158 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~-G~i~~~~~~ 216 (236)
T TIGR03864 158 EPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHR-GRVLADGAA 216 (236)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeC-CeEEEeCCH
Confidence 99999999999999999999985 58999999999873 44 5999999986 999988874
No 109
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=9.5e-33 Score=272.86 Aligned_cols=187 Identities=24% Similarity=0.310 Sum_probs=155.4
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---h-hhcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---E-TFARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~-~~~~~ 94 (531)
|+++|+++.|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... . ..++.
T Consensus 3 i~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 3 LYLEGLSVSFD--GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP--DEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred EEEEeeEEEcC--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCeecCCCCHHHHHhcC
Confidence 67888888884 346888888777776 99999999999997653 46899999976432 1 13456
Q ss_pred EEEEecCCCCCCCCcHHhHHHH-------------------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHH
Q 042733 95 LGYCEQNDIHSPHDTLYDFTHC-------------------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEF 150 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~~-------------------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL 150 (531)
++|++|++.+++.+|++|+... ....+++.++.+++.+..++.+ ||||||+||+||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999999999999986211 2345678889999987666655 999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~~~~~~~~ 226 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GSVLAEGSL 226 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEeeCCH
Confidence 999999999999999999999999999999976 789999999987 57788999999986 999988875
No 110
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-33 Score=276.67 Aligned_cols=191 Identities=17% Similarity=0.234 Sum_probs=160.9
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..|+++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++
T Consensus 6 ~~l~i~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 6 ARLRGEQLTLGYG--KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred cEEEEEEEEEEEC--CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEEhhhCCHHHHhh
Confidence 4678999999985 356899999888877 99999999999998653 46899999976432 23456
Q ss_pred eEEEEecCCCCCCCCcHHhHHH---------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH---------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVAN 153 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~---------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~ 153 (531)
.++|++|++.+++..|++++.. .....+++.++.+++.+..++.+ |||||++||||++.+
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~ 161 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQE 161 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcC
Confidence 7999999998888899988731 12235678889999987666655 999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|++++|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.||++++|++ |+++..|+++
T Consensus 162 p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 229 (265)
T PRK10253 162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVAQGAPK 229 (265)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999999874 899999999987 57889999999986 9999998864
No 111
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=274.37 Aligned_cols=191 Identities=20% Similarity=0.222 Sum_probs=154.0
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccch----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEKQ---- 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~~---- 88 (531)
...++++|+++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+. ...+|+|.++|.+...
T Consensus 10 ~~~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 10 QPQIKVENLNLWYG--EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred ceeEEEeeeEEEeC--CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 34678888888885 356888888888777 99999999999997542 1257999999976421
Q ss_pred -hhhcceEEEEecCCCCCCCCcHHhHHHH-----------HHHHHHHHHHhcCCc----hhhhccH-----HHHHHHHHH
Q 042733 89 -ETFARILGYCEQNDIHSPHDTLYDFTHC-----------LYMFIEEGMELVELN----PFRQALF-----EQRKRLTVA 147 (531)
Q Consensus 89 -~~~~~~igyv~Q~~~~~~~ltv~e~~~~-----------~~~~~~~~l~~l~l~----~~~~~~~-----GerqRv~iA 147 (531)
..+++.++|++|++.+++ .|++|+... ....++++++.+++. +..++.+ ||||||+||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 166 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIA 166 (258)
T ss_pred HHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHH
Confidence 234667999999988877 899987221 123466788888873 3334433 999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 167 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 237 (258)
T PRK14268 167 RTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLM-GELIEFGQT 237 (258)
T ss_pred HHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999865 799999999987 46788999999986 999999875
No 112
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-33 Score=279.85 Aligned_cols=186 Identities=20% Similarity=0.240 Sum_probs=148.9
Q ss_pred EEeEEEEEeCCCccccccEEEEEc---------CCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh----hcc
Q 042733 30 LNEIVYSVDMPQIGDLNSLSGAFR---------PGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET----FAR 93 (531)
Q Consensus 30 ~~~ls~~~~~~~~~iL~~vs~~i~---------~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~----~~~ 93 (531)
++|+++.|+ .+.+|+|+|+.+. |||||||||+|+|+|..++ .+|+|.++|.+... .. .++
T Consensus 27 ~~~~~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 27 KEEILKKTG--QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhcC--CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcC
Confidence 445555553 2345555555555 5599999999999998653 46899999976432 11 235
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
.++|++|++.+++.+|+.|+.. .....+++.++.+++.+..++.+ |||||++||+||+.+|++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~il 182 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDIL 182 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 7999999999998999998721 11245677899999987766654 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 183 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 183 LMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999764 899999999987 57788999999986 999998875
No 113
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-32 Score=275.14 Aligned_cols=190 Identities=23% Similarity=0.312 Sum_probs=157.6
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.++++|+++.|+ ++.+|+|+|+.+.+| |||||||+++|+|..++ .+|+|.++|.+... ...++.
T Consensus 2 ~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~ 77 (258)
T PRK13548 2 MLEARNLSVRLG--GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP--DSGEVRLNGRPLADWSPAELARR 77 (258)
T ss_pred eEEEEeEEEEeC--CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEcccCCHHHhhhh
Confidence 367888888885 356888888877776 99999999999998653 46899999976432 234567
Q ss_pred EEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHh------h
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFV------A 152 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~------~ 152 (531)
++|++|++.+++.+|++|+.. .....+++.++.+++.+..++.+ ||||||+||++|+ .
T Consensus 78 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~ 157 (258)
T PRK13548 78 RAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDG 157 (258)
T ss_pred eEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCC
Confidence 999999988888899998721 12345678889999987666655 9999999999999 5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTV-DMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||+++ ++.+.||++++|++ |+++..|+++
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 226 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-GRLVADGTPA 226 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-CEEEeeCCHH
Confidence 999999999999999999999999999998 56899999999987 46778999999986 9999888753
No 114
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-32 Score=276.68 Aligned_cols=192 Identities=20% Similarity=0.269 Sum_probs=159.4
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..++++|++++|+.+++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~ 83 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGITISKENLKEIRK 83 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEecCcCCHHHHhc
Confidence 468999999999533457999999888877 99999999999998653 46899999987532 24567
Q ss_pred eEEEEecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 94 ILGYCEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 94 ~igyv~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
.++|++|++. .++..|++|+.. .....++++++.+++.+..++.+ |||||++|||||+.+|++
T Consensus 84 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 163 (271)
T PRK13632 84 KIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEI 163 (271)
T ss_pred ceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 8999999974 567789998721 12234677889999987766654 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+|||||+|||+.++..+++.|++++++ ++|||++||+++. + ..||++++|++ |+++..|+++
T Consensus 164 llLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~~g~~~ 227 (271)
T PRK13632 164 IIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSE-GKLIAQGKPK 227 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEEC-CEEEEecCHH
Confidence 9999999999999999999999999876 5999999999873 4 47999999986 9999888753
No 115
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=4.7e-33 Score=269.82 Aligned_cols=181 Identities=24% Similarity=0.382 Sum_probs=143.3
Q ss_pred EEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEec
Q 042733 30 LNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQ 100 (531)
Q Consensus 30 ~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q 100 (531)
++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. ..++.++|++|
T Consensus 2 ~~~l~~~~~--~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~--~~~~~i~~v~q 75 (213)
T cd03235 2 VEDLTVSYG--GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE--KERKRIGYVPQ 75 (213)
T ss_pred cccceeEEC--CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--HHHhheEEecc
Confidence 345666553 234566666555555 99999999999997653 4689999997653 34667999999
Q ss_pred CCCCC--CCCcHHhHHH---------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 101 NDIHS--PHDTLYDFTH---------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 101 ~~~~~--~~ltv~e~~~---------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
++.+. +..|++|+.. ...+.+++.++.+++.+..++.+ |||||++||+||+.+|++|+
T Consensus 76 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 155 (213)
T cd03235 76 RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLL 155 (213)
T ss_pred ccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 97653 3479988721 12345677889999987666554 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ | +++.|
T Consensus 156 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 156 LDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 99999999999999999999999878999999999987 56788999999975 5 66654
No 116
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.2e-32 Score=275.96 Aligned_cols=192 Identities=19% Similarity=0.262 Sum_probs=156.9
Q ss_pred EEEEEeEEEEEeCC-------CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--
Q 042733 27 YISLNEIVYSVDMP-------QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-- 88 (531)
Q Consensus 27 ~l~~~~ls~~~~~~-------~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-- 88 (531)
.|+++||++.|+.. ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~ 79 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDLYQLD 79 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEccccC
Confidence 36888999988531 356899999888877 99999999999998653 46899999976432
Q ss_pred -h---hhcceEEEEecCC--CCCCCCcHHhHHH------------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHH
Q 042733 89 -E---TFARILGYCEQND--IHSPHDTLYDFTH------------CLYMFIEEGMELVELN-PFRQALF-----EQRKRL 144 (531)
Q Consensus 89 -~---~~~~~igyv~Q~~--~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv 144 (531)
. ..++.++|++|++ .+.+..|+.|+.. .....+++.++.+++. ...++.+ |||||+
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv 159 (265)
T TIGR02769 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRI 159 (265)
T ss_pred HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHH
Confidence 1 2456799999986 4667789988621 1234567788999995 5555544 999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.||++++|++ |+++..|+++
T Consensus 160 ~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 236 (265)
T TIGR02769 160 NIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-GQIVEECDVA 236 (265)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-CEEEEECCHH
Confidence 9999999999999999999999999999999999999875 899999999987 46678999999986 9999998863
No 117
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-32 Score=275.89 Aligned_cols=192 Identities=19% Similarity=0.228 Sum_probs=157.6
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..++++|++++|+...+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~ 83 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAITDDNFEKLRK 83 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCcCCHHHHHh
Confidence 458899999998633345899999888877 99999999999998653 47999999976532 34567
Q ss_pred eEEEEecCCC-CCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 94 ILGYCEQNDI-HSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 94 ~igyv~Q~~~-~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
.++|++|++. .++..|+.++. ......++++++.+++.+..++.+ |||||++|||||+.+|++
T Consensus 84 ~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 163 (269)
T PRK13648 84 HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSV 163 (269)
T ss_pred heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 8999999974 66777887651 112345677889999987666654 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.. +|++++|++ |+++..|+++
T Consensus 164 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~-G~i~~~g~~~ 227 (269)
T PRK13648 164 IILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNK-GTVYKEGTPT 227 (269)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEEC-CEEEEecCHH
Confidence 9999999999999999999999999865 899999999987 4554 999999986 9999998864
No 118
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-32 Score=272.68 Aligned_cols=191 Identities=19% Similarity=0.165 Sum_probs=154.2
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc---eEEEEEEEcCcccc-----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG---YITRNITVSGYPEK----- 87 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g---~~~G~i~~~g~~~~----- 87 (531)
...++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++. ..+|+|.++|.+..
T Consensus 5 ~~~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 5 EAIIETENLNLFYT--DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred CceEEEeeeEEEeC--CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 34689999999985 356899999888887 999999999999975431 24799999997642
Q ss_pred hhhhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCc----hhhhccH-----HHHHHHHH
Q 042733 88 QETFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELN----PFRQALF-----EQRKRLTV 146 (531)
Q Consensus 88 ~~~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~----~~~~~~~-----GerqRv~i 146 (531)
....++.++|++|++.+++ .|++|+.. .....+++.++.+++. +..++.+ |||||++|
T Consensus 83 ~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~l 161 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCI 161 (254)
T ss_pred HHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHH
Confidence 1235677999999987774 89998721 1123456677777762 3333333 99999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||+|+.+|++|+|||||+|||+.++..+++.|++++ ++.|||++||+++ ++.+.+|++++|++ |+++..|++
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 233 (254)
T PRK14273 162 ARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFLN-GCIEEESST 233 (254)
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999996 4799999999987 56788999999986 999998875
No 119
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-32 Score=276.47 Aligned_cols=188 Identities=23% Similarity=0.316 Sum_probs=154.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc-----hhhhcc
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK-----QETFAR 93 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~-----~~~~~~ 93 (531)
|+++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. ....++
T Consensus 2 l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~ 77 (271)
T PRK13638 2 LATSDLWFRYQ--DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPLDYSKRGLLALRQ 77 (271)
T ss_pred eEEEEEEEEcC--CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEECCEEcccccCCHHHHHh
Confidence 67889999885 356899999888777 99999999999997653 4689999997652 123456
Q ss_pred eEEEEecCCCC-CCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 94 ILGYCEQNDIH-SPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 94 ~igyv~Q~~~~-~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
.++|++|++.. ++..|+.++.. .....+++.++.+++.+..++.+ |||||++||++|+.+|++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~l 157 (271)
T PRK13638 78 QVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARY 157 (271)
T ss_pred heEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 79999998653 34456766411 12234667888899887666654 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 158 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 220 (271)
T PRK13638 158 LLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILTHGAP 220 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999877999999999987 46788999999986 999999875
No 120
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-33 Score=266.98 Aligned_cols=200 Identities=22% Similarity=0.279 Sum_probs=166.6
Q ss_pred hhhhhcccCCCccccccceEEEEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc
Q 042733 8 AIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK 87 (531)
Q Consensus 8 ~i~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~ 87 (531)
.+++++++|+..-+ ..++|+|+++.. ..+.+.|||||||||||+|+|+|..++ .+|+|.++|.++.
T Consensus 4 lL~v~~l~k~FGGl------~Al~~Vsl~v~~------Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it 69 (250)
T COG0411 4 LLEVRGLSKRFGGL------TAVNDVSLEVRP------GEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDIT 69 (250)
T ss_pred eeeeccceeecCCE------EEEeceeEEEcC------CeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccC
Confidence 46677777773333 256777777753 256788888999999999999997653 4689999998764
Q ss_pred h----hhhcceEEEEecCCCCCCCCcHHhHH-----------------------HHHHHHHHHHHHhcCCchhhhccH--
Q 042733 88 Q----ETFARILGYCEQNDIHSPHDTLYDFT-----------------------HCLYMFIEEGMELVELNPFRQALF-- 138 (531)
Q Consensus 88 ~----~~~~~~igyv~Q~~~~~~~ltv~e~~-----------------------~~~~~~~~~~l~~l~l~~~~~~~~-- 138 (531)
. ...+..++-.+|...+|+++||.|+. .+..++..++++.+||.+.++...
T Consensus 70 ~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~ 149 (250)
T COG0411 70 GLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGN 149 (250)
T ss_pred CCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhc
Confidence 2 23456788899999999999999981 122345777899999999988876
Q ss_pred ---HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 139 ---EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 139 ---GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
|||||+.|||||+++|++|+||||.+||.+....++.+.+++++++ |.||+++.||++. +..+||||++|+. |+
T Consensus 150 LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl~~-G~ 227 (250)
T COG0411 150 LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLNY-GE 227 (250)
T ss_pred CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEeccC-Cc
Confidence 8999999999999999999999999999999999999999999985 7999999999984 8899999999996 99
Q ss_pred eeecCCCCC
Q 042733 215 EISVGPLGP 223 (531)
Q Consensus 215 ~v~~G~~~~ 223 (531)
+++.|+|++
T Consensus 228 ~IAeG~P~e 236 (250)
T COG0411 228 VIAEGTPEE 236 (250)
T ss_pred CcccCCHHH
Confidence 999999864
No 121
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-32 Score=276.80 Aligned_cols=191 Identities=20% Similarity=0.281 Sum_probs=153.6
Q ss_pred EEEEEeEEEEEeCCC---ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------
Q 042733 27 YISLNEIVYSVDMPQ---IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ 88 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~---~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------ 88 (531)
.|+++|++++|+... +++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~ 79 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLITSTSKNKD 79 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccC
Confidence 367889988885321 35888888887777 99999999999998653 47999999976431
Q ss_pred -hhhcceEEEEecCC--CCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCch-hhhccH-----HHHHHHHHHH
Q 042733 89 -ETFARILGYCEQND--IHSPHDTLYDFTH-----------CLYMFIEEGMELVELNP-FRQALF-----EQRKRLTVAV 148 (531)
Q Consensus 89 -~~~~~~igyv~Q~~--~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~iA~ 148 (531)
...++.++|++|++ .++ ..|++|+.. .....+++.++.+++.+ ..++.+ |||||++||+
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~ 158 (280)
T PRK13649 80 IKQIRKKVGLVFQFPESQLF-EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAG 158 (280)
T ss_pred HHHHHhheEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 23566799999986 344 469988721 11234667788889863 444443 9999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||+.+|++|+|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++...||++++|++ |+++..|+++
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 230 (280)
T PRK13649 159 ILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-GKLVLSGKPK 230 (280)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999999999999877999999999986 56778999999986 9999888753
No 122
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-32 Score=266.06 Aligned_cols=183 Identities=22% Similarity=0.280 Sum_probs=147.4
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEEE
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGYC 98 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igyv 98 (531)
+++|++++|+. +. .|+|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ...++.++|+
T Consensus 2 ~~~~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 2 RLDKIRFSYGE--QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP--QSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred EEEeEEEEeCC--Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCcCCHhHccEEEE
Confidence 46667666641 11 2566555555 99999999999998653 46899999976532 1234679999
Q ss_pred ecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 99 EQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEP 162 (531)
+|++.+++.+|++|+.. .....+++.++.+++.+..++.+ |||||++||++|+.+|++++||||
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP 155 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEP 155 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999999999998721 12345778899999987666654 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 163 ISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
|+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|
T Consensus 156 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 156 FAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 9999999999999999999764 899999999986 56778999999986 8987654
No 123
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-32 Score=275.08 Aligned_cols=191 Identities=26% Similarity=0.363 Sum_probs=160.5
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++
T Consensus 10 ~~l~i~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~ 85 (265)
T PRK10575 10 TTFALRNVSFRVP--GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP--SEGEILLDAQPLESWSSKAFAR 85 (265)
T ss_pred ceEEEeeEEEEEC--CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEehhhCCHHHHhh
Confidence 4689999999995 357999999888877 99999999999998653 4689999997642 233456
Q ss_pred eEEEEecCCCCCCCCcHHhHHH---------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH---------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVAN 153 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~---------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~ 153 (531)
.++|++|+..+++.+|+.++.. .....+++.++.+++.+..++.+ |||||++||++|+.+
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~ 165 (265)
T PRK10575 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQD 165 (265)
T ss_pred heEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 7999999988888899988622 12335677889999977666554 999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|++|+|||||+|||+.+++.+.+.|++++++ |.|||++||+++ ++.+.||++++|++ |+++..|+++
T Consensus 166 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~~~~~~ 233 (265)
T PRK10575 166 SRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIAQGTPA 233 (265)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCHH
Confidence 9999999999999999999999999999865 899999999987 57788999999986 9999988764
No 124
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-32 Score=271.56 Aligned_cols=190 Identities=20% Similarity=0.225 Sum_probs=152.7
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccc---hhhh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEK---QETF 91 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~---~~~~ 91 (531)
.++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ ...+|+|.++|.+.. ...+
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFG--QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEEC--CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 367778877774 345777777777666 99999999999997542 135799999997653 2345
Q ss_pred cceEEEEecCCCCCCCCcHHhHHH-------------HHHHHHHHHHHhcCCch----hhhcc-----HHHHHHHHHHHH
Q 042733 92 ARILGYCEQNDIHSPHDTLYDFTH-------------CLYMFIEEGMELVELNP----FRQAL-----FEQRKRLTVAVE 149 (531)
Q Consensus 92 ~~~igyv~Q~~~~~~~ltv~e~~~-------------~~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~iA~a 149 (531)
++.+||++|++.+++.+|+.|+.. ...+.+.+.++.+++.+ ..++. .|||||++|||+
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 160 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA 160 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHH
Confidence 678999999998888999998731 11234567788888743 23333 399999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|++||+++ ++.+.||++++|++ |+++..|++
T Consensus 161 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14247 161 LAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK-GQIVEWGPT 229 (250)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-CeEEEECCH
Confidence 9999999999999999999999999999999864 899999999987 46778999999986 999998875
No 125
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.9e-32 Score=260.66 Aligned_cols=178 Identities=39% Similarity=0.664 Sum_probs=149.4
Q ss_pred eEEEEEeEEEEEeCC----CccccccEEEEEcCC---------CchHHHHHHHHhCCC--CCceEEEEEEEcCcccchhh
Q 042733 26 HYISLNEIVYSVDMP----QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRK--PGGYITRNITVSGYPEKQET 90 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~----~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~--~~g~~~G~i~~~g~~~~~~~ 90 (531)
+.++++|++++|+.. .+.+|+++|+.+.+| |||||||+|+|+|.. ++ .+|++.++|.+.....
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~--~~G~i~~~g~~~~~~~ 79 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG--VSGEVLINGRPLDKRS 79 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--CceEEEECCEeCchHh
Confidence 357899999999632 257999999988887 999999999999986 53 5799999998765444
Q ss_pred hcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARA 170 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~ 170 (531)
.++.++|++|++.+++.+|++|+..... . +. ..+.|||||++|||+|+.+|++++|||||+|||+.+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~-~----~~--------~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~ 146 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA-K----LR--------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS 146 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH-H----hc--------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHH
Confidence 5678999999998888999998643111 0 00 445599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 171 ATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 171 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
++.+.+.|++++++|+|+|+++|+++.++.+.||++++|++ |++++.|
T Consensus 147 ~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 147 ALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999877999999999987557788999999986 8988754
No 126
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.6e-32 Score=267.38 Aligned_cols=186 Identities=22% Similarity=0.299 Sum_probs=149.9
Q ss_pred EEEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---h---
Q 042733 27 YISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---E--- 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~--- 89 (531)
.|+++|++++|+.+. ..+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEEcccCCHHHHH
Confidence 467788887775321 24777777777666 99999999999998653 46899999976432 1
Q ss_pred hh-cceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhh
Q 042733 90 TF-ARILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVA 152 (531)
Q Consensus 90 ~~-~~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~ 152 (531)
.. ++.++|++|++.+++.+|+.|+.. .....+++.++.+++.+..++.+ |||||++||++|+.
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~ 163 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG 163 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 11 357999999998888899988721 12345778899999987666654 99999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeee
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS 217 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~ 217 (531)
+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+ +.+|++++|++ |+++.
T Consensus 164 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~i~~ 226 (228)
T PRK10584 164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQLQE 226 (228)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEe
Confidence 99999999999999999999999999999765 899999999987 34 55999999986 88864
No 127
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-32 Score=281.56 Aligned_cols=193 Identities=19% Similarity=0.235 Sum_probs=158.6
Q ss_pred eEEEEEeEEEEEeCC--------CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch
Q 042733 26 HYISLNEIVYSVDMP--------QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ 88 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~--------~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~ 88 (531)
..|+++||++.|+.. ...+|+|||+.+.+| |||||||+++|+|..+. .+|+|.++|.+...
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l~~ 81 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDLLK 81 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEcCc
Confidence 357888888888531 236888888888877 99999999999998653 46999999976432
Q ss_pred ------hhhcceEEEEecCC--CCCCCCcHHhHH------------HHHHHHHHHHHHhcCCch-hhhccH-----HHHH
Q 042733 89 ------ETFARILGYCEQND--IHSPHDTLYDFT------------HCLYMFIEEGMELVELNP-FRQALF-----EQRK 142 (531)
Q Consensus 89 ------~~~~~~igyv~Q~~--~~~~~ltv~e~~------------~~~~~~~~~~l~~l~l~~-~~~~~~-----Gerq 142 (531)
..+++.++|++|++ .+.|.+|+.+.. .....++.+.++.+|+.+ ..++.+ ||||
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~Q 161 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQ 161 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHH
Confidence 23566899999997 578888987652 122356788899999963 445544 9999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 143 RLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 143 Rv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||+||+||+.+|++|++||||+|||+.++.+++++|++++++ |.|+|++|||++ .+.+.||++++|.+ |+++..|+.
T Consensus 162 Rv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~-G~ive~g~~ 239 (327)
T PRK11308 162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL-GRCVEKGTK 239 (327)
T ss_pred HHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999999875 999999999987 46678999999996 999999986
Q ss_pred C
Q 042733 222 G 222 (531)
Q Consensus 222 ~ 222 (531)
+
T Consensus 240 ~ 240 (327)
T PRK11308 240 E 240 (327)
T ss_pred H
Confidence 4
No 128
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-32 Score=281.06 Aligned_cols=194 Identities=13% Similarity=0.191 Sum_probs=155.4
Q ss_pred EEEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCC-Cc-eEEEEEEEcCcccch---hh
Q 042733 27 YISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP-GG-YITRNITVSGYPEKQ---ET 90 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~-~g-~~~G~i~~~g~~~~~---~~ 90 (531)
.|+++||++.|+.+. ..+|+|||+.+.+| |||||||+++|+|..+ ++ ..+|+|.++|.+... ..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 367888888885322 35788888777777 9999999999999764 22 357999999986532 11
Q ss_pred ----hcceEEEEecCC--CCCCCCcHHhHH------------HHHHHHHHHHHHhcCCch---hhhccH-----HHHHHH
Q 042733 91 ----FARILGYCEQND--IHSPHDTLYDFT------------HCLYMFIEEGMELVELNP---FRQALF-----EQRKRL 144 (531)
Q Consensus 91 ----~~~~igyv~Q~~--~~~~~ltv~e~~------------~~~~~~~~~~l~~l~l~~---~~~~~~-----GerqRv 144 (531)
.++.++|++|++ .+.|.+|+.++. .+..+++.+.++.+|+.+ ..++.. ||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 224699999997 478888887541 123456788899999964 233333 999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+||+||+.+|++|++||||+|||+.++.+++++|+++++ .|.|+|++|||++ .+.+.+|++++|.+ |+++..|+++
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~-G~ive~g~~~ 239 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYA-GQVVETGKAH 239 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999999999999987 4999999999987 46778999999996 9999999864
No 129
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.7e-32 Score=265.95 Aligned_cols=184 Identities=22% Similarity=0.256 Sum_probs=151.1
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEEE
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGYC 98 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igyv 98 (531)
+++|+++.|+ ..++++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.++|+
T Consensus 2 ~~~~l~~~~~----~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~i~~v 75 (213)
T TIGR01277 2 ALDKVRYEYE----HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLAPYQRPVSML 75 (213)
T ss_pred eEEeeeEEeC----CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcccCChhccceEEE
Confidence 5677777764 1355677666655 99999999999998653 46899999976532 2345679999
Q ss_pred ecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 99 EQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEP 162 (531)
+|++.+++.+|+.|+.. .....++++++.+++.+..++.+ |||||++||++|+.+|++++||||
T Consensus 76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 155 (213)
T TIGR01277 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEP 155 (213)
T ss_pred eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999998899998732 11245677899999987766654 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 163 ISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
|+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|.
T Consensus 156 t~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 156 FSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 9999999999999999999865 899999999986 46778999999986 99988774
No 130
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.4e-32 Score=271.66 Aligned_cols=190 Identities=19% Similarity=0.235 Sum_probs=151.9
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh-hcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-FARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-~~~~ 94 (531)
|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+..+.+|+|.++|.+... .. .+..
T Consensus 1 l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVE--DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEEC--CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 36788888885 356888888877777 999999999999983101357999999976432 12 2344
Q ss_pred EEEEecCCCCCCCCcHHhHHHH------------------HHHHHHHHHHhcCCc-hhhh------ccHHHHHHHHHHHH
Q 042733 95 LGYCEQNDIHSPHDTLYDFTHC------------------LYMFIEEGMELVELN-PFRQ------ALFEQRKRLTVAVE 149 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~~------------------~~~~~~~~l~~l~l~-~~~~------~~~GerqRv~iA~a 149 (531)
++|++|++.+++.+|+.++... ..+.+++.++.+++. ...+ .+.|||||++||++
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~a 158 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQM 158 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHH
Confidence 8999999999999999886210 123466778888886 3332 33499999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhc-cCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYS-FDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~d~v~lL~~~G~~v~~G~~ 221 (531)
|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... ||++++|++ |+++..|++
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G~i~~~g~~ 229 (243)
T TIGR01978 159 ALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-GRIVKSGDV 229 (243)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-CEEEEecCH
Confidence 99999999999999999999999999999999877899999999987 45666 799999986 999998875
No 131
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-32 Score=271.22 Aligned_cols=190 Identities=21% Similarity=0.214 Sum_probs=153.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc---eEEEEEEEcCcccc-----hh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG---YITRNITVSGYPEK-----QE 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g---~~~G~i~~~g~~~~-----~~ 89 (531)
.|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++. ..+|+|.++|.+.. ..
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYG--SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeC--CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 478888888885 346888888877777 999999999999986532 24799999997653 12
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHHH-------------HHHHHHHHHHhcCCch----hhhcc-----HHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTHC-------------LYMFIEEGMELVELNP----FRQAL-----FEQRKRLTVA 147 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~~-------------~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~iA 147 (531)
.+++.++|++|++.+++.+|+.|+... ....++++++.+++.+ ..++. .|||||++||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIA 161 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHH
Confidence 356679999999999999999987321 1124567778888732 23333 3999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++...||++++|++ |+++..|++
T Consensus 162 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 232 (253)
T PRK14267 162 RALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYL-GKLIEVGPT 232 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999865 699999999987 56778999999986 999998875
No 132
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1e-32 Score=270.57 Aligned_cols=189 Identities=20% Similarity=0.231 Sum_probs=153.3
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---h-hhcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---E-TFARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~-~~~~~ 94 (531)
|+++||++.|+ ++++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... . ..++.
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~ 76 (230)
T TIGR03410 1 LEVSNLNVYYG--QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLDGEDITKLPPHERARAG 76 (230)
T ss_pred CEEEeEEEEeC--CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECCCCCHHHHHHhC
Confidence 36788888885 356888888888877 99999999999998653 46899999876431 1 23467
Q ss_pred EEEEecCCCCCCCCcHHhHHHH--------HHHHHHHHHHhcC-CchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 95 LGYCEQNDIHSPHDTLYDFTHC--------LYMFIEEGMELVE-LNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~~--------~~~~~~~~l~~l~-l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
++|++|++.+++.+|+.++... .....++.++.++ +.+..++.+ |||||++||++|+.+|++++||
T Consensus 77 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlD 156 (230)
T TIGR03410 77 IAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLD 156 (230)
T ss_pred eEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 9999999999998999987221 1223456666665 444444444 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||+|||+.++..+.+.|++++++ |+|||++||+++ ++...||+++++++ |+++..|+.+
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 217 (230)
T TIGR03410 157 EPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVASGAGD 217 (230)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999875 899999999987 57778999999986 9999998864
No 133
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-32 Score=276.56 Aligned_cols=194 Identities=20% Similarity=0.245 Sum_probs=158.8
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCce-EEEEEEEcCcccch---hhhc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGY-ITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~-~~G~i~~~g~~~~~---~~~~ 92 (531)
..|+++|+++.|+...+++|+++|+.+.+| |||||||+|+|+|..++.. ..|+|.++|.+... ...+
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 357899999998533346899999888777 9999999999999764311 24899999987532 2345
Q ss_pred ceEEEEecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCC
Q 042733 93 RILGYCEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPS 155 (531)
Q Consensus 93 ~~igyv~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ 155 (531)
+.+||++|++. .++..||.|+.. ...+++++.++.+++.+..++.+ |||||++||+||+.+|+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~ 163 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPK 163 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 67999999974 567789998721 12245777899999987766655 99999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 156 IISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|+|||||+|||+.++..+.+.|++++++ |+|||++||+++. + ..||++++|++ |+++..|+++
T Consensus 164 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~-G~i~~~g~~~ 228 (282)
T PRK13640 164 IIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDD-GKLLAQGSPV 228 (282)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999865 8999999999874 4 57999999986 9999999863
No 134
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-32 Score=261.92 Aligned_cols=185 Identities=27% Similarity=0.456 Sum_probs=148.2
Q ss_pred EEEEEeEEEEEeCC--CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc-eEEEEEEEcCcccch--hhhc
Q 042733 27 YISLNEIVYSVDMP--QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG-YITRNITVSGYPEKQ--ETFA 92 (531)
Q Consensus 27 ~l~~~~ls~~~~~~--~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g-~~~G~i~~~g~~~~~--~~~~ 92 (531)
.++|+|++|.|+.+ ++.+|+++|+.+.+| |||||||+++|+|..++. ..+|++.++|.+... ...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 57999999999754 457999999988887 999999999999986522 457999999986532 2356
Q ss_pred ceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAAT 172 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~ 172 (531)
+.++|++|++.+++.+||+|+...... . . .-....+.+.|||||++||+||+.+|++++|||||+|||+.+++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~-~----~--~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~ 155 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALR-C----K--GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTAL 155 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhh-h----c--cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHH
Confidence 779999999999999999987432111 0 0 11223344559999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 173 TVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 173 ~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
.+.+.|++++++ +.|+|+++|+...++.+.||++++|++ |+++..|
T Consensus 156 ~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~g 202 (202)
T cd03233 156 EILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYYG 202 (202)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEecC
Confidence 999999999875 677777766654467889999999996 9988754
No 135
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-32 Score=275.49 Aligned_cols=190 Identities=23% Similarity=0.309 Sum_probs=157.4
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-----hhhcc
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-----ETFAR 93 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-----~~~~~ 93 (531)
++++|++++|+ +.+.+++|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++
T Consensus 2 l~~~~l~~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~ 78 (275)
T PRK13639 2 LETRDLKYSYP-DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIKYDKKSLLEVRK 78 (275)
T ss_pred EEEEEEEEEeC-CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEECccccchHHHHHh
Confidence 67889999885 2346889999888877 99999999999998653 46899999976521 23467
Q ss_pred eEEEEecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 94 ILGYCEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 94 ~igyv~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
.++|++|++. .+...|+.|+.. .....+.++++.+++.+..++.+ |||||++||++|+.+|++
T Consensus 79 ~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 158 (275)
T PRK13639 79 TVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEI 158 (275)
T ss_pred heEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 8999999963 334579988721 12245778899999987777665 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |+++..|+++
T Consensus 159 lllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 222 (275)
T PRK13639 159 IVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIKEGTPK 222 (275)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999877999999999987 56778999999986 9999998863
No 136
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-32 Score=270.62 Aligned_cols=188 Identities=22% Similarity=0.252 Sum_probs=152.6
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~ 78 (241)
T PRK14250 3 EIEFKEVSYSSF--GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP--TEGSILIDGVDIKTIDVIDLRRK 78 (241)
T ss_pred eEEEEeEEEEeC--CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhhhcChHHhhhc
Confidence 467777777774 345777777777666 99999999999997653 46899999976432 234667
Q ss_pred EEEEecCCCCCCCCcHHhHHH-------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH-------CLYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~-------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
++|++|++.+++ .|++|+.. .....+.+.++.+++. +..++.+ |||||++||+||+.+|++|+|||
T Consensus 79 i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 157 (241)
T PRK14250 79 IGMVFQQPHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDE 157 (241)
T ss_pred EEEEecCchhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999987776 69988722 1123567788999996 4555543 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 162 PISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||+|||+.+++.+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (241)
T PRK14250 158 PTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVEYAKT 216 (241)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEeCCH
Confidence 99999999999999999999874 999999999987 56778999999996 999988875
No 137
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-32 Score=270.74 Aligned_cols=191 Identities=20% Similarity=0.285 Sum_probs=154.2
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC---CceEEEEEEEcCcccch----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP---GGYITRNITVSGYPEKQ---- 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~---~g~~~G~i~~~g~~~~~---- 88 (531)
|..|+++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..+ ....+|+|.++|.+...
T Consensus 4 ~~~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 4 PPKMEARGLSFFYG--DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred CcEEEEeeeEEEEC--CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 55689999999995 356899999888877 9999999999999742 11247999999976431
Q ss_pred -hhhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhc-----cHHHHHHHHH
Q 042733 89 -ETFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQA-----LFEQRKRLTV 146 (531)
Q Consensus 89 -~~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~-----~~GerqRv~i 146 (531)
..+++.++|++|++.+++ .|+.|+.. .....+++.++.+++.+ ..++ +.||||||+|
T Consensus 82 ~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 160 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCI 160 (253)
T ss_pred HHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence 234678999999988877 59988721 11234666788888743 2232 2399999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 232 (253)
T PRK14242 161 ARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYM-GKLIEVGPT 232 (253)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999999999999954 799999999987 56788999999986 999988875
No 138
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-32 Score=275.52 Aligned_cols=191 Identities=17% Similarity=0.235 Sum_probs=154.7
Q ss_pred EEEEEeEEEEEeCC----CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----h
Q 042733 27 YISLNEIVYSVDMP----QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~----~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~ 89 (531)
.++++|++++|+.. .+.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP--SEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeccccccHH
Confidence 47788888888532 245888888877776 99999999999998653 46899999976532 2
Q ss_pred hhcceEEEEecCCC-CCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhh
Q 042733 90 TFARILGYCEQNDI-HSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVA 152 (531)
Q Consensus 90 ~~~~~igyv~Q~~~-~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~ 152 (531)
..++.+||++|++. .+...|+.++. ......++++++.+|+.+..++.+ |||||++||++|+.
T Consensus 82 ~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~ 161 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM 161 (280)
T ss_pred HHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 35678999999974 23345777651 112345778899999988777665 99999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|++++|||||+|||+.++..+.+.|++++++ |.|||++||+++. +. .||++++|++ |+++..|+++
T Consensus 162 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~v~~l~~-G~i~~~g~~~ 229 (280)
T PRK13633 162 RPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADRIIVMDS-GKVVMEGTPK 229 (280)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999999999999999764 9999999999873 54 4999999986 9999999863
No 139
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-32 Score=258.54 Aligned_cols=179 Identities=45% Similarity=0.732 Sum_probs=146.4
Q ss_pred EEEEEeEEEEEeCC--CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceE
Q 042733 27 YISLNEIVYSVDMP--QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARIL 95 (531)
Q Consensus 27 ~l~~~~ls~~~~~~--~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~i 95 (531)
.++++|+++.|+.+ ++++|+++|+.+.+| |||||||+|+|+|.......+|++.++|.+.. ...++.+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i 81 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNFQRST 81 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHhhhce
Confidence 46889999998632 246899999888777 99999999999996421235799999998754 3456679
Q ss_pred EEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 042733 96 GYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVI 175 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~ 175 (531)
+|++|++.+++..|++|+..... .++ ..+.|||||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~-----~~~--------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~ 148 (192)
T cd03232 82 GYVEQQDVHSPNLTVREALRFSA-----LLR--------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIV 148 (192)
T ss_pred EEecccCccccCCcHHHHHHHHH-----HHh--------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHH
Confidence 99999998899999998743211 011 44559999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 176 RMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 176 ~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
+.|++++++|+|+|++||+++.++.+.||++++|+++|++++.|
T Consensus 149 ~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 149 RFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999987799999999998744678899999998438998765
No 140
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-32 Score=275.88 Aligned_cols=191 Identities=21% Similarity=0.306 Sum_probs=153.8
Q ss_pred EEEEEeEEEEEeCCC---ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc-------
Q 042733 27 YISLNEIVYSVDMPQ---IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK------- 87 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~---~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~------- 87 (531)
.|+++|++++|+... ..+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+..
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEccccccccc
Confidence 578999999996321 25899999888877 99999999999998653 4689999987542
Q ss_pred -hhhhcceEEEEecCCCC-CCCCcHHhHHH-----------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHH
Q 042733 88 -QETFARILGYCEQNDIH-SPHDTLYDFTH-----------CLYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAV 148 (531)
Q Consensus 88 -~~~~~~~igyv~Q~~~~-~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~ 148 (531)
...+++.++|++|++.. ....|++|+.. .....+++.++.+++. +..++.+ |||||++|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 12356679999998632 23458888621 1123466778888984 5555544 9999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||+.+|++|+|||||+|||+.+++.+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 235 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE-GKVISIGSP 235 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999764 899999999987 57788999999986 999998875
No 141
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.9e-32 Score=271.81 Aligned_cols=189 Identities=24% Similarity=0.342 Sum_probs=157.3
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~i 95 (531)
|+++|+++.|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ...++.+
T Consensus 2 l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i 77 (256)
T TIGR03873 2 LRLSRVSWSAG--GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLAGVDLHGLSRRARARRV 77 (256)
T ss_pred ceEEeEEEEEC--CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEEcccCCHHHHhhhe
Confidence 57888888885 356888888887776 99999999999997653 46899999976432 2345579
Q ss_pred EEEecCCCCCCCCcHHhHHH---------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCC
Q 042733 96 GYCEQNDIHSPHDTLYDFTH---------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPS 155 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~---------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ 155 (531)
+|++|++.+++..|+.|+.. .....+.+.++.+++.+..++.+ |||||++||++|+.+|+
T Consensus 78 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (256)
T TIGR03873 78 ALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPK 157 (256)
T ss_pred EEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 99999987778889998721 11234677888899987666655 99999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 156 IISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+++|||||+|||+.++..+.+.|++++++|.|||++||+++ .+.+.||++++|++ |+++..|+.+
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 222 (256)
T TIGR03873 158 LLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAGPPR 222 (256)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEecCHH
Confidence 99999999999999999999999999877899999999987 57788999999986 9999998764
No 142
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-32 Score=286.45 Aligned_cols=184 Identities=18% Similarity=0.228 Sum_probs=149.7
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh----hcceEEEEecC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET----FARILGYCEQN 101 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~----~~~~igyv~Q~ 101 (531)
.++|+++++.. .++.+.+||||||||||+|+|+|..++ .+|+|.++|.+... .. .++.+||++|+
T Consensus 43 ~L~~isl~i~~------Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~ 114 (400)
T PRK10070 43 GVKDASLAIEE------GEIFVIMGLSGSGKSTMVRLLNRLIEP--TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQS 114 (400)
T ss_pred EEEeEEEEEcC------CCEEEEECCCCchHHHHHHHHHcCCCC--CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECC
Confidence 45555555532 234555566699999999999998653 46899999986532 11 23579999999
Q ss_pred CCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 042733 102 DIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISG 165 (531)
Q Consensus 102 ~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsg 165 (531)
..+++++|++|+.. ...+++++.++.+++.+..++.+ ||||||+|||||+.+|++|||||||+|
T Consensus 115 ~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~ 194 (400)
T PRK10070 115 FALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA 194 (400)
T ss_pred CcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 99999999999721 12345778899999988777665 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 166 LDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 166 LD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||+.++..+.+.|+++++ .|+|||++||+++ ++..+||++++|++ |+++..|+++
T Consensus 195 LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~~ 250 (400)
T PRK10070 195 LDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTPD 250 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCHH
Confidence 999999999999999976 4899999999987 57788999999986 9999998764
No 143
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-32 Score=269.53 Aligned_cols=190 Identities=18% Similarity=0.248 Sum_probs=151.2
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCC---CCceEEEEEEEcCcccch-----
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRK---PGGYITRNITVSGYPEKQ----- 88 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~---~~g~~~G~i~~~g~~~~~----- 88 (531)
+.++++|+++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|.. ++...+|++.++|.+...
T Consensus 2 ~~l~~~~~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 2 VKIDARDVNFWYG--DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred cEEEEEEEEEEEC--CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 3567888888874 346788888777766 999999999999952 221246999999986532
Q ss_pred hhhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhcc-----HHHHHHHHHH
Q 042733 89 ETFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQAL-----FEQRKRLTVA 147 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~iA 147 (531)
...++.++|++|++.+++ .|+.|+.. .....+++.++.+++.+ ..+.. .|||||++||
T Consensus 80 ~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIA 158 (250)
T ss_pred HHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHH
Confidence 234667999999988776 59988721 11234667788888743 23333 3999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|+.+|++++|||||+|||+.++..+.+.|++++ +++|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 159 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~~~~~~~~ 229 (250)
T PRK14245 159 RAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GEMVEYDDT 229 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999985 4799999999987 57788999999986 999999975
No 144
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-32 Score=297.31 Aligned_cols=194 Identities=19% Similarity=0.292 Sum_probs=159.5
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---h-hhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---E-TFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~-~~~~ 93 (531)
.|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+++..+|+|.++|.+... . ..++
T Consensus 5 ~l~~~nl~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFG--GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeC--CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 467778887774 345777777776666 999999999999976532357999999976532 1 2346
Q ss_pred eEEEEecCCCCCCCCcHHhHHH--------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH--------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~--------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
.+||++|++.+++.+||+|+.. .....+++.++.+++.+..++.+ ||||||+||++|+.+|
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p 162 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence 7999999998889999998621 11245778899999977666655 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPS 224 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~ 224 (531)
++|||||||+|||+.++..+.+.|++++++|.|||++||+++ .+.+.||++++|++ |++++.|++++.
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~ 230 (506)
T PRK13549 163 RLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGTRPAAGM 230 (506)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeeecccccC
Confidence 999999999999999999999999999878999999999987 56778999999986 999999987653
No 145
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-32 Score=266.49 Aligned_cols=188 Identities=22% Similarity=0.331 Sum_probs=156.7
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGY 97 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igy 97 (531)
|+++|++++|+ .+.+++++|+.+.|| |||||||+|+|+|..++ ..|+|.++|.+... ...++.++|
T Consensus 1 l~~~~l~~~~~--~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYG--GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITNLPPHKRPVNT 76 (232)
T ss_pred CEEEeEEEEeC--CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCChhhcceEE
Confidence 36788888885 346888888888877 99999999999998653 46899999976532 123567999
Q ss_pred EecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 98 CEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
++|++.+++.+|+.++.. .....++++++.+++.+..++.+ |||||++|||+|+.+|++++|||
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDE 156 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999888899988722 11235677888999987766655 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 162 PISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++ |+++..|+.
T Consensus 157 P~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 157 PLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999875 899999999986 47788999999986 999988864
No 146
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-32 Score=269.84 Aligned_cols=175 Identities=22% Similarity=0.246 Sum_probs=154.5
Q ss_pred cccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hh---h-hcceEEEEecCCCCCCCC
Q 042733 45 LNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QE---T-FARILGYCEQNDIHSPHD 108 (531)
Q Consensus 45 L~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~---~-~~~~igyv~Q~~~~~~~l 108 (531)
++|+|+.++.| |||||||+|+|.++.++ ..|+|.++|.++. .. + .++.+++|+|+..++|+.
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep--t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP--TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC--CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 45666666666 99999999999998764 5799999998753 11 2 356899999999999999
Q ss_pred cHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 042733 109 TLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAAT 172 (531)
Q Consensus 109 tv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~ 172 (531)
||.|+ +.+++++..+.++.+||..+.++.+ ||||||.+||||+.+|+||++|||+|.|||--+.
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~ 201 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRT 201 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHH
Confidence 99998 5677888999999999999998887 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 173 TVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 173 ~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
++.+.|.++.++ ++|||++|||.+ |..++-|||.+|++ |+++-.|+|++
T Consensus 202 ~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimkd-G~ivQ~Gtp~e 251 (386)
T COG4175 202 EMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMKD-GEIVQVGTPEE 251 (386)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEecC-CeEEEeCCHHH
Confidence 999999999875 999999999998 68899999999986 99999999864
No 147
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-32 Score=283.62 Aligned_cols=172 Identities=20% Similarity=0.351 Sum_probs=146.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hhhcceEEEEecCCCCCCCCcHHhHHH----
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ETFARILGYCEQNDIHSPHDTLYDFTH---- 115 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~~~~~igyv~Q~~~~~~~ltv~e~~~---- 115 (531)
++.+.+||||||||||||+|+|..++ .+|+|.++|.+... ...++.++|++|+..+++++||+|+..
T Consensus 25 e~~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 102 (352)
T PRK11144 25 GITAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA 102 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh
Confidence 34566666799999999999998653 46899999976421 224578999999999999999999832
Q ss_pred -HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeE
Q 042733 116 -CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTV 188 (531)
Q Consensus 116 -~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tv 188 (531)
.....+++.++.+++.+..++.+ ||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+
T Consensus 103 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ti 182 (352)
T PRK11144 103 KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI 182 (352)
T ss_pred hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 22356788999999988777665 9999999999999999999999999999999999999999999875 8999
Q ss_pred EEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 189 VCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 189 i~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|++||+++ ++..+||++++|++ |+++..|+++
T Consensus 183 i~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 214 (352)
T PRK11144 183 LYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPLE 214 (352)
T ss_pred EEEecCHH-HHHHhCCEEEEEeC-CEEEEecCHH
Confidence 99999986 57889999999996 9999999864
No 148
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-32 Score=268.50 Aligned_cols=191 Identities=18% Similarity=0.219 Sum_probs=154.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--C-ceEEEEEEEcCcccch-----h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--G-GYITRNITVSGYPEKQ-----E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~-g~~~G~i~~~g~~~~~-----~ 89 (531)
.++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+ + ...+|+|.++|.+... .
T Consensus 4 ~l~~~nl~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 4 KVKLEQLNVHFG--KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred EEEEEEEEEEeC--CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 478889998885 356899999888777 9999999999999753 2 1246999999976531 2
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhc-----cHHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQA-----LFEQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~-----~~GerqRv~iA~ 148 (531)
..++.++|++|+..+++..|+.|+.. .....+++.++.+++.. ..+. +.|||||++||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 161 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR 161 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence 35678999999999999899988721 11234567778888753 2222 239999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|+.+|++|+|||||+|||+.+++.+.+.|+++++ ++|||++||+++ ++.+.||++++|++ |+++..|+++
T Consensus 162 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 232 (252)
T PRK14256 162 TIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-GDLVECGETK 232 (252)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999999999975 689999999987 56788999999986 9999998753
No 149
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3.8e-32 Score=267.89 Aligned_cols=188 Identities=23% Similarity=0.336 Sum_probs=157.4
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchh-hhcceEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQE-TFARILGY 97 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~-~~~~~igy 97 (531)
++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ ..|++.++|.+.... ..++.++|
T Consensus 1 i~i~~l~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~i~g~~~~~~~~~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFG--SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLNGQDATRVHARDRKIGF 76 (237)
T ss_pred CEEEEEEEEEC--CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCChhhcCEEE
Confidence 36788888885 356889988888877 99999999999998653 468999999765321 23567999
Q ss_pred EecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 98 CEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
++|++.+++..|+.|+.. ...+.+++.++.+++.+..++.. |||||++||++|+.+|++++|||
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDE 156 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999888899988721 11234677888999877666654 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 162 PISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 157 P~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 157 PFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 99999999999999999998876 899999999986 56788999999986 999998875
No 150
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-33 Score=252.49 Aligned_cols=172 Identities=21% Similarity=0.261 Sum_probs=144.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc-------------h---hhhcceEEEEecCCCCCCCCcH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK-------------Q---ETFARILGYCEQNDIHSPHDTL 110 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~-------------~---~~~~~~igyv~Q~~~~~~~ltv 110 (531)
||--.+|.+||||||+||||.-+..+ ..|.|.++|..+. . ..+|.+.|+|+|+.+++.++||
T Consensus 33 dVisIIGsSGSGKSTfLRCiN~LE~P--~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtv 110 (256)
T COG4598 33 DVISIIGSSGSGKSTFLRCINFLEKP--SAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTV 110 (256)
T ss_pred CEEEEecCCCCchhHHHHHHHhhcCC--CCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHH
Confidence 44445566699999999999986543 3578888875421 1 2345679999999999999999
Q ss_pred HhH------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 042733 111 YDF------------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATT 173 (531)
Q Consensus 111 ~e~------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~ 173 (531)
.|+ +.+..++.+..+..+|+.+.++... ||+||++|||||+.+|+++++|||||.|||.-.-+
T Consensus 111 LeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgE 190 (256)
T COG4598 111 LENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGE 190 (256)
T ss_pred HHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHH
Confidence 998 3444566788899999998888665 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 174 VIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 174 i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+++.+++++++|+|.+++||.+.. ..+...+|+.|.+ |++-..|+|+
T Consensus 191 VLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~-G~iEE~G~P~ 237 (256)
T COG4598 191 VLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ-GKIEEEGPPE 237 (256)
T ss_pred HHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec-ceecccCChH
Confidence 999999999999999999999864 4557789999996 9999999985
No 151
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-32 Score=270.01 Aligned_cols=194 Identities=19% Similarity=0.188 Sum_probs=157.0
Q ss_pred cccceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--C-ceEEEEEEEcCcccc--
Q 042733 22 LFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--G-GYITRNITVSGYPEK-- 87 (531)
Q Consensus 22 ~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~-g~~~G~i~~~g~~~~-- 87 (531)
|.....++++|+++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+ + .+.+|+|.++|.+..
T Consensus 8 ~~~~~~l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~ 85 (260)
T PRK10744 8 ATAPSKIQVRNLNFYYG--KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTP 85 (260)
T ss_pred cCCCceEEEEEEEEEeC--CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccc
Confidence 44456789999999995 356999999888877 9999999999999753 1 125799999997652
Q ss_pred ---hhhhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCc----hhhhcc-----HHHHHH
Q 042733 88 ---QETFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELN----PFRQAL-----FEQRKR 143 (531)
Q Consensus 88 ---~~~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~----~~~~~~-----~GerqR 143 (531)
...+++.++|++|++.+++ .|++++.. ....++++.++.+++. +..++. .|||||
T Consensus 86 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 164 (260)
T PRK10744 86 KQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQR 164 (260)
T ss_pred ccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHH
Confidence 1235678999999988777 79988721 1124567788888873 223333 399999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 144 v~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++||++|+.+|++|+|||||+|||+.+++.+.+.|++++ ++.|||++||+++ ++.+.+|++++|++ |+++..|++
T Consensus 165 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 239 (260)
T PRK10744 165 LCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTAFMYL-GELIEFGNT 239 (260)
T ss_pred HHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999996 4789999999986 46778999999986 999998875
No 152
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-32 Score=265.60 Aligned_cols=186 Identities=20% Similarity=0.231 Sum_probs=152.3
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchh-hhcceEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQE-TFARILGY 97 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~-~~~~~igy 97 (531)
++++||+++|+. . ..++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+.... ..++.++|
T Consensus 2 l~~~~l~~~~~~--~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHH--L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP--ASGSLTLNGQDHTTTPPSRRPVSM 75 (232)
T ss_pred eEEEEEEEEECC--c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCeecCcCChhhccEEE
Confidence 567777777742 1 12666666655 99999999999998653 468999999865321 22457999
Q ss_pred EecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 98 CEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
++|++.+++.+|+.|+.. .....+++.++.+++.+..++.+ |||||++||++++.+|++++|||
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 155 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDE 155 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999999899998721 12345778899999987777665 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 162 PISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||+|||+.+++.+.+.|++++++ |+|+|++||+++ ++.+.||++++|++ |++++.|++
T Consensus 156 P~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 156 PFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999998764 899999999987 56788999999986 999998875
No 153
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-32 Score=278.05 Aligned_cols=194 Identities=12% Similarity=0.199 Sum_probs=155.1
Q ss_pred EEEEEeEEEEEeCC--CccccccEEEEEcCC---------CchHHHHHHHHhCCCCC--ceEEEEEEEcCcccch---hh
Q 042733 27 YISLNEIVYSVDMP--QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG--GYITRNITVSGYPEKQ---ET 90 (531)
Q Consensus 27 ~l~~~~ls~~~~~~--~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~--g~~~G~i~~~g~~~~~---~~ 90 (531)
.|+++||++.|+.+ ...+|+|||+.+.+| |||||||+|+|+|..+. ...+|+|.++|.+... ..
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 46888888888532 235888888887777 99999999999997542 1357999999976421 11
Q ss_pred ----hcceEEEEecCCC--CCCCCcHHhHHH-----------------HHHHHHHHHHHhcCCchh---hhcc-----HH
Q 042733 91 ----FARILGYCEQNDI--HSPHDTLYDFTH-----------------CLYMFIEEGMELVELNPF---RQAL-----FE 139 (531)
Q Consensus 91 ----~~~~igyv~Q~~~--~~~~ltv~e~~~-----------------~~~~~~~~~l~~l~l~~~---~~~~-----~G 139 (531)
.++.++|++|++. +.|.+|+.++.. .....+.+.++.+||.+. .++. .|
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG 162 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEG 162 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHH
Confidence 2357999999975 567888876521 112456788999999742 3333 39
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeec
Q 042733 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISV 218 (531)
Q Consensus 140 erqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~ 218 (531)
|||||+||+||+.+|++|++||||+|||+.++.+++++|++++++ |.|||++|||++ .+.+.||++++|++ |+++..
T Consensus 163 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~-G~ive~ 240 (330)
T PRK15093 163 ECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYC-GQTVET 240 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999875 999999999987 57788999999996 999999
Q ss_pred CCCC
Q 042733 219 GPLG 222 (531)
Q Consensus 219 G~~~ 222 (531)
|+.+
T Consensus 241 g~~~ 244 (330)
T PRK15093 241 APSK 244 (330)
T ss_pred CCHH
Confidence 9863
No 154
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-32 Score=268.97 Aligned_cols=191 Identities=17% Similarity=0.206 Sum_probs=152.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc---eEEEEEEEcCcccc-----hh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG---YITRNITVSGYPEK-----QE 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g---~~~G~i~~~g~~~~-----~~ 89 (531)
.++++|++++|+ .+.+|+++|+.+.+| |||||||+|+|+|..++. +.+|+|.++|.+.. ..
T Consensus 4 ~l~i~~v~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYG--SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEEC--CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 467888888874 346788888777776 999999999999975421 24799999997642 12
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCc----hhhhcc-----HHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELN----PFRQAL-----FEQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~----~~~~~~-----~GerqRv~iA~ 148 (531)
..++.++|++|++.+++.+|++|+.. ...+.+++.++.+++. +..++. .||||||+|||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 161 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIAR 161 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 35677999999998999999998721 1123456678888873 233333 39999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc-----cCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK-----QVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~-----~~G~~v~~G~~ 221 (531)
+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|+ ++|++++.|++
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 162 AIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDT 237 (258)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCH
Confidence 99999999999999999999999999999999964 689999999987 5678899999996 24899999875
No 155
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=5.9e-32 Score=271.21 Aligned_cols=191 Identities=18% Similarity=0.263 Sum_probs=152.3
Q ss_pred EEEEEeEEEEEeCC-------CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--
Q 042733 27 YISLNEIVYSVDMP-------QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-- 88 (531)
Q Consensus 27 ~l~~~~ls~~~~~~-------~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-- 88 (531)
.|+++||+++|+.+ .+++|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHPLHFGD 81 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECCCCc
Confidence 47788888888421 235888888777766 99999999999998653 46899999976532
Q ss_pred -hhhcceEEEEecCCC--CCCCCcHHhHHH------------HHHHHHHHHHHhcCCc-hhhhcc-----HHHHHHHHHH
Q 042733 89 -ETFARILGYCEQNDI--HSPHDTLYDFTH------------CLYMFIEEGMELVELN-PFRQAL-----FEQRKRLTVA 147 (531)
Q Consensus 89 -~~~~~~igyv~Q~~~--~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~-~~~~~~-----~GerqRv~iA 147 (531)
...++.++|++|++. +.+.+|+.++.. ...+.+++.++.+++. +..+.. .||||||+||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 223457999999874 567778776511 1223567789999994 444444 3999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++...||++++|++ |+++..|++
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 234 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEVVERGST 234 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 9999999999999999999999999999999999875 899999999987 57778999999986 999988875
No 156
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-32 Score=270.13 Aligned_cols=196 Identities=17% Similarity=0.183 Sum_probs=159.0
Q ss_pred cccccceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccc
Q 042733 20 VLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEK 87 (531)
Q Consensus 20 ~~~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~ 87 (531)
.+|.....|+++|++++|+ ++++|+|+|+.+.+| |||||||+|+|+|..++ ...+|+|.++|.+..
T Consensus 13 ~~~~~~~~l~~~nl~~~~~--~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 13 TFPEEEIALSTKDLHVYYG--KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred ecCCCCeEEEEeeEEEEEC--CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 3445566899999999995 467999999999888 99999999999997542 135799999997653
Q ss_pred h-----hhhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhcc-----HHHH
Q 042733 88 Q-----ETFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQAL-----FEQR 141 (531)
Q Consensus 88 ~-----~~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~~-----~Ger 141 (531)
. ...++.++|++|++.+++ .|++|+.. .....+.+.++.+++.+ ..++. .|||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 91 RKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQ 169 (267)
T ss_pred cccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHH
Confidence 1 234667999999988776 69998721 11234566778887742 23333 3999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 142 KRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 142 qRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ ++.|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 246 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFYL-GDLIEYDKT 246 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999999999985 4789999999987 57788999999986 999999985
No 157
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-32 Score=270.23 Aligned_cols=191 Identities=19% Similarity=0.207 Sum_probs=155.8
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccch----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEKQ---- 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~~---- 88 (531)
...|+++|++++|+ ++.+|+|+|+.+.|| |||||||+|+|+|..++ ...+|+|.++|.+...
T Consensus 17 ~~~l~~~nl~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYG--EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEEC--CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 44789999999995 457999999999888 99999999999997542 1257999999976531
Q ss_pred -hhhcceEEEEecCCCCCCCCcHHhHHH-------------HHHHHHHHHHHhcCCch----hhhcc-----HHHHHHHH
Q 042733 89 -ETFARILGYCEQNDIHSPHDTLYDFTH-------------CLYMFIEEGMELVELNP----FRQAL-----FEQRKRLT 145 (531)
Q Consensus 89 -~~~~~~igyv~Q~~~~~~~ltv~e~~~-------------~~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~ 145 (531)
..+++.++|++|++.+++. |+.|+.. .....+++.++.+++.+ ..++. .|||||++
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 173 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLC 173 (267)
T ss_pred hHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 2356779999999887774 9988721 11234567788888853 22332 39999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+...||++++|++ |+++..|++
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 246 (267)
T PRK14235 174 IARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHL-GNLVEVGDT 246 (267)
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999999865 789999999987 46778999999986 999998874
No 158
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-32 Score=253.31 Aligned_cols=190 Identities=24% Similarity=0.332 Sum_probs=161.5
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~i 95 (531)
|+.+|+||+.. .+.+|+++|+++.|| |||||||||.|+|...+ .+|++.++|.+... ....+..
T Consensus 2 i~a~nls~~~~--Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p--~~G~v~~~g~~l~~~~~~~lA~~r 77 (259)
T COG4559 2 IRAENLSYSLA--GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP--DSGEVTLNGVPLNSWPPEELARHR 77 (259)
T ss_pred eeeeeeEEEee--cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC--CCCeEeeCCcChhhCCHHHHHHHh
Confidence 68899999885 577899888766655 99999999999996543 35899999987643 3455667
Q ss_pred EEEecCCCCCCCCcHHhH-------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhh-----
Q 042733 96 GYCEQNDIHSPHDTLYDF-------------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVA----- 152 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~-------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~----- 152 (531)
+.+||+..+.+..||+|. ..+.....++.|...++.+++.+.+ ||||||.+||.|++
T Consensus 78 aVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v 157 (259)
T COG4559 78 AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPV 157 (259)
T ss_pred hhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCC
Confidence 999999998888999987 1234455788899999988877765 99999999999985
Q ss_pred -CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 153 -NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 153 -~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
++++|+||||||.||...+..++++.++++++|..|+++.||.+. ...+|||+++|.+ ||++..|++.+
T Consensus 158 ~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Grv~a~g~p~~ 227 (259)
T COG4559 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GRVIASGSPQD 227 (259)
T ss_pred CCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-CeEeecCCHHH
Confidence 456999999999999999999999999999999999999999986 5678999999996 99999999865
No 159
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=9.1e-32 Score=277.13 Aligned_cols=195 Identities=15% Similarity=0.257 Sum_probs=157.8
Q ss_pred eEEEEEeEEEEEeCC--CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc-eEEEEEEEcCcccch---hh
Q 042733 26 HYISLNEIVYSVDMP--QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG-YITRNITVSGYPEKQ---ET 90 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~--~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g-~~~G~i~~~g~~~~~---~~ 90 (531)
..|+++||++.|... ...+|+|||+.+.+| |||||||+++|+|..++. ..+|+|.++|.+... ..
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~ 90 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHH
Confidence 468999999998532 236899999888888 999999999999976531 237999999987532 11
Q ss_pred ---hc-ceEEEEecCC--CCCCCCcHHhHH------------HHHHHHHHHHHHhcCCchhh---hcc-----HHHHHHH
Q 042733 91 ---FA-RILGYCEQND--IHSPHDTLYDFT------------HCLYMFIEEGMELVELNPFR---QAL-----FEQRKRL 144 (531)
Q Consensus 91 ---~~-~~igyv~Q~~--~~~~~ltv~e~~------------~~~~~~~~~~l~~l~l~~~~---~~~-----~GerqRv 144 (531)
++ +.++|++|++ .+.|.+|+.++. .+...++.+.++.+++.+.. +.. .||||||
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv 170 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRV 170 (330)
T ss_pred HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHH
Confidence 22 4799999997 578889987741 11234567788888886422 222 3999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+||+||+.+|++||+||||+|||+.++..++++|++++++ |.|+|++|||++ .+.+.+|++++|++ |+++..|+++
T Consensus 171 ~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~-G~ive~g~~~ 247 (330)
T PRK09473 171 MIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA-GRTMEYGNAR 247 (330)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999999999875 999999999987 46678999999986 9999999864
No 160
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-32 Score=267.38 Aligned_cols=189 Identities=15% Similarity=0.177 Sum_probs=152.6
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC-ceEEEEEEEcCcccch---hhhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG-GYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~-g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
.++++|+++.|+ .+.+|+|+|+.+.+| |||||||+|+|+|..++ .+.+|+|.++|.+... ...++
T Consensus 2 ~~~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYG--KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEEC--CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 357888888885 346888888888777 99999999999997531 1347999999986532 23566
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-------------HHHHHHHHHHHhcCCch----hhhc-----cHHHHHHHHHHHHHh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-------------CLYMFIEEGMELVELNP----FRQA-----LFEQRKRLTVAVEFV 151 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-------------~~~~~~~~~l~~l~l~~----~~~~-----~~GerqRv~iA~aL~ 151 (531)
.++|++|++.+++ .|++|+.. ....++++.++.+++.+ ..+. +.|||||++|||+|+
T Consensus 80 ~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 158 (246)
T PRK14269 80 NVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA 158 (246)
T ss_pred hEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 7999999988876 69988721 11234567788888842 2233 339999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
.+|++++|||||+|||+.++..+.+.|+++++ |+|+|++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 159 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 225 (246)
T PRK14269 159 IKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFGES 225 (246)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999864 899999999987 47788999999996 999998875
No 161
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=5.4e-32 Score=282.24 Aligned_cols=187 Identities=17% Similarity=0.210 Sum_probs=156.9
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCc----ccc---hh---hh-cce
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGY----PEK---QE---TF-ARI 94 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~----~~~---~~---~~-~~~ 94 (531)
....++|+|+++.. ..+.+.+|+||||||||+|+|+|..++ .+|+|.++|. +.. .. .. ++.
T Consensus 36 ~~~~l~~vsf~i~~------Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 36 LVVGVANASLDIEE------GEICVLMGLSGSGKSSLLRAVNGLNPV--SRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred CEEEEEeeEEEEcC------CCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 45578888888863 256788889999999999999998653 4689999985 221 11 12 257
Q ss_pred EEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
++|++|++.++|..||.|+.. ....++++.++.+|+.+..++.+ ||||||+|||||+.+|++|+
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILL 187 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILL 187 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999999821 22356788899999988777765 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||||+|||+.++.++.+.|++++++ |+|||++|||++ ++.+++|++++|++ |+++..|+++
T Consensus 188 lDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ 250 (382)
T TIGR03415 188 MDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPE 250 (382)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999999999875 999999999987 57789999999986 9999999874
No 162
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=7e-32 Score=268.74 Aligned_cols=192 Identities=19% Similarity=0.278 Sum_probs=154.2
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc--eEEEEEEEcCcccchhh-hc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG--YITRNITVSGYPEKQET-FA 92 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g--~~~G~i~~~g~~~~~~~-~~ 92 (531)
|..++++|++++| ++.+|+++|+.+.+| |||||||+|+|+|..++. ..+|+|.++|.+..... .+
T Consensus 2 ~~~l~~~~l~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 78 (254)
T PRK10418 2 PQQIELRNIALQA---AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRG 78 (254)
T ss_pred CcEEEEeCeEEEe---ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccccccc
Confidence 3468899999988 246899999888877 999999999999976531 15789999998754322 23
Q ss_pred ceEEEEecCCC--CCCCCcHHhHHH---------HHHHHHHHHHHhcCCch---hhhcc-----HHHHHHHHHHHHHhhC
Q 042733 93 RILGYCEQNDI--HSPHDTLYDFTH---------CLYMFIEEGMELVELNP---FRQAL-----FEQRKRLTVAVEFVAN 153 (531)
Q Consensus 93 ~~igyv~Q~~~--~~~~ltv~e~~~---------~~~~~~~~~l~~l~l~~---~~~~~-----~GerqRv~iA~aL~~~ 153 (531)
+.++|++|++. +.+..|+.++.. .....+.+.++.+++.+ ..++. .||||||+|||||+.+
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~ 158 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCE 158 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcC
Confidence 57999999974 445567765521 11245677889999875 23333 3999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 159 p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 225 (254)
T PRK10418 159 APFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH-GRIVEQGDV 225 (254)
T ss_pred CCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 9999999999999999999999999999764 899999999987 46678999999986 999998875
No 163
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=5.5e-32 Score=266.59 Aligned_cols=168 Identities=26% Similarity=0.327 Sum_probs=136.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEEEEe-cCCCCCCCCcHHhHHH---------
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILGYCE-QNDIHSPHDTLYDFTH--------- 115 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~igyv~-Q~~~~~~~ltv~e~~~--------- 115 (531)
+-+.+||||||||||+|+|+|..++ .+|+|.++|.+... ...++.++|++ |++.+++.+|++|+..
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~ 126 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLP 126 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCC
Confidence 3445555599999999999998653 47899999875321 23456799997 5566778899988721
Q ss_pred --HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCe
Q 042733 116 --CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRT 187 (531)
Q Consensus 116 --~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~t 187 (531)
.....+++.++.+++.+..++.+ |||||++||++|+.+|++++|||||+|||+.+++.+.+.|++++++ |+|
T Consensus 127 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 206 (236)
T cd03267 127 PARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTT 206 (236)
T ss_pred HHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCE
Confidence 11234567788889987766655 9999999999999999999999999999999999999999999765 899
Q ss_pred EEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 188 VVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 188 vi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
||++||+++ ++.+.||++++|.+ |++++.|
T Consensus 207 iiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 207 VLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred EEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999987 56788999999986 8988764
No 164
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-32 Score=271.63 Aligned_cols=191 Identities=21% Similarity=0.283 Sum_probs=157.9
Q ss_pred EEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 27 YISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
.|+++|++++|+.. ...+|+++|+.+.+| |||||||+++|+|..++ .+|+|.++|.+... ...++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i~~~~~~~~~~ 81 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELLTAENVWNLRR 81 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEECCcCCHHHHhc
Confidence 57899999998632 235899999888887 99999999999998653 46899999976532 24567
Q ss_pred eEEEEecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 94 ILGYCEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 94 ~igyv~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
.+||++|++. .++..|+.|+.. ...++++++++.+++.+..++.+ |||||++|||+|+.+|++
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~l 161 (277)
T PRK13642 82 KIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEI 161 (277)
T ss_pred ceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 8999999974 567789988721 11235677889999987766654 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+|||||+|||+.++..+.+.|++++++ |.|||++||+++. +. .+|++++|++ |+++..|+++
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l~~-G~i~~~g~~~ 225 (277)
T PRK13642 162 IILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVMKA-GEIIKEAAPS 225 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999875 9999999999874 44 6999999996 9999998753
No 165
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-32 Score=271.40 Aligned_cols=191 Identities=21% Similarity=0.269 Sum_probs=155.9
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc------eEEEEEEEcCcccc---hh
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG------YITRNITVSGYPEK---QE 89 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g------~~~G~i~~~g~~~~---~~ 89 (531)
|+++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++. ..+|+|.++|.+.. ..
T Consensus 2 l~~~nl~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARR--HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEEC--CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 67888888884 356888888777777 999999999999975431 12799999997653 22
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH---------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH---------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVE 149 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~---------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~a 149 (531)
..++.++|++|++..++..|++|+.. .....+++.++.+++.+..++.+ ||||||+||++
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 159 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARV 159 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 34566899999987666789988721 12235677888999987666554 99999999999
Q ss_pred Hh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 150 FV---------ANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 150 L~---------~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
|+ .+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|
T Consensus 160 l~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~-G~i~~~g 237 (272)
T PRK13547 160 LAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLAD-GAIVAHG 237 (272)
T ss_pred HhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEEec
Confidence 99 599999999999999999999999999999876 899999999987 57778999999986 9999998
Q ss_pred CCC
Q 042733 220 PLG 222 (531)
Q Consensus 220 ~~~ 222 (531)
+++
T Consensus 238 ~~~ 240 (272)
T PRK13547 238 APA 240 (272)
T ss_pred CHH
Confidence 864
No 166
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-32 Score=261.32 Aligned_cols=177 Identities=21% Similarity=0.323 Sum_probs=146.0
Q ss_pred eEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hhhcceEEEEecCCCC
Q 042733 32 EIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ETFARILGYCEQNDIH 104 (531)
Q Consensus 32 ~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~~~~~igyv~Q~~~~ 104 (531)
|+++++.. ++.+.+||||||||||+|+|+|..++ .+|++.++|.+... ...++.++|++|++.+
T Consensus 16 ~vsl~i~~-------e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (214)
T cd03297 16 KIDFDLNE-------EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYAL 86 (214)
T ss_pred CceEEEcc-------eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCCcc
Confidence 66666531 46788899999999999999998653 46899999876421 1245679999999988
Q ss_pred CCCCcHHhHHH---------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 042733 105 SPHDTLYDFTH---------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARA 170 (531)
Q Consensus 105 ~~~ltv~e~~~---------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~ 170 (531)
++.+|+.++.. .....+.+.++.+++.+..++.+ |||||++||++|+.+|++++|||||+|||+.+
T Consensus 87 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 166 (214)
T cd03297 87 FPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRAL 166 (214)
T ss_pred CCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 88999988721 12345677899999987666554 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 171 ATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 171 ~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
++.+.+.|++++++ |+|||++||+++ ++...||++++|++ |+++..|
T Consensus 167 ~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 167 RLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred HHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999875 899999999986 46778999999986 9988765
No 167
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.1e-32 Score=294.29 Aligned_cols=191 Identities=16% Similarity=0.227 Sum_probs=161.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh-hcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-FAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-~~~ 93 (531)
.|+++|++++|+ ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... .. .++
T Consensus 11 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 11 LLCARSISKQYS--GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPCARLTPAKAHQL 86 (510)
T ss_pred eEEEEeEEEEeC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHhC
Confidence 588999999885 356889888887777 99999999999998653 46899999976432 12 234
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
.+||++|++.+++.+||.|+.. ...+++++.++.+++.+..++.+ ||||||+||++|+.+|++|+|||
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDE 166 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDE 166 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 6999999999999999999721 22456788899999987666655 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 162 PISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||++++|++ |++++.|++++
T Consensus 167 Pt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~~ 226 (510)
T PRK15439 167 PTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALSGKTAD 226 (510)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecChHH
Confidence 99999999999999999999888999999999987 46788999999986 99999998753
No 168
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-32 Score=270.07 Aligned_cols=192 Identities=18% Similarity=0.206 Sum_probs=153.9
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccc-----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEK----- 87 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~----- 87 (531)
+..|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+. .+.+|++.++|.+..
T Consensus 11 ~~~l~i~nl~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 11 NIIISLQNVTISYG--TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CceEEEEeEEEEEC--CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 45799999999995 357999999888877 99999999999997541 125799999997642
Q ss_pred hhhhcceEEEEecCCCCCCCCcHHhHHH----------HHHHHHHHHHHhcCCc----hhhhcc-----HHHHHHHHHHH
Q 042733 88 QETFARILGYCEQNDIHSPHDTLYDFTH----------CLYMFIEEGMELVELN----PFRQAL-----FEQRKRLTVAV 148 (531)
Q Consensus 88 ~~~~~~~igyv~Q~~~~~~~ltv~e~~~----------~~~~~~~~~l~~l~l~----~~~~~~-----~GerqRv~iA~ 148 (531)
...+++.++|++|++.+++ .|++|+.. ...+.+++.++.+++. +..++. .|||||++|||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~lar 167 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIAR 167 (269)
T ss_pred HHHHhhceEEEccCCccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHH
Confidence 2345667999999988887 49998722 1123455667777653 333433 39999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc----------Cceeeec
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ----------VGQEISV 218 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~----------~G~~v~~ 218 (531)
+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.||++++|++ .|++++.
T Consensus 168 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~ 245 (269)
T PRK14259 168 TIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEF 245 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccccccccccccceEEEe
Confidence 99999999999999999999999999999999854 789999999987 57789999999984 2567888
Q ss_pred CCC
Q 042733 219 GPL 221 (531)
Q Consensus 219 G~~ 221 (531)
|++
T Consensus 246 ~~~ 248 (269)
T PRK14259 246 NET 248 (269)
T ss_pred CCH
Confidence 875
No 169
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=7.8e-32 Score=280.60 Aligned_cols=172 Identities=20% Similarity=0.343 Sum_probs=145.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hhhcceEEEEecCCCCCCCCcHHhHHH----
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ETFARILGYCEQNDIHSPHDTLYDFTH---- 115 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~~~~~igyv~Q~~~~~~~ltv~e~~~---- 115 (531)
++.+.+||||||||||||+|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+||+|+..
T Consensus 24 ei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 101 (354)
T TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMK 101 (354)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhh
Confidence 45566667799999999999998653 46899999976431 134567999999999999999999832
Q ss_pred -----HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 042733 116 -----CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM- 184 (531)
Q Consensus 116 -----~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~- 184 (531)
....++++.++.+++.+..++.+ ||||||+|||||+.+|++|+|||||+|||+.+++.+.+.|++++++
T Consensus 102 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~ 181 (354)
T TIGR02142 102 RARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181 (354)
T ss_pred ccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence 12345788899999988777655 9999999999999999999999999999999999999999999875
Q ss_pred CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 185 GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 185 g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+|+|++||+++ ++...+|++++|++ |+++..|+++
T Consensus 182 g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 217 (354)
T TIGR02142 182 GIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPIA 217 (354)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCHH
Confidence 899999999987 57788999999986 9999998763
No 170
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-31 Score=264.11 Aligned_cols=186 Identities=23% Similarity=0.304 Sum_probs=151.9
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEEE
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGYC 98 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igyv 98 (531)
+++|+++.|+. ++|+|+|+.+.|| |||||||+++|+|..++ ..|++.++|.+... ...++.++|+
T Consensus 2 ~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p--~~G~v~i~g~~~~~~~~~~~~i~~~ 76 (235)
T cd03299 2 KVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDITNLPPEKRDISYV 76 (235)
T ss_pred eeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcCcCChhHcCEEEE
Confidence 46667766642 2577777666665 99999999999997653 46999999976532 1235679999
Q ss_pred ecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 99 EQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEP 162 (531)
+|++.+++..|+.|+.. .....+.+.++.+++.+..++.+ |||||++||++++.+|++++||||
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 156 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEP 156 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCC
Confidence 99998898999988721 12234567888999987766655 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 163 ISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|||+.++..+.+.|++++++ |+|+|++||++. ++.+.||++++|++ |+++..|+.
T Consensus 157 t~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 157 FSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 9999999999999999998765 999999999986 46778999999986 999998875
No 171
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-31 Score=265.91 Aligned_cols=191 Identities=18% Similarity=0.166 Sum_probs=153.6
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccch-----
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEKQ----- 88 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~~----- 88 (531)
+.++++|+++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ ...+|+|.++|.+...
T Consensus 3 ~~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 3 IKMESKNLNLWYG--EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred cEEEEEEeEEEEC--CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4578899998885 356889888888877 99999999999997532 1246999999976531
Q ss_pred hhhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCc----hhhhcc-----HHHHHHHHHH
Q 042733 89 ETFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELN----PFRQAL-----FEQRKRLTVA 147 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~----~~~~~~-----~GerqRv~iA 147 (531)
...++.++|++|++.+++ .|++|+.. ....++++.++.+++. +..++. .|||||++||
T Consensus 81 ~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 159 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIA 159 (251)
T ss_pred HHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 234667999999988877 89998721 1123456678888763 223333 3999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++ |+++..|+++
T Consensus 160 ral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 231 (251)
T PRK14270 160 RTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLM-GDLIEFNKTE 231 (251)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEEC-CeEEEeCCHH
Confidence 999999999999999999999999999999999876 689999999986 57788999999986 9999998753
No 172
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-31 Score=265.73 Aligned_cols=189 Identities=21% Similarity=0.213 Sum_probs=149.2
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--C-ceEEEEEEEcCcccc-----hh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--G-GYITRNITVSGYPEK-----QE 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~-g~~~G~i~~~g~~~~-----~~ 89 (531)
.++++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..+ + ...+|+|.++|.+.. ..
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYN--KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEEC--CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 467888888874 346788888777776 9999999999999632 2 124689999997642 12
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhcc-----HHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQAL-----FEQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~iA~ 148 (531)
.+++.++|++|++.+++ .|+.|+.. .....+.+.++.+++.+ ..++. .|||||++||+
T Consensus 83 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 161 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIAR 161 (252)
T ss_pred hhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHH
Confidence 34667999999988776 89998721 11233455677777632 22333 39999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 231 (252)
T PRK14239 162 VLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLD-GDLIEYNDT 231 (252)
T ss_pred HHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999865 689999999987 57788999999996 999999875
No 173
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-31 Score=268.06 Aligned_cols=206 Identities=17% Similarity=0.239 Sum_probs=159.8
Q ss_pred CchhhhhhhcccCCCccccccceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--C
Q 042733 4 MTEAAIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--G 72 (531)
Q Consensus 4 m~~~~i~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~ 72 (531)
|-+.-+++++....+ ...++++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..+ +
T Consensus 4 ~~~~~~~~~~~~~~~------~~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 75 (268)
T PRK14248 4 MVREKIEIAPFPEAK------EHILEVKDLSIYYG--EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIP 75 (268)
T ss_pred HHhhHhhcccCCCCC------CceEEEEEEEEEeC--CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccC
Confidence 444445555544322 23589999999995 467999999888887 9999999999999632 1
Q ss_pred -ceEEEEEEEcCcccch-----hhhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCc---
Q 042733 73 -GYITRNITVSGYPEKQ-----ETFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELN--- 131 (531)
Q Consensus 73 -g~~~G~i~~~g~~~~~-----~~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~--- 131 (531)
...+|+|.++|.+... ...++.++|++|++.+++. |+.|+.. .....+.+.++.+++.
T Consensus 76 ~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 154 (268)
T PRK14248 76 SARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV 154 (268)
T ss_pred CCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch
Confidence 1246899999976531 2346679999999888774 9888621 1123355667777763
Q ss_pred -hhhhcc-----HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCe
Q 042733 132 -PFRQAL-----FEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 132 -~~~~~~-----~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~ 205 (531)
+..++. .|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||+
T Consensus 155 ~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~ 232 (268)
T PRK14248 155 KDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDR 232 (268)
T ss_pred HHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCE
Confidence 223333 3999999999999999999999999999999999999999999965 689999999986 47788999
Q ss_pred EEEEccCceeeecCCC
Q 042733 206 LFLLKQVGQEISVGPL 221 (531)
Q Consensus 206 v~lL~~~G~~v~~G~~ 221 (531)
+++|++ |++++.|++
T Consensus 233 v~~l~~-G~i~~~~~~ 247 (268)
T PRK14248 233 TAFFLN-GDLVEYDQT 247 (268)
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999986 999999875
No 174
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=9.5e-32 Score=292.83 Aligned_cols=192 Identities=21% Similarity=0.277 Sum_probs=157.3
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~ 93 (531)
.|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++
T Consensus 4 ~i~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~ 79 (501)
T PRK10762 4 LLQLKGIDKAFP--GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVTFNGPKSSQEA 79 (501)
T ss_pred eEEEeeeEEEeC--CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHHHhC
Confidence 367777777774 345777777666655 99999999999998653 46899999976421 11346
Q ss_pred eEEEEecCCCCCCCCcHHhHHH---------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH---------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVAN 153 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~---------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~ 153 (531)
.++|++|++.+++.+||+|+.. ....++++.++.+++.+..++.+ ||||||+||+||+.+
T Consensus 80 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (501)
T PRK10762 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFE 159 (501)
T ss_pred CEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcC
Confidence 7999999998899999998621 11245678899999987666554 999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPS 224 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~ 224 (531)
|++|+|||||+|||+.++..+.+.|++++++|.|||++|||++ ++...||++++|++ |+++..|++++.
T Consensus 160 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~ 228 (501)
T PRK10762 160 SKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAEREVADL 228 (501)
T ss_pred CCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEecCcCcC
Confidence 9999999999999999999999999999877999999999987 57788999999986 999999987653
No 175
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-31 Score=269.56 Aligned_cols=191 Identities=22% Similarity=0.336 Sum_probs=152.6
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGY 97 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igy 97 (531)
.++++|++++|+ +++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+......++.++|
T Consensus 6 ~l~~~~l~~~~~-~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~i~~ 82 (272)
T PRK15056 6 GIVVNDVTVTWR-NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQPTRQALQKNLVAY 82 (272)
T ss_pred eEEEEeEEEEec-CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEhHHhhccceEEE
Confidence 578888888885 2346888888877766 99999999999998653 47999999986543222346999
Q ss_pred EecCCCCC--CCCcHHhHH---------------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCC
Q 042733 98 CEQNDIHS--PHDTLYDFT---------------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPS 155 (531)
Q Consensus 98 v~Q~~~~~--~~ltv~e~~---------------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ 155 (531)
++|++.+. ...+++++. ......+++.++.+++.+..++.+ |||||++||++|+.+|+
T Consensus 83 v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ 162 (272)
T PRK15056 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQ 162 (272)
T ss_pred eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 99986542 223455431 112345677889999987766655 99999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 156 IISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
+++|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++.+.||+++++ + |+++..|++++
T Consensus 163 llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g~~~~ 227 (272)
T PRK15056 163 VILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASGPTET 227 (272)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHh
Confidence 99999999999999999999999999877999999999986 577889999777 5 89999998753
No 176
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=9.9e-32 Score=268.24 Aligned_cols=189 Identities=21% Similarity=0.259 Sum_probs=150.1
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcc-----cch---h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYP-----EKQ---E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~-----~~~---~ 89 (531)
.++++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+ ... .
T Consensus 6 ~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~i~~~~~~ 81 (258)
T PRK11701 6 LLSVRGLTKLYG--PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDGQLRDLYALSEA 81 (258)
T ss_pred eEEEeeeEEEcC--CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCccccccccccCCHH
Confidence 467778887774 346777777777766 99999999999997653 46899999976 321 1
Q ss_pred h----hcceEEEEecCCC--CCCCCcHHhHH------------HHHHHHHHHHHHhcCCch-hhhccH-----HHHHHHH
Q 042733 90 T----FARILGYCEQNDI--HSPHDTLYDFT------------HCLYMFIEEGMELVELNP-FRQALF-----EQRKRLT 145 (531)
Q Consensus 90 ~----~~~~igyv~Q~~~--~~~~ltv~e~~------------~~~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~ 145 (531)
. .++.++|++|++. +.+.+|+.++. ......+.+.++.+++.+ ..++.+ |||||++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~ 161 (258)
T PRK11701 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQ 161 (258)
T ss_pred HHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHH
Confidence 1 2456999999973 56667776541 112345677889999863 444443 9999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+.||++++|++ |++++.|++
T Consensus 162 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 162 IARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQ-GRVVESGLT 236 (258)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999998765 899999999987 46678999999986 999999875
No 177
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.98 E-value=9.5e-32 Score=263.88 Aligned_cols=179 Identities=18% Similarity=0.244 Sum_probs=148.5
Q ss_pred EeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcH
Q 042733 31 NEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTL 110 (531)
Q Consensus 31 ~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv 110 (531)
+|+++++.. .++.+.+||||||||||+|+|+|..++ .+|+|.++|.+..... ...+|++|++.+++.+|+
T Consensus 2 ~~is~~i~~------Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv 71 (230)
T TIGR01184 2 KGVNLTIQQ------GEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTV 71 (230)
T ss_pred CceeEEEcC------CCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCC--hhheEEecCcccCCCCCH
Confidence 567777753 357889999999999999999998653 4689999997653221 124899999999999999
Q ss_pred HhHHHH-------------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 042733 111 YDFTHC-------------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAAT 172 (531)
Q Consensus 111 ~e~~~~-------------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~ 172 (531)
.|+... ....+++.++.+++.+..++.+ |||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 72 ~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 72 RENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 987211 1234677889999987666655 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 173 TVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 173 ~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
.+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 999999998865 899999999987 57788999999986 999988764
No 178
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2e-31 Score=265.07 Aligned_cols=190 Identities=19% Similarity=0.228 Sum_probs=150.1
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc---eEEEEEEEcCcccch-----h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG---YITRNITVSGYPEKQ-----E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g---~~~G~i~~~g~~~~~-----~ 89 (531)
.++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++. ..+|+|.++|.+... .
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYG--DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEEC--CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 578888888885 356888888877777 999999999999975421 136999999976531 2
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCc----hhhhcc-----HHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELN----PFRQAL-----FEQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~----~~~~~~-----~GerqRv~iA~ 148 (531)
.+++.++|++|++.+++..|+.|+... ..+.+++.++.+++. +..++. .|||||++||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 161 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIAR 161 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHH
Confidence 346679999999999988999887321 112233444555542 223333 39999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.||++++|++ |++++.|++
T Consensus 162 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 231 (252)
T PRK14272 162 ALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLV-GDLVEHGPT 231 (252)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999864 799999999987 57778999999986 999999875
No 179
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.98 E-value=8.5e-32 Score=293.90 Aligned_cols=191 Identities=22% Similarity=0.257 Sum_probs=156.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---h-hhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---E-TFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~-~~~~ 93 (531)
.|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... . ..++
T Consensus 5 ~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~ 80 (510)
T PRK09700 5 YISMAGIGKSFG--PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINYNKLDHKLAAQL 80 (510)
T ss_pred eEEEeeeEEEcC--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEECCCCCHHHHHHC
Confidence 467777777774 345677777666655 99999999999998653 46899999976532 1 1345
Q ss_pred eEEEEecCCCCCCCCcHHhHHH------------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHH
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH------------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEF 150 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~------------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL 150 (531)
.++|++|++.+++.+||+|+.. ....++++.++.+|+.+..++.+ ||||||+||++|
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al 160 (510)
T PRK09700 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTL 160 (510)
T ss_pred CeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHH
Confidence 6999999998889999988621 11245677899999987666655 999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+...||++++|++ |++++.|++++
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~ 231 (510)
T PRK09700 161 MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GSSVCSGMVSD 231 (510)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEeeecchhh
Confidence 9999999999999999999999999999999888999999999987 56778999999986 99999998764
No 180
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.7e-31 Score=266.72 Aligned_cols=189 Identities=19% Similarity=0.223 Sum_probs=152.2
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--Cc-eEEEEEEEcCcccc-----hh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--GG-YITRNITVSGYPEK-----QE 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~g-~~~G~i~~~g~~~~-----~~ 89 (531)
.|+++|+++.|+ .+.+|+++|+.+.+| |||||||+|+|+|..+ +. ..+|++.++|.+.. ..
T Consensus 12 ~l~i~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYG--QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEEC--CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 578999999885 356899999888877 9999999999999753 11 14799999998653 12
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhcc-----HHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQAL-----FEQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~iA~ 148 (531)
..++.+||++|++.+++. |++|+.. .....+++.++.+++.+ ..++. .|||||++||+
T Consensus 90 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lar 168 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIAR 168 (259)
T ss_pred HHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence 346779999999888775 9988721 11223556677877743 22332 39999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.||++++|++ |+++..|++
T Consensus 169 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 238 (259)
T PRK14274 169 ALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GELVECNDT 238 (259)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999865 789999999987 57788999999986 999999875
No 181
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.2e-31 Score=264.49 Aligned_cols=189 Identities=19% Similarity=0.239 Sum_probs=151.3
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--C-ceEEEEEEEcCcccch-----h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--G-GYITRNITVSGYPEKQ-----E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~-g~~~G~i~~~g~~~~~-----~ 89 (531)
.|+++|+++.|+ ++.+++|+|+.+.+| |||||||+|+|+|..+ + ...+|+|.++|.+... .
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 3 KISVKDLDLFYG--DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred eEEEEEEEEEEC--CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 468889998885 346888888888777 9999999999999643 1 1247999999976532 2
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCc----hhhhcc-----HHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELN----PFRQAL-----FEQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~----~~~~~~-----~GerqRv~iA~ 148 (531)
..++.++|++|++.+++ .|+.++.. ...+.+++.++.+++. +..++. .|||||++|||
T Consensus 81 ~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 159 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred HHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 34667999999988777 89988721 1233456667777763 222332 39999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.||++++|++ |+++..|++
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 229 (250)
T PRK14240 160 ALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLN-GEIVEFGDT 229 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999854 789999999986 57788999999996 999998874
No 182
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.98 E-value=1.7e-31 Score=268.07 Aligned_cols=193 Identities=21% Similarity=0.314 Sum_probs=155.1
Q ss_pred EEEEEeEEEEEeC-------CCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--
Q 042733 27 YISLNEIVYSVDM-------PQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-- 88 (531)
Q Consensus 27 ~l~~~~ls~~~~~-------~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-- 88 (531)
.|+++||++.|+. .++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~~g~~~~~~~ 80 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPLAKLN 80 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccccC
Confidence 3678888888752 1346888888877776 99999999999997653 47899999976432
Q ss_pred ----hhhcceEEEEecCC--CCCCCCcHHhHHH------------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHH
Q 042733 89 ----ETFARILGYCEQND--IHSPHDTLYDFTH------------CLYMFIEEGMELVELN-PFRQALF-----EQRKRL 144 (531)
Q Consensus 89 ----~~~~~~igyv~Q~~--~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv 144 (531)
...++.++|++|++ .+.+..|+.++.. .....+++.++.+++. ...++.+ |||||+
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl 160 (268)
T PRK10419 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRV 160 (268)
T ss_pred hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHH
Confidence 12466799999997 3566788877621 1223577889999986 4545543 999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|++||+++ ++.+.||++++|++ |++++.|++++
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~~ 238 (268)
T PRK10419 161 CLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-GQIVETQPVGD 238 (268)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-CEEeeeCChhh
Confidence 9999999999999999999999999999999999999875 899999999987 56778999999986 99999998653
No 183
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=6.2e-32 Score=255.96 Aligned_cols=191 Identities=20% Similarity=0.247 Sum_probs=156.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~ 93 (531)
.++++||+..|+ +.++|++||+.+++| |||||||||+|+|..+. .+|+|.++|.++.. ...++
T Consensus 3 mL~v~~l~~~YG--~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit~~p~~~r~r~ 78 (237)
T COG0410 3 MLEVENLSAGYG--KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDITGLPPHERARL 78 (237)
T ss_pred ceeEEeEeeccc--ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecCCCCHHHHHhC
Confidence 468888888885 467888888877766 99999999999998763 36999999987643 34567
Q ss_pred eEEEEecCCCCCCCCcHHhHHH---------HHHH-HHHHHHHhcC-CchhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH---------CLYM-FIEEGMELVE-LNPFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~---------~~~~-~~~~~l~~l~-l~~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
.++||||....||.+||+||-. .... ..+++.+.+- |.+.+++.. ||||.++|||||+.+|++|
T Consensus 79 Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklL 158 (237)
T COG0410 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLL 158 (237)
T ss_pred CeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEE
Confidence 8999999999999999999921 1111 1566666653 444455444 8999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
+|||||.||-|.-.++|.+.+++++++ |.||+++.++.. ...+.+||.++|.. |++++.|+.++
T Consensus 159 LLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~~G~~~e 223 (237)
T COG0410 159 LLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVLSGTAAE 223 (237)
T ss_pred EecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEEecCHHH
Confidence 999999999999999999999999976 789999999876 46788999999986 99999998753
No 184
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=3.7e-31 Score=266.59 Aligned_cols=192 Identities=20% Similarity=0.219 Sum_probs=156.2
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccch----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEKQ---- 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~~---- 88 (531)
...|+++|++++|+ .+.+|+|+|+.+.+| |||||||+|+|+|..++ ...+|+|.++|.+...
T Consensus 19 ~~~l~i~nl~~~~~--~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 19 APAMAAVNLTLGFA--GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred CcEEEEeeEEEEEC--CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 34689999999996 467999999998887 99999999999997542 1357999999976431
Q ss_pred hhhcceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCchh----hhc-----cHHHHHHHHHH
Q 042733 89 ETFARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELNPF----RQA-----LFEQRKRLTVA 147 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~~~----~~~-----~~GerqRv~iA 147 (531)
..+++.++|++|++.+++ .|++++... ....+.+.++.+++.+. .++ +.|||||++||
T Consensus 97 ~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA 175 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA 175 (276)
T ss_pred HHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence 235678999999988877 799986211 11234566788887542 222 23999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+|+.+|++++|||||+|||+.+++.+.+.|+++++ ++|||++||+++ ++.+.+|++++|++ |+++..|+++
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i~~~g~~~ 247 (276)
T PRK14271 176 RTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRLVEEGPTE 247 (276)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999999999999876 589999999987 57788999999996 9999998753
No 185
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.98 E-value=1.6e-31 Score=265.34 Aligned_cols=193 Identities=18% Similarity=0.297 Sum_probs=159.1
Q ss_pred EEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCC-C-c-eEEEEEEEcCccc---chh-
Q 042733 28 ISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP-G-G-YITRNITVSGYPE---KQE- 89 (531)
Q Consensus 28 l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~-~-g-~~~G~i~~~g~~~---~~~- 89 (531)
|+++||+.+|.... ..+++|||+.+++| ||||||+.++|.|..+ + + ..+|+|.++|.+. ++.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899998887543 36899999999988 9999999999999765 2 3 4578999999853 222
Q ss_pred --h-hcceEEEEecCC--CCCCCCcHHhHH-------------HHHHHHHHHHHHhcCCchhh---hccH-----HHHHH
Q 042733 90 --T-FARILGYCEQND--IHSPHDTLYDFT-------------HCLYMFIEEGMELVELNPFR---QALF-----EQRKR 143 (531)
Q Consensus 90 --~-~~~~igyv~Q~~--~~~~~ltv~e~~-------------~~~~~~~~~~l~~l~l~~~~---~~~~-----GerqR 143 (531)
. ..+.|++++|++ .+.|.+|+.+.. ++..+++.+.++.+|+.+-. +... |||||
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQR 161 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQR 161 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHH
Confidence 2 346899999996 467888886640 11234677889999997642 3333 99999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 144 v~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|.||.||+.+|++||.||||++||...+.+++++|+++++ .|.++|++|||+.. +.+.||||.+|.. |+++..|+.+
T Consensus 162 V~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~VMYa-G~iVE~g~~~ 239 (316)
T COG0444 162 VMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYA-GRIVEEGPVE 239 (316)
T ss_pred HHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEEEEEC-cEEEEeCCHH
Confidence 9999999999999999999999999999999999999997 59999999999984 7889999999996 9999999975
No 186
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.98 E-value=2e-31 Score=259.72 Aligned_cols=183 Identities=21% Similarity=0.275 Sum_probs=150.5
Q ss_pred EEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hh
Q 042733 28 ISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ET 90 (531)
Q Consensus 28 l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~ 90 (531)
++++|+++.|+.+. +.+|+++|+.+.+| |||||||+++|+|..++ .+|+|.++|.+... ..
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~ 79 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV--QEGSLKVLGQELYGASEKELVQ 79 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEhHhcCHhHHHH
Confidence 56788888875321 45888888777776 99999999999997653 47999999986532 13
Q ss_pred hcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhC
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVAN 153 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~ 153 (531)
.++.++|++|++.+++..|+.|+.. .....+++.++.+++.+..++.+ |||||++||++|+.+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~ 159 (220)
T TIGR02982 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHR 159 (220)
T ss_pred HHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 4578999999998888899988621 11235778899999987766655 999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
|++++|||||+|||+.++..+.+.|+++++ +|+|||++||+++ +.+.||++++|++ |++
T Consensus 160 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 160 PKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 999999999999999999999999999986 4899999999985 4578999999986 775
No 187
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.8e-31 Score=263.75 Aligned_cols=189 Identities=21% Similarity=0.264 Sum_probs=150.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccch-----h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEKQ-----E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~~-----~ 89 (531)
.|+++|+++.|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ ...+|++.++|.+... .
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYG--EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeC--CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 467888888874 346788888777766 99999999999997542 1257999999976531 2
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhccH-----HHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQALF-----EQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~~~-----GerqRv~iA~ 148 (531)
..++.++|++|++.+++ .|++|+.. .....+++.++.+++.+ ..++.+ |||||++||+
T Consensus 81 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~ 159 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIAR 159 (250)
T ss_pred HhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHH
Confidence 34667999999988877 89988721 11223556677777743 233333 9999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.+|++++|++ |+++..|++
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14262 160 ALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GELIEYGPT 229 (250)
T ss_pred HHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999999865 789999999987 47788999999996 999998875
No 188
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.98 E-value=8.1e-32 Score=322.80 Aligned_cols=192 Identities=23% Similarity=0.345 Sum_probs=166.5
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcce
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARI 94 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ 94 (531)
..|+++||+++|+.+++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i~~~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSILTNISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEECcchHHHHhhh
Confidence 458999999999643457999999887776 99999999999998653 47999999987532 235677
Q ss_pred EEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 95 LGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
+||++|++.+++.+|++|+. +..++.+++.++.+++.+.+++.+ ||||||+||+||+.+|++++
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLL 2093 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVL 2093 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999972 112345678899999998887776 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|||||+|||+.+++.+++.|++++++|+|||++||+++ ++..+|||+++|.+ |++++.|++
T Consensus 2094 LDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs~ 2154 (2272)
T TIGR01257 2094 LDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGTI 2154 (2272)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999888999999999987 67889999999996 999999986
No 189
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=1.2e-31 Score=251.81 Aligned_cols=162 Identities=24% Similarity=0.340 Sum_probs=136.9
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILG 96 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ig 96 (531)
++++|++++|+ .+.+|+++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ...++.++
T Consensus 1 l~~~~l~~~~~--~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYG--KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIKKEPEEVKRRIG 76 (173)
T ss_pred CEEEEEEEEEC--CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcccchHhhhccEE
Confidence 36788888875 246888888888777 99999999999997653 46899999976532 23567799
Q ss_pred EEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 042733 97 YCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR 176 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~ 176 (531)
|++|++.+++..|+.|+.. .+.|||||++||++|+.+|++++|||||+|||+.++..+.+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~--------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~ 136 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK--------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWE 136 (173)
T ss_pred EEecCCccccCCcHHHHhh--------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 9999998888889987531 45599999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 177 MVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 177 ~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
.|++++++|.|+|++||+++ ++.+.+|++++|++ |++
T Consensus 137 ~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~-g~i 173 (173)
T cd03230 137 LLRELKKEGKTILLSSHILE-EAERLCDRVAILNN-GRI 173 (173)
T ss_pred HHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeC-CCC
Confidence 99999877899999999987 56778999999986 753
No 190
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.98 E-value=3.4e-31 Score=266.44 Aligned_cols=190 Identities=18% Similarity=0.196 Sum_probs=154.9
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccch-----
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEKQ----- 88 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~~----- 88 (531)
..++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+. ...+|++.++|.+...
T Consensus 24 ~~l~~~nl~~~~~--~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 24 TALEVRNLNLFYG--DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred cEEEEEEEEEEEC--CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 3689999999995 357999999998887 99999999999997542 1257999999976531
Q ss_pred hhhcceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCch----hhhcc-----HHHHHHHHHH
Q 042733 89 ETFARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELNP----FRQAL-----FEQRKRLTVA 147 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~iA 147 (531)
..+++.++|++|++.+++. |+.|+... ....+++.++.+++.+ ..++. .|||||++||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 180 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIA 180 (272)
T ss_pred HHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHH
Confidence 2346789999999888875 99887211 1234566777777742 22333 3999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 181 ral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 251 (272)
T PRK14236 181 RAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYM-GKLVEYGDT 251 (272)
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999976 789999999986 46788999999986 999998875
No 191
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.2e-31 Score=264.31 Aligned_cols=189 Identities=20% Similarity=0.194 Sum_probs=148.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc---eEEEEEEEcCcccc----hhh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG---YITRNITVSGYPEK----QET 90 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g---~~~G~i~~~g~~~~----~~~ 90 (531)
.++++|+++.|+ ++.+|+++|+.+.+| |||||||+|+|+|..++. ..+|++.++|.+.. ...
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYG--ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEEC--CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 467777777774 345777777776665 999999999999975421 24799999997642 124
Q ss_pred hcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhcc-----HHHHHHHHHHHH
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQAL-----FEQRKRLTVAVE 149 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~iA~a 149 (531)
.++.++|++|++.+++ .|+.|+.. ...+.+.+.++.+++.+ ..++. .||||||+|||+
T Consensus 81 ~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 159 (249)
T PRK14253 81 LRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIART 159 (249)
T ss_pred HHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHH
Confidence 5677999999988887 79988721 11223455666777632 22332 399999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 160 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 228 (249)
T PRK14253 160 IAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GELVEHDDT 228 (249)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999999999976 589999999987 57788999999996 999998875
No 192
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.98 E-value=1.8e-31 Score=259.12 Aligned_cols=180 Identities=22% Similarity=0.280 Sum_probs=151.3
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..++++|++++|+ ++.+++++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+......++.++
T Consensus 10 ~~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i~~~~~~~~i~ 85 (214)
T PRK13543 10 PLLAAHALAFSRN--EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTATRGDRSRFMA 85 (214)
T ss_pred ceEEEeeEEEecC--CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEccchhhhhceE
Confidence 4588999999885 356899999888877 99999999999998653 4699999998654333445699
Q ss_pred EEecCCCCCCCCcHHhHHHH--------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCC
Q 042733 97 YCEQNDIHSPHDTLYDFTHC--------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPI 163 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~~--------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPt 163 (531)
|++|++.+++.+|+.|+... ....+++.++.+++.+..++.+ |||||++||++++.+|++++|||||
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPY 165 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999888888899987311 1234567888899877666655 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 164 SGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 164 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
+|||+.+++.+.+.|++++++|.|+|++||+++ ++.+.||++++++
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 166 ANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999888999999999987 5788999999886
No 193
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.98 E-value=5.8e-32 Score=300.15 Aligned_cols=196 Identities=24% Similarity=0.317 Sum_probs=159.0
Q ss_pred cccccceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---
Q 042733 20 VLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK--- 87 (531)
Q Consensus 20 ~~~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~--- 87 (531)
..+.-.-.++++|++|+|+..+..+|+|+|+.++|| |||||||+|+|+|+.++ ..|+|.+||.+..
T Consensus 464 ~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p--~~G~I~~dg~dl~~i~ 541 (709)
T COG2274 464 HLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP--QQGRILLDGVDLNDID 541 (709)
T ss_pred cccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEeHHhcC
Confidence 333445679999999999866567999999999999 99999999999998663 5799999999864
Q ss_pred hhhhcceEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHH
Q 042733 88 QETFARILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTV 146 (531)
Q Consensus 88 ~~~~~~~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~i 146 (531)
...+|+.+|||+|++.++ +-|++|+-. ...+.+.++++..|..+... .+.|||||++|
T Consensus 542 ~~~lR~~ig~V~Q~~~Lf-~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlal 620 (709)
T COG2274 542 LASLRRQVGYVLQDPFLF-SGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLAL 620 (709)
T ss_pred HHHHHhheeEEcccchhh-cCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHH
Confidence 356899999999998765 578998821 11122333444444333222 23389999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||||+++|+||+||||||+||+.+.+.+.+.|+++. +|+|+|+++|.++ ..+.|||+++|++ |+++..|+.+
T Consensus 621 ARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl~~-Gkiv~~gs~~ 692 (709)
T COG2274 621 ARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVLDQ-GKIVEQGSHE 692 (709)
T ss_pred HHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEccC-CceeccCCHH
Confidence 999999999999999999999999999999999985 4799999999986 5788999999986 9999999863
No 194
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.98 E-value=1.4e-31 Score=257.88 Aligned_cols=173 Identities=22% Similarity=0.284 Sum_probs=139.3
Q ss_pred EeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---h----hhhcce
Q 042733 31 NEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---Q----ETFARI 94 (531)
Q Consensus 31 ~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~----~~~~~~ 94 (531)
+|+++.|+ ++++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. . ...++.
T Consensus 2 ~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 2 KNISKKFG--DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF--DSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred cceEEEEC--CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccchhhHHHHHHhC
Confidence 45666663 235666666666555 99999999999998653 4689999997632 1 124567
Q ss_pred EEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
++|++|++.+++..|++|+.. ...+.+++.++.+++.+..++.+ |||||++||++|+.+|++|+
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~lll 157 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLIL 157 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999999999888999998721 12345678899999987766665 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL 209 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL 209 (531)
|||||+|||+.++..+.+.|++++++|.|+|++||++. ..+.||++++|
T Consensus 158 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 158 ADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred EeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999999877999999999986 34679999864
No 195
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.98 E-value=1.3e-31 Score=264.02 Aligned_cols=187 Identities=21% Similarity=0.299 Sum_probs=143.1
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~i 95 (531)
++++|+++.|+...+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++.+
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~i 78 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLALADPAWLRRQV 78 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehHhcCHHHHhhcE
Confidence 3678888888533356888888777776 99999999999998653 46899999976432 2356779
Q ss_pred EEEecCCCCCCCCcHHhHHHH-----HHHHHHHH---------HHhc--CCchhh-----hccHHHHHHHHHHHHHhhCC
Q 042733 96 GYCEQNDIHSPHDTLYDFTHC-----LYMFIEEG---------MELV--ELNPFR-----QALFEQRKRLTVAVEFVANP 154 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~~-----~~~~~~~~---------l~~l--~l~~~~-----~~~~GerqRv~iA~aL~~~p 154 (531)
+|++|++.+++ .||.|+... ....+.+. ++.+ ++.... +.+.||||||+|||+|+.+|
T Consensus 79 ~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p 157 (237)
T cd03252 79 GVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNP 157 (237)
T ss_pred EEEcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCC
Confidence 99999987664 699887211 01112222 2222 222222 22339999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++++|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++ ..||++++|++ |++++.|++
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 220 (237)
T cd03252 158 RILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS-TV-KNADRIIVMEK-GRIVEQGSH 220 (237)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999999999999986 4899999999987 35 46999999996 999999875
No 196
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=3.2e-31 Score=264.76 Aligned_cols=191 Identities=18% Similarity=0.212 Sum_probs=154.3
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc-e--EEEEEEEcCcccch-----h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG-Y--ITRNITVSGYPEKQ-----E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g-~--~~G~i~~~g~~~~~-----~ 89 (531)
.++++|+++.|+ .+.+|+|+|+.+.+| |||||||+|+|+|..+.. . .+|++.++|.+... .
T Consensus 7 ~l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 7 AIKVKDLSFYYN--TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred eEEEEEEEEEEC--CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 578999999985 356899999988887 999999999999975421 1 47999999976421 2
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCc----hhhhcc-----HHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELN----PFRQAL-----FEQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~----~~~~~~-----~GerqRv~iA~ 148 (531)
..++.++|++|++.+++ .|++|+.. .....+++.++.+++. +..++. .|||||++|||
T Consensus 85 ~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 163 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIAR 163 (259)
T ss_pred hhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 34567999999988887 89998721 1123456677777763 233333 39999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc----CceeeecCCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ----VGQEISVGPLG 222 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~----~G~~v~~G~~~ 222 (531)
||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++ +|+++..|+++
T Consensus 164 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~ 239 (259)
T PRK14260 164 ALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVTT 239 (259)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCHH
Confidence 99999999999999999999999999999999865 689999999987 57789999999972 38999999863
No 197
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.98 E-value=1.3e-31 Score=260.84 Aligned_cols=185 Identities=25% Similarity=0.370 Sum_probs=148.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~i 95 (531)
++++|+++.|+...+.+|+|+|+.+.+| |||||||+++|+|..++ ..|++.++|.+... ...++.+
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCeEEECCEEhHHCCHHHHHhhE
Confidence 6788999888533356889988888777 99999999999998653 46899999976422 2345679
Q ss_pred EEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhhc----------------cHHHHHHHHHHHHHhhCC
Q 042733 96 GYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQA----------------LFEQRKRLTVAVEFVANP 154 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~~----------------~~GerqRv~iA~aL~~~p 154 (531)
+|++|++.+++ .|+.|+.. .....+.+.++.+++.+..++ +.|||||++||++++.+|
T Consensus 81 ~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 81 GYVPQDVTLFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEeCCCCcccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999988776 69988731 112345567777777665432 339999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ .. +.||++++|++ |++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~-g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDS-GRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeC-CeEeecC
Confidence 999999999999999999999999998764 89999999987 34 78999999986 8987654
No 198
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=5.5e-31 Score=261.75 Aligned_cols=189 Identities=21% Similarity=0.259 Sum_probs=151.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--Cc-eEEEEEEEcCcccch-----h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--GG-YITRNITVSGYPEKQ-----E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~g-~~~G~i~~~g~~~~~-----~ 89 (531)
.++++|++++|+ .+.+|+++|+.+.+| |||||||+|+|+|..+ +. ..+|+|.++|.+... .
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYG--NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEEC--CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 478899999885 356888888888877 9999999999999754 11 247999999976421 2
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCc----hhhhccH-----HHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELN----PFRQALF-----EQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~----~~~~~~~-----GerqRv~iA~ 148 (531)
..++.++|++|++.+++ .|++|+... ....+++.++.+++. ...+..+ |||||++|||
T Consensus 82 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lar 160 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIAR 160 (251)
T ss_pred HhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHH
Confidence 34667999999988775 799987211 123456677888873 2233333 9999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+.+|++++|||||+|||+.+++.+.+.|+++++ +.|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 161 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 230 (251)
T PRK14251 161 ALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMN-GDLIEAGPT 230 (251)
T ss_pred HHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999854 689999999987 46778999999986 999988875
No 199
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=6e-31 Score=261.80 Aligned_cols=189 Identities=21% Similarity=0.221 Sum_probs=149.8
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccch-----h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEKQ-----E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~~-----~ 89 (531)
.|+++|+++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+. ...+|+|.++|.+... .
T Consensus 6 ~i~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYG--EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEEC--CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 578888888884 356888888777777 99999999999997431 1147999999976532 2
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhcc-----HHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQAL-----FEQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~iA~ 148 (531)
..++.++|++|++.+++. ||+|+.. .....+.+.++.+++.+ ..++. .|||||++|||
T Consensus 84 ~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIAR 162 (253)
T ss_pred hhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHH
Confidence 345679999999888874 9988721 11234556677777632 22333 39999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+.+|++++|||||+|||+.+++.+.+.|+++++ ++|||++||+++ ++.+.+|++++|++ |+++..|++
T Consensus 163 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 232 (253)
T PRK14261 163 TLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-GKLIEFDKT 232 (253)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-CEEEEcCCH
Confidence 99999999999999999999999999999999876 689999999986 46678999999986 999998875
No 200
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=4.7e-31 Score=262.32 Aligned_cols=189 Identities=17% Similarity=0.202 Sum_probs=151.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--C-ceEEEEEEEcCcccch-----h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--G-GYITRNITVSGYPEKQ-----E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~-g~~~G~i~~~g~~~~~-----~ 89 (531)
.-+++|+++.|+ ++.+|+++|+.+.+| |||||||+|+|+|..+ + .+.+|+|.++|.+... .
T Consensus 5 ~~~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 5 HASVKNLNLWYG--SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEEeeeEEEEEC--CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 346788888884 356888888888777 9999999999999753 1 1257999999976422 1
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH-------------HHHHHHHHHHHhcCCch----hhhcc-----HHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH-------------CLYMFIEEGMELVELNP----FRQAL-----FEQRKRLTVA 147 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~-------------~~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~iA 147 (531)
..++.++|++|++.+++. |+.++.. .....+.+.++.+++.+ ..++. .|||||++||
T Consensus 83 ~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 161 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA 161 (251)
T ss_pred HHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence 346779999999887775 8887621 11234567788888854 22332 3999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 232 (251)
T PRK14244 162 RAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIVEYNTT 232 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999985 4899999999987 56778999999996 999998875
No 201
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=5.2e-31 Score=262.11 Aligned_cols=190 Identities=19% Similarity=0.229 Sum_probs=150.6
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--C-ceEEEEEEEcCcccc-----h
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--G-GYITRNITVSGYPEK-----Q 88 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~-g~~~G~i~~~g~~~~-----~ 88 (531)
..++++|+++.|+ ++.+|+++|+.+.+| |||||||+|+|+|..+ + ...+|+|.++|.+.. .
T Consensus 4 ~~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 4 KIITSSDVHLFYG--KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred ceEEEEeEEEEEC--CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4578999999985 356899999888777 9999999999999643 1 124799999997652 1
Q ss_pred hhhcceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCc----hhhhcc-----HHHHHHHHHH
Q 042733 89 ETFARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELN----PFRQAL-----FEQRKRLTVA 147 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~----~~~~~~-----~GerqRv~iA 147 (531)
...++.++|++|++.+++ .|+.++... ....+.+.++.+++. +..+.. .|||||++||
T Consensus 82 ~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~la 160 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIA 160 (252)
T ss_pred HHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHH
Confidence 234678999999988877 699887221 012344456666652 223332 3999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++||+++ .+.+.||++++|++ |+++..|++
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 231 (252)
T PRK14255 161 RVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLT-GNLIEFADT 231 (252)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999976 589999999987 57788999999986 999998875
No 202
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.97 E-value=2.6e-31 Score=255.43 Aligned_cols=177 Identities=24% Similarity=0.284 Sum_probs=147.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILG 96 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ig 96 (531)
++++|+++.|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ..+++.++
T Consensus 1 l~i~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERD--GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDFQRDSIARGLL 76 (201)
T ss_pred CEEEEEEEEeC--CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccccHHhhhheE
Confidence 36788888874 346788888777776 99999999999998653 46899999876432 33567899
Q ss_pred EEecCCCCCCCCcHHhHHHH-----HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 042733 97 YCEQNDIHSPHDTLYDFTHC-----LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGL 166 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~~-----~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgL 166 (531)
|++|++.+++..|++|+... ..+.+++.++.+++.+..++.+ |||||++||++|+.+|++++|||||+||
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 99999888889999987321 2345778889999987666654 9999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE
Q 042733 167 DARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL 209 (531)
Q Consensus 167 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL 209 (531)
|+.+++.+.+.|++++++|.|+|++||++. +....|++++++
T Consensus 157 D~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 157 DKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999998878999999999986 567789999876
No 203
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=2.2e-31 Score=259.53 Aligned_cols=187 Identities=18% Similarity=0.250 Sum_probs=148.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.++++|++++|+...+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL--SSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEhHhCCHHHHhhh
Confidence 36899999999643457999999888776 99999999999997653 46899999976432 345678
Q ss_pred EEEEecCCCCCCCCcHHhHHH----HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhhCC
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH----CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVANP 154 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~----~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~~p 154 (531)
++|++|++.+++ .|++|+.. .....+.+.++.+++.+..+ .+.|||||++|||+|+.+|
T Consensus 80 i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFS-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCcccc-chHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999988665 59988721 11233455566666654432 2239999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++. .||++++|++ |+++..|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~-g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TII-DSDRILVLDK-GRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HHh-hCCEEEEEEC-CeEEecCC
Confidence 99999999999999999999999999864 689999999986 344 5999999986 99988875
No 204
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.97 E-value=4.5e-31 Score=262.68 Aligned_cols=189 Identities=22% Similarity=0.261 Sum_probs=150.2
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcc-----cch---h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYP-----EKQ---E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~-----~~~---~ 89 (531)
.|+++|+++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+ ... .
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~ 78 (253)
T TIGR02323 3 LLQVSGLSKSYG--GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSGAELELYQLSEA 78 (253)
T ss_pred eEEEeeeEEEeC--CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEecccccccccccCCHH
Confidence 478888888885 346788888887776 99999999999998653 46899998865 321 1
Q ss_pred ----hhcceEEEEecCCC--CCCCCcHHhHHH------------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHH
Q 042733 90 ----TFARILGYCEQNDI--HSPHDTLYDFTH------------CLYMFIEEGMELVELN-PFRQALF-----EQRKRLT 145 (531)
Q Consensus 90 ----~~~~~igyv~Q~~~--~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~ 145 (531)
..++.++|++|++. +.+..|+.++.. .....+++.++.+++. ...++.+ ||||||+
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~ 158 (253)
T TIGR02323 79 ERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQ 158 (253)
T ss_pred HHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHH
Confidence 12356999999874 345566665421 1234567788999986 3555444 9999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+.||++++|++ |+++..|++
T Consensus 159 laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 159 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ-GRVVESGLT 233 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999998764 899999999986 56678999999986 999998875
No 205
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.97 E-value=2.1e-31 Score=250.09 Aligned_cols=161 Identities=23% Similarity=0.358 Sum_probs=133.0
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcceE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~i 95 (531)
++++|++++|+..++.+++++|+.+.+| |||||||+++|+|..++ .+|++.++|.+.. ...+++.+
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i 78 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP--TSGRVRLDGADISQWDPNELGDHV 78 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEEcccCCHHHHHhhe
Confidence 3577888887533345788888777776 99999999999997653 4689999997643 23456789
Q ss_pred EEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 042733 96 GYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVI 175 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~ 175 (531)
+|++|++.+++ .|++|+. .+.|||||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 79 ~~~~q~~~~~~-~tv~~~l---------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~ 136 (173)
T cd03246 79 GYLPQDDELFS-GSIAENI---------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALN 136 (173)
T ss_pred EEECCCCcccc-CcHHHHC---------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHH
Confidence 99999987776 4887642 4459999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 176 RMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 176 ~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
+.|++++++|+|+|++||+++ .+ +.||++++|++ |++
T Consensus 137 ~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~-G~i 173 (173)
T cd03246 137 QAIAALKAAGATRIVIAHRPE-TL-ASADRILVLED-GRV 173 (173)
T ss_pred HHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEEC-CCC
Confidence 999999877999999999986 34 67999999986 763
No 206
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8e-31 Score=260.64 Aligned_cols=189 Identities=18% Similarity=0.199 Sum_probs=149.8
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc---eEEEEEEEcCcccch-----h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG---YITRNITVSGYPEKQ-----E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g---~~~G~i~~~g~~~~~-----~ 89 (531)
.++++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++. ...|+|.++|.+... .
T Consensus 4 ~l~~~~l~~~~~--~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYH--KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEEC--CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 467888888885 346888888888777 999999999999975431 235899999976421 2
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCch----hhhcc-----HHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELNP----FRQAL-----FEQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~iA~ 148 (531)
.+++.++|++|++.+++. |++|+... ....+++.++.+++.+ ..++. .|||||++|||
T Consensus 82 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lar 160 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIAR 160 (251)
T ss_pred HhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 356789999999988874 99887210 1233455566666532 23333 39999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+.+|++++|||||+|||+.++..+.+.|++++ +++|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 230 (251)
T PRK14249 161 VLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GDLVEYGRT 230 (251)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-CeEEEeCCH
Confidence 9999999999999999999999999999999985 5899999999987 56788999999986 999998875
No 207
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.7e-31 Score=266.05 Aligned_cols=191 Identities=17% Similarity=0.216 Sum_probs=153.4
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--C-ceEEEEEEEcCcccch----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--G-GYITRNITVSGYPEKQ---- 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~-g~~~G~i~~~g~~~~~---- 88 (531)
...|+++|++++|+ .+.+|+|+|+.+.+| |||||||+|+|+|..+ + ...+|+|.++|.+...
T Consensus 37 ~~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 37 KPHVVAKNFSIYYG--EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred ceEEEEeeeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 34689999999995 356999999988887 9999999999999632 1 1247999999976421
Q ss_pred -hhhcceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCc----hhhhccH-----HHHHHHHH
Q 042733 89 -ETFARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELN----PFRQALF-----EQRKRLTV 146 (531)
Q Consensus 89 -~~~~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~----~~~~~~~-----GerqRv~i 146 (531)
..+++.++|++|++.+++. |+.|+... ....+.+.++.+++. +..++.+ |||||++|
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~L 193 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCV 193 (286)
T ss_pred hHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHH
Confidence 2346789999999888774 99887211 123455667777763 3333333 99999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 194 AraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~-G~i~~~g~~ 265 (286)
T PRK14275 194 ARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYE-GVLVEHAPT 265 (286)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999999999999865 689999999987 46778999999986 999998875
No 208
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7e-31 Score=263.98 Aligned_cols=191 Identities=17% Similarity=0.156 Sum_probs=151.7
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--C-ceEEEEEEEcCcccc-----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--G-GYITRNITVSGYPEK----- 87 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~-g~~~G~i~~~g~~~~----- 87 (531)
...++++|+++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+ + ...+|+|.++|.+..
T Consensus 22 ~~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 22 KVVFDTQNLNLWYG--EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred ceEEEEeeeEEEEC--CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 34689999999996 357999999999888 9999999999999753 1 125799999997652
Q ss_pred hhhhcceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCC----chhhhcc-----HHHHHHHHH
Q 042733 88 QETFARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVEL----NPFRQAL-----FEQRKRLTV 146 (531)
Q Consensus 88 ~~~~~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l----~~~~~~~-----~GerqRv~i 146 (531)
....++.++|++|++.+++ .|+.|+... ....+.+.++.+++ .+..+.. .|||||++|
T Consensus 100 ~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~l 178 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCI 178 (271)
T ss_pred HHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHH
Confidence 1234667999999988776 499887210 01223444555532 2223333 399999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.||++++|++ |+++..|++
T Consensus 179 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~-G~i~~~g~~ 250 (271)
T PRK14238 179 ARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLN-GYVNEYDDT 250 (271)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999999999999876 799999999987 46778999999986 999998875
No 209
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=4.5e-31 Score=254.38 Aligned_cols=177 Identities=20% Similarity=0.242 Sum_probs=144.9
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILG 96 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ig 96 (531)
++++|++++|+ .+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.++
T Consensus 2 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~~~~~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERD--ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIRRQRDEYHQDLL 77 (204)
T ss_pred eEEEEEEEEEC--CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcccchHHhhhheE
Confidence 57788888885 346888888877776 99999999999998653 46899999976432 23556799
Q ss_pred EEecCCCCCCCCcHHhHHH--------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCC
Q 042733 97 YCEQNDIHSPHDTLYDFTH--------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPI 163 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~--------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPt 163 (531)
|++|++.+++.+|+.|+.. .....+++.++.+|+.+..++.+ |||||++||++|+++|++++|||||
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 157 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPF 157 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 9999998889999998821 12346778899999987766655 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE
Q 042733 164 SGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL 209 (531)
Q Consensus 164 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL 209 (531)
+|||+.++..+.+.|++++++|.|||++||+++ .+..+-+|++++
T Consensus 158 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 158 TAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 999999999999999999877899999999987 354544566655
No 210
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.97 E-value=2.1e-31 Score=274.19 Aligned_cols=167 Identities=25% Similarity=0.347 Sum_probs=143.8
Q ss_pred EcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEEEecCCCCCCCCcHHhHHH-----------HHHH
Q 042733 52 FRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGYCEQNDIHSPHDTLYDFTH-----------CLYM 119 (531)
Q Consensus 52 i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~ 119 (531)
+||||||||||||+|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+||.|+.. ....
T Consensus 2 ~G~nGsGKSTLl~~iaGl~~p--~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 2 LGPSGCGKTTLLRLLAGFEQP--DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred cCCCCCCHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 689999999999999998653 47999999976532 223567999999999999999999821 1234
Q ss_pred HHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEec
Q 042733 120 FIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIH 193 (531)
Q Consensus 120 ~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H 193 (531)
++++.++.+++.+..++.+ ||||||+|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||
T Consensus 80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTH 159 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159 (325)
T ss_pred HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5778899999988777665 9999999999999999999999999999999999999999999865 899999999
Q ss_pred CCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 194 QPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 194 ~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+++ ++...||++++|++ |+++..|+++
T Consensus 160 d~~-e~~~~~d~i~vl~~-G~i~~~g~~~ 186 (325)
T TIGR01187 160 DQE-EAMTMSDRIAIMRK-GKIAQIGTPE 186 (325)
T ss_pred CHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 987 57888999999986 9999999864
No 211
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2e-31 Score=244.77 Aligned_cols=192 Identities=21% Similarity=0.290 Sum_probs=162.7
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
+.+.+++++.+|+.....+|+|+|+.+.+| |||||||||+++|..++ ..|.|.+||.++.... ..-|
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P--~~G~i~l~~r~i~gPg--aerg 77 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIEGPG--AERG 77 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc--ccceEEECCEeccCCC--ccce
Confidence 356788899999765556999999888877 99999999999998764 4689999998765322 2348
Q ss_pred EEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
.|+|++.++|++|+.+| +.++...+.+.+..+||.+..++.+ ||||||.|||||+.+|++|+||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLD 157 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLD 157 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeec
Confidence 99999999999999998 4566677888999999998887776 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEcc-CceeeecCCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQ-VGQEISVGPLG 222 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~-~G~~v~~G~~~ 222 (531)
||++.||.-+++++.++|-++.+ .|+.++++||+.+ |..-+++++++|+. .||++..-+++
T Consensus 158 EPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 158 EPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 99999999999999999999876 5999999999987 45557899999973 26787766653
No 212
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.97 E-value=3.6e-31 Score=258.91 Aligned_cols=189 Identities=21% Similarity=0.286 Sum_probs=151.7
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFA 92 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~ 92 (531)
+..|+++|+++.|+ ++++++|+|+.+.+| |||||||+|+|+|..++ .+|++.++|.+.. ....+
T Consensus 5 ~~~i~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~ 80 (225)
T PRK10247 5 SPLLQLQNVGYLAG--DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDISTLKPEIYR 80 (225)
T ss_pred CceEEEeccEEeeC--CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEcCcCCHHHHH
Confidence 34588999999885 456899999888777 99999999999997542 4689999997542 22346
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH---------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH---------CLYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~---------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
+.++|++|++.+++ .|++|+.. .....+++.++.+++. ...++.+ |||||++||++|+.+|+++
T Consensus 81 ~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (225)
T PRK10247 81 QQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVL 159 (225)
T ss_pred hccEEEeccccccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 67999999988776 59998732 1123467788999985 3445444 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
+|||||+|||+.++..+.+.|++++++ |.|||++||+++. + ..||++++|++++..+..|.
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 160 LLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHhhhh
Confidence 999999999999999999999998764 8999999999873 4 46999999964455566664
No 213
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.7e-31 Score=261.92 Aligned_cols=192 Identities=19% Similarity=0.195 Sum_probs=154.6
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC-c--eEEEEEEEcCcccc-----hh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG-G--YITRNITVSGYPEK-----QE 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~-g--~~~G~i~~~g~~~~-----~~ 89 (531)
.|+++|++++|+ .+.+|+|+|+.+.+| |||||||+|+|+|..++ | ...|++.++|.+.. ..
T Consensus 7 ~l~~~nl~~~~~--~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 7 AIKVNNLSFYYD--TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred eEEEeeEEEEeC--CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 578999999985 346899999888877 99999999999997543 1 13689999997642 12
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhc-----cHHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQA-----LFEQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~-----~~GerqRv~iA~ 148 (531)
..++.++|++|+..+++ .|+.|+.. .....+.+.++.+++.+ ..++ +.|||||++||+
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 163 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIAR 163 (261)
T ss_pred HhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 34677999999988877 89988721 11234566778887643 2233 239999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccC----ceeeecCCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQV----GQEISVGPLG 222 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~----G~~v~~G~~~ 222 (531)
+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.+.||++++|+++ |+++..|+++
T Consensus 164 al~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~ 241 (261)
T PRK14258 164 ALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLTK 241 (261)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCHH
Confidence 99999999999999999999999999999999875 4899999999987 578899999999842 8999998863
No 214
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.9e-31 Score=260.89 Aligned_cols=187 Identities=20% Similarity=0.250 Sum_probs=143.3
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcceE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~i 95 (531)
++++|++++|+..++.+++++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+.. ....++.+
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i 78 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVRDYTLASLRRQI 78 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhhhCCHHHHHhhE
Confidence 3678888888533236888888777766 99999999999998653 4689999997643 22346679
Q ss_pred EEEecCCCCCCCCcHHhHHHH-----HHHH---------HHHHHHhc--CCchhhhc-----cHHHHHHHHHHHHHhhCC
Q 042733 96 GYCEQNDIHSPHDTLYDFTHC-----LYMF---------IEEGMELV--ELNPFRQA-----LFEQRKRLTVAVEFVANP 154 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~~-----~~~~---------~~~~l~~l--~l~~~~~~-----~~GerqRv~iA~aL~~~p 154 (531)
+|++|++.+++ .|++|+... .... .++.++.+ ++.+..+. +.|||||++||++|+.+|
T Consensus 79 ~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 157 (234)
T cd03251 79 GLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDP 157 (234)
T ss_pred EEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999988775 699887210 0111 22333333 34333332 339999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++++|||||+|||+.++..+.+.|+++++ |+|||++||+++ ++. .||++++|++ |+++..|++
T Consensus 158 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~v~~l~~-G~i~~~~~~ 220 (234)
T cd03251 158 PILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIE-NADRIVVLED-GKIVERGTH 220 (234)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHh-hCCEEEEecC-CeEeeeCCH
Confidence 99999999999999999999999999864 899999999987 454 4999999996 899988864
No 215
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=5.2e-31 Score=287.05 Aligned_cols=192 Identities=21% Similarity=0.330 Sum_probs=155.9
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~~ 94 (531)
|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+++..+|+|.++|.+... ...++.
T Consensus 2 l~i~~l~~~~~--~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFG--GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeC--CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 57788888874 346788888777666 999999999999976532247999999976532 123457
Q ss_pred EEEEecCCCCCCCCcHHhHHH---------------HHHHHHHHHHHhcCCchhh-hcc-----HHHHHHHHHHHHHhhC
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH---------------CLYMFIEEGMELVELNPFR-QAL-----FEQRKRLTVAVEFVAN 153 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~---------------~~~~~~~~~l~~l~l~~~~-~~~-----~GerqRv~iA~aL~~~ 153 (531)
+||++|++.+++.+|+.|+.. ....++++.++.+++.+.. ++. .||||||+||++|+.+
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~ 159 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQ 159 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhC
Confidence 999999998889999988721 1123567788999987543 332 3999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+++.
T Consensus 160 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 227 (500)
T TIGR02633 160 ARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVATKDMST 227 (500)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEeeecCccc
Confidence 9999999999999999999999999999888999999999987 57788999999986 99999988754
No 216
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.4e-31 Score=263.77 Aligned_cols=194 Identities=15% Similarity=0.176 Sum_probs=154.2
Q ss_pred cceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccc----
Q 042733 24 EPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEK---- 87 (531)
Q Consensus 24 ~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~---- 87 (531)
.+..|+++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..+. ...+|+|.++|.+..
T Consensus 17 ~~~~l~~~nl~~~~~--~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 17 DHSVFEVEGVKVFYG--GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred CCceEEEeeEEEEeC--CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence 455799999999996 356999999888887 99999999999997431 124689999997642
Q ss_pred -hhhhcceEEEEecCCCCCCCCcHHhHHHH----------HHHHHHHHHHhcCCc----hhhhcc-----HHHHHHHHHH
Q 042733 88 -QETFARILGYCEQNDIHSPHDTLYDFTHC----------LYMFIEEGMELVELN----PFRQAL-----FEQRKRLTVA 147 (531)
Q Consensus 88 -~~~~~~~igyv~Q~~~~~~~ltv~e~~~~----------~~~~~~~~l~~l~l~----~~~~~~-----~GerqRv~iA 147 (531)
...+++.++|++|+..+++. |+.++... ....+++.++.+++. +..++. .||||||+||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 173 (274)
T PRK14265 95 NSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIA 173 (274)
T ss_pred hhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHH
Confidence 12346789999999887764 88887211 122345566666653 233333 3999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc--------cCceeeecC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK--------QVGQEISVG 219 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~--------~~G~~v~~G 219 (531)
|||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.||++++|+ ++|+++..|
T Consensus 174 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g 251 (274)
T PRK14265 174 RAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFS 251 (274)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccccccccCceEEEeC
Confidence 999999999999999999999999999999999965 689999999987 5778999999997 249999999
Q ss_pred CCC
Q 042733 220 PLG 222 (531)
Q Consensus 220 ~~~ 222 (531)
+++
T Consensus 252 ~~~ 254 (274)
T PRK14265 252 PTE 254 (274)
T ss_pred CHH
Confidence 863
No 217
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.97 E-value=7.4e-31 Score=260.26 Aligned_cols=190 Identities=25% Similarity=0.260 Sum_probs=148.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh-hcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-FARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-~~~~ 94 (531)
++++|+++.|+ .+.+|+++|+.+.+| |||||||+|+|+|..+....+|++.++|.+... .. .++.
T Consensus 2 i~~~nl~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVE--DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeC--CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 67889998885 356889988888776 999999999999983101257999999976532 11 2356
Q ss_pred EEEEecCCCCCCCCcHHhHHH------------------HHHHHHHHHHHhcCCc-hhh------hccHHHHHHHHHHHH
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH------------------CLYMFIEEGMELVELN-PFR------QALFEQRKRLTVAVE 149 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~------------------~~~~~~~~~l~~l~l~-~~~------~~~~GerqRv~iA~a 149 (531)
++|++|++.+++.+++.++.. .....+++.++.+++. +.. +.+.||||||+||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lara 159 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM 159 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHH
Confidence 999999988777666543210 1123456677777774 222 244499999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhc-cCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYS-FDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~d~v~lL~~~G~~v~~G~~ 221 (531)
|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++ |++++.|+.
T Consensus 160 l~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~-g~i~~~g~~ 230 (248)
T PRK09580 160 AVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-GRIVKSGDF 230 (248)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEEC-CeEEEeCCH
Confidence 99999999999999999999999999999999877899999999976 34444 899999986 999999875
No 218
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.97 E-value=6.1e-31 Score=258.15 Aligned_cols=184 Identities=20% Similarity=0.300 Sum_probs=148.2
Q ss_pred EEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCc--eEEEEEEEcCcccchhhh-cceEEEEecCCC--C
Q 042733 30 LNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGG--YITRNITVSGYPEKQETF-ARILGYCEQNDI--H 104 (531)
Q Consensus 30 ~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g--~~~G~i~~~g~~~~~~~~-~~~igyv~Q~~~--~ 104 (531)
++|++++... .++.+.+||||||||||+|+|+|..++. ..+|+|.++|.+...... ++.++|++|++. +
T Consensus 2 l~~vs~~i~~------Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~ 75 (230)
T TIGR02770 2 VQDLNLSLKR------GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAF 75 (230)
T ss_pred ccceeEEEcC------CCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhc
Confidence 4677777753 3578889999999999999999976530 147999999987643223 357999999974 5
Q ss_pred CCCCcHHhHH-----------HHHHHHHHHHHHhcCCc---hhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 042733 105 SPHDTLYDFT-----------HCLYMFIEEGMELVELN---PFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISG 165 (531)
Q Consensus 105 ~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~---~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsg 165 (531)
.+.+|+.++. ......+++.++.+++. +..++.+ ||||||+||++|+.+|++|+|||||+|
T Consensus 76 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~ 155 (230)
T TIGR02770 76 NPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTD 155 (230)
T ss_pred CcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 5667887651 11123467889999997 3445444 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 166 LDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 166 LD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|++ |+++..|++
T Consensus 156 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 156 LDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999874 899999999987 57778999999986 999998875
No 219
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.97 E-value=5.3e-31 Score=249.38 Aligned_cols=162 Identities=18% Similarity=0.314 Sum_probs=129.6
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcC---------CCchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRP---------GGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~---------gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~~ 94 (531)
++++|++++| +|+++|+.+++ ||||||||+|+|+|..++ .+|++.++|.+... ...++.
T Consensus 5 l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 5 LEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP--ASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCccCHHHHHhCC
Confidence 5555665554 45555555554 499999999999998653 46899999976532 234567
Q ss_pred EEEEecCC---CCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 042733 95 LGYCEQND---IHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAA 171 (531)
Q Consensus 95 igyv~Q~~---~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~ 171 (531)
++|++|+. .+++.+|++|+...... .+.|||||++||+||+.+|++++|||||+|||+.++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~ 140 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL----------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAK 140 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh----------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHH
Confidence 99999984 57788899886322110 455999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 172 TTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 172 ~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
+.+.+.|++++++|+|+|+++|+++ ++.+.||++++|++ |++
T Consensus 141 ~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~-G~i 182 (182)
T cd03215 141 AEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYE-GRI 182 (182)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecC-CcC
Confidence 9999999999877899999999986 57788999999986 763
No 220
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.97 E-value=2.5e-31 Score=299.99 Aligned_cols=188 Identities=23% Similarity=0.275 Sum_probs=157.5
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++||+|+|+..++++|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+.. ...+|+
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~i~~~~~~~lr~ 527 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP--ESGSVFYDGQDLAGLDVQAVRR 527 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEcCcCCHHHHHh
Confidence 368999999999755568999999999998 99999999999998663 4799999998764 356788
Q ss_pred eEEEEecCCCCCCCCcHHhHHH----HHHHHHHHHHHhcCCchhhhc----------------cHHHHHHHHHHHHHhhC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH----CLYMFIEEGMELVELNPFRQA----------------LFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~----~~~~~~~~~l~~l~l~~~~~~----------------~~GerqRv~iA~aL~~~ 153 (531)
.+|||+|++.+++ -|++||.. ...+.+.++++..++.+..+. +.|||||++|||||+++
T Consensus 528 ~i~~v~Q~~~lf~-gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~ 606 (686)
T TIGR03797 528 QLGVVLQNGRLMS-GSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK 606 (686)
T ss_pred ccEEEccCCccCc-ccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999988765 69999832 223456677777776654322 23899999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|++|+||||||+||+.+.+++.+.|+++ ++|+|+++|+++ ..+.+|+|++|++ |+++..|+.+
T Consensus 607 p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~-G~iv~~G~~~ 669 (686)
T TIGR03797 607 PRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA-GRVVQQGTYD 669 (686)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999876 589999999985 4577999999986 9999999853
No 221
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-30 Score=268.69 Aligned_cols=193 Identities=17% Similarity=0.154 Sum_probs=156.2
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccch-----
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEKQ----- 88 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~~----- 88 (531)
..|+++|++++|..+.+.+|+|+|+.+.+| |||||||+++|+|..+. ...+|+|.++|.+...
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 468999999999644457999999999988 99999999999997531 1347999999987642
Q ss_pred hhhcceEEEEecCCCCCCCCcHHhHHH--H-------H---HHHHHHHHHhcCCch----hhhc-----cHHHHHHHHHH
Q 042733 89 ETFARILGYCEQNDIHSPHDTLYDFTH--C-------L---YMFIEEGMELVELNP----FRQA-----LFEQRKRLTVA 147 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~~~~~ltv~e~~~--~-------~---~~~~~~~l~~l~l~~----~~~~-----~~GerqRv~iA 147 (531)
..+++.++|++|++.++. .|++|+.. . . ...+.+.++.+++.+ ..+. +.|||||++||
T Consensus 159 ~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LA 237 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIA 237 (329)
T ss_pred HhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHH
Confidence 245678999999988774 79998732 1 0 112455677776632 2222 23999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|+|++||+++ .+.+.||++++|++ |+++..|+++
T Consensus 238 RAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G~i~e~g~~~ 309 (329)
T PRK14257 238 RAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-GWIEEAGETK 309 (329)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999999999999875 699999999987 46778999999996 9999999864
No 222
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.97 E-value=4e-31 Score=265.51 Aligned_cols=189 Identities=15% Similarity=0.209 Sum_probs=157.2
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.|+++|++++|+.+...+|+|+|+.+.+| |||||||+++|+|..+ .+|+|.++|.+... ..+++.
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhhhCCHHHHhhh
Confidence 47899999999644557999999999888 9999999999999865 25999999986532 346778
Q ss_pred EEEEecCCCCCCCCcHHhHHH----HHHHHHHHHHHhcCCchhhhc----------------cHHHHHHHHHHHHHhhCC
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH----CLYMFIEEGMELVELNPFRQA----------------LFEQRKRLTVAVEFVANP 154 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~----~~~~~~~~~l~~l~l~~~~~~----------------~~GerqRv~iA~aL~~~p 154 (531)
++|++|++.+++ .|++++.. ...+.+.+.++.+|+.+..+. +.|||||++|||||+.+|
T Consensus 79 i~~v~q~~~lf~-~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFS-GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccch-hhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999998887 49998742 123456677888888765443 349999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
++++|||||+|||+.+...+.+.|+++. +++|||+++|+++ .+. .|||+++|++ |+++..|++++
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~-~~dri~vl~~-G~i~~~g~~~~ 222 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AML-ECQRFLVIEE-NKVRQYDSIQK 222 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HHH-hCCEEEEecC-CeEeecCCHHH
Confidence 9999999999999999999999999874 4899999999986 444 5999999986 99999998753
No 223
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=263.70 Aligned_cols=191 Identities=20% Similarity=0.235 Sum_probs=154.2
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccc-----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEK----- 87 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~----- 87 (531)
...|+++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..+. ...+|+|.++|.+..
T Consensus 37 ~~~l~i~~l~~~~~--~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 37 ETVIEARDLNVFYG--DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CceEEEEEEEEEEC--CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 45699999999995 357999999998887 99999999999997541 124799999997642
Q ss_pred hhhhcceEEEEecCCCCCCCCcHHhHHH----------HHHHHHHHHHHhcCCc----hhhhcc-----HHHHHHHHHHH
Q 042733 88 QETFARILGYCEQNDIHSPHDTLYDFTH----------CLYMFIEEGMELVELN----PFRQAL-----FEQRKRLTVAV 148 (531)
Q Consensus 88 ~~~~~~~igyv~Q~~~~~~~ltv~e~~~----------~~~~~~~~~l~~l~l~----~~~~~~-----~GerqRv~iA~ 148 (531)
....++.++|++|++.+++. |+.|+.. .....+++.++.+++. +..++. .|||||++||+
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAr 193 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIAR 193 (285)
T ss_pred hHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHH
Confidence 12356789999999887775 9988722 1234567788888874 233333 39999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEE-EEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELF-LLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~-lL~~~G~~v~~G~~ 221 (531)
+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++ .+...||+++ +|++ |+++..|++
T Consensus 194 aL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l~~-G~i~~~g~~ 264 (285)
T PRK14254 194 AIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFLTG-GELVEFDDT 264 (285)
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEeeC-CEEEEeCCH
Confidence 99999999999999999999999999999999976 489999999987 5677899975 5675 999988875
No 224
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.8e-31 Score=286.13 Aligned_cols=189 Identities=24% Similarity=0.321 Sum_probs=155.8
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~ 93 (531)
.++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++
T Consensus 4 ~l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~ 79 (501)
T PRK11288 4 YLSFDGIGKTFP--GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEMRFASTTAALAA 79 (501)
T ss_pred eEEEeeeEEEEC--CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECCCCCHHHHHhC
Confidence 477888888884 346788888777766 99999999999998653 46899999976431 23456
Q ss_pred eEEEEecCCCCCCCCcHHhHHH--------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH--------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~--------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
.+||++|++.+++.+||.++.. ....++++.++.+++.+..++.+ ||||||+||++|+.+|
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p 159 (501)
T PRK11288 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNA 159 (501)
T ss_pred CEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCC
Confidence 7999999998899999988721 11245677899999976555544 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...||++++|++ |+++..++.
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 224 (501)
T PRK11288 160 RVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVATFDD 224 (501)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCc
Confidence 999999999999999999999999999878999999999987 56788999999986 999876653
No 225
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.97 E-value=5.4e-31 Score=261.43 Aligned_cols=183 Identities=23% Similarity=0.350 Sum_probs=152.2
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceEEEEecCCCCC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARILGYCEQNDIHS 105 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~igyv~Q~~~~~ 105 (531)
.++|+++++.. ..+.+.+||||||||||+|+|+|..+. +|++.++|.+... ...++.++|++|++.++
T Consensus 11 ~l~~vsl~i~~------Gei~~l~G~nGsGKSTLl~~l~Gl~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~ 81 (248)
T PRK03695 11 RLGPLSAEVRA------GEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPP 81 (248)
T ss_pred eecceEEEEcC------CCEEEEECCCCCCHHHHHHHHcCCCCC---CeEEEECCEecCcCCHHHHhhheEEecccCccC
Confidence 46788888753 356788899999999999999998642 6999999976532 23456689999998888
Q ss_pred CCCcHHhHHH----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhh-------CCCeEEEeCCC
Q 042733 106 PHDTLYDFTH----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVA-------NPSIISRDEPI 163 (531)
Q Consensus 106 ~~ltv~e~~~----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~-------~p~lllLDEPt 163 (531)
+.+|+.++.. .....+++.++.+++.+..++.+ |||||++||++|+. +|++++|||||
T Consensus 82 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt 161 (248)
T PRK03695 82 FAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPM 161 (248)
T ss_pred CCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCc
Confidence 8899988621 12345778899999987666554 99999999999998 67999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 164 SGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 164 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||+.++..+.+.|++++++|+|||++||+++ ++...||++++|++ |+++..|+.+
T Consensus 162 ~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 218 (248)
T PRK03695 162 NSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRRD 218 (248)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999877999999999987 57789999999986 9999988753
No 226
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.97 E-value=1.4e-30 Score=258.90 Aligned_cols=192 Identities=22% Similarity=0.281 Sum_probs=152.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc-
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR- 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~- 93 (531)
.++++|+++.|+ ++.+|+++|+.+.+| |||||||+|+|+|.....+.+|++.++|.+... ...++
T Consensus 7 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVN--ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeC--CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 578999999985 356999999888887 999999999999962111246899999976532 12222
Q ss_pred eEEEEecCCCCCCCCcHHhHHHH------------------HHHHHHHHHHhcCCch-hhh------ccHHHHHHHHHHH
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTHC------------------LYMFIEEGMELVELNP-FRQ------ALFEQRKRLTVAV 148 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~~------------------~~~~~~~~l~~l~l~~-~~~------~~~GerqRv~iA~ 148 (531)
.++|++|++.+++.+|+.++... ....+.+.++.+++.+ ..+ .+.||||||+||+
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~ 164 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQ 164 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHH
Confidence 47899999988888888776210 1134567788888863 322 3449999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhc-cCeEEEEccCceeeecCCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYS-FDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|+.+|++++|||||+|||+.+++.+.+.|++++++|+|||++||+++. +... +|++++|++ |++++.|+++
T Consensus 165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 237 (252)
T CHL00131 165 MALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQN-GKIIKTGDAE 237 (252)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeC-CEEEEecChh
Confidence 9999999999999999999999999999999998779999999999763 4444 899999986 9999999863
No 227
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.3e-31 Score=262.11 Aligned_cols=190 Identities=16% Similarity=0.188 Sum_probs=151.1
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC--c-eEEEEEEEcCcccc-----hh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG--G-YITRNITVSGYPEK-----QE 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~--g-~~~G~i~~~g~~~~-----~~ 89 (531)
.|+++|++++|+ .+++|+|+|+.+.+| |||||||+|+|+|..+. . ..+|+|.++|.+.. ..
T Consensus 10 ~l~i~~v~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYG--SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEEC--CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 589999999995 357899999888887 99999999999996431 1 24799999997642 22
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH----------HHHHHHHHHHHhcCCch----hhhc-----cHHHHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH----------CLYMFIEEGMELVELNP----FRQA-----LFEQRKRLTVAVEF 150 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~----------~~~~~~~~~l~~l~l~~----~~~~-----~~GerqRv~iA~aL 150 (531)
..++.++|++|++.+++ .|+.|+.. ...+.+++.++.+++.+ ..++ +.|||||++|||||
T Consensus 88 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral 166 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAI 166 (264)
T ss_pred HHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 34667999999988777 49988721 11233455566666632 2232 33999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc--------CceeeecCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ--------VGQEISVGPL 221 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~--------~G~~v~~G~~ 221 (531)
+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++ .|+++..|++
T Consensus 167 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 167 AVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRYGYLVEFDRT 243 (264)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccccccccCceEEEeCCH
Confidence 999999999999999999999999999999976 589999999987 57889999999971 3899998875
No 228
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.4e-30 Score=259.85 Aligned_cols=190 Identities=19% Similarity=0.261 Sum_probs=152.6
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--Cce--EEEEEEEcCcccc---hhh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--GGY--ITRNITVSGYPEK---QET 90 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~g~--~~G~i~~~g~~~~---~~~ 90 (531)
.+++++++++|+ .+.+|+|+|+.+.+| |||||||+++|+|..+ .|. +.|++.++|.+.. ...
T Consensus 10 ~i~~~~~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYIN--DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecC--CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 478899999885 457889999888877 9999999999999754 332 3466666665532 223
Q ss_pred hcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhccH-----HHHHHHHHHHH
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQALF-----EQRKRLTVAVE 149 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~~~-----GerqRv~iA~a 149 (531)
.++.++|++|++.+++.+|+.++.. .....+.+.++.+++.+ ..+..+ |||||++|||+
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lara 167 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARA 167 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHH
Confidence 5678999999999888899988721 11234567788888852 333333 99999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+...||++++|++ |+++..|+.
T Consensus 168 l~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~-g~i~~~g~~ 236 (257)
T PRK14246 168 LALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN-GELVEWGSS 236 (257)
T ss_pred HHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999999999999865 699999999986 46688999999986 999999875
No 229
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=258.99 Aligned_cols=189 Identities=19% Similarity=0.207 Sum_probs=150.5
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--C-ceEEEEEEEcCcccch-----h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--G-GYITRNITVSGYPEKQ-----E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~-g~~~G~i~~~g~~~~~-----~ 89 (531)
.++++||++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+ + ...+|+|.++|.+... .
T Consensus 3 ~l~~~~v~~~~~--~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFD--DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeC--CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 467888888885 356888888887776 9999999999999642 1 1247999999976431 2
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhcc-----HHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQAL-----FEQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~iA~ 148 (531)
..++.++|++|++.+++. |+.++.. .....+.+.++.+++.+ ..++. .|||||++|||
T Consensus 81 ~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lar 159 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred HHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHH
Confidence 346789999999888774 8888621 11234566677777632 22333 39999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++...+|++++|++ |++++.|++
T Consensus 160 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14266 160 TIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GEIIESGLT 229 (250)
T ss_pred HHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-CeEEEeCCH
Confidence 99999999999999999999999999999999864 889999999987 57788999999986 999999875
No 230
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.97 E-value=4.8e-31 Score=248.72 Aligned_cols=167 Identities=25% Similarity=0.397 Sum_probs=136.6
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILG 96 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ig 96 (531)
++++|++++|+...+.+++|+|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ..+++.++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP--QQGEITLDGVPVSDLEKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCEEHHHHHHHHHhhEE
Confidence 3678888888633236888888888777 99999999999998653 46899999976432 23567799
Q ss_pred EEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 042733 97 YCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR 176 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~ 176 (531)
|++|++.+++ .|++|+. ....+.|||||++|||+++.+|++++|||||+|||+.+++.+++
T Consensus 79 ~~~q~~~~~~-~tv~~~i------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~ 139 (178)
T cd03247 79 VLNQRPYLFD-TTLRNNL------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139 (178)
T ss_pred EEccCCeeec-ccHHHhh------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH
Confidence 9999987765 6887642 23445599999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 177 MVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 177 ~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
.|++++ ++.|||++||+++ ++ ..+|++++|++ |++++.|
T Consensus 140 ~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~-g~i~~~~ 178 (178)
T cd03247 140 LIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLEN-GKIIMQG 178 (178)
T ss_pred HHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEecC
Confidence 999985 5899999999987 34 46999999986 8988654
No 231
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6e-31 Score=285.95 Aligned_cols=187 Identities=23% Similarity=0.299 Sum_probs=150.5
Q ss_pred EeEEEEEeCCCccccccEEEEEc---------CCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcceEEE
Q 042733 31 NEIVYSVDMPQIGDLNSLSGAFR---------PGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFARILGY 97 (531)
Q Consensus 31 ~~ls~~~~~~~~~iL~~vs~~i~---------~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~~igy 97 (531)
+|++++|+ ++.+|+|+|+.+. |||||||||+|+|+|..++ .+|+|.++|.+... ...++.++|
T Consensus 2 ~nl~~~~~--~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 2 SNISKSFP--GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CceEEEeC--CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCCHHHHHhCCEEE
Confidence 35555553 2345555555555 5599999999999998653 47999999976431 224567999
Q ss_pred EecCCCCCCCCcHHhHHH--------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 98 CEQNDIHSPHDTLYDFTH--------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~--------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
++|++.+++.+||.|+.. .....+++.++.+++.+..++.+ ||||||+||++|+.+|++|+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lll 157 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVI 157 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 999988888999988621 11235677889999876655554 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |+++..|++++
T Consensus 158 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 158 MDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 99999999999999999999999888999999999987 56778999999996 99999998764
No 232
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=5.3e-31 Score=248.47 Aligned_cols=162 Identities=25% Similarity=0.312 Sum_probs=134.2
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-----hhhcce
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-----ETFARI 94 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-----~~~~~~ 94 (531)
+++|++++|+ ++++++++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ...++.
T Consensus 2 ~~~~l~~~~~--~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 2 ELKNVSKRYG--QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred EEEEEEEEEC--CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccchhHHHHhhc
Confidence 5677777774 345777777777766 99999999999998653 47999999976432 245678
Q ss_pred EEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 042733 95 LGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTV 174 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i 174 (531)
++|++|++.+++..|++|+.... .+.|||||++||++|+.+|++++|||||+|||+.++..+
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l 139 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV 139 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHH
Confidence 99999998888888987752210 455999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 175 IRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 175 ~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
.+.|++++++ |+|+|++||++. ++.+.||++++|++ |+
T Consensus 140 ~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~ 178 (178)
T cd03229 140 RALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRD-GK 178 (178)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CC
Confidence 9999999887 899999999986 46668999999986 64
No 233
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.9e-31 Score=259.13 Aligned_cols=187 Identities=22% Similarity=0.321 Sum_probs=145.3
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.++++|++++|+. .+.+++|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.
T Consensus 2 ~l~~~~l~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 2 EIEFENVNFSYDE-KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred eEEEEEEEEecCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEeHHHcCHHHHhhh
Confidence 4688999998852 245889988888777 99999999999998653 46899999976432 235677
Q ss_pred EEEEecCCCCCCCCcHHhHHHH-----HHHHHHHHHHhcCCchhh----------------hccHHHHHHHHHHHHHhhC
Q 042733 95 LGYCEQNDIHSPHDTLYDFTHC-----LYMFIEEGMELVELNPFR----------------QALFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~~-----~~~~~~~~l~~l~l~~~~----------------~~~~GerqRv~iA~aL~~~ 153 (531)
++|++|++.+++. |+.|+... ....+++.++.+++.+.. ..+.||||||+||++|+.+
T Consensus 79 i~~~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 79 IGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred EEEecCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 9999999877764 88887211 112233344444443222 2223999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|++++|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++ ..||++++|++ |++++.|+.
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~-g~~~~~~~~ 221 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD-GKIIEEGTH 221 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-CeEEEeCCH
Confidence 99999999999999999999999999986 5899999999986 34 45999999986 999987764
No 234
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.2e-32 Score=260.04 Aligned_cols=172 Identities=20% Similarity=0.353 Sum_probs=151.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hhhcceEEEEecCCCCCCCCcHHhH-----H
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ETFARILGYCEQNDIHSPHDTLYDF-----T 114 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~~~~~igyv~Q~~~~~~~ltv~e~-----~ 114 (531)
+|+..+|++|||||||+|+|+|+..+ .+|.|.+||....+ ...+|++|||+||-.+||++||+.| .
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rP--deG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~ 102 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRP--DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMW 102 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCc--cccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhc
Confidence 78999999999999999999997653 46888888875321 2346889999999999999999988 2
Q ss_pred HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeE
Q 042733 115 HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTV 188 (531)
Q Consensus 115 ~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tv 188 (531)
.......+++.+.+|++|..++.. ||||||+|+|||++.|++|+||||.+.||..-+.+++-.|.+++++ ...|
T Consensus 103 ~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPI 182 (352)
T COG4148 103 KSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPI 182 (352)
T ss_pred ccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCE
Confidence 223456788999999999998876 9999999999999999999999999999999999999999999986 8899
Q ss_pred EEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 189 VCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 189 i~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+.+||.++ |+.+++|+|++|.+ |++.+.|+.+
T Consensus 183 lYVSHS~~-Ev~RLAd~vV~le~-GkV~A~g~~e 214 (352)
T COG4148 183 LYVSHSLD-EVLRLADRVVVLEN-GKVKASGPLE 214 (352)
T ss_pred EEEecCHH-HHHhhhheEEEecC-CeEEecCcHH
Confidence 99999987 79999999999986 9999999864
No 235
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.97 E-value=1.1e-30 Score=259.64 Aligned_cols=181 Identities=22% Similarity=0.283 Sum_probs=147.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGY 97 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igy 97 (531)
.++++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.+++ +..++|
T Consensus 4 ~l~~~~l~~~~~--~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~~--------~~~i~~ 71 (251)
T PRK09544 4 LVSLENVSVSFG--QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVIKRNG--------KLRIGY 71 (251)
T ss_pred EEEEeceEEEEC--CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECC--------ccCEEE
Confidence 467888888885 346888888777766 99999999999998653 468898876 235899
Q ss_pred EecCCCCCCCC--cHHhHHH----HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 042733 98 CEQNDIHSPHD--TLYDFTH----CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGL 166 (531)
Q Consensus 98 v~Q~~~~~~~l--tv~e~~~----~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgL 166 (531)
++|++.+++.+ |+.++.. .....+.+.++.+++.+..++.+ |||||++||++|+.+|++++|||||+||
T Consensus 72 v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~L 151 (251)
T PRK09544 72 VPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGV 151 (251)
T ss_pred eccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 99998776653 6666521 11245677889999987766655 9999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 167 DARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 167 D~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|+ |+++..|+++
T Consensus 152 D~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~--~~i~~~g~~~ 205 (251)
T PRK09544 152 DVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN--HHICCSGTPE 205 (251)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC--CceEeeCCHH
Confidence 999999999999999875 899999999987 5778899999995 4688888753
No 236
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.97 E-value=1.3e-30 Score=276.47 Aligned_cols=194 Identities=24% Similarity=0.361 Sum_probs=163.5
Q ss_pred cceEEEEEeEEEEEeCC---------CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 042733 24 EPHYISLNEIVYSVDMP---------QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYP 85 (531)
Q Consensus 24 ~~~~l~~~~ls~~~~~~---------~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~ 85 (531)
....++++||++.|..+ ...+++|||+.+.+| |||||||.|+|+|+.++ ..|.+.++|.+
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~ 354 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQD 354 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcc
Confidence 34568999999999842 236899999999998 99999999999998664 46899999876
Q ss_pred c--c---hhhhcceEEEEecCC--CCCCCCcHHhH------------HHHHHHHHHHHHHhcCCch-hhhccH-----HH
Q 042733 86 E--K---QETFARILGYCEQND--IHSPHDTLYDF------------THCLYMFIEEGMELVELNP-FRQALF-----EQ 140 (531)
Q Consensus 86 ~--~---~~~~~~~igyv~Q~~--~~~~~ltv~e~------------~~~~~~~~~~~l~~l~l~~-~~~~~~-----Ge 140 (531)
. . ....++.+-+++|++ .+.|.+||.+. ....++++++.++.++|.+ ..++.+ ||
T Consensus 355 ~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQ 434 (539)
T COG1123 355 LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQ 434 (539)
T ss_pred cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcch
Confidence 2 1 123456777888876 57899999987 1334457899999999986 456655 99
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 141 RKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 141 rqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
|||++|||||+.+|++|++|||||.||+..+.+++++|+++.++ |.|.|++|||.+ -+.+.||||.+|.+ |+++..|
T Consensus 435 rQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~-G~iVE~G 512 (539)
T COG1123 435 RQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYD-GRIVEEG 512 (539)
T ss_pred hHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEEC-CeEEEeC
Confidence 99999999999999999999999999999999999999999976 999999999987 37779999999996 9999999
Q ss_pred CC
Q 042733 220 PL 221 (531)
Q Consensus 220 ~~ 221 (531)
+.
T Consensus 513 ~~ 514 (539)
T COG1123 513 PT 514 (539)
T ss_pred CH
Confidence 75
No 237
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.3e-31 Score=291.48 Aligned_cols=193 Identities=20% Similarity=0.235 Sum_probs=160.6
Q ss_pred eEEEEEeEEEEEeCC---------CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc
Q 042733 26 HYISLNEIVYSVDMP---------QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK 87 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~---------~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~ 87 (531)
..|+++||++.|+.. ...+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+..
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~i~ 389 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES--QGGEIIFNGQRID 389 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCcEEEECCEECC
Confidence 469999999999521 246899999888887 99999999999998653 4689999997542
Q ss_pred h------hhhcceEEEEecCC--CCCCCCcHHhHHH------------HHHHHHHHHHHhcCCc-hhhhccH-----HHH
Q 042733 88 Q------ETFARILGYCEQND--IHSPHDTLYDFTH------------CLYMFIEEGMELVELN-PFRQALF-----EQR 141 (531)
Q Consensus 88 ~------~~~~~~igyv~Q~~--~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~-~~~~~~~-----Ger 141 (531)
. ..+++.++|++|++ .+++.+||.++.. ....++.+.++.+|+. ...++.+ |||
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqr 469 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQR 469 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHH
Confidence 1 12456799999996 5788899988721 1224577889999995 4555554 999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 142 KRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 142 qRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
|||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||++ .+.+.||++++|++ |+++..|+
T Consensus 470 QRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~ 547 (623)
T PRK10261 470 QRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGP 547 (623)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecC
Confidence 9999999999999999999999999999999999999999875 899999999987 57788999999986 99999998
Q ss_pred CC
Q 042733 221 LG 222 (531)
Q Consensus 221 ~~ 222 (531)
++
T Consensus 548 ~~ 549 (623)
T PRK10261 548 RR 549 (623)
T ss_pred HH
Confidence 64
No 238
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.97 E-value=4.8e-31 Score=293.10 Aligned_cols=189 Identities=20% Similarity=0.292 Sum_probs=157.7
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++|++|+|+. ++++|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++
T Consensus 339 ~~i~~~~v~f~y~~-~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i~~~~~~~l~~ 415 (592)
T PRK10790 339 GRIDIDNVSFAYRD-DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRPLSSLSHSVLRQ 415 (592)
T ss_pred CeEEEEEEEEEeCC-CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEhhhCCHHHHHh
Confidence 46899999999973 457999999999888 99999999999998664 3689999998754 346788
Q ss_pred eEEEEecCCCCCCCCcHHhHHH----HHHHHHHHHHHhcCCchhhhc----------------cHHHHHHHHHHHHHhhC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH----CLYMFIEEGMELVELNPFRQA----------------LFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~----~~~~~~~~~l~~l~l~~~~~~----------------~~GerqRv~iA~aL~~~ 153 (531)
.++|++|++.+++ -|+++|.. ...+.+.++++..|+.+..++ +.|||||++|||||+++
T Consensus 416 ~i~~v~Q~~~lF~-~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~ 494 (592)
T PRK10790 416 GVAMVQQDPVVLA-DTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQT 494 (592)
T ss_pred heEEEccCCcccc-chHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999998876 49999821 123456677777776654332 22899999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|++++||||||+||+.+.+.+.+.|+++.+ ++|+|++||+++ ....||+|++|++ |+++..|+.+
T Consensus 495 ~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~-G~i~~~G~~~ 559 (592)
T PRK10790 495 PQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHR-GQAVEQGTHQ 559 (592)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999999998764 699999999985 4567999999986 9999999863
No 239
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.97 E-value=2.8e-31 Score=300.76 Aligned_cols=187 Identities=24% Similarity=0.338 Sum_probs=155.7
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++|++|+|+..++++|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+.. ...+|+
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~i~~~~~~~lr~ 553 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEILFDGIPREEIPREVLAN 553 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEeHHHCCHHHHHh
Confidence 468999999999865568999999999998 99999999999998653 4699999998764 345788
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhhc----------------cHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQA----------------LFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~~----------------~~GerqRv~iA~aL~~ 152 (531)
.+|||+|++.++ +.|++||.. ...+.+.++++..++.+..+. +.|||||++|||||++
T Consensus 554 ~i~~v~Q~~~lf-~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~ 632 (710)
T TIGR03796 554 SVAMVDQDIFLF-EGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR 632 (710)
T ss_pred heeEEecCChhh-hccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh
Confidence 999999998877 469999821 123445566666666543322 2289999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++++||||||+||+.+++++.+.|++ .++|+|++||+++ ....||++++|++ |+++..|+.
T Consensus 633 ~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~-G~i~~~G~~ 695 (710)
T TIGR03796 633 NPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER-GKVVQRGTH 695 (710)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC-CEEEEecCH
Confidence 9999999999999999999999999976 4899999999986 3567999999986 999999985
No 240
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.3e-30 Score=258.74 Aligned_cols=192 Identities=18% Similarity=0.172 Sum_probs=155.5
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC--c-eEEEEEEEcCcccch----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG--G-YITRNITVSGYPEKQ---- 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~--g-~~~G~i~~~g~~~~~---- 88 (531)
+..+.++++++.|+ ++.+|+++|+.+.|| |||||||+|+|+|..++ + ..+|+|.++|.+...
T Consensus 6 ~~~~~~~~~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 83 (261)
T PRK14263 6 PIVMDCKLDKIFYG--NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83 (261)
T ss_pred CceEEEEeEEEEeC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccc
Confidence 55678888888885 457899999888887 99999999999997542 1 257999999986521
Q ss_pred -hhhcceEEEEecCCCCCCCCcHHhHHH----------HHHHHHHHHHHhcCCchh----hh-----ccHHHHHHHHHHH
Q 042733 89 -ETFARILGYCEQNDIHSPHDTLYDFTH----------CLYMFIEEGMELVELNPF----RQ-----ALFEQRKRLTVAV 148 (531)
Q Consensus 89 -~~~~~~igyv~Q~~~~~~~ltv~e~~~----------~~~~~~~~~l~~l~l~~~----~~-----~~~GerqRv~iA~ 148 (531)
..+++.++|++|++.++ ..|+.|+.. .....+++.++.+++.+. .+ .+.|||||++|||
T Consensus 84 ~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~lar 162 (261)
T PRK14263 84 PVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIAR 162 (261)
T ss_pred hHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence 23467799999998876 589988732 122456778888887532 12 2339999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc-------cCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK-------QVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~-------~~G~~v~~G~~ 221 (531)
||+++|++++|||||+|||+.++.++.+.|++++ +++|+|++||+++ ++.+.||++++|+ ++|+++..|+.
T Consensus 163 al~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 163 AIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPT 240 (261)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCH
Confidence 9999999999999999999999999999999995 4789999999987 5778899999995 24999999875
No 241
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.9e-31 Score=280.30 Aligned_cols=190 Identities=23% Similarity=0.318 Sum_probs=159.8
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFA 92 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~ 92 (531)
++.++.+|+++.|+.++ ++++|+|+++.+| |||||||+++|+|..++ ..|+|.+||.+.. ...++
T Consensus 318 ~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng~~l~~l~~~~~~ 394 (559)
T COG4988 318 PIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDLSPEAWR 394 (559)
T ss_pred CceeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCccccccCHHHHH
Confidence 56777789999998544 8999999999988 99999999999998764 5799999998753 45789
Q ss_pred ceEEEEecCCCCCCCCcHHhHH-----HHHHHHHHHHHHhcCCchhhhc---------------cHHHHHHHHHHHHHhh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFT-----HCLYMFIEEGMELVELNPFRQA---------------LFEQRKRLTVAVEFVA 152 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~-----~~~~~~~~~~l~~l~l~~~~~~---------------~~GerqRv~iA~aL~~ 152 (531)
+.++||+|++.+++ -|++||. ...++.+.++++..++.+..+. +.||+|||++||||++
T Consensus 395 k~i~~v~Q~p~lf~-gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~ 473 (559)
T COG4988 395 KQISWVSQNPYLFA-GTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS 473 (559)
T ss_pred hHeeeeCCCCcccc-ccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC
Confidence 99999999987764 7899982 1223456667777776655443 2289999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+++++++||||++||.++.+.+.+.|.++++ ++|||++||++. ....+|+|++|++ |+++..|..+
T Consensus 474 ~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld~-G~l~~~g~~~ 539 (559)
T COG4988 474 PASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLDN-GRLVEQGTHE 539 (559)
T ss_pred CCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEecC-CceeccCCHH
Confidence 9999999999999999999999999999987 499999999976 3567899999996 9999999864
No 242
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=1.1e-30 Score=313.02 Aligned_cols=192 Identities=23% Similarity=0.338 Sum_probs=165.3
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFAR 93 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~ 93 (531)
...|+++||++.|+.+++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ...++
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P--tsG~I~i~G~dI~~~~~~~r~ 1003 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGKDIETNLDAVRQ 1003 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC--CceEEEECCEECcchHHHHhh
Confidence 3579999999999643567999999877766 99999999999998653 47999999987532 23567
Q ss_pred eEEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 94 ILGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
.+||++|++.+++.+||+|+. ...++.+++.++.+||.+..++.+ ||||||+||+||+.+|+++
T Consensus 1004 ~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVL 1083 (2272)
T TIGR01257 1004 SLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVV 1083 (2272)
T ss_pred cEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 899999999999999999972 122345788899999988777765 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|||||+|||+.+++.++++|++++ +|+|||++||+++ ++..++||+++|++ |+++..|++
T Consensus 1084 LLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~Gs~ 1144 (2272)
T TIGR01257 1084 VLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSGTP 1144 (2272)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 9999999999999999999999995 5999999999987 57778999999996 999999986
No 243
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.97 E-value=3.5e-31 Score=293.67 Aligned_cols=189 Identities=19% Similarity=0.241 Sum_probs=157.4
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++|++|+|+..++++|+|+|++++|| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++
T Consensus 340 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~~~~~~~~~~ 417 (582)
T PRK11176 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHDLRDYTLASLRN 417 (582)
T ss_pred CeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEEhhhcCHHHHHh
Confidence 369999999999755567999999999888 99999999999998663 4699999998754 345778
Q ss_pred eEEEEecCCCCCCCCcHHhHHH------HHHHHHHHHHHhcCCchhh-------hc---------cHHHHHHHHHHHHHh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH------CLYMFIEEGMELVELNPFR-------QA---------LFEQRKRLTVAVEFV 151 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~------~~~~~~~~~l~~l~l~~~~-------~~---------~~GerqRv~iA~aL~ 151 (531)
.++|++|++.+++ -|++||.. ...+.++++++..++.+.. |+ +.|||||++|||||+
T Consensus 418 ~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall 496 (582)
T PRK11176 418 QVALVSQNVHLFN-DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_pred hceEEccCceeec-chHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence 8999999988775 79999822 1234566667766655432 22 238999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|++++||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.||+|++|++ |+++..|+.
T Consensus 497 ~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~-g~i~e~g~~ 562 (582)
T PRK11176 497 RDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVED-GEIVERGTH 562 (582)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999999874 4799999999985 4677999999986 999999985
No 244
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.97 E-value=4.2e-31 Score=293.32 Aligned_cols=187 Identities=21% Similarity=0.288 Sum_probs=152.9
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++||++.|.. ++++|+|+|+.++|| |||||||+++|+|.. + .+|+|.++|.+.. ...+++
T Consensus 348 ~~i~~~~vsf~~~~-~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~i~~~~~~~lr~ 423 (588)
T PRK11174 348 VTIEAEDLEILSPD-GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIELRELDPESWRK 423 (588)
T ss_pred ceEEEEeeEEeccC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEecccCCHHHHHh
Confidence 46999999976653 467999999999999 999999999999987 3 3699999998754 356788
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhh-------hc---------cHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFR-------QA---------LFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~-------~~---------~~GerqRv~iA~aL~~ 152 (531)
.++||+|++.++. .|++||-. ...+.++++++..++.+.. |+ +.|||||++|||||++
T Consensus 424 ~i~~v~Q~~~LF~-~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~ 502 (588)
T PRK11174 424 HLSWVGQNPQLPH-GTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ 502 (588)
T ss_pred heEEecCCCcCCC-cCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999988765 69999821 1223455555555544322 22 2289999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++|+||||||+||+.+++.+.+.|+++. +++|+|+++|+++ ....+|+|++|++ |+++..|+.
T Consensus 503 ~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~-G~i~e~G~~ 567 (588)
T PRK11174 503 PCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD-GQIVQQGDY 567 (588)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC-CeEeecCCH
Confidence 999999999999999999999999999885 5899999999985 4567999999986 999999985
No 245
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.3e-31 Score=252.07 Aligned_cols=195 Identities=23% Similarity=0.351 Sum_probs=161.7
Q ss_pred cccccceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---
Q 042733 20 VLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK--- 87 (531)
Q Consensus 20 ~~~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~--- 87 (531)
..+..+.-|+++|++..|. ++.+|+|+|..+.|| ||||||||++++|..+++ +|.+.+.|....
T Consensus 24 ~~~~~~~li~l~~v~v~r~--gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps--sg~~~~~G~~~G~~~ 99 (257)
T COG1119 24 PIEINEPLIELKNVSVRRN--GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLGRRFGKGE 99 (257)
T ss_pred CCCCCcceEEecceEEEEC--CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC--CCceeeeeeeccCCc
Confidence 3344556799999999995 688999999988877 999999999999976543 577777776532
Q ss_pred -hhhhcceEEEEecC--CCCCCCCcHHhH----------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHH
Q 042733 88 -QETFARILGYCEQN--DIHSPHDTLYDF----------------THCLYMFIEEGMELVELNPFRQALF-----EQRKR 143 (531)
Q Consensus 88 -~~~~~~~igyv~Q~--~~~~~~ltv~e~----------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqR 143 (531)
..++|+.||+|.-+ ..+.+..+|+|. .+....++..+++.+|+.+.+++.. |||||
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rr 179 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRR 179 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHH
Confidence 15678999999643 233445566553 2345567888999999999888876 99999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM--GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 144 v~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
|-|||||+++|++||||||++|||...++++.+.|.+++.. +.++|++||+++ |+..++++++++++ |++++.|.
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~-g~v~~~g~ 256 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKE-GEVVAQGK 256 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeC-Cceeeccc
Confidence 99999999999999999999999999999999999999865 789999999987 78889999999996 99999874
No 246
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.97 E-value=8.8e-31 Score=258.18 Aligned_cols=187 Identities=23% Similarity=0.319 Sum_probs=142.7
Q ss_pred EEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcce
Q 042733 28 ISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~ 94 (531)
++++|+++.|+.. ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|++.++|.+.. ....++.
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~ 78 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP--TSGEILLDGVDIRDLNLRWLRSQ 78 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC--CCCEEEECCEehhhcCHHHHHhh
Confidence 3678888888532 235888888888777 99999999999998653 4689999997643 2234567
Q ss_pred EEEEecCCCCCCCCcHHhHHHH-----HHHHHHHHHHhcCCch-----------h-----hhccHHHHHHHHHHHHHhhC
Q 042733 95 LGYCEQNDIHSPHDTLYDFTHC-----LYMFIEEGMELVELNP-----------F-----RQALFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~~-----~~~~~~~~l~~l~l~~-----------~-----~~~~~GerqRv~iA~aL~~~ 153 (531)
++|++|++.+++ .|++|+... ......+.++..++.+ . .+.+.||||||+||++|+.+
T Consensus 79 i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~ 157 (238)
T cd03249 79 IGLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRN 157 (238)
T ss_pred EEEECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcC
Confidence 999999987765 699887210 0111222222222221 1 12234999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|++++|||||+|||+.+++.+.+.|++++ +|+|||++||+++ ++. .||++++|++ |++++.|+.
T Consensus 158 p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~l~~-G~i~~~~~~ 221 (238)
T cd03249 158 PKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAVLQN-GQVVEQGTH 221 (238)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999987 7999999999987 354 7999999996 999988874
No 247
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.5e-30 Score=258.06 Aligned_cols=191 Identities=17% Similarity=0.196 Sum_probs=153.7
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC--c-eEEEEEEEcCcccc-----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG--G-YITRNITVSGYPEK----- 87 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~--g-~~~G~i~~~g~~~~----- 87 (531)
...|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ + ..+|+|.++|.+..
T Consensus 14 ~~~l~~~~l~~~~~--~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 14 QQKSEVNKLNFYYG--GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred CceEEEEEEEEEEC--CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 44589999999996 357999999998887 99999999999997542 2 25799999886532
Q ss_pred --hhhhcceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCc----hhhhcc-----HHHHHHH
Q 042733 88 --QETFARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELN----PFRQAL-----FEQRKRL 144 (531)
Q Consensus 88 --~~~~~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~----~~~~~~-----~GerqRv 144 (531)
...+++.++|++|++.+++. |++|+... ..+.+++.++.+++. +..++. .|||||+
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 170 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRL 170 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHH
Confidence 12356779999999888875 99887211 123456667777663 222332 3999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 171 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 244 (265)
T PRK14252 171 CIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYM-GELIEFGAT 244 (265)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999875 689999999986 57788999999986 999998875
No 248
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=9.5e-31 Score=284.34 Aligned_cols=190 Identities=15% Similarity=0.169 Sum_probs=153.8
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~ 94 (531)
.|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|++.++|.+.. ....++.
T Consensus 3 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p--~~G~i~~~~~~~~~~~~~~~~~~ 78 (490)
T PRK10938 3 SLQISQGTFRLS--DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL--LSGERQSQFSHITRLSFEQLQKL 78 (490)
T ss_pred eEEEEeEEEEcC--CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCceEEECCcccccCCHHHHHHH
Confidence 467888888885 345788888777666 99999999999997653 4688888876532 1233456
Q ss_pred EEEEecCCCC--C------CCCcHHhHH---HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 95 LGYCEQNDIH--S------PHDTLYDFT---HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 95 igyv~Q~~~~--~------~~ltv~e~~---~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
++|++|++.. + ..+|++++. .....++++.++.+++.+..++.+ ||||||+||++|+.+|++|+
T Consensus 79 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (490)
T PRK10938 79 VSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLI 158 (490)
T ss_pred hceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 8999998542 1 146887752 123456788999999987766665 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||||+|||+.+++.+.+.|++++++|.|||++||+++ .+.+.||++++|++ |+++..|+++
T Consensus 159 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 220 (490)
T PRK10938 159 LDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLAD-CTLAETGERE 220 (490)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999888999999999987 57788999999986 9999998754
No 249
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=1.3e-30 Score=251.65 Aligned_cols=177 Identities=24% Similarity=0.306 Sum_probs=144.8
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGY 97 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igy 97 (531)
.++++|+++.|+ ++.+|+++|+.+.+| |||||||+++|+|..++ .+|+|.++|.+......++.++|
T Consensus 2 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~ 77 (207)
T PRK13539 2 MLEGEDLACVRG--GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP--AAGTIKLDGGDIDDPDVAEACHY 77 (207)
T ss_pred EEEEEeEEEEEC--CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeCcchhhHhhcEE
Confidence 468888888885 346888888888777 99999999999998653 46899999976432225667899
Q ss_pred EecCCCCCCCCcHHhHHHH-------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 042733 98 CEQNDIHSPHDTLYDFTHC-------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISG 165 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~~-------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsg 165 (531)
++|++.+++..|+.++... ....+++.++.+++.+..++.. |||||++||++|+.+|++++|||||+|
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 157 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA 157 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999888888999987321 1234778899999977665544 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 166 LDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 166 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
||+.++..+.+.|++++++|+|||++||+++ ++.. |+++.+.
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~ 199 (207)
T PRK13539 158 LDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLG 199 (207)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeec
Confidence 9999999999999998878999999999986 3443 8887764
No 250
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=1.6e-30 Score=284.58 Aligned_cols=191 Identities=23% Similarity=0.227 Sum_probs=151.1
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcC---------------
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSG--------------- 83 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g--------------- 83 (531)
|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+-.+.+|+|.++|
T Consensus 1 l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFD--GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEEC--CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 36778888884 346788888777666 9999999999999741002468888762
Q ss_pred --------ccc----------ch---hhhcceEEEEecC-CCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCC
Q 042733 84 --------YPE----------KQ---ETFARILGYCEQN-DIHSPHDTLYDFTH-----------CLYMFIEEGMELVEL 130 (531)
Q Consensus 84 --------~~~----------~~---~~~~~~igyv~Q~-~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l 130 (531)
.+. .. ..+++.++|++|+ +.+++.+|++|+.. ....++++.++.+|+
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 111 00 1235679999997 67788899988721 123467788999999
Q ss_pred chhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccC
Q 042733 131 NPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFD 204 (531)
Q Consensus 131 ~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d 204 (531)
.+..++.+ ||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.+.||
T Consensus 159 ~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d 237 (520)
T TIGR03269 159 SHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIEDLSD 237 (520)
T ss_pred hhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcC
Confidence 87666654 999999999999999999999999999999999999999999976 4999999999987 4667899
Q ss_pred eEEEEccCceeeecCCCC
Q 042733 205 ELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 205 ~v~lL~~~G~~v~~G~~~ 222 (531)
++++|++ |++++.|+++
T Consensus 238 ~i~~l~~-G~i~~~g~~~ 254 (520)
T TIGR03269 238 KAIWLEN-GEIKEEGTPD 254 (520)
T ss_pred EEEEEeC-CEEeeecCHH
Confidence 9999986 9999888753
No 251
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.97 E-value=1.2e-30 Score=287.01 Aligned_cols=190 Identities=25% Similarity=0.352 Sum_probs=153.2
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..++++|++++|+..++++|+|+|+.++|| |||||||+|+|+|..++ .+|++.++|.+... ..+++
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP--TSGSVRLDGADLKQWDRETFGK 392 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEehhhCCHHHHhh
Confidence 469999999999754568999999999988 99999999999998653 46899999987532 45678
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCC-----------chh-----hhccHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVEL-----------NPF-----RQALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l-----------~~~-----~~~~~GerqRv~iA~aL~~ 152 (531)
.++|++|++.+++. |++|+-. ...+.+.+.++..++ +.. .+.+.|||||++||||+++
T Consensus 393 ~i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 393 HIGYLPQDVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred heEEecCCcccccc-cHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 89999999888764 9998821 111223333333332 221 1223399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++++|||||+|||+.+++++.+.|+++..+|+|+|+++|+++ ..+.||++++|++ |+++..|+.
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~-G~i~~~g~~ 537 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQD-GRIARFGER 537 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEeeCCH
Confidence 99999999999999999999999999998767899999999986 3567999999986 999999975
No 252
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.97 E-value=7.6e-31 Score=290.11 Aligned_cols=189 Identities=22% Similarity=0.314 Sum_probs=159.4
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++|++++|+.+++++|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p--~~G~I~i~g~~i~~~~~~~~r~ 414 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP--QQGEILLNGQPIADYSEAALRQ 414 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEhhhCCHHHHHh
Confidence 469999999999754457999999999998 99999999999998653 4699999998754 345788
Q ss_pred eEEEEecCCCCCCCCcHHhHH-----HHHHHHHHHHHHhcCCchhhhc---------------cHHHHHHHHHHHHHhhC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFT-----HCLYMFIEEGMELVELNPFRQA---------------LFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~-----~~~~~~~~~~l~~l~l~~~~~~---------------~~GerqRv~iA~aL~~~ 153 (531)
.++|++|++.+++ .|++||. ....+.+.++++..++.+..+. +.|||||++|||+++++
T Consensus 415 ~i~~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~ 493 (574)
T PRK11160 415 AISVVSQRVHLFS-ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHD 493 (574)
T ss_pred heeEEcccchhhc-ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 8999999988775 6999983 1234557778888888765432 22899999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|++++|||||++||+.+++.+.+.|+++. +++|+|+++|+++. ...+|++++|++ |+++..|+.
T Consensus 494 ~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~i~~l~~-G~i~~~g~~ 557 (574)
T PRK11160 494 APLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDRICVMDN-GQIIEQGTH 557 (574)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCEEEEEeC-CeEEEeCCH
Confidence 99999999999999999999999999885 48999999999863 456999999986 999999985
No 253
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=1.9e-30 Score=284.45 Aligned_cols=194 Identities=15% Similarity=0.215 Sum_probs=152.2
Q ss_pred EEEEEeEEEEEeCC--CccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccch---h
Q 042733 27 YISLNEIVYSVDMP--QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEKQ---E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~--~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~~---~ 89 (531)
.++++|++++|+.+ .+.+|+++|+.+.+| |||||||+|+|+|..++ +..+|+|.++|.+... .
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 46777777777421 235777777666655 99999999999997653 1257999999976532 1
Q ss_pred ---hhc-ceEEEEecCCC--CCCCCcHHhHHH------------HHHHHHHHHHHhcCCchh---hhccH-----HHHHH
Q 042733 90 ---TFA-RILGYCEQNDI--HSPHDTLYDFTH------------CLYMFIEEGMELVELNPF---RQALF-----EQRKR 143 (531)
Q Consensus 90 ---~~~-~~igyv~Q~~~--~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~~---~~~~~-----GerqR 143 (531)
..+ +.+||++|++. +.+.+|+.++.. ....++++.++.+++.+. .++.+ |||||
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qr 164 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQR 164 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHH
Confidence 122 57999999864 566678877521 123457788999999652 34433 99999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 144 v~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+|||||+.+|++|+|||||+|||+.++..+.++|++++++ |.|||++||+++ .+...||++++|++ |++++.|+++
T Consensus 165 v~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~-G~i~~~g~~~ 242 (529)
T PRK15134 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQN-GRCVEQNRAA 242 (529)
T ss_pred HHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999999999999999875 899999999987 46778999999996 9999988764
No 254
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=2.3e-30 Score=283.27 Aligned_cols=192 Identities=20% Similarity=0.276 Sum_probs=157.1
Q ss_pred eEEEEEeEEEEEeC---CCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEc-Ccc---cch-
Q 042733 26 HYISLNEIVYSVDM---PQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVS-GYP---EKQ- 88 (531)
Q Consensus 26 ~~l~~~~ls~~~~~---~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~-g~~---~~~- 88 (531)
..|+++|++++|+. +.+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++ |.+ ...
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCcccccccc
Confidence 46999999999952 2346999999888777 99999999999998653 46899986 532 110
Q ss_pred -----hhhcceEEEEecCCCCCCCCcHHhHHHH----------HHHHHHHHHHhcCCch-----hhhccH-----HHHHH
Q 042733 89 -----ETFARILGYCEQNDIHSPHDTLYDFTHC----------LYMFIEEGMELVELNP-----FRQALF-----EQRKR 143 (531)
Q Consensus 89 -----~~~~~~igyv~Q~~~~~~~ltv~e~~~~----------~~~~~~~~l~~l~l~~-----~~~~~~-----GerqR 143 (531)
...++.+||++|++.+++.+||.|+... ....+++.++.+++.+ ..++.+ |||||
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr 435 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence 1234569999999888899999987321 2235677889999964 345544 99999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 144 v~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+||+||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++||+++ .+.+.||++++|++ |+++..|++
T Consensus 436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD-GKIVKIGDP 512 (520)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999999865 899999999987 57788999999986 999988875
No 255
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.97 E-value=6.3e-31 Score=297.14 Aligned_cols=189 Identities=24% Similarity=0.362 Sum_probs=157.2
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++|++|+|+..++++|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+.. ...+|+
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~l~~~~~~~lr~ 539 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGVDIRQIDPADLRR 539 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEhhhCCHHHHHh
Confidence 469999999999755567999999999988 99999999999998663 4699999998754 346788
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~ 152 (531)
.++||+|++.++. .|++|+-. ...+.+.++++..++.+..+ .+.|||||++|||||++
T Consensus 540 ~i~~v~Q~~~lf~-~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~ 618 (694)
T TIGR03375 540 NIGYVPQDPRLFY-GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR 618 (694)
T ss_pred ccEEECCChhhhh-hhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999998775 69999821 12344556666666544322 22389999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++++||||||+||+.+.+++.+.|+++. +++|+|++||+++ ....||+|++|++ |+++..|+.
T Consensus 619 ~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~-G~i~e~G~~ 683 (694)
T TIGR03375 619 DPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN-GRIVADGPK 683 (694)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC-CEEEeeCCH
Confidence 999999999999999999999999999876 4799999999986 4578999999986 999999985
No 256
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=2e-30 Score=250.26 Aligned_cols=185 Identities=17% Similarity=0.189 Sum_probs=145.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.++++|++++|+...+.+++++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ...++.
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA--EEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEhHHCCHHHHHhh
Confidence 57899999999643347999999988776 99999999999998653 46899999976432 234677
Q ss_pred EEEEecCCCCCCCCcHHhHHHH----HHHHHHHHHHhcCCch-hhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 042733 95 LGYCEQNDIHSPHDTLYDFTHC----LYMFIEEGMELVELNP-FRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDAR 169 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~~----~~~~~~~~l~~l~l~~-~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~ 169 (531)
++|++|++.+++ .|++|+... ....+.+.++ +.. ....+.|||||++|||+|+.+|++++|||||+|||+.
T Consensus 84 i~~v~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~l~---~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 159 (207)
T cd03369 84 LTIIPQDPTLFS-GTIRSNLDPFDEYSDEEIYGALR---VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYA 159 (207)
T ss_pred EEEEecCCcccC-ccHHHHhcccCCCCHHHHHHHhh---ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHH
Confidence 999999987776 599887321 1112233333 322 2333449999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 170 AATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 170 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++..+.+.|+++. +|+|+|++||+++. +. .+|++++|++ |+++..|++
T Consensus 160 ~~~~l~~~l~~~~-~~~tiii~th~~~~-~~-~~d~v~~l~~-g~i~~~g~~ 207 (207)
T cd03369 160 TDALIQKTIREEF-TNSTILTIAHRLRT-II-DYDKILVMDA-GEVKEYDHP 207 (207)
T ss_pred HHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEEEEEEC-CEEEecCCC
Confidence 9999999999985 48999999999873 44 4899999986 999888763
No 257
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.97 E-value=1e-30 Score=260.73 Aligned_cols=191 Identities=20% Similarity=0.224 Sum_probs=148.7
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
...++++|++++|+...+.+|+++|+.++|| |||||||+|+|+|..++ .+|++.++|.+... ...+
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI--FDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC--CCCeEEECCEEhhhCCHHHHh
Confidence 3458999999999643357999999999887 99999999999998653 46899999976532 3456
Q ss_pred ceEEEEecCCCCCCCCcHHhHHHH----HHHHHHHHHHhcCCch-----------hh-----hccHHHHHHHHHHHHHhh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTHC----LYMFIEEGMELVELNP-----------FR-----QALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~~----~~~~~~~~l~~l~l~~-----------~~-----~~~~GerqRv~iA~aL~~ 152 (531)
+.++|++|++.+++ .|++++... ....+.+.++..++.+ .. +.+.|||||++|||+|+.
T Consensus 95 ~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCcccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 78999999987765 588876210 0112233333333322 21 223399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|++++|||||+|||+.++..+.+.++++. ++.|||++||+++. +. .||++++|++ |+++..|+++
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~-~~dri~~l~~-G~i~~~g~~~ 239 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-IL-DADLVLVLSR-GILVECDTPE 239 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HH-hCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999999874 48999999999874 44 4999999996 9999988753
No 258
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.97 E-value=1.9e-30 Score=275.08 Aligned_cols=194 Identities=19% Similarity=0.294 Sum_probs=160.5
Q ss_pred EEEEEeEEEEEeCCCc--cccccEEEEEcCC---------CchHHHHHHHHhCCCCCc--eEEEEEEEcCcccc---hh-
Q 042733 27 YISLNEIVYSVDMPQI--GDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG--YITRNITVSGYPEK---QE- 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~--~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g--~~~G~i~~~g~~~~---~~- 89 (531)
.|+++||++.|..... .+++|||+.+.|| ||||||+.++|.|..+.+ ..+|+|.++|.+.. ..
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5788898888875433 4899999999888 999999999999976543 35799999997532 11
Q ss_pred ---hhcceEEEEecCCC--CCCCCcHHhH------------HHHHHHHHHHHHHhcCCchhhhc--cH-----HHHHHHH
Q 042733 90 ---TFARILGYCEQNDI--HSPHDTLYDF------------THCLYMFIEEGMELVELNPFRQA--LF-----EQRKRLT 145 (531)
Q Consensus 90 ---~~~~~igyv~Q~~~--~~~~ltv~e~------------~~~~~~~~~~~l~~l~l~~~~~~--~~-----GerqRv~ 145 (531)
...+.++|++|++. +-|-+|+.+. ..+..+++.+.++.+++.+.... .. ||||||.
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~ 164 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVM 164 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHH
Confidence 23468999999964 5566777654 23345678889999999776554 33 9999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||+||+.+|++|++||||++||+.++.+|+++|+++.+ .|.++|++|||+.. +.+.||||++|.+ |+++..|+++
T Consensus 165 iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~V-va~~aDrv~Vm~~-G~iVE~G~~~ 240 (539)
T COG1123 165 IAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYK-GEIVETGPTE 240 (539)
T ss_pred HHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHH-HHHhcCeEEEEEC-CEEEEecCHH
Confidence 99999999999999999999999999999999999986 49999999999974 7789999999996 9999999874
No 259
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.97 E-value=1.9e-30 Score=249.21 Aligned_cols=174 Identities=22% Similarity=0.244 Sum_probs=141.4
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh-hcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-FARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-~~~~ 94 (531)
++++|++++|+ ++.+|+|+|+.+++| |||||||+|+|+|..+..+.+|++.++|.+... .. .++.
T Consensus 1 l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVG--GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeC--CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 36788998885 356889999888877 999999999999973101256899999986532 12 2345
Q ss_pred EEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 042733 95 LGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTV 174 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i 174 (531)
++|++|++.+++..+++++. +.. ....+.|||||++|||+|+.+|++++|||||+|||+.++..+
T Consensus 79 i~~v~q~~~~~~~~~~~~~l-----------~~~----~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l 143 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL-----------RYV----NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLV 143 (200)
T ss_pred EEEeecChhhccCccHHHHH-----------hhc----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 99999998888888887643 110 023445999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCchHHHh-ccCeEEEEccCceeeecCC
Q 042733 175 IRMVRNTVDMGRTVVCTIHQPSIDIFY-SFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 175 ~~~L~~l~~~g~tvi~~~H~~~~~i~~-~~d~v~lL~~~G~~v~~G~ 220 (531)
.+.|++++++|+|||++||+++ .+.. .+|++++|++ |+++..|+
T Consensus 144 ~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~-G~i~~~~~ 188 (200)
T cd03217 144 AEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYD-GRIVKSGD 188 (200)
T ss_pred HHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEEC-CEEEEEcc
Confidence 9999999877899999999987 4555 6999999986 99999885
No 260
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.6e-30 Score=272.30 Aligned_cols=193 Identities=22% Similarity=0.350 Sum_probs=165.0
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhh
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETF 91 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~ 91 (531)
+..++++|++|+|+ ..++|++||+.+.|| |||||||+|+|+|..++ .+|+|.++|.+... ...
T Consensus 6 ~~ll~~~~i~K~Fg--gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p--~~G~I~~~G~~~~~~sp~~A~ 81 (500)
T COG1129 6 PPLLELRGISKSFG--GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP--DSGEILIDGKPVAFSSPRDAL 81 (500)
T ss_pred cceeeeecceEEcC--CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC--CCceEEECCEEccCCCHHHHH
Confidence 34578999999995 568999999998888 99999999999997653 57999999987531 234
Q ss_pred cceEEEEecCCCCCCCCcHHhH---------------HHHHHHHHHHHHHhcCCchhhhc-----cHHHHHHHHHHHHHh
Q 042733 92 ARILGYCEQNDIHSPHDTLYDF---------------THCLYMFIEEGMELVELNPFRQA-----LFEQRKRLTVAVEFV 151 (531)
Q Consensus 92 ~~~igyv~Q~~~~~~~ltv~e~---------------~~~~~~~~~~~l~~l~l~~~~~~-----~~GerqRv~iA~aL~ 151 (531)
..-|+.|.|+..+.|++||.|| .........++++.+++....++ .+||||-|+|||||.
T Consensus 82 ~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~ 161 (500)
T COG1129 82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALS 161 (500)
T ss_pred hCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHh
Confidence 5679999999999999999998 13345667788998887422333 448999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC-CC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL-GP 223 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~-~~ 223 (531)
.++++|+|||||+.|+....+.+++.+++++++|.+||++||.++ |+++.|||+.+|.+ |+.+..++. ++
T Consensus 162 ~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~~~~~~~~ 232 (500)
T COG1129 162 FDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVGTRPTAAE 232 (500)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEeeecccccC
Confidence 999999999999999999999999999999999999999999987 79999999999997 999998883 44
No 261
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.97 E-value=3e-30 Score=252.08 Aligned_cols=170 Identities=25% Similarity=0.374 Sum_probs=142.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCC--CCCcHHhHHH---------
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHS--PHDTLYDFTH--------- 115 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~--~~ltv~e~~~--------- 115 (531)
.+.+.+|+||||||||+|+|+|..++ .+|+|.++|.+.. ..++.++|++|++.++ ...|+.++..
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~ 82 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGLIPP--AKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGW 82 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcccccccc
Confidence 57899999999999999999997653 4689999998653 2456799999997653 3478877521
Q ss_pred ------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 042733 116 ------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM 184 (531)
Q Consensus 116 ------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~ 184 (531)
.....+.+.++.+++.+..++.+ |||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~ 162 (223)
T TIGR03771 83 LRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA 162 (223)
T ss_pred ccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc
Confidence 12245777889999987666655 9999999999999999999999999999999999999999999877
Q ss_pred CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 185 GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 185 g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
|+|+|++||+++ ++.+.||+++++ + |++++.|+.++
T Consensus 163 ~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~~ 198 (223)
T TIGR03771 163 GTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQQ 198 (223)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHH
Confidence 999999999987 577889999999 6 89999998653
No 262
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.4e-31 Score=272.97 Aligned_cols=190 Identities=22% Similarity=0.354 Sum_probs=154.9
Q ss_pred cceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhh
Q 042733 24 EPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETF 91 (531)
Q Consensus 24 ~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~ 91 (531)
.+-.|+++|+++.|+ +++++|+++|++++.| ||||||++|+|.+..+ .+|+|.++|.+.++ +.+
T Consensus 348 ~~~~I~F~dV~f~y~-~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~dik~~~~~Sl 423 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG-PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQDIKEVSLESL 423 (591)
T ss_pred CCCcEEEEeeEEEeC-CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCeeHhhhChHHh
Confidence 345699999999997 4556999999999888 9999999999999765 46999999998643 568
Q ss_pred cceEEEEecCCCCCCCCcHHhHH-----HHHHHHHHHHHHhcCCchhhhcc-------H---------HHHHHHHHHHHH
Q 042733 92 ARILGYCEQNDIHSPHDTLYDFT-----HCLYMFIEEGMELVELNPFRQAL-------F---------EQRKRLTVAVEF 150 (531)
Q Consensus 92 ~~~igyv~Q~~~~~~~ltv~e~~-----~~~~~~~~~~l~~l~l~~~~~~~-------~---------GerqRv~iA~aL 150 (531)
|+.|||||||..++ +.|+.++. ....+.+-++.+..++.+.-.+. + ||||||++|||+
T Consensus 424 R~~Ig~VPQd~~LF-ndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~ 502 (591)
T KOG0057|consen 424 RQSIGVVPQDSVLF-NDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAF 502 (591)
T ss_pred hhheeEeCCccccc-chhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHH
Confidence 89999999987665 67888771 11123344455555554432222 2 899999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+.||+|+++|||||.||..+.+++++.+.+. ..|+|+|++.|+.+ ....||+|+++++ |++...|+.+
T Consensus 503 lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~DkI~~l~n-G~v~e~gth~ 570 (591)
T KOG0057|consen 503 LKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDKIIVLDN-GTVKEYGTHS 570 (591)
T ss_pred hcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCEEEEEEC-CeeEEeccHH
Confidence 9999999999999999999999999999983 45899999999976 5778999999996 9999999853
No 263
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.8e-30 Score=283.22 Aligned_cols=196 Identities=18% Similarity=0.274 Sum_probs=159.3
Q ss_pred eEEEEEeEEEEEeC-CCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhh
Q 042733 26 HYISLNEIVYSVDM-PQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETF 91 (531)
Q Consensus 26 ~~l~~~~ls~~~~~-~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~ 91 (531)
..|+++|+++.|+. +++.+|+|+|+.+.+| |||||||+|+|+|..++ ..+|+|.++|.+... ...
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~ 336 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAI 336 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHH
Confidence 35899999998842 2346899999888877 99999999999997541 136899999875421 223
Q ss_pred cceEEEEecCC---CCCCCCcHHhHHH----------------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHH
Q 042733 92 ARILGYCEQND---IHSPHDTLYDFTH----------------CLYMFIEEGMELVELN-PFRQALF-----EQRKRLTV 146 (531)
Q Consensus 92 ~~~igyv~Q~~---~~~~~ltv~e~~~----------------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~i 146 (531)
++.++|++|++ .+++.+|+.|+.. .....+++.++.+++. +..++.+ ||||||+|
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~l 416 (506)
T PRK13549 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVL 416 (506)
T ss_pred HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHH
Confidence 55699999985 4677889988621 0123467789999996 4555544 99999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCC
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPS 224 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~ 224 (531)
|++|+.+|++|+|||||+|||+.+++.+.++|++++++|+|||++|||++ ++.+.||++++|++ |+++..|++++.
T Consensus 417 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~ 492 (506)
T PRK13549 417 AKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHNL 492 (506)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEeccccC
Confidence 99999999999999999999999999999999999888999999999987 57789999999986 999999887643
No 264
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.97 E-value=7.9e-31 Score=247.72 Aligned_cols=161 Identities=28% Similarity=0.404 Sum_probs=130.1
Q ss_pred EEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceEEE
Q 042733 30 LNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARILGY 97 (531)
Q Consensus 30 ~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~igy 97 (531)
++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++.++|
T Consensus 2 ~~~l~~~~~--~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 2 VENLSVGYG--GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP--SSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred eeEEEEEEC--CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCcCCHHHHHHHHhH
Confidence 567777774 245777777777766 99999999999998653 46899999976532 234556888
Q ss_pred EecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhcc-----HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 042733 98 CEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQAL-----FEQRKRLTVAVEFVANPSIISRDEPISGLDARAAT 172 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~-----~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~ 172 (531)
++| .++.+++.+..++. .|||||++|||+|+.+|++++|||||+|||+.++.
T Consensus 78 ~~q-----------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~ 134 (180)
T cd03214 78 VPQ-----------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQI 134 (180)
T ss_pred HHH-----------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 887 44555665544443 39999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 173 TVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 173 ~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
.+.+.|++++++ |.|+|++||+++ ++.+.||++++|++ |++++.|
T Consensus 135 ~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~~~ 180 (180)
T cd03214 135 ELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKD-GRIVAQG 180 (180)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999876 899999999987 46688999999986 8887654
No 265
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=7.4e-31 Score=236.40 Aligned_cols=185 Identities=22% Similarity=0.304 Sum_probs=148.9
Q ss_pred EEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hh
Q 042733 28 ISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ET 90 (531)
Q Consensus 28 l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~ 90 (531)
|++++++++++... ..||++|++.+.+| ||||||||-+++|+..+ .+|+|.+.|.+... ..
T Consensus 7 i~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred eehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchhhcCHHHHHH
Confidence 45556655554322 24666776666655 99999999999998653 46899999987531 12
Q ss_pred -hcceEEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhC
Q 042733 91 -FARILGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVAN 153 (531)
Q Consensus 91 -~~~~igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~ 153 (531)
..+.+|+|+|...+.|++|..|+. ........+.++.+||.+..+.++ ||+|||+||||++.+
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~ 164 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGR 164 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCC
Confidence 346899999999999999999981 122345778899999987766655 899999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeee
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS 217 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~ 217 (531)
|++||.||||-+||..+..++.++|-.+.+ .|.|.|++||||. +...|||.+-|.. |+++.
T Consensus 165 P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~~ 226 (228)
T COG4181 165 PDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLVE 226 (228)
T ss_pred CCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceecc
Confidence 999999999999999999999999999886 4999999999986 5678999999986 88864
No 266
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.97 E-value=3.1e-30 Score=252.15 Aligned_cols=177 Identities=27% Similarity=0.286 Sum_probs=135.8
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
+.++++++.|+ ++++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... .
T Consensus 23 l~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~--~------- 89 (224)
T cd03220 23 LGILGRKGEVG--EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP--DSGTVTVRGRVSSL--L------- 89 (224)
T ss_pred hhhhhhhhhcC--CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEchh--h-------
Confidence 44555555553 244666666555555 99999999999998653 47999999875321 1
Q ss_pred ecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 99 EQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEP 162 (531)
.+...+.+.+|++|+.. .....+++.++.+++.+..++.+ |||||++|||+|+.+|++++||||
T Consensus 90 ~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 169 (224)
T cd03220 90 GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEV 169 (224)
T ss_pred cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 11223456788888621 11234567788889887666655 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 163 ISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
|+|||+.+++.+.+.|++++++|+|||++||+++ ++...+|++++|++ |+++..|
T Consensus 170 ~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 170 LAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 9999999999999999999877899999999986 56778999999986 9988765
No 267
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.4e-30 Score=232.45 Aligned_cols=190 Identities=20% Similarity=0.290 Sum_probs=158.2
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCccc-------ch--
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPE-------KQ-- 88 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~-------~~-- 88 (531)
.|+++++++.|+ ..++|.|+++....| |||||||+|.|.=+..+ .+|+..+.|... ..
T Consensus 2 sirv~~in~~yg--~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p--~sg~l~ia~~~fd~s~~~~~k~i 77 (242)
T COG4161 2 SIQLNGINCFYG--AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred ceEEcccccccc--cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC--CCCeEEecccccccccCccHHHH
Confidence 468899999985 467888888765544 99999999999875321 246666655421 11
Q ss_pred hhhcceEEEEecCCCCCCCCcHHhH------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHh
Q 042733 89 ETFARILGYCEQNDIHSPHDTLYDF------------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFV 151 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~~~~~ltv~e~------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~ 151 (531)
..+|+.+|+|+|+..++|++||.|+ +.+.+.+..++++.+.|.+.+|+.. ||+|||+|||||+
T Consensus 78 ~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralm 157 (242)
T COG4161 78 RDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHh
Confidence 3467889999999999999999998 3344566788999999999999876 9999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|++|++||||+.|||+-..++.+++++++..|.|-+++||..+. ....+.+|+.|.+ |+++..|+.+
T Consensus 158 mkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v-a~k~as~vvyme~-g~ive~g~a~ 226 (242)
T COG4161 158 MEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV-ARKTASRVVYMEN-GHIVEQGDAS 226 (242)
T ss_pred cCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH-HHhhhhheEeeec-CeeEeecchh
Confidence 9999999999999999999999999999999999999999998763 3457899999986 9999999853
No 268
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=4.3e-30 Score=246.79 Aligned_cols=174 Identities=22% Similarity=0.216 Sum_probs=143.4
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILG 96 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ig 96 (531)
|+++|++++|+ ++++|+++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ..+++.++
T Consensus 2 l~~~~l~~~~~--~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYH--DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP--EKGEILFERQSIKKDLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeC--CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeeEEECCCccccCHHHHHhheE
Confidence 67889998885 356899999888777 99999999999998653 46899999986532 34567899
Q ss_pred EEecCCCCCCCCcHHhHHHH------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 042733 97 YCEQNDIHSPHDTLYDFTHC------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISG 165 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~~------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsg 165 (531)
|++|+..+++..|+.++... ....+++.++.+++.+..++.+ |||||++|||+++.+|++++|||||+|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~ 157 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVA 157 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 99999888889999987321 1235778889888876655544 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEE
Q 042733 166 LDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELF 207 (531)
Q Consensus 166 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~ 207 (531)
||+.++..+.+.|++++++|.|||++||++.. .+.+|..+
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 158 LDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred cCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence 99999999999999987779999999999753 45566543
No 269
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.97 E-value=2.7e-30 Score=247.77 Aligned_cols=173 Identities=22% Similarity=0.236 Sum_probs=139.2
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEEE
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILGY 97 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~igy 97 (531)
+++|+++.|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ..+++.++|
T Consensus 2 ~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (198)
T TIGR01189 2 AARNLACSRG--ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALAEQRDEPHRNILY 77 (198)
T ss_pred EEEEEEEEEC--CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccchHHhhhheEE
Confidence 5677777774 346777777777666 99999999999997653 46899999976432 234567999
Q ss_pred EecCCCCCCCCcHHhHHHH-------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 042733 98 CEQNDIHSPHDTLYDFTHC-------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISG 165 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~~-------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsg 165 (531)
++|++.+++.+|+.++... ....+++.++.+++.+..++.+ |||||++||++++.+|++++|||||+|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 157 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTA 157 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999888888999987321 1234677889999987766655 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEE
Q 042733 166 LDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFL 208 (531)
Q Consensus 166 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~l 208 (531)
||+.++..+.+.|++++++|.|+|++||++.. ..|++++.
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 158 LDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 99999999999999998789999999999752 24566654
No 270
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.4e-30 Score=287.00 Aligned_cols=192 Identities=14% Similarity=0.194 Sum_probs=154.2
Q ss_pred EEEEEeEEEEEeCC--CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCccc---------
Q 042733 27 YISLNEIVYSVDMP--QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPE--------- 86 (531)
Q Consensus 27 ~l~~~~ls~~~~~~--~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~--------- 86 (531)
.|+++|++++|+.. ..++|+|+|+.+.+| |||||||+|+|+|..++ .+|.|.++|...
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p--~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ--AGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCeEEEECCEEeccccccccc
Confidence 58999999999532 236899999888877 99999999999998643 357777766421
Q ss_pred ----ch---hhh-cceEEEEecCC--CCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch---hhhccH---
Q 042733 87 ----KQ---ETF-ARILGYCEQND--IHSPHDTLYDFTH------------CLYMFIEEGMELVELNP---FRQALF--- 138 (531)
Q Consensus 87 ----~~---~~~-~~~igyv~Q~~--~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~---~~~~~~--- 138 (531)
.. ... ++.+|||+|++ .+++.+||.|+.. ....++.++++.+|+.+ ..++.+
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L 169 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL 169 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence 11 112 24699999997 5778899998721 12346778899999953 344433
Q ss_pred --HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 139 --EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 139 --GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
||||||+||+||+.+|++|||||||+|||+.++.+++++|++++++ |+|||++||+++ .+.+.||++++|++ |++
T Consensus 170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adri~vl~~-G~i 247 (623)
T PRK10261 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADRVLVMYQ-GEA 247 (623)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEeeC-Cee
Confidence 9999999999999999999999999999999999999999999865 999999999987 57788999999996 999
Q ss_pred eecCCCC
Q 042733 216 ISVGPLG 222 (531)
Q Consensus 216 v~~G~~~ 222 (531)
+..|+++
T Consensus 248 ~~~g~~~ 254 (623)
T PRK10261 248 VETGSVE 254 (623)
T ss_pred cccCCHH
Confidence 9988764
No 271
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.5e-31 Score=275.58 Aligned_cols=189 Identities=21% Similarity=0.309 Sum_probs=160.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~ 94 (531)
.++++|++|+|+.++.++|+|+|+.+.+| |||||||++.|+|..++ .+|+|..+|.+.. +..+++.
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~--~~G~i~~~g~~~~~l~~~~~~e~ 413 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP--QQGSITLNGVEIASLDEQALRET 413 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC--CCCeeeECCcChhhCChhhHHHH
Confidence 68999999999987778999999999999 99999999999997653 4799999998753 3457788
Q ss_pred EEEEecCCCCCCCCcHHhHH-----HHHHHHHHHHHHhcCCchhhhccH----------------HHHHHHHHHHHHhhC
Q 042733 95 LGYCEQNDIHSPHDTLYDFT-----HCLYMFIEEGMELVELNPFRQALF----------------EQRKRLTVAVEFVAN 153 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~-----~~~~~~~~~~l~~l~l~~~~~~~~----------------GerqRv~iA~aL~~~ 153 (531)
+++++|...+ ..-|+++|- ....+.+.++++++||++...... |||||++|||+|++|
T Consensus 414 i~vl~Qr~hl-F~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~d 492 (573)
T COG4987 414 ISVLTQRVHL-FSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHD 492 (573)
T ss_pred HhhhccchHH-HHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcC
Confidence 9999998655 467999882 122345677888888887654442 899999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
.++++|||||.|||+.+.+++++.|.+..+ |+|+|++||+... .+.||+|++|++ |+++..|..+
T Consensus 493 apl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~-Gkiie~G~~~ 557 (573)
T COG4987 493 APLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDN-GKIIEEGTHA 557 (573)
T ss_pred CCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEEC-CeeeecCCHH
Confidence 999999999999999999999999988654 8999999999863 678999999996 9999999864
No 272
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=8.8e-30 Score=254.68 Aligned_cols=166 Identities=19% Similarity=0.213 Sum_probs=134.0
Q ss_pred cccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhH
Q 042733 43 GDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDF 113 (531)
Q Consensus 43 ~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~ 113 (531)
.+|+++|+.+.|| |||||||+++|+|..++ .+|+|.++|. ++++.|+..+.+.+|+.++
T Consensus 38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p--~~G~I~~~g~----------~~~~~~~~~~~~~~tv~en 105 (264)
T PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP--TVGKVDRNGE----------VSVIAISAGLSGQLTGIEN 105 (264)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCE----------EeEEecccCCCCCCcHHHH
Confidence 4666666666555 99999999999998653 4689988874 3566777666777888876
Q ss_pred HH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 042733 114 TH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRM 177 (531)
Q Consensus 114 ~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~ 177 (531)
.. .....++++++.+++.+..++.+ |||||++||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~ 185 (264)
T PRK13546 106 IEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDK 185 (264)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHH
Confidence 21 11223455677778877665544 999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 178 VRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 178 L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|++++++|+|||++||++. ++.+.||++++|++ |+++..|+.+
T Consensus 186 L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~ 228 (264)
T PRK13546 186 IYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GKLKDYGELD 228 (264)
T ss_pred HHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CEEEEeCCHH
Confidence 9999877999999999976 56778999999986 9999988753
No 273
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=2.7e-30 Score=283.29 Aligned_cols=191 Identities=19% Similarity=0.250 Sum_probs=157.6
Q ss_pred eEEEEEeEEEEEeC---------CCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc
Q 042733 26 HYISLNEIVYSVDM---------PQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK 87 (531)
Q Consensus 26 ~~l~~~~ls~~~~~---------~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~ 87 (531)
..++++|+++.|+. +++.+|+++|+.+.+| |||||||+|+|+|..+ .+|+|.++|.+..
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~ 350 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLH 350 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEcc
Confidence 35899999999952 1346999999888777 9999999999999864 3689999997642
Q ss_pred h---h---hhcceEEEEecCC--CCCCCCcHHhHHHH-------------HHHHHHHHHHhcCCc-hhhhccH-----HH
Q 042733 88 Q---E---TFARILGYCEQND--IHSPHDTLYDFTHC-------------LYMFIEEGMELVELN-PFRQALF-----EQ 140 (531)
Q Consensus 88 ~---~---~~~~~igyv~Q~~--~~~~~ltv~e~~~~-------------~~~~~~~~l~~l~l~-~~~~~~~-----Ge 140 (531)
. . .+++.+||++|++ .+++.+||.|+... ....+++.++.+++. +..++.+ ||
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 430 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQ 430 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHH
Confidence 1 1 2356799999996 47788999987211 124567789999996 4555544 99
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 141 RKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 141 rqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
||||+||++|+.+|++|+|||||+|||+.+++.+++.|++++++ |+|||++||+++ .+.+.||++++|++ |+++..|
T Consensus 431 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~ 508 (529)
T PRK15134 431 RQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQG 508 (529)
T ss_pred HHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEc
Confidence 99999999999999999999999999999999999999999875 899999999987 47788999999986 9999988
Q ss_pred CC
Q 042733 220 PL 221 (531)
Q Consensus 220 ~~ 221 (531)
++
T Consensus 509 ~~ 510 (529)
T PRK15134 509 DC 510 (529)
T ss_pred CH
Confidence 75
No 274
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.97 E-value=1.3e-30 Score=295.31 Aligned_cols=187 Identities=21% Similarity=0.296 Sum_probs=154.8
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++|++|+|+ .++++|+|+|+.++|| |||||||+|+|+|..++ .+|+|.+||.+.. ...+|+
T Consensus 472 ~~I~~~~vsf~y~-~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~~i~~~~~~~lr~ 548 (708)
T TIGR01193 472 GDIVINDVSYSYG-YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGFSLKDIDRHTLRQ 548 (708)
T ss_pred CcEEEEEEEEEcC-CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCEEHHHcCHHHHHH
Confidence 3689999999996 3457999999999988 99999999999998663 4699999998754 346788
Q ss_pred eEEEEecCCCCCCCCcHHhHHH------HHHHHHHHHHHhcCCchhhh-------c---------cHHHHHHHHHHHHHh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH------CLYMFIEEGMELVELNPFRQ-------A---------LFEQRKRLTVAVEFV 151 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~------~~~~~~~~~l~~l~l~~~~~-------~---------~~GerqRv~iA~aL~ 151 (531)
.+|||+|++.+++ -|++|+.. ...+.+.++++..++.+..+ + +.|||||++||||++
T Consensus 549 ~i~~v~Q~~~lf~-gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall 627 (708)
T TIGR01193 549 FINYLPQEPYIFS-GSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALL 627 (708)
T ss_pred heEEEecCceehh-HHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999988775 59999832 11234556666666544322 2 228999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|++|+||||||+||+.+.+.+.+.|+++ +|+|+|+++|+++ ....+|++++|++ |+++..|+.
T Consensus 628 ~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~-G~i~~~G~~ 692 (708)
T TIGR01193 628 TDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH-GKIIEQGSH 692 (708)
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999875 4799999999986 4578999999986 999999985
No 275
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.6e-30 Score=282.17 Aligned_cols=188 Identities=16% Similarity=0.249 Sum_probs=154.7
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~ 92 (531)
..++++|+++.+. .+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...+
T Consensus 264 ~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~ 337 (510)
T PRK09700 264 TVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVK 337 (510)
T ss_pred cEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHH
Confidence 3689999997642 3789888777776 99999999999997653 46899999975421 2245
Q ss_pred ceEEEEecC---CCCCCCCcHHhHHH--------------------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHH
Q 042733 93 RILGYCEQN---DIHSPHDTLYDFTH--------------------CLYMFIEEGMELVELN-PFRQALF-----EQRKR 143 (531)
Q Consensus 93 ~~igyv~Q~---~~~~~~ltv~e~~~--------------------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqR 143 (531)
+.+||++|+ ..+++.+|+.|+.. .....++++++.+++. +..++.+ |||||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 417 (510)
T PRK09700 338 KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQK 417 (510)
T ss_pred CCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHH
Confidence 679999998 45788899988721 0113467789999996 5566654 99999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 144 v~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++|||++ ++...||++++|++ |+++..++.
T Consensus 418 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 418 VLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred HHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 99999999999999999999999999999999999999888999999999987 57788999999986 999988765
No 276
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.97 E-value=3.1e-30 Score=252.33 Aligned_cols=183 Identities=20% Similarity=0.287 Sum_probs=144.7
Q ss_pred eEEEEEeEEEEEeCCC-ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 26 HYISLNEIVYSVDMPQ-IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~-~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
..++++|++++|+... ..+|+++|+.+.+| |||||||+++|+|..++ .+|++.++|.+... ...+
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP--QGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcEEEECCCchHHcCHHHHH
Confidence 4579999999996422 36999999888877 99999999999998653 46899999976432 2345
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH---------HHH-----HHHHHHHHhc--CCchhhhccH-----HHHHHHHHHHHHh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH---------CLY-----MFIEEGMELV--ELNPFRQALF-----EQRKRLTVAVEFV 151 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~---------~~~-----~~~~~~l~~l--~l~~~~~~~~-----GerqRv~iA~aL~ 151 (531)
+.++|++|++.+++ .|++|+.. ... ..+++.++.+ |+.+..+..+ ||||||+||++|+
T Consensus 88 ~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 88 SKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred hhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 67999999987765 58887621 000 1134556666 6665444433 9999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++ ..||++++|++ |++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~-g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQILVLDG-GRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEecC-CcC
Confidence 99999999999999999999999999999865 689999999987 45 45999999986 763
No 277
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.3e-30 Score=253.71 Aligned_cols=186 Identities=22% Similarity=0.323 Sum_probs=141.7
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcceE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~i 95 (531)
++++|++++|+. .+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++.+
T Consensus 1 l~~~~l~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~v~~~g~~~~~~~~~~~~~~i 77 (236)
T cd03253 1 IEFENVTFAYDP-GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV--SSGSILIDGQDIREVTLDSLRRAI 77 (236)
T ss_pred CEEEEEEEEeCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEEECCEEhhhCCHHHHHhhE
Confidence 367788888742 245788888777766 99999999999998653 4689999997643 22356679
Q ss_pred EEEecCCCCCCCCcHHhHHHH-----HHHHHHHHHHhcCC-----------chh-----hhccHHHHHHHHHHHHHhhCC
Q 042733 96 GYCEQNDIHSPHDTLYDFTHC-----LYMFIEEGMELVEL-----------NPF-----RQALFEQRKRLTVAVEFVANP 154 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~~-----~~~~~~~~l~~l~l-----------~~~-----~~~~~GerqRv~iA~aL~~~p 154 (531)
+|++|+..+++ .|+.|+... ......+.++..++ ... .+.+.|||||++||++|+.+|
T Consensus 78 ~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p 156 (236)
T cd03253 78 GVVPQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNP 156 (236)
T ss_pred EEECCCChhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999987775 699887211 01112222232232 221 123349999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++++|||||+|||+.++..+.+.|+++++ |+|||++||+++ .+ ..||++++|++ |+++..|+.
T Consensus 157 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~l~~-g~i~~~~~~ 219 (236)
T cd03253 157 PILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIVLKD-GRIVERGTH 219 (236)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEEC-CEEEeeCCH
Confidence 99999999999999999999999999877 999999999987 34 45999999996 999988764
No 278
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=5.3e-30 Score=272.71 Aligned_cols=202 Identities=19% Similarity=0.223 Sum_probs=162.2
Q ss_pred CchhhhhhhcccCCCccccccceEEEEEeEEEEEeCCC-ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc
Q 042733 4 MTEAAIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQ-IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG 73 (531)
Q Consensus 4 m~~~~i~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~-~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g 73 (531)
|+ ..++++|++++.... ...+++++||++.++.+. +.+|+|+|+.+.+| |||||||+|+|+|..++
T Consensus 1 m~-~~i~~~n~tk~y~~~--~~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P- 76 (549)
T PRK13545 1 MN-YKVKFEHVTKKYKMY--NKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP- 76 (549)
T ss_pred CC-ceEEEEeeeeecccc--ccceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC-
Confidence 66 468999999985533 233689999999986432 36899999888877 99999999999998653
Q ss_pred eEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH----
Q 042733 74 YITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF---- 138 (531)
Q Consensus 74 ~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~---- 138 (531)
.+|+|.++|.+. ++.+...+.+.+|++|+.. ...+.++++++.+++.+..++.+
T Consensus 77 -~sGeI~I~G~~~----------~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LS 145 (549)
T PRK13545 77 -NKGTVDIKGSAA----------LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYS 145 (549)
T ss_pred -CceEEEECCEee----------eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCC
Confidence 468999988541 1222334556678888621 12234567888899987766655
Q ss_pred -HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeee
Q 042733 139 -EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS 217 (531)
Q Consensus 139 -GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~ 217 (531)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.||++++|++ |+++.
T Consensus 146 GGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~ 223 (549)
T PRK13545 146 SGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKE 223 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999878999999999987 57788999999986 99999
Q ss_pred cCCCC
Q 042733 218 VGPLG 222 (531)
Q Consensus 218 ~G~~~ 222 (531)
.|+++
T Consensus 224 ~G~~~ 228 (549)
T PRK13545 224 YGDIK 228 (549)
T ss_pred ECCHH
Confidence 99864
No 279
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.97 E-value=4.5e-30 Score=250.81 Aligned_cols=180 Identities=18% Similarity=0.232 Sum_probs=141.5
Q ss_pred EEEEeEEEEEeCC-----CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcC--c--ccc--
Q 042733 28 ISLNEIVYSVDMP-----QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSG--Y--PEK-- 87 (531)
Q Consensus 28 l~~~~ls~~~~~~-----~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g--~--~~~-- 87 (531)
++++|++++|+.. +..+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++| . +..
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~~~~~~~~ 79 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGAWVDLAQA 79 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCCccchhhc
Confidence 5788888888521 135888888887766 99999999999998653 358898873 2 221
Q ss_pred -hh---h-hcceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCch-hhhccH-----HHHHHHH
Q 042733 88 -QE---T-FARILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNP-FRQALF-----EQRKRLT 145 (531)
Q Consensus 88 -~~---~-~~~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~ 145 (531)
.. . .++.++|++|++.+++.+|+.|+.. ...+.+.+.++.+++.+ ..+..+ |||||++
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~ 159 (224)
T TIGR02324 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVN 159 (224)
T ss_pred CHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHH
Confidence 11 1 2356999999998999999988721 12345667888889865 334433 9999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
||++|+.+|++++|||||+|||+.+++.+.+.|++++++|+|||++||+++ .+...||+++.+.
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 160 IARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 999999999999999999999999999999999999877999999999965 4556899998763
No 280
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.97 E-value=4.2e-30 Score=238.95 Aligned_cols=149 Identities=23% Similarity=0.354 Sum_probs=127.6
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~~ 94 (531)
++++|++++|+ ++++++++|+.+.|| |||||||+|+|+|..++ .+|++.++|.+... ...++.
T Consensus 1 l~~~~l~~~~~--~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~~~~~~~ 76 (163)
T cd03216 1 LELRGITKRFG--GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP--DSGEILVDGKEVSFASPRDARRAG 76 (163)
T ss_pred CEEEEEEEEEC--CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEECCcCCHHHHHhcC
Confidence 46889999885 346899999888887 99999999999998653 46899999976532 224567
Q ss_pred EEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 042733 95 LGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTV 174 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i 174 (531)
++|++| .+.|||||++|||+++.+|++++|||||+|||+.+++.+
T Consensus 77 i~~~~q-----------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l 121 (163)
T cd03216 77 IAMVYQ-----------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERL 121 (163)
T ss_pred eEEEEe-----------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHH
Confidence 999998 334999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeee
Q 042733 175 IRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS 217 (531)
Q Consensus 175 ~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~ 217 (531)
.+.|++++++|.|+|++||++. ++.+.||+++++++ |++++
T Consensus 122 ~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~ 162 (163)
T cd03216 122 FKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRD-GRVVG 162 (163)
T ss_pred HHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEe
Confidence 9999999877999999999976 46778999999986 88864
No 281
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-29 Score=259.15 Aligned_cols=191 Identities=19% Similarity=0.212 Sum_probs=152.6
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccch----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEKQ---- 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~~---- 88 (531)
+..|+++|++++|+ ++.+|+++|+.+.+| |||||||+++|+|..+. ...+|+|.++|.+...
T Consensus 43 ~~~l~i~nl~~~~~--~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYG--DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeC--CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 34689999999995 357999999988887 99999999999997531 1357999999976431
Q ss_pred -hhhcceEEEEecCCCCCCCCcHHhHHHH------------------------HHHHHHHHHHhcCCc----hhhhc---
Q 042733 89 -ETFARILGYCEQNDIHSPHDTLYDFTHC------------------------LYMFIEEGMELVELN----PFRQA--- 136 (531)
Q Consensus 89 -~~~~~~igyv~Q~~~~~~~ltv~e~~~~------------------------~~~~~~~~l~~l~l~----~~~~~--- 136 (531)
...++.++|++|++.+++ .|++|+... ....++++++.+++. +..+.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 199 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL 199 (305)
T ss_pred HHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccc
Confidence 234568999999988776 499887221 123456677777763 22233
Q ss_pred --cHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEE-EEccCc
Q 042733 137 --LFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELF-LLKQVG 213 (531)
Q Consensus 137 --~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~-lL~~~G 213 (531)
+.|||||++||++|+++|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.||+++ +|++ |
T Consensus 200 ~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~~l~~-G 276 (305)
T PRK14264 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAVFLTG-G 276 (305)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEEEecC-C
Confidence 23999999999999999999999999999999999999999999976 489999999987 4677899974 6675 9
Q ss_pred eeeecCCC
Q 042733 214 QEISVGPL 221 (531)
Q Consensus 214 ~~v~~G~~ 221 (531)
+++..|++
T Consensus 277 ~i~~~g~~ 284 (305)
T PRK14264 277 ELVEYDDT 284 (305)
T ss_pred EEEEeCCH
Confidence 99999875
No 282
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.97 E-value=2.2e-30 Score=286.71 Aligned_cols=189 Identities=21% Similarity=0.280 Sum_probs=156.8
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++|++++|+..++++|+|+|+.+++| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++
T Consensus 329 ~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~--~~G~I~i~g~~i~~~~~~~~~~ 406 (571)
T TIGR02203 329 GDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP--DSGQILLDGHDLADYTLASLRR 406 (571)
T ss_pred CeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEeHHhcCHHHHHh
Confidence 369999999999754567999999999988 99999999999998653 3689999998753 345778
Q ss_pred eEEEEecCCCCCCCCcHHhHH------HHHHHHHHHHHHhcCCchhhhc----------------cHHHHHHHHHHHHHh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFT------HCLYMFIEEGMELVELNPFRQA----------------LFEQRKRLTVAVEFV 151 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~------~~~~~~~~~~l~~l~l~~~~~~----------------~~GerqRv~iA~aL~ 151 (531)
.++|++|++.++ ..|++|+- +...+.++++++..++.+..++ +.|||||++|||+++
T Consensus 407 ~i~~v~Q~~~lf-~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall 485 (571)
T TIGR02203 407 QVALVSQDVVLF-NDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALL 485 (571)
T ss_pred hceEEccCcccc-cccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 899999998766 56999982 1234556667777766543222 239999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ....||+|+.+++ |+++..|+.
T Consensus 486 ~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~-g~i~~~g~~ 551 (571)
T TIGR02203 486 KDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDD-GRIVERGTH 551 (571)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeC-CEEEeeCCH
Confidence 9999999999999999999999999999874 4799999999985 5678999999986 999988875
No 283
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=5e-30 Score=240.25 Aligned_cols=159 Identities=25% Similarity=0.398 Sum_probs=130.1
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~i 95 (531)
++++|++++|+..+..+++++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ...++.+
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i 78 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP--TSGEILIDGVDLRDLDLESLRKNI 78 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEhhhcCHHHHHhhE
Confidence 3678888888532236888888888776 99999999999998653 46899999976432 2345679
Q ss_pred EEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 042733 96 GYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVI 175 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~ 175 (531)
+|++|++.+++ .|+.|+. .+.|||||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 79 ~~~~~~~~~~~-~t~~e~l---------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~ 136 (171)
T cd03228 79 AYVPQDPFLFS-GTIRENI---------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALIL 136 (171)
T ss_pred EEEcCCchhcc-chHHHHh---------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHH
Confidence 99999987665 5776542 3459999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 176 RMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 176 ~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
+.|+++++ ++|+|++||+++ ++.. ||++++|++ |+
T Consensus 137 ~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~-g~ 171 (171)
T cd03228 137 EALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDD-GR 171 (171)
T ss_pred HHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcC-CC
Confidence 99999864 799999999987 4555 999999985 64
No 284
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=5.4e-30 Score=279.10 Aligned_cols=194 Identities=15% Similarity=0.247 Sum_probs=157.3
Q ss_pred eEEEEEeEEEEEeC-CCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhh
Q 042733 26 HYISLNEIVYSVDM-PQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETF 91 (531)
Q Consensus 26 ~~l~~~~ls~~~~~-~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~ 91 (531)
..|+++|++++|+. +++.+|+|+|+.+.+| |||||||+|+|+|..++ ..+|+|.++|.+... ...
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~ 334 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAI 334 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHH
Confidence 36899999998842 1346899999888777 99999999999998642 136899999976431 234
Q ss_pred cceEEEEecCC---CCCCCCcHHhHHH----------------HHHHHHHHHHHhcCCch-hhhccH-----HHHHHHHH
Q 042733 92 ARILGYCEQND---IHSPHDTLYDFTH----------------CLYMFIEEGMELVELNP-FRQALF-----EQRKRLTV 146 (531)
Q Consensus 92 ~~~igyv~Q~~---~~~~~ltv~e~~~----------------~~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~i 146 (531)
++.+||++|+. .+++.+|++++.. .....+++.++.+++.+ ..++.+ ||||||+|
T Consensus 335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l 414 (500)
T TIGR02633 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVL 414 (500)
T ss_pred hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHH
Confidence 56799999995 4788889988611 01234677889999863 445443 99999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|++|+.+|++|+|||||+|||+.+++.+++.|++++++|.|||++|||++ ++.+.||++++|.+ |+++..++.+
T Consensus 415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 488 (500)
T TIGR02633 415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVNH 488 (500)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 99999999999999999999999999999999999888999999999987 57789999999986 9999877653
No 285
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.97 E-value=3.6e-30 Score=285.77 Aligned_cols=188 Identities=21% Similarity=0.302 Sum_probs=153.1
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++|++|+|+. ++.+|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++
T Consensus 333 ~~I~~~~vsf~y~~-~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p--~~G~I~i~g~~i~~~~~~~~r~ 409 (588)
T PRK13657 333 GAVEFDDVSFSYDN-SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP--QSGRILIDGTDIRTVTRASLRR 409 (588)
T ss_pred CeEEEEEEEEEeCC-CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEEhhhCCHHHHHh
Confidence 36999999999973 356999999999998 99999999999998664 4689999998754 345788
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhh-------h---------ccHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFR-------Q---------ALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~-------~---------~~~GerqRv~iA~aL~~ 152 (531)
.++|++|++.++. .|++|+-. ...+.+.++++..++.+.. | .+.|||||++|||+|++
T Consensus 410 ~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~ 488 (588)
T PRK13657 410 NIAVVFQDAGLFN-RSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLK 488 (588)
T ss_pred heEEEecCccccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 8999999988774 69998821 1123344555555543322 1 22399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|+++.|++ |+++..|+.
T Consensus 489 ~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~-G~i~~~g~~ 553 (588)
T PRK13657 489 DPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDN-GRVVESGSF 553 (588)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999998875 4799999999985 4678999999986 999998874
No 286
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.97 E-value=3.7e-30 Score=290.83 Aligned_cols=189 Identities=24% Similarity=0.334 Sum_probs=154.7
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++|++|+|+..++.+|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+.. ...+|+
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p--~~G~I~idg~~i~~~~~~~~r~ 531 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP--QHGQVLVDGVDLAIADPAWLRR 531 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEehhhCCHHHHHH
Confidence 469999999999755567999999999988 99999999999998653 4699999998754 345788
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~ 152 (531)
.++||+|++.+++ .|++|+-. ...+.+.++++..++.+..+ .+.|||||++|||||++
T Consensus 532 ~i~~v~q~~~lf~-~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~ 610 (694)
T TIGR01846 532 QMGVVLQENVLFS-RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG 610 (694)
T ss_pred hCeEEccCCeehh-hhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence 8999999987765 69999821 11233445555555443321 22399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++++|||||++||+.++..+.+.|+++. +++|+|++||+++ ....||++++|++ |+++..|+.
T Consensus 611 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~-G~i~~~g~~ 675 (694)
T TIGR01846 611 NPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEK-GQIAESGRH 675 (694)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeC-CEEEEeCCH
Confidence 999999999999999999999999999884 5899999999986 3456999999986 999999985
No 287
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.5e-31 Score=241.88 Aligned_cols=185 Identities=22% Similarity=0.385 Sum_probs=158.4
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcceEEEEecCCCCC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARILGYCEQNDIHS 105 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~igyv~Q~~~~~ 105 (531)
.++++|...+. .+++-.+|||||||||||.+++.+.+ ..+|+|.++|.+.. ...+.+.++.+-|+....
T Consensus 16 vl~~isl~i~~------g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~ 87 (252)
T COG4604 16 VLDDVSLDIPK------GGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHIN 87 (252)
T ss_pred eeccceeeecC------CceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhh
Confidence 45555555542 24566677889999999999999765 35799999998754 245677889999999888
Q ss_pred CCCcHHhH-------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 042733 106 PHDTLYDF-------------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLD 167 (531)
Q Consensus 106 ~~ltv~e~-------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD 167 (531)
..+||+|. ..+.+..++++++.++|++..++.. |||||.-||+.++++.+.++||||.++||
T Consensus 88 ~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLD 167 (252)
T COG4604 88 SRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167 (252)
T ss_pred heeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccc
Confidence 99999997 3556778999999999999888876 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 168 ARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 168 ~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
...+.++++.|++++++ |+||+++.||.+. ...+.|+++-|++ |+++..|++++
T Consensus 168 mkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~e 222 (252)
T COG4604 168 MKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPDE 222 (252)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHHH
Confidence 99999999999999986 9999999999985 4557899999996 99999999875
No 288
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.97 E-value=4.4e-30 Score=290.45 Aligned_cols=187 Identities=21% Similarity=0.300 Sum_probs=151.7
Q ss_pred eEEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 26 HYISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
..++++||+|+|+.. ++++|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+..+ ..++
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i~~~~~~~lr 554 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGVPLVQYDHHYLH 554 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEEHHhcCHHHHH
Confidence 368999999999743 457999999999998 99999999999998663 46999999987643 4577
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhh-------c---------cHHHHHHHHHHHHHh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQ-------A---------LFEQRKRLTVAVEFV 151 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~-------~---------~~GerqRv~iA~aL~ 151 (531)
+.++||+|++.++. .|++||.. ...+.+.++++..++.+..+ + +.|||||++||||++
T Consensus 555 ~~i~~v~Q~~~lF~-gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl 633 (711)
T TIGR00958 555 RQVALVGQEPVLFS-GSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633 (711)
T ss_pred hhceEEecCccccc-cCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence 88999999988764 79999821 12344556666666544322 1 228999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|++++||||||+||+.+.+.+.+ .. ..+++|+|+++|+++ ....+|+|++|++ |+++..|+.
T Consensus 634 ~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~-G~ive~Gt~ 697 (711)
T TIGR00958 634 RKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKK-GSVVEMGTH 697 (711)
T ss_pred cCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEEC-CEEEEeeCH
Confidence 9999999999999999999999988 22 235899999999986 4567999999986 999999985
No 289
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.97 E-value=6.2e-30 Score=282.74 Aligned_cols=190 Identities=24% Similarity=0.352 Sum_probs=153.2
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFA 92 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~ 92 (531)
...++++|++|.|+. ++++|+|+|+.++|| |||||||+|.|.|..++ .+|+|.++|.+.+ ...+|
T Consensus 326 ~~~I~f~~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~dI~~i~~~~lr 402 (567)
T COG1132 326 IGSIEFENVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGIDIRDISLDSLR 402 (567)
T ss_pred CCeEEEEEEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCEehhhcCHHHHH
Confidence 345899999999963 568999999999988 99999999999998764 4789999998764 35678
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchh-------hhc---------cHHHHHHHHHHHHHh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPF-------RQA---------LFEQRKRLTVAVEFV 151 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~-------~~~---------~~GerqRv~iA~aL~ 151 (531)
+.++||+|++.++. -|+++|-. ...+.+.++++..++.+. .|+ +.|||||++||||++
T Consensus 403 ~~I~~V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall 481 (567)
T COG1132 403 KRIGIVSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL 481 (567)
T ss_pred HhccEEcccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHh
Confidence 99999999988876 89999811 111233333333322221 122 238999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|++|+||||||+||+.+...+.+.++++. +++|+|+++|+++ .+ ..+|+|++|++ |+++..|+.+
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti-~~aD~IiVl~~-G~i~e~G~h~ 548 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-TI-KNADRIIVLDN-GRIVERGTHE 548 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HH-HhCCEEEEEEC-CEEEEecCHH
Confidence 9999999999999999999999999999877 5789999999986 34 44999999996 9999999863
No 290
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.97 E-value=9.6e-30 Score=281.16 Aligned_cols=189 Identities=20% Similarity=0.281 Sum_probs=153.4
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..++++|++++|+..++.+|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+..+ ..+++
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p--~~G~i~~~g~~~~~~~~~~~~~ 389 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV--SEGDIRFHDIPLTKLQLDSWRS 389 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEEECCEEHhhCCHHHHHh
Confidence 368999999999754567999999998888 99999999999997653 46899999987532 45678
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhh----------------hccHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFR----------------QALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~----------------~~~~GerqRv~iA~aL~~ 152 (531)
.++|++|++.+++ .|++|+.. ...+.+++.++..++.+.. +.+.|||||++|||||++
T Consensus 390 ~i~~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~ 468 (569)
T PRK10789 390 RLAVVSQTPFLFS-DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL 468 (569)
T ss_pred heEEEccCCeecc-ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 8999999988876 59998821 1123344555555543221 122399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++++|||||++||+.+++.+.+.|+++. +|+|+|+++|+++ ....+|++++|++ |+++..|+.
T Consensus 469 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~-G~i~~~g~~ 533 (569)
T PRK10789 469 NAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQH-GHIAQRGNH 533 (569)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeC-CEEEEecCH
Confidence 999999999999999999999999999875 5899999999986 3567999999986 999999985
No 291
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.7e-30 Score=250.06 Aligned_cols=184 Identities=23% Similarity=0.308 Sum_probs=146.6
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc--hhhhcceEEEEecC-CCCC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK--QETFARILGYCEQN-DIHS 105 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~--~~~~~~~igyv~Q~-~~~~ 105 (531)
.++|+|+..+. ..+.|.+|||||||||+||+|+|...+ .+|.+.++|...- +..+-+.+++|.-+ ..+.
T Consensus 39 AVqdisf~IP~------G~ivgflGaNGAGKSTtLKmLTGll~p--~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~ 110 (325)
T COG4586 39 AVQDISFEIPK------GEIVGFLGANGAGKSTTLKMLTGLLLP--TSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLW 110 (325)
T ss_pred hhheeeeecCC------CcEEEEEcCCCCcchhhHHHHhCcccc--CCCeEEecCcCcchhHHHHHHHHHHHhhhhheee
Confidence 67788888763 356888999999999999999997653 4689999998642 22344556666432 2232
Q ss_pred CCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 042733 106 PHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDAR 169 (531)
Q Consensus 106 ~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~ 169 (531)
..+.+.+. ....+++.+...+.+++++..+..+ |||.|+.||.+|+++|+||||||||-|||..
T Consensus 111 Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~ 190 (325)
T COG4586 111 WDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVN 190 (325)
T ss_pred eechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchh
Confidence 22333332 2344567778888889886665554 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 170 AATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 170 ~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++..+.+.|++..+ ++.||+++||+.+ ++..+||||++++. |+++|.|+.+
T Consensus 191 aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~-Gqlv~dg~l~ 242 (325)
T COG4586 191 AQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTLA 242 (325)
T ss_pred HHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeC-CcEeecccHH
Confidence 99999999999986 5999999999998 79999999999996 9999999863
No 292
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=1.6e-29 Score=243.46 Aligned_cols=171 Identities=20% Similarity=0.288 Sum_probs=130.7
Q ss_pred EEEEeEEEEEeCCC---ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceE
Q 042733 28 ISLNEIVYSVDMPQ---IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~---~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~i 95 (531)
++++||+++|+... +.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++| .+
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~--~~G~i~~~g----------~i 68 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK--LSGSVSVPG----------SI 68 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCCeEEEcC----------EE
Confidence 36788888886322 36888888888777 99999999999997653 468999988 58
Q ss_pred EEEecCCCCCCCCcHHhHHH----HHHHHHHHHHHhcCCchh----------------hhccHHHHHHHHHHHHHhhCCC
Q 042733 96 GYCEQNDIHSPHDTLYDFTH----CLYMFIEEGMELVELNPF----------------RQALFEQRKRLTVAVEFVANPS 155 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~----~~~~~~~~~l~~l~l~~~----------------~~~~~GerqRv~iA~aL~~~p~ 155 (531)
+|++|++.++ ..|++|+.. .......+.++.+++.+. .+.+.|||||++|||+|+.+|+
T Consensus 69 ~~~~q~~~l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 69 AYVSQEPWIQ-NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEecCchhc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999998876 569988721 011122333333333221 2223399999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 156 IISRDEPISGLDARAATTVIR-MVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
+++|||||+|||+.+++.+.+ +++++.++|+|||++||+++ .+.. +|++++|++ |+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~-G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDN-GR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeC-CC
Confidence 999999999999999999998 56666666899999999986 3445 999999986 64
No 293
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=2.3e-29 Score=260.33 Aligned_cols=189 Identities=19% Similarity=0.263 Sum_probs=161.6
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc----hhhhc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK----QETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~----~~~~~ 92 (531)
..++.+++++.|+ ...++++||+++.+| |||||||+|+|.|...+ .+|+|.++|++.. ....+
T Consensus 3 ~~l~~~~itK~f~--~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P--~~GeI~v~G~~v~~~sP~dA~~ 78 (501)
T COG3845 3 PALEMRGITKRFP--GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP--DSGEIRVDGKEVRIKSPRDAIR 78 (501)
T ss_pred ceEEEeccEEEcC--CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccC--CcceEEECCEEeccCCHHHHHH
Confidence 3467888888885 456788888887777 99999999999997653 5799999998753 23456
Q ss_pred ceEEEEecCCCCCCCCcHHhH--------------HHHHHHHHHHHHHhcCCch-----hhhccHHHHHHHHHHHHHhhC
Q 042733 93 RILGYCEQNDIHSPHDTLYDF--------------THCLYMFIEEGMELVELNP-----FRQALFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~--------------~~~~~~~~~~~l~~l~l~~-----~~~~~~GerqRv~iA~aL~~~ 153 (531)
..||+|.|+..+.+++||.|| ....+++++++.+..|+.- ..+..+||||||.|-++|..+
T Consensus 79 ~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 79 LGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred cCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcC
Confidence 789999999999999999998 2344567888899988853 345556999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
|++|||||||+-|-|....++++.|++++++|+|||++||-.. |+.+.|||+.+|.+ |+++..-+
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~-Gkvvgt~~ 223 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRR-GKVVGTVD 223 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeC-CeEEeeec
Confidence 9999999999999999999999999999999999999999987 79999999999986 99876655
No 294
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.96 E-value=2.4e-29 Score=274.05 Aligned_cols=187 Identities=17% Similarity=0.271 Sum_probs=151.6
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~ 92 (531)
..++++|+++ .+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...+
T Consensus 256 ~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~ 326 (501)
T PRK10762 256 VRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLA 326 (501)
T ss_pred cEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHH
Confidence 3578888763 2577777666555 99999999999998653 46999999976431 2245
Q ss_pred ceEEEEecCC---CCCCCCcHHhHHH-----------------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHH
Q 042733 93 RILGYCEQND---IHSPHDTLYDFTH-----------------CLYMFIEEGMELVELN-PFRQALF-----EQRKRLTV 146 (531)
Q Consensus 93 ~~igyv~Q~~---~~~~~ltv~e~~~-----------------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~i 146 (531)
+.+||++|++ .+++.+|+.|+.. .....+++.++.+++. +..++.+ ||||||+|
T Consensus 327 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~l 406 (501)
T PRK10762 327 NGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAI 406 (501)
T ss_pred CCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHH
Confidence 6799999995 4778899988621 1123467788999994 5555554 99999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
|++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |+++..|++++
T Consensus 407 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 481 (501)
T PRK10762 407 ARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQ 481 (501)
T ss_pred HHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecccc
Confidence 99999999999999999999999999999999999888999999999987 57789999999986 99999988754
No 295
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=7.3e-30 Score=288.45 Aligned_cols=192 Identities=23% Similarity=0.324 Sum_probs=154.9
Q ss_pred ceEEEEEeEEEEEeCCC-ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhh
Q 042733 25 PHYISLNEIVYSVDMPQ-IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETF 91 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~-~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~ 91 (531)
...++++||+|+|+.+. ..+|+|+|+.+++| ||||||++++|.+..++ .+|+|.++|.+... ..+
T Consensus 348 ~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP--~~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP--TSGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred ccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCceEEEcCccchhcchHHH
Confidence 45799999999998653 47999999999988 99999999999998764 57999999988653 457
Q ss_pred cceEEEEecCCCCCCCCcHHhHH-----HHHHHHHHHHHHhcCCchhh-------hcc---------HHHHHHHHHHHHH
Q 042733 92 ARILGYCEQNDIHSPHDTLYDFT-----HCLYMFIEEGMELVELNPFR-------QAL---------FEQRKRLTVAVEF 150 (531)
Q Consensus 92 ~~~igyv~Q~~~~~~~ltv~e~~-----~~~~~~~~~~l~~l~l~~~~-------~~~---------~GerqRv~iA~aL 150 (531)
|.++|.|.|+|.++ ..|++|+. ...++.+.++.+..+..+.. ++. .|||||++|||||
T Consensus 426 r~~iglV~QePvlF-~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARal 504 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLF-ATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARAL 504 (1228)
T ss_pred HhhcCeeeechhhh-cccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHH
Confidence 88999999999664 68999981 11123333443333322222 222 2899999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
+.+|+||+||||||+||+.+.+.+.+.|++.. .|+|.|+++|+++ .+ +.+|+++++++ |+++..|+.++
T Consensus 505 v~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tI-rnaD~I~v~~~-G~IvE~G~h~E 573 (1228)
T KOG0055|consen 505 VRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-TI-RNADKIAVMEE-GKIVEQGTHDE 573 (1228)
T ss_pred HhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hh-hccCEEEEEEC-CEEEEecCHHH
Confidence 99999999999999999999999999998764 5899999999987 34 45999999996 99999998754
No 296
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.96 E-value=1.3e-29 Score=280.69 Aligned_cols=189 Identities=20% Similarity=0.286 Sum_probs=153.8
Q ss_pred eEEEEEeEEEEEeCCC-ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhc
Q 042733 26 HYISLNEIVYSVDMPQ-IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~-~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~ 92 (531)
..++++|++++|+..+ +.+|+|+|+.++|| |||||||+|+|+|..++ .+|+|.+||.+.+ ...++
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p--~~G~I~i~g~~i~~~~~~~~~ 413 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP--QSGRILLDGVDLRQLDPAELR 413 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEEHHhcCHHHHH
Confidence 3689999999997433 57999999999998 99999999999998653 3689999998754 34567
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFV 151 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~ 151 (531)
+.++|++|++.++ +.|++||-. ...+.+.+.++..++.+..+ .+.|||||++||||++
T Consensus 414 ~~i~~~~Q~~~lf-~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~ 492 (576)
T TIGR02204 414 ARMALVPQDPVLF-AASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAIL 492 (576)
T ss_pred HhceEEccCCccc-cccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence 8899999998765 579998821 12334555666655543222 1238999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ....+|+++.+++ |+++..|+.
T Consensus 493 ~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~-g~~~~~g~~ 558 (576)
T TIGR02204 493 KDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQ-GRIVAQGTH 558 (576)
T ss_pred hCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC-CEEEeeecH
Confidence 9999999999999999999999999999885 4899999999985 4577999999986 999999885
No 297
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.5e-29 Score=273.84 Aligned_cols=188 Identities=16% Similarity=0.250 Sum_probs=153.2
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~ 92 (531)
..++++|+++ +.+++|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...+
T Consensus 256 ~~l~~~~~~~------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~ 327 (501)
T PRK11288 256 VRLRLDGLKG------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR--TAGQVYLDGKPIDIRSPRDAIR 327 (501)
T ss_pred cEEEEecccc------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC--CCceEEECCEECCCCCHHHHHh
Confidence 3578888873 24778888666655 99999999999998653 46899999875421 2235
Q ss_pred ceEEEEecCC---CCCCCCcHHhHHH-----------------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHH
Q 042733 93 RILGYCEQND---IHSPHDTLYDFTH-----------------CLYMFIEEGMELVELN-PFRQALF-----EQRKRLTV 146 (531)
Q Consensus 93 ~~igyv~Q~~---~~~~~ltv~e~~~-----------------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~i 146 (531)
+.++|++|++ .+++.+|+.|+.. ..+..+++.++.+++. +..++.+ ||||||+|
T Consensus 328 ~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~l 407 (501)
T PRK11288 328 AGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAIL 407 (501)
T ss_pred CCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHH
Confidence 6799999985 4788899988721 1123567788999984 5555554 99999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
|++|+.+|++|||||||+|||+.++++++++|++++++|.|||++|||++ ++.+.||++++|++ |++++.|++++
T Consensus 408 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 482 (501)
T PRK11288 408 GRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQ 482 (501)
T ss_pred HHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEcccc
Confidence 99999999999999999999999999999999999888999999999987 57789999999986 99999998764
No 298
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.96 E-value=3.1e-29 Score=238.82 Aligned_cols=160 Identities=20% Similarity=0.262 Sum_probs=129.4
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-----hhhcceEEEEecCCC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-----ETFARILGYCEQNDI 103 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-----~~~~~~igyv~Q~~~ 103 (531)
.++|+++++.. ..+.+.+||||||||||+|+|+|..++ .+|+|.++|.+... ..+++.++|++|++.
T Consensus 7 il~~vsl~i~~------Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 78 (190)
T TIGR01166 7 VLKGLNFAAER------GEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPD 78 (190)
T ss_pred eecceeEEEcC------CCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChh
Confidence 46777777753 246788888899999999999998653 47899999976421 234567999999973
Q ss_pred -CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 042733 104 -HSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGL 166 (531)
Q Consensus 104 -~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgL 166 (531)
.....|++|+.. ...+.+++.++.+++.+..++.+ |||||++|||||+.+|++++|||||+||
T Consensus 79 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 158 (190)
T TIGR01166 79 DQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGL 158 (190)
T ss_pred hccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 333579988721 11235677888999987766655 9999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 167 DARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 167 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
|+.+++.+.+.|++++++|+|||++||+++
T Consensus 159 D~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 159 DPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 999999999999999878999999999975
No 299
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.96 E-value=3.1e-29 Score=277.81 Aligned_cols=188 Identities=20% Similarity=0.231 Sum_probs=149.0
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++|++++|+. ++++|+|+|+.+++| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++
T Consensus 333 ~~i~~~~v~~~y~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~~~~ 409 (585)
T TIGR01192 333 GAVEFRHITFEFAN-SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP--TVGQILIDGIDINTVTRESLRK 409 (585)
T ss_pred CeEEEEEEEEECCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC--CCCEEEECCEEhhhCCHHHHHh
Confidence 36999999999963 346899999999888 99999999999998653 4689999998653 245678
Q ss_pred eEEEEecCCCCCCCCcHHhHHHH-----HHHHHHHHHHhcCCch-----------hh-----hccHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTHC-----LYMFIEEGMELVELNP-----------FR-----QALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~~-----~~~~~~~~l~~l~l~~-----------~~-----~~~~GerqRv~iA~aL~~ 152 (531)
.++|++|++.+++ .|++|+... ..+.+.+.++..++.+ .. +.+.|||||++|||||+.
T Consensus 410 ~i~~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~ 488 (585)
T TIGR01192 410 SIATVFQDAGLFN-RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK 488 (585)
T ss_pred heEEEccCCccCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 8999999988765 699987210 1122223333332221 11 123399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++++|||||+|||+.+++.+.+.|+++. +++|+|++||+++. ...||++++|++ |+++..|+.
T Consensus 489 ~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~--~~~~d~i~~l~~-G~i~~~g~~ 553 (585)
T TIGR01192 489 NAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST--VRNADLVLFLDQ-GRLIEKGSF 553 (585)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH--HHcCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999874 58999999999863 467999999986 999998875
No 300
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.96 E-value=6e-29 Score=250.17 Aligned_cols=194 Identities=22% Similarity=0.314 Sum_probs=166.8
Q ss_pred cceEEEEEeEEEEEeCCCc---------cccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 042733 24 EPHYISLNEIVYSVDMPQI---------GDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYP 85 (531)
Q Consensus 24 ~~~~l~~~~ls~~~~~~~~---------~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~ 85 (531)
.++.++.+|+...|+.++. .+++++|+.+.+| |||||||-.+|.++.++ +|+|.+.|.+
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~ 349 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQD 349 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCcc
Confidence 5678999999999875432 6889999999888 99999999999998764 4899999987
Q ss_pred cch------hhhcceEEEEecCCC--CCCCCcHHhH-------------HHHHHHHHHHHHHhcCCchh-hhccH-----
Q 042733 86 EKQ------ETFARILGYCEQNDI--HSPHDTLYDF-------------THCLYMFIEEGMELVELNPF-RQALF----- 138 (531)
Q Consensus 86 ~~~------~~~~~~igyv~Q~~~--~~~~ltv~e~-------------~~~~~~~~~~~l~~l~l~~~-~~~~~----- 138 (531)
... ...|+.+-.|+||+. +.|.+||.+. ..++.+++.++++.+||++- +++..
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG 429 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG 429 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc
Confidence 642 246788999999974 7899999876 45667889999999999864 44443
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeee
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS 217 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~ 217 (531)
|||||++||||++.+|++++||||||.||-.-+.+++++|+++.++ |.+-++++||+. -+..+||+|++|.+ |+++.
T Consensus 430 GQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~-GkiVE 507 (534)
T COG4172 430 GQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRD-GKIVE 507 (534)
T ss_pred chhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeC-CEEee
Confidence 9999999999999999999999999999999999999999999864 999999999986 36678999999996 99999
Q ss_pred cCCCC
Q 042733 218 VGPLG 222 (531)
Q Consensus 218 ~G~~~ 222 (531)
.|+.+
T Consensus 508 ~G~~~ 512 (534)
T COG4172 508 QGPTE 512 (534)
T ss_pred eCCHH
Confidence 99863
No 301
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.96 E-value=2e-29 Score=276.58 Aligned_cols=177 Identities=24% Similarity=0.349 Sum_probs=146.2
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~ 94 (531)
.++++|++|+|+..++++|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++.
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP--TEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEehhhCCHHHHHhh
Confidence 69999999999754457999999999998 99999999999998664 4699999998754 3457888
Q ss_pred EEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhh-------cc---------HHHHHHHHHHHHHhhC
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQ-------AL---------FEQRKRLTVAVEFVAN 153 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~-------~~---------~GerqRv~iA~aL~~~ 153 (531)
++||+|++.+++ .|++|+-. ..++.+.++++..++.+..+ +. .|||||++|||||+++
T Consensus 398 i~~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 398 IAWVPQHPFLFA-GTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred eEEEcCCCcccC-cCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 999999998775 69999821 12344566666666654322 22 2899999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL 209 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL 209 (531)
|++++||||||+||+.+++++.+.++++. +++|+|+++|+++ ....||++++|
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 99999999999999999999999999875 5899999999985 35679999875
No 302
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.96 E-value=1.1e-28 Score=275.93 Aligned_cols=192 Identities=21% Similarity=0.279 Sum_probs=161.2
Q ss_pred EEEEEeEEEEEeCC--CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh--
Q 042733 27 YISLNEIVYSVDMP--QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-- 90 (531)
Q Consensus 27 ~l~~~~ls~~~~~~--~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-- 90 (531)
.++++|++++|+.. .+.+|+|+|+.+.|| |||||||+|+|+|..++ .+|++.++|.+... ..
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~i~~~~~~~~~ 81 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP--TSGTYRVAGQDVATLDADALA 81 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEcCcCCHHHHH
Confidence 57899999998532 246899999888887 99999999999998653 46999999986532 11
Q ss_pred --hcceEEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhh
Q 042733 91 --FARILGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVA 152 (531)
Q Consensus 91 --~~~~igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~ 152 (531)
.++.++|++|+..+++.+|+.|+. .+..+.+.+.++.+++.+..++.. |||||++|||+|+.
T Consensus 82 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~ 161 (648)
T PRK10535 82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN 161 (648)
T ss_pred HHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 246799999999999999988862 122345677889999988766665 99999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
+|++|+|||||+|||+.+++.+.+.+++++++|+|+|++||+++ ..+.||++++|++ |+++..|+.++
T Consensus 162 ~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~-G~i~~~g~~~~ 229 (648)
T PRK10535 162 GGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRD-GEIVRNPPAQE 229 (648)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEEC-CEEEeecCccc
Confidence 99999999999999999999999999999877999999999986 3457999999996 99999998763
No 303
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.96 E-value=7.6e-29 Score=231.18 Aligned_cols=156 Identities=24% Similarity=0.264 Sum_probs=126.8
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
++++|++++|+. .+.+|+++|+.+.+| |||||||+++|+|..++ .+|++.++|. +.++|+
T Consensus 1 i~~~~~~~~~~~-~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~--------~~i~~~ 69 (166)
T cd03223 1 IELENLSLATPD-GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW--GSGRIGMPEG--------EDLLFL 69 (166)
T ss_pred CEEEEEEEEcCC-CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCC--------ceEEEE
Confidence 367888888852 246888888888877 99999999999998653 4688888763 568999
Q ss_pred ecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 042733 99 EQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMV 178 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L 178 (531)
+|++.++ ..|+.|+.... .....+.|||||++|||+|+.+|++++|||||+|||+.+++.+.+.+
T Consensus 70 ~q~~~~~-~~tv~~nl~~~--------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l 134 (166)
T cd03223 70 PQRPYLP-LGTLREQLIYP--------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL 134 (166)
T ss_pred CCCCccc-cccHHHHhhcc--------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHH
Confidence 9997654 57888753210 12344559999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 179 RNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 179 ~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
+++ +.|+|++||+++ ....||++++|+++|.
T Consensus 135 ~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~~ 165 (166)
T cd03223 135 KEL---GITVISVGHRPS--LWKFHDRVLDLDGEGG 165 (166)
T ss_pred HHh---CCEEEEEeCChh--HHhhCCEEEEEcCCCC
Confidence 876 689999999975 3468999999987663
No 304
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=9.1e-29 Score=236.61 Aligned_cols=171 Identities=18% Similarity=0.195 Sum_probs=135.4
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
++++|++++|+ ++.+++ +|+.+.+| |||||||+|+|+|..++ .+|++.++|.+..... ++.++|+
T Consensus 2 l~~~~l~~~~~--~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~-~~~~~~~ 75 (195)
T PRK13541 2 LSLHQLQFNIE--QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP--SSGNIYYKNCNINNIA-KPYCTYI 75 (195)
T ss_pred eEEEEeeEEEC--CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCcccChhh-hhhEEec
Confidence 56778888874 233444 77777666 99999999999998653 4799999998754322 3458999
Q ss_pred ecCCCCCCCCcHHhHHHH------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 042733 99 EQNDIHSPHDTLYDFTHC------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLD 167 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~~------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD 167 (531)
+|+..+++..|+.|+... ....+++.++.+++.+..++.+ |||||++||++++.+|++++|||||+|||
T Consensus 76 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD 155 (195)
T PRK13541 76 GHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155 (195)
T ss_pred cCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 999888888999987321 1235677788888876666554 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeE
Q 042733 168 ARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDEL 206 (531)
Q Consensus 168 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v 206 (531)
+.+++.+.+.|++..++|+|+|+++|+++. ...+|.+
T Consensus 156 ~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--i~~~~~~ 192 (195)
T PRK13541 156 KENRDLLNNLIVMKANSGGIVLLSSHLESS--IKSAQIL 192 (195)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCccc--cchhhee
Confidence 999999999998776779999999999863 3345544
No 305
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=5.9e-29 Score=271.34 Aligned_cols=186 Identities=18% Similarity=0.249 Sum_probs=149.5
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~ 93 (531)
.++++|+++ .+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++
T Consensus 268 ~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~ 338 (510)
T PRK15439 268 VLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLAR 338 (510)
T ss_pred eEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhC
Confidence 577787762 1466666666555 99999999999997653 36899999875432 12345
Q ss_pred eEEEEecCC---CCCCCCcHHhHHH--------------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHHHH
Q 042733 94 ILGYCEQND---IHSPHDTLYDFTH--------------CLYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAVEF 150 (531)
Q Consensus 94 ~igyv~Q~~---~~~~~ltv~e~~~--------------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~aL 150 (531)
.++|++|++ .+++.+|+.++.. ..+..+++.++.+++. +..++.+ ||||||+||++|
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al 418 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL 418 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH
Confidence 799999984 4777888876521 1123467788999996 5566654 999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++ ++.+.||++++|++ |+++..|.+++
T Consensus 419 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~~ 489 (510)
T PRK15439 419 EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGAA 489 (510)
T ss_pred hhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcccc
Confidence 9999999999999999999999999999999888999999999987 57789999999986 99999887754
No 306
>PLN03232 ABC transporter C family member; Provisional
Probab=99.96 E-value=2.3e-29 Score=302.93 Aligned_cols=189 Identities=18% Similarity=0.202 Sum_probs=156.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~ 94 (531)
.|+++||+++|+.+.+++|+|+|+.++|| |||||||+++|.|..++ .+|+|.++|.+.. ...+|+.
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEEECCEEhhhCCHHHHHhh
Confidence 69999999999644457999999999999 99999999999998653 4699999998764 3567889
Q ss_pred EEEEecCCCCCCCCcHHhHH----HHHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhhCC
Q 042733 95 LGYCEQNDIHSPHDTLYDFT----HCLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVANP 154 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~----~~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~~p 154 (531)
++||||++.+++ -|++||- ....+.+.++++..++.+..+ -+.|||||++|||||+++|
T Consensus 1312 i~iVpQdp~LF~-gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~ 1390 (1495)
T PLN03232 1312 LSIIPQSPVLFS-GTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS 1390 (1495)
T ss_pred cEEECCCCeeeC-ccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 999999998886 5999982 112234556666666544322 2238999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+||+||||||+||+.+.+.+.+.|++.. +++|+|+++|+++ ....||+|++|++ |+++..|+++
T Consensus 1391 ~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~-G~ivE~Gt~~ 1454 (1495)
T PLN03232 1391 KILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS-GQVLEYDSPQ 1454 (1495)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999864 4899999999986 3456999999996 9999999874
No 307
>PLN03130 ABC transporter C family member; Provisional
Probab=99.96 E-value=3.2e-29 Score=302.25 Aligned_cols=190 Identities=18% Similarity=0.226 Sum_probs=157.6
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..|+++||+++|+.+.+++|+|+|++++|| |||||||+++|.|..++ .+|+|.++|.+... ..+|+
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred CcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCEecccCCHHHHHh
Confidence 369999999999744457999999999999 99999999999998663 46999999987643 56788
Q ss_pred eEEEEecCCCCCCCCcHHhHHH----HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhhC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH----CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~----~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~~ 153 (531)
.+++|||++.++. -|++||.. ...+.+.++++..++.+..+ -+.|||||++|||||+++
T Consensus 1314 ~IsiVpQdp~LF~-GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~ 1392 (1622)
T PLN03130 1314 VLGIIPQAPVLFS-GTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392 (1622)
T ss_pred ccEEECCCCcccc-ccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 9999999998886 49999821 12234556666665543322 223899999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+||+||||||+||+.+.+.+.+.|++.. +++|+|+++|+++. ...||+|++|++ |+++..|+++
T Consensus 1393 p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t--I~~~DrIlVLd~-G~IvE~Gt~~ 1457 (1622)
T PLN03130 1393 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRILVLDA-GRVVEFDTPE 1457 (1622)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH--HHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999875 48999999999873 456899999996 9999999975
No 308
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.96 E-value=1e-28 Score=240.33 Aligned_cols=178 Identities=20% Similarity=0.241 Sum_probs=134.5
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hhhc
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ETFA 92 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~~~ 92 (531)
.+.++.++|+. .+.+++++|+.+.+| |||||||+++|+|..++ .+|+|.++|.+... ...+
T Consensus 2 ~~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (218)
T cd03290 2 QVTNGYFSWGS-GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEPSFEATRSRNR 78 (218)
T ss_pred eeeeeEEecCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCcccccccccccchhhc
Confidence 45677777753 245778887777766 99999999999998653 46899999875421 1234
Q ss_pred ceEEEEecCCCCCCCCcHHhHHHH----HHHHHHHHHHhcCCchhh----------------hccHHHHHHHHHHHHHhh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTHC----LYMFIEEGMELVELNPFR----------------QALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~~----~~~~~~~~l~~l~l~~~~----------------~~~~GerqRv~iA~aL~~ 152 (531)
+.++|++|++.++ ..|++|+... ......+.++.+++.+.. +.+.|||||++||++|+.
T Consensus 79 ~~i~~~~q~~~~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 79 YSVAYAAQKPWLL-NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred ceEEEEcCCCccc-cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 6799999998776 5799887321 112234455555554321 223399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHH--HHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCc
Q 042733 153 NPSIISRDEPISGLDARAATTVIR--MVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVG 213 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~--~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G 213 (531)
+|++++|||||+|||+.++..+++ +++.++++|.|+|++||+++. + ..||++++|++ |
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~-G 217 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMKD-G 217 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEecC-C
Confidence 999999999999999999999998 666666668999999999873 4 56999999985 6
No 309
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.96 E-value=1.1e-28 Score=268.31 Aligned_cols=190 Identities=22% Similarity=0.301 Sum_probs=150.3
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhh
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETF 91 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~ 91 (531)
...++++|+++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+. ..+|+|.++|.+... ...
T Consensus 258 ~~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~ 334 (490)
T PRK10938 258 EPRIVLNNGVVSYN--DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDI 334 (490)
T ss_pred CceEEEeceEEEEC--CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHH
Confidence 34699999999995 356999999887766 99999999999997542 136899999875321 124
Q ss_pred cceEEEEecCCCCCC--CCcHHhHHH---------------HHHHHHHHHHHhcCCch-hhhccH-----HHHHHHHHHH
Q 042733 92 ARILGYCEQNDIHSP--HDTLYDFTH---------------CLYMFIEEGMELVELNP-FRQALF-----EQRKRLTVAV 148 (531)
Q Consensus 92 ~~~igyv~Q~~~~~~--~ltv~e~~~---------------~~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~iA~ 148 (531)
++.+||++|++.+.+ ..++++... .....+++.++.+++.+ ..++.+ ||||||+||+
T Consensus 335 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~ 414 (490)
T PRK10938 335 KKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVR 414 (490)
T ss_pred HhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHH
Confidence 567999999865433 245655411 11345778899999986 666654 9999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CeEEEEecCCchHHHh-ccCeEEEEccCceeeecC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMG-RTVVCTIHQPSIDIFY-SFDELFLLKQVGQEISVG 219 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~-~~d~v~lL~~~G~~v~~G 219 (531)
+|+.+|++|+|||||+|||+.+++.+.+.|++++++| .|||++||+++ ++.+ .+|++++|++ |+++..-
T Consensus 415 al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~-G~i~~~~ 485 (490)
T PRK10938 415 ALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD-GDIYRYV 485 (490)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC-CceEEee
Confidence 9999999999999999999999999999999998775 46999999987 4555 5899999986 8887653
No 310
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.96 E-value=1.2e-28 Score=271.19 Aligned_cols=187 Identities=18% Similarity=0.232 Sum_probs=152.2
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..++++|++|+|+. ++++|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+..+ ..+++
T Consensus 321 ~~i~~~~v~f~y~~-~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~~~~ 397 (547)
T PRK10522 321 QTLELRNVTFAYQD-NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP--QSGEILLDGKPVTAEQPEDYRK 397 (547)
T ss_pred ceEEEEEEEEEeCC-CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEECCCCCHHHHhh
Confidence 36999999999973 346999999999998 99999999999998653 47999999987542 45778
Q ss_pred eEEEEecCCCCCCCCcHHhHH-HHHHHHHHHHHHhcCCchhh----------hccHHHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFT-HCLYMFIEEGMELVELNPFR----------QALFEQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~-~~~~~~~~~~l~~l~l~~~~----------~~~~GerqRv~iA~aL~~~p~lllLDEP 162 (531)
.++|++|++.+++ .|++++. ....+.+++.++.+++.... +.+.|||||++||||++++|++|+||||
T Consensus 398 ~i~~v~q~~~lf~-~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ 476 (547)
T PRK10522 398 LFSAVFTDFHLFD-QLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEW 476 (547)
T ss_pred heEEEecChhHHH-HhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 8999999987654 5666651 22234566777777776432 2344999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 163 ISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
|++||+.+++.+.+.+.+..+ +|+|+|+++|+++ ....||++++|++ |+++...
T Consensus 477 ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~-G~i~e~~ 531 (547)
T PRK10522 477 AADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRN-GQLSELT 531 (547)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEEC-CEEEEec
Confidence 999999999999999886654 5899999999975 4678999999986 8888664
No 311
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=2.1e-28 Score=242.35 Aligned_cols=154 Identities=21% Similarity=0.243 Sum_probs=130.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHH-------HH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHC-------LY 118 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~-------~~ 118 (531)
.++.+.+||||||||||+|+|+|..++ .+|++.++|. .++|++|+....+..||.|+... ..
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p--~~G~i~~~g~---------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 93 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKP--DEGDIEIELD---------TVSYKPQYIKADYEGTVRDLLSSITKDFYTHP 93 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCc---------eEEEecccccCCCCCCHHHHHHHHhhhccccH
Confidence 367899999999999999999997653 4688888773 58999999877778999987321 11
Q ss_pred HHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEe
Q 042733 119 MFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTI 192 (531)
Q Consensus 119 ~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~ 192 (531)
...+++++.+++.+..++.+ ||||||+||++|+.+|++++|||||++||+.++..+.+.|++++++ |+|||++|
T Consensus 94 ~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivs 173 (246)
T cd03237 94 YFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVE 173 (246)
T ss_pred HHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 23567888999987666654 9999999999999999999999999999999999999999999864 89999999
Q ss_pred cCCchHHHhccCeEEEEcc
Q 042733 193 HQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 193 H~~~~~i~~~~d~v~lL~~ 211 (531)
|++. .+...||++++|+.
T Consensus 174 Hd~~-~~~~~~d~i~~l~~ 191 (246)
T cd03237 174 HDII-MIDYLADRLIVFEG 191 (246)
T ss_pred CCHH-HHHHhCCEEEEEcC
Confidence 9986 46678999999963
No 312
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.6e-29 Score=268.33 Aligned_cols=187 Identities=21% Similarity=0.343 Sum_probs=152.6
Q ss_pred eEEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 26 HYISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
-.|+|+||+|.|+.+ +.++|+|+|++++|| |+||||+.++|-...++ .+|+|.++|.|+.+ ..+|
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P--tsG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP--TSGRILLDGVPISDINHKYLR 541 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCCeEEECCeehhhcCHHHHH
Confidence 478999999999865 347999999999999 99999999999997653 47999999998754 4578
Q ss_pred ceEEEEecCCCCCCCCcHHhHH---------HHH-----HHHHHHHHHhcCCchhhhccH---------HHHHHHHHHHH
Q 042733 93 RILGYCEQNDIHSPHDTLYDFT---------HCL-----YMFIEEGMELVELNPFRQALF---------EQRKRLTVAVE 149 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~---------~~~-----~~~~~~~l~~l~l~~~~~~~~---------GerqRv~iA~a 149 (531)
++||+|.|+|.+|. -|++||. ++. ...+++-+.. +.+-.|+.+ |||||++||||
T Consensus 542 ~~Ig~V~QEPvLFs-~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~--~p~gY~T~VGEkG~qLSGGQKQRIAIARA 618 (716)
T KOG0058|consen 542 RKIGLVGQEPVLFS-GSIRENIAYGLDNATDEEIEAAAKMANAHEFITN--FPDGYNTVVGEKGSQLSGGQKQRIAIARA 618 (716)
T ss_pred HHeeeeeccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHh--CccccccccCCccccccchHHHHHHHHHH
Confidence 99999999999874 6888881 111 1112222222 223334444 89999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|++||+||||||.||.||.++...+.+.|.++.+ ++|||++.|.++ ..+.+|+|+++++ |+++..|+-
T Consensus 619 Llr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~-G~V~E~G~h 686 (716)
T KOG0058|consen 619 LLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDK-GRVVEMGTH 686 (716)
T ss_pred HhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcC-CeEEecccH
Confidence 9999999999999999999999999999988865 599999999986 4678899999996 999999964
No 313
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.4e-28 Score=267.97 Aligned_cols=178 Identities=20% Similarity=0.208 Sum_probs=145.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
|+++|++++|+ ++++|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|. +.+||+
T Consensus 2 l~i~~ls~~~~--~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~~--------~~i~~~ 69 (530)
T PRK15064 2 LSTANITMQFG--AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP--SAGNVSLDPN--------ERLGKL 69 (530)
T ss_pred EEEEEEEEEeC--CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC--------CEEEEE
Confidence 67889998885 356888888887776 99999999999997653 4688888762 358999
Q ss_pred ecCCCCCCCCcHHhHHHH-------------------------------------------HHHHHHHHHHhcCCchhh-
Q 042733 99 EQNDIHSPHDTLYDFTHC-------------------------------------------LYMFIEEGMELVELNPFR- 134 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~~-------------------------------------------~~~~~~~~l~~l~l~~~~- 134 (531)
+|++.+++.+||.|+... ...+++++++.+|+.+..
T Consensus 70 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 149 (530)
T PRK15064 70 RQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQH 149 (530)
T ss_pred eccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHh
Confidence 999888888898876210 123466788889986532
Q ss_pred hcc-----HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE
Q 042733 135 QAL-----FEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL 209 (531)
Q Consensus 135 ~~~-----~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL 209 (531)
+.. .||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++ .|.|||++||+++ .+.+.||++++|
T Consensus 150 ~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~~~~d~i~~l 225 (530)
T PRK15064 150 YGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FLNSVCTHMADL 225 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HHHhhcceEEEE
Confidence 222 3999999999999999999999999999999999999999863 5899999999987 477889999999
Q ss_pred ccCcee-eecCCCC
Q 042733 210 KQVGQE-ISVGPLG 222 (531)
Q Consensus 210 ~~~G~~-v~~G~~~ 222 (531)
++ |++ ++.|+++
T Consensus 226 ~~-g~i~~~~g~~~ 238 (530)
T PRK15064 226 DY-GELRVYPGNYD 238 (530)
T ss_pred eC-CEEEEecCCHH
Confidence 96 898 4788753
No 314
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.96 E-value=1.4e-28 Score=271.09 Aligned_cols=187 Identities=17% Similarity=0.174 Sum_probs=150.9
Q ss_pred eEEEEEeEEEEEeCC---CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh
Q 042733 26 HYISLNEIVYSVDMP---QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET 90 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~---~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~ 90 (531)
..++++|++|+|+.+ ++++|+|+|+.+++| |||||||+|+|+|..++ .+|+|.++|.+..+ ..
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p--~~G~i~~~g~~i~~~~~~~ 413 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP--QEGEILLDGAAVSADSRDD 413 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHH
Confidence 469999999999743 235999999999988 99999999999997653 46999999987643 45
Q ss_pred hcceEEEEecCCCCCCCCcHHhHH--HHHHHHHHHHHHhcCCchhhh-----------ccHHHHHHHHHHHHHhhCCCeE
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFT--HCLYMFIEEGMELVELNPFRQ-----------ALFEQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~--~~~~~~~~~~l~~l~l~~~~~-----------~~~GerqRv~iA~aL~~~p~ll 157 (531)
+++.++|++|++.++. .|++++. ....+.+++.++.+++.+..+ .+.|||||++||||++.+|+++
T Consensus 414 ~~~~i~~v~q~~~lf~-~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~il 492 (555)
T TIGR01194 414 YRDLFSAIFADFHLFD-DLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPIL 492 (555)
T ss_pred HHhhCcEEccChhhhh-hhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 6788999999987664 4666552 223345677788888765432 3349999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH-HHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeec
Q 042733 158 SRDEPISGLDARAATTVIRMVR-NTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISV 218 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~-~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~ 218 (531)
+|||||++||+.+++.+.+.+. .++.+|+|+|+++|+++ ..+.+|++++|++ |+++..
T Consensus 493 ilDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~-G~i~~~ 551 (555)
T TIGR01194 493 LFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAA-GCIVKD 551 (555)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999998664 45557899999999985 4678999999986 888743
No 315
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.96 E-value=6.2e-29 Score=256.73 Aligned_cols=207 Identities=24% Similarity=0.292 Sum_probs=168.8
Q ss_pred hhhhhcccCCCccccccceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEE
Q 042733 8 AIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRN 78 (531)
Q Consensus 8 ~i~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~ 78 (531)
.++....+...|.+|...-.+.++++++.-+..++++|+++||.+.+| |||||||.|+|.|..++ .+|.
T Consensus 315 lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p--~~G~ 392 (580)
T COG4618 315 LLAELPAAAERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP--TSGS 392 (580)
T ss_pred HHHhCccccCCCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc--CCCc
Confidence 455666666788888777889999999977766779999999988877 99999999999997663 4789
Q ss_pred EEEcCcccch---hhhcceEEEEecCCCCCCCCcHHhHHHH-----HH---------HHHHHHHHhcCCchhhhccH---
Q 042733 79 ITVSGYPEKQ---ETFARILGYCEQNDIHSPHDTLYDFTHC-----LY---------MFIEEGMELVELNPFRQALF--- 138 (531)
Q Consensus 79 i~~~g~~~~~---~~~~~~igyv~Q~~~~~~~ltv~e~~~~-----~~---------~~~~~~l~~l~l~~~~~~~~--- 138 (531)
|.++|.+.++ +.+-+.+||+||+-.+|+ -|+.||... .. ..+.+.+-. +.+=.|+.+
T Consensus 393 VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~--lP~GYdT~iG~~ 469 (580)
T COG4618 393 VRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIARFGEEADPEKVIEAARLAGVHELILR--LPQGYDTRIGEG 469 (580)
T ss_pred EEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHHhccccCCHHHHHHHHHHcChHHHHHh--CcCCccCccCCC
Confidence 9999987643 457789999999988775 689888211 11 112222222 222234443
Q ss_pred ------HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccC
Q 042733 139 ------EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQV 212 (531)
Q Consensus 139 ------GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~ 212 (531)
|||||+++||||..+|.+++||||-|+||......+.+.|.+++++|.|+|+++|.|+ +...+|+|++|++
T Consensus 470 G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~- 546 (580)
T COG4618 470 GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQD- 546 (580)
T ss_pred CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecC-
Confidence 8999999999999999999999999999999999999999999999999999999986 5788999999996
Q ss_pred ceeeecCCCC
Q 042733 213 GQEISVGPLG 222 (531)
Q Consensus 213 G~~v~~G~~~ 222 (531)
|++-.+|+.+
T Consensus 547 G~~~~FG~r~ 556 (580)
T COG4618 547 GRIAAFGPRE 556 (580)
T ss_pred ChHHhcCCHH
Confidence 9999999963
No 316
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.96 E-value=7.1e-29 Score=272.18 Aligned_cols=165 Identities=24% Similarity=0.326 Sum_probs=136.7
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc--hhhhcce
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK--QETFARI 94 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~--~~~~~~~ 94 (531)
..++++||+|+|+. ++++|+|+|++++|| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++.
T Consensus 333 ~~I~~~~vsf~Y~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~i~g~~i~~~~~~lr~~ 409 (529)
T TIGR02868 333 PTLELRDLSFGYPG-SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP--LQGEVTLDGVSVSSLQDELRRR 409 (529)
T ss_pred ceEEEEEEEEecCC-CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhhhHHHHHHhh
Confidence 46999999999974 346999999999998 99999999999998664 4799999997654 3557789
Q ss_pred EEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhh-------cc---------HHHHHHHHHHHHHhhC
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQ-------AL---------FEQRKRLTVAVEFVAN 153 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~-------~~---------~GerqRv~iA~aL~~~ 153 (531)
++||+|++.+++ .|++||-. ...+.+.++++..++.+..+ +. .|||||++|||||+++
T Consensus 410 i~~V~Q~~~lF~-~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~ 488 (529)
T TIGR02868 410 ISVFAQDAHLFD-TTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLAD 488 (529)
T ss_pred eEEEccCccccc-ccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcC
Confidence 999999988764 69999821 23345667777777655332 22 2899999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
|++++||||||+||+.+++.+.+.|+++. +++|+|+++|++
T Consensus 489 ~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 489 APILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 99999999999999999999999998763 579999999974
No 317
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2e-28 Score=266.15 Aligned_cols=190 Identities=12% Similarity=0.174 Sum_probs=151.8
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhh
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETF 91 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~ 91 (531)
+..|+++|+++.+ +.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...
T Consensus 248 ~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~ 321 (491)
T PRK10982 248 EVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK--SAGTITLHGKKINNHNANEAI 321 (491)
T ss_pred CcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC--CccEEEECCEECCCCCHHHHH
Confidence 3468999999863 35889888777766 99999999999998653 46899999976432 123
Q ss_pred cceEEEEecCC---CCCCCCcHHhH-----H------------HHHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHH
Q 042733 92 ARILGYCEQND---IHSPHDTLYDF-----T------------HCLYMFIEEGMELVELN-PFRQALF-----EQRKRLT 145 (531)
Q Consensus 92 ~~~igyv~Q~~---~~~~~ltv~e~-----~------------~~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~ 145 (531)
++.++|++|+. .+++.+|+.++ . ......+++.++.+++. +..++.+ ||||||+
T Consensus 322 ~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~ 401 (491)
T PRK10982 322 NHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVI 401 (491)
T ss_pred HCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHH
Confidence 55689999985 35677776543 0 11123456778888884 3445544 9999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||++++.+|++|+|||||+|||+.++..+++.+++++++|.|||++|||++ ++.++||++++|.+ |+++..++.+
T Consensus 402 la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 476 (491)
T PRK10982 402 IGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDTK 476 (491)
T ss_pred HHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEccc
Confidence 999999999999999999999999999999999999888999999999987 57789999999986 9999877654
No 318
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.96 E-value=8.6e-29 Score=295.94 Aligned_cols=192 Identities=15% Similarity=0.241 Sum_probs=155.3
Q ss_pred EEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc-----------------------
Q 042733 27 YISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG----------------------- 73 (531)
Q Consensus 27 ~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g----------------------- 73 (531)
.|+++||+|+|+.. +.++|+|+|+.++|| |||||||+++|.|..++.
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 58999999999743 357999999999999 999999999999965430
Q ss_pred -----------------------------eEEEEEEEcCcccch---hhhcceEEEEecCCCCCCCCcHHhHHH-----H
Q 042733 74 -----------------------------YITRNITVSGYPEKQ---ETFARILGYCEQNDIHSPHDTLYDFTH-----C 116 (531)
Q Consensus 74 -----------------------------~~~G~i~~~g~~~~~---~~~~~~igyv~Q~~~~~~~ltv~e~~~-----~ 116 (531)
..+|+|.++|.+..+ ..+|+.+|||+|++.+| ..|++||.. .
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~~~a 1323 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKEDA 1323 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCCCCC
Confidence 137999999988643 56788999999998876 689999821 1
Q ss_pred HHHHHHHHHHhcCCchhh-------hccH---------HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 042733 117 LYMFIEEGMELVELNPFR-------QALF---------EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRN 180 (531)
Q Consensus 117 ~~~~~~~~l~~l~l~~~~-------~~~~---------GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~ 180 (531)
..+.++++++..++.+.. |+.+ |||||++|||||+++|+||+||||||+||+.+.+.+.+.|++
T Consensus 1324 t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~ 1403 (1466)
T PTZ00265 1324 TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVD 1403 (1466)
T ss_pred CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 223456666666554432 2222 899999999999999999999999999999999999999999
Q ss_pred HH-HcCCeEEEEecCCchHHHhccCeEEEEccC---ceee-ecCCC
Q 042733 181 TV-DMGRTVVCTIHQPSIDIFYSFDELFLLKQV---GQEI-SVGPL 221 (531)
Q Consensus 181 l~-~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~---G~~v-~~G~~ 221 (531)
+. .+++|+|+++|+++ ....||+|++|+++ |+++ ..|+.
T Consensus 1404 ~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1404 IKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred HhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 86 36899999999985 45679999999852 7754 78875
No 319
>PTZ00243 ABC transporter; Provisional
Probab=99.96 E-value=1e-28 Score=297.31 Aligned_cols=190 Identities=17% Similarity=0.171 Sum_probs=158.6
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
-.|+++||+++|+.+...+|+|+|+.++|| |||||||+++|.|..++ .+|+|.++|.++. ...+|+
T Consensus 1307 G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p--~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV--CGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred CeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcccCCHHHHHh
Confidence 369999999999754456999999999999 99999999999998663 4699999998864 356789
Q ss_pred eEEEEecCCCCCCCCcHHhHHH----HHHHHHHHHHHhcCCchhh-------h---------ccHHHHHHHHHHHHHhhC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH----CLYMFIEEGMELVELNPFR-------Q---------ALFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~----~~~~~~~~~l~~l~l~~~~-------~---------~~~GerqRv~iA~aL~~~ 153 (531)
.+|||||++.++. -|+++|.. ...+.+.++++..++.+.. | .+.|||||++|||||+++
T Consensus 1385 ~I~iVpQdp~LF~-gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1385 QFSMIPQDPVLFD-GTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred cceEECCCCcccc-ccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 9999999998876 59999832 1234566777777765432 2 223999999999999996
Q ss_pred -CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 -PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 -p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+||+||||||+||+.+.+.+.+.|++.. +++|||+++|+++ ....||+|++|++ |+++..|+++
T Consensus 1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~-G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDH-GAVAEMGSPR 1529 (1560)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence 89999999999999999999999998864 4799999999985 4567999999986 9999999864
No 320
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.96 E-value=1.4e-28 Score=296.54 Aligned_cols=190 Identities=16% Similarity=0.171 Sum_probs=157.7
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..|+++||+++|+.+...+|+|+|+.++|| |||||||+++|.|..++ .+|+|.++|.++.. ..+|+
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~--~~G~I~IdG~dI~~i~~~~LR~ 1360 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES--AEGEIIIDGLNIAKIGLHDLRF 1360 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC--CCCeEEECCEEccccCHHHHHh
Confidence 469999999999754457999999999998 99999999999998653 46999999988643 56788
Q ss_pred eEEEEecCCCCCCCCcHHhHHH----HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhhC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH----CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~----~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~~ 153 (531)
.+++|||++.++.. |+++|.. ...+.+.++++..++.+..+ -+.|||||++|||||+++
T Consensus 1361 ~i~iVpQdp~LF~g-TIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957 1361 KITIIPQDPVLFSG-SLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred cCeEECCCCcccCc-cHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence 99999999998864 9999832 12334566666666544322 122899999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+||+||||||+||+.+...+.+.|++.. +++|||+++|+++ ....+|+|++|++ |+++..|+++
T Consensus 1440 ~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~-G~IvE~G~~~ 1504 (1522)
T TIGR00957 1440 TKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK-GEVAEFGAPS 1504 (1522)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999999999998864 4899999999986 3556899999996 9999999874
No 321
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.96 E-value=9.1e-28 Score=242.09 Aligned_cols=181 Identities=15% Similarity=0.181 Sum_probs=140.3
Q ss_pred cccccceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhh
Q 042733 20 VLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQET 90 (531)
Q Consensus 20 ~~~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~ 90 (531)
..+..+..|+++|+++. .+.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|
T Consensus 32 ~~~~~~~~l~i~nls~~----~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p--~~G~I~i~g------- 98 (282)
T cd03291 32 KHSSDDNNLFFSNLCLV----GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP--SEGKIKHSG------- 98 (282)
T ss_pred ccCCCCCeEEEEEEEEe----cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECC-------
Confidence 34445667999999985 246999999888887 99999999999998653 368888877
Q ss_pred hcceEEEEecCCCCCCCCcHHhHHHH----HHHHHHHHHHhcCCchh----------------hhccHHHHHHHHHHHHH
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFTHC----LYMFIEEGMELVELNPF----------------RQALFEQRKRLTVAVEF 150 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~~~----~~~~~~~~l~~l~l~~~----------------~~~~~GerqRv~iA~aL 150 (531)
.++|++|++.+++ .|++|+... ......+.++.+++.+. ...+.|||||++||++|
T Consensus 99 ---~i~yv~q~~~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL 174 (282)
T cd03291 99 ---RISFSSQFSWIMP-GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAV 174 (282)
T ss_pred ---EEEEEeCcccccc-cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHH
Confidence 3899999987776 499887221 01122333444444321 12334999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMV-RNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L-~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+.+|++++|||||+|||+.++..+.+.+ +.++ ++.|||++||++.. + ..||++++|++ |+++..|++
T Consensus 175 ~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~-G~i~~~g~~ 242 (282)
T cd03291 175 YKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHE-GSSYFYGTF 242 (282)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999999865 5554 57999999999873 4 57999999986 999999875
No 322
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=5.6e-28 Score=266.21 Aligned_cols=179 Identities=23% Similarity=0.277 Sum_probs=141.4
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..|+++||+++|+. ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.+++. ..+|
T Consensus 5 ~~l~i~~l~~~y~~-~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p--~~G~i~~~~~--------~~i~ 73 (556)
T PRK11819 5 YIYTMNRVSKVVPP-KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FEGEARPAPG--------IKVG 73 (556)
T ss_pred EEEEEeeEEEEeCC-CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC--------CEEE
Confidence 35777888877741 356777777776666 99999999999998653 4688887641 3589
Q ss_pred EEecCCCCCCCCcHHhHHHHH-----------------------------------------------HHHHHHHHHhcC
Q 042733 97 YCEQNDIHSPHDTLYDFTHCL-----------------------------------------------YMFIEEGMELVE 129 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~~~-----------------------------------------------~~~~~~~l~~l~ 129 (531)
|++|++.+++.+|+.|+.... ..+++++++.+|
T Consensus 74 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 153 (556)
T PRK11819 74 YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALR 153 (556)
T ss_pred EEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCC
Confidence 999999888899998872110 123445667777
Q ss_pred Cchhhhcc-----HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccC
Q 042733 130 LNPFRQAL-----FEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFD 204 (531)
Q Consensus 130 l~~~~~~~-----~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d 204 (531)
+.. .++. .||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++||+++ .+...||
T Consensus 154 l~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tviiisHd~~-~~~~~~d 228 (556)
T PRK11819 154 CPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVVAVTHDRY-FLDNVAG 228 (556)
T ss_pred CCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcC
Confidence 743 3333 39999999999999999999999999999999999999999886 359999999987 4677899
Q ss_pred eEEEEccCceee-ecCCC
Q 042733 205 ELFLLKQVGQEI-SVGPL 221 (531)
Q Consensus 205 ~v~lL~~~G~~v-~~G~~ 221 (531)
++++|++ |+++ +.|+.
T Consensus 229 ~i~~l~~-g~i~~~~g~~ 245 (556)
T PRK11819 229 WILELDR-GRGIPWEGNY 245 (556)
T ss_pred eEEEEeC-CEEEEecCCH
Confidence 9999996 8876 77765
No 323
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.96 E-value=3e-28 Score=292.99 Aligned_cols=189 Identities=16% Similarity=0.185 Sum_probs=159.3
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..|+++||+++|+.+.+.+|+|+|+.++|| |||||||+++|.|..+ .+|+|.++|.+... ..+|+
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di~~i~~~~lR~ 1292 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSWNSVTLQTWRK 1292 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEcccCCHHHHHh
Confidence 369999999999765578999999999999 9999999999999865 36999999988643 45788
Q ss_pred eEEEEecCCCCCCCCcHHhHHH----HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhhC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH----CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~----~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~~ 153 (531)
.++|+||++.+++ -|+++|.. ...+.+.++++..++.+... -+.|||||++|||||+++
T Consensus 1293 ~is~IpQdp~LF~-GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~ 1371 (1490)
T TIGR01271 1293 AFGVIPQKVFIFS-GTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSK 1371 (1490)
T ss_pred ceEEEeCCCccCc-cCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCC
Confidence 9999999999887 59999832 12345667777777754322 223899999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+||+|||||++||+.+...+.+.|++.. +++|||+++|+++ ....||+|++|++ |+++..|++.
T Consensus 1372 ~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~-G~ivE~g~p~ 1436 (1490)
T TIGR01271 1372 AKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG-SSVKQYDSIQ 1436 (1490)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999864 4799999999986 3556999999986 9999999874
No 324
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.2e-27 Score=262.40 Aligned_cols=179 Identities=15% Similarity=0.206 Sum_probs=147.8
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..++++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|. +.+|
T Consensus 318 ~~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~--------~~i~ 385 (530)
T PRK15064 318 NALEVENLTKGFD--NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP--DSGTVKWSEN--------ANIG 385 (530)
T ss_pred ceEEEEeeEEeeC--CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--------eEEE
Confidence 3699999999995 356999999887766 99999999999997653 4688988762 4689
Q ss_pred EEecCCC--CCCCCcHHhHHHH------HHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 97 YCEQNDI--HSPHDTLYDFTHC------LYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 97 yv~Q~~~--~~~~ltv~e~~~~------~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEP 162 (531)
|++|+.. +.+.+|+.++... ....+++.++.+++. +..++.+ ||||||+||++|+.+|++|+||||
T Consensus 386 ~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEP 465 (530)
T PRK15064 386 YYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEP 465 (530)
T ss_pred EEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999864 5567899886321 134567889999984 4555554 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceee-ecCCC
Q 042733 163 ISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI-SVGPL 221 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v-~~G~~ 221 (531)
|+|||+.++..+.+.|+++ +.|||++|||++ .+...||++++|++ |+++ +.|++
T Consensus 466 t~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~ 520 (530)
T PRK15064 466 TNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFSGTY 520 (530)
T ss_pred CCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcCCCH
Confidence 9999999999999999876 459999999987 57778999999986 8887 77764
No 325
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.95 E-value=2e-27 Score=261.66 Aligned_cols=179 Identities=23% Similarity=0.307 Sum_probs=141.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGY 97 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igy 97 (531)
.++++|++++|+ +++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.+++ +..+||
T Consensus 4 ~i~~~nls~~~~-~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p--~~G~i~~~~--------~~~i~~ 72 (552)
T TIGR03719 4 IYTMNRVSKVVP-PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FNGEARPAP--------GIKVGY 72 (552)
T ss_pred EEEEeeEEEecC-CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecC--------CCEEEE
Confidence 578999999985 1356899988887777 99999999999998653 468888764 246999
Q ss_pred EecCCCCCCCCcHHhHHHH--H--------------------H-------------------------HHHHHHHHhcCC
Q 042733 98 CEQNDIHSPHDTLYDFTHC--L--------------------Y-------------------------MFIEEGMELVEL 130 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~~--~--------------------~-------------------------~~~~~~l~~l~l 130 (531)
++|++.+++.+||.|+... . . .++++.++.+++
T Consensus 73 v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 152 (552)
T TIGR03719 73 LPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRC 152 (552)
T ss_pred EeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCC
Confidence 9999988889999887211 0 0 123345566666
Q ss_pred chhhhcc-----HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCe
Q 042733 131 NPFRQAL-----FEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 131 ~~~~~~~-----~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~ 205 (531)
.. .++. .||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++||+++ .+...||+
T Consensus 153 ~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~-~~~~~~d~ 227 (552)
T TIGR03719 153 PP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRY-FLDNVAGW 227 (552)
T ss_pred Cc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcCe
Confidence 42 2333 39999999999999999999999999999999999999999875 359999999987 46778999
Q ss_pred EEEEccCceee-ecCCCC
Q 042733 206 LFLLKQVGQEI-SVGPLG 222 (531)
Q Consensus 206 v~lL~~~G~~v-~~G~~~ 222 (531)
+++|++ |+++ +.|+.+
T Consensus 228 v~~l~~-g~i~~~~g~~~ 244 (552)
T TIGR03719 228 ILELDR-GRGIPWEGNYS 244 (552)
T ss_pred EEEEEC-CEEEEecCCHH
Confidence 999996 8875 777753
No 326
>PRK13409 putative ATPase RIL; Provisional
Probab=99.95 E-value=3.6e-27 Score=259.95 Aligned_cols=193 Identities=18% Similarity=0.219 Sum_probs=152.9
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEE---------EcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceE
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGA---------FRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARIL 95 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~---------i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~i 95 (531)
...++++|+++.|+. ..|+++|+. +||||||||||+|+|+|..++ .+|+|.++ ..+
T Consensus 338 ~~~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p--~~G~I~~~----------~~i 402 (590)
T PRK13409 338 ETLVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP--DEGEVDPE----------LKI 402 (590)
T ss_pred ceEEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEe----------eeE
Confidence 356999999999852 247775554 455599999999999997653 46788764 148
Q ss_pred EEEecCCCCCCCCcHHhHHHH------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCC
Q 042733 96 GYCEQNDIHSPHDTLYDFTHC------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPIS 164 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~~------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPts 164 (531)
+|++|+..+.+.+||+|+... ....++++++.+++.+..++.+ ||||||+||++|+.+|++|+|||||+
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~ 482 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSA 482 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 999999888889999987321 1234678899999987777665 99999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCC---chhHHHHHHhh
Q 042733 165 GLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPS---SIHLISYFEKI 235 (531)
Q Consensus 165 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~---~~~~~~~f~~~ 235 (531)
|||+.++..+.+.|++++++ |.|||++|||+. .+...+|++++|+ |++...|..... .+.+..+++.+
T Consensus 483 ~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 483 HLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHASGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--CcceeeeecCCchhHHHHHHHHHHHc
Confidence 99999999999999999874 899999999987 4677899999995 578777765332 12334455554
No 327
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=1.4e-27 Score=237.58 Aligned_cols=167 Identities=19% Similarity=0.194 Sum_probs=129.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEE-----------EcCcccchh--h-hc--ceEEEEecCCCCCCCCcHH
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNIT-----------VSGYPEKQE--T-FA--RILGYCEQNDIHSPHDTLY 111 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~-----------~~g~~~~~~--~-~~--~~igyv~Q~~~~~~~ltv~ 111 (531)
+.+.+||||||||||||+|+|..++ .+|+|. ++|.+.... . .+ ..++|++|+....+. ++.
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl~~p--~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~ 104 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKLKP--NLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AVK 104 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC--CCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch-HHH
Confidence 4455666799999999999997653 357775 667654321 1 11 247899998776663 544
Q ss_pred hH------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 042733 112 DF------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRN 180 (531)
Q Consensus 112 e~------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~ 180 (531)
++ .......+.++++.+++.+..++.+ |||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 105 ~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~ 184 (255)
T cd03236 105 GKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRE 184 (255)
T ss_pred HHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 43 1122345778899999987666554 999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 181 TVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 181 l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
++++|+|||++||+++ .+...||++++|+ |++.+.|-
T Consensus 185 l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~--~~~~~~~~ 221 (255)
T cd03236 185 LAEDDNYVLVVEHDLA-VLDYLSDYIHCLY--GEPGAYGV 221 (255)
T ss_pred HHhcCCEEEEEECCHH-HHHHhCCEEEEEC--CCCCccee
Confidence 9877999999999986 4666899999995 56776664
No 328
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=2.5e-27 Score=230.88 Aligned_cols=169 Identities=22% Similarity=0.339 Sum_probs=138.5
Q ss_pred EEEEEeEEEEEeCCC-------ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhh
Q 042733 27 YISLNEIVYSVDMPQ-------IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQET 90 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~-------~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~ 90 (531)
.++++||++.|+.+. ..+++|||+.+.+| |||||||-|+|.|+.++ .+|+|.++|.+.....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p--t~G~i~f~g~~i~~~~ 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP--TSGEILFEGKDITKLS 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC--CCceEEEcCcchhhcc
Confidence 356667766665432 25677777777766 99999999999998763 5799999998743211
Q ss_pred hcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCch-hhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCC
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNP-FRQALF-----EQRKRLTVAVEFVANPSIISRDEPIS 164 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPts 164 (531)
.....+++.+.++.+|+.. ..++.. |||||++|||||+.+|+++++|||+|
T Consensus 82 -----------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvS 138 (268)
T COG4608 82 -----------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVS 138 (268)
T ss_pred -----------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchh
Confidence 2345567889999999865 444444 99999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 165 GLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 165 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
.||...+.+++++|+++.++ |.|.++++||.+ -+...+||+.+|.. |+++..|+.+
T Consensus 139 aLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~-G~iVE~g~~~ 195 (268)
T COG4608 139 ALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYL-GKIVEIGPTE 195 (268)
T ss_pred hcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEec-CceeEecCHH
Confidence 99999999999999999975 999999999987 46778999999996 9999999864
No 329
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.95 E-value=3.9e-27 Score=228.51 Aligned_cols=173 Identities=16% Similarity=0.139 Sum_probs=132.2
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEE-EcCcccchhhhcceEEEEecCCCCCCC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNIT-VSGYPEKQETFARILGYCEQNDIHSPH 107 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~-~~g~~~~~~~~~~~igyv~Q~~~~~~~ 107 (531)
.++|+++.++. ..+.+.+||||||||||+|+|+|..++ .+|++. ++|... .+.++..+++.
T Consensus 2 vl~~vs~~i~~------Ge~~~l~G~NGsGKSTLlk~i~Gl~~~--~sG~i~~~~~~~~----------~~~~~~~l~~~ 63 (213)
T PRK15177 2 VLDKTDFVMGY------HEHIGILAAPGSGKTTLTRLLCGLDAP--DEGDFIGLRGDAL----------PLGANSFILPG 63 (213)
T ss_pred eeeeeeEEEcC------CCEEEEECCCCCCHHHHHHHHhCCccC--CCCCEEEecCcee----------ccccccccCCc
Confidence 37888888863 367889999999999999999997543 357775 555321 12245567888
Q ss_pred CcHHhHHHH--------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 042733 108 DTLYDFTHC--------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTV 174 (531)
Q Consensus 108 ltv~e~~~~--------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i 174 (531)
+|+.|+... ..+..+...+..++....++.+ |||||++||++|+.+|++++|||||++||+.++..+
T Consensus 64 ltv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~ 143 (213)
T PRK15177 64 LTGEENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRM 143 (213)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHH
Confidence 999998321 1111223335566666555544 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 175 IRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 175 ~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
.+.+.+..+ ++|+|++||+++ .+...||++++|++ |++++.|+.+
T Consensus 144 ~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 188 (213)
T PRK15177 144 QAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLH-GKITMCEDLA 188 (213)
T ss_pred HHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEEC-CeEEEeCCHH
Confidence 998865443 468999999987 46678999999986 9999998863
No 330
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=6.3e-28 Score=221.87 Aligned_cols=190 Identities=22% Similarity=0.298 Sum_probs=159.3
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcC-cccc---h-hhh
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSG-YPEK---Q-ETF 91 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g-~~~~---~-~~~ 91 (531)
..+.++|++.+++ ...+|+++|+.+.|| ||||||+|++|+|...+ ..|++.+.| .+.. + ...
T Consensus 4 ~iL~~~~vsVsF~--GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp--~~G~v~f~g~~dl~~~~e~~IA 79 (249)
T COG4674 4 IILYLDGVSVSFG--GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP--QEGEVLFDGDTDLTKLPEHRIA 79 (249)
T ss_pred ceEEEeceEEEEc--ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC--CcceEEEcCchhhccCCHHHHH
Confidence 4577888888774 456788888766655 99999999999998654 368999988 3332 1 223
Q ss_pred cceEEEEecCCCCCCCCcHHhH-------------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHH
Q 042733 92 ARILGYCEQNDIHSPHDTLYDF-------------------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVA 147 (531)
Q Consensus 92 ~~~igyv~Q~~~~~~~ltv~e~-------------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA 147 (531)
+.-||--+|-+..|..+||+|| ..+.+.++++.++..||.+.++... ||||++.|+
T Consensus 80 r~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIG 159 (249)
T COG4674 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIG 159 (249)
T ss_pred HhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhh
Confidence 5568888999999999999998 1233467999999999999888776 999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+.++++|++|+||||++|+--....+.-++|+.++. +.+|+++.||+.. +.+++|+|.+|++ |.+...|+.+
T Consensus 160 Mll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~F-vr~~A~~VTVlh~-G~VL~EGsld 231 (249)
T COG4674 160 MLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGF-VREIADKVTVLHE-GSVLAEGSLD 231 (249)
T ss_pred eeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHH-HHHhhheeEEEec-cceeecccHH
Confidence 999999999999999999999999999999999975 6899999999874 7778999999997 9999999864
No 331
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.95 E-value=3.6e-27 Score=214.69 Aligned_cols=134 Identities=25% Similarity=0.319 Sum_probs=113.3
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEe
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCE 99 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~ 99 (531)
+++|+++.|+ +..+++++|+.+.+| |||||||+++|+|..++ .+|+|.++|. +.++|++
T Consensus 2 ~~~~l~~~~~--~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~~~--------~~i~~~~ 69 (144)
T cd03221 2 ELENLSKTYG--GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP--DEGIVTWGST--------VKIGYFE 69 (144)
T ss_pred EEEEEEEEEC--CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCe--------EEEEEEc
Confidence 5677777774 235777777777666 99999999999998653 4789999873 4689999
Q ss_pred cCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 042733 100 QNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVR 179 (531)
Q Consensus 100 Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~ 179 (531)
| .+.|||||++|||+|+.+|++++|||||+|||+.++..+.+.++
T Consensus 70 ~-----------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~ 114 (144)
T cd03221 70 Q-----------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALK 114 (144)
T ss_pred c-----------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 8 33499999999999999999999999999999999999999998
Q ss_pred HHHHcCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 180 NTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 180 ~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
++ ++|++++||+++ ++...||++++|++ |+
T Consensus 115 ~~---~~til~~th~~~-~~~~~~d~v~~l~~-g~ 144 (144)
T cd03221 115 EY---PGTVILVSHDRY-FLDQVATKIIELED-GK 144 (144)
T ss_pred Hc---CCEEEEEECCHH-HHHHhCCEEEEEeC-CC
Confidence 76 479999999986 56678999999985 64
No 332
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.1e-26 Score=216.41 Aligned_cols=201 Identities=22% Similarity=0.263 Sum_probs=169.1
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~ 92 (531)
..|+++||..++..+ +.||++||+.+++| |||||||.++|+|.+.--..+|+|.++|.++.. ++.|
T Consensus 2 ~~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 2 MMLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred ceeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 368999999998632 58999999988766 999999999999987655678999999987642 3456
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH--------------HHHHHHHHHHHhcCCch-hhhccH------HHHHHHHHHHHHh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH--------------CLYMFIEEGMELVELNP-FRQALF------EQRKRLTVAVEFV 151 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~--------------~~~~~~~~~l~~l~l~~-~~~~~~------GerqRv~iA~aL~ 151 (531)
+-+...+|.|.-.|..++.+.-. +....+++.++.+++++ ..++.+ |||||..|+..++
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~ 160 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL 160 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh
Confidence 67889999999999999988611 23456777889999987 566665 8999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhcc--CeEEEEccCceeeecCCCCCCchhHH
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSF--DELFLLKQVGQEISVGPLGPSSIHLI 229 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~--d~v~lL~~~G~~v~~G~~~~~~~~~~ 229 (531)
.+|++.+||||-||||..+-+.+.+.+.++++.|.+++++||+.. +.+.. |+|.+|.+ ||++..|.+ ++.
T Consensus 161 lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r--ll~~i~pD~vhvl~~-GrIv~sG~~-----el~ 232 (251)
T COG0396 161 LEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR--LLDYIKPDKVHVLYD-GRIVKSGDP-----ELA 232 (251)
T ss_pred cCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHhhcCCCEEEEEEC-CEEEecCCH-----HHH
Confidence 999999999999999999999999999999999999999999854 66665 99999996 999999986 466
Q ss_pred HHHHhh
Q 042733 230 SYFEKI 235 (531)
Q Consensus 230 ~~f~~~ 235 (531)
+.+++-
T Consensus 233 ~~le~~ 238 (251)
T COG0396 233 EELEEK 238 (251)
T ss_pred HHHHHh
Confidence 666654
No 333
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=6.7e-27 Score=257.69 Aligned_cols=179 Identities=19% Similarity=0.219 Sum_probs=145.0
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..++++|+++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.+++ + ..+|
T Consensus 323 ~~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~-~-------~~i~ 390 (556)
T PRK11819 323 KVIEAENLSKSFG--DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP--DSGTIKIGE-T-------VKLA 390 (556)
T ss_pred eEEEEEeEEEEEC--CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECC-c-------eEEE
Confidence 4699999999995 457999999888877 99999999999997653 468888843 1 1589
Q ss_pred EEecCC-CCCCCCcHHhHHHH---------HHHHHHHHHHhcCCch-hhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQND-IHSPHDTLYDFTHC---------LYMFIEEGMELVELNP-FRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~-~~~~~ltv~e~~~~---------~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
|++|+. .+++.+|+.|+... .....++.++.+++.+ ..++.+ ||||||+||++|+.+|++|+||
T Consensus 391 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 470 (556)
T PRK11819 391 YVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLD 470 (556)
T ss_pred EEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999986 67888999987321 1223456788999863 345444 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceee-ecCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI-SVGP 220 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v-~~G~ 220 (531)
|||+|||+.++..+.+.|+++. | |||++||+++ .+...||++++|+++|++. +.|+
T Consensus 471 EPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~ 527 (556)
T PRK11819 471 EPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGN 527 (556)
T ss_pred CCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCC
Confidence 9999999999999999999872 4 8999999987 5777899999998546766 4554
No 334
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.95 E-value=1.2e-26 Score=255.65 Aligned_cols=179 Identities=17% Similarity=0.210 Sum_probs=144.4
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.+++ . ..+|
T Consensus 321 ~~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~~-~-------~~i~ 388 (552)
T TIGR03719 321 KVIEAENLSKGFG--DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGE-T-------VKLA 388 (552)
T ss_pred eEEEEeeEEEEEC--CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEECC-c-------eEEE
Confidence 4699999999995 457999999887777 99999999999998653 468888843 1 1589
Q ss_pred EEecCC-CCCCCCcHHhHHHH---------HHHHHHHHHHhcCCch-hhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQND-IHSPHDTLYDFTHC---------LYMFIEEGMELVELNP-FRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~-~~~~~ltv~e~~~~---------~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
|++|+. .+++.+|+.|+... .....++.++.+++.+ ..++.+ ||||||+||++|+.+|++|+||
T Consensus 389 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLD 468 (552)
T TIGR03719 389 YVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLD 468 (552)
T ss_pred EEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 999986 47788999987221 1223557889999864 345444 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceee-ecCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI-SVGP 220 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v-~~G~ 220 (531)
|||+|||+.+++.+.+.|+++. + |||++|||++ .+...||++++|+++|+++ +.|+
T Consensus 469 EPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~ 525 (552)
T TIGR03719 469 EPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGN 525 (552)
T ss_pred CCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCC
Confidence 9999999999999999999873 3 8999999986 4677899999998546766 4454
No 335
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.95 E-value=3.2e-27 Score=282.52 Aligned_cols=180 Identities=18% Similarity=0.260 Sum_probs=146.1
Q ss_pred EEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEc-Ccccc---hhhhc
Q 042733 27 YISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVS-GYPEK---QETFA 92 (531)
Q Consensus 27 ~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~-g~~~~---~~~~~ 92 (531)
.|+++||+++|+.. +.++|+|+|+.+++| |||||||+++|+|..++ .+|+|.++ |.+.. ...+|
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~i~~g~~i~~~~~~~lr 459 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP--TEGDIIINDSHNLKDINLKWWR 459 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC--CCCeEEEeCCcchhhCCHHHHH
Confidence 69999999999743 246999999999988 99999999999998653 46899995 55543 23467
Q ss_pred ceEEEEecCCCCCCCCcHHhHHHH--------------------------------------------------------
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTHC-------------------------------------------------------- 116 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~~-------------------------------------------------------- 116 (531)
+.+|||+|++.+++ .|++|+...
T Consensus 460 ~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 538 (1466)
T PTZ00265 460 SKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMR 538 (1466)
T ss_pred HhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcc
Confidence 88999999998886 599987321
Q ss_pred ------HHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 042733 117 ------LYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTV 174 (531)
Q Consensus 117 ------~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i 174 (531)
..+.+.++++.+++.+..+ .+.|||||++|||||+++|++|+|||||++||+.++..+
T Consensus 539 ~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i 618 (1466)
T PTZ00265 539 KNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV 618 (1466)
T ss_pred cccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence 0123555666666654421 122999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 175 IRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 175 ~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
.+.|+++++ +|+|+|+++|+++. .+.||++++|++
T Consensus 619 ~~~L~~~~~~~g~TvIiIsHrls~--i~~aD~Iivl~~ 654 (1466)
T PTZ00265 619 QKTINNLKGNENRITIIIAHRLST--IRYANTIFVLSN 654 (1466)
T ss_pred HHHHHHHhhcCCCEEEEEeCCHHH--HHhCCEEEEEeC
Confidence 999999976 58999999999863 468999999986
No 336
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=7.1e-27 Score=219.46 Aligned_cols=142 Identities=20% Similarity=0.230 Sum_probs=113.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
++.+.+||||||||||+|+|+|..++ .+|+|.++|. .++|++|+..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~---------~i~~~~q~~~----------------------- 71 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIP--NGDNDEWDGI---------TPVYKPQYID----------------------- 71 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCC--CCcEEEECCE---------EEEEEcccCC-----------------------
Confidence 35566777799999999999997653 4689999874 3789988642
Q ss_pred hcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CeEEEEecCCchHHHhccCe
Q 042733 127 LVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMG-RTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 127 ~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~~~d~ 205 (531)
.+.|||||++|||+|+.+|++++|||||+|||+.++..+.+.++++++++ .|||++||+++ .+...||+
T Consensus 72 ---------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~ 141 (177)
T cd03222 72 ---------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDR 141 (177)
T ss_pred ---------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCE
Confidence 34599999999999999999999999999999999999999999998764 89999999986 46678999
Q ss_pred EEEEccCceeeec--CCCCCCchhHHHHHH
Q 042733 206 LFLLKQVGQEISV--GPLGPSSIHLISYFE 233 (531)
Q Consensus 206 v~lL~~~G~~v~~--G~~~~~~~~~~~~f~ 233 (531)
+++|++ +-.++. |+|....+..-.|+.
T Consensus 142 i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 170 (177)
T cd03222 142 IHVFEG-EPGVYGIASQPKGTREGINRFLR 170 (177)
T ss_pred EEEEcC-CCccceeccCCcchhHHHHHHHH
Confidence 999986 444443 665433333334543
No 337
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.95 E-value=2.1e-27 Score=272.92 Aligned_cols=200 Identities=25% Similarity=0.343 Sum_probs=171.7
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~ 92 (531)
..+..+++++.|+...+ +.+++|+.+++| ||||||++|+|+|..+. .+|++.++|.+... .+.+
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~--t~G~a~i~g~~i~~~~~~~~~~ 639 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP--TSGEALIKGHDITVSTDFQQVR 639 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccC--CcceEEEecCccccccchhhhh
Confidence 45788899999975433 888888777765 99999999999998653 46899999987642 2367
Q ss_pred ceEEEEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 93 RILGYCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
+.+||+||.|.+.+.+|.+|. ....++.++..++.++|.+.+++.+ |+|||+++|.|++.+|++
T Consensus 640 ~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~v 719 (885)
T KOG0059|consen 640 KQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSV 719 (885)
T ss_pred hhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCE
Confidence 889999999999999999998 2244556889999999999998877 899999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCCchhHHHHHHh
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEK 234 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~~~~~~~~f~~ 234 (531)
++|||||+|+||.+++.+++++++++++|+.||+|||..+ |...+|||+.+|.+ |++...|++ +++...|..
T Consensus 720 i~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~-G~l~ciGs~----q~LKsrfG~ 791 (885)
T KOG0059|consen 720 ILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVI-GQLRCIGSP----QELKSRYGS 791 (885)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeec-CeeEEecCh----HHHHhhcCC
Confidence 9999999999999999999999999998889999999987 67789999999996 999999997 455555543
No 338
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.1e-26 Score=259.27 Aligned_cols=180 Identities=21% Similarity=0.279 Sum_probs=145.5
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceE
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARIL 95 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~i 95 (531)
...|+++|+++.|+ ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.+++. ..+
T Consensus 310 ~~~l~~~~l~~~y~--~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~--------~~i 377 (638)
T PRK10636 310 NPLLKMEKVSAGYG--DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP--VSGEIGLAKG--------IKL 377 (638)
T ss_pred CceEEEEeeEEEeC--CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCC--------EEE
Confidence 34699999999995 457999999887776 99999999999997643 3688887631 258
Q ss_pred EEEecCC--CCCCCCcHHhHH-----HHHHHHHHHHHHhcCCch-hhhccH-----HHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 96 GYCEQND--IHSPHDTLYDFT-----HCLYMFIEEGMELVELNP-FRQALF-----EQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 96 gyv~Q~~--~~~~~ltv~e~~-----~~~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~iA~aL~~~p~lllLDEP 162 (531)
||++|+. .+.+..|+.+.. ......+.+.++.+++.. ..++.+ ||||||+||++|+.+|++||||||
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEP 457 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEP 457 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999974 345666776642 122345778899999853 445544 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceee-ecCCC
Q 042733 163 ISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI-SVGPL 221 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v-~~G~~ 221 (531)
|+|||+.++..+.+.|+++ .| |||++|||+. .+...||++++|++ |+++ +.|+.
T Consensus 458 t~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~g~~ 512 (638)
T PRK10636 458 TNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFDGDL 512 (638)
T ss_pred CCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcCCCH
Confidence 9999999999999999987 34 9999999986 47778999999986 8987 77875
No 339
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=4.7e-27 Score=265.81 Aligned_cols=190 Identities=23% Similarity=0.317 Sum_probs=154.7
Q ss_pred ceEEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhh
Q 042733 25 PHYISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETF 91 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~ 91 (531)
.-.|+++||+|+|+.. +.++|+|+|+++.+| ||||||.+-+|-...++ ..|.|.++|.+++. ..+
T Consensus 985 ~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp--~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 985 KGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP--DAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred eeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCCeEEECCcccccCCHHHH
Confidence 4469999999999853 347999999999888 99999999999997663 57999999988754 457
Q ss_pred cceEEEEecCCCCCCCCcHHhHH-----HHHHHHHHHHHHhcC-------CchhhhccH---------HHHHHHHHHHHH
Q 042733 92 ARILGYCEQNDIHSPHDTLYDFT-----HCLYMFIEEGMELVE-------LNPFRQALF---------EQRKRLTVAVEF 150 (531)
Q Consensus 92 ~~~igyv~Q~~~~~~~ltv~e~~-----~~~~~~~~~~l~~l~-------l~~~~~~~~---------GerqRv~iA~aL 150 (531)
|+++|.|.|+|.+| +-|++||. +.....+.++.+..+ |.+-.|+.+ |||||++||||+
T Consensus 1063 R~~i~lVsQEP~LF-~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAi 1141 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLF-NGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAI 1141 (1228)
T ss_pred HHhcceeccCchhh-cccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHH
Confidence 89999999999886 57999982 111222333333333 223334444 899999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++||+||||||.||.||+++.+.+.+.|.+.. .|+|.|++.|+++ ....+|.|.++++ |+++..|+-
T Consensus 1142 lRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~-G~VvE~GtH 1208 (1228)
T KOG0055|consen 1142 LRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKN-GKVVEQGTH 1208 (1228)
T ss_pred HcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEEC-CEEEecccH
Confidence 99999999999999999999999999998874 5899999999987 3678999999996 999999984
No 340
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.94 E-value=3.4e-26 Score=256.13 Aligned_cols=171 Identities=22% Similarity=0.220 Sum_probs=139.2
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..++++|+++.|+. ++.+|+|+|+.+++| |||||||+|+|+|..+. .+|++.+++ ++.++
T Consensus 450 ~~i~~~nv~~~~~~-~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~--~~G~i~~~~--------~~~i~ 518 (659)
T TIGR00954 450 NGIKFENIPLVTPN-GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV--YGGRLTKPA--------KGKLF 518 (659)
T ss_pred CeEEEEeeEEECCC-CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEeecC--------CCcEE
Confidence 35899999999853 347999999998887 99999999999997553 246776643 45799
Q ss_pred EEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCchhhhc--------------cHHHHHHHHHHHHH
Q 042733 97 YCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNPFRQA--------------LFEQRKRLTVAVEF 150 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~~~~~--------------~~GerqRv~iA~aL 150 (531)
|++|++.+++. |++|+.. ...+.+++.++.+++.+..++ +.|||||++|||+|
T Consensus 519 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal 597 (659)
T TIGR00954 519 YVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLF 597 (659)
T ss_pred EECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHH
Confidence 99999987776 9999721 113456778888888765432 33999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCc
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVG 213 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G 213 (531)
+++|++++|||||+|||+.+++.+.+.+++ .|+|+|+++|+++ ..+.||++++|+.+|
T Consensus 598 ~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~~~g 655 (659)
T TIGR00954 598 YHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMDGRG 655 (659)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEeCCC
Confidence 999999999999999999999999998876 3899999999987 357899999997544
No 341
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.4e-26 Score=237.03 Aligned_cols=187 Identities=21% Similarity=0.313 Sum_probs=147.9
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
.-.++++|++|.|. +.+++|+|||++++|| ||||||++|+|....+. .+|.|.++|.+++. ...|
T Consensus 535 ~G~i~fsnvtF~Y~-p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv--~sGsI~iDgqdIrnvt~~SLR 611 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYD-PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV--NSGSITIDGQDIRNVTQSSLR 611 (790)
T ss_pred CCeEEEEEeEEecC-CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc--cCceEEEcCchHHHHHHHHHH
Confidence 34789999999997 5779999999999999 99999999999997552 46899999998753 5678
Q ss_pred ceEEEEecCCCCCCCCcHHhH---------HHH-----HHHHHHHHHHhcCCchhhhccH---------HHHHHHHHHHH
Q 042733 93 RILGYCEQNDIHSPHDTLYDF---------THC-----LYMFIEEGMELVELNPFRQALF---------EQRKRLTVAVE 149 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~---------~~~-----~~~~~~~~l~~l~l~~~~~~~~---------GerqRv~iA~a 149 (531)
+.||.||||..++. .|+..+ .++ +...+.+. .++..+-.++.+ ||||||+|||+
T Consensus 612 s~IGVVPQDtvLFN-dTI~yNIryak~~AsneevyaAAkAA~IHdr--Il~fPegY~t~VGERGLkLSGGEKQRVAiARt 688 (790)
T KOG0056|consen 612 SSIGVVPQDTVLFN-DTILYNIRYAKPSASNEEVYAAAKAAQIHDR--ILQFPEGYNTRVGERGLKLSGGEKQRVAIART 688 (790)
T ss_pred HhcCcccCcceeec-ceeeeheeecCCCCChHHHHHHHHHhhHHHH--HhcCchhhhhhhhhcccccCCcchhhHHHHHH
Confidence 99999999977653 444333 111 11112221 123333333333 89999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++++|.+++|||.||.||..+.+.+...|.++++ ++|-|++.|..+. .-.+|.++++++ |+++..|.-
T Consensus 689 iLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST--ivnAD~ILvi~~-G~IvErG~H 756 (790)
T KOG0056|consen 689 ILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST--IVNADLILVISN-GRIVERGRH 756 (790)
T ss_pred HhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh--eecccEEEEEeC-CeEeecCcH
Confidence 9999999999999999999999999999999986 6888999999873 346899999996 999999974
No 342
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=9.5e-26 Score=251.74 Aligned_cols=176 Identities=16% Similarity=0.195 Sum_probs=134.6
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
|+++||+++|+ ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.. .++|+
T Consensus 2 i~i~nls~~~g--~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p--d~G~I~~~~~~--------~i~~~ 69 (638)
T PRK10636 2 IVFSSLQIRRG--VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISA--DGGSYTFPGNW--------QLAWV 69 (638)
T ss_pred EEEEEEEEEeC--CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCCC--------EEEEE
Confidence 68899999995 457899999887776 99999999999997543 46888887742 36777
Q ss_pred ecCCCCCCCCcHHhH------------------------------HH--------HHHHHHHHHHHhcCCc-hhhhccH-
Q 042733 99 EQNDIHSPHDTLYDF------------------------------TH--------CLYMFIEEGMELVELN-PFRQALF- 138 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~------------------------------~~--------~~~~~~~~~l~~l~l~-~~~~~~~- 138 (531)
+|+.... ..++.+. .. ....+++++++.+|+. +..++.+
T Consensus 70 ~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 148 (638)
T PRK10636 70 NQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS 148 (638)
T ss_pred ecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchh
Confidence 7643221 1222111 00 0123567788999986 3445443
Q ss_pred ----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 139 ----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 139 ----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+...||++++|++ |+
T Consensus 149 ~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~~~d~i~~L~~-G~ 223 (638)
T PRK10636 149 DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDPIVDKIIHIEQ-QS 223 (638)
T ss_pred hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHHhcCEEEEEeC-CE
Confidence 9999999999999999999999999999999999999998775 569999999976 46778999999986 88
Q ss_pred ee-ecCCC
Q 042733 215 EI-SVGPL 221 (531)
Q Consensus 215 ~v-~~G~~ 221 (531)
+. |.|+.
T Consensus 224 i~~~~g~~ 231 (638)
T PRK10636 224 LFEYTGNY 231 (638)
T ss_pred EEEecCCH
Confidence 85 56654
No 343
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=7.8e-26 Score=208.77 Aligned_cols=144 Identities=28% Similarity=0.499 Sum_probs=117.1
Q ss_pred EEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceEEE
Q 042733 30 LNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARILGY 97 (531)
Q Consensus 30 ~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~igy 97 (531)
++++++.|+ ++.+++++++.+.+| |||||||+++|+|..+. ..|++.++|.+... ...++.++|
T Consensus 2 ~~~~~~~~~--~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~ 77 (157)
T cd00267 2 IENLSFRYG--GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP--TSGEILIDGKDIAKLPLEELRRRIGY 77 (157)
T ss_pred eEEEEEEeC--CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccCCHHHHHhceEE
Confidence 456666664 234666666666555 99999999999997653 46899999975432 235567999
Q ss_pred EecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 042733 98 CEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRM 177 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~ 177 (531)
++| .+.|||||++||++++.+|++++|||||+|||+.++..+.+.
T Consensus 78 ~~q-----------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~ 122 (157)
T cd00267 78 VPQ-----------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122 (157)
T ss_pred Eee-----------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 998 334999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 178 VRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 178 L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
+++++++++|++++||+++ ++...||+++.+++ |+
T Consensus 123 l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g~ 157 (157)
T cd00267 123 LRELAEEGRTVIIVTHDPE-LAELAADRVIVLKD-GK 157 (157)
T ss_pred HHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-cC
Confidence 9998777899999999986 46667899999985 54
No 344
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=6.5e-26 Score=212.76 Aligned_cols=153 Identities=21% Similarity=0.260 Sum_probs=118.5
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHD 108 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~l 108 (531)
.++|+|++++. .++.+.+||||||||||||+|.+ + +|++.+++.... ..++.++|++|
T Consensus 10 ~l~~isl~i~~------G~~~~l~G~nG~GKSTLl~~il~--~----~G~v~~~~~~~~--~~~~~~~~~~q-------- 67 (176)
T cd03238 10 NLQNLDVSIPL------NVLVVVTGVSGSGKSTLVNEGLY--A----SGKARLISFLPK--FSRNKLIFIDQ-------- 67 (176)
T ss_pred eecceEEEEcC------CCEEEEECCCCCCHHHHHHHHhh--c----CCcEEECCcccc--cccccEEEEhH--------
Confidence 47788888763 25677888889999999999974 2 467777765321 12334788877
Q ss_pred cHHhHHHHHHHHHHHHHHhcCCchh-hhcc-----HHHHHHHHHHHHHhhC--CCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 042733 109 TLYDFTHCLYMFIEEGMELVELNPF-RQAL-----FEQRKRLTVAVEFVAN--PSIISRDEPISGLDARAATTVIRMVRN 180 (531)
Q Consensus 109 tv~e~~~~~~~~~~~~l~~l~l~~~-~~~~-----~GerqRv~iA~aL~~~--p~lllLDEPtsgLD~~~~~~i~~~L~~ 180 (531)
.+.++.+++... .+.. .|||||++||++|+.+ |++++|||||+|||+.+++.+.+.|++
T Consensus 68 -------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~ 134 (176)
T cd03238 68 -------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG 134 (176)
T ss_pred -------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 235666776542 3333 3999999999999999 999999999999999999999999999
Q ss_pred HHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 181 TVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 181 l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
++++|+|||++||+++. + +.+|++++|.+ |+..+.|
T Consensus 135 ~~~~g~tvIivSH~~~~-~-~~~d~i~~l~~-g~~~~~~ 170 (176)
T cd03238 135 LIDLGNTVILIEHNLDV-L-SSADWIIDFGP-GSGKSGG 170 (176)
T ss_pred HHhCCCEEEEEeCCHHH-H-HhCCEEEEECC-CCCCCCc
Confidence 98779999999999863 4 67999999975 5544333
No 345
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.94 E-value=1.1e-25 Score=251.44 Aligned_cols=180 Identities=19% Similarity=0.256 Sum_probs=143.3
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceE
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARIL 95 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~i 95 (531)
...|+++||+++|+ ++.+|+++|+.+.+| |||||||||+|+|..++ .+|+|.+ |.. -.+
T Consensus 317 ~~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~-~~~-------~~i 384 (635)
T PRK11147 317 KIVFEMENVNYQID--GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA--DSGRIHC-GTK-------LEV 384 (635)
T ss_pred CceEEEeeeEEEEC--CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEE-CCC-------cEE
Confidence 34699999999995 457999999887776 99999999999997543 4688887 432 158
Q ss_pred EEEecCC-CCCCCCcHHhHHHH---------HHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHHHHhhCCCeEEE
Q 042733 96 GYCEQND-IHSPHDTLYDFTHC---------LYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAVEFVANPSIISR 159 (531)
Q Consensus 96 gyv~Q~~-~~~~~ltv~e~~~~---------~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~aL~~~p~lllL 159 (531)
||++|+. .+++.+||.|+... ....+.+.++.+++. +..++.+ ||||||+||++|+.+|++|||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlL 464 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLIL 464 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999975 57888999987321 123456778888885 3444444 999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeee-cCC
Q 042733 160 DEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS-VGP 220 (531)
Q Consensus 160 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~-~G~ 220 (531)
||||+|||+.++..+.+.|+++ +.|||++|||.. .+...||+++++.++|++.. .|+
T Consensus 465 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~ 522 (635)
T PRK11147 465 DEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGG 522 (635)
T ss_pred cCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCC
Confidence 9999999999999999999876 459999999976 46778999999972377754 444
No 346
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=1.1e-26 Score=208.83 Aligned_cols=170 Identities=21% Similarity=0.260 Sum_probs=138.5
Q ss_pred CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcceEEEEecCCCCCCCC
Q 042733 41 QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARILGYCEQNDIHSPHD 108 (531)
Q Consensus 41 ~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~igyv~Q~~~~~~~l 108 (531)
+..+|+++|+.+.+| |||||||+|+++.+.++ .+|.+.+.|.+.. .+.+|+.++||.|.+.+++ .
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp--~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg-~ 91 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG-D 91 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC--CCceEEEcCccccccChHHHHHHHHHHHcCccccc-c
Confidence 345666666666655 99999999999998764 5799999998764 3568899999999999886 6
Q ss_pred cHHhH---------HHHHHHHHHHHHHhcCCchh------hhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 042733 109 TLYDF---------THCLYMFIEEGMELVELNPF------RQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATT 173 (531)
Q Consensus 109 tv~e~---------~~~~~~~~~~~l~~l~l~~~------~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~ 173 (531)
||+++ .........+.++.+++.+. .+.+.|||||++|+|.|..-|+||+||||||.||+.+++.
T Consensus 92 tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ 171 (223)
T COG4619 92 TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRN 171 (223)
T ss_pred chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHH
Confidence 89887 11123456677888888653 2333499999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HcCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 174 VIRMVRNTV-DMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 174 i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
+-+++.++. .+.+.++.+|||++. ..+.+|+++-+.. |++
T Consensus 172 ie~mi~~~v~~q~vAv~WiTHd~dq-a~rha~k~itl~~-G~~ 212 (223)
T COG4619 172 IEEMIHRYVREQNVAVLWITHDKDQ-AIRHADKVITLQP-GHA 212 (223)
T ss_pred HHHHHHHHhhhhceEEEEEecChHH-HhhhhheEEEecc-Ccc
Confidence 999999887 568999999999984 5678999999986 653
No 347
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=1.3e-25 Score=204.47 Aligned_cols=206 Identities=18% Similarity=0.236 Sum_probs=159.0
Q ss_pred hhhhhhcccCCC---ccccccceEEEEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcC
Q 042733 7 AAIEANNHNKRG---MVLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSG 83 (531)
Q Consensus 7 ~~i~~~~~~~~~---~~~~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g 83 (531)
..+||+|++|.. +.+......=.++.+||+...+. --..+|.||||||||.|+|+|..++ .+|++.+||
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~Q------TlaiIG~NGSGKSTLakMlaGmi~P--TsG~il~n~ 74 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQ------TLAIIGENGSGKSTLAKMLAGMIEP--TSGEILIND 74 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCc------EEEEEccCCCcHhHHHHHHhcccCC--CCceEEECC
Confidence 358888888862 22222222235667777775322 2356788899999999999998764 579999999
Q ss_pred cccch---hhhcceEEEEecCCC--CCCCCcHHhH------------HHHHHHHHHHHHHhcCCch-hhhccH-----HH
Q 042733 84 YPEKQ---ETFARILGYCEQNDI--HSPHDTLYDF------------THCLYMFIEEGMELVELNP-FRQALF-----EQ 140 (531)
Q Consensus 84 ~~~~~---~~~~~~igyv~Q~~~--~~~~ltv~e~------------~~~~~~~~~~~l~~l~l~~-~~~~~~-----Ge 140 (531)
.+..- ....+.|-+++|+++ +-|.+.+.+. ...+.+++-+.++.+||-+ .++-.+ ||
T Consensus 75 ~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~Q 154 (267)
T COG4167 75 HPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQ 154 (267)
T ss_pred ccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchh
Confidence 87532 233467899999975 4455555443 2445667888899999854 344433 99
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 141 RKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 141 rqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
||||++||||+.+|++++.||..++||...+-++.++..++.++ |.+-|.++.+.. -+.+..|+|++|++ |+++..|
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~E-G~vvE~G 232 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHE-GEVVERG 232 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEec-CceeecC
Confidence 99999999999999999999999999999999999999999865 999999999987 47789999999997 9999999
Q ss_pred CCC
Q 042733 220 PLG 222 (531)
Q Consensus 220 ~~~ 222 (531)
.+.
T Consensus 233 ~t~ 235 (267)
T COG4167 233 STA 235 (267)
T ss_pred Chh
Confidence 864
No 348
>PLN03073 ABC transporter F family; Provisional
Probab=99.93 E-value=1.4e-25 Score=251.79 Aligned_cols=178 Identities=19% Similarity=0.192 Sum_probs=138.8
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..++++|+++.|+. .+.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.+++ +..+|
T Consensus 507 ~~L~~~~ls~~y~~-~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~--------~~~ig 575 (718)
T PLN03073 507 PIISFSDASFGYPG-GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSA--------KVRMA 575 (718)
T ss_pred ceEEEEeeEEEeCC-CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECC--------ceeEE
Confidence 56999999999952 346899999877766 99999999999997653 357887754 23589
Q ss_pred EEecCCCCCCCCcHHhHH---------HHHHHHHHHHHHhcCCch-hhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 97 YCEQNDIHSPHDTLYDFT---------HCLYMFIEEGMELVELNP-FRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~---------~~~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
|++|+.. ..+++.++. ......+.+.++.+++.+ ..++.+ ||||||+||++|+.+|++|+|||
T Consensus 576 yv~Q~~~--~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDE 653 (718)
T PLN03073 576 VFSQHHV--DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDE 653 (718)
T ss_pred EEecccc--ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999752 233333220 011345677899999873 444443 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceee-ecCCC
Q 042733 162 PISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI-SVGPL 221 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v-~~G~~ 221 (531)
||+|||+.++..+.+.|++. +| |||++|||+. .+...||++++|.+ |+++ +.|+.
T Consensus 654 PT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~~ 709 (718)
T PLN03073 654 PSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGTF 709 (718)
T ss_pred CCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCCH
Confidence 99999999999998888764 34 9999999987 46778999999986 8988 67764
No 349
>PLN03232 ABC transporter C family member; Provisional
Probab=99.93 E-value=8.5e-26 Score=272.27 Aligned_cols=181 Identities=20% Similarity=0.232 Sum_probs=143.6
Q ss_pred eEEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceE
Q 042733 26 HYISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARIL 95 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~i 95 (531)
..++++|++++|+.. ++++|+|+|+.+++| |||||||+++|.|..++ .+|++. .+++.+
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~G~i~---------~~~~~I 681 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH--AETSSV---------VIRGSV 681 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc--cCCCEE---------EecCcE
Confidence 368999999999742 357999999999998 99999999999997653 233331 246679
Q ss_pred EEEecCCCCCCCCcHHhHH----HHHHHHHHHHHHhcCCchhhh-------cc---------HHHHHHHHHHHHHhhCCC
Q 042733 96 GYCEQNDIHSPHDTLYDFT----HCLYMFIEEGMELVELNPFRQ-------AL---------FEQRKRLTVAVEFVANPS 155 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~----~~~~~~~~~~l~~l~l~~~~~-------~~---------~GerqRv~iA~aL~~~p~ 155 (531)
+||+|++.++. .|++||. ....++.+++++..++.+..+ +. .|||||++||||+.++|+
T Consensus 682 ayv~Q~p~Lf~-gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 760 (1495)
T PLN03232 682 AYVPQVSWIFN-ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1495)
T ss_pred EEEcCcccccc-ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCC
Confidence 99999998874 6999982 123345666776666644222 22 289999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 156 IISRDEPISGLDARAATTVIRM-VRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+++||||||+||+++++++++. ++.. .+++|+|++||+++ ....+|+|++|++ |+++..|+.+
T Consensus 761 IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~-G~i~~~Gt~~ 824 (1495)
T PLN03232 761 IYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSE-GMIKEEGTFA 824 (1495)
T ss_pred EEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeC-CEEEEecCHH
Confidence 9999999999999999998765 4443 36899999999986 4667999999986 9999999864
No 350
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.93 E-value=2.1e-25 Score=224.66 Aligned_cols=194 Identities=18% Similarity=0.300 Sum_probs=156.2
Q ss_pred EEEEEeEEEEEeCC--CccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccc---hh
Q 042733 27 YISLNEIVYSVDMP--QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEK---QE 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~--~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~---~~ 89 (531)
-++++||+..+... ...++++||+.+.+| |||||-..+.+.|+.+. ...+|+|.++|.+.- +.
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 47888888887633 347899999999988 99999999999996543 234789999998642 22
Q ss_pred hhc----ceEEEEecCCC--CCCCCcHHhH------------HHHHHHHHHHHHHhcCCchhhhccH--------HHHHH
Q 042733 90 TFA----RILGYCEQNDI--HSPHDTLYDF------------THCLYMFIEEGMELVELNPFRQALF--------EQRKR 143 (531)
Q Consensus 90 ~~~----~~igyv~Q~~~--~~~~ltv~e~------------~~~~~~~~~~~l~~l~l~~~~~~~~--------GerqR 143 (531)
..+ .+|++++|++. +.|-.|+... ....+.++.+.++.+|+.+-..+.- |||||
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQR 165 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQR 165 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhH
Confidence 222 47999999975 4555566543 2334566778889999876443322 99999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 144 v~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|.||+||+.+|++||.||||+.||..-+.+|+++|+++.++ |.+++++|||++. +-..+|||.+|.+ |+++..|+.+
T Consensus 166 VMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i-Vr~~ADrV~VM~~-G~ivE~~~t~ 243 (534)
T COG4172 166 VMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI-VRKFADRVYVMQH-GEIVETGTTE 243 (534)
T ss_pred HHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH-HHHhhhhEEEEec-cEEeecCcHH
Confidence 99999999999999999999999999999999999999875 9999999999874 6678899999986 9999999864
No 351
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=4.7e-25 Score=211.05 Aligned_cols=176 Identities=23% Similarity=0.214 Sum_probs=145.4
Q ss_pred cccccEEEEEc---------CCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhH
Q 042733 43 GDLNSLSGAFR---------PGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDF 113 (531)
Q Consensus 43 ~iL~~vs~~i~---------~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~ 113 (531)
.+|+|||+++. +||||||||||+|+|..++ .+|++.++|.....-. -.. .+.|.+|.+||
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~P--t~G~v~v~G~v~~li~--lg~-------Gf~pelTGreN 109 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKP--TSGKVKVTGKVAPLIE--LGA-------GFDPELTGREN 109 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCC--CCceEEEcceEehhhh--ccc-------CCCcccchHHH
Confidence 46666665555 4599999999999997653 4789999886432111 112 34467899998
Q ss_pred -----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 042733 114 -----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRM 177 (531)
Q Consensus 114 -----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~ 177 (531)
..+.+..++++++.-+|.++.|.++ ||+-|+++|.+...+|++|++||-.+-.|+.-+++..+.
T Consensus 110 i~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~r 189 (249)
T COG1134 110 IYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLER 189 (249)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHH
Confidence 3556678899999999999988887 999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCCchhHHHHHHhh
Q 042733 178 VRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKI 235 (531)
Q Consensus 178 L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~~~~~~~~f~~~ 235 (531)
++++.++++|+|++||+++ .+.+.||++++|++ |++...|.+ +++.++|++.
T Consensus 190 l~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~-G~i~~~G~~----~~vi~~Y~~~ 241 (249)
T COG1134 190 LNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEH-GQIRMEGSP----EEVIPAYEED 241 (249)
T ss_pred HHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeC-CEEEEcCCH----HHHHHHHHHh
Confidence 9999888899999999988 58899999999996 999999997 4566766553
No 352
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.93 E-value=3.3e-25 Score=247.64 Aligned_cols=178 Identities=22% Similarity=0.244 Sum_probs=130.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGY 97 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igy 97 (531)
.|+++|++++|+ .+.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.. .++|
T Consensus 3 ~l~i~~ls~~~~--~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p--~~G~I~~~~~~--------~~~~ 70 (635)
T PRK11147 3 LISIHGAWLSFS--DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLL--DDGRIIYEQDL--------IVAR 70 (635)
T ss_pred EEEEeeEEEEeC--CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEeCCCC--------EEEE
Confidence 467888888885 356888888777766 99999999999997543 46888887631 1345
Q ss_pred EecCCCCCCCCcHHhH------------------------------H---------------HHHHHHHHHHHHhcCCch
Q 042733 98 CEQNDIHSPHDTLYDF------------------------------T---------------HCLYMFIEEGMELVELNP 132 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~------------------------------~---------------~~~~~~~~~~l~~l~l~~ 132 (531)
++|.+......++.+. . .....+++++++.+|+..
T Consensus 71 l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 150 (635)
T PRK11147 71 LQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP 150 (635)
T ss_pred eccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC
Confidence 5553321111122111 0 011235677788888852
Q ss_pred ---hhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE
Q 042733 133 ---FRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL 209 (531)
Q Consensus 133 ---~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL 209 (531)
....+.||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||+. .+...||+++.|
T Consensus 151 ~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~-~l~~~~d~i~~L 226 (635)
T PRK11147 151 DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRS-FIRNMATRIVDL 226 (635)
T ss_pred CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHH-HHHHhcCeEEEE
Confidence 1222339999999999999999999999999999999999999999887 359999999986 466789999999
Q ss_pred ccCceee-ecCCC
Q 042733 210 KQVGQEI-SVGPL 221 (531)
Q Consensus 210 ~~~G~~v-~~G~~ 221 (531)
++ |+++ +.|+.
T Consensus 227 ~~-G~i~~~~g~~ 238 (635)
T PRK11147 227 DR-GKLVSYPGNY 238 (635)
T ss_pred EC-CEEEEecCCH
Confidence 86 8887 55654
No 353
>PLN03130 ABC transporter C family member; Provisional
Probab=99.93 E-value=2e-25 Score=269.49 Aligned_cols=179 Identities=21% Similarity=0.295 Sum_probs=144.7
Q ss_pred EEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEE-EEEEEcCcccchhhhcceE
Q 042733 27 YISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYIT-RNITVSGYPEKQETFARIL 95 (531)
Q Consensus 27 ~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~-G~i~~~g~~~~~~~~~~~i 95 (531)
.++++|++++|+.. ++++|+|+|+.+++| |||||||+++|.|..+. .+ |+|.+ ++.+
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~GG~I~l----------~~~I 681 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP--RSDASVVI----------RGTV 681 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc--CCCceEEE----------cCeE
Confidence 68999999999743 357999999999998 99999999999997652 35 66653 4579
Q ss_pred EEEecCCCCCCCCcHHhHH----HHHHHHHHHHHHhcCCchhhh-------ccH---------HHHHHHHHHHHHhhCCC
Q 042733 96 GYCEQNDIHSPHDTLYDFT----HCLYMFIEEGMELVELNPFRQ-------ALF---------EQRKRLTVAVEFVANPS 155 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~----~~~~~~~~~~l~~l~l~~~~~-------~~~---------GerqRv~iA~aL~~~p~ 155 (531)
+||+|++.++. .|++||. ....++.+++++..++.+..+ +.+ |||||++||||+.++|+
T Consensus 682 ayv~Q~p~Lfn-gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~ 760 (1622)
T PLN03130 682 AYVPQVSWIFN-ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1622)
T ss_pred EEEcCccccCC-CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 99999998874 7999982 123455667777766654322 222 89999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 156 IISRDEPISGLDARAATTVIR-MVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+++||||||+||+++.+++.+ .++... +|+|+|++||+++ ....+|+|++|++ |+++..|+.+
T Consensus 761 IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~-G~i~e~Gt~~ 824 (1622)
T PLN03130 761 VYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHE-GMIKEEGTYE 824 (1622)
T ss_pred EEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeC-CEEEEeCCHH
Confidence 999999999999999998875 555543 5899999999985 4677999999986 9999999864
No 354
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=4e-25 Score=206.44 Aligned_cols=203 Identities=24% Similarity=0.275 Sum_probs=151.3
Q ss_pred EEEeEEEEEeC---CCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchh---hhcc
Q 042733 29 SLNEIVYSVDM---PQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQE---TFAR 93 (531)
Q Consensus 29 ~~~~ls~~~~~---~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~---~~~~ 93 (531)
+++|+++.+.. .++++|+++|+.+..| |||||||+|+|+|..+. .+|.|.++|.+++.. ....
T Consensus 3 ~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~--t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP--TSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred ccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcccc--CCceEEECceecccCCHHHHhh
Confidence 44555555432 2346888888766655 99999999999997652 578999999887542 2234
Q ss_pred eEEEEecCCC--CCCCCcHHhHH-----------------HHHHHHHHHHHHhc--CCchhhhccH-----HHHHHHHHH
Q 042733 94 ILGYCEQNDI--HSPHDTLYDFT-----------------HCLYMFIEEGMELV--ELNPFRQALF-----EQRKRLTVA 147 (531)
Q Consensus 94 ~igyv~Q~~~--~~~~ltv~e~~-----------------~~~~~~~~~~l~~l--~l~~~~~~~~-----GerqRv~iA 147 (531)
.++-|+|++. ..+.+|+.|+- ..++....+.++.+ |+++..+..+ ||||-++++
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~ 160 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLL 160 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHH
Confidence 5667899874 58999999981 11222334445544 4566666655 899999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCC--
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPS-- 224 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~-- 224 (531)
+|-++.|++|+|||-|++|||.++..+++.-.++.++ +.|.+++||.+. +...+-+|.++|++ |+|+.+-.-++.
T Consensus 161 MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~-G~IvlDv~g~~k~~ 238 (263)
T COG1101 161 MATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHS-GKIVLDVTGEEKAS 238 (263)
T ss_pred HHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeC-CeEEEEcccccccC
Confidence 9999999999999999999999999999999988764 789999999987 56788899999996 999976433221
Q ss_pred --chhHHHHHHhh
Q 042733 225 --SIHLISYFEKI 235 (531)
Q Consensus 225 --~~~~~~~f~~~ 235 (531)
..++.+.|+.+
T Consensus 239 L~v~dli~~F~~~ 251 (263)
T COG1101 239 LTVLDLIQMFEKI 251 (263)
T ss_pred CcHHHHHHHHHHH
Confidence 23555666654
No 355
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.93 E-value=5.3e-25 Score=265.74 Aligned_cols=180 Identities=19% Similarity=0.268 Sum_probs=141.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGY 97 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igy 97 (531)
.++++|++++|+..++++|+|+|+.+++| |||||||+|+|+|..++ .+|++.++| .++|
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~--~~G~i~~~g----------~i~y 703 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKG----------SVAY 703 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc--CCcEEEECC----------EEEE
Confidence 68999999999744467999999998888 99999999999997653 468888876 4899
Q ss_pred EecCCCCCCCCcHHhHHH----HHHHHHHHHHHhcCCch----------------hhhccHHHHHHHHHHHHHhhCCCeE
Q 042733 98 CEQNDIHSPHDTLYDFTH----CLYMFIEEGMELVELNP----------------FRQALFEQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~----~~~~~~~~~l~~l~l~~----------------~~~~~~GerqRv~iA~aL~~~p~ll 157 (531)
|+|++.++ +.|++|+.. ...+..+++++..++.+ -.+.+.|||||++||||++.+|+++
T Consensus 704 v~Q~~~l~-~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~il 782 (1522)
T TIGR00957 704 VPQQAWIQ-NDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 782 (1522)
T ss_pred EcCCcccc-CCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99998765 579999821 11122333333332211 1122339999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHH--HcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTV--DMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~--~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||++||+.+++.+.+.+.+.. .+|+|+|++||+++. ...+|++++|++ |+++..|+.+
T Consensus 783 lLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ii~l~~-G~i~~~g~~~ 846 (1522)
T TIGR00957 783 LFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMSG-GKISEMGSYQ 846 (1522)
T ss_pred EEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCEEEEecC-CeEEeeCCHH
Confidence 9999999999999999999987542 357999999999863 456999999986 9999999864
No 356
>PRK13409 putative ATPase RIL; Provisional
Probab=99.93 E-value=2.3e-25 Score=245.64 Aligned_cols=175 Identities=20% Similarity=0.198 Sum_probs=134.5
Q ss_pred eEEEEEeCCCcccccc--------EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEE-----------EcCcccchh--h
Q 042733 32 EIVYSVDMPQIGDLNS--------LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNIT-----------VSGYPEKQE--T 90 (531)
Q Consensus 32 ~ls~~~~~~~~~iL~~--------vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~-----------~~g~~~~~~--~ 90 (531)
+++++|+. +..+|++ +.+.+||||||||||+|+|+|..++ ..|++. ++|.+.... .
T Consensus 78 ~~~~~yg~-~~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p--~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGV-NGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIP--NLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecC-CceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccC--CCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 37777752 2234544 5577888899999999999997553 357776 777654321 1
Q ss_pred ---hcceEEEEecCCCCCCC---CcHHhHHH--HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 91 ---FARILGYCEQNDIHSPH---DTLYDFTH--CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 91 ---~~~~igyv~Q~~~~~~~---ltv~e~~~--~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
.+..+++.+|.....|. .||.|+.. .....++++++.+++.+..++.+ ||||||+||++|+.+|+++
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~ll 234 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFY 234 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 12335666665444333 38887632 22356788999999987777665 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
+|||||++||+.++..+.+.|+++++ |+|||+++|+++ .+...+|++++|.+
T Consensus 235 lLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~ 286 (590)
T PRK13409 235 FFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYG 286 (590)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 99999999999999999999999988 999999999987 57788999999963
No 357
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.3e-24 Score=196.58 Aligned_cols=190 Identities=23% Similarity=0.289 Sum_probs=138.6
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcc---c-----chh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYP---E-----KQE 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~---~-----~~~ 89 (531)
-++++++|+.|. ...-.+||||.+-|| ||||||||+||+++..+ ..|++.+.-.. . .+.
T Consensus 6 LL~V~~lsk~Yg--~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p--~~G~v~Y~~r~~~~~dl~~msEa 81 (258)
T COG4107 6 LLSVSGLSKLYG--PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTP--DAGTVTYRMRDGQPRDLYTMSEA 81 (258)
T ss_pred ceeehhhhhhhC--CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCC--CCCeEEEEcCCCCchhHhhhchH
Confidence 467778887775 344567777777777 99999999999998653 35677665422 1 111
Q ss_pred ----hhcceEEEEecCCCCCCCCcH------HhH--------HHHHHHHHHHHHHhcCCchh--hhcc----HHHHHHHH
Q 042733 90 ----TFARILGYCEQNDIHSPHDTL------YDF--------THCLYMFIEEGMELVELNPF--RQAL----FEQRKRLT 145 (531)
Q Consensus 90 ----~~~~~igyv~Q~~~~~~~ltv------~e~--------~~~~~~~~~~~l~~l~l~~~--~~~~----~GerqRv~ 145 (531)
-.|..-|+|.|++.-=-.++| .|- -...+....+.++.++++.. .|.. .|+|||+.
T Consensus 82 eRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQ 161 (258)
T COG4107 82 ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQ 161 (258)
T ss_pred HHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHH
Confidence 134467999998653222332 221 01223445567777776532 2222 29999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||-|++.|+++|+||||.|||..-+.+++++++.+..+ |.+++++|||... +.-++||.++|++ |+++..|-.+
T Consensus 162 iARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V-arLla~rlmvmk~-g~vve~GLTD 237 (258)
T COG4107 162 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLADRLMVMKQ-GQVVESGLTD 237 (258)
T ss_pred HHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH-HHHhhhcceeecC-CCEecccccc
Confidence 999999999999999999999999999999999999876 9999999999763 3346899999986 9999998654
No 358
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.1e-25 Score=202.76 Aligned_cols=145 Identities=25% Similarity=0.302 Sum_probs=120.9
Q ss_pred EEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEEEEecCCCCCCCCcHHhHHHH--------HHHH
Q 042733 51 AFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILGYCEQNDIHSPHDTLYDFTHC--------LYMF 120 (531)
Q Consensus 51 ~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~igyv~Q~~~~~~~ltv~e~~~~--------~~~~ 120 (531)
.-||||||||||||+|+|+..+ ..|+|.++|.+... +.+++.+-|+-.++.+=+.+|+.|+-.. ....
T Consensus 33 i~G~NG~GKTtLLRilaGLl~p--~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~ 110 (209)
T COG4133 33 ITGPNGAGKTTLLRILAGLLRP--DAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAAT 110 (209)
T ss_pred EECCCCCcHHHHHHHHHcccCC--CCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchhh
Confidence 3445599999999999997653 46899999887643 2245566788777888899999998221 1345
Q ss_pred HHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 121 IEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 121 ~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
+.++++.+||....|..+ ||||||+|||-++..+++.|||||+++||......+-.++..-+.+|-.||.+||||
T Consensus 111 i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 111 IWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred HHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence 788899999988777766 999999999999999999999999999999999999999998888899999999998
Q ss_pred ch
Q 042733 196 SI 197 (531)
Q Consensus 196 ~~ 197 (531)
..
T Consensus 191 l~ 192 (209)
T COG4133 191 LP 192 (209)
T ss_pred cC
Confidence 63
No 359
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.2e-25 Score=222.67 Aligned_cols=187 Identities=24% Similarity=0.324 Sum_probs=147.1
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFA 92 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~ 92 (531)
...+.++++++.|. +.+++|+++|+.+.+| |+||||++++|-...+. .+|.|.++|.+.. ....|
T Consensus 260 ~g~v~F~~V~F~y~-~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~--~sG~I~id~qdir~vtq~slR 336 (497)
T COG5265 260 LGAVAFINVSFAYD-PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV--NSGSITIDGQDIRDVTQQSLR 336 (497)
T ss_pred cceEEEEEEEeecc-ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC--cCceEEEcchhHHHhHHHHHH
Confidence 34589999999997 5778999999999888 99999999999997663 4799999998764 35678
Q ss_pred ceEEEEecCCCCCCCCcHHhHH---------HH-----HHHHHHHHHHhcCCchhhhccH---------HHHHHHHHHHH
Q 042733 93 RILGYCEQNDIHSPHDTLYDFT---------HC-----LYMFIEEGMELVELNPFRQALF---------EQRKRLTVAVE 149 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~---------~~-----~~~~~~~~l~~l~l~~~~~~~~---------GerqRv~iA~a 149 (531)
+.||.|||+..++ +.|...+. .+ ....+...++.+ .+-.++.+ ||||||+|||+
T Consensus 337 ~aIg~VPQDtvLF-NDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~l--P~gy~t~VgerglklSggekqrvaiar~ 413 (497)
T COG5265 337 RAIGIVPQDTVLF-NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSL--PEGYDTGVGERGLKLSGGEKQRVAIART 413 (497)
T ss_pred HHhCcCcccceeh-hhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhC--chhhhcccchheeeccCchHHHHHHHHH
Confidence 8999999997775 45555441 11 111112222221 11122222 89999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++++|++|+|||.||.||..+.+++...|++.. .|+|.+++.|.++. + --+|.+++|++ |+++..|+-
T Consensus 414 ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i-~~adeiivl~~-g~i~erg~h 481 (497)
T COG5265 414 ILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I-IDADEIIVLDN-GRIVERGTH 481 (497)
T ss_pred HhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c-cCCceEEEeeC-CEEEecCcH
Confidence 999999999999999999999999999999986 58999999999873 3 45799999996 999999974
No 360
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.91 E-value=5.4e-24 Score=229.72 Aligned_cols=179 Identities=23% Similarity=0.290 Sum_probs=138.9
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..|+++|++++|+ .+.+|+++|+.+.+| |||||||||+|+|...+ .+|+|...+. -.+|
T Consensus 2 ~~i~~~~ls~~~g--~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~--~~G~i~~~~~--------~~v~ 69 (530)
T COG0488 2 SMITLENLSLAYG--DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG--------LRVG 69 (530)
T ss_pred ceEEEeeeEEeeC--CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcC--CCCeEeecCC--------ceEE
Confidence 3578999999994 678899888776665 99999999999997643 3577765431 2589
Q ss_pred EEecCCCCCCCCcHHhHH---------------HH--------------------------HHHHHHHHHHhcCCchh--
Q 042733 97 YCEQNDIHSPHDTLYDFT---------------HC--------------------------LYMFIEEGMELVELNPF-- 133 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~---------------~~--------------------------~~~~~~~~l~~l~l~~~-- 133 (531)
|++|+....+..||.+.. .. ...+++.++..+|+.+.
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~ 149 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDR 149 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccC
Confidence 999999999888998750 00 01345566777777654
Q ss_pred --hhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 134 --RQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 134 --~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
.+.+.|||.||++|++|+.+|++|+|||||++||..+...+-+.|++. .| |+|++|||-. -+-+.|++|+-++.
T Consensus 150 ~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~-FLd~V~t~I~~ld~ 225 (530)
T COG0488 150 PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRY-FLDNVATHILELDR 225 (530)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHH-HHHHHhhheEEecC
Confidence 222339999999999999999999999999999999999999999854 46 9999999954 35568999999987
Q ss_pred Ccee-eecCCC
Q 042733 212 VGQE-ISVGPL 221 (531)
Q Consensus 212 ~G~~-v~~G~~ 221 (531)
|++ .|.|.-
T Consensus 226 -g~l~~y~Gny 235 (530)
T COG0488 226 -GKLTPYKGNY 235 (530)
T ss_pred -CceeEecCCH
Confidence 655 455653
No 361
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=2.8e-24 Score=248.62 Aligned_cols=191 Identities=18% Similarity=0.204 Sum_probs=157.8
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
.-.|+++|++.+|..+...+|+|||+.++|| |||||||+++|-....+ .+|+|.++|.++.. .++|
T Consensus 1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~--~~G~I~IDgvdI~~igL~dLR 1213 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP--AEGEILIDGVDISKIGLHDLR 1213 (1381)
T ss_pred CCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc--cCCeEEEcCeecccccHHHHH
Confidence 3479999999999876678999999999999 99999999999998653 46999999998654 5689
Q ss_pred ceEEEEecCCCCCCCCcHHhHH----HHHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFT----HCLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~----~~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~ 152 (531)
++++.+||||.+|. -|+|.|- +..++.+.++++..+|++... -++||||-+++||||++
T Consensus 1214 srlsIIPQdPvLFs-GTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr 1292 (1381)
T KOG0054|consen 1214 SRLSIIPQDPVLFS-GTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR 1292 (1381)
T ss_pred hcCeeeCCCCceec-CccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc
Confidence 99999999998874 6888871 112234555565555544332 22399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+++||+|||.|++.|+.+-..|.+.+|+-- +++|||.+.|..+. + .-+|||++|++ |+++.+|+|.
T Consensus 1293 ~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-V-md~DrVlVld~-G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1293 KSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-V-MDSDRVLVLDA-GRVVEFDSPA 1358 (1381)
T ss_pred cCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-h-hhcCeEEEeeC-CeEeecCChH
Confidence 999999999999999999999999998743 47999999999873 4 45799999996 9999999984
No 362
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.91 E-value=5.9e-24 Score=256.08 Aligned_cols=164 Identities=18% Similarity=0.219 Sum_probs=127.6
Q ss_pred ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHh
Q 042733 42 IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYD 112 (531)
Q Consensus 42 ~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e 112 (531)
+++|+|+|+.+++| ||||||||++|+|..++ .+|+|.++| .++|++|++.+++ .|++|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~--~~G~i~~~g----------~iayv~Q~~~l~~-~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP--SEGKIKHSG----------RISFSPQTSWIMP-GTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECC----------EEEEEeCCCccCC-ccHHH
Confidence 35889999888877 99999999999998653 468888877 4899999998876 49999
Q ss_pred HHHH----HHHHHHHHHHhcCCchh----------------hhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 042733 113 FTHC----LYMFIEEGMELVELNPF----------------RQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAAT 172 (531)
Q Consensus 113 ~~~~----~~~~~~~~l~~l~l~~~----------------~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~ 172 (531)
+... ...+.+++++..++.+. .+.+.|||||++||||++.+|++++|||||+|||+.+++
T Consensus 506 NI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~ 585 (1490)
T TIGR01271 506 NIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEK 585 (1490)
T ss_pred HHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 8210 11122233332222211 122339999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 173 TVIRM-VRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 173 ~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
.+.+. ++++. +|+|+|++||+++. ...||++++|++ |+++..|+.+
T Consensus 586 ~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ii~l~~-g~i~~~g~~~ 632 (1490)
T TIGR01271 586 EIFESCLCKLM-SNKTRILVTSKLEH--LKKADKILLLHE-GVCYFYGTFS 632 (1490)
T ss_pred HHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCEEEEEEC-CEEEEEcCHH
Confidence 99984 66654 48999999999863 456999999985 9999999864
No 363
>PLN03073 ABC transporter F family; Provisional
Probab=99.91 E-value=4.6e-24 Score=239.54 Aligned_cols=190 Identities=15% Similarity=0.102 Sum_probs=133.8
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc-eEEEEEEEcCc-----ccch-
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG-YITRNITVSGY-----PEKQ- 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g-~~~G~i~~~g~-----~~~~- 88 (531)
...|+++|++++|+ ++.+|+|+|+.+.+| |||||||||+|+|....| +..|+|.+.+. ....
T Consensus 175 ~~~I~i~nls~~y~--~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 175 IKDIHMENFSISVG--GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred ceeEEEceEEEEeC--CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 45689999999995 456999999888877 999999999999853111 12355543222 1110
Q ss_pred -----------hhhcceEEEEecCCCCCCC----------------CcHHhH-H-----------HHHHHHHHHHHHhcC
Q 042733 89 -----------ETFARILGYCEQNDIHSPH----------------DTLYDF-T-----------HCLYMFIEEGMELVE 129 (531)
Q Consensus 89 -----------~~~~~~igyv~Q~~~~~~~----------------ltv~e~-~-----------~~~~~~~~~~l~~l~ 129 (531)
...++.+++++|++.+... ..+.+. . .....++.++++.+|
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lg 332 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLS 332 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCC
Confidence 0012335667665322110 000000 0 012345667788888
Q ss_pred Cc-hhhhcc-----HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhcc
Q 042733 130 LN-PFRQAL-----FEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSF 203 (531)
Q Consensus 130 l~-~~~~~~-----~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 203 (531)
+. +..++. .||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++||+.. .+.+.|
T Consensus 333 l~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~-~l~~~~ 408 (718)
T PLN03073 333 FTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHARE-FLNTVV 408 (718)
T ss_pred CChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhC
Confidence 85 333333 39999999999999999999999999999999999999999876 689999999976 466789
Q ss_pred CeEEEEccCceee-ecCCC
Q 042733 204 DELFLLKQVGQEI-SVGPL 221 (531)
Q Consensus 204 d~v~lL~~~G~~v-~~G~~ 221 (531)
|++++|++ |++. |.|+.
T Consensus 409 d~i~~l~~-g~i~~~~g~~ 426 (718)
T PLN03073 409 TDILHLHG-QKLVTYKGDY 426 (718)
T ss_pred CEEEEEEC-CEEEEeCCCH
Confidence 99999996 8986 66764
No 364
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=2.5e-23 Score=183.95 Aligned_cols=167 Identities=20% Similarity=0.191 Sum_probs=136.8
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC-ceEEEEEEEcCcccch-hhhcceEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG-GYITRNITVSGYPEKQ-ETFARILG 96 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~-g~~~G~i~~~g~~~~~-~~~~~~ig 96 (531)
+.++|++...+ ....|-++|+++.+| |||||||+..+.|...+ -..+|++++++...+. ...+|.+|
T Consensus 3 l~l~nvsl~l~--g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G 80 (213)
T COG4136 3 LCLKNVSLRLP--GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG 80 (213)
T ss_pred eeeeeeeecCC--CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhee
Confidence 46777775543 456777777777666 99999999999996543 3578999999987643 23567899
Q ss_pred EEecCCCCCCCCcHHhH----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 97 YCEQNDIHSPHDTLYDF----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
.++|++.++|+++|.++ ...++..++..++..||....+.-. |||-||++-|+|+..|+.++|||
T Consensus 81 iLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDE 160 (213)
T COG4136 81 ILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDE 160 (213)
T ss_pred eeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCC
Confidence 99999999999999998 2355667888999999988766554 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHH-HHHcCCeEEEEecCCc
Q 042733 162 PISGLDARAATTVIRMVRN-TVDMGRTVVCTIHQPS 196 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~-l~~~g~tvi~~~H~~~ 196 (531)
|+|.||..-+.++.+..-. ....|..+|.+|||..
T Consensus 161 PFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 161 PFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 9999999999999987654 4456999999999964
No 365
>PTZ00243 ABC transporter; Provisional
Probab=99.90 E-value=3e-23 Score=250.28 Aligned_cols=165 Identities=21% Similarity=0.179 Sum_probs=124.6
Q ss_pred ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHh
Q 042733 42 IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYD 112 (531)
Q Consensus 42 ~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e 112 (531)
+.+|+|+|+.+.+| ||||||||++|+|..++ .+|++.+ ++.+||++|++.++ ..|++|
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~--~~G~i~~----------~~~i~yv~Q~~~l~-~~Tv~e 739 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI--SEGRVWA----------ERSIAYVPQQAWIM-NATVRG 739 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEE----------CCeEEEEeCCCccC-CCcHHH
Confidence 45888888888777 99999999999997653 3577764 24699999998875 579999
Q ss_pred HHH----HHHHHHHHH---------HHhc--CCchhhh-----ccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 042733 113 FTH----CLYMFIEEG---------MELV--ELNPFRQ-----ALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAAT 172 (531)
Q Consensus 113 ~~~----~~~~~~~~~---------l~~l--~l~~~~~-----~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~ 172 (531)
+.. ...+..++. ++.+ |+....+ .+.|||||++|||||+.+|++++|||||++||+.+++
T Consensus 740 nI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~ 819 (1560)
T PTZ00243 740 NILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGE 819 (1560)
T ss_pred HHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHH
Confidence 821 111122222 3333 3332222 2239999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 173 TVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 173 ~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
.+++.+.....+|+|+|++||+++. ...+|++++|++ |++++.|+.+
T Consensus 820 ~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ii~l~~-G~i~~~G~~~ 866 (1560)
T PTZ00243 820 RVVEECFLGALAGKTRVLATHQVHV--VPRADYVVALGD-GRVEFSGSSA 866 (1560)
T ss_pred HHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEEC-CEEEEecCHH
Confidence 9887543222358999999999863 467999999996 9999999864
No 366
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=1.3e-22 Score=198.52 Aligned_cols=95 Identities=21% Similarity=0.267 Sum_probs=82.5
Q ss_pred HHHHHhcCCch-hhhccH-----HHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEec
Q 042733 122 EEGMELVELNP-FRQALF-----EQRKRLTVAVEFVANP--SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193 (531)
Q Consensus 122 ~~~l~~l~l~~-~~~~~~-----GerqRv~iA~aL~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H 193 (531)
.+.++.+++.+ ..+..+ |||||++||++|+.+| ++++|||||+|||+.++..+.+.|++++++|.|+|++||
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH 197 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 45788888865 345444 9999999999999998 599999999999999999999999999878999999999
Q ss_pred CCchHHHhccCeEEEE------ccCceeeecC
Q 042733 194 QPSIDIFYSFDELFLL------KQVGQEISVG 219 (531)
Q Consensus 194 ~~~~~i~~~~d~v~lL------~~~G~~v~~G 219 (531)
+++ .+ +.||++++| ++ |+++++|
T Consensus 198 ~~~-~~-~~~d~i~~l~~~~~~~~-G~iv~~g 226 (226)
T cd03270 198 DED-TI-RAADHVIDIGPGAGVHG-GEIVAQG 226 (226)
T ss_pred CHH-HH-HhCCEEEEeCCCccccC-CEEEecC
Confidence 986 34 689999999 64 8998876
No 367
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.89 E-value=2e-23 Score=200.01 Aligned_cols=156 Identities=13% Similarity=0.131 Sum_probs=113.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCC-------ceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPG-------GYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYM 119 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~-------g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~ 119 (531)
++.+.+||||||||||+++|+|...+ +...|++.+.|........++.++|++|++..+.. .. ...
T Consensus 23 g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~--~~-----~~~ 95 (197)
T cd03278 23 GLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYS--II-----SQG 95 (197)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCcee--EE-----ehh
Confidence 58899999999999999999986421 11224566666553322335679999998876521 10 123
Q ss_pred HHHHHHHhcCC--chhhhccHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEec
Q 042733 120 FIEEGMELVEL--NPFRQALFEQRKRLTVAVEFV----ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193 (531)
Q Consensus 120 ~~~~~l~~l~l--~~~~~~~~GerqRv~iA~aL~----~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H 193 (531)
+++++++..+. ....+.+.|||||++||++++ .+|++++|||||+|||+..+..+.+.|+++++ +.|||++||
T Consensus 96 ~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH 174 (197)
T cd03278 96 DVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK-ETQFIVITH 174 (197)
T ss_pred hHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEEEEEEC
Confidence 45555555221 112223339999999999997 46799999999999999999999999999865 689999999
Q ss_pred CCchHHHhccCeEEEEccC
Q 042733 194 QPSIDIFYSFDELFLLKQV 212 (531)
Q Consensus 194 ~~~~~i~~~~d~v~lL~~~ 212 (531)
+++ ..+.+|+++.+...
T Consensus 175 ~~~--~~~~~d~v~~~~~~ 191 (197)
T cd03278 175 RKG--TMEAADRLYGVTMQ 191 (197)
T ss_pred CHH--HHhhcceEEEEEec
Confidence 986 34689999998753
No 368
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=1.7e-22 Score=200.71 Aligned_cols=125 Identities=19% Similarity=0.171 Sum_probs=99.9
Q ss_pred EEEEecCCCCCCCCcHHhHHHH-----HHHHHHHHHHhcCCch-hhhccH-----HHHHHHHHHHHHhhC---CCeEEEe
Q 042733 95 LGYCEQNDIHSPHDTLYDFTHC-----LYMFIEEGMELVELNP-FRQALF-----EQRKRLTVAVEFVAN---PSIISRD 160 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~~-----~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~iA~aL~~~---p~lllLD 160 (531)
+.|..++......+|+.|+... ......+.++.+||.. ..++.. |||||++||++|+.+ |++++||
T Consensus 118 ~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLD 197 (261)
T cd03271 118 VRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILD 197 (261)
T ss_pred cCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 3455555555577888887321 1234667888999976 344443 999999999999996 7999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc-----cCceeeecCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK-----QVGQEISVGPL 221 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~-----~~G~~v~~G~~ 221 (531)
|||+|||+..+..+.+.|++++++|.|||+++|+++. .+.+|+++.|. ++|++++.|++
T Consensus 198 EPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~--i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 198 EPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDV--IKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH--HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 9999999999999999999998889999999999863 45799999993 35999999874
No 369
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.89 E-value=2.9e-22 Score=231.94 Aligned_cols=183 Identities=20% Similarity=0.318 Sum_probs=150.0
Q ss_pred ceEEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcce
Q 042733 25 PHYISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARI 94 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ 94 (531)
...++++|.+++.+.. ..+.|+|||+.+++| |||||+||.+|.|..+ ..+|++.++|.
T Consensus 516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs---------- 583 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS---------- 583 (1381)
T ss_pred CceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe----------
Confidence 4568999999998752 335999999999999 9999999999999765 36788988874
Q ss_pred EEEEecCCCCCCCCcHHhH----HHHHHHHHHHHHHhcCCchhhhccH----------------HHHHHHHHHHHHhhCC
Q 042733 95 LGYCEQNDIHSPHDTLYDF----THCLYMFIEEGMELVELNPFRQALF----------------EQRKRLTVAVEFVANP 154 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~----~~~~~~~~~~~l~~l~l~~~~~~~~----------------GerqRv~iA~aL~~~p 154 (531)
++||+|++.++ +-||+|| ..-.+++.+++++...|++-.+... |||||+++|||+.+++
T Consensus 584 iaYv~Q~pWI~-ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~a 662 (1381)
T KOG0054|consen 584 VAYVPQQPWIQ-NGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDA 662 (1381)
T ss_pred EEEeccccHhh-CCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccC
Confidence 89999999875 5899998 2334456677777766654333322 8999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
++.+||.|.|.+|.+..+.+.+..-.-.-+++|+|++|||.. ....+|.|++|++ |++...|+.++
T Consensus 663 dIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~--~L~~ad~Iivl~~-G~I~~~Gty~e 728 (1381)
T KOG0054|consen 663 DIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ--FLPHADQIIVLKD-GKIVESGTYEE 728 (1381)
T ss_pred CEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh--hhhhCCEEEEecC-CeEecccCHHH
Confidence 999999999999999999998855443345899999999864 5778999999996 99999999753
No 370
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.88 E-value=8.2e-22 Score=191.23 Aligned_cols=178 Identities=18% Similarity=0.084 Sum_probs=115.6
Q ss_pred EEEEEeEEEEEeCCCcccc-----ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCc--ccchhhhcceEEEEe
Q 042733 27 YISLNEIVYSVDMPQIGDL-----NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGY--PEKQETFARILGYCE 99 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL-----~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~--~~~~~~~~~~igyv~ 99 (531)
.|+++|+. +|.......+ +++...+||||||||||+++|++...+ ...+....+.. .......+..+++++
T Consensus 5 ~i~l~nf~-~y~~~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~v~~~f 82 (213)
T cd03279 5 KLELKNFG-PFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG-KTPRYGRQENLRSVFAPGEDTAEVSFTF 82 (213)
T ss_pred EEEEECCc-CcCCceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec-CccccccchhHHHHhcCCCccEEEEEEE
Confidence 45666665 4432211112 348999999999999999999963211 11111121100 011122345688888
Q ss_pred cCCCC------CCCCcHHhHHHHHHHHHHHHHHhcCCchhhhcc-----HHHHHHHHHHHHHhh----------CCCeEE
Q 042733 100 QNDIH------SPHDTLYDFTHCLYMFIEEGMELVELNPFRQAL-----FEQRKRLTVAVEFVA----------NPSIIS 158 (531)
Q Consensus 100 Q~~~~------~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~-----~GerqRv~iA~aL~~----------~p~lll 158 (531)
|++.. .+.++..+.... + .++..++.+..+.. .|||||+++|++++. +|++++
T Consensus 83 ~~~~~~~~~~r~~gl~~~~~~~~----~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~ll 156 (213)
T cd03279 83 QLGGKKYRVERSRGLDYDQFTRI----V--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALF 156 (213)
T ss_pred EECCeEEEEEEecCCCHHHHHHh----h--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEE
Confidence 87643 122222221110 0 12333333433333 399999999999985 578999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCc
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVG 213 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G 213 (531)
|||||+|||+.++..+.+.|++++++|.|+|++||+++ .+...+|++++++++|
T Consensus 157 lDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 157 IDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 99999999999999999999999877999999999986 4667789999998643
No 371
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.88 E-value=4.8e-22 Score=196.54 Aligned_cols=161 Identities=18% Similarity=0.199 Sum_probs=107.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCC----------------CCc----eEEE--EEEEcCcc----c--chhhhcceEEEE
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRK----------------PGG----YITR--NITVSGYP----E--KQETFARILGYC 98 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~----------------~~g----~~~G--~i~~~g~~----~--~~~~~~~~igyv 98 (531)
++++.+||||||||||+++|++.. ..+ ...+ ++.+++.+ . .+...++.++++
T Consensus 24 ~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~ 103 (243)
T cd03272 24 KHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLK 103 (243)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEECC
Confidence 588999999999999999998321 111 0112 34444421 1 112346678999
Q ss_pred ecCCCCCC-CCcHHhHHHHHHHH------------HHHHHHhcCCchhh-----hccHHHHHHHHHHHHHhh----CCCe
Q 042733 99 EQNDIHSP-HDTLYDFTHCLYMF------------IEEGMELVELNPFR-----QALFEQRKRLTVAVEFVA----NPSI 156 (531)
Q Consensus 99 ~Q~~~~~~-~ltv~e~~~~~~~~------------~~~~l~~l~l~~~~-----~~~~GerqRv~iA~aL~~----~p~l 156 (531)
+|+..+++ ..|..|........ ..+..+.+++.+.. ..+.|||||++||++|+. +|++
T Consensus 104 ~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~i 183 (243)
T cd03272 104 KDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPF 183 (243)
T ss_pred CCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCE
Confidence 88876665 34554432111100 00111112222212 223399999999999974 5899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
+++||||+|||+.+++.+++.|+++++ ++++|+++|++ ++.+.||++++|.
T Consensus 184 lllDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 184 YLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 999999999999999999999999865 78889889985 4678999999986
No 372
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.8e-22 Score=182.04 Aligned_cols=180 Identities=21% Similarity=0.258 Sum_probs=129.5
Q ss_pred EEEEeEEEEEeCCC-----ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcc--c-----
Q 042733 28 ISLNEIVYSVDMPQ-----IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYP--E----- 86 (531)
Q Consensus 28 l~~~~ls~~~~~~~-----~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~--~----- 86 (531)
+.++|+++++.... -++++++|+.+..| |||||||||+|-|.... .+|+|.+.-.. .
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~--d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP--DEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCC--CCceEEEEeCcchhhhhcc
Confidence 45555555543211 15667777776655 99999999999995321 34666654221 1
Q ss_pred ch----hhhcceEEEEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhcc------HHHHHHHH
Q 042733 87 KQ----ETFARILGYCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQAL------FEQRKRLT 145 (531)
Q Consensus 87 ~~----~~~~~~igyv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~------~GerqRv~ 145 (531)
.. .-.++.+|||.|--...|.....+. .+..+.+...++..+++.+..=.. .||||||.
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVN 162 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVN 162 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehh
Confidence 11 1235679999997666666554443 234456677888888886533222 29999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHh-ccCeEEEEcc
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFY-SFDELFLLKQ 211 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~-~~d~v~lL~~ 211 (531)
|||.++.+-+||+|||||+.||...+..+++++++-+.+|..+|=+-||- ++.+ .+||++-+..
T Consensus 163 IaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDe--evre~vadR~~~~~~ 227 (235)
T COG4778 163 IARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDE--EVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccH--HHHHHHhhheeeccc
Confidence 99999999999999999999999999999999999888899999999984 3443 6899887753
No 373
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.87 E-value=2.2e-21 Score=205.04 Aligned_cols=189 Identities=16% Similarity=0.292 Sum_probs=152.2
Q ss_pred cceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hh
Q 042733 24 EPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ET 90 (531)
Q Consensus 24 ~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~ 90 (531)
.++.+++++++.. ..++|+||.+.+| |||+|-|+++|.|..+. ..|+|.++|.+... ..
T Consensus 260 ~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~--~~G~i~l~G~~v~~~sp~~A 331 (500)
T COG1129 260 GEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA--SSGEILLDGKPVRIRSPRDA 331 (500)
T ss_pred CCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC--CCceEEECCEEccCCCHHHH
Confidence 3566888888732 2468999999999 99999999999996542 47999999987532 34
Q ss_pred hcceEEEEecC---CCCCCCCcHHhHH----------------HHHHHHHHHHHHhcCCchh------hhccHHHHHHHH
Q 042733 91 FARILGYCEQN---DIHSPHDTLYDFT----------------HCLYMFIEEGMELVELNPF------RQALFEQRKRLT 145 (531)
Q Consensus 91 ~~~~igyv~Q~---~~~~~~ltv~e~~----------------~~~~~~~~~~l~~l~l~~~------~~~~~GerqRv~ 145 (531)
.+..++|||+| +.++..+++.+|. ...+..+++..+.+++... ...+.|.||||.
T Consensus 332 i~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVv 411 (500)
T COG1129 332 IKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVV 411 (500)
T ss_pred HHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHH
Confidence 56789999987 4577888888871 1123345666777776432 222339999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||.|..+|++|||||||.|.|.-++.+|.+++++++++|++||++|.+.. |+..+||||++|++ |+++..=+.+
T Consensus 412 larwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e~~~~ 486 (500)
T COG1129 412 LARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVGELDRE 486 (500)
T ss_pred HHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEEeccc
Confidence 999999999999999999999999999999999999999999999999986 78999999999996 9998754443
No 374
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.87 E-value=5.6e-22 Score=178.32 Aligned_cols=125 Identities=26% Similarity=0.386 Sum_probs=103.7
Q ss_pred EEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceEEEEecCCCCCC
Q 042733 30 LNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARILGYCEQNDIHSP 106 (531)
Q Consensus 30 ~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~igyv~Q~~~~~~ 106 (531)
++|+++.+.. .++.+.+|+||||||||+++|+|..++ .+|.|.++|.+... ...++.++|++|++.+++
T Consensus 1 L~~v~~~i~~------g~~~~i~G~nGsGKStLl~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 72 (137)
T PF00005_consen 1 LKNVSLEIKP------GEIVAIVGPNGSGKSTLLKALAGLLPP--DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFP 72 (137)
T ss_dssp EEEEEEEEET------TSEEEEEESTTSSHHHHHHHHTTSSHE--SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHT
T ss_pred CCceEEEEcC------CCEEEEEccCCCccccceeeecccccc--ccccccccccccccccccccccccccccccccccc
Confidence 4688888763 357889999999999999999998653 57999999987654 446778999999999999
Q ss_pred CCcHHhHHHHHHHHHHHHHHhcCCchhhhccH---------HHHHHHHHHHHHhhCCCeEEEeCCCC
Q 042733 107 HDTLYDFTHCLYMFIEEGMELVELNPFRQALF---------EQRKRLTVAVEFVANPSIISRDEPIS 164 (531)
Q Consensus 107 ~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~---------GerqRv~iA~aL~~~p~lllLDEPts 164 (531)
.+|++++ .....++++++.+++.+..++.+ |||||++||++|+.+|++++|||||+
T Consensus 73 ~~tv~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 73 GLTVREN--ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp TSBHHHH--HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccc--cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9999987 33455788888888766544443 99999999999999999999999996
No 375
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.87 E-value=6.9e-22 Score=196.52 Aligned_cols=161 Identities=14% Similarity=0.132 Sum_probs=118.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCc-cc-c----hhhhcceEEEEecCC---------CCCCCCcH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGY-PE-K----QETFARILGYCEQND---------IHSPHDTL 110 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~-~~-~----~~~~~~~igyv~Q~~---------~~~~~ltv 110 (531)
.++++.+||||||||||+++|++...+. ..|.+...+. +. . ....+..+++++|++ ...|.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~-~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT-NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc-ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 5899999999999999999999964321 1234555443 11 0 011234789999984 23445666
Q ss_pred HhH-------------HHHHHHHHHHHHHhcCCc--------------------hhhhc-----cHHHHHHHHHHHHHh-
Q 042733 111 YDF-------------THCLYMFIEEGMELVELN--------------------PFRQA-----LFEQRKRLTVAVEFV- 151 (531)
Q Consensus 111 ~e~-------------~~~~~~~~~~~l~~l~l~--------------------~~~~~-----~~GerqRv~iA~aL~- 151 (531)
.++ .......+.+.++.+++. +..+. ..|||||++||++|+
T Consensus 104 ~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 104 TRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHH
Confidence 542 111235677888888875 22222 239999999999998
Q ss_pred ---hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 152 ---ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 152 ---~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
.+|+++++||||+|||+..+..+.+.|++++ +|.|+|++||++ ++.+.+|+++-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 5789999999999999999999999999985 488999999994 5778899998775
No 376
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.87 E-value=6.9e-23 Score=185.49 Aligned_cols=171 Identities=20% Similarity=0.322 Sum_probs=142.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceEEEEecCCCCCCCCcHHhH------HHHHH
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARILGYCEQNDIHSPHDTLYDF------THCLY 118 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~igyv~Q~~~~~~~ltv~e~------~~~~~ 118 (531)
+--.+|||||||||||-.++|..+. +|+|.+.|.+... .+..|.-+|..|+......+.|..+ ..+..
T Consensus 27 ~~HliGPNGaGKSTLLA~lAGm~~~---sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a 103 (248)
T COG4138 27 ILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRT 103 (248)
T ss_pred EEEEECCCCccHHHHHHHHhCCCCC---CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHH
Confidence 4456899999999999999999874 6999999998643 3455566899988766666667665 34555
Q ss_pred HHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhh-----C--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 042733 119 MFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVA-----N--PSIISRDEPISGLDARAATTVIRMVRNTVDMGR 186 (531)
Q Consensus 119 ~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~-----~--p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~ 186 (531)
..++++.+.+++++...+.+ ||-|||-+|...++ | .++|+||||.++||...+..+-.+|.+++.+|.
T Consensus 104 ~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~ 183 (248)
T COG4138 104 ELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGL 183 (248)
T ss_pred HHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCc
Confidence 66788888999988777666 89999999987764 3 369999999999999999999999999999999
Q ss_pred eEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 187 TVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 187 tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
+||++.||.+. ..+.+|++.+|++ |++...|..++
T Consensus 184 ~vims~HDLNh-TLrhA~~~wLL~r-G~l~~~G~~~e 218 (248)
T COG4138 184 AIVMSSHDLNH-TLRHAHRAWLLKR-GKLLASGRREE 218 (248)
T ss_pred EEEEeccchhh-HHHHHHHHHHHhc-CeEEeecchhh
Confidence 99999999985 5677899999997 99999998754
No 377
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.86 E-value=1.1e-21 Score=188.97 Aligned_cols=161 Identities=16% Similarity=0.212 Sum_probs=111.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHh----CCCCCceEEEEEEEcCcccchhhhcceEEEEecCCC-----CCCCCcHHhHHH-
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLA----GRKPGGYITRNITVSGYPEKQETFARILGYCEQNDI-----HSPHDTLYDFTH- 115 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~----G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~-----~~~~ltv~e~~~- 115 (531)
.++.+.+||||||||||+++|. |....+ .|.+..+.........+..+++++|++. ....+|+.++..
T Consensus 22 ~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~--~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~ 99 (204)
T cd03240 22 SPLTLIVGQNGAGKTTIIEALKYALTGELPPN--SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIF 99 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcCCCCcc--cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceee
Confidence 3589999999999999999995 765432 2322211111112233457899999872 223335555411
Q ss_pred HHHHHHHHHHHhcCCchhhhccHHHHHH------HHHHHHHhhCCCeEEEeCCCCCCCHHHHH-HHHHHHHHHHHc-CCe
Q 042733 116 CLYMFIEEGMELVELNPFRQALFEQRKR------LTVAVEFVANPSIISRDEPISGLDARAAT-TVIRMVRNTVDM-GRT 187 (531)
Q Consensus 116 ~~~~~~~~~l~~l~l~~~~~~~~GerqR------v~iA~aL~~~p~lllLDEPtsgLD~~~~~-~i~~~L~~l~~~-g~t 187 (531)
.....+++.+ -.+..+.+.||||| +++|++++.+|+++++||||++||+..+. .+.+.|++++++ |.|
T Consensus 100 ~~~~~~~~~~----~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~ 175 (204)
T cd03240 100 CHQGESNWPL----LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQ 175 (204)
T ss_pred echHHHHHHH----hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCE
Confidence 0111122222 11223344499996 78999999999999999999999999999 999999999876 889
Q ss_pred EEEEecCCchHHHhccCeEEEEccCce
Q 042733 188 VVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 188 vi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
||++||++. ....+|+++.|.++|+
T Consensus 176 iiiitH~~~--~~~~~d~i~~l~~~~~ 200 (204)
T cd03240 176 LIVITHDEE--LVDAADHIYRVEKDGR 200 (204)
T ss_pred EEEEEecHH--HHhhCCEEEEEeeCCC
Confidence 999999975 4567999999977664
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.86 E-value=1.7e-22 Score=195.70 Aligned_cols=166 Identities=16% Similarity=0.156 Sum_probs=116.8
Q ss_pred EEEEEeEEEEEeCCCccccc----cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCC
Q 042733 27 YISLNEIVYSVDMPQIGDLN----SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQND 102 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~----~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~ 102 (531)
.|+++|.. +|. +..+++ ++.+.+||||||||||+++|.- +.|.+.. ...++.+++++|+.
T Consensus 5 ~l~l~nfk-~~~--~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~~------------~~G~~~~-~~~~~~i~~~~~~~ 68 (212)
T cd03274 5 KLVLENFK-SYA--GEQVIGPFHKSFSAIVGPNGSGKSNVIDSMLF------------VFGFRAS-KMRQKKLSDLIHNS 68 (212)
T ss_pred EEEEECcc-cCC--CCeeeccCCCCeEEEECCCCCCHHHHHHHHHH------------HhccCHH-HhhhhhHHHHhcCC
Confidence 45666664 443 334544 5789999999999999999972 1222111 11123467777776
Q ss_pred CCCCCCcHHhH----HH-----H--------HHHH----HHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhh----
Q 042733 103 IHSPHDTLYDF----TH-----C--------LYMF----IEEGMELVELNPFRQALF-----EQRKRLTVAVEFVA---- 152 (531)
Q Consensus 103 ~~~~~ltv~e~----~~-----~--------~~~~----~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~---- 152 (531)
..++.+|+.+. .. . .... .+++++.+++.+..++.+ |||||++||++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~ 148 (212)
T cd03274 69 AGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYK 148 (212)
T ss_pred CCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccC
Confidence 66666666554 00 0 0000 134445666665555544 99999999999974
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
+|++++|||||+|||+.++..+.+.+++++ ++.|+|++||++ ++.+.||++++|..
T Consensus 149 ~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 149 PTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 579999999999999999999999999985 467888888985 57789999999975
No 379
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.86 E-value=1e-20 Score=204.42 Aligned_cols=181 Identities=19% Similarity=0.190 Sum_probs=139.7
Q ss_pred cceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcce
Q 042733 24 EPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARI 94 (531)
Q Consensus 24 ~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ 94 (531)
....++++|+++.|+.+ +.+++++|+.+.+| |+|||||||+|+|...+ .+|.|.+... -.
T Consensus 318 g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~--~~G~v~~g~~--------v~ 386 (530)
T COG0488 318 GKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP--LSGTVKVGET--------VK 386 (530)
T ss_pred CCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc--CCceEEeCCc--------eE
Confidence 35679999999999633 67999999877555 99999999999996543 2677765321 35
Q ss_pred EEEEecCCC-CCCCCcHHhHHHHH-----HHHHHHHHHhcCCchhh-hc-----cHHHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 95 LGYCEQNDI-HSPHDTLYDFTHCL-----YMFIEEGMELVELNPFR-QA-----LFEQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 95 igyv~Q~~~-~~~~ltv~e~~~~~-----~~~~~~~l~~l~l~~~~-~~-----~~GerqRv~iA~aL~~~p~lllLDEP 162 (531)
+||..|+.. +.+..|+.+..... ...+...+..+++..-. .+ +.|||.|+.+|+.++.+|.+|+||||
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEP 466 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEP 466 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCC
Confidence 899999863 34777888873221 45677888888886432 22 33999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 163 ISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
|++||..+...+.+.|.+. .-|||++|||.. -+-..+++++.+.+ +-..+.|.
T Consensus 467 TNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i~~~~~-~~~~~~g~ 519 (530)
T COG0488 467 TNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRIWLVED-KVEEFEGG 519 (530)
T ss_pred CccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceEEEEcC-ceeEcCCC
Confidence 9999999999999998875 458999999976 36678999999974 33334454
No 380
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.82 E-value=8.4e-20 Score=196.58 Aligned_cols=172 Identities=24% Similarity=0.303 Sum_probs=135.6
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceE
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARIL 95 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~i 95 (531)
...++++|++..-+.+ ...+++.++.++|| |||||||+|+|+|..+-| +|+|... -...+
T Consensus 390 ~~~i~~~nl~l~~p~~-~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g--~G~I~~P--------~~~~~ 458 (604)
T COG4178 390 DHGITLENLSLRTPDG-QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG--SGRISMP--------ADSAL 458 (604)
T ss_pred cceeEEeeeeEECCCC-CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC--CCceecC--------CCCce
Confidence 4689999999888743 47999999999999 999999999999998754 3555442 11246
Q ss_pred EEEecCCCCCCCCcHHhH-------HHHHHHHHHHHHHhcCCchhhhccH-----------HHHHHHHHHHHHhhCCCeE
Q 042733 96 GYCEQNDIHSPHDTLYDF-------THCLYMFIEEGMELVELNPFRQALF-----------EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~-------~~~~~~~~~~~l~~l~l~~~~~~~~-----------GerqRv~iA~aL~~~p~ll 157 (531)
-|+||.+.+.. -|.+|. .....+.+.++|.++||.+..++.- |||||+++||.|+++|+++
T Consensus 459 lflpQ~PY~p~-GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v 537 (604)
T COG4178 459 LFLPQRPYLPQ-GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWV 537 (604)
T ss_pred EEecCCCCCCC-ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEE
Confidence 79999887644 488886 1123455778889999988766542 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
+|||.|++||+.++..+.+.+++-. .+.|||-+.|++.. ....++.+-+.+
T Consensus 538 ~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~tl--~~~h~~~l~l~~ 588 (604)
T COG4178 538 FLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPTL--WNFHSRQLELLD 588 (604)
T ss_pred EEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchhh--HHHHhhheeecc
Confidence 9999999999999999999998732 37999999999764 445556555543
No 381
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.81 E-value=1.1e-19 Score=180.31 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCc
Q 042733 139 EQRKRLTVAVEFVAN----PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVG 213 (531)
Q Consensus 139 GerqRv~iA~aL~~~----p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G 213 (531)
|||||++||++++.+ |++++|||||+|||+..+..+.+.|++++++|.+||++||++ ++.+.+|+++++.+++
T Consensus 159 G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~~~ 235 (247)
T cd03275 159 GEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYRDQ 235 (247)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEecC
Confidence 999999999999875 899999999999999999999999999987799999999995 4678899999998644
No 382
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.80 E-value=3e-19 Score=171.25 Aligned_cols=154 Identities=12% Similarity=0.028 Sum_probs=104.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCc---eEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGG---YITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEE 123 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g---~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~ 123 (531)
++++.+||||||||||+.+|.....+. ...|. .+... .........+.+.+|+....++ +........+++
T Consensus 22 gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~-~~~~~-i~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~ 95 (198)
T cd03276 22 RVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGS-SLKDL-IKDGESSAKITVTLKNQGLDAN----PLCVLSQDMARS 95 (198)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCcccccccc-cHHHH-hhCCCCeEEEEEEEEcCCccCC----cCCHHHHHHHHH
Confidence 688999999999999999997422110 00111 00000 0001113457788887655441 111112344566
Q ss_pred HHHhcCCchhhhcc-----HHHHHHHHHHHHH----hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc---CCeEEEE
Q 042733 124 GMELVELNPFRQAL-----FEQRKRLTVAVEF----VANPSIISRDEPISGLDARAATTVIRMVRNTVDM---GRTVVCT 191 (531)
Q Consensus 124 ~l~~l~l~~~~~~~-----~GerqRv~iA~aL----~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~---g~tvi~~ 191 (531)
.++. .+..++. .|||||++||+++ +.+|++++|||||+|||+..+..+.+.|++++++ +.|||++
T Consensus 96 ~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~ 172 (198)
T cd03276 96 FLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFIT 172 (198)
T ss_pred Hhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 6665 3333333 3999999999999 5899999999999999999999999999998653 3589999
Q ss_pred ecCCchHHHhccCeEEEEcc
Q 042733 192 IHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 192 ~H~~~~~i~~~~d~v~lL~~ 211 (531)
+|+++ ++. .+|+|.++..
T Consensus 173 th~~~-~i~-~~d~v~~~~~ 190 (198)
T cd03276 173 PQDIS-GLA-SSDDVKVFRM 190 (198)
T ss_pred CCccc-ccc-cccceeEEEe
Confidence 99987 344 4599999975
No 383
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.2e-19 Score=182.67 Aligned_cols=188 Identities=17% Similarity=0.196 Sum_probs=141.0
Q ss_pred eEEEEEeEEEEEeCCCccccccEE---------EEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLS---------GAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs---------~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..++++|+.|.|.... --++.|| +.+|.||||||||++.|+|+..+ .+|+|.+||.|++. +++|+
T Consensus 321 ~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~P--qsG~I~ldg~pV~~e~ledYR~ 397 (546)
T COG4615 321 KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP--QSGEILLDGKPVSAEQLEDYRK 397 (546)
T ss_pred cceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCC--CCCceeECCccCCCCCHHHHHH
Confidence 4799999999997432 3344444 55555599999999999997653 47999999998753 45777
Q ss_pred eEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchh---hhcc-------HHHHHHHHHHHHHhhCCCeEEEeCCC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPF---RQAL-------FEQRKRLTVAVEFVANPSIISRDEPI 163 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~---~~~~-------~GerqRv~iA~aL~~~p~lllLDEPt 163 (531)
.++-|+-|..+++.+--.|.. ...+.++..++.+++.+. .|.. -|||||+++-.|++-+.+|+++||=-
T Consensus 398 LfSavFsDyhLF~~ll~~e~~-as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWA 476 (546)
T COG4615 398 LFSAVFSDYHLFDQLLGPEGK-ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWA 476 (546)
T ss_pred HHHHHhhhHhhhHhhhCCccC-CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhh
Confidence 777777766666543333321 123446666666666542 2222 29999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH-HHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 164 SGLDARAATTVIRMVR-NTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 164 sgLD~~~~~~i~~~L~-~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
+--||.-++.+.+.+- .++++|+||+.+|||-. -+..+||++.+.+ |+++..-+
T Consensus 477 ADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~~~~-G~~~e~tg 531 (546)
T COG4615 477 ADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLEMRN-GQLSELTG 531 (546)
T ss_pred ccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHHHhc-Cceeeccc
Confidence 9999999999998765 45667999999999943 5778899999986 99987543
No 384
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.78 E-value=6.7e-18 Score=175.46 Aligned_cols=194 Identities=16% Similarity=0.246 Sum_probs=161.3
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCccc----chh-h
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPE----KQE-T 90 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~----~~~-~ 90 (531)
...++++||+..-.. ....+++||+.+..| |-|-+.|+.+|+|..+. .+|+|.++|.+. ... .
T Consensus 255 ~~vL~V~~L~v~~~~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~ 331 (501)
T COG3845 255 EVVLEVEDLSVKDRR-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKDVLGRLSPRER 331 (501)
T ss_pred CeEEEEeeeEeecCC-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEeccccCCHHHH
Confidence 567999999976542 246899999999999 99999999999997643 248999999875 222 2
Q ss_pred hcceEEEEecCC---CCCCCCcHHhH------------------HHHHHHHHHHHHHhcCCchh------hhccHHHHHH
Q 042733 91 FARILGYCEQND---IHSPHDTLYDF------------------THCLYMFIEEGMELVELNPF------RQALFEQRKR 143 (531)
Q Consensus 91 ~~~~igyv~Q~~---~~~~~ltv~e~------------------~~~~~~~~~~~l~~l~l~~~------~~~~~GerqR 143 (531)
.+..++|||+|. .+.+.+|+.|| .........++++.++.... +..+.|.+||
T Consensus 332 r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK 411 (501)
T COG3845 332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQK 411 (501)
T ss_pred HhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceeh
Confidence 345799999985 45688899988 13345567788888887632 2223399999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 144 v~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
+-+||+|..+|++|+..+||.|||..+.+.+.+.|.+.+++|+.|++++-+++ |+++++||+.+|.+ |+++...++++
T Consensus 412 ~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~~ 489 (501)
T COG3845 412 LILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPEE 489 (501)
T ss_pred hhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceeccccccc
Confidence 99999999999999999999999999999999999999999999999999998 79999999999996 99998888764
No 385
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.77 E-value=9.2e-18 Score=199.65 Aligned_cols=98 Identities=20% Similarity=0.264 Sum_probs=86.1
Q ss_pred HHHHhcCCchh-hhccH-----HHHHHHHHHHHHh---hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEec
Q 042733 123 EGMELVELNPF-RQALF-----EQRKRLTVAVEFV---ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193 (531)
Q Consensus 123 ~~l~~l~l~~~-~~~~~-----GerqRv~iA~aL~---~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H 193 (531)
+.++.+|+.+. .++.+ |||||++||++|+ .+|++++|||||+|||+.++.++++.|++++++|.|||+++|
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsH 870 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 47788898765 45544 9999999999998 699999999999999999999999999999888999999999
Q ss_pred CCchHHHhccCeEEEEc-----cCceeeecCCCC
Q 042733 194 QPSIDIFYSFDELFLLK-----QVGQEISVGPLG 222 (531)
Q Consensus 194 ~~~~~i~~~~d~v~lL~-----~~G~~v~~G~~~ 222 (531)
+++ .+ ..+|+++.|. .+|+++..|+++
T Consensus 871 dl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 871 NMH-VV-KVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred CHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 987 34 7899999995 248999999875
No 386
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.76 E-value=9.1e-19 Score=182.76 Aligned_cols=182 Identities=18% Similarity=0.175 Sum_probs=129.3
Q ss_pred cceEEEEEeEEEEEeCCCccccccEEE---------EEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcce
Q 042733 24 EPHYISLNEIVYSVDMPQIGDLNSLSG---------AFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARI 94 (531)
Q Consensus 24 ~~~~l~~~~ls~~~~~~~~~iL~~vs~---------~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ 94 (531)
.+..+.++|++|.|+.+. .+++++++ .+||||+|||||||++.|...+ ..|.+.-.-. .+
T Consensus 386 p~pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H--------~~ 454 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSH--------NK 454 (614)
T ss_pred CCCeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--cccccccccc--------cc
Confidence 356899999999997432 56777665 4889999999999999997543 2454432211 11
Q ss_pred EEEEecC--CCCCCCCcHHhH-----H-HHHHHHHHHHHHhcCCchhhhc------cHHHHHHHHHHHHHhhCCCeEEEe
Q 042733 95 LGYCEQN--DIHSPHDTLYDF-----T-HCLYMFIEEGMELVELNPFRQA------LFEQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 95 igyv~Q~--~~~~~~ltv~e~-----~-~~~~~~~~~~l~~l~l~~~~~~------~~GerqRv~iA~aL~~~p~lllLD 160 (531)
+++..|+ +.+.-..++.|+ . ....+.+..++..+||+...+. +.|||+||.+|+.++..|.+|+||
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLD 534 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLD 534 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEec
Confidence 2233332 112223344443 1 1334557778999999844333 239999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
|||+|||..+...+.+.|.+. .-+||++|||... |.+.++++.+..+++...+.|.
T Consensus 535 EPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 535 EPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred CCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecCcc
Confidence 999999999999988888764 4579999999763 6677888888876555666665
No 387
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.76 E-value=1.9e-18 Score=160.91 Aligned_cols=174 Identities=14% Similarity=0.214 Sum_probs=129.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCc-eEE-EEEEEcCccc---chhh----hcceEEEEecCCC--CCCCCcHHhH--
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGG-YIT-RNITVSGYPE---KQET----FARILGYCEQNDI--HSPHDTLYDF-- 113 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g-~~~-G~i~~~g~~~---~~~~----~~~~igyv~Q~~~--~~~~ltv~e~-- 113 (531)
.+.|.+|.+|||||-..|+|+|..+.. .+. ....+++.+. .... ..+.+++++|++. +-|..++...
T Consensus 34 Ei~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlI 113 (330)
T COG4170 34 EIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLI 113 (330)
T ss_pred eeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHH
Confidence 466777777999999999999965432 111 1223333321 1222 2345778999874 3444444321
Q ss_pred ---------------HHHHHHHHHHHHHhcCCchhhhccH--------HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 042733 114 ---------------THCLYMFIEEGMELVELNPFRQALF--------EQRKRLTVAVEFVANPSIISRDEPISGLDARA 170 (531)
Q Consensus 114 ---------------~~~~~~~~~~~l~~l~l~~~~~~~~--------GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~ 170 (531)
-.-++.+.-+++..+|+.+..|-.- ||-|+|.||.|++..|++|+.||||+.+||.+
T Consensus 114 q~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~T 193 (330)
T COG4170 114 QNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTT 193 (330)
T ss_pred hhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccH
Confidence 1123456677888999987666543 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 171 ATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 171 ~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+.++.++|.++.+ +|.||++++||.. .+.+.||++-+|.- |+-+..++.+
T Consensus 194 q~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYC-GQ~~ESa~~e 244 (330)
T COG4170 194 QAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYC-GQTVESAPSE 244 (330)
T ss_pred HHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEe-cccccccchh
Confidence 9999999999986 5899999999987 58889999999986 8888877753
No 388
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.75 E-value=1.9e-17 Score=189.46 Aligned_cols=100 Identities=21% Similarity=0.229 Sum_probs=85.6
Q ss_pred HHHHHHhcCCch-hhhcc-----HHHHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEE
Q 042733 121 IEEGMELVELNP-FRQAL-----FEQRKRLTVAVEFVANP---SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCT 191 (531)
Q Consensus 121 ~~~~l~~l~l~~-~~~~~-----~GerqRv~iA~aL~~~p---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~ 191 (531)
..+.++.+||.. ..++. .|||||+.||++|+.+| ++++|||||+|||+..+..+++.|+++.++|.|||++
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIii 889 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVI 889 (943)
T ss_pred HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 356678888875 23433 39999999999999999 9999999999999999999999999998889999999
Q ss_pred ecCCchHHHhccCeEEEEc-----cCceeeecCCCC
Q 042733 192 IHQPSIDIFYSFDELFLLK-----QVGQEISVGPLG 222 (531)
Q Consensus 192 ~H~~~~~i~~~~d~v~lL~-----~~G~~v~~G~~~ 222 (531)
+|+++. ...+|+++.|. ++|++++.|+++
T Consensus 890 tH~~~~--i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~ 923 (943)
T PRK00349 890 EHNLDV--IKTADWIIDLGPEGGDGGGEIVATGTPE 923 (943)
T ss_pred ecCHHH--HHhCCEEEEecCCcCCCCCEEEEeCCHH
Confidence 999863 46799999993 359999999863
No 389
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.75 E-value=1e-17 Score=155.78 Aligned_cols=191 Identities=17% Similarity=0.217 Sum_probs=133.7
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------- 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------- 88 (531)
...|+++++.|.|+..+ +++-|+|+.+..| |||||||||+|+|..--+ .|.|.++|.+.-.
T Consensus 11 ~~aievsgl~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~--~~~v~VlgrsaFhDt~l~~S 87 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG--GGVVQVLGRSAFHDTSLESS 87 (291)
T ss_pred cceEEEeccEEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc--CCeEEEcCcCcccccccccc
Confidence 34679999999998543 7887887665554 999999999999964321 2677787765311
Q ss_pred -------hhhcceEEEEecCCCCCCCCcHHhHH----HHHHHHHHHHHHhcCCchh-h-hc-cHHHHHHHHHHHHHhhCC
Q 042733 89 -------ETFARILGYCEQNDIHSPHDTLYDFT----HCLYMFIEEGMELVELNPF-R-QA-LFEQRKRLTVAVEFVANP 154 (531)
Q Consensus 89 -------~~~~~~igyv~Q~~~~~~~ltv~e~~----~~~~~~~~~~l~~l~l~~~-~-~~-~~GerqRv~iA~aL~~~p 154 (531)
.+|.+..+..- +-.+....++.+.. ....++-+.+++.++++-. + ++ +-||||||.|++.|++.=
T Consensus 88 gdl~YLGgeW~~~~~~ag-evplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~Pf 166 (291)
T KOG2355|consen 88 GDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPF 166 (291)
T ss_pred CceeEecccccccccccc-cccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccce
Confidence 11222222222 11222344555431 1112445666676666421 1 11 129999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|+|||-|--||..++..+++.+++-++ +|.||+..||--+ -+.....+++.++. |+++-.-+.
T Consensus 167 kVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD-GLe~Wpthl~yi~~-Gkl~~~l~~ 232 (291)
T KOG2355|consen 167 KVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD-GLETWPTHLVYIKS-GKLVDNLKY 232 (291)
T ss_pred eEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc-chhhcchhEEEecC-Ceeeecccc
Confidence 99999999999999999999999999886 4999999999765 35667789999985 998864443
No 390
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.72 E-value=5.2e-17 Score=166.52 Aligned_cols=179 Identities=19% Similarity=0.218 Sum_probs=133.7
Q ss_pred ceEEEEEeEEEEEeC------CCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 25 PHYISLNEIVYSVDM------PQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~------~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
...++|.+++++|+. +...--..|.+.+||||-||||+.|+|+|...+ .+|+ ...-.++|=
T Consensus 340 ~~lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~-----------~~~~~vSyK 406 (591)
T COG1245 340 DTLVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS-----------EEDLKVSYK 406 (591)
T ss_pred ceeeecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC-----------CccceEeec
Confidence 345677888877752 111234678899999999999999999996543 2232 112247788
Q ss_pred ecCCCCCCCCcHHhHHHHH-------HHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 042733 99 EQNDIHSPHDTLYDFTHCL-------YMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGL 166 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~~~-------~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgL 166 (531)
||--..-...||++..... .....++++-+.|++..++.+ ||.|||+||.+|..++++.+||||++.|
T Consensus 407 PQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~L 486 (591)
T COG1245 407 PQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYL 486 (591)
T ss_pred ceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhc
Confidence 8865444677898862211 123456777788877776665 9999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 167 DARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 167 D~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
|...+..+-+.+++... +++|.+++.||.-. +-...||+++.. |+--.+|
T Consensus 487 DvEqR~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~--GePg~~g 537 (591)
T COG1245 487 DVEQRIIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE--GEPGKHG 537 (591)
T ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe--cCCCccC
Confidence 99999999999999986 48999999999753 344679998884 5554444
No 391
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.71 E-value=1e-16 Score=151.05 Aligned_cols=73 Identities=15% Similarity=0.142 Sum_probs=66.0
Q ss_pred cHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 137 LFEQRKRLTVAVEFV----ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 137 ~~GerqRv~iA~aL~----~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
..|||||+++|++++ .+|+++++|||++|||+..+..+.+.|++++++|.|+|+++|+++ ....+|+++.+..
T Consensus 96 S~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 96 SGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 349999999999996 699999999999999999999999999999877899999999975 4568999999875
No 392
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.71 E-value=3e-17 Score=171.56 Aligned_cols=190 Identities=16% Similarity=0.197 Sum_probs=118.0
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchh---hhc-
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQE---TFA- 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~---~~~- 92 (531)
..+.++++++++. ...+++|+++.+.+| ||||||+|++|.|+..+.+..-++..-....... ...
T Consensus 74 ~dvk~~sls~s~~--g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~ 151 (614)
T KOG0927|consen 74 RDVKIESLSLSFH--GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQA 151 (614)
T ss_pred ccceeeeeeeccC--CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHH
Confidence 4678999999885 467888888666555 9999999999999744322111222211111100 000
Q ss_pred ---------ceEEEEec------CC-CCCCCCcHHhH-----HHHHHHHHHHHHHhcCC-chhhhcc-----HHHHHHHH
Q 042733 93 ---------RILGYCEQ------ND-IHSPHDTLYDF-----THCLYMFIEEGMELVEL-NPFRQAL-----FEQRKRLT 145 (531)
Q Consensus 93 ---------~~igyv~Q------~~-~~~~~ltv~e~-----~~~~~~~~~~~l~~l~l-~~~~~~~-----~GerqRv~ 145 (531)
+++.|..+ ++ ..-...+..+. .+....++..++..+|. .+..++. .|+|.|++
T Consensus 152 v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~a 231 (614)
T KOG0927|consen 152 VVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAA 231 (614)
T ss_pred HhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHH
Confidence 11111100 00 00000011111 01112233444544443 2333333 39999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC-eEEEEecCCchHHHhccCeEEEEccCce-eeecCCCC
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGR-TVVCTIHQPSIDIFYSFDELFLLKQVGQ-EISVGPLG 222 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~-tvi~~~H~~~~~i~~~~d~v~lL~~~G~-~v~~G~~~ 222 (531)
+||+|..+|++|+|||||+|||+.+...+-+.|.+. .+ ++++++|.-+ -+-..|.+|+-+.. ++ +.|.|+.+
T Consensus 232 LAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~---d~~~lVi~sh~QD-fln~vCT~Ii~l~~-kkl~~y~Gnyd 305 (614)
T KOG0927|consen 232 LARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY---DRIILVIVSHSQD-FLNGVCTNIIHLDN-KKLIYYEGNYD 305 (614)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc---cCceEEEEecchh-hhhhHhhhhheecc-cceeeecCCHH
Confidence 999999999999999999999999999999888765 33 8999999755 36678999999986 67 55667653
No 393
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=2.4e-16 Score=180.04 Aligned_cols=100 Identities=22% Similarity=0.258 Sum_probs=84.7
Q ss_pred HHHHHHhcCCchh-hhccH-----HHHHHHHHHHHHhh---CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEE
Q 042733 121 IEEGMELVELNPF-RQALF-----EQRKRLTVAVEFVA---NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCT 191 (531)
Q Consensus 121 ~~~~l~~l~l~~~-~~~~~-----GerqRv~iA~aL~~---~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~ 191 (531)
..+.++.+||... .++.. |||||+.||++|+. +|++++|||||+|||+..+..+++.|+++.++|.|||++
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi 887 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVI 887 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4456778888652 33333 99999999999997 599999999999999999999999999998889999999
Q ss_pred ecCCchHHHhccCeEEEEc-----cCceeeecCCCC
Q 042733 192 IHQPSIDIFYSFDELFLLK-----QVGQEISVGPLG 222 (531)
Q Consensus 192 ~H~~~~~i~~~~d~v~lL~-----~~G~~v~~G~~~ 222 (531)
+|+++. + ..+|+++.|. ++|++++.|+++
T Consensus 888 ~H~~~~-i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~ 921 (924)
T TIGR00630 888 EHNLDV-I-KTADYIIDLGPEGGDGGGTIVASGTPE 921 (924)
T ss_pred eCCHHH-H-HhCCEEEEecCCccCCCCEEEEeCCHH
Confidence 999863 4 6799999993 359999999863
No 394
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.68 E-value=4.4e-16 Score=163.98 Aligned_cols=178 Identities=24% Similarity=0.223 Sum_probs=130.2
Q ss_pred cceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcce
Q 042733 24 EPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARI 94 (531)
Q Consensus 24 ~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ 94 (531)
....+++++|+..-+..+..+.+|+|+.+..| |||||+|+|+|+|+.+. ..|.+.-...... +.
T Consensus 430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~--~~G~l~k~~~~~~-----~~ 502 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS--TGGKLTKPTDGGP-----KD 502 (659)
T ss_pred ccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc--CCCeEEecccCCC-----Cc
Confidence 34789999999988754446778899888766 99999999999999773 2456554332211 34
Q ss_pred EEEEecCCCCCCCCcHHhH------------HHHHHHHHHHHHHhcCCchhhhcc----------------HHHHHHHHH
Q 042733 95 LGYCEQNDIHSPHDTLYDF------------THCLYMFIEEGMELVELNPFRQAL----------------FEQRKRLTV 146 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~------------~~~~~~~~~~~l~~l~l~~~~~~~----------------~GerqRv~i 146 (531)
+-|+||.|.+.-. |.|+. +....+.+.+.++.++|.|..++. .||+||+++
T Consensus 503 lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ 581 (659)
T KOG0060|consen 503 LFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAF 581 (659)
T ss_pred eEEecCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHH
Confidence 7899998754332 66653 111223455666666666554332 299999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
||.+.++|++-+|||-||++|......+.+.+++ .|.|.|-+.|..+. ...-|.++-|+.+|+
T Consensus 582 ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkSL--~kfHd~~L~~~g~g~ 644 (659)
T KOG0060|consen 582 ARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKSL--WKFHDYVLRMDGRGS 644 (659)
T ss_pred HHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHHH--HhhhhEEEEecCCCc
Confidence 9999999999999999999999999888887775 49999999998764 444577777764343
No 395
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.68 E-value=3.6e-16 Score=151.60 Aligned_cols=75 Identities=15% Similarity=0.086 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHH----hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C-CeEEEEecCCchHHHhccC--eEEEE
Q 042733 138 FEQRKRLTVAVEF----VANPSIISRDEPISGLDARAATTVIRMVRNTVDM-G-RTVVCTIHQPSIDIFYSFD--ELFLL 209 (531)
Q Consensus 138 ~GerqRv~iA~aL----~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g-~tvi~~~H~~~~~i~~~~d--~v~lL 209 (531)
.|||||+.++.++ +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||+... +.+.+| ++++|
T Consensus 129 ~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~~v~~l 207 (213)
T cd03277 129 GGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKMTVLCV 207 (213)
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCceEEEEE
Confidence 3999998877554 5899999999999999999999999999998876 5 579999998753 445555 78888
Q ss_pred ccCce
Q 042733 210 KQVGQ 214 (531)
Q Consensus 210 ~~~G~ 214 (531)
.+ |+
T Consensus 208 ~~-g~ 211 (213)
T cd03277 208 YN-GP 211 (213)
T ss_pred ec-Cc
Confidence 75 65
No 396
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.68 E-value=8.1e-19 Score=167.80 Aligned_cols=180 Identities=18% Similarity=0.210 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHhhcchHHH----------------------------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 042733 309 TKLFAWSWKLAQQRWTKQQHL----------------------------FNVMVSMYTAVLFLLVQNAGSLQLVAAVEWT 360 (531)
Q Consensus 309 ~q~~~l~~R~~~~~~~~~~~~----------------------------~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~ 360 (531)
+|++.+++|+++..|++..-. .++.|++++.+.+..+....+.......||.
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGFNRPGLIFGSIIFSFFSSISGSSISFERERG 80 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeehhhHHhhhhhcccchhhhhhhcc
Confidence 588888898888766443211 1233333333333333333333345678999
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 042733 361 IFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKP 440 (531)
Q Consensus 361 v~~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~ 440 (531)
.+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +|+.+++.+++..++..++|.++++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~ 158 (210)
T PF01061_consen 81 TLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPSF 158 (210)
T ss_pred ccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhhh
Confidence 999999999999999999999999999999999999999999999887 788888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhc
Q 042733 441 QIAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDF 490 (531)
Q Consensus 441 ~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef 490 (531)
+.|..+++++..++++++|.++|.+.+|.|+ |+. +||++|+.|++..++|
T Consensus 159 ~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 159 RDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999899 998 9999999999998876
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.67 E-value=2.9e-16 Score=150.84 Aligned_cols=77 Identities=13% Similarity=0.062 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeee
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR-MVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS 217 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~ 217 (531)
||||++.++++ +.+|+++++|||++|||+..+..+.. .++.+.+.|.++|++||+. ++...+|++..+.+ |++.+
T Consensus 95 g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~-g~l~~ 170 (200)
T cd03280 95 HMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVEN-ASMEF 170 (200)
T ss_pred HHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEE-EEEEE
Confidence 89999999987 58999999999999999999999964 6788877799999999983 56788999999986 89987
Q ss_pred cC
Q 042733 218 VG 219 (531)
Q Consensus 218 ~G 219 (531)
.+
T Consensus 171 ~~ 172 (200)
T cd03280 171 DP 172 (200)
T ss_pred ec
Confidence 74
No 398
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2e-16 Score=160.92 Aligned_cols=176 Identities=18% Similarity=0.313 Sum_probs=125.7
Q ss_pred ccceEEEEEeEEEEEeCCCccccccEE---------EEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcc
Q 042733 23 FEPHYISLNEIVYSVDMPQIGDLNSLS---------GAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFAR 93 (531)
Q Consensus 23 ~~~~~l~~~~ls~~~~~~~~~iL~~vs---------~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~ 93 (531)
..|..+-++||+|.|+. .++++++++ ..+||||.||||||++|.|...+ ..|+.+- ..+-
T Consensus 582 L~PPvLGlH~VtFgy~g-qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RK--------nhrL 650 (807)
T KOG0066|consen 582 LNPPVLGLHDVTFGYPG-QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRK--------NHRL 650 (807)
T ss_pred CCCCeeecccccccCCC-CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhc--------ccee
Confidence 35778999999999973 455666554 57899999999999999997654 2343321 2344
Q ss_pred eEEEEecCCC--CCCCCcHHhHHHH----HHHHHHHHHHhcCCchhhhccH------HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 94 ILGYCEQNDI--HSPHDTLYDFTHC----LYMFIEEGMELVELNPFRQALF------EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 94 ~igyv~Q~~~--~~~~ltv~e~~~~----~~~~~~~~l~~l~l~~~~~~~~------GerqRv~iA~aL~~~p~lllLDE 161 (531)
+||+..|... +....|..|+... -.+.....+..+||...+++.- |||-||++|..-+..|+||||||
T Consensus 651 ~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDE 730 (807)
T KOG0066|consen 651 RIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDE 730 (807)
T ss_pred eeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecC
Confidence 6888777532 3334444444111 1233455677788877666643 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCc
Q 042733 162 PISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVG 213 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G 213 (531)
||++||..+...+-+.+++. ...||+++||-.. +.+.-..+.++.+.|
T Consensus 731 PTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~ 778 (807)
T KOG0066|consen 731 PTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQG 778 (807)
T ss_pred CCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCC
Confidence 99999999999998888775 3469999999653 444444566665434
No 399
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=5.7e-16 Score=161.20 Aligned_cols=179 Identities=17% Similarity=0.201 Sum_probs=130.7
Q ss_pred cceEEEEEeEEEEEeCCCccccccEE---------EEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcce
Q 042733 24 EPHYISLNEIVYSVDMPQIGDLNSLS---------GAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARI 94 (531)
Q Consensus 24 ~~~~l~~~~ls~~~~~~~~~iL~~vs---------~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ 94 (531)
.+..+++.++++.|+.+.-+++.+++ ..++++|+||||++|++.|...+ ..|.+.++ .|.+
T Consensus 359 ~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~--~rgi~~~~--------~r~r 428 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP--TRGIVGRH--------PRLR 428 (582)
T ss_pred CCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc--ccceeeec--------ccce
Confidence 56789999999999743324555555 34567799999999999995432 23443333 2456
Q ss_pred EEEEecCCCCCCCCcHHhHHH-------HHHHHHHHHHHhcCCch-hhhcc-----HHHHHHHHHHHHHhhCCCeEEEeC
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH-------CLYMFIEEGMELVELNP-FRQAL-----FEQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~-------~~~~~~~~~l~~l~l~~-~~~~~-----~GerqRv~iA~aL~~~p~lllLDE 161 (531)
++|-.|...-+..++|.+... ...+.++.-+..+|++. .+... .|||-||++|.....+|.+|+|||
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDE 508 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDE 508 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecC
Confidence 889888765444444443311 12334566788888864 33333 299999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeee
Q 042733 162 PISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS 217 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~ 217 (531)
||+.||..+-..+.+.|+.. +-.||++|||.+ -+-..|+.+.+..+ |++.-
T Consensus 509 PTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~-g~vt~ 559 (582)
T KOG0062|consen 509 PTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVED-GKVTP 559 (582)
T ss_pred CCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcC-CcEEe
Confidence 99999999999888888775 446999999965 36678999999986 77753
No 400
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.5e-15 Score=158.01 Aligned_cols=172 Identities=17% Similarity=0.164 Sum_probs=107.2
Q ss_pred ceEEEEEeEEEEEeCCCccccccEE---------EEEcCCCchHHHHHHHHhCCC-CCceEEEEEEEcCcccc----hhh
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLS---------GAFRPGGAGKTTLMDVLAGRK-PGGYITRNITVSGYPEK----QET 90 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs---------~~i~~gGaGKTTLLk~L~G~~-~~g~~~G~i~~~g~~~~----~~~ 90 (531)
..+|...+.+..|+ .+.+|++-+ |.+|+||+|||||||+|+.-. +.-.+.-++.-...+.. ..+
T Consensus 78 ~~Di~~~~fdLa~G--~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D 155 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG--GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESD 155 (582)
T ss_pred ccceeeeeeeeeec--chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhcc
Confidence 34678888888885 566777655 556677999999999998721 10001111110000000 000
Q ss_pred hcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhc------cHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQA------LFEQRKRLTVAVEFVANPSIISRDEPIS 164 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~------~~GerqRv~iA~aL~~~p~lllLDEPts 164 (531)
.. +.-++.++..+...+ ...+..+.+|..+|.++-... +.|-|-|+++||||..+|++|+|||||+
T Consensus 156 ~~-~~dfl~~e~~l~~~~-------~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTN 227 (582)
T KOG0062|consen 156 TE-RLDFLAEEKELLAGL-------TLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTN 227 (582)
T ss_pred HH-HHHHHHhhhhhhccc-------hHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcc
Confidence 00 001111211111100 112223447777887654332 2389999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 165 GLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 165 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
.||..+...+-+.|..+ +.|+|+++||-+ -+-..|..|+-+.
T Consensus 228 hLDv~av~WLe~yL~t~---~~T~liVSHDr~-FLn~V~tdIIH~~ 269 (582)
T KOG0062|consen 228 HLDVVAVAWLENYLQTW---KITSLIVSHDRN-FLNTVCTDIIHLE 269 (582)
T ss_pred cchhHHHHHHHHHHhhC---CceEEEEeccHH-HHHHHHHHHHHHh
Confidence 99999999999988775 489999999954 2445677777665
No 401
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.61 E-value=1.9e-15 Score=155.24 Aligned_cols=166 Identities=21% Similarity=0.256 Sum_probs=116.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchh------------hhcc------eEEEEecCCCCCC-
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQE------------TFAR------ILGYCEQNDIHSP- 106 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~------------~~~~------~igyv~Q~~~~~~- 106 (531)
..|.|.+|+||-||||-+|+|+|...+. -| ..++.|..+. .+++ ++..=+|--.+.|
T Consensus 100 G~V~GilG~NGiGKsTalkILaGel~PN--LG--~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk 175 (591)
T COG1245 100 GKVVGILGPNGIGKSTALKILAGELKPN--LG--RYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPK 175 (591)
T ss_pred CcEEEEEcCCCccHHHHHHHHhCccccC--CC--CCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHH
Confidence 4699999999999999999999964431 11 1122111100 0110 1111122211111
Q ss_pred --CCcHHhHHHHH--HHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 042733 107 --HDTLYDFTHCL--YMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRM 177 (531)
Q Consensus 107 --~ltv~e~~~~~--~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~ 177 (531)
.-||.|..+.. ....+++++.++|++..++-+ ||-||++||.++.+++++.++|||||-||...+....+.
T Consensus 176 ~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~ 255 (591)
T COG1245 176 VVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARV 255 (591)
T ss_pred HhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHH
Confidence 12555542222 235788999999998877766 999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEecCCchHHHh-ccCeEEEEccCceeeecC
Q 042733 178 VRNTVDMGRTVVCTIHQPSIDIFY-SFDELFLLKQVGQEISVG 219 (531)
Q Consensus 178 L~~l~~~g~tvi~~~H~~~~~i~~-~~d~v~lL~~~G~~v~~G 219 (531)
++++++.+++||++.||+. +.+ +.|-|.++. |+--..|
T Consensus 256 Irel~~~~k~ViVVEHDLa--vLD~lsD~vhI~Y--G~pg~YG 294 (591)
T COG1245 256 IRELAEDGKYVIVVEHDLA--VLDYLSDFVHILY--GEPGVYG 294 (591)
T ss_pred HHHHhccCCeEEEEechHH--HHHHhhheeEEEe--cCCccce
Confidence 9999988999999999975 444 578887775 5444444
No 402
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=7e-15 Score=148.31 Aligned_cols=72 Identities=21% Similarity=0.303 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccC
Q 042733 138 FEQRKRLTVAVEFVA----NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQV 212 (531)
Q Consensus 138 ~GerqRv~iA~aL~~----~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~ 212 (531)
.|||||+++|++++. +|+++++||||+|||+..+..+.+.++++.+ +.|+|++||++. +...+|+++.+.++
T Consensus 173 ~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~~~ 248 (276)
T cd03241 173 GGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVEKE 248 (276)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEEEe
Confidence 399999999997654 9999999999999999999999999999864 789999999975 46789999999863
No 403
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.59 E-value=9.2e-15 Score=135.71 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 138 FEQRKRLTVAVEFVA----NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 138 ~GerqRv~iA~aL~~----~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
.||+||+++|++|.. +|+++++|||++|+|+..+..+.+.+.++.++|.++|++||+++ +.+.+|+++.|..
T Consensus 80 ~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~~ 155 (162)
T cd03227 80 GGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIKK 155 (162)
T ss_pred ccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEEE
Confidence 389999999999987 78999999999999999999999999987666889999999975 4567899999864
No 404
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.57 E-value=5.4e-15 Score=141.88 Aligned_cols=122 Identities=14% Similarity=0.127 Sum_probs=83.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
++.+..||||||||||+|+|+|... +...|.+... + .+++|.+.+++.+|+.|+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a----~--~~~~q~~~l~~~~~~~d~l~~---------- 82 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCA----S--SFELPPVKIFTSIRVSDDLRD---------- 82 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEec----C--ccCcccceEEEeccchhcccc----------
Confidence 5778999999999999999998431 0112222211 1 255666777888888775211
Q ss_pred hcCCchhhhccHHHHHHHHHHHHHhh--CCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHHcCCeEEEEecCCch
Q 042733 127 LVELNPFRQALFEQRKRLTVAVEFVA--NPSIISRDEPISGLDARAATTVI-RMVRNTVDMGRTVVCTIHQPSI 197 (531)
Q Consensus 127 ~l~l~~~~~~~~GerqRv~iA~aL~~--~p~lllLDEPtsgLD~~~~~~i~-~~L~~l~~~g~tvi~~~H~~~~ 197 (531)
++... ..+++|+.-+...+. +|+++++|||++|+|+..+..+. ..++.+.+.|.|+|++||+++.
T Consensus 83 --~~s~~----~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~ 150 (199)
T cd03283 83 --GISYF----YAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLEL 150 (199)
T ss_pred --ccChH----HHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHH
Confidence 11110 123344544444455 99999999999999999998775 4688887779999999999763
No 405
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.54 E-value=2.7e-14 Score=163.70 Aligned_cols=96 Identities=20% Similarity=0.274 Sum_probs=84.7
Q ss_pred HHHhcCCchh-hhccH-----HHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 124 GMELVELNPF-RQALF-----EQRKRLTVAVEFVANP--SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 124 ~l~~l~l~~~-~~~~~-----GerqRv~iA~aL~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
.++.+||.+. .++.+ ||||||.||++|..+| ++++|||||+|||+..+.++.+.|++++++|.|||+++|++
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 5777888755 45554 9999999999999997 99999999999999999999999999988899999999998
Q ss_pred chHHHhccCeEEEE------ccCceeeecCCCC
Q 042733 196 SIDIFYSFDELFLL------KQVGQEISVGPLG 222 (531)
Q Consensus 196 ~~~i~~~~d~v~lL------~~~G~~v~~G~~~ 222 (531)
+ ++ ..+|++++| . +|++++.|+++
T Consensus 552 ~-~i-~~aD~vi~LgpgaG~~-~G~iv~~g~~~ 581 (943)
T PRK00349 552 D-TI-RAADYIVDIGPGAGVH-GGEVVASGTPE 581 (943)
T ss_pred H-HH-HhCCEEEEeccccCCC-CCEEeeccCHH
Confidence 7 34 469999999 6 49999999864
No 406
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.53 E-value=3.1e-14 Score=137.00 Aligned_cols=144 Identities=10% Similarity=0.000 Sum_probs=94.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
++....||||||||||||+|++..--+ ..|. .... .+..+++..|...+ ....+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~-~~g~------~~~~--~~~~i~~~dqi~~~---~~~~d~------------- 84 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLA-QIGC------FVPA--ESASIPLVDRIFTR---IGAEDS------------- 84 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHH-HcCC------Cccc--cccccCCcCEEEEE---ecCccc-------------
Confidence 678899999999999999999521000 0011 0000 01223443332111 111110
Q ss_pred hcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCeEEEEecCCchHHHhccCe
Q 042733 127 LVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR-MVRNTVDMGRTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 127 ~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~d~ 205 (531)
+.....+..++.||++.+.+++.+|+++++||||+|+|+.....+.. +++.+.+.+.++|++||++ ++.+.+|+
T Consensus 85 ---i~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~ 159 (202)
T cd03243 85 ---ISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH--ELADLPEQ 159 (202)
T ss_pred ---ccCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH--HHHHHhhc
Confidence 00001112256777888899999999999999999999999888765 5666766789999999985 46778888
Q ss_pred EEEEccCceeeecCCC
Q 042733 206 LFLLKQVGQEISVGPL 221 (531)
Q Consensus 206 v~lL~~~G~~v~~G~~ 221 (531)
+..++. |++...++.
T Consensus 160 ~~~l~~-~~~~~~~~~ 174 (202)
T cd03243 160 VPGVKN-LHMEELITT 174 (202)
T ss_pred CCCeEE-EEEEEEecC
Confidence 888876 888877754
No 407
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.53 E-value=2.3e-14 Score=139.84 Aligned_cols=149 Identities=13% Similarity=0.089 Sum_probs=100.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE-EEecCCCCCC
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG-YCEQNDIHSP 106 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig-yv~Q~~~~~~ 106 (531)
...+|++...+. .++.+..||||+|||||+|+++-. .+...+| |||.+....+
T Consensus 18 ~v~~~~~~~~~~------~~~~~l~G~n~~GKstll~~i~~~--------------------~~la~~g~~vpa~~~~~~ 71 (222)
T cd03285 18 FIPNDVTLTRGK------SRFLIITGPNMGGKSTYIRQIGVI--------------------VLMAQIGCFVPCDSADIP 71 (222)
T ss_pred eEEeeEEEeecC------CeEEEEECCCCCChHHHHHHHHHH--------------------HHHHHhCCCcCcccEEEe
Confidence 346677665531 357788899999999999999721 0011122 4444321111
Q ss_pred CCcHHhHHHHHHHHHHHHHHhcCCchhh--hccHHHHHHHHHHHHH--hhCCCeEEEeCC---CCCCCHHHHHHHHHHHH
Q 042733 107 HDTLYDFTHCLYMFIEEGMELVELNPFR--QALFEQRKRLTVAVEF--VANPSIISRDEP---ISGLDARAATTVIRMVR 179 (531)
Q Consensus 107 ~ltv~e~~~~~~~~~~~~l~~l~l~~~~--~~~~GerqRv~iA~aL--~~~p~lllLDEP---tsgLD~~~~~~i~~~L~ 179 (531)
..+++++.+++.+.. +.+.|+++++.+++++ +.+|++++|||| |++||+.+.... .++
T Consensus 72 -------------~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~ 136 (222)
T cd03285 72 -------------IVDCILARVGASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAE 136 (222)
T ss_pred -------------ccceeEeeeccccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHH
Confidence 122334444444322 2234889999999998 899999999999 999999888543 334
Q ss_pred HHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 180 NTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 180 ~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
.+.+ .|.++|++||+ .++.+.||++..+++ |++...+.
T Consensus 137 ~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~-g~~~~~~~ 175 (222)
T cd03285 137 YIATQIKCFCLFATHF--HELTALADEVPNVKN-LHVTALTD 175 (222)
T ss_pred HHHhcCCCeEEEEech--HHHHHHhhcCCCeEE-EEEEEEEe
Confidence 4544 48899999996 467889999999986 89887764
No 408
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.51 E-value=7.2e-14 Score=159.93 Aligned_cols=95 Identities=21% Similarity=0.296 Sum_probs=82.3
Q ss_pred HHhcCCchh-hhccH-----HHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 125 MELVELNPF-RQALF-----EQRKRLTVAVEFVANP--SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 125 l~~l~l~~~-~~~~~-----GerqRv~iA~aL~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
+..+||... .++.+ ||+|||.||++|..+| ++++|||||+|||+..+..+.+.|++++++|.|||+++|+++
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~ 550 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE 550 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 566677654 34433 9999999999999986 899999999999999999999999999888999999999976
Q ss_pred hHHHhccCeEEEE------ccCceeeecCCCC
Q 042733 197 IDIFYSFDELFLL------KQVGQEISVGPLG 222 (531)
Q Consensus 197 ~~i~~~~d~v~lL------~~~G~~v~~G~~~ 222 (531)
.+ ..||+++.| + +|++++.|+++
T Consensus 551 -~i-~~aD~vi~LgpgaG~~-~G~Iv~~g~~~ 579 (924)
T TIGR00630 551 -TI-RAADYVIDIGPGAGIH-GGEVVASGTPE 579 (924)
T ss_pred -HH-hhCCEEEEecccccCC-CCEEeeccCHH
Confidence 34 589999999 6 59999999864
No 409
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.45 E-value=1.9e-13 Score=149.12 Aligned_cols=82 Identities=22% Similarity=0.344 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc-----
Q 042733 139 EQRKRLTVAVEFVANP---SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK----- 210 (531)
Q Consensus 139 GerqRv~iA~aL~~~p---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~----- 210 (531)
||.|||-+|.+|..+. .+.+|||||+||-....+++++.|.+|.++|.|||++.|+++ +...+|.|+=|-
T Consensus 826 GEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~ 903 (935)
T COG0178 826 GEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD--VIKTADWIIDLGPEGGD 903 (935)
T ss_pred hHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc--eEeecCEEEEcCCCCCC
Confidence 8999999999999887 899999999999999999999999999999999999999875 788899999874
Q ss_pred cCceeeecCCCC
Q 042733 211 QVGQEISVGPLG 222 (531)
Q Consensus 211 ~~G~~v~~G~~~ 222 (531)
.||++++.|+|+
T Consensus 904 ~GG~iva~GTPe 915 (935)
T COG0178 904 GGGEIVASGTPE 915 (935)
T ss_pred CCceEEEecCHH
Confidence 578999999985
No 410
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.45 E-value=4.3e-13 Score=134.07 Aligned_cols=135 Identities=18% Similarity=0.205 Sum_probs=91.5
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc----hhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHH
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK----QETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEG 124 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~----~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~ 124 (531)
.+.+||+|||||||+++|+|..++ .+|++.++|.+.. ..++.+.+++++|++. .+..+|.++-..
T Consensus 114 ~~i~g~~g~GKttl~~~l~~~~~~--~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~-~~r~~v~~~~~k-------- 182 (270)
T TIGR02858 114 TLIISPPQCGKTTLLRDLARILST--GISQLGLRGKKVGIVDERSEIAGCVNGVPQHDV-GIRTDVLDGCPK-------- 182 (270)
T ss_pred EEEEcCCCCCHHHHHHHHhCccCC--CCceEEECCEEeecchhHHHHHHHhcccccccc-cccccccccchH--------
Confidence 478899999999999999998764 3689999998753 2345556788898753 345555543110
Q ss_pred HHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHH----
Q 042733 125 MELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIF---- 200 (531)
Q Consensus 125 l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~---- 200 (531)
.....+....++|+++++|||++ .+.+..+++.+ ++|.++|+++|+++.+-.
T Consensus 183 -----------------~~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~~G~~vI~ttH~~~~~~~~~r~ 238 (270)
T TIGR02858 183 -----------------AEGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-HAGVSIIATAHGRDVEDLYKRP 238 (270)
T ss_pred -----------------HHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-hCCCEEEEEechhHHHHHHhCh
Confidence 11112333447999999999974 23344445444 469999999998654222
Q ss_pred --------hccCeEEEEccCceeeecCCC
Q 042733 201 --------YSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 201 --------~~~d~v~lL~~~G~~v~~G~~ 221 (531)
..|||+++|++ |+ ..|++
T Consensus 239 ~~~~l~~~~~~~r~i~L~~-~~--~~g~~ 264 (270)
T TIGR02858 239 VFKELIENEAFERYVVLSR-RK--GPGTV 264 (270)
T ss_pred HHHHHHhcCceEEEEEEec-CC--CCCce
Confidence 56899999986 55 55554
No 411
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.44 E-value=3.8e-13 Score=160.83 Aligned_cols=96 Identities=19% Similarity=0.231 Sum_probs=83.4
Q ss_pred HHhcCCchh-hhccH-----HHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 125 MELVELNPF-RQALF-----EQRKRLTVAVEFVANP--SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 125 l~~l~l~~~-~~~~~-----GerqRv~iA~aL~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
+..+|+.+. .++.+ ||+|||.||++|..+| ++++|||||+|||+.++..+.+.|++++++|.|||+++|+++
T Consensus 460 L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~ 539 (1809)
T PRK00635 460 LIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQ 539 (1809)
T ss_pred HHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence 455677754 34443 9999999999999999 899999999999999999999999999888999999999976
Q ss_pred hHHHhccCeEEEEc-----cCceeeecCCCC
Q 042733 197 IDIFYSFDELFLLK-----QVGQEISVGPLG 222 (531)
Q Consensus 197 ~~i~~~~d~v~lL~-----~~G~~v~~G~~~ 222 (531)
+.+.||++++|. .+|++++.|+++
T Consensus 540 --vi~~aDrVi~L~pGag~~gG~Iv~~G~~~ 568 (1809)
T PRK00635 540 --MISLADRIIDIGPGAGIFGGEVLFNGSPR 568 (1809)
T ss_pred --HHHhCCEEEEEcCCcccCCCEEEEecCHH
Confidence 568899999995 248999999864
No 412
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.41 E-value=5e-13 Score=139.43 Aligned_cols=156 Identities=22% Similarity=0.247 Sum_probs=104.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcC---------CCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRP---------GGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~---------gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
|.++|+-.-.+. ...+...+++.++| ||||||+|.|+|+|+.+- ++|.-..+ ....+-|+
T Consensus 482 I~lenIpvItP~-~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv--------y~g~L~~P--~~~~mFYI 550 (728)
T KOG0064|consen 482 IILENIPVITPA-GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV--------YNGLLSIP--RPNNIFYI 550 (728)
T ss_pred eEEecCceeccC-cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc--------cCCeeecC--CCcceEec
Confidence 555555443331 22355566665555 499999999999999862 22321111 12348899
Q ss_pred ecCCCCCCCCcHHh----------HHH--HHHHHHHHHHHhcCCchhhhcc--------------HHHHHHHHHHHHHhh
Q 042733 99 EQNDIHSPHDTLYD----------FTH--CLYMFIEEGMELVELNPFRQAL--------------FEQRKRLTVAVEFVA 152 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e----------~~~--~~~~~~~~~l~~l~l~~~~~~~--------------~GerqRv~iA~aL~~ 152 (531)
||.|... .-|.+| ..+ ...+..+.+++.+.|++...+- .|||||+++||.+.+
T Consensus 551 PQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yH 629 (728)
T KOG0064|consen 551 PQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYH 629 (728)
T ss_pred cCCCccC-cCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhc
Confidence 9986543 223333 211 1122344555555555443332 189999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchH
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSID 198 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 198 (531)
+|+.-+|||-||+..+.....+.+..++ .|.+.|-++|+|+..
T Consensus 630 rPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpslw 672 (728)
T KOG0064|consen 630 RPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSLW 672 (728)
T ss_pred CcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccHH
Confidence 9999999999999999998888887765 499999999999853
No 413
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.7e-13 Score=139.81 Aligned_cols=185 Identities=16% Similarity=0.144 Sum_probs=115.9
Q ss_pred ceEEEEEeEEEEEeCCCccccccE---------EEEEcCCCchHHHHHHHHhCCC---CCce----EEEEEEEcCcccch
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSL---------SGAFRPGGAGKTTLMDVLAGRK---PGGY----ITRNITVSGYPEKQ 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~v---------s~~i~~gGaGKTTLLk~L~G~~---~~g~----~~G~i~~~g~~~~~ 88 (531)
.+.|.++|.+.+.. .+.++.+- .|.+||||-|||||||.|+.+. ++.. ..-+|..+..+.-.
T Consensus 262 a~DIKiEnF~ISA~--Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~ 339 (807)
T KOG0066|consen 262 AMDIKIENFDISAQ--GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAID 339 (807)
T ss_pred cccceeeeeeeecc--cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHH
Confidence 46788888777664 23333333 3667899999999999999862 2211 11223333222100
Q ss_pred ----hhhcceEEEEecCCCC-----CCCCcHHhHH------------HHHHHHHHHHHHhcCCchhhhcc------HHHH
Q 042733 89 ----ETFARILGYCEQNDIH-----SPHDTLYDFT------------HCLYMFIEEGMELVELNPFRQAL------FEQR 141 (531)
Q Consensus 89 ----~~~~~~igyv~Q~~~~-----~~~ltv~e~~------------~~~~~~~~~~l~~l~l~~~~~~~------~Ger 141 (531)
.+. ++...+..++.+ -...|+.|-. .....+...++.-+|.++-.... .|-|
T Consensus 340 tvl~aD~-kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWR 418 (807)
T KOG0066|consen 340 TVLKADK-KRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWR 418 (807)
T ss_pred HHHHhhH-HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCcee
Confidence 000 111111111110 1223443320 01123455667777765433222 2899
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeee
Q 042733 142 KRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS 217 (531)
Q Consensus 142 qRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~ 217 (531)
-||++||||..+|-+|.|||||++||..+...+-+.|+.++ +|.++++||-+. +-..|..|+-|++ -++-|
T Consensus 419 MRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQgF-LD~VCtdIIHLD~-qkLhy 489 (807)
T KOG0066|consen 419 MRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQGF-LDSVCTDIIHLDN-QKLHY 489 (807)
T ss_pred eehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccch-HHHHHHHHhhhhh-hhhhh
Confidence 99999999999999999999999999999999988988874 599999999763 5567899999986 45543
No 414
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=3.2e-12 Score=128.55 Aligned_cols=71 Identities=14% Similarity=0.267 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhcc---CeE
Q 042733 139 EQRKRLTVAVEFV---------ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSF---DEL 206 (531)
Q Consensus 139 GerqRv~iA~aL~---------~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~---d~v 206 (531)
||||++++|++|+ .+|+++++||||++||+..+..+.+.++++ + .+++++|+.. .+...| +++
T Consensus 187 Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~-q~ii~~~~~~-~~~~~~~~~~~i 261 (270)
T cd03242 187 GQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---V-QTFVTTTDLA-DFDALWLRRAQI 261 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---C-CEEEEeCCch-hccchhccCccE
Confidence 9999999999985 799999999999999999999999999765 2 3555555543 344555 678
Q ss_pred EEEccCcee
Q 042733 207 FLLKQVGQE 215 (531)
Q Consensus 207 ~lL~~~G~~ 215 (531)
+.+++ |++
T Consensus 262 ~~l~~-g~i 269 (270)
T cd03242 262 FRVDA-GTL 269 (270)
T ss_pred EEEeC-cEE
Confidence 88875 774
No 415
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.39 E-value=1.2e-12 Score=133.27 Aligned_cols=163 Identities=22% Similarity=0.243 Sum_probs=114.9
Q ss_pred cccccEEEEEcCC---------CchHHHHHHHHhCCCCC------ceEEEEEEEcCcccchhhhcceEEEEecCCC-CCC
Q 042733 43 GDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG------GYITRNITVSGYPEKQETFARILGYCEQNDI-HSP 106 (531)
Q Consensus 43 ~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~------g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~-~~~ 106 (531)
.+|+|+++.++|| ||||||||++|.|.... .+.+|.+.+--.. ..+.+|-+.. -+.
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~f~ 468 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYEPEFG 468 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCcccccccC
Confidence 6899999999999 99999999999995321 1234555442211 1233333321 122
Q ss_pred CCcHHhHHHHH---HHHHHHHHHhcCCchh-------hhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 042733 107 HDTLYDFTHCL---YMFIEEGMELVELNPF-------RQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR 176 (531)
Q Consensus 107 ~ltv~e~~~~~---~~~~~~~l~~l~l~~~-------~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~ 176 (531)
..|+.|..... -....++++..|+.+. .+.+.|||.|+.||.++..+|.+++.||--+.||+.++..+.+
T Consensus 469 ~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVAr 548 (593)
T COG2401 469 EVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVAR 548 (593)
T ss_pred chhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHH
Confidence 34554431111 1225567888888642 2333499999999999999999999999999999999999999
Q ss_pred HHHHHHHc-CCeEEEEecCCchHHHhc-cCeEEEEccCcee
Q 042733 177 MVRNTVDM-GRTVVCTIHQPSIDIFYS-FDELFLLKQVGQE 215 (531)
Q Consensus 177 ~L~~l~~~-g~tvi~~~H~~~~~i~~~-~d~v~lL~~~G~~ 215 (531)
-+.+++++ |.|++++||.|+. +-.+ -|+++++.- |++
T Consensus 549 kiselaRe~giTlivvThrpEv-~~AL~PD~li~vgY-g~v 587 (593)
T COG2401 549 KISELAREAGITLIVVTHRPEV-GNALRPDTLILVGY-GKV 587 (593)
T ss_pred HHHHHHHHhCCeEEEEecCHHH-HhccCCceeEEeec-ccc
Confidence 99999975 9999999999863 2233 488887754 443
No 416
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.31 E-value=9e-12 Score=119.94 Aligned_cols=131 Identities=11% Similarity=0.133 Sum_probs=81.4
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCC
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPH 107 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ 107 (531)
...+|+++..+. .++.+..||||+|||||+|++++..--. . -|. ++| ...+.
T Consensus 17 ~v~~~~~~~~~~------~~~~~l~G~n~~GKstll~~i~~~~~la----~---~G~------------~vp---a~~~~ 68 (204)
T cd03282 17 FIPNDIYLTRGS------SRFHIITGPNMSGKSTYLKQIALLAIMA----Q---IGC------------FVP---AEYAT 68 (204)
T ss_pred EEEeeeEEeeCC------CcEEEEECCCCCCHHHHHHHHHHHHHHH----H---cCC------------Ccc---hhhcC
Confidence 456777766642 2678889999999999999998742100 0 011 111 01111
Q ss_pred CcHHhHHHHHHHHHHHHHHhcCCch----hhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHH
Q 042733 108 DTLYDFTHCLYMFIEEGMELVELNP----FRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTV-IRMVRNTV 182 (531)
Q Consensus 108 ltv~e~~~~~~~~~~~~l~~l~l~~----~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i-~~~L~~l~ 182 (531)
+++.+ +++..++..+ -..+..+|.+|+..+.+++.+|++++||||++|+|+.....+ ...++.+.
T Consensus 69 l~~~d----------~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~ 138 (204)
T cd03282 69 LPIFN----------RLLSRLSNDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI 138 (204)
T ss_pred ccChh----------heeEecCCccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH
Confidence 11111 1111112111 111112444466777888999999999999999999876665 45677777
Q ss_pred HcCCeEEEEecCCc
Q 042733 183 DMGRTVVCTIHQPS 196 (531)
Q Consensus 183 ~~g~tvi~~~H~~~ 196 (531)
+.|.++|++||+.+
T Consensus 139 ~~~~~~i~~TH~~~ 152 (204)
T cd03282 139 KKESTVFFATHFRD 152 (204)
T ss_pred hcCCEEEEECChHH
Confidence 78999999999865
No 417
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.30 E-value=6.9e-12 Score=121.94 Aligned_cols=142 Identities=13% Similarity=-0.008 Sum_probs=91.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
++....||||||||||||+|++..--+ . .|..... .+..++++.| .++.+++.++...
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~----~---~g~~vp~--~~~~i~~~~~---i~~~~~~~~~ls~---------- 88 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLA----Q---IGSFVPA--SKAEIGVVDR---IFTRIGASDDLAG---------- 88 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHh----c---cCCeecc--ccceecceee---EeccCCchhhhcc----------
Confidence 667889999999999999998732110 0 1211111 1245677755 3566666553211
Q ss_pred hcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCC---CCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhc
Q 042733 127 LVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEP---ISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYS 202 (531)
Q Consensus 127 ~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEP---tsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~ 202 (531)
|. .+...|+++++-+...+.+|++++|||| |+++|..+. ....++.+.+. +.++|++||+. ++.+.
T Consensus 89 --g~----s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l 158 (216)
T cd03284 89 --GR----STFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTEL 158 (216)
T ss_pred --Cc----chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHH
Confidence 11 1112455666666666789999999999 888887552 23345555555 88999999995 46777
Q ss_pred cCeEEEEccCceeeecCCC
Q 042733 203 FDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 203 ~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++..+.+ |++...+..
T Consensus 159 ~~~~~~v~~-~~~~~~~~~ 176 (216)
T cd03284 159 EGKLPRVKN-FHVAVKEKG 176 (216)
T ss_pred hhcCCCeEE-EEEEEEeeC
Confidence 887766665 787766654
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.25 E-value=5e-12 Score=119.94 Aligned_cols=65 Identities=14% Similarity=0.138 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHHc-CCeEEEEecCCchHHHhccCe
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVI-RMVRNTVDM-GRTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~-~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~ 205 (531)
+|++|++-+...+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||+++ +...+|+
T Consensus 64 ~~~~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~--l~~~~~~ 130 (185)
T smart00534 64 VEMKETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE--LTKLADE 130 (185)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHHHhhc
Confidence 4555544444444599999999999999999887765 556777764 899999999974 5666664
No 419
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.25 E-value=2.3e-11 Score=117.94 Aligned_cols=120 Identities=13% Similarity=0.168 Sum_probs=79.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhCC--CCCceEEEEEEEcCcccchhhhcceEEEEecCCCCC-CCCcHHhHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGR--KPGGYITRNITVSGYPEKQETFARILGYCEQNDIHS-PHDTLYDFTHCLYMFIEE 123 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~--~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~-~~ltv~e~~~~~~~~~~~ 123 (531)
.+....||||+|||||||.++.. ... .|.... +. .-.++|..|..... ...++.+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~---~G~~v~-a~-------~~~~~~~d~i~~~l~~~~si~~----------- 87 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAH---IGSFVP-AD-------SATIGLVDKIFTRMSSRESVSS----------- 87 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHh---CCCeeE-cC-------CcEEeeeeeeeeeeCCccChhh-----------
Confidence 45678899999999999999842 110 111111 10 12356666643221 1112211
Q ss_pred HHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHHc---CCeEEEEecCCch
Q 042733 124 GMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTV-IRMVRNTVDM---GRTVVCTIHQPSI 197 (531)
Q Consensus 124 ~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i-~~~L~~l~~~---g~tvi~~~H~~~~ 197 (531)
++ .+..-|.||++++++++.+|+++++|||++|+|+.....+ ...++++.+. +.++|++||+++.
T Consensus 88 -----~~----S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l 156 (213)
T cd03281 88 -----GQ----SAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHEL 156 (213)
T ss_pred -----cc----chHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHH
Confidence 11 1222578999999999999999999999999999765554 5688888764 3489999999753
No 420
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.16 E-value=1.1e-10 Score=119.55 Aligned_cols=148 Identities=19% Similarity=0.259 Sum_probs=108.5
Q ss_pred EEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHH-------HHHHHH
Q 042733 50 GAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHC-------LYMFIE 122 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~-------~~~~~~ 122 (531)
-.++.||.|||||+++++|+.++. ..|++-. -.++|=||.-.--..-||++..+. ..+.+.
T Consensus 371 vmlgEngtgkTTfi~mlag~~~pd-~~~e~p~-----------lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~ 438 (592)
T KOG0063|consen 371 VMLGENGTGKTTFIRMLAGRLKPD-EGGEIPV-----------LNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVN 438 (592)
T ss_pred EEEccCCcchhHHHHHHhcCCCCC-ccCcccc-----------cceeccccccCccccchHHHHHHHHhHhhhcCHHHHH
Confidence 445666999999999999975532 1122211 125566665433345577776221 234577
Q ss_pred HHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCeEEEEecCCc
Q 042733 123 EGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTV-DMGRTVVCTIHQPS 196 (531)
Q Consensus 123 ~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~ 196 (531)
++++.+.+++..|..+ ||+|||++|..|-..+++.+.|||.+-||+..+..--+.+++.. +.++|-.++.||.-
T Consensus 439 dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfI 518 (592)
T KOG0063|consen 439 DVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFI 518 (592)
T ss_pred hhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHH
Confidence 8888888887776665 89999999999999999999999999999999998888888754 56899999999854
Q ss_pred hHHHhccCeEEEEc
Q 042733 197 IDIFYSFDELFLLK 210 (531)
Q Consensus 197 ~~i~~~~d~v~lL~ 210 (531)
.+ -.++|||++..
T Consensus 519 ma-TYladrvivf~ 531 (592)
T KOG0063|consen 519 MA-TYLADRVIVFE 531 (592)
T ss_pred HH-HhhcceeEEEe
Confidence 32 23678888774
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.10 E-value=2.1e-10 Score=111.60 Aligned_cols=86 Identities=17% Similarity=0.259 Sum_probs=62.6
Q ss_pred HHHHHHhcCCchhhhccHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 121 IEEGMELVELNPFRQALFEQRKRLTVAVEFV----ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 121 ~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~----~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
+.+.++..++... ..+.|||.+++||.-|+ .+.++++||||.++||...+..+.++|+++.+ +.-+|++||++
T Consensus 123 ~~~~l~~~~i~~~-~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~ii~Th~~- 199 (220)
T PF02463_consen 123 LEELLPEVGISPE-FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQFIITTHNP- 199 (220)
T ss_dssp HHHHHHCTTTTTT-GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEEEEE-S-H-
T ss_pred ccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-
Confidence 4555666555443 44559999999997664 47789999999999999999999999998864 46799999985
Q ss_pred hHHHhccCeEEEEc
Q 042733 197 IDIFYSFDELFLLK 210 (531)
Q Consensus 197 ~~i~~~~d~v~lL~ 210 (531)
+.+..+|+.+.+.
T Consensus 200 -~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 200 -EMFEDADKLIGVT 212 (220)
T ss_dssp -HHHTT-SEEEEEE
T ss_pred -ccccccccccccc
Confidence 4688889887664
No 422
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.04 E-value=4.4e-10 Score=124.33 Aligned_cols=70 Identities=19% Similarity=0.331 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 139 EQRKRLTVAVEFVAN----PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 139 GerqRv~iA~aL~~~----p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
||+||++||++++.. |+++++||||+|||+.++..+.+.|+++++ +++||++||+|. +...+|+++++.+
T Consensus 444 Ge~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l~k 517 (563)
T TIGR00634 444 GELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKVEK 517 (563)
T ss_pred hHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEEEE
Confidence 899999999999985 699999999999999999999999999874 899999999975 4468999999985
No 423
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.03 E-value=5.1e-10 Score=124.08 Aligned_cols=73 Identities=19% Similarity=0.349 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHh----------hCCCeEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEE
Q 042733 139 EQRKRLTVAVEFV----------ANPSIISRDEPI-SGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELF 207 (531)
Q Consensus 139 GerqRv~iA~aL~----------~~p~lllLDEPt-sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~ 207 (531)
|||||++||++|+ .+|++++||||| ++||+.+...+.+.|+++ .|.|||++||++. ....+|+++
T Consensus 472 Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~~~~d~~~ 547 (562)
T PHA02562 472 GEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DPQKFDRHL 547 (562)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--chhhhhcEE
Confidence 9999999999887 599999999998 789999999999999988 5889999999965 456789999
Q ss_pred EEccCcee
Q 042733 208 LLKQVGQE 215 (531)
Q Consensus 208 lL~~~G~~ 215 (531)
.|.+.|+.
T Consensus 548 ~l~~~~~~ 555 (562)
T PHA02562 548 KMEKVGRF 555 (562)
T ss_pred EEEEECCe
Confidence 99864443
No 424
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.02 E-value=4e-10 Score=127.94 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHHcCCeEEEEecCCchHH
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTV-IRMVRNTVDMGRTVVCTIHQPSIDI 199 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i-~~~L~~l~~~g~tvi~~~H~~~~~i 199 (531)
|+++++.|++.+ .+|+++++|||++|+|+.....+ ..+++.+.+.|.++|++||+.+...
T Consensus 389 ~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 389 HMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred HHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 788888887766 79999999999999999999998 5678888778999999999976433
No 425
>PRK10869 recombination and repair protein; Provisional
Probab=98.98 E-value=1.2e-09 Score=120.06 Aligned_cols=70 Identities=19% Similarity=0.359 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 139 EQRKRLTVAVEFVA----NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 139 GerqRv~iA~aL~~----~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+||++||+|. +...+|+.+.+.+
T Consensus 434 Ge~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v~k 507 (553)
T PRK10869 434 GELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFVSK 507 (553)
T ss_pred HHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEEec
Confidence 89999999999997 5899999999999999999999999999964 689999999985 4578999999975
No 426
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=98.98 E-value=2.7e-09 Score=102.92 Aligned_cols=117 Identities=9% Similarity=-0.152 Sum_probs=101.0
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042733 372 SAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFY 451 (531)
Q Consensus 372 ~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~A~~~~~~~~ 451 (531)
+++.++++|.+..++..+++++++..+.|++.|+++. +++.+++.+++..++..+++.++++++++...+. +..++
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHHH
Confidence 4567899999999999999999999999999999864 5778888888899999999999999999775444 44455
Q ss_pred HHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhccC
Q 042733 452 TIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFLH 492 (531)
Q Consensus 452 ~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~~ 492 (531)
.+.++++|.+.|.+.||.|+ |+. ++|.+|+.+++-...+++
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~ 176 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGG 176 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCC
Confidence 67777899999999999999 999 999999999998877754
No 427
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.98 E-value=7.3e-10 Score=107.40 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 042733 140 QRKRLTVAVEFVANPSIISRDEPI-----SGLDARAATTVIRMVRNTVD 183 (531)
Q Consensus 140 erqRv~iA~aL~~~p~lllLDEPt-----sgLD~~~~~~i~~~L~~l~~ 183 (531)
|++++.||++++.+|+++++|||| +|||+.+++.+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 889999999999999999999999 99999999999999999864
No 428
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.95 E-value=2e-09 Score=127.28 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEE
Q 042733 138 FEQRKRLTVAVEFVA----------NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELF 207 (531)
Q Consensus 138 ~GerqRv~iA~aL~~----------~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~ 207 (531)
.||++||+||++|+. +|++||+||||+|||+.+...+++.|+.+.+.|++|+++||++.. ....+|+|.
T Consensus 953 gGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~-~~~~~~~i~ 1031 (1042)
T TIGR00618 953 GGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEF-RERIPHRIL 1031 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH-HHhhCCEEE
Confidence 399999999999986 799999999999999999999999999998889999999999873 667889999
Q ss_pred EEcc
Q 042733 208 LLKQ 211 (531)
Q Consensus 208 lL~~ 211 (531)
+++.
T Consensus 1032 v~~~ 1035 (1042)
T TIGR00618 1032 VKKT 1035 (1042)
T ss_pred EEEC
Confidence 9964
No 429
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.95 E-value=1.1e-08 Score=99.71 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=80.6
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCC---CCCceEEEEEEEcCcccchhhhcceEEEEecCCCC
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGR---KPGGYITRNITVSGYPEKQETFARILGYCEQNDIH 104 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~---~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~ 104 (531)
....|+++.... .++....||||+||||++|++++. ... |.. +-+....-..+.+...-+..+|.+
T Consensus 19 ~v~n~i~~~~~~------g~~~~itG~N~~GKStll~~i~~~~~la~~----G~~-v~a~~~~~~~~~~i~~~~~~~d~~ 87 (222)
T cd03287 19 FVPNDIHLSAEG------GYCQIITGPNMGGKSSYIRQVALITIMAQI----GSF-VPASSATLSIFDSVLTRMGASDSI 87 (222)
T ss_pred EEEEeEEEEecC------CcEEEEECCCCCCHHHHHHHHHHHHHHHhC----CCE-EEcCceEEeccceEEEEecCcccc
Confidence 346677766532 245678889999999999999992 222 221 111111101112222222222222
Q ss_pred CCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHH
Q 042733 105 SPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTV-IRMVRNTVD 183 (531)
Q Consensus 105 ~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i-~~~L~~l~~ 183 (531)
...++ +...|-+|++-...-+.+|+++++|||.+|.|+.....+ ...++.+.+
T Consensus 88 ~~~~S--------------------------tF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~ 141 (222)
T cd03287 88 QHGMS--------------------------TFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLE 141 (222)
T ss_pred ccccc--------------------------hHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh
Confidence 11111 111355566666666789999999999999997777764 567777777
Q ss_pred c-CCeEEEEecCCch
Q 042733 184 M-GRTVVCTIHQPSI 197 (531)
Q Consensus 184 ~-g~tvi~~~H~~~~ 197 (531)
. +.++|++||+++.
T Consensus 142 ~~~~~~i~~TH~~~l 156 (222)
T cd03287 142 EKKCLVLFVTHYPSL 156 (222)
T ss_pred ccCCeEEEEcccHHH
Confidence 6 8899999999764
No 430
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.95 E-value=5.8e-09 Score=102.58 Aligned_cols=120 Identities=8% Similarity=-0.145 Sum_probs=104.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 042733 370 TYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSS 449 (531)
Q Consensus 370 ~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~A~~~~~~ 449 (531)
=-++..|+++|.+.+++..+++.+++.++.|++.+++. ..++.+++..++..++..++|.++++.+++.+.+..+.+.
T Consensus 86 P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~ 163 (236)
T TIGR01247 86 PASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSM 163 (236)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33678999999999999999999999999998877654 3466666666677788899999999999999999999999
Q ss_pred HHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhcc
Q 042733 450 FYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFL 491 (531)
Q Consensus 450 ~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~ 491 (531)
+..++..++|.+.|.+.||.|+ |+. ++|++|+.|++-..-.+
T Consensus 164 ~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~ 207 (236)
T TIGR01247 164 LMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAG 207 (236)
T ss_pred HHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhC
Confidence 9999999999999999999999 999 99999999997655444
No 431
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.91 E-value=2.8e-09 Score=109.43 Aligned_cols=162 Identities=20% Similarity=0.210 Sum_probs=105.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCc---eEEEEEEEc------Cccc-------chhhhcceEEEEecCCCCCC---
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGG---YITRNITVS------GYPE-------KQETFARILGYCEQNDIHSP--- 106 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g---~~~G~i~~~------g~~~-------~~~~~~~~igyv~Q~~~~~~--- 106 (531)
.+|-|.+|.||-||||-+|+++|+.++. ...+..+-+ |... .+..++. -.=+|.-..+|
T Consensus 100 g~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~--~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 100 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKA--IIKPQYVDQIPRAV 177 (592)
T ss_pred chhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccC--cCChHHHHHHHHHH
Confidence 4667888999999999999999975431 111110000 0000 0000000 00111111111
Q ss_pred CCcHHhHHH--HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 042733 107 HDTLYDFTH--CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVR 179 (531)
Q Consensus 107 ~ltv~e~~~--~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~ 179 (531)
..+|.+... ..+...+++++.+.|.+..++-+ ||-||.+||++.+++.++.++|||.+-||...+..-...++
T Consensus 178 k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IR 257 (592)
T KOG0063|consen 178 KGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIR 257 (592)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHH
Confidence 123333311 11234566777777776665544 89999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 180 NTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 180 ~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
.+....+=||++.||.+. .-.+.|-+..|.
T Consensus 258 sl~~p~~YiIVVEHDLsV-LDylSDFiCcLY 287 (592)
T KOG0063|consen 258 SLINPDRYIIVVEHDLSV-LDYLSDFICCLY 287 (592)
T ss_pred HhhCCCCeEEEEEeechH-HHhhhcceeEEe
Confidence 998878889999999873 333568888775
No 432
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.88 E-value=1e-08 Score=94.91 Aligned_cols=154 Identities=15% Similarity=0.259 Sum_probs=88.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhCC---CCCc---eEEEEEEEcCcccchh---hhcc--eEEEEecCCCCCCCCcHHhHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGR---KPGG---YITRNITVSGYPEKQE---TFAR--ILGYCEQNDIHSPHDTLYDFTH 115 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~---~~~g---~~~G~i~~~g~~~~~~---~~~~--~igyv~Q~~~~~~~ltv~e~~~ 115 (531)
.|++.+|.||+||||||..|+-. ...| ...|++...+.+.... .+++ ..||-.-- .|+...
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRA------Es~yn~-- 109 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRA------ESFYNV-- 109 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEeh------hHHHHH--
Confidence 58999999999999999999752 2222 1123333322221110 0111 13333221 222221
Q ss_pred HHHHHHHHHHHhc--CCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEec
Q 042733 116 CLYMFIEEGMELV--ELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193 (531)
Q Consensus 116 ~~~~~~~~~l~~l--~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H 193 (531)
...+++..... +...+.+.+-||-= ++|-.-=..+.-+.+||||-++|.|.-+.+++..|+++++.|.-+|++||
T Consensus 110 --as~~De~~~e~~~~~~sLh~~SHGEsf-~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATH 186 (233)
T COG3910 110 --ASYLDEADGEANYGGRSLHHMSHGESF-LAIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATH 186 (233)
T ss_pred --HHHHHhhhhhcccCCcchhhhccchHH-HHHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 11233333222 22233333336532 22222235678899999999999999999999999999999999999999
Q ss_pred CCchHHHhccCeEEEEccC
Q 042733 194 QPSIDIFYSFDELFLLKQV 212 (531)
Q Consensus 194 ~~~~~i~~~~d~v~lL~~~ 212 (531)
.|-.- .----.+.-++++
T Consensus 187 SPiLl-AiP~A~I~~~~~~ 204 (233)
T COG3910 187 SPILL-AIPGAEIYEISES 204 (233)
T ss_pred Chhhe-eCCCcEEEEEecC
Confidence 87421 1112355555543
No 433
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.83 E-value=6.4e-08 Score=95.06 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=44.6
Q ss_pred hCCCeEEEeCCCCCC----CHHHHHHHHHHHHHHHHcCCeEEEEecCCchH------HHhccCeEEEEc
Q 042733 152 ANPSIISRDEPISGL----DARAATTVIRMVRNTVDMGRTVVCTIHQPSID------IFYSFDELFLLK 210 (531)
Q Consensus 152 ~~p~lllLDEPtsgL----D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~------i~~~~d~v~lL~ 210 (531)
.+|+++++||||+++ |+...+.+.+.++.++++|.|+++++|+.... +...+|-++.|.
T Consensus 116 ~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 116 YEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred cCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 479999999999999 88888999999999988888877766543210 123457777775
No 434
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.80 E-value=6.2e-09 Score=118.65 Aligned_cols=76 Identities=11% Similarity=0.080 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeee
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR-MVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS 217 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~ 217 (531)
|++|++.|++++ .+|+++++|||++|+|+.....+.. ++..+.+.|.++|++||+++. ....+|+..+.+ +.+.+
T Consensus 394 ~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~~--~~~~~ 469 (782)
T PRK00409 394 HMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKEL-KALMYNREGVEN--ASVEF 469 (782)
T ss_pred HHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeEE--EEEEE
Confidence 799999999988 8999999999999999999988865 677777779999999999653 223345554443 45555
Q ss_pred c
Q 042733 218 V 218 (531)
Q Consensus 218 ~ 218 (531)
.
T Consensus 470 d 470 (782)
T PRK00409 470 D 470 (782)
T ss_pred e
Confidence 3
No 435
>PRK03918 chromosome segregation protein; Provisional
Probab=98.79 E-value=1.3e-08 Score=118.89 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=63.2
Q ss_pred HHHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 138 FEQRK------RLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 138 ~Gerq------Rv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
.|||+ |+++|++++.+|+++++||||+|||+..+..+.+.|..+++.+.+||++||++. +...||+++.|..
T Consensus 791 ~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d~~~~l~~ 868 (880)
T PRK03918 791 GGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAADYVIRVSL 868 (880)
T ss_pred HhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCCeEEEEEe
Confidence 38999 555666788999999999999999999999999999998777889999999964 5678999999974
No 436
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=98.77 E-value=5.8e-08 Score=95.35 Aligned_cols=128 Identities=11% Similarity=0.047 Sum_probs=96.1
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhCC--
Q 042733 361 IFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSA-- 438 (531)
Q Consensus 361 v~~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~-- 438 (531)
.+.|=+..-. ++..|+++|.+..++..+++.+++. +++++.|++..... +..++.+.+....+.+++.+++++++
T Consensus 67 ~l~rl~~~P~-~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 143 (232)
T TIGR00025 67 ALKRLGATPL-PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGA-LTALTLGAVIIALGTALFAALGLVAGGT 143 (232)
T ss_pred HHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5555554444 7899999999988888877765555 55677898865433 33344444555566667777777764
Q ss_pred -CHHHHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhcc
Q 042733 439 -KPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFL 491 (531)
Q Consensus 439 -~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~ 491 (531)
+.+.+..++.+...++.++||.+.|.+.||.|+ |+. ++|++|+.+++-.--.+
T Consensus 144 ~~~~~~~~i~~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~ 199 (232)
T TIGR00025 144 LQAEIVLAVANLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATV 199 (232)
T ss_pred ccHHHHHHHHHHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcC
Confidence 555568889999999999999999999999999 999 99999999987655333
No 437
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.74 E-value=2.9e-08 Score=93.70 Aligned_cols=69 Identities=17% Similarity=0.105 Sum_probs=56.1
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCeEEEEecCCch--------HHHhccCeEEEEcc
Q 042733 143 RLTVAVEFVANPSIISRDEPISGLD---ARAATTVIRMVRNTVDMGRTVVCTIHQPSI--------DIFYSFDELFLLKQ 211 (531)
Q Consensus 143 Rv~iA~aL~~~p~lllLDEPtsgLD---~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~--------~i~~~~d~v~lL~~ 211 (531)
+.........+|+++++|||++.+| ...+..+.+.++.+++.|.|+|+++|+... .+...+|.++.|..
T Consensus 85 ~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 85 QRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred HHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEEE
Confidence 4444555667999999999999999 888888889999988889999999998653 14567899998863
No 438
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.74 E-value=1.8e-08 Score=91.98 Aligned_cols=59 Identities=17% Similarity=0.154 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHHHcCCeEEEEecCCch
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPIS----------GLDARAATTVIRMVRNTVDMGRTVVCTIHQPSI 197 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPts----------gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 197 (531)
++.++...+++...+|+++++||+++ +.|....+.+.++.....+.+.|+|+++|.+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 71 ARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 44556778888889999999999994 555555666666666655569999999998754
No 439
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.72 E-value=6.3e-08 Score=94.14 Aligned_cols=59 Identities=12% Similarity=0.096 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHHc-CCeEEEEecCCch
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRM-VRNTVDM-GRTVVCTIHQPSI 197 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~-L~~l~~~-g~tvi~~~H~~~~ 197 (531)
.|-+|++-....+.+|+++++|||.+|+|+.....+... ++.+.+. +.++|++||+++.
T Consensus 95 ~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el 155 (218)
T cd03286 95 VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSL 155 (218)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 355666666666789999999999999999999988887 7777765 8999999999753
No 440
>PRK01156 chromosome segregation protein; Provisional
Probab=98.71 E-value=6.8e-08 Score=112.96 Aligned_cols=73 Identities=18% Similarity=0.237 Sum_probs=62.0
Q ss_pred cHHHHHHHHH------HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-Hc-C-CeEEEEecCCchHHHhccCeEE
Q 042733 137 LFEQRKRLTV------AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTV-DM-G-RTVVCTIHQPSIDIFYSFDELF 207 (531)
Q Consensus 137 ~~GerqRv~i------A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~-~~-g-~tvi~~~H~~~~~i~~~~d~v~ 207 (531)
+.|||+|++| |++++.+|++++|||||+|||+..+..+.+.++... .. | .++|++||++. ....||+++
T Consensus 803 S~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~~d~ii 880 (895)
T PRK01156 803 SGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSVADVAY 880 (895)
T ss_pred CHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHhcCeEE
Confidence 3499999975 589999999999999999999999999999998644 33 3 48999999975 457899999
Q ss_pred EEcc
Q 042733 208 LLKQ 211 (531)
Q Consensus 208 lL~~ 211 (531)
.+..
T Consensus 881 ~~~~ 884 (895)
T PRK01156 881 EVKK 884 (895)
T ss_pred EEEe
Confidence 9974
No 441
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.68 E-value=7.6e-08 Score=92.35 Aligned_cols=122 Identities=17% Similarity=0.197 Sum_probs=73.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGM 125 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l 125 (531)
+++-+..||.||||||+++.|.+..... ..+.+.....+.. .......+++.|...-....
T Consensus 1 ~GlilI~GptGSGKTTll~~ll~~~~~~-~~~~i~t~e~~~E-~~~~~~~~~i~q~~vg~~~~----------------- 61 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLAAMIDYINKN-KTHHILTIEDPIE-FVHESKRSLINQREVGLDTL----------------- 61 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhhhc-CCcEEEEEcCCcc-ccccCccceeeecccCCCcc-----------------
Confidence 3567889999999999999998854321 1234444333321 11111223444422100000
Q ss_pred HhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCe
Q 042733 126 ELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 126 ~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~ 205 (531)
.+ .=+++++|..+|+++++|||. |..+...++ +.+..|..++.|+|.++. .+..||
T Consensus 62 ------~~---------~~~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~~--~~~~~R 117 (198)
T cd01131 62 ------SF---------ENALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNSA--AKTIDR 117 (198)
T ss_pred ------CH---------HHHHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCcH--HHHHhH
Confidence 00 114778899999999999996 655443333 345579999999999863 466788
Q ss_pred EEEEc
Q 042733 206 LFLLK 210 (531)
Q Consensus 206 v~lL~ 210 (531)
++.+.
T Consensus 118 l~~l~ 122 (198)
T cd01131 118 IIDVF 122 (198)
T ss_pred HHhhc
Confidence 76654
No 442
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.68 E-value=5.5e-08 Score=114.89 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=55.9
Q ss_pred cHHHHHHHHHHHHHhh--------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 137 LFEQRKRLTVAVEFVA--------NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 137 ~~GerqRv~iA~aL~~--------~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
+.||++|++||++|+. +|++||+||||+|||+.+...+++.|..+++.|+||+++||...
T Consensus 951 SgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~ 1018 (1047)
T PRK10246 951 SGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA 1018 (1047)
T ss_pred CHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH
Confidence 3499999999999996 89999999999999999999999999999888999999999643
No 443
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.65 E-value=8.5e-08 Score=105.66 Aligned_cols=83 Identities=20% Similarity=0.340 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc-----c
Q 042733 139 EQRKRLTVAVEFVANP--SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK-----Q 211 (531)
Q Consensus 139 GerqRv~iA~aL~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~-----~ 211 (531)
||.||+-+|..+-.+= =+.+||||+.||-+..-.++++.|++|++.|.|+|++.||++ ....+|+++=+- .
T Consensus 485 GEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed--ti~~AD~iIDiGPgAG~~ 562 (935)
T COG0178 485 GEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED--TIRAADHIIDIGPGAGEH 562 (935)
T ss_pred hHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH--HHhhcCEEEeeCCCCCcC
Confidence 8999999999987653 357999999999999999999999999999999999999964 678899998763 4
Q ss_pred CceeeecCCCCC
Q 042733 212 VGQEISVGPLGP 223 (531)
Q Consensus 212 ~G~~v~~G~~~~ 223 (531)
||++++.|++++
T Consensus 563 GGeIv~~Gtp~~ 574 (935)
T COG0178 563 GGEIVAEGTPEE 574 (935)
T ss_pred CCEEEEccCHHH
Confidence 789999999864
No 444
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.63 E-value=6.9e-07 Score=95.31 Aligned_cols=154 Identities=19% Similarity=0.166 Sum_probs=93.4
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc-----------hhhhcceEEEEecCCCCCCCCcHHhHHHHH
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK-----------QETFARILGYCEQNDIHSPHDTLYDFTHCL 117 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~-----------~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~ 117 (531)
.+.++++|+|||||+++|+|..+. ..|.+.+.|.... ...+++.+.++.+.+... .. +......
T Consensus 161 i~I~G~sG~GKStLl~~I~~~~~~--~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~-~~--r~~~~~~ 235 (438)
T PRK07721 161 VGIFAGSGVGKSTLMGMIARNTSA--DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPA-LM--RIKGAYT 235 (438)
T ss_pred EEEECCCCCCHHHHHHHHhcccCC--CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCH-HH--HHHHHHH
Confidence 344455599999999999997654 3577777554321 122567788888754321 00 1100111
Q ss_pred HHHHHHHHHhcCCch--hhhccH--HHHHH-HHHHHHHhhCCCeEEEeCC--CCCCCHHHHHHHHHHHHHHHH--cCC--
Q 042733 118 YMFIEEGMELVELNP--FRQALF--EQRKR-LTVAVEFVANPSIISRDEP--ISGLDARAATTVIRMVRNTVD--MGR-- 186 (531)
Q Consensus 118 ~~~~~~~l~~l~l~~--~~~~~~--GerqR-v~iA~aL~~~p~lllLDEP--tsgLD~~~~~~i~~~L~~l~~--~g~-- 186 (531)
...+.|....-|.+- ..|..- -+-+| ++++ +.|| |+|+||.....+.++++++.+ +|.
T Consensus 236 a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~-----------~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT 304 (438)
T PRK07721 236 ATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLA-----------VGEPPTTKGYTPSVFAILPKLLERTGTNASGSIT 304 (438)
T ss_pred HHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHh-----------cCCCCccccCCHHHHHHHHHHHHHhcCCCCCCee
Confidence 111222222222110 001100 12222 2222 2454 789999999999999999874 575
Q ss_pred ---eEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 187 ---TVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 187 ---tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||++.+||.+. ..||++..+.+ |+++..+...
T Consensus 305 ~~~TVlv~~hdm~e---~i~d~v~~i~d-G~Ivls~~la 339 (438)
T PRK07721 305 AFYTVLVDGDDMNE---PIADTVRGILD-GHFVLDRQLA 339 (438)
T ss_pred eEEEEEEECCCCCc---hhhhhEEEecC-EEEEEeccHH
Confidence 99999999873 67999999996 9999998753
No 445
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.62 E-value=1.7e-07 Score=96.16 Aligned_cols=132 Identities=17% Similarity=0.095 Sum_probs=82.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCC-CCCCCcHHhHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDI-HSPHDTLYDFTHCLYMFIEEGM 125 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~-~~~~ltv~e~~~~~~~~~~~~l 125 (531)
..-+..||+|||||||+++|++..+.. .+.+.+.....-....+..+.+..+... -....+.
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~~--~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~--------------- 207 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPKD--ERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTP--------------- 207 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCcc--ccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCH---------------
Confidence 356778899999999999999976532 3445554321100011233333332210 0001111
Q ss_pred HhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCe
Q 042733 126 ELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 126 ~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~ 205 (531)
.-.++.+|-.+|+++++|||.+ .+.++.++.+...+.+++.|+|..+ ..+..||
T Consensus 208 -----------------~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~R 261 (308)
T TIGR02788 208 -----------------KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGS--PEEAFEQ 261 (308)
T ss_pred -----------------HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCC--HHHHHHH
Confidence 1235567888999999999996 3456677766543446799999987 4556899
Q ss_pred EEEEccCceeeecCCCC
Q 042733 206 LFLLKQVGQEISVGPLG 222 (531)
Q Consensus 206 v~lL~~~G~~v~~G~~~ 222 (531)
+..+.. |++...|.+.
T Consensus 262 l~~l~~-~~~~~~g~~~ 277 (308)
T TIGR02788 262 LALMVK-SSQAGLGLDF 277 (308)
T ss_pred HHHHhh-ccccccCCCH
Confidence 998875 7787777653
No 446
>PRK13695 putative NTPase; Provisional
Probab=98.62 E-value=1.8e-08 Score=94.56 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceee
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEP--ISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI 216 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEP--tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v 216 (531)
+++.+..+++..+.+|+++++||| +.++|+. +.+.+.++.+.|.++|+++|+. .+...+|++..+.+ |++.
T Consensus 82 le~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~-~~i~ 154 (174)
T PRK13695 82 LERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG-GRVY 154 (174)
T ss_pred HHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC-cEEE
Confidence 688888888888899999999995 4455533 4566666666789999999984 34567899999986 8887
Q ss_pred ecC
Q 042733 217 SVG 219 (531)
Q Consensus 217 ~~G 219 (531)
..-
T Consensus 155 ~~~ 157 (174)
T PRK13695 155 ELT 157 (174)
T ss_pred EEc
Confidence 663
No 447
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.61 E-value=7e-08 Score=95.65 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH-HHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 141 RKRLTVAVEFVANPSIISRDEPISGLDARAATT-VIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 141 rqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~-i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
+||+++|+++..+++|.+| ||+.+|+.+... ++ +..+...+.|.|+.+|+.. ....+|.|.+|+. |+.
T Consensus 143 ~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~paI~vl~s-~sr 211 (249)
T cd01128 143 KRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIFPAIDILKS-GTR 211 (249)
T ss_pred HHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCCCeEEEcCC-CCc
Confidence 9999999999999999999 999999655543 44 4555546789999999865 3567999999986 775
No 448
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=98.60 E-value=8.8e-07 Score=88.14 Aligned_cols=117 Identities=9% Similarity=-0.140 Sum_probs=93.6
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 042733 371 YSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSF 450 (531)
Q Consensus 371 Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~A~~~~~~~ 450 (531)
.++..+.+++.+..+-..+++.+++.++.+. .|.+.....++.....+++..++..++|.++++++++.+.+..+.+++
T Consensus 99 ~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~lgl~la~l~~~~~~~~~i~~~~ 177 (253)
T TIGR03861 99 LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGALGLALSNLIRQLENFAGVMNFV 177 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3777899999999988777776665544433 377665555555555556677788899999999999999999999999
Q ss_pred HHHHHHhcccccCCCCC---CceE-EEE-ecchHHHHHHHHHh
Q 042733 451 YTIWNLFPGFVIPRPFV---DNGE-FQY-GADGLLGISGILDL 488 (531)
Q Consensus 451 ~~~~~lf~Gf~i~~~~i---p~~~-W~~-isp~~y~~~~l~~n 488 (531)
+.+++..+|.+.|.+.+ |.|+ |+. +||+.|..|++=..
T Consensus 178 ~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~ 220 (253)
T TIGR03861 178 IFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA 220 (253)
T ss_pred HHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH
Confidence 99999999999998766 7788 998 99999999987543
No 449
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.59 E-value=6.7e-08 Score=116.87 Aligned_cols=66 Identities=21% Similarity=0.266 Sum_probs=57.0
Q ss_pred ccHHHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCeEEEEecCCchHHHhc
Q 042733 136 ALFEQRK------RLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-----MGRTVVCTIHQPSIDIFYS 202 (531)
Q Consensus 136 ~~~Gerq------Rv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tvi~~~H~~~~~i~~~ 202 (531)
.+.|||| |++||++++.+|++|+|||||+|||+.+...+.+.|..+.. .|.+||++||++. .+..+
T Consensus 1200 lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~~ 1276 (1311)
T TIGR00606 1200 CSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVELL 1276 (1311)
T ss_pred CchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHHH
Confidence 3449999 99999999999999999999999999999999999988732 3789999999976 34444
No 450
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.57 E-value=2.2e-07 Score=91.70 Aligned_cols=131 Identities=22% Similarity=0.280 Sum_probs=77.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcC--cccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSG--YPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEG 124 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g--~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~ 124 (531)
.++..++|+|+|||||+-.++=....|. .+.| ... .-...+-|+.-++. ......++..+
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~-----~~~g~~~~~---~~~~~Vlyi~~Ed~----------~~~i~~Rl~~i 63 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGK-----NLFGGGLKV---TEPGRVVYLSAEDP----------REEIHRRLEAI 63 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCc-----cccCCcccc---CCCceEEEEECCCC----------HHHHHHHHHHH
Confidence 4688999999999999988864221110 0111 110 01223445443321 11223344444
Q ss_pred HHhcCCchhhhccH---HHHHHHHHHH----------------HHhhCCCeEEEeCCCC------CCCHHHHHHHHHHHH
Q 042733 125 MELVELNPFRQALF---EQRKRLTVAV----------------EFVANPSIISRDEPIS------GLDARAATTVIRMVR 179 (531)
Q Consensus 125 l~~l~l~~~~~~~~---GerqRv~iA~----------------aL~~~p~lllLDEPts------gLD~~~~~~i~~~L~ 179 (531)
...+++.+..++.. |+.|++.+++ ....+|+++++| |++ .+|+.....+++.|+
T Consensus 64 ~~~~~~~~~~~rl~~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~ 142 (239)
T cd01125 64 LQHLEPDDAGDRLFIDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALR 142 (239)
T ss_pred HhhcCCcCcccceEEeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHH
Confidence 44444333222221 4444444332 335799999999 765 479999999999999
Q ss_pred HHHHc-CCeEEEEecCCc
Q 042733 180 NTVDM-GRTVVCTIHQPS 196 (531)
Q Consensus 180 ~l~~~-g~tvi~~~H~~~ 196 (531)
+++++ |.+|++++|...
T Consensus 143 ~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 143 RIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHHHHhCCEEEEEeccCc
Confidence 98865 999999999753
No 451
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=98.55 E-value=4.8e-07 Score=90.15 Aligned_cols=118 Identities=13% Similarity=0.028 Sum_probs=95.4
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042733 372 SAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFY 451 (531)
Q Consensus 372 ~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~A~~~~~~~~ 451 (531)
++..+.+||.+.+.-..+++.++...+.++ .|..+. ...+..+.++++..++..++|.++++++++.+.+..+..++.
T Consensus 100 ~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~~~~~~~~~~~i~~~i~ 177 (253)
T TIGR01291 100 TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVAALAPSYAYFAFYQSLVI 177 (253)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 677899999999877777776665555443 455443 345555556666778888999999999999999999999999
Q ss_pred HHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhcc
Q 042733 452 TIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFL 491 (531)
Q Consensus 452 ~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~ 491 (531)
.+++.++|.+.|.+.||.|+ |+. ++|+.|+.|++=..-++
T Consensus 178 ~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g 219 (253)
T TIGR01291 178 TPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLG 219 (253)
T ss_pred HHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhC
Confidence 99999999999999999999 888 99999999997655444
No 452
>PRK00064 recF recombination protein F; Reviewed
Probab=98.52 E-value=2.6e-07 Score=96.80 Aligned_cols=72 Identities=22% Similarity=0.337 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhcc--CeEE
Q 042733 139 EQRKRLTVAVEFV---------ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSF--DELF 207 (531)
Q Consensus 139 GerqRv~iA~aL~---------~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~--d~v~ 207 (531)
||||++.+|+.|+ .+|++++||||+++||+..+..+++.+.++ +..+++++|++. .+...+ +++.
T Consensus 277 Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~~~~~i~ 352 (361)
T PRK00064 277 GQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLLENAKIF 352 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhhccCcEE
Confidence 8999999999886 799999999999999999999999988754 457899999865 333443 4788
Q ss_pred EEccCcee
Q 042733 208 LLKQVGQE 215 (531)
Q Consensus 208 lL~~~G~~ 215 (531)
.+.+ |++
T Consensus 353 ~v~~-G~i 359 (361)
T PRK00064 353 HVEQ-GKI 359 (361)
T ss_pred EEeC-CEE
Confidence 8875 775
No 453
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.50 E-value=1.4e-07 Score=113.00 Aligned_cols=70 Identities=13% Similarity=0.174 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 139 EQRKRLTVAVEFV----ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 139 GerqRv~iA~aL~----~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
|||+|++||++++ .+|++++|||||+|||+..+..+.++|+.+++ +.++|++||++.. ...||+++.+..
T Consensus 1093 g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~~~~~~ 1166 (1179)
T TIGR02168 1093 GEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQLYGVTM 1166 (1179)
T ss_pred cHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhHeeeee
Confidence 9999999999985 67799999999999999999999999999865 4789999999763 567999987653
No 454
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.43 E-value=1.8e-06 Score=79.31 Aligned_cols=128 Identities=10% Similarity=-0.057 Sum_probs=94.9
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChh--HHHHHHHHHHHHHHHHHHHHHHH
Q 042733 356 AVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAA--MFFWYLLLMLFIFFYFTFYGMMA 433 (531)
Q Consensus 356 ~~er~v~~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~--~f~~f~l~~~l~~~~~~~~~~~i 433 (531)
..|+-.+.|-+..-. +++.|+++|.+...-..+++.++..++.++ .|.+...+ .++.++++..+.......++..+
T Consensus 15 dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~ 92 (152)
T TIGR01248 15 DREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAM 92 (152)
T ss_pred HHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777766 799999999999999998888877777754 48887632 23333333344455556666666
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHH
Q 042733 434 EALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGIL 486 (531)
Q Consensus 434 ~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~ 486 (531)
+...++.+..+ ...++..++.+.+|.+.|.++||.|+ |+- ++|++|+.+++=
T Consensus 93 a~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 93 ALRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 65566665444 45777788888999999999999999 998 999999999873
No 455
>PRK02224 chromosome segregation protein; Provisional
Probab=98.36 E-value=9.3e-07 Score=103.33 Aligned_cols=72 Identities=19% Similarity=0.300 Sum_probs=61.7
Q ss_pred HHHHH------HHHHHHHHhhC-----C-CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC-eEEEEecCCchHHHhccC
Q 042733 138 FEQRK------RLTVAVEFVAN-----P-SIISRDEPISGLDARAATTVIRMVRNTVDMGR-TVVCTIHQPSIDIFYSFD 204 (531)
Q Consensus 138 ~Gerq------Rv~iA~aL~~~-----p-~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~-tvi~~~H~~~~~i~~~~d 204 (531)
.|||+ |+++|++++.+ | +++++||||++||+.....+.+.|+.+.+.|. +||++||++. ....+|
T Consensus 784 ~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~~~~ad 861 (880)
T PRK02224 784 GGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--LVGAAD 861 (880)
T ss_pred ccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--HHHhcC
Confidence 38999 89999998864 3 67999999999999999999999999876664 7999999986 346799
Q ss_pred eEEEEcc
Q 042733 205 ELFLLKQ 211 (531)
Q Consensus 205 ~v~lL~~ 211 (531)
+++.+..
T Consensus 862 ~~~~~~~ 868 (880)
T PRK02224 862 DLVRVEK 868 (880)
T ss_pred eeEEeec
Confidence 9999964
No 456
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.35 E-value=7.1e-07 Score=93.54 Aligned_cols=55 Identities=20% Similarity=0.259 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhh---------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 139 EQRKRLTVAVEFVA---------NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 139 GerqRv~iA~aL~~---------~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
||||++.||..|+. +|+|++||||+++||+..+..+++.|++. |.+|++|+|+++
T Consensus 279 Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 279 GQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 89999999999999 99999999999999999999999999753 679999999865
No 457
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.30 E-value=3.3e-06 Score=83.04 Aligned_cols=72 Identities=22% Similarity=0.307 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhh--CCCeEEEeCCCCC---CCHHHHHHHHHHHHHHHHcCCeEEEEecCCchH------HHhccCeEE
Q 042733 139 EQRKRLTVAVEFVA--NPSIISRDEPISG---LDARAATTVIRMVRNTVDMGRTVVCTIHQPSID------IFYSFDELF 207 (531)
Q Consensus 139 GerqRv~iA~aL~~--~p~lllLDEPtsg---LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~------i~~~~d~v~ 207 (531)
++++.+.....++. +|+++++||||+. +|.....++++.++.++++|.|+++++|+.... +...+|-++
T Consensus 104 ~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI 183 (234)
T PRK06067 104 LANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYL 183 (234)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEE
Confidence 66788888888887 9999999999964 555555566666777777799999999986521 344567777
Q ss_pred EEc
Q 042733 208 LLK 210 (531)
Q Consensus 208 lL~ 210 (531)
.|.
T Consensus 184 ~L~ 186 (234)
T PRK06067 184 KLR 186 (234)
T ss_pred EEE
Confidence 665
No 458
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.29 E-value=1.2e-06 Score=105.22 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 139 EQRKRLTVAVEFVA----NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 139 GerqRv~iA~aL~~----~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
|||++++||++++. +|++++||||++|||+..+..+.++|+++++ +.++|++||++. ....||+++.+..
T Consensus 1078 ge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1078 GEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAIGVTM 1151 (1164)
T ss_pred chHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeEeEEE
Confidence 89999999999985 7899999999999999999999999998865 477999999974 5688999988764
No 459
>PRK14079 recF recombination protein F; Provisional
Probab=98.23 E-value=2.6e-06 Score=88.91 Aligned_cols=70 Identities=11% Similarity=0.228 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE
Q 042733 139 EQRKRLTVAVEFV---------ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL 209 (531)
Q Consensus 139 GerqRv~iA~aL~---------~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL 209 (531)
||||++.+|..|+ .+|++++||||+++||+..+..+.+.|... ..++|.+++.+ ..+|+++.+
T Consensus 267 Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~~~~~~ 338 (349)
T PRK14079 267 GEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAALTLRI 338 (349)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCceEEEE
Confidence 8999999999999 899999999999999999999999888643 23555555543 468999999
Q ss_pred ccCceeee
Q 042733 210 KQVGQEIS 217 (531)
Q Consensus 210 ~~~G~~v~ 217 (531)
.+ |++.-
T Consensus 339 ~~-~~~~~ 345 (349)
T PRK14079 339 EA-GVFTP 345 (349)
T ss_pred ec-cEecC
Confidence 86 77643
No 460
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.19 E-value=1.2e-05 Score=83.67 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=72.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGM 125 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l 125 (531)
+++-+..||.||||||++++|.+..+.. ..+.+.....+... ......+.+.|.+.-....+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~-~~~~i~tiEdp~E~-~~~~~~~~i~q~evg~~~~~---------------- 183 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKN-AAGHIITIEDPIEY-VHRNKRSLINQREVGLDTLS---------------- 183 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcC-CCCEEEEEcCChhh-hccCccceEEccccCCCCcC----------------
Confidence 3677888999999999999999853311 12344444333211 11111122222211000000
Q ss_pred HhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCe
Q 042733 126 ELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 126 ~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~ 205 (531)
-.-+++++|-.+|+++++||+. |+.+....++ .+..|.+|+.|+|-.+. ....+|
T Consensus 184 ----------------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~~--~~~~~R 238 (343)
T TIGR01420 184 ----------------FANALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNSA--AQTIER 238 (343)
T ss_pred ----------------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCCH--HHHHHH
Confidence 0123667888999999999997 8888765444 34569999999998663 455677
Q ss_pred EEEE
Q 042733 206 LFLL 209 (531)
Q Consensus 206 v~lL 209 (531)
++-+
T Consensus 239 l~~~ 242 (343)
T TIGR01420 239 IIDV 242 (343)
T ss_pred HHHh
Confidence 6544
No 461
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.14 E-value=5.4e-05 Score=66.22 Aligned_cols=55 Identities=27% Similarity=0.299 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH------HHHHHHHcCCeEEEEec
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR------MVRNTVDMGRTVVCTIH 193 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~------~L~~l~~~g~tvi~~~H 193 (531)
++..+..++++--.+|+++++||+..-.+......... ........+..+|+++|
T Consensus 64 ~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 34555666666666689999999999999988877664 12222334778888888
No 462
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.14 E-value=2.7e-06 Score=72.97 Aligned_cols=68 Identities=19% Similarity=0.089 Sum_probs=48.0
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceEEEEecCCCCC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARILGYCEQNDIHS 105 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~igyv~Q~~~~~ 105 (531)
.++++++.... .++...+||+|||||||++++. +|++.++|.+... ...++..++++|+ .
T Consensus 4 aL~~vsl~i~~------ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~---l 66 (107)
T cd00820 4 SLHGVLVDVYG------KVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL---G 66 (107)
T ss_pred EEEeeEEEEcC------CEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh---c
Confidence 56777777642 2456788888999999999997 3567888876532 3355667888877 3
Q ss_pred CCCcHHhH
Q 042733 106 PHDTLYDF 113 (531)
Q Consensus 106 ~~ltv~e~ 113 (531)
...|++|+
T Consensus 67 f~~ti~~N 74 (107)
T cd00820 67 LEIRLRLN 74 (107)
T ss_pred chhhHHhh
Confidence 44677765
No 463
>PRK15066 inner membrane transport permease; Provisional
Probab=98.14 E-value=1.9e-05 Score=78.82 Aligned_cols=118 Identities=8% Similarity=-0.052 Sum_probs=88.6
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 042733 371 YSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSF 450 (531)
Q Consensus 371 Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~A~~~~~~~ 450 (531)
.++..+.+++.+...-..++..++..++.+...|.+.. ....++..+++...+....|.+++.+.++.+.+..+.+++
T Consensus 101 ~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~~ 178 (257)
T PRK15066 101 VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIPTFV 178 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 47778999999987766666655555555544466543 2333333434444444456888999999999999999999
Q ss_pred HHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhc
Q 042733 451 YTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDF 490 (531)
Q Consensus 451 ~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef 490 (531)
+.+++..+|.+.|.+.+|.|+ |+. +||+.|..|++=..-+
T Consensus 179 ~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~ 220 (257)
T PRK15066 179 LTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFL 220 (257)
T ss_pred HHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHc
Confidence 999999999999999999999 998 9999999998754433
No 464
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.05 E-value=1.2e-05 Score=78.07 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 139 EQRKRLTVAVEFVANP---SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 139 GerqRv~iA~aL~~~p---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
|+||.+.++..+...+ .++++|||-++|+|..++.+++.|++..+.+.-+|+|||.|.
T Consensus 240 G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 240 GEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp HHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred HHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 9999999999888777 899999999999999999999999887766788999999875
No 465
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.03 E-value=8e-06 Score=86.71 Aligned_cols=134 Identities=18% Similarity=0.156 Sum_probs=84.9
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhc
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELV 128 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l 128 (531)
-+.++++|+|||||+++|+|..+. ..|.+...|... .+|.|. +++.+..-
T Consensus 159 i~I~G~sG~GKTtLl~~Ia~~~~~--~~gvI~~iGerg---------------------~ev~e~-------~~~~l~~~ 208 (432)
T PRK06793 159 IGIFAGSGVGKSTLLGMIAKNAKA--DINVISLVGERG---------------------REVKDF-------IRKELGEE 208 (432)
T ss_pred EEEECCCCCChHHHHHHHhccCCC--CeEEEEeCCCCc---------------------ccHHHH-------HHHHhhhc
Confidence 355556699999999999997653 234444444321 122222 11111111
Q ss_pred CC------chhhhccHHHHHHHHHHHHHh-------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 129 EL------NPFRQALFEQRKRLTVAVEFV-------ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 129 ~l------~~~~~~~~GerqRv~iA~aL~-------~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
++ ....+...++|+|++.+.+.+ .++-++++|+||++.|+. +++-..+.+....|.+..+.+|.+
T Consensus 209 gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~ 286 (432)
T PRK06793 209 GMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMK 286 (432)
T ss_pred ccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch
Confidence 11 233555669999999998888 789999999999999996 566556666554588888888842
Q ss_pred chHHHhccCeEEEEccCceeeecCC
Q 042733 196 SIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 196 ~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
.+++ |.-... +|.+...++
T Consensus 287 --~L~E---Rag~~~-~GSiT~~~t 305 (432)
T PRK06793 287 --KLLE---RSGKTQ-KGSITGIYT 305 (432)
T ss_pred --hHHH---HhccCC-CcceEEEEE
Confidence 3444 333344 477765543
No 466
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.95 E-value=2.4e-05 Score=91.75 Aligned_cols=73 Identities=18% Similarity=0.281 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHh------hC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 139 EQRKRLTVAVEFV------AN--PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 139 GerqRv~iA~aL~------~~--p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
||+-.++||.+|+ .+ =++|||||||..||+.....+++.|..+...+.+|+++||++ ++.+.+|.++.+.
T Consensus 819 GE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~~~~i~V~ 896 (908)
T COG0419 819 GERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERADVRIRVK 896 (908)
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhCCeEEEEE
Confidence 8887777766655 56 699999999999999999999999999988899999999985 4678899999987
Q ss_pred cCc
Q 042733 211 QVG 213 (531)
Q Consensus 211 ~~G 213 (531)
..|
T Consensus 897 k~~ 899 (908)
T COG0419 897 KDG 899 (908)
T ss_pred ecC
Confidence 533
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.94 E-value=9e-05 Score=70.28 Aligned_cols=117 Identities=22% Similarity=0.181 Sum_probs=70.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCC--CCCCCcHHhHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDI--HSPHDTLYDFTHCLYMFIEEG 124 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~--~~~~ltv~e~~~~~~~~~~~~ 124 (531)
..-+.+||+|||||||+++|+|..++ ..|.+.+.+........+..++++.|.+. ..+..+..+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~--~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 91 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPP--DERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD------------ 91 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH------------
Confidence 45688999999999999999997653 34667776543211122345666655432 222233221
Q ss_pred HHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCe-EEEEecCCchHHHhcc
Q 042733 125 MELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRT-VVCTIHQPSIDIFYSF 203 (531)
Q Consensus 125 l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~t-vi~~~H~~~~~i~~~~ 203 (531)
.+..++-.+|+.++++|--. +.+ .+.++. +..|.. ++.|.|-.+ ..+..
T Consensus 92 --------------------~l~~~lR~~pd~i~igEir~---~ea----~~~~~a-~~tGh~g~~~T~Ha~s--~~~~~ 141 (186)
T cd01130 92 --------------------LLRSALRMRPDRIIVGEVRG---GEA----LDLLQA-MNTGHPGGMTTIHANS--AEEAL 141 (186)
T ss_pred --------------------HHHHHhccCCCEEEEEccCc---HHH----HHHHHH-HhcCCCCceeeecCCC--HHHHH
Confidence 12334557899999999974 332 233433 356776 899999765 34444
Q ss_pred CeEE
Q 042733 204 DELF 207 (531)
Q Consensus 204 d~v~ 207 (531)
+|+.
T Consensus 142 ~Rl~ 145 (186)
T cd01130 142 TRLE 145 (186)
T ss_pred HHHH
Confidence 5543
No 468
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=97.94 E-value=5.4e-05 Score=75.23 Aligned_cols=118 Identities=13% Similarity=0.019 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHH
Q 042733 374 MPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAE-ALSAKPQIAIIVSSSFYT 452 (531)
Q Consensus 374 ~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~-~~~~~~~~A~~~~~~~~~ 452 (531)
..+++++.+...-...+...+...++.+..|. .....++.++..+.+......++|.+++ .+.++.+.+..++.++..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 209 (286)
T COG0842 131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLGV-PFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLIL 209 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56677777777666666666666666677773 3445566666677777777888888666 377888899999999999
Q ss_pred HHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhccC
Q 042733 453 IWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFLH 492 (531)
Q Consensus 453 ~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~~ 492 (531)
++..++|.+.|.+.+|.|+ |+. ++|..|+.+++-.....+
T Consensus 210 ~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~ 251 (286)
T COG0842 210 PLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGG 251 (286)
T ss_pred HHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCC
Confidence 9999999999999999988 998 999999999987766653
No 469
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.89 E-value=2.4e-06 Score=93.04 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=47.0
Q ss_pred HHHHHHHHH--HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchH-------H-HhccCeEEE
Q 042733 139 EQRKRLTVA--VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSID-------I-FYSFDELFL 208 (531)
Q Consensus 139 GerqRv~iA--~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~-------i-~~~~d~v~l 208 (531)
|++|||.|+ .++..+|+.. ...++.+.++++.+++.|.|+|+++|+++.. + ...+|.|+.
T Consensus 119 g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~ 188 (484)
T TIGR02655 119 YKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVI 188 (484)
T ss_pred hCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEE
Confidence 788888888 5665555433 4677889999999988899999999986421 1 346899998
Q ss_pred Ec
Q 042733 209 LK 210 (531)
Q Consensus 209 L~ 210 (531)
|+
T Consensus 189 L~ 190 (484)
T TIGR02655 189 LR 190 (484)
T ss_pred EE
Confidence 86
No 470
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.68 E-value=7e-05 Score=86.56 Aligned_cols=69 Identities=19% Similarity=0.098 Sum_probs=59.0
Q ss_pred HhhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHH---------hccCeEEEEccCceeeecC
Q 042733 150 FVANPSIISRDEPISGL-DARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIF---------YSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 150 L~~~p~lllLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~---------~~~d~v~lL~~~G~~v~~G 219 (531)
+..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++. +. +.||++++|.+ |++...|
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d-~~~s~~a~~i~~~~~t~i~L~n-~~a~~~~ 726 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISD-AERSGIIDVLKESCPTKICLPN-GAAREPG 726 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhcCchHHHHHhcCCeEEECCC-ccccccc
Confidence 46899999999999999 7999999999999998889999999999863 33 57999999975 7776555
Q ss_pred C
Q 042733 220 P 220 (531)
Q Consensus 220 ~ 220 (531)
+
T Consensus 727 ~ 727 (818)
T PRK13830 727 T 727 (818)
T ss_pred h
Confidence 3
No 471
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.66 E-value=0.00016 Score=86.95 Aligned_cols=138 Identities=17% Similarity=0.226 Sum_probs=68.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
.+-+.+|+||+|||||++++.+.... ...|.+.+++...... ... +-.++... ....+ ....+...++++
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~~~v~~~--~~~--~~~~~~~~-~~~~~----~l~~~~l~~il~ 277 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDRAFISKS--MEI--YSSANPDD-YNMKL----HLQRAFLSEILD 277 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeeccccccc--hhh--cccccccc-cchhH----HHHHHHHHHHhC
Confidence 35688999999999999999875432 2356777754221110 000 11111000 00111 111223444444
Q ss_pred hcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH---HcCCeEEEEecCCchHHHhcc
Q 042733 127 LVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTV---DMGRTVVCTIHQPSIDIFYSF 203 (531)
Q Consensus 127 ~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~---~~g~tvi~~~H~~~~~i~~~~ 203 (531)
..++.. ....+.|+| |..++-+|+||+- |.. ..++.++... ..|.+||+|||+.......-+
T Consensus 278 ~~~~~~--~~~~~~~~~------L~~krvLLVLDdv----~~~---~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~ 342 (1153)
T PLN03210 278 KKDIKI--YHLGAMEER------LKHRKVLIFIDDL----DDQ---DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGI 342 (1153)
T ss_pred CCCccc--CCHHHHHHH------HhCCeEEEEEeCC----CCH---HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCC
Confidence 444321 111234444 3355557789984 333 3344454432 358899999998653111225
Q ss_pred CeEEEE
Q 042733 204 DELFLL 209 (531)
Q Consensus 204 d~v~lL 209 (531)
|+++-+
T Consensus 343 ~~~~~v 348 (1153)
T PLN03210 343 DHIYEV 348 (1153)
T ss_pred CeEEEe
Confidence 665544
No 472
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.64 E-value=0.0002 Score=82.98 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCC---CCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCe
Q 042733 140 QRKRLTVAVEFVANPSIISRDEP---ISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 140 erqRv~iA~aL~~~p~lllLDEP---tsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~ 205 (531)
|.++++-+..-+++++++++||| |+.+|..+ ..+..++.+.+. |.+++++||.. ++.+++++
T Consensus 673 E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 673 EMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred HHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 44444444444569999999999 88899444 355566666665 58899999984 45555553
No 473
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.62 E-value=8.4e-05 Score=90.15 Aligned_cols=54 Identities=22% Similarity=0.330 Sum_probs=47.8
Q ss_pred HHHHHHH----HHHH--------HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 139 EQRKRLT----VAVE--------FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 139 GerqRv~----iA~a--------L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
|||||++ +|++ +..+|++++|||||+|||+.++..+++++.++ |.++|++||..
T Consensus 1251 Gek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1251 GERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred hHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 9999996 5644 55899999999999999999999999999887 78899999863
No 474
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=97.56 E-value=1.7e-05 Score=80.84 Aligned_cols=128 Identities=20% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHH--HHHHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheecccc---cccChhHHHHHHHHHHHHHHHHHHHHH
Q 042733 357 VEWT--IFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIG---FEWTAAMFFWYLLLMLFIFFYFTFYGM 431 (531)
Q Consensus 357 ~er~--v~~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~G---l~~~~~~f~~f~l~~~l~~~~~~~~~~ 431 (531)
.||. +..|-+..|. ++..|++++.+..+...++..+++.++ +.| +... +++..++.+++..++..+++.
T Consensus 184 ~ek~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~ 257 (344)
T PF12698_consen 184 EEKESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG--NFLLLLLLLLLFSLAFISFGF 257 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHhhhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc--chHHHHHHHHHHHHHHHHHHH
Confidence 4544 4555555664 889999999999999998888777664 344 4443 666667778888899999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhc
Q 042733 432 MAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDF 490 (531)
Q Consensus 432 ~i~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef 490 (531)
+++.++++...|..+++++..+.+.++|.+.+.+++|.++ |+. +.|..|..+++...-+
T Consensus 258 ~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~~~~~~ 318 (344)
T PF12698_consen 258 LISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSFLQWISSFLPFYWFIQGLRNIIY 318 (344)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999988888886777777777888999999 888 9999998888755443
No 475
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=97.50 E-value=0.0011 Score=65.30 Aligned_cols=57 Identities=18% Similarity=0.238 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHH-cCCeEEEEecCCc
Q 042733 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR-MVRNTVD-MGRTVVCTIHQPS 196 (531)
Q Consensus 140 erqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~-~L~~l~~-~g~tvi~~~H~~~ 196 (531)
|-+|++=...-+.+..++++||+..|=++.....+.. .++.+.+ .+..++++||..+
T Consensus 109 E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 109 EMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE 167 (235)
T ss_dssp HHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG
T ss_pred hHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch
Confidence 3444444444456778999999999999998887655 4566776 4888999999875
No 476
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.50 E-value=0.00011 Score=69.83 Aligned_cols=71 Identities=7% Similarity=0.003 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCch-HHHhccCeEEEEcc
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSI-DIFYSFDELFLLKQ 211 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~-~i~~~~d~v~lL~~ 211 (531)
|+-.|..||..+..+|+.+..+| +.+||...+++.+.+++..++|.+|++.+|.+.. .....||.++++..
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~ 132 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDV 132 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEEC
Confidence 78899999999999999988777 8999999999999998876567899999997632 24567899988864
No 477
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.49 E-value=8.5e-05 Score=72.64 Aligned_cols=58 Identities=10% Similarity=-0.019 Sum_probs=35.2
Q ss_pred CCCeEEEeCCCCCC--CHHHHHHHHHHHHH-HHHcCCeEEEEecCCch-------HHHhccCeEEEEc
Q 042733 153 NPSIISRDEPISGL--DARAATTVIRMVRN-TVDMGRTVVCTIHQPSI-------DIFYSFDELFLLK 210 (531)
Q Consensus 153 ~p~lllLDEPtsgL--D~~~~~~i~~~L~~-l~~~g~tvi~~~H~~~~-------~i~~~~d~v~lL~ 210 (531)
+|+++++|.++.=+ ++...+++...|++ +++.|.|+|+++|.... .+..++|-|+.|.
T Consensus 121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 45666666665422 33334455444544 45569999999995431 2344678888885
No 478
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.44 E-value=0.0011 Score=58.39 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCeEEEEecCCc
Q 042733 142 KRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-----MGRTVVCTIHQPS 196 (531)
Q Consensus 142 qRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tvi~~~H~~~ 196 (531)
+..........++.++++||.-.. ++.....+.+.+..... .+.++|++++...
T Consensus 73 ~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 73 VRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred HhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 445556666788999999998765 56666777777777643 4678888888643
No 479
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.37 E-value=0.00015 Score=69.24 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=19.7
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+..||+|||||||.++|++..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999975
No 480
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.36 E-value=0.00054 Score=73.98 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=21.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.|-+.+||+|+||||++..|++..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHH
Confidence 588999999999999999999853
No 481
>PRK13764 ATPase; Provisional
Probab=97.33 E-value=0.00095 Score=73.89 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=47.3
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEec---------------CCchHHHhccCeEEEEccCce
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH---------------QPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------------~~~~~i~~~~d~v~lL~~~G~ 214 (531)
|..+|+++++||.-..-| ++.+..++..|..++.|.| +++ .+...+|+++.+++ |+
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg-~i~~iID~IV~I~~-G~ 391 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVELG-MIPQIVDTVIFIED-GE 391 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhc-hHHHhhcEEEEEeC-CE
Confidence 678999999999985322 4444455556788999999 655 45668999999996 99
Q ss_pred e--eecCCC
Q 042733 215 E--ISVGPL 221 (531)
Q Consensus 215 ~--v~~G~~ 221 (531)
+ +|.+..
T Consensus 392 I~~v~~~~~ 400 (602)
T PRK13764 392 VSKVYDLEF 400 (602)
T ss_pred EEEEEeeee
Confidence 8 676653
No 482
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.32 E-value=0.00094 Score=71.95 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=49.8
Q ss_pred hCCCeEEEeCCCCCCCHH-HHHHHHHHHHHHHHcCCeEEEEe-cCCchHHHhccCeEE-EEccCceeeecCCCCC
Q 042733 152 ANPSIISRDEPISGLDAR-AATTVIRMVRNTVDMGRTVVCTI-HQPSIDIFYSFDELF-LLKQVGQEISVGPLGP 223 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~-~~~~i~~~L~~l~~~g~tvi~~~-H~~~~~i~~~~d~v~-lL~~~G~~v~~G~~~~ 223 (531)
.++++|++|||...+|.. ++..+.+.+..+.+.|+.+|+++ |+|. ++..+.|++. -+. .|-++...+|+.
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~-~l~~l~~rL~SR~~-~gl~v~i~~pd~ 265 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQ-KLSEFQDRLVSRFQ-MGLVAKLEPPDE 265 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHH-HHHHHHHHHhhHHh-cCceEeeCCCCH
Confidence 479999999999988765 45778889988888788788876 5554 4444445543 134 377777777763
No 483
>PRK04296 thymidine kinase; Provisional
Probab=97.27 E-value=0.0014 Score=62.49 Aligned_cols=64 Identities=22% Similarity=0.210 Sum_probs=49.2
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecC---------CchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQ---------PSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~---------~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
.+++++++||- --||. +++.++++.+++.|.+||++-++ +..++...+|.|..|.. .+..+|..
T Consensus 77 ~~~dvviIDEa-q~l~~---~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~--vC~~Cg~~ 149 (190)
T PRK04296 77 EKIDCVLIDEA-QFLDK---EQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKA--ICVHCGRK 149 (190)
T ss_pred CCCCEEEEEcc-ccCCH---HHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeE--EccccCCc
Confidence 57899999999 22443 44677777777789999999999 66678888999999963 56677754
No 484
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.14 E-value=0.0045 Score=65.30 Aligned_cols=72 Identities=19% Similarity=0.318 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCC-----CHHHHHHH----------HHHHHHHHH-cCCeEEEEecCCchHHHhc
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGL-----DARAATTV----------IRMVRNTVD-MGRTVVCTIHQPSIDIFYS 202 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgL-----D~~~~~~i----------~~~L~~l~~-~g~tvi~~~H~~~~~i~~~ 202 (531)
-.-|=.+|..||=...++||+||=||.= |...+..+ .+.++.+.+ .|.+.|+++--.. +.+..
T Consensus 326 STSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsg-dy~~v 404 (448)
T PF09818_consen 326 STSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSG-DYFDV 404 (448)
T ss_pred hHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccch-hhHhh
Confidence 3667788899999999999999999964 44444433 556677754 5887777775433 67888
Q ss_pred cCeEEEEcc
Q 042733 203 FDELFLLKQ 211 (531)
Q Consensus 203 ~d~v~lL~~ 211 (531)
+|+|++|++
T Consensus 405 AD~Vi~Md~ 413 (448)
T PF09818_consen 405 ADRVIMMDE 413 (448)
T ss_pred CCEEEEecC
Confidence 999999985
No 485
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.10 E-value=0.004 Score=66.09 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=46.3
Q ss_pred HHHhhCCCeEEEeC----------CCCCCCHHHHHHHHHHHHHHHH----cCCeEEEEecCCchHHHhccCeEEEEccCc
Q 042733 148 VEFVANPSIISRDE----------PISGLDARAATTVIRMVRNTVD----MGRTVVCTIHQPSIDIFYSFDELFLLKQVG 213 (531)
Q Consensus 148 ~aL~~~p~lllLDE----------PtsgLD~~~~~~i~~~L~~l~~----~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G 213 (531)
.+....|.++++|| +.+|.|...++.+.++|..+.. .+..||++||+|+. .|.-+ +.. |
T Consensus 233 ~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~-----LDpAl-lR~-G 305 (398)
T PTZ00454 233 LARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT-----LDPAL-LRP-G 305 (398)
T ss_pred HHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh-----CCHHH-cCC-C
Confidence 34457899999999 5567888888888888877642 25679999998752 23322 332 4
Q ss_pred e---eeecCCCCC
Q 042733 214 Q---EISVGPLGP 223 (531)
Q Consensus 214 ~---~v~~G~~~~ 223 (531)
| .++.+.|+.
T Consensus 306 Rfd~~I~~~~P~~ 318 (398)
T PTZ00454 306 RLDRKIEFPLPDR 318 (398)
T ss_pred cccEEEEeCCcCH
Confidence 4 366766653
No 486
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.05 E-value=0.0022 Score=67.08 Aligned_cols=121 Identities=18% Similarity=0.208 Sum_probs=67.3
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCce-EEEEEEEcCcccch--hhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGY-ITRNITVSGYPEKQ--ETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIE 122 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~-~~G~i~~~g~~~~~--~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~ 122 (531)
+++.+..||+||||||+|++|++...... ..+.+.....|..- ...++..+.+.|...--...+.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~------------ 201 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNF------------ 201 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCH------------
Confidence 37888999999999999999998532100 01233333333211 1122234566665321000000
Q ss_pred HHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhc
Q 042733 123 EGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYS 202 (531)
Q Consensus 123 ~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 202 (531)
.-++-.+|=++|+++++.|-- |..+....++ .+..|..|+.|.|-.+ ....
T Consensus 202 --------------------~~~l~~aLR~~Pd~i~vGEiR---d~et~~~al~----aa~tGh~v~tTlHa~~--~~~~ 252 (358)
T TIGR02524 202 --------------------AAGVRNALRRKPHAILVGEAR---DAETISAALE----AALTGHPVYTTLHSSG--VAET 252 (358)
T ss_pred --------------------HHHHHHHhccCCCEEeeeeeC---CHHHHHHHHH----HHHcCCcEEEeeccCC--HHHH
Confidence 111223566799999999944 5555543332 3346888999999754 3444
Q ss_pred cCeEE
Q 042733 203 FDELF 207 (531)
Q Consensus 203 ~d~v~ 207 (531)
.+|++
T Consensus 253 i~Rl~ 257 (358)
T TIGR02524 253 IRRLV 257 (358)
T ss_pred HHHHH
Confidence 45544
No 487
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.05 E-value=0.0022 Score=64.36 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=35.2
Q ss_pred HHHHHHHHh--hCCCeEEEeCCCCCCCH-------H-HHHHHHHHHHHHHHc-CCeEEEEecC
Q 042733 143 RLTVAVEFV--ANPSIISRDEPISGLDA-------R-AATTVIRMVRNTVDM-GRTVVCTIHQ 194 (531)
Q Consensus 143 Rv~iA~aL~--~~p~lllLDEPtsgLD~-------~-~~~~i~~~L~~l~~~-g~tvi~~~H~ 194 (531)
-+..++.++ .+|+++++|..+.-.+. . ...+++..|++++++ +.||++++|-
T Consensus 128 i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~ 190 (271)
T cd01122 128 VLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHL 190 (271)
T ss_pred HHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 334444444 47999999998664432 1 234667778888764 9999999884
No 488
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.02 E-value=0.002 Score=69.55 Aligned_cols=60 Identities=10% Similarity=0.052 Sum_probs=41.7
Q ss_pred hCCCeEEEeCCCCC----CC-----HHHHHHHHHHHHHHHH-cCCeEEEEecCCch-------HHHhccCeEEEEcc
Q 042733 152 ANPSIISRDEPISG----LD-----ARAATTVIRMVRNTVD-MGRTVVCTIHQPSI-------DIFYSFDELFLLKQ 211 (531)
Q Consensus 152 ~~p~lllLDEPtsg----LD-----~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~-------~i~~~~d~v~lL~~ 211 (531)
.+|+++++|.-++= ++ ....+++...|.++++ .|.|+++++|.... .+.+.+|.|+.|+.
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~ 245 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEG 245 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEec
Confidence 47999999987652 11 2334566666777765 59999999996432 14567899999874
No 489
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=96.95 E-value=0.0022 Score=53.42 Aligned_cols=28 Identities=25% Similarity=0.493 Sum_probs=25.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRN 180 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~ 180 (531)
.|++++||||+++||+.....++++|++
T Consensus 63 ~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 63 SPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp TBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3789999999999999999999999874
No 490
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=96.86 E-value=0.0062 Score=65.34 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=47.3
Q ss_pred EeCC--CCCCCHHHHHHHHHHHHHHHHcCC-------eEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 159 RDEP--ISGLDARAATTVIRMVRNTVDMGR-------TVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 159 LDEP--tsgLD~~~~~~i~~~L~~l~~~g~-------tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+.|| +.|+||.....+.+++.+....+. ||++.+||.+. ..+|++..+.+ |+++..+..
T Consensus 276 ~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~d-G~ivLsr~l 343 (440)
T TIGR01026 276 AGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILD-GHIVLSRAL 343 (440)
T ss_pred cCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccc-eEEEEecch
Confidence 4665 569999999999999998876666 78888898642 35788888886 999998765
No 491
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=96.83 E-value=0.0016 Score=75.72 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=47.3
Q ss_pred HHHHHhhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 146 VAVEFVANPSIISRDEPISGL-DARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~ 731 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS 731 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 567788999999999999999 799999999999999888999999999986
No 492
>PRK06893 DNA replication initiation factor; Validated
Probab=96.82 E-value=0.0049 Score=60.44 Aligned_cols=71 Identities=11% Similarity=0.134 Sum_probs=44.3
Q ss_pred hCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhcc-CeEEE-EccCceeeecCCCCC
Q 042733 152 ANPSIISRDEPISGL-DARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSF-DELFL-LKQVGQEISVGPLGP 223 (531)
Q Consensus 152 ~~p~lllLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~-d~v~l-L~~~G~~v~~G~~~~ 223 (531)
.++++|++||..... |...+..+.+++.+..++|+++|+++++......... +++.= +. .|.++...++++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~-~g~~~~l~~pd~ 163 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLT-WGEIYQLNDLTD 163 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHh-cCCeeeCCCCCH
Confidence 478999999998764 6777778889898887777777666554322222211 11110 22 355666666653
No 493
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.81 E-value=0.0011 Score=51.10 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
++++..||+|||||||+++|.=.
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998753
No 494
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=96.69 E-value=0.01 Score=55.98 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=30.4
Q ss_pred HHHHHHH--HHHHHhh-CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 042733 139 EQRKRLT--VAVEFVA-NPSIISRDEPISGLDARAATTVIRMVRNTVDM 184 (531)
Q Consensus 139 GerqRv~--iA~aL~~-~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~ 184 (531)
||++++. +++.+-. ++++ .|+|++|.....++.+.|.++.++
T Consensus 151 ~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 151 GERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 6777766 4454433 3443 399999999999999999887654
No 495
>PF13175 AAA_15: AAA ATPase domain
Probab=96.64 E-value=0.0044 Score=65.66 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHh------hC-CC---eEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCc
Q 042733 139 EQRKRLTVAVEFV------AN-PS---IISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPS 196 (531)
Q Consensus 139 GerqRv~iA~aL~------~~-p~---lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~ 196 (531)
|.|+.+.++..+. .+ +. ++++|||=+.|.|..++.+++.|.++.+ .+..||+|||.|.
T Consensus 345 G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~ 413 (415)
T PF13175_consen 345 GEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPF 413 (415)
T ss_pred chHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChh
Confidence 8998888877653 12 22 9999999999999999999999999987 5789999999874
No 496
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.61 E-value=0.0085 Score=63.08 Aligned_cols=60 Identities=8% Similarity=0.051 Sum_probs=40.1
Q ss_pred hCCCeEEEeCCCC----CCC-----HHHHHHHHHHHHHHHH-cCCeEEEEecCCch-------HHHhccCeEEEEcc
Q 042733 152 ANPSIISRDEPIS----GLD-----ARAATTVIRMVRNTVD-MGRTVVCTIHQPSI-------DIFYSFDELFLLKQ 211 (531)
Q Consensus 152 ~~p~lllLDEPts----gLD-----~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~-------~i~~~~d~v~lL~~ 211 (531)
.+|+++++|+-.+ .+| ....+++...|.++++ .+.|++++.|-... .+.+.+|.|+.+..
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~ 233 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEG 233 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEc
Confidence 5899999999633 333 2334456666777765 58999999884221 24567898888863
No 497
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.59 E-value=0.0077 Score=69.23 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=33.3
Q ss_pred hhCCCeEEEeC----------CCCCCCHHHHHHHHHHHHHHHHcCCe-EEEEecCCc
Q 042733 151 VANPSIISRDE----------PISGLDARAATTVIRMVRNTVDMGRT-VVCTIHQPS 196 (531)
Q Consensus 151 ~~~p~lllLDE----------PtsgLD~~~~~~i~~~L~~l~~~g~t-vi~~~H~~~ 196 (531)
-..|.+|++|| ++.++|......+.+.+..+.+++.. ||.++|.++
T Consensus 269 ~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~ 325 (733)
T TIGR01243 269 ENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPD 325 (733)
T ss_pred hcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChh
Confidence 45699999999 66777777777777777776655544 455788764
No 498
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=96.57 E-value=0.0018 Score=59.60 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRM 177 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~ 177 (531)
+++++..+++++...|-++++ +..|......+.+.
T Consensus 107 ~~~~~~~~~~~~~~~p~ivv~----NK~Dl~~~~~~~~~ 141 (176)
T cd01881 107 KLYDLETILGLLTAKPVIYVL----NKIDLDDAEELEEE 141 (176)
T ss_pred HHhhhhhHHHHHhhCCeEEEE----EchhcCchhHHHHH
Confidence 556677778888889999998 88887666555543
No 499
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.46 E-value=0.025 Score=56.82 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=35.0
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEE
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELF 207 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~ 207 (531)
+..+|=++|++++++|... +.++..++ +.+..|.-++.|.|-.+ .....+|+.
T Consensus 142 l~~~lR~~PD~i~vgEiR~---~e~a~~~~----~aa~tGh~v~tTlHa~~--~~~ai~Rl~ 194 (264)
T cd01129 142 LRAILRQDPDIIMVGEIRD---AETAEIAV----QAALTGHLVLSTLHTND--APGAITRLL 194 (264)
T ss_pred HHHHhccCCCEEEeccCCC---HHHHHHHH----HHHHcCCcEEEEeccCC--HHHHHHHHH
Confidence 4455667999999999875 33333333 33446888999999755 455556654
No 500
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.46 E-value=0.015 Score=56.56 Aligned_cols=59 Identities=24% Similarity=0.192 Sum_probs=43.2
Q ss_pred hCCCeEEEeCC-----CCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc--------hHHHhccCeEEEEc
Q 042733 152 ANPSIISRDEP-----ISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS--------IDIFYSFDELFLLK 210 (531)
Q Consensus 152 ~~p~lllLDEP-----tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~--------~~i~~~~d~v~lL~ 210 (531)
.+++.+++|-. +.+.|...+..+.++++.+++.|.|+++++|... ..+...||.+++|.
T Consensus 106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 36888999942 2345566677788899999888999999999631 11355789999885
Done!