Query 042733
Match_columns 531
No_of_seqs 463 out of 3460
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 15:31:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 1.6E-38 5.6E-43 327.9 22.0 194 25-222 22-249 (366)
2 3gfo_A Cobalt import ATP-bindi 100.0 4.7E-38 1.6E-42 314.6 22.8 191 27-222 7-229 (275)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 5.4E-38 1.9E-42 323.8 21.1 190 27-222 4-224 (359)
4 3rlf_A Maltose/maltodextrin im 100.0 9.2E-38 3.1E-42 324.2 22.8 190 27-222 3-219 (381)
5 2olj_A Amino acid ABC transpor 100.0 1.5E-37 5.2E-42 309.1 22.8 189 27-221 24-243 (263)
6 3tif_A Uncharacterized ABC tra 100.0 1.3E-37 4.4E-42 305.0 21.7 190 28-222 2-230 (235)
7 1b0u_A Histidine permease; ABC 100.0 1.5E-37 5.2E-42 309.3 22.3 189 27-221 6-237 (262)
8 2pcj_A ABC transporter, lipopr 100.0 1.3E-37 4.4E-42 302.8 21.1 187 27-220 4-222 (224)
9 1vpl_A ABC transporter, ATP-bi 100.0 2.9E-37 9.9E-42 306.0 22.9 189 27-221 15-230 (256)
10 1g6h_A High-affinity branched- 100.0 2.4E-37 8.2E-42 307.1 20.3 189 27-221 7-237 (257)
11 1z47_A CYSA, putative ABC-tran 100.0 4.6E-37 1.6E-41 316.9 22.1 193 25-222 12-231 (355)
12 2yyz_A Sugar ABC transporter, 100.0 6.4E-37 2.2E-41 316.6 21.8 189 28-222 4-219 (359)
13 1ji0_A ABC transporter; ATP bi 100.0 4.4E-37 1.5E-41 302.1 19.3 189 27-221 6-223 (240)
14 1g29_1 MALK, maltose transport 100.0 8.9E-37 3.1E-41 317.3 22.4 190 27-222 3-225 (372)
15 2onk_A Molybdate/tungstate ABC 100.0 5.5E-37 1.9E-41 301.2 19.4 170 48-221 26-211 (240)
16 2it1_A 362AA long hypothetical 100.0 7E-37 2.4E-41 316.6 20.9 189 28-222 4-219 (362)
17 1oxx_K GLCV, glucose, ABC tran 100.0 6.5E-37 2.2E-41 316.5 20.5 189 28-222 4-226 (353)
18 4g1u_C Hemin import ATP-bindin 100.0 6E-37 2E-41 305.5 18.6 191 26-222 10-233 (266)
19 1v43_A Sugar-binding transport 100.0 1.1E-36 3.7E-41 316.3 21.1 189 28-222 12-227 (372)
20 2yz2_A Putative ABC transporte 100.0 4.8E-36 1.6E-40 299.2 22.4 191 27-221 2-222 (266)
21 3d31_A Sulfate/molybdate ABC t 100.0 2.9E-36 1E-40 310.6 20.0 188 28-222 2-213 (348)
22 2ihy_A ABC transporter, ATP-bi 100.0 3.6E-36 1.2E-40 301.8 19.7 192 25-222 19-248 (279)
23 2zu0_C Probable ATP-dependent 100.0 2.7E-35 9.4E-40 293.8 22.3 197 22-222 15-250 (267)
24 2d2e_A SUFC protein; ABC-ATPas 100.0 2.3E-35 7.7E-40 291.7 20.9 191 27-221 3-228 (250)
25 2ff7_A Alpha-hemolysin translo 100.0 2.2E-35 7.6E-40 291.2 19.1 189 26-221 6-227 (247)
26 2qi9_C Vitamin B12 import ATP- 100.0 4E-35 1.4E-39 289.5 19.9 194 8-222 4-218 (249)
27 2nq2_C Hypothetical ABC transp 100.0 8.4E-35 2.9E-39 288.0 21.8 180 27-222 4-213 (253)
28 3nh6_A ATP-binding cassette SU 100.0 4.3E-35 1.5E-39 297.0 17.9 190 25-222 51-273 (306)
29 2ixe_A Antigen peptide transpo 100.0 8.2E-35 2.8E-39 290.9 18.5 189 27-221 16-240 (271)
30 1sgw_A Putative ABC transporte 100.0 5.4E-35 1.8E-39 282.0 15.2 178 27-215 10-210 (214)
31 2ghi_A Transport protein; mult 100.0 4.8E-34 1.6E-38 283.7 19.3 188 26-221 16-237 (260)
32 1mv5_A LMRA, multidrug resista 100.0 6.4E-35 2.2E-39 287.3 12.0 186 28-221 2-221 (243)
33 3gd7_A Fusion complex of cysti 100.0 2.9E-34 9.9E-39 299.8 15.9 190 25-222 17-238 (390)
34 2pjz_A Hypothetical protein ST 100.0 2.2E-33 7.6E-38 279.1 20.0 184 28-221 2-210 (263)
35 2pze_A Cystic fibrosis transme 100.0 5.1E-33 1.8E-37 271.3 17.3 178 27-221 6-213 (229)
36 2cbz_A Multidrug resistance-as 100.0 2.2E-32 7.6E-37 268.1 18.9 177 28-221 4-212 (237)
37 3b5x_A Lipid A export ATP-bind 100.0 8.6E-33 3E-37 304.7 17.4 190 26-222 340-563 (582)
38 2yl4_A ATP-binding cassette SU 100.0 1.8E-32 6E-37 303.0 18.5 189 28-223 342-567 (595)
39 3b60_A Lipid A export ATP-bind 100.0 1.8E-32 6.1E-37 302.2 18.5 189 26-221 340-562 (582)
40 4a82_A Cystic fibrosis transme 100.0 1.7E-32 5.9E-37 302.1 18.1 190 26-222 338-560 (578)
41 3qf4_A ABC transporter, ATP-bi 100.0 1.7E-32 5.9E-37 302.4 18.0 191 25-222 339-562 (587)
42 3qf4_B Uncharacterized ABC tra 100.0 3.8E-32 1.3E-36 300.3 17.4 189 26-222 353-574 (598)
43 2bbs_A Cystic fibrosis transme 100.0 1.6E-30 5.3E-35 262.0 16.1 176 26-222 39-243 (290)
44 4f4c_A Multidrug resistance pr 100.0 1.5E-30 5.1E-35 309.9 13.3 190 26-222 1075-1300(1321)
45 4f4c_A Multidrug resistance pr 100.0 6.8E-30 2.3E-34 304.3 17.8 190 26-222 414-637 (1321)
46 3g5u_A MCG1178, multidrug resi 100.0 2.4E-29 8.4E-34 298.8 17.2 190 26-222 386-609 (1284)
47 3bk7_A ABC transporter ATP-bin 100.0 1.3E-28 4.6E-33 271.1 18.3 183 25-223 355-560 (607)
48 3g5u_A MCG1178, multidrug resi 100.0 8.3E-29 2.8E-33 294.2 17.2 189 26-221 1029-1253(1284)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 4E-28 1.4E-32 264.5 17.5 183 25-223 285-490 (538)
50 3ozx_A RNAse L inhibitor; ATP 99.9 1.1E-27 3.7E-32 260.7 15.3 196 25-235 267-486 (538)
51 3j16_B RLI1P; ribosome recycli 99.9 4.6E-27 1.6E-31 258.6 14.8 165 47-224 379-557 (608)
52 1yqt_A RNAse L inhibitor; ATP- 99.9 2.8E-27 9.7E-32 257.8 8.2 180 28-211 21-233 (538)
53 3bk7_A ABC transporter ATP-bin 99.9 2.9E-27 1E-31 260.5 7.5 177 31-211 95-303 (607)
54 2iw3_A Elongation factor 3A; a 99.9 7.3E-26 2.5E-30 258.1 15.9 97 119-220 878-981 (986)
55 2iw3_A Elongation factor 3A; a 99.9 1.6E-25 5.5E-30 255.2 18.1 176 26-221 434-630 (986)
56 3ozx_A RNAse L inhibitor; ATP 99.9 3.7E-26 1.3E-30 248.5 6.8 166 46-216 25-216 (538)
57 3j16_B RLI1P; ribosome recycli 99.9 1.8E-25 6.1E-30 246.0 11.2 181 32-217 82-301 (608)
58 3ux8_A Excinuclease ABC, A sub 99.9 2.3E-25 8E-30 249.3 10.0 96 124-222 185-294 (670)
59 3ux8_A Excinuclease ABC, A sub 99.9 6.3E-24 2.1E-28 237.8 13.0 112 107-221 504-635 (670)
60 4aby_A DNA repair protein RECN 99.9 2.6E-22 8.7E-27 211.9 17.4 79 137-219 297-381 (415)
61 2r6f_A Excinuclease ABC subuni 99.9 3.7E-22 1.3E-26 226.1 16.7 100 120-221 824-937 (972)
62 2vf7_A UVRA2, excinuclease ABC 99.9 4.4E-22 1.5E-26 225.0 16.2 101 119-221 708-822 (842)
63 3pih_A Uvrabc system protein A 99.9 8.9E-22 3.1E-26 224.2 14.5 101 119-222 783-898 (916)
64 2ygr_A Uvrabc system protein A 99.9 1.7E-21 5.9E-26 221.4 15.5 100 120-221 842-955 (993)
65 2npi_A Protein CLP1; CLP1-PCF1 99.8 8E-23 2.7E-27 218.2 -3.5 163 47-222 139-334 (460)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 6.2E-20 2.1E-24 190.8 18.1 77 138-217 282-364 (365)
67 3b85_A Phosphate starvation-in 99.8 2.8E-23 9.5E-28 199.3 -9.3 130 47-196 23-159 (208)
68 4gp7_A Metallophosphoesterase; 99.8 1.9E-20 6.4E-25 173.9 4.1 139 32-196 1-160 (171)
69 1e69_A Chromosome segregation 99.8 6.3E-19 2.2E-23 180.1 12.8 82 137-221 221-308 (322)
70 1ye8_A Protein THEP1, hypothet 99.8 1.5E-19 5E-24 169.2 2.8 141 49-218 3-160 (178)
71 1znw_A Guanylate kinase, GMP k 99.7 5.5E-21 1.9E-25 182.8 -11.6 155 47-211 21-203 (207)
72 1tq4_A IIGP1, interferon-induc 99.7 3.4E-20 1.2E-24 194.8 -6.8 151 48-207 71-248 (413)
73 3qkt_A DNA double-strand break 99.7 5.9E-16 2E-20 159.2 18.0 70 139-210 252-327 (339)
74 3sop_A Neuronal-specific septi 99.7 1.1E-18 3.9E-23 173.8 -3.3 138 49-196 5-151 (270)
75 3b9q_A Chloroplast SRP recepto 99.6 9.1E-18 3.1E-22 169.9 -1.5 159 47-215 101-284 (302)
76 2pt7_A CAG-ALFA; ATPase, prote 99.6 7.7E-17 2.6E-21 165.1 4.7 119 48-215 173-292 (330)
77 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 1.1E-15 3.7E-20 138.4 11.3 72 137-210 59-136 (148)
78 2ehv_A Hypothetical protein PH 99.6 6E-17 2E-21 158.0 2.1 154 46-211 30-207 (251)
79 1cr0_A DNA primase/helicase; R 99.6 1.9E-16 6.5E-21 159.4 4.5 165 47-215 36-237 (296)
80 2og2_A Putative signal recogni 99.6 6.5E-17 2.2E-21 166.9 -0.2 139 47-194 158-313 (359)
81 3pih_A Uvrabc system protein A 99.6 3.5E-15 1.2E-19 170.2 10.4 99 121-222 444-556 (916)
82 2r6f_A Excinuclease ABC subuni 99.6 7.8E-15 2.7E-19 166.5 12.7 98 124-223 487-597 (972)
83 2dpy_A FLII, flagellum-specifi 99.5 3.6E-17 1.2E-21 173.5 -7.8 179 26-221 130-339 (438)
84 2o8b_B DNA mismatch repair pro 99.5 1.2E-15 4.1E-20 176.6 3.7 159 27-221 750-937 (1022)
85 1tf7_A KAIC; homohexamer, hexa 99.5 3.6E-15 1.2E-19 162.2 7.0 143 47-214 282-444 (525)
86 2ygr_A Uvrabc system protein A 99.5 1.9E-14 6.4E-19 163.9 12.6 97 124-222 504-613 (993)
87 2vf7_A UVRA2, excinuclease ABC 99.5 1.2E-14 4E-19 164.5 10.7 98 124-223 362-472 (842)
88 3thx_A DNA mismatch repair pro 99.5 6.4E-15 2.2E-19 168.6 5.8 81 139-222 725-809 (934)
89 3szr_A Interferon-induced GTP- 99.5 4.5E-16 1.5E-20 171.9 -4.3 182 27-221 10-232 (608)
90 2v9p_A Replication protein E1; 99.5 3.7E-18 1.3E-22 172.3 -20.1 155 27-235 101-271 (305)
91 1z6g_A Guanylate kinase; struc 99.5 1.1E-17 3.9E-22 161.3 -15.9 143 29-183 12-175 (218)
92 4a74_A DNA repair and recombin 99.5 8.9E-15 3E-19 140.7 2.3 147 46-211 25-199 (231)
93 2eyu_A Twitching motility prot 99.5 1.4E-14 4.8E-19 143.5 3.4 121 47-210 26-146 (261)
94 1tf7_A KAIC; homohexamer, hexa 99.5 2E-15 6.8E-20 164.2 -3.0 151 47-214 40-211 (525)
95 2qnr_A Septin-2, protein NEDD5 99.4 2E-15 6.7E-20 152.8 -4.1 152 31-196 2-168 (301)
96 3aez_A Pantothenate kinase; tr 99.4 9.9E-15 3.4E-19 148.2 -0.9 104 47-168 91-209 (312)
97 1rj9_A FTSY, signal recognitio 99.4 1.2E-14 4.3E-19 146.9 -0.6 142 47-195 103-258 (304)
98 3thx_B DNA mismatch repair pro 99.4 6.3E-14 2.2E-18 160.1 3.8 65 138-205 738-804 (918)
99 2obl_A ESCN; ATPase, hydrolase 99.4 2E-14 6.9E-19 148.0 -0.6 174 26-221 44-250 (347)
100 2w0m_A SSO2452; RECA, SSPF, un 99.4 5.8E-14 2E-18 134.8 2.0 153 47-211 24-191 (235)
101 3jvv_A Twitching mobility prot 99.4 7.3E-14 2.5E-18 144.2 2.4 123 46-211 123-245 (356)
102 3asz_A Uridine kinase; cytidin 99.4 8.1E-16 2.8E-20 146.7 -12.4 128 47-195 7-161 (211)
103 4ad8_A DNA repair protein RECN 99.3 8.2E-13 2.8E-17 143.3 8.1 70 139-211 401-472 (517)
104 3kta_B Chromosome segregation 99.3 4.2E-12 1.4E-16 117.8 10.2 73 135-210 64-140 (173)
105 1wb9_A DNA mismatch repair pro 99.3 3.6E-13 1.2E-17 152.4 3.0 142 47-219 608-751 (800)
106 2cvh_A DNA repair and recombin 99.3 2.5E-11 8.4E-16 115.6 14.7 72 140-211 91-184 (220)
107 1ewq_A DNA mismatch repair pro 99.3 7.1E-13 2.4E-17 149.2 4.6 119 42-196 566-699 (765)
108 2o5v_A DNA replication and rep 99.3 3.1E-12 1.1E-16 132.1 8.7 76 139-223 269-353 (359)
109 1pzn_A RAD51, DNA repair and r 99.3 9.1E-13 3.1E-17 135.9 4.4 154 46-220 131-309 (349)
110 2qag_C Septin-7; cell cycle, c 99.3 2.1E-13 7.3E-18 143.5 -0.8 154 27-196 11-178 (418)
111 2i3b_A HCR-ntpase, human cance 99.3 6.8E-14 2.3E-18 131.8 -4.6 145 47-219 2-169 (189)
112 1nlf_A Regulatory protein REPA 99.3 2.2E-12 7.4E-17 128.7 5.5 137 46-196 30-182 (279)
113 2bdt_A BH3686; alpha-beta prot 99.2 3.5E-14 1.2E-18 133.0 -12.1 161 47-223 3-181 (189)
114 2jeo_A Uridine-cytidine kinase 99.2 5.3E-13 1.8E-17 130.6 -4.9 133 29-194 14-164 (245)
115 3auy_A DNA double-strand break 99.2 6.4E-11 2.2E-15 123.0 10.0 74 138-214 283-363 (371)
116 1s96_A Guanylate kinase, GMP k 99.1 2.4E-12 8.1E-17 124.1 -1.4 124 47-196 17-141 (219)
117 1pui_A ENGB, probable GTP-bind 99.1 1.9E-12 6.6E-17 122.5 -2.2 49 139-187 153-202 (210)
118 2ewv_A Twitching motility prot 99.1 1.3E-11 4.6E-16 128.2 2.4 120 47-209 137-256 (372)
119 1w1w_A Structural maintenance 99.1 2.1E-10 7.3E-15 121.4 10.1 73 137-211 335-411 (430)
120 1n0w_A DNA repair protein RAD5 99.1 1.8E-10 6.1E-15 111.4 7.5 142 46-211 24-208 (243)
121 1nij_A Hypothetical protein YJ 99.0 1.1E-12 3.9E-17 133.5 -10.5 138 47-196 5-190 (318)
122 2kjq_A DNAA-related protein; s 99.0 3.6E-10 1.2E-14 102.1 4.8 45 151-196 81-126 (149)
123 2bbw_A Adenylate kinase 4, AK4 98.9 3.6E-12 1.2E-16 124.6 -10.2 130 47-185 28-200 (246)
124 1sxj_E Activator 1 40 kDa subu 98.9 3.9E-10 1.3E-14 115.5 4.1 134 49-197 39-176 (354)
125 1lw7_A Transcriptional regulat 98.9 4.7E-11 1.6E-15 123.8 -3.2 158 44-222 168-351 (365)
126 1zp6_A Hypothetical protein AT 98.9 1.3E-10 4.3E-15 108.5 -1.2 122 47-182 10-148 (191)
127 3ec2_A DNA replication protein 98.9 7.2E-09 2.5E-13 95.8 10.4 47 151-197 98-145 (180)
128 2gza_A Type IV secretion syste 98.9 1.8E-09 6.1E-14 111.7 6.7 123 48-211 177-301 (361)
129 2qag_B Septin-6, protein NEDD5 98.8 1.8E-09 6.3E-14 113.3 6.0 139 49-194 45-218 (427)
130 3e70_C DPA, signal recognition 98.8 3.6E-10 1.2E-14 115.3 0.3 137 47-194 130-278 (328)
131 2rcn_A Probable GTPase ENGC; Y 98.8 1.5E-09 5E-14 111.7 4.6 102 46-150 215-328 (358)
132 1udx_A The GTP-binding protein 98.7 3.1E-09 1.1E-13 111.6 3.7 154 30-206 147-319 (416)
133 2yhs_A FTSY, cell division pro 98.7 1.5E-09 5E-14 115.6 -0.4 139 47-193 294-447 (503)
134 3lda_A DNA repair protein RAD5 98.7 1.1E-07 3.9E-12 99.3 13.7 143 46-211 178-362 (400)
135 2f1r_A Molybdopterin-guanine d 98.6 3E-10 1E-14 105.0 -9.2 135 48-186 4-164 (171)
136 2dr3_A UPF0273 protein PH0284; 98.5 6.3E-08 2.2E-12 93.4 3.3 60 152-211 127-196 (247)
137 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 2E-10 6.8E-15 119.7 -15.9 163 47-222 21-209 (392)
138 2zr9_A Protein RECA, recombina 98.4 6.5E-07 2.2E-11 92.0 10.3 77 143-220 127-237 (349)
139 1odf_A YGR205W, hypothetical 3 98.4 3.7E-08 1.3E-12 98.7 -0.0 106 47-170 32-169 (290)
140 1oix_A RAS-related protein RAB 98.3 5.1E-08 1.7E-12 90.9 -0.3 37 142-180 152-188 (191)
141 1lvg_A Guanylate kinase, GMP k 98.3 9.4E-10 3.2E-14 104.0 -13.7 56 146-210 116-172 (198)
142 3c8u_A Fructokinase; YP_612366 98.3 2.5E-09 8.4E-14 101.7 -11.3 139 47-205 23-168 (208)
143 2qm8_A GTPase/ATPase; G protei 98.3 2.7E-08 9.1E-13 101.9 -4.7 41 139-183 214-260 (337)
144 2oap_1 GSPE-2, type II secreti 98.2 2.7E-09 9.2E-14 115.2 -13.0 52 48-101 262-313 (511)
145 1ls1_A Signal recognition part 98.2 1.5E-06 5E-11 87.2 7.6 107 47-181 99-209 (295)
146 1htw_A HI0065; nucleotide-bind 98.2 1.2E-07 4.1E-12 86.3 -0.7 61 47-113 34-94 (158)
147 2px0_A Flagellar biosynthesis 98.2 1.1E-06 3.8E-11 88.1 5.5 135 47-217 106-246 (296)
148 1vma_A Cell division protein F 98.2 1.1E-06 3.9E-11 88.5 5.4 105 47-182 105-212 (306)
149 2r6a_A DNAB helicase, replicat 98.2 1.3E-06 4.6E-11 92.8 6.1 155 46-211 203-398 (454)
150 2f9l_A RAB11B, member RAS onco 98.2 1.7E-06 5.7E-11 80.9 6.0 38 143-182 129-166 (199)
151 1u0l_A Probable GTPase ENGC; p 98.1 4.7E-07 1.6E-11 91.1 1.1 90 46-138 169-289 (301)
152 2yv5_A YJEQ protein; hydrolase 98.1 3.7E-07 1.3E-11 92.0 0.2 100 46-148 165-300 (302)
153 1p9r_A General secretion pathw 98.1 1.1E-07 3.6E-12 100.1 -4.6 108 47-158 168-314 (418)
154 2ce7_A Cell division protein F 98.0 1.7E-05 5.7E-10 84.7 9.7 58 139-196 94-165 (476)
155 2ius_A DNA translocase FTSK; n 97.9 3.2E-06 1.1E-10 90.8 2.5 51 146-197 289-344 (512)
156 1t9h_A YLOQ, probable GTPase E 97.9 2.3E-06 7.9E-11 86.2 0.9 62 47-110 174-244 (307)
157 1sq5_A Pantothenate kinase; P- 97.9 4.9E-07 1.7E-11 91.2 -4.3 114 47-168 81-199 (308)
158 2x8a_A Nuclear valosin-contain 97.8 1.1E-07 3.8E-12 94.4 -9.5 108 49-164 47-164 (274)
159 1in4_A RUVB, holliday junction 97.8 5.5E-07 1.9E-11 91.8 -5.3 120 47-184 52-195 (334)
160 2xau_A PRE-mRNA-splicing facto 97.7 4.5E-05 1.5E-09 86.3 8.2 66 139-205 194-261 (773)
161 3hr8_A Protein RECA; alpha and 97.7 0.00023 8E-09 72.9 11.9 132 47-211 62-229 (356)
162 2z4s_A Chromosomal replication 97.7 3.4E-05 1.2E-09 81.6 5.7 71 152-223 193-265 (440)
163 1qhl_A Protein (cell division 97.5 2.6E-06 8.8E-11 82.1 -4.7 73 26-101 8-91 (227)
164 3lnc_A Guanylate kinase, GMP k 97.5 1.5E-07 5.2E-12 90.6 -13.6 25 47-71 28-53 (231)
165 2e87_A Hypothetical protein PH 97.5 0.00017 5.8E-09 74.0 8.2 56 139-196 235-293 (357)
166 3tr0_A Guanylate kinase, GMP k 97.5 1E-05 3.4E-10 75.7 -1.8 53 47-105 8-63 (205)
167 3k1j_A LON protease, ATP-depen 97.4 0.00015 5.2E-09 79.7 7.0 129 48-180 62-227 (604)
168 1jjv_A Dephospho-COA kinase; P 97.4 2.9E-05 9.8E-10 72.9 1.0 127 48-210 4-131 (206)
169 1fnn_A CDC6P, cell division co 97.4 0.00049 1.7E-08 70.4 10.0 44 152-196 124-170 (389)
170 2qtf_A Protein HFLX, GTP-bindi 97.3 0.00025 8.7E-09 73.0 6.6 128 49-183 182-353 (364)
171 3euj_A Chromosome partition pr 97.3 4E-05 1.4E-09 81.6 0.3 48 30-86 20-67 (483)
172 3b9p_A CG5977-PA, isoform A; A 97.0 0.0019 6.5E-08 63.8 9.7 67 140-206 100-183 (297)
173 4a1f_A DNAB helicase, replicat 97.0 0.0017 5.9E-08 66.0 9.4 115 46-193 46-164 (338)
174 1v5w_A DMC1, meiotic recombina 96.9 0.004 1.4E-07 63.4 11.1 54 142-195 204-274 (343)
175 4eun_A Thermoresistant glucoki 96.9 5E-05 1.7E-09 71.1 -3.5 34 47-86 30-63 (200)
176 1iy2_A ATP-dependent metallopr 96.9 6.4E-06 2.2E-10 81.4 -10.2 33 49-85 76-108 (278)
177 2dy1_A Elongation factor G; tr 96.8 0.00029 9.9E-09 78.3 0.9 124 49-197 12-138 (665)
178 3cf0_A Transitional endoplasmi 96.7 0.0034 1.2E-07 62.5 7.9 23 49-71 52-74 (301)
179 2z43_A DNA repair and recombin 96.6 0.007 2.4E-07 60.9 10.1 54 141-194 188-257 (324)
180 3a00_A Guanylate kinase, GMP k 96.5 0.00091 3.1E-08 61.7 2.4 24 48-71 3-26 (186)
181 1u94_A RECA protein, recombina 96.4 0.014 4.8E-07 59.7 10.7 22 47-68 64-85 (356)
182 1l8q_A Chromosomal replication 96.4 0.0097 3.3E-07 59.6 9.4 46 151-196 96-142 (324)
183 3nwj_A ATSK2; P loop, shikimat 96.3 0.00019 6.5E-09 70.0 -3.5 44 26-70 16-72 (250)
184 3bh0_A DNAB-like replicative h 96.3 0.024 8.2E-07 56.8 11.7 114 46-193 68-189 (315)
185 2qby_A CDC6 homolog 1, cell di 96.2 0.0012 3.9E-08 67.3 1.5 23 47-69 46-68 (386)
186 1ega_A Protein (GTP-binding pr 96.2 0.0033 1.1E-07 62.7 4.8 58 145-207 107-170 (301)
187 3kta_A Chromosome segregation 96.2 0.0019 6.5E-08 58.9 2.5 25 46-70 26-50 (182)
188 4e22_A Cytidylate kinase; P-lo 96.1 0.00067 2.3E-08 66.0 -1.2 54 47-102 28-96 (252)
189 1kgd_A CASK, peripheral plasma 96.0 0.0026 9E-08 58.2 2.8 35 47-82 6-40 (180)
190 3kl4_A SRP54, signal recogniti 96.0 0.013 4.5E-07 61.4 8.4 50 145-194 171-223 (433)
191 1lv7_A FTSH; alpha/beta domain 96.0 0.026 8.9E-07 54.3 10.0 22 49-70 48-69 (257)
192 2b8t_A Thymidine kinase; deoxy 96.0 0.0055 1.9E-07 58.5 5.0 53 153-210 89-150 (223)
193 1ypw_A Transitional endoplasmi 96.0 0.0053 1.8E-07 69.7 5.5 23 49-71 241-263 (806)
194 3h4m_A Proteasome-activating n 95.9 0.011 3.9E-07 57.7 6.8 49 147-195 104-166 (285)
195 2w58_A DNAI, primosome compone 95.9 0.0099 3.4E-07 55.0 6.0 50 152-201 114-165 (202)
196 1f2t_A RAD50 ABC-ATPase; DNA d 95.8 0.0049 1.7E-07 54.9 3.2 22 46-67 23-44 (149)
197 3lxx_A GTPase IMAP family memb 95.6 0.044 1.5E-06 52.1 9.6 42 152-193 111-154 (239)
198 4fcw_A Chaperone protein CLPB; 95.6 0.0048 1.6E-07 61.1 2.6 32 148-180 113-145 (311)
199 4ad8_A DNA repair protein RECN 95.6 0.014 4.9E-07 62.6 6.5 22 47-68 61-82 (517)
200 1zu4_A FTSY; GTPase, signal re 95.5 0.047 1.6E-06 54.9 9.8 37 47-85 106-142 (320)
201 2vp4_A Deoxynucleoside kinase; 95.5 0.003 1E-07 60.3 0.6 34 47-86 21-54 (230)
202 2q6t_A DNAB replication FORK h 95.4 0.039 1.3E-06 58.0 9.3 68 144-211 299-397 (444)
203 3t34_A Dynamin-related protein 95.4 0.011 3.7E-07 60.4 4.4 54 139-193 158-212 (360)
204 3d8b_A Fidgetin-like protein 1 95.3 0.065 2.2E-06 54.5 10.2 22 49-70 120-141 (357)
205 3bos_A Putative DNA replicatio 95.3 0.014 4.8E-07 54.8 4.9 45 152-196 103-149 (242)
206 2o5v_A DNA replication and rep 95.3 0.007 2.4E-07 62.0 2.8 22 47-68 27-48 (359)
207 3llm_A ATP-dependent RNA helic 95.3 0.045 1.5E-06 52.1 8.3 42 150-191 173-215 (235)
208 2j41_A Guanylate kinase; GMP, 95.3 0.0081 2.8E-07 55.5 2.9 24 47-70 7-30 (207)
209 2qz4_A Paraplegin; AAA+, SPG7, 95.0 0.089 3.1E-06 50.3 9.6 22 49-70 42-63 (262)
210 3tau_A Guanylate kinase, GMP k 95.0 0.011 3.9E-07 55.2 3.1 25 47-71 9-33 (208)
211 1kag_A SKI, shikimate kinase I 95.0 0.0096 3.3E-07 53.5 2.4 24 48-71 6-29 (173)
212 2qt1_A Nicotinamide riboside k 94.9 0.023 7.8E-07 52.8 4.7 25 47-71 22-46 (207)
213 3qks_A DNA double-strand break 94.8 0.014 4.8E-07 54.6 3.2 22 46-67 23-44 (203)
214 3uie_A Adenylyl-sulfate kinase 94.7 0.013 4.4E-07 54.4 2.7 24 47-70 26-49 (200)
215 3tqc_A Pantothenate kinase; bi 94.7 0.013 4.3E-07 59.1 2.6 23 48-70 94-116 (321)
216 1knq_A Gluconate kinase; ALFA/ 94.7 0.014 4.8E-07 52.6 2.6 24 47-70 9-32 (175)
217 1xwi_A SKD1 protein; VPS4B, AA 94.7 0.24 8.2E-06 49.6 12.0 21 50-70 49-69 (322)
218 3m6a_A ATP-dependent protease 94.5 0.012 4E-07 63.8 2.1 35 48-84 110-144 (543)
219 1w1w_A Structural maintenance 94.3 0.017 5.9E-07 60.4 2.8 25 46-70 26-50 (430)
220 2i1q_A DNA repair and recombin 94.1 0.27 9.3E-06 48.9 11.1 23 46-68 98-120 (322)
221 1rz3_A Hypothetical protein rb 94.1 0.02 7E-07 53.1 2.4 24 47-70 23-46 (201)
222 3io5_A Recombination and repai 94.0 0.035 1.2E-06 55.7 4.2 57 139-195 93-172 (333)
223 3vaa_A Shikimate kinase, SK; s 94.0 0.018 6.3E-07 53.3 1.9 42 23-70 8-49 (199)
224 3ney_A 55 kDa erythrocyte memb 93.7 0.029 9.9E-07 52.4 2.8 25 47-71 20-44 (197)
225 4b4t_J 26S protease regulatory 93.7 0.27 9.1E-06 50.9 10.2 51 146-196 234-298 (405)
226 2v1u_A Cell division control p 93.7 0.088 3E-06 53.2 6.5 22 48-69 46-67 (387)
227 1ixz_A ATP-dependent metallopr 93.5 0.026 9E-07 54.2 2.2 31 49-83 52-82 (254)
228 2wji_A Ferrous iron transport 93.5 0.036 1.2E-06 49.2 2.9 22 49-70 6-27 (165)
229 2if2_A Dephospho-COA kinase; a 93.5 0.026 8.9E-07 52.2 1.9 20 49-68 4-23 (204)
230 3lxw_A GTPase IMAP family memb 93.4 0.25 8.7E-06 47.3 9.0 21 50-70 25-45 (247)
231 1cke_A CK, MSSA, protein (cyti 93.4 0.034 1.2E-06 52.2 2.6 22 48-69 7-28 (227)
232 1xp8_A RECA protein, recombina 93.0 0.22 7.6E-06 50.9 8.3 22 47-68 75-96 (366)
233 4b4t_L 26S protease subunit RP 93.0 0.29 1E-05 51.2 9.3 73 144-223 265-354 (437)
234 3hu3_A Transitional endoplasmi 92.9 0.11 3.7E-06 55.4 6.0 22 49-70 241-262 (489)
235 4b4t_K 26S protease regulatory 92.9 0.33 1.1E-05 50.7 9.5 50 147-196 259-322 (428)
236 1mky_A Probable GTP-binding pr 92.9 0.062 2.1E-06 56.3 4.0 22 49-70 183-204 (439)
237 2qp9_X Vacuolar protein sortin 92.8 0.28 9.5E-06 49.8 8.7 21 50-70 88-108 (355)
238 2wjg_A FEOB, ferrous iron tran 92.7 0.054 1.8E-06 48.8 2.9 21 49-69 10-30 (188)
239 4b4t_H 26S protease regulatory 92.7 0.29 9.8E-06 51.5 8.7 54 143-196 292-359 (467)
240 3auy_A DNA double-strand break 92.7 0.081 2.8E-06 54.1 4.4 21 47-67 26-46 (371)
241 3cmw_A Protein RECA, recombina 92.6 0.5 1.7E-05 57.3 11.6 60 152-211 809-900 (1706)
242 1svm_A Large T antigen; AAA+ f 92.6 0.051 1.7E-06 55.9 2.8 24 47-70 170-193 (377)
243 4b4t_M 26S protease regulatory 92.5 0.27 9.3E-06 51.4 8.2 72 145-223 266-354 (434)
244 3eie_A Vacuolar protein sortin 92.4 0.3 1E-05 48.6 8.2 22 49-70 54-75 (322)
245 3vfd_A Spastin; ATPase, microt 92.3 0.68 2.3E-05 47.3 10.9 22 49-70 151-172 (389)
246 3co5_A Putative two-component 92.3 0.33 1.1E-05 42.1 7.4 42 153-195 75-116 (143)
247 2zej_A Dardarin, leucine-rich 92.2 0.064 2.2E-06 48.5 2.7 20 50-69 6-25 (184)
248 2gj8_A MNME, tRNA modification 92.1 0.069 2.4E-06 47.9 2.7 21 49-69 7-27 (172)
249 2www_A Methylmalonic aciduria 92.0 0.064 2.2E-06 54.5 2.6 23 47-69 75-97 (349)
250 3t61_A Gluconokinase; PSI-biol 91.9 0.062 2.1E-06 49.6 2.3 23 48-70 20-42 (202)
251 3cr8_A Sulfate adenylyltranfer 91.7 0.059 2E-06 58.3 2.1 24 47-70 370-393 (552)
252 2qor_A Guanylate kinase; phosp 91.6 0.086 2.9E-06 48.8 2.8 25 47-71 13-37 (204)
253 1np6_A Molybdopterin-guanine d 91.3 0.09 3.1E-06 47.9 2.6 22 48-69 8-29 (174)
254 2qag_A Septin-2, protein NEDD5 91.0 0.046 1.6E-06 55.9 0.2 41 27-69 17-60 (361)
255 4b4t_I 26S protease regulatory 90.9 0.81 2.8E-05 47.6 9.6 72 145-223 267-355 (437)
256 3kb2_A SPBC2 prophage-derived 90.8 0.13 4.5E-06 45.5 3.2 21 49-69 4-24 (173)
257 2pez_A Bifunctional 3'-phospho 90.6 0.12 3.9E-06 46.7 2.6 23 48-70 7-29 (179)
258 3k53_A Ferrous iron transport 90.6 0.11 3.8E-06 50.5 2.6 21 50-70 7-27 (271)
259 2zan_A Vacuolar protein sortin 90.5 0.59 2E-05 48.9 8.3 22 49-70 170-191 (444)
260 2ce2_X GTPase HRAS; signaling 90.3 0.11 3.6E-06 45.2 2.0 20 50-69 7-26 (166)
261 1q57_A DNA primase/helicase; d 90.0 0.99 3.4E-05 47.9 9.7 68 143-211 342-441 (503)
262 3u61_B DNA polymerase accessor 89.9 1.3 4.4E-05 43.7 9.9 42 153-196 105-147 (324)
263 4dcu_A GTP-binding protein ENG 89.9 0.18 6.2E-06 53.0 3.7 53 140-196 89-142 (456)
264 2erx_A GTP-binding protein DI- 89.8 0.16 5.6E-06 44.4 2.9 20 50-69 7-26 (172)
265 3lw7_A Adenylate kinase relate 89.6 0.18 6.2E-06 44.4 3.1 19 48-66 3-21 (179)
266 1z2a_A RAS-related protein RAB 89.6 0.14 4.7E-06 44.8 2.2 20 50-69 9-28 (168)
267 2ged_A SR-beta, signal recogni 89.6 0.13 4.6E-06 46.4 2.2 22 49-70 51-72 (193)
268 3cmu_A Protein RECA, recombina 89.5 0.9 3.1E-05 55.9 9.7 60 152-211 460-551 (2050)
269 1qhx_A CPT, protein (chloramph 89.4 0.2 7E-06 44.7 3.2 24 48-71 5-28 (178)
270 2p67_A LAO/AO transport system 89.3 0.15 5E-06 51.6 2.4 22 48-69 58-79 (341)
271 3cm0_A Adenylate kinase; ATP-b 89.3 0.18 6E-06 45.5 2.7 21 49-69 7-27 (186)
272 1via_A Shikimate kinase; struc 89.3 0.18 6.1E-06 45.2 2.7 22 49-70 7-28 (175)
273 2yvu_A Probable adenylyl-sulfa 89.2 0.21 7.2E-06 45.2 3.2 23 48-70 15-37 (186)
274 3q72_A GTP-binding protein RAD 89.2 0.16 5.6E-06 44.4 2.4 21 50-70 6-26 (166)
275 2dyk_A GTP-binding protein; GT 89.1 0.16 5.4E-06 44.1 2.2 21 50-70 5-25 (161)
276 2nzj_A GTP-binding protein REM 89.0 0.2 7E-06 44.0 2.9 21 50-70 8-28 (175)
277 1m2o_B GTP-binding protein SAR 88.9 0.34 1.2E-05 43.9 4.4 20 50-69 27-46 (190)
278 1u8z_A RAS-related protein RAL 88.9 0.17 5.7E-06 44.1 2.2 20 50-69 8-27 (168)
279 3bgw_A DNAB-like replicative h 88.8 1.8 6.2E-05 45.2 10.4 50 139-193 266-318 (444)
280 1ly1_A Polynucleotide kinase; 88.8 0.24 8.2E-06 44.2 3.2 20 49-68 5-24 (181)
281 3cf2_A TER ATPase, transitiona 88.8 0.57 2E-05 52.8 6.9 22 50-71 242-263 (806)
282 2jaq_A Deoxyguanosine kinase; 88.8 0.2 6.9E-06 45.7 2.7 21 50-70 4-24 (205)
283 3q85_A GTP-binding protein REM 88.7 0.23 7.7E-06 43.5 2.9 20 50-69 6-25 (169)
284 1svi_A GTP-binding protein YSX 88.6 0.2 6.7E-06 45.3 2.6 21 50-70 27-47 (195)
285 3tw8_B RAS-related protein RAB 88.6 0.2 6.8E-06 44.3 2.5 20 50-69 13-32 (181)
286 3pqc_A Probable GTP-binding pr 88.5 0.2 7E-06 44.9 2.6 21 50-70 27-47 (195)
287 1g5t_A COB(I)alamin adenosyltr 88.4 0.32 1.1E-05 45.2 3.9 70 141-211 106-179 (196)
288 2lkc_A Translation initiation 88.4 0.24 8.2E-06 43.8 2.9 20 50-69 12-31 (178)
289 2ze6_A Isopentenyl transferase 88.4 0.25 8.5E-06 47.6 3.2 23 48-70 3-25 (253)
290 1ex7_A Guanylate kinase; subst 88.3 0.21 7.1E-06 46.0 2.5 22 50-71 5-26 (186)
291 3cmw_A Protein RECA, recombina 88.3 1.4 4.9E-05 53.4 10.3 60 152-211 460-551 (1706)
292 1fzq_A ADP-ribosylation factor 88.3 0.2 6.9E-06 45.0 2.4 21 50-70 20-40 (181)
293 2cxx_A Probable GTP-binding pr 88.3 0.21 7.3E-06 44.6 2.5 20 50-69 5-24 (190)
294 1z0j_A RAB-22, RAS-related pro 88.2 0.19 6.6E-06 43.9 2.2 21 50-70 10-30 (170)
295 3con_A GTPase NRAS; structural 88.2 0.19 6.6E-06 45.2 2.2 20 50-69 25-44 (190)
296 1xjc_A MOBB protein homolog; s 88.2 0.28 9.6E-06 44.5 3.2 22 48-69 6-27 (169)
297 1ek0_A Protein (GTP-binding pr 88.1 0.2 6.9E-06 43.7 2.2 20 50-69 7-26 (170)
298 1f6b_A SAR1; gtpases, N-termin 88.0 0.19 6.4E-06 46.1 2.0 20 50-69 29-48 (198)
299 1kao_A RAP2A; GTP-binding prot 87.9 0.21 7.2E-06 43.3 2.2 20 50-69 7-26 (167)
300 1z08_A RAS-related protein RAB 87.9 0.21 7.1E-06 43.8 2.1 20 50-69 10-29 (170)
301 1ky3_A GTP-binding protein YPT 87.9 0.21 7.1E-06 44.2 2.2 20 50-69 12-31 (182)
302 1c1y_A RAS-related protein RAP 87.8 0.21 7.3E-06 43.4 2.2 20 50-69 7-26 (167)
303 3b1v_A Ferrous iron uptake tra 87.8 0.26 8.8E-06 48.2 2.9 20 50-69 7-26 (272)
304 1wms_A RAB-9, RAB9, RAS-relate 87.7 0.22 7.4E-06 44.1 2.2 20 50-69 11-30 (177)
305 3iij_A Coilin-interacting nucl 87.7 0.27 9.1E-06 44.2 2.8 21 49-69 14-34 (180)
306 1kht_A Adenylate kinase; phosp 87.7 0.3 1E-05 43.9 3.2 21 49-69 6-26 (192)
307 2fn4_A P23, RAS-related protei 87.6 0.21 7.1E-06 44.2 1.9 20 50-69 13-32 (181)
308 1g16_A RAS-related protein SEC 87.6 0.21 7.2E-06 43.7 2.0 21 50-70 7-27 (170)
309 1yrb_A ATP(GTP)binding protein 87.3 0.36 1.2E-05 46.1 3.6 21 47-67 15-35 (262)
310 1vht_A Dephospho-COA kinase; s 87.2 0.33 1.1E-05 45.2 3.2 21 48-68 6-26 (218)
311 1m7g_A Adenylylsulfate kinase; 87.2 0.28 9.4E-06 45.6 2.7 23 48-70 27-49 (211)
312 1r2q_A RAS-related protein RAB 87.1 0.25 8.5E-06 43.1 2.2 20 50-69 10-29 (170)
313 2hxs_A RAB-26, RAS-related pro 87.1 0.28 9.6E-06 43.3 2.6 20 50-69 10-29 (178)
314 3trf_A Shikimate kinase, SK; a 87.1 0.3 1E-05 44.0 2.8 21 49-69 8-28 (185)
315 3clv_A RAB5 protein, putative; 87.0 0.25 8.5E-06 44.5 2.2 20 50-69 11-30 (208)
316 1gtv_A TMK, thymidylate kinase 87.0 0.19 6.5E-06 46.4 1.3 21 50-70 4-24 (214)
317 4dsu_A GTPase KRAS, isoform 2B 86.9 0.25 8.7E-06 44.0 2.2 20 50-69 8-27 (189)
318 2ohf_A Protein OLA1, GTP-bindi 86.8 0.3 1E-05 50.5 2.8 21 49-69 25-45 (396)
319 1moz_A ARL1, ADP-ribosylation 86.8 0.2 6.9E-06 44.6 1.4 20 50-69 22-41 (183)
320 3ice_A Transcription terminati 86.8 0.052 1.8E-06 55.9 -2.8 42 27-69 133-197 (422)
321 3dm5_A SRP54, signal recogniti 86.8 3.8 0.00013 42.8 11.3 22 47-68 101-122 (443)
322 1z0f_A RAB14, member RAS oncog 86.7 0.27 9.2E-06 43.4 2.2 20 50-69 19-38 (179)
323 2rhm_A Putative kinase; P-loop 86.7 0.35 1.2E-05 43.7 3.0 22 48-69 7-28 (193)
324 1upt_A ARL1, ADP-ribosylation 86.7 0.27 9.3E-06 43.0 2.2 20 50-69 11-30 (171)
325 2a9k_A RAS-related protein RAL 86.7 0.27 9.3E-06 43.7 2.2 20 50-69 22-41 (187)
326 3bc1_A RAS-related protein RAB 86.5 0.28 9.5E-06 43.9 2.2 20 50-69 15-34 (195)
327 2p5t_B PEZT; postsegregational 86.4 0.28 9.7E-06 47.1 2.3 24 48-71 34-57 (253)
328 3r20_A Cytidylate kinase; stru 86.4 0.39 1.3E-05 45.9 3.2 22 48-69 11-32 (233)
329 2oil_A CATX-8, RAS-related pro 86.4 0.28 9.7E-06 44.2 2.2 20 50-69 29-48 (193)
330 3t1o_A Gliding protein MGLA; G 86.3 0.29 9.8E-06 44.0 2.2 22 50-71 18-39 (198)
331 1ksh_A ARF-like protein 2; sma 86.3 0.35 1.2E-05 43.2 2.7 21 50-70 22-42 (186)
332 1gvn_B Zeta; postsegregational 86.2 0.34 1.2E-05 47.6 2.9 23 48-70 35-57 (287)
333 3iby_A Ferrous iron transport 86.2 0.33 1.1E-05 46.8 2.7 21 50-70 5-25 (256)
334 1r8s_A ADP-ribosylation factor 86.2 0.3 1E-05 42.5 2.2 19 50-68 4-22 (164)
335 2efe_B Small GTP-binding prote 86.1 0.29 1E-05 43.3 2.1 20 50-69 16-35 (181)
336 1sxj_C Activator 1 40 kDa subu 86.1 0.27 9.4E-06 49.2 2.1 22 49-70 49-70 (340)
337 1y63_A LMAJ004144AAA protein; 86.1 0.36 1.2E-05 43.7 2.8 22 48-69 12-33 (184)
338 2y8e_A RAB-protein 6, GH09086P 86.1 0.28 9.7E-06 43.2 2.0 20 50-69 18-37 (179)
339 1nrj_B SR-beta, signal recogni 86.0 0.3 1E-05 45.1 2.2 21 50-70 16-36 (218)
340 1nks_A Adenylate kinase; therm 86.0 0.39 1.3E-05 43.2 3.0 20 50-69 5-24 (194)
341 1q3t_A Cytidylate kinase; nucl 86.0 0.34 1.2E-05 45.8 2.6 22 48-69 18-39 (236)
342 1zbd_A Rabphilin-3A; G protein 86.0 0.38 1.3E-05 43.7 2.9 21 50-70 12-32 (203)
343 4dhe_A Probable GTP-binding pr 85.8 0.25 8.5E-06 45.7 1.5 21 50-70 33-53 (223)
344 2g6b_A RAS-related protein RAB 85.8 0.32 1.1E-05 43.0 2.2 20 50-69 14-33 (180)
345 2bme_A RAB4A, RAS-related prot 85.8 0.3 1E-05 43.6 2.0 20 50-69 14-33 (186)
346 3t5d_A Septin-7; GTP-binding p 85.7 0.32 1.1E-05 47.2 2.3 20 50-69 12-31 (274)
347 1vg8_A RAS-related protein RAB 85.7 0.32 1.1E-05 44.3 2.2 20 50-69 12-31 (207)
348 3cbq_A GTP-binding protein REM 85.6 0.31 1.1E-05 44.5 2.1 20 50-69 27-46 (195)
349 2bov_A RAla, RAS-related prote 85.6 0.33 1.1E-05 44.1 2.2 20 50-69 18-37 (206)
350 2xtp_A GTPase IMAP family memb 85.5 0.37 1.3E-05 46.1 2.6 21 50-70 26-46 (260)
351 2dhr_A FTSH; AAA+ protein, hex 85.5 0.3 1E-05 52.1 2.1 32 49-84 67-98 (499)
352 1uf9_A TT1252 protein; P-loop, 85.5 0.43 1.5E-05 43.4 3.0 22 48-69 10-31 (203)
353 2il1_A RAB12; G-protein, GDP, 85.5 0.38 1.3E-05 43.5 2.6 20 50-69 30-49 (192)
354 1wf3_A GTP-binding protein; GT 85.3 0.41 1.4E-05 47.4 2.9 22 49-70 10-31 (301)
355 2o52_A RAS-related protein RAB 85.3 0.4 1.4E-05 43.7 2.7 20 50-69 29-48 (200)
356 2f7s_A C25KG, RAS-related prot 85.3 1 3.4E-05 41.4 5.4 21 50-70 29-49 (217)
357 2gf0_A GTP-binding protein DI- 85.2 0.32 1.1E-05 43.9 1.9 20 50-69 12-31 (199)
358 3kkq_A RAS-related protein M-R 85.2 0.35 1.2E-05 43.0 2.2 20 50-69 22-41 (183)
359 2gf9_A RAS-related protein RAB 85.1 0.36 1.2E-05 43.4 2.2 20 50-69 26-45 (189)
360 1m7b_A RND3/RHOE small GTP-bin 85.0 0.34 1.1E-05 43.5 2.0 20 50-69 11-30 (184)
361 3a1s_A Iron(II) transport prot 85.0 0.44 1.5E-05 46.0 2.9 21 50-70 9-29 (258)
362 1zj6_A ADP-ribosylation factor 85.0 0.43 1.5E-05 42.8 2.7 21 50-70 20-40 (187)
363 3tkl_A RAS-related protein RAB 84.9 0.37 1.3E-05 43.4 2.2 20 50-69 20-39 (196)
364 1e6c_A Shikimate kinase; phosp 84.9 0.45 1.5E-05 42.1 2.8 21 49-69 5-25 (173)
365 3fb4_A Adenylate kinase; psych 84.9 0.44 1.5E-05 44.1 2.8 20 50-69 4-23 (216)
366 3i8s_A Ferrous iron transport 84.8 0.41 1.4E-05 46.6 2.6 21 50-70 7-27 (274)
367 2h57_A ADP-ribosylation factor 84.8 0.33 1.1E-05 43.7 1.8 21 50-70 25-45 (190)
368 2fg5_A RAB-22B, RAS-related pr 84.7 0.35 1.2E-05 43.7 1.9 20 50-69 27-46 (192)
369 3oes_A GTPase rhebl1; small GT 84.7 0.35 1.2E-05 44.1 2.0 20 50-69 28-47 (201)
370 2z0h_A DTMP kinase, thymidylat 84.7 0.54 1.9E-05 42.5 3.2 20 50-69 4-23 (197)
371 2qu8_A Putative nucleolar GTP- 84.6 0.45 1.5E-05 44.5 2.7 21 50-70 33-53 (228)
372 3ihw_A Centg3; RAS, centaurin, 84.6 0.38 1.3E-05 43.4 2.1 19 50-68 24-42 (184)
373 2h17_A ADP-ribosylation factor 84.6 0.4 1.4E-05 42.8 2.3 21 50-70 25-45 (181)
374 1mh1_A RAC1; GTP-binding, GTPa 84.6 0.39 1.3E-05 42.6 2.2 19 50-68 9-27 (186)
375 2a5j_A RAS-related protein RAB 84.5 0.4 1.4E-05 43.3 2.2 20 50-69 25-44 (191)
376 1tev_A UMP-CMP kinase; ploop, 84.4 0.56 1.9E-05 42.2 3.2 21 49-69 6-26 (196)
377 2plr_A DTMP kinase, probable t 84.4 0.56 1.9E-05 42.9 3.2 21 49-69 7-27 (213)
378 4bas_A ADP-ribosylation factor 84.4 0.46 1.6E-05 42.8 2.6 20 50-69 21-40 (199)
379 2q3h_A RAS homolog gene family 84.3 0.52 1.8E-05 42.7 2.9 20 50-69 24-43 (201)
380 4eaq_A DTMP kinase, thymidylat 84.3 0.55 1.9E-05 44.5 3.2 23 48-70 28-50 (229)
381 2wsm_A Hydrogenase expression/ 84.3 0.43 1.5E-05 44.2 2.4 22 48-69 32-53 (221)
382 1jwy_B Dynamin A GTPase domain 84.3 0.44 1.5E-05 46.9 2.6 22 49-70 27-48 (315)
383 3bwd_D RAC-like GTP-binding pr 84.2 0.42 1.4E-05 42.3 2.2 21 50-70 12-32 (182)
384 3dl0_A Adenylate kinase; phosp 84.2 0.49 1.7E-05 43.8 2.8 20 50-69 4-23 (216)
385 2v54_A DTMP kinase, thymidylat 84.2 0.5 1.7E-05 43.1 2.7 22 49-70 7-28 (204)
386 3ake_A Cytidylate kinase; CMP 84.1 0.59 2E-05 42.7 3.2 22 48-69 4-25 (208)
387 1jbk_A CLPB protein; beta barr 84.1 0.51 1.7E-05 41.8 2.7 21 49-69 46-66 (195)
388 4ag6_A VIRB4 ATPase, type IV s 84.0 0.5 1.7E-05 48.4 3.0 19 49-67 38-56 (392)
389 3llu_A RAS-related GTP-binding 84.0 0.49 1.7E-05 42.9 2.6 21 50-70 24-44 (196)
390 3dz8_A RAS-related protein RAB 84.0 0.39 1.4E-05 43.3 2.0 21 50-70 27-47 (191)
391 2bcg_Y Protein YP2, GTP-bindin 84.0 0.4 1.4E-05 43.8 2.0 20 50-69 12-31 (206)
392 3def_A T7I23.11 protein; chlor 84.0 0.48 1.6E-05 45.6 2.6 21 50-70 40-60 (262)
393 2j1l_A RHO-related GTP-binding 84.0 0.5 1.7E-05 43.7 2.7 20 50-69 38-57 (214)
394 1z06_A RAS-related protein RAB 83.9 0.43 1.5E-05 42.9 2.2 20 50-69 24-43 (189)
395 2atv_A RERG, RAS-like estrogen 83.9 0.43 1.5E-05 43.2 2.2 20 50-69 32-51 (196)
396 2p5s_A RAS and EF-hand domain 83.9 0.44 1.5E-05 43.4 2.2 21 50-70 32-52 (199)
397 1zd9_A ADP-ribosylation factor 83.8 0.44 1.5E-05 42.9 2.2 20 50-69 26-45 (188)
398 1x3s_A RAS-related protein RAB 83.8 0.44 1.5E-05 42.7 2.2 20 50-69 19-38 (195)
399 2pt5_A Shikimate kinase, SK; a 83.8 0.54 1.9E-05 41.4 2.7 20 50-69 4-23 (168)
400 3cmu_A Protein RECA, recombina 83.8 2.7 9.4E-05 51.8 9.6 24 46-69 732-755 (2050)
401 3t5g_A GTP-binding protein RHE 83.6 0.42 1.4E-05 42.4 2.0 19 50-68 10-28 (181)
402 3reg_A RHO-like small GTPase; 83.4 0.47 1.6E-05 42.8 2.2 20 50-69 27-46 (194)
403 2dby_A GTP-binding protein; GD 83.4 0.43 1.5E-05 48.8 2.1 20 50-69 5-24 (368)
404 1zd8_A GTP:AMP phosphotransfer 83.3 0.51 1.8E-05 44.2 2.5 22 49-70 10-31 (227)
405 1h65_A Chloroplast outer envel 83.3 0.53 1.8E-05 45.5 2.7 21 50-70 43-63 (270)
406 2pbr_A DTMP kinase, thymidylat 83.3 0.67 2.3E-05 41.7 3.2 20 50-69 4-23 (195)
407 2c95_A Adenylate kinase 1; tra 83.2 0.62 2.1E-05 42.1 3.0 22 48-69 11-32 (196)
408 3cph_A RAS-related protein SEC 83.2 0.47 1.6E-05 43.3 2.2 20 50-69 24-43 (213)
409 2fv8_A H6, RHO-related GTP-bin 83.0 0.45 1.5E-05 43.6 1.9 20 50-69 29-48 (207)
410 3iev_A GTP-binding protein ERA 83.0 0.66 2.3E-05 45.9 3.3 24 47-70 11-34 (308)
411 2iwr_A Centaurin gamma 1; ANK 83.0 0.39 1.3E-05 42.5 1.5 20 50-69 11-30 (178)
412 2iyv_A Shikimate kinase, SK; t 82.9 0.61 2.1E-05 41.9 2.8 21 49-69 5-25 (184)
413 3c5c_A RAS-like protein 12; GD 82.9 0.5 1.7E-05 42.6 2.2 20 50-69 25-44 (187)
414 2b6h_A ADP-ribosylation factor 82.9 0.52 1.8E-05 42.7 2.3 21 50-70 33-53 (192)
415 2aka_B Dynamin-1; fusion prote 82.9 0.54 1.8E-05 45.8 2.5 22 49-70 29-50 (299)
416 1zak_A Adenylate kinase; ATP:A 82.8 0.56 1.9E-05 43.7 2.5 20 50-69 9-28 (222)
417 2fh5_B SR-beta, signal recogni 82.8 0.51 1.7E-05 43.3 2.2 20 50-69 11-30 (214)
418 2ew1_A RAS-related protein RAB 82.7 0.48 1.6E-05 43.6 2.0 20 50-69 30-49 (201)
419 2bwj_A Adenylate kinase 5; pho 82.7 0.67 2.3E-05 41.9 3.0 22 48-69 14-35 (199)
420 2ga8_A Hypothetical 39.9 kDa p 82.7 0.49 1.7E-05 48.1 2.2 21 49-69 27-47 (359)
421 2cjw_A GTP-binding protein GEM 82.5 0.53 1.8E-05 42.8 2.2 19 50-68 10-28 (192)
422 1gwn_A RHO-related GTP-binding 82.5 0.49 1.7E-05 43.6 2.0 20 50-69 32-51 (205)
423 1qf9_A UMP/CMP kinase, protein 82.3 0.72 2.5E-05 41.3 3.0 22 48-69 8-29 (194)
424 1njg_A DNA polymerase III subu 82.2 0.79 2.7E-05 42.1 3.3 43 152-196 125-167 (250)
425 1j8m_F SRP54, signal recogniti 82.2 0.47 1.6E-05 47.0 1.8 23 47-69 99-121 (297)
426 2fu5_C RAS-related protein RAB 82.2 0.42 1.4E-05 42.5 1.3 20 50-69 12-31 (183)
427 2cdn_A Adenylate kinase; phosp 82.1 0.67 2.3E-05 42.4 2.7 22 48-69 22-43 (201)
428 2wwf_A Thymidilate kinase, put 82.0 0.74 2.5E-05 42.2 3.0 22 48-69 12-33 (212)
429 1aky_A Adenylate kinase; ATP:A 81.9 0.69 2.3E-05 43.0 2.7 21 49-69 7-27 (220)
430 2gco_A H9, RHO-related GTP-bin 81.7 0.55 1.9E-05 42.8 2.0 20 50-69 29-48 (201)
431 2xb4_A Adenylate kinase; ATP-b 81.7 0.69 2.4E-05 43.3 2.7 20 50-69 4-23 (223)
432 2vli_A Antibiotic resistance p 81.6 0.58 2E-05 41.8 2.1 22 48-69 7-28 (183)
433 1jal_A YCHF protein; nucleotid 81.6 0.56 1.9E-05 47.8 2.2 21 49-69 5-25 (363)
434 3a4m_A L-seryl-tRNA(SEC) kinas 81.6 0.8 2.7E-05 44.0 3.2 21 49-69 7-27 (260)
435 1ukz_A Uridylate kinase; trans 81.3 0.87 3E-05 41.5 3.2 22 48-69 17-38 (203)
436 2hf9_A Probable hydrogenase ni 81.2 0.69 2.4E-05 42.8 2.5 21 49-69 41-61 (226)
437 1e4v_A Adenylate kinase; trans 81.0 0.72 2.5E-05 42.7 2.5 20 50-69 4-23 (214)
438 2p65_A Hypothetical protein PF 81.0 0.63 2.2E-05 41.2 2.1 20 50-69 47-66 (187)
439 1nn5_A Similar to deoxythymidy 80.9 0.84 2.9E-05 41.8 3.0 21 49-69 12-32 (215)
440 2atx_A Small GTP binding prote 80.7 0.62 2.1E-05 41.9 1.9 20 50-69 22-41 (194)
441 2ffh_A Protein (FFH); SRP54, s 80.6 0.72 2.5E-05 48.1 2.6 23 47-69 99-121 (425)
442 2x77_A ADP-ribosylation factor 80.2 0.56 1.9E-05 42.0 1.4 20 50-69 26-45 (189)
443 2g3y_A GTP-binding protein GEM 80.0 0.92 3.1E-05 42.3 2.9 20 50-69 41-60 (211)
444 4djt_A GTP-binding nuclear pro 79.8 0.41 1.4E-05 44.2 0.3 20 50-69 15-34 (218)
445 1zuh_A Shikimate kinase; alpha 79.7 1.1 3.8E-05 39.5 3.3 21 49-69 10-30 (168)
446 2hup_A RAS-related protein RAB 79.6 0.7 2.4E-05 42.2 1.9 20 50-69 33-52 (201)
447 2yc2_C IFT27, small RAB-relate 79.6 0.41 1.4E-05 43.4 0.3 20 50-69 24-43 (208)
448 1zcb_A G alpha I/13; GTP-bindi 79.5 0.84 2.9E-05 46.5 2.6 17 50-66 37-53 (362)
449 3cnl_A YLQF, putative uncharac 79.5 0.87 3E-05 44.1 2.7 23 48-70 101-123 (262)
450 3tlx_A Adenylate kinase 2; str 79.5 0.9 3.1E-05 43.2 2.7 21 49-69 32-52 (243)
451 1uj2_A Uridine-cytidine kinase 79.2 1.1 3.7E-05 42.8 3.2 22 48-69 24-45 (252)
452 2chg_A Replication factor C sm 79.1 0.98 3.3E-05 41.0 2.8 42 152-195 101-142 (226)
453 3cpj_B GTP-binding protein YPT 79.1 0.8 2.7E-05 42.5 2.2 20 50-69 17-36 (223)
454 1ltq_A Polynucleotide kinase; 78.7 1.1 3.8E-05 43.6 3.2 22 48-69 4-25 (301)
455 3q3j_B RHO-related GTP-binding 78.6 0.85 2.9E-05 42.2 2.2 20 50-69 31-50 (214)
456 2j0v_A RAC-like GTP-binding pr 78.2 0.83 2.8E-05 41.8 2.0 20 50-69 13-32 (212)
457 4gzl_A RAS-related C3 botulinu 78.2 0.83 2.8E-05 41.8 2.0 19 50-68 34-52 (204)
458 3be4_A Adenylate kinase; malar 77.8 1 3.5E-05 41.8 2.5 20 50-69 9-28 (217)
459 2grj_A Dephospho-COA kinase; T 77.7 1.3 4.6E-05 40.6 3.2 22 48-69 14-35 (192)
460 1sxj_D Activator 1 41 kDa subu 77.4 0.92 3.2E-05 45.1 2.2 42 153-196 133-174 (353)
461 3p32_A Probable GTPase RV1496/ 77.2 1.3 4.4E-05 44.8 3.2 22 48-69 81-102 (355)
462 2f6r_A COA synthase, bifunctio 77.1 1.2 4.2E-05 43.4 3.0 21 48-68 77-97 (281)
463 1ak2_A Adenylate kinase isoenz 76.7 1.2 4.2E-05 41.8 2.7 20 50-69 20-39 (233)
464 3d3q_A TRNA delta(2)-isopenten 76.3 1.4 4.9E-05 44.3 3.2 24 48-71 9-32 (340)
465 3umf_A Adenylate kinase; rossm 76.2 1.5 5.2E-05 41.2 3.2 22 48-69 31-52 (217)
466 2r62_A Cell division protease 75.9 1 3.6E-05 43.0 2.1 20 50-69 48-67 (268)
467 1lw7_A Transcriptional regulat 75.7 1.7 5.8E-05 44.0 3.6 38 138-181 299-341 (365)
468 3n70_A Transport activator; si 75.5 1.5 5.2E-05 37.9 2.8 41 153-195 76-116 (145)
469 1wxq_A GTP-binding protein; st 75.4 1.3 4.4E-05 45.7 2.7 20 50-69 4-23 (397)
470 1a7j_A Phosphoribulokinase; tr 75.3 0.91 3.1E-05 44.7 1.4 22 48-69 7-28 (290)
471 2xtz_A Guanine nucleotide-bind 75.2 1.3 4.5E-05 44.9 2.6 18 50-67 13-30 (354)
472 3sr0_A Adenylate kinase; phosp 74.7 1.8 6.1E-05 40.3 3.2 20 50-69 4-23 (206)
473 3th5_A RAS-related C3 botulinu 76.5 0.63 2.2E-05 42.4 0.0 20 50-69 34-53 (204)
474 3r7w_A Gtpase1, GTP-binding pr 74.0 1.6 5.5E-05 43.1 2.8 20 50-69 7-26 (307)
475 1puj_A YLQF, conserved hypothe 73.9 1.5 5.2E-05 42.8 2.7 22 49-70 123-144 (282)
476 1d2n_A N-ethylmaleimide-sensit 73.7 1.6 5.5E-05 41.9 2.8 20 50-69 68-87 (272)
477 4a9a_A Ribosome-interacting GT 73.4 3.4 0.00012 42.2 5.2 20 50-69 76-95 (376)
478 3t15_A Ribulose bisphosphate c 73.1 1.6 5.3E-05 42.8 2.5 21 50-70 40-60 (293)
479 2x2e_A Dynamin-1; nitration, h 73.0 1.2 4E-05 45.0 1.6 21 49-69 34-54 (353)
480 3crm_A TRNA delta(2)-isopenten 72.6 2 6.9E-05 42.9 3.2 24 48-71 7-30 (323)
481 3zvl_A Bifunctional polynucleo 72.2 1.9 6.6E-05 44.6 3.1 24 47-70 259-282 (416)
482 3sjy_A Translation initiation 72.1 1.8 6.3E-05 44.4 2.9 20 50-69 12-31 (403)
483 3syl_A Protein CBBX; photosynt 71.8 1.7 5.9E-05 42.3 2.5 21 49-69 70-90 (309)
484 4hlc_A DTMP kinase, thymidylat 71.8 1.5 5.3E-05 40.6 2.0 18 53-70 9-26 (205)
485 3gj0_A GTP-binding nuclear pro 71.8 1.1 3.7E-05 41.4 0.9 19 50-68 19-38 (221)
486 1ofh_A ATP-dependent HSL prote 71.4 1.9 6.6E-05 41.7 2.7 21 50-70 54-74 (310)
487 2h92_A Cytidylate kinase; ross 71.1 2.1 7.1E-05 39.5 2.7 22 49-70 6-27 (219)
488 3l0i_B RAS-related protein RAB 70.9 0.48 1.6E-05 43.1 -1.7 21 50-70 37-57 (199)
489 3gmt_A Adenylate kinase; ssgci 70.8 2.1 7.2E-05 40.6 2.7 20 50-69 12-31 (230)
490 3exa_A TRNA delta(2)-isopenten 70.6 2.4 8.2E-05 42.3 3.2 24 48-71 5-28 (322)
491 2orv_A Thymidine kinase; TP4A 70.6 7.7 0.00026 36.8 6.5 62 152-221 89-159 (234)
492 2qpt_A EH domain-containing pr 70.3 1.9 6.4E-05 46.4 2.5 23 48-70 67-89 (550)
493 3hjn_A DTMP kinase, thymidylat 70.3 1.8 6.1E-05 39.9 2.1 17 53-69 7-23 (197)
494 3dpu_A RAB family protein; roc 70.0 2.2 7.4E-05 45.6 2.9 21 50-70 45-65 (535)
495 4edh_A DTMP kinase, thymidylat 69.9 1.8 6.2E-05 40.4 2.1 19 51-69 11-29 (213)
496 2qen_A Walker-type ATPase; unk 69.9 2.6 8.7E-05 41.5 3.3 24 47-70 32-55 (350)
497 3ohm_A Guanine nucleotide-bind 69.7 2.1 7.3E-05 42.8 2.6 17 50-66 11-27 (327)
498 3geh_A MNME, tRNA modification 69.7 1.7 5.7E-05 45.8 1.9 20 50-69 228-247 (462)
499 2ocp_A DGK, deoxyguanosine kin 69.6 2.1 7.3E-05 40.3 2.5 19 52-70 8-26 (241)
500 2qby_B CDC6 homolog 3, cell di 69.6 2 7E-05 43.0 2.5 22 48-69 47-68 (384)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.6e-38 Score=327.87 Aligned_cols=194 Identities=21% Similarity=0.266 Sum_probs=167.2
Q ss_pred ceEEEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-----
Q 042733 25 PHYISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----- 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----- 88 (531)
...|+++||+++|+.+. ..+|+|||+.+.+| |||||||+|+|+|..++ .+|+|.++|.+...
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p--~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECSSCCHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC--CceEEEECCEECCcCCHHH
Confidence 34689999999997432 36899999888777 99999999999998664 47999999987532
Q ss_pred -hhhcceEEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHh
Q 042733 89 -ETFARILGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFV 151 (531)
Q Consensus 89 -~~~~~~igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~ 151 (531)
...++.+||++|++.+++.+||+|+. .+..++++++++.+||.+..++.+ ||||||+|||||+
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~ 179 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALA 179 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTT
T ss_pred HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHh
Confidence 12467899999999999999999982 234567889999999998877766 9999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
.+|++|||||||+|||+.++..++++|++++++ |.|||++||+++ .+...|||+++|++ |+++..|+++
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~iv~~g~~~ 249 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELIEQDTVS 249 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEECCBHH
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999999999999865 999999999987 57788999999996 9999999864
No 2
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.7e-38 Score=314.59 Aligned_cols=191 Identities=19% Similarity=0.334 Sum_probs=158.3
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc--h---hhhc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK--Q---ETFA 92 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~--~---~~~~ 92 (531)
.|+++||+++|+. ...+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. . ..++
T Consensus 7 ~l~i~~ls~~y~~-~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p--~~G~I~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 7 ILKVEELNYNYSD-GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP--SSGRILFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp EEEEEEEEEECTT-SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECCCSHHHHHHHH
T ss_pred EEEEEEEEEEECC-CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeEEEECCEECCcccccHHHHh
Confidence 4677777777742 234777777666655 99999999999998654 4799999998762 1 2356
Q ss_pred ceEEEEecCCC-CCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCC
Q 042733 93 RILGYCEQNDI-HSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPS 155 (531)
Q Consensus 93 ~~igyv~Q~~~-~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ 155 (531)
+.+||++|++. .++.+||+|+. .+..++++++++.+++.+..++.+ ||||||+|||||+.+|+
T Consensus 84 ~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~ 163 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK 163 (275)
T ss_dssp HSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 78999999863 44578999872 233457889999999998877766 99999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 156 IISRDEPISGLDARAATTVIRMVRNTV-DMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||||+|||+.++..+++.|++++ ++|+|||++||+++ .+...||++++|++ |++++.|+++
T Consensus 164 lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i~~~g~~~ 229 (275)
T 3gfo_A 164 VLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRVILQGNPK 229 (275)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEEEEEECHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999997 56999999999998 47788999999986 9999999874
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5.4e-38 Score=323.79 Aligned_cols=190 Identities=26% Similarity=0.350 Sum_probs=162.8
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCccc----ch-hhhc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPE----KQ-ETFA 92 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~----~~-~~~~ 92 (531)
.|+++||+++|+ ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+. .. ...+
T Consensus 4 ~l~i~~ls~~y~--~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~i~~~~~~~~~~~ 79 (359)
T 3fvq_A 4 ALHIGHLSKSFQ--NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP--DSGEISLSGKTIFSKNTNLPVRE 79 (359)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEEETTEEEESSSCBCCGGG
T ss_pred EEEEEeEEEEEC--CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEECcccccccchhh
Confidence 467888888884 456788888777766 99999999999998664 479999999865 11 2345
Q ss_pred ceEEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 93 RILGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
+.+|||+|+..++|++||+|+. .+..++++++++.++|.+..++.+ ||||||+|||||+.+|++
T Consensus 80 r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~l 159 (359)
T 3fvq_A 80 RRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPEL 159 (359)
T ss_dssp SCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 7799999999999999999982 344567899999999998888776 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||||||+|||+..+.++++.|+++.+ .|.|+|++|||.+ ++..+|||+++|++ |+++..|+++
T Consensus 160 LLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~ 224 (359)
T 3fvq_A 160 ILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRILQTASPH 224 (359)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEEeCHH
Confidence 999999999999999999998888764 5999999999987 57889999999996 9999999874
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=9.2e-38 Score=324.23 Aligned_cols=190 Identities=21% Similarity=0.289 Sum_probs=164.3
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILG 96 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~ig 96 (531)
.|+++||+++|+ +..+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.+|
T Consensus 3 ~l~~~~l~~~yg--~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~~~~~~~~~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWG--EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMNDTPPAERGVG 78 (381)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTCCGGGSCEE
T ss_pred EEEEEeEEEEEC--CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC--CCeEEEECCEECCCCCHHHCCEE
Confidence 367888888884 456788888777766 99999999999998764 47999999987643 22356799
Q ss_pred EEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
||+|+..++|.+||+|+ ..+.+++++++++.+++.+..++.+ ||||||+|||||+.+|++||||
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLD 158 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999998 2334567889999999998887776 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||+|||+..+.++.+.|+++.++ |.|+|++|||++ ++..+|||+++|++ |+++..|+++
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~ 219 (381)
T 3rlf_A 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPL 219 (381)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeCHH
Confidence 999999999999999999999765 999999999987 67889999999996 9999999874
No 5
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.5e-37 Score=309.08 Aligned_cols=189 Identities=22% Similarity=0.239 Sum_probs=162.0
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc-----hhhhc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK-----QETFA 92 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~-----~~~~~ 92 (531)
.|+++||+++|+ ++++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. ...++
T Consensus 24 ~l~i~~l~~~y~--~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~ 99 (263)
T 2olj_A 24 MIDVHQLKKSFG--SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF--DEGEIIIDGINLKAKDTNLNKVR 99 (263)
T ss_dssp SEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEESSSTTCCHHHHH
T ss_pred eEEEEeEEEEEC--CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCEECCCccccHHHHh
Confidence 489999999994 457899999887766 99999999999998654 4799999997652 12345
Q ss_pred ceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCC
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPS 155 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ 155 (531)
+.+||++|++.+++.+||+|+... ..++++++++.+++.+..++.+ ||||||+|||||+.+|+
T Consensus 100 ~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~ 179 (263)
T 2olj_A 100 EEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPK 179 (263)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCC
Confidence 679999999999999999997321 2345778899999988777665 99999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 156 IISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |+++..|++
T Consensus 180 lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 243 (263)
T 2olj_A 180 IMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYIIEEGKP 243 (263)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999877999999999986 46778999999986 999998875
No 6
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.3e-37 Score=305.01 Aligned_cols=190 Identities=19% Similarity=0.278 Sum_probs=157.8
Q ss_pred EEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh---
Q 042733 28 ISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET--- 90 (531)
Q Consensus 28 l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~--- 90 (531)
|+++||+++|+.+. ..+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~ 79 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTNDLDDDELTK 79 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECTTCCHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEcccCCHHHHHH
Confidence 67888888886432 35888888777766 99999999999998664 47999999976532 11
Q ss_pred -hcceEEEEecCCCCCCCCcHHhHH--------------HHHHHHHHHHHHhcCCchhh-hccH-----HHHHHHHHHHH
Q 042733 91 -FARILGYCEQNDIHSPHDTLYDFT--------------HCLYMFIEEGMELVELNPFR-QALF-----EQRKRLTVAVE 149 (531)
Q Consensus 91 -~~~~igyv~Q~~~~~~~ltv~e~~--------------~~~~~~~~~~l~~l~l~~~~-~~~~-----GerqRv~iA~a 149 (531)
.++.+||++|++.+++.+||+|+. ....+++.+.++.+++.+.. ++.+ ||||||+||||
T Consensus 80 ~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAra 159 (235)
T 3tif_A 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA 159 (235)
T ss_dssp HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred HhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 234699999999999999999972 12245577889999997643 5544 99999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ +...||++++|++ |+++..++++
T Consensus 160 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~i~~~~~~~ 230 (235)
T 3tif_A 160 LANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GEVEREEKLR 230 (235)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TEEEEEEECC
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CEEEEEcChh
Confidence 99999999999999999999999999999999865 999999999986 4578999999996 9999988764
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-37 Score=309.29 Aligned_cols=189 Identities=19% Similarity=0.184 Sum_probs=158.1
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---------
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--------- 88 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--------- 88 (531)
.|+++||+++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+...
T Consensus 6 ~l~i~~l~~~y~--~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~ 81 (262)
T 1b0u_A 6 KLHVIDLHKRYG--GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNINLVRDKDGQLK 81 (262)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECCEEECTTSSEE
T ss_pred eEEEeeEEEEEC--CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcccccccccccc
Confidence 367777777774 345777777666655 99999999999998664 47999999976531
Q ss_pred -------hhhcceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCchh-hhccH-----HHHHH
Q 042733 89 -------ETFARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELNPF-RQALF-----EQRKR 143 (531)
Q Consensus 89 -------~~~~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~~~-~~~~~-----GerqR 143 (531)
..+++.+||++|++.+++.+||+|+... ..++++++++.+++.+. .++.+ |||||
T Consensus 82 ~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qR 161 (262)
T 1b0u_A 82 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR 161 (262)
T ss_dssp ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHH
T ss_pred ccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHH
Confidence 1345679999999999999999997321 23457888999999887 77665 99999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 144 v~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |+++..|++
T Consensus 162 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDP 237 (262)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999999999877999999999986 46778999999986 999998875
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.3e-37 Score=302.84 Aligned_cols=187 Identities=18% Similarity=0.182 Sum_probs=155.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---h---hh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---E---TF 91 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~---~~ 91 (531)
.|+++|++++|+ ++++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... . ..
T Consensus 4 ~l~~~~l~~~y~--~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~ 79 (224)
T 2pcj_A 4 ILRAENIKKVIR--GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP--TEGKVFLEGKEVDYTNEKELSLL 79 (224)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC--SEEEEEETTEECCSSCHHHHHHH
T ss_pred EEEEEeEEEEEC--CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCCCCHHHHHHH
Confidence 467778877774 346777777666655 99999999999998654 47999999976532 1 12
Q ss_pred c-ceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 92 A-RILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 92 ~-~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
+ +.+||++|++.+++.+||+|+.. ...++++++++.+++.+..++.+ ||||||+|||||+.+|
T Consensus 80 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p 159 (224)
T 2pcj_A 80 RNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEP 159 (224)
T ss_dssp HHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCC
T ss_pred HhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 2 57999999999999999999821 22356788999999988776655 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
++|+|||||+|||+.++..+.+.|++++++|+|||++|||++ .+ ..||++++|++ |++++.|+
T Consensus 160 ~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~-G~i~~~g~ 222 (224)
T 2pcj_A 160 ILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKD-GKVVGEIT 222 (224)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEET-TEEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEEC-CEEEEEee
Confidence 999999999999999999999999999877999999999976 34 78999999986 99999886
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.9e-37 Score=305.99 Aligned_cols=189 Identities=19% Similarity=0.298 Sum_probs=161.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARIL 95 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~i 95 (531)
.|+++||+++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.+
T Consensus 15 ~l~i~~l~~~y~--~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~i 90 (256)
T 1vpl_A 15 AVVVKDLRKRIG--KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNVVEEPHEVRKLI 90 (256)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEETTTCHHHHHTTE
T ss_pred eEEEEEEEEEEC--CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCccHHHHhhcE
Confidence 478999999994 457899999888776 99999999999998653 47999999987532 2356779
Q ss_pred EEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEE
Q 042733 96 GYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISR 159 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllL 159 (531)
||++|++.+++.+||+|+.. ...++++++++.+++.+..++.+ ||||||+|||||+.+|++|+|
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllL 170 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAIL 170 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999821 11245778899999988777665 999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 160 DEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 160 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |++++.|++
T Consensus 171 DEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 230 (256)
T 1vpl_A 171 DEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTV 230 (256)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEH
T ss_pred eCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecCH
Confidence 9999999999999999999999877999999999986 46678999999986 999998875
No 10
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.4e-37 Score=307.08 Aligned_cols=189 Identities=20% Similarity=0.226 Sum_probs=159.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~ 93 (531)
.|+++||+++|+ ++++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++
T Consensus 7 ~l~i~~l~~~y~--~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~ 82 (257)
T 1g6h_A 7 ILRTENIVKYFG--EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDITNKEPAELYHY 82 (257)
T ss_dssp EEEEEEEEEEET--TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECTTCCHHHHHHH
T ss_pred EEEEeeeEEEEC--CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHHHhC
Confidence 578888888884 356888888666655 99999999999998664 47999999987532 22355
Q ss_pred eEEEEecCCCCCCCCcHHhHHH------------------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHH
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH------------------------CLYMFIEEGMELVELNPFRQALF-----EQRKRL 144 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~------------------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv 144 (531)
.+||++|++.+++.+||+|+.. ....++++.++.+++.+..++.+ ||||||
T Consensus 83 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv 162 (257)
T 1g6h_A 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLV 162 (257)
T ss_dssp TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred CEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHH
Confidence 7999999998889999998721 11345778899999988777665 999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |++++.|++
T Consensus 163 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 237 (257)
T 1g6h_A 163 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRG 237 (257)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEET-TEEEEEEES
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEeCH
Confidence 9999999999999999999999999999999999999877999999999987 46778999999986 999998876
No 11
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=4.6e-37 Score=316.91 Aligned_cols=193 Identities=21% Similarity=0.307 Sum_probs=166.2
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcce
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARI 94 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~ 94 (531)
...|+++||+++|+ +++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.
T Consensus 12 ~~~l~~~~l~~~y~-g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~~~~~~~r~ 88 (355)
T 1z47_A 12 SMTIEFVGVEKIYP-GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGKRVTDLPPQKRN 88 (355)
T ss_dssp CEEEEEEEEEECCT-TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTCCGGGSS
T ss_pred CceEEEEEEEEEEc-CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEECCcCChhhCc
Confidence 35689999999993 2456899999888776 99999999999998664 47999999987532 234677
Q ss_pred EEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 95 LGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
+|||+|+..++|.+||+|+. ....++++++++.+++.+..++.+ ||||||+|||||+.+|++|+
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 168 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLL 168 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999982 123456888999999998877766 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||||+|||+.++.++.+.|++++++ |.|+|++|||++ ++..+||++++|++ |+++..|+++
T Consensus 169 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 231 (355)
T 1z47_A 169 FDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGTPE 231 (355)
T ss_dssp EESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999999999765 999999999986 57788999999996 9999999864
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=6.4e-37 Score=316.57 Aligned_cols=189 Identities=21% Similarity=0.251 Sum_probs=160.3
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGY 97 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igy 97 (531)
|+++|++++|+ ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.+||
T Consensus 4 l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~~~~~~~r~ig~ 79 (359)
T 2yyz_A 4 IRVVNLKKYFG--KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP--TSGEIYFDDVLVNDIPPKYREVGM 79 (359)
T ss_dssp EEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEEEEEEC--CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC--CccEEEECCEECCCCChhhCcEEE
Confidence 67777777774 345777777766655 99999999999998663 47999999987542 123567999
Q ss_pred EecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 98 CEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
|+|+..++|++||+|+. .+..++++++++.+++.+..++.+ ||||||+|||||+.+|++|+|||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDE 159 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDE 159 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999982 122356889999999998877766 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 162 PISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||+|||+..+.++.+.|+++.++ |.|+|++|||++ ++..+||++++|++ |+++..|+++
T Consensus 160 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 219 (359)
T 2yyz_A 160 PLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTPD 219 (359)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999765 999999999976 57788999999996 9999999864
No 13
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.4e-37 Score=302.14 Aligned_cols=189 Identities=17% Similarity=0.210 Sum_probs=155.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh-hcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-FAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-~~~ 93 (531)
.++++||+++|+ ++++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... .. .++
T Consensus 6 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~ 81 (240)
T 1ji0_A 6 VLEVQSLHVYYG--AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECTTCCHHHHHHT
T ss_pred eEEEEeEEEEEC--CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCCHHHHHhC
Confidence 467778877774 345777777666655 99999999999998653 47999999987532 12 245
Q ss_pred eEEEEecCCCCCCCCcHHhHHH----------HHHHHHHHHHHhcC-CchhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH----------CLYMFIEEGMELVE-LNPFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~----------~~~~~~~~~l~~l~-l~~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
.+||++|++.+++.+||+|+.. ...+.+++.++.++ +.+..++.+ ||||||+|||||+.+|++|
T Consensus 82 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ll 161 (240)
T 1ji0_A 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLL 161 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEE
T ss_pred CEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 5999999999999999999721 22345677888884 776665554 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |+++..|++
T Consensus 162 lLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 223 (240)
T 1ji0_A 162 MMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLEGKA 223 (240)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999878999999999976 46788999999986 999998875
No 14
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=8.9e-37 Score=317.35 Aligned_cols=190 Identities=22% Similarity=0.277 Sum_probs=160.7
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ET 90 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~ 90 (531)
.|+++||+++|+ ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ..
T Consensus 3 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~~~~~~~~~~~~ 78 (372)
T 1g29_1 3 GVRLVDVWKVFG--EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLVADPEKGIFVPP 78 (372)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEEEEGGGTEECCG
T ss_pred EEEEEeEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC--CccEEEECCEECccccccccCCH
Confidence 367788888774 346777777766655 99999999999998663 47999999976532 12
Q ss_pred hcceEEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
.++.+|||+|+..++|++||+|+. ....++++++++.++|.+..++.+ ||||||+|||||+.+|
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 158 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKP 158 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 356799999999999999999982 123456888999999998877766 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|+|||||+|||+..+.++.+.|+++.++ |.|+|++|||++ ++..+||++++|++ |+++..|+++
T Consensus 159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 225 (372)
T 1g29_1 159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVLQQVGSPD 225 (372)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEEEEeCCHH
Confidence 999999999999999999999999999765 999999999986 57789999999996 9999999864
No 15
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=5.5e-37 Score=301.24 Aligned_cols=170 Identities=19% Similarity=0.271 Sum_probs=145.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEEEecCCCCCCCCcHHhHH---------HHH
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGYCEQNDIHSPHDTLYDFT---------HCL 117 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igyv~Q~~~~~~~ltv~e~~---------~~~ 117 (531)
+.+.+||||||||||+|+|+|..++ .+|+|.++|.+... ...++.+||++|++.+++.+||+|+. ...
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~ 103 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVER 103 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchH
Confidence 4567789999999999999998654 47999999987532 23456799999999999999999972 122
Q ss_pred HHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEE
Q 042733 118 YMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCT 191 (531)
Q Consensus 118 ~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~ 191 (531)
.++++++++.+++.+..++.+ ||||||+|||||+++|++|+|||||+|||+.+++.+++.|++++++ |+|||++
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~v 183 (240)
T 2onk_A 104 DRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV 183 (240)
T ss_dssp HHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 456788999999988776655 9999999999999999999999999999999999999999999764 9999999
Q ss_pred ecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 192 IHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 192 ~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||+++ ++...||++++|++ |+++..|++
T Consensus 184 tHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 184 THDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp ESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred eCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99976 46788999999986 999998875
No 16
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=7e-37 Score=316.60 Aligned_cols=189 Identities=24% Similarity=0.331 Sum_probs=159.3
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGY 97 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igy 97 (531)
|+++|++++|+ ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.+||
T Consensus 4 l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~~~~~~~r~ig~ 79 (362)
T 2it1_A 4 IKLENIVKKFG--NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP--TSGKIYFDEKDVTELPPKDRNVGL 79 (362)
T ss_dssp EEEEEEEEESS--SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEeEEEEEC--CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CceEEEECCEECCcCCHhHCcEEE
Confidence 56777777773 345777777666655 99999999999998663 47999999987532 123567999
Q ss_pred EecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 98 CEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
|+|+..++|++||+|+. ....++++++++.+++.+..++.+ ||||||+|||||+.+|++|+|||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 159 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDE 159 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999982 123456888999999988877765 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 162 PISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||+|||+..+.++.+.|+++.++ |.|+|++|||++ ++..+||++++|++ |+++..|+++
T Consensus 160 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 219 (362)
T 2it1_A 160 PLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTPD 219 (362)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999999765 999999999986 57789999999996 9999999864
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=6.5e-37 Score=316.48 Aligned_cols=189 Identities=25% Similarity=0.340 Sum_probs=161.4
Q ss_pred EEEEeEEEEEeCCCcc--ccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hh
Q 042733 28 ISLNEIVYSVDMPQIG--DLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ET 90 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~--iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~ 90 (531)
|+++||+++|+ ++. +|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ..
T Consensus 4 l~i~~l~~~y~--~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 4 IIVKNVSKVFK--KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp EEEEEEEEEEG--GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEEEEETTEESSCG
T ss_pred EEEEeEEEEEC--CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECcccccccCCh
Confidence 67788888884 345 788887777665 99999999999998653 47999999976532 23
Q ss_pred hcceEEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
.++.+|||+|+..++|++||+|+. ....++++++++.+++.+..++.+ ||||||+|||||+.+|
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P 159 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDP 159 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 467899999999999999999982 233467889999999998877766 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|+|||||+|||+..+.++.+.|+++.++ |.|+|++|||++ ++..+||++++|++ |+++..|+++
T Consensus 160 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 226 (353)
T 1oxx_K 160 SLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGKPE 226 (353)
T ss_dssp SEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999999999765 999999999986 57788999999996 9999999864
No 18
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=6e-37 Score=305.47 Aligned_cols=191 Identities=21% Similarity=0.269 Sum_probs=163.4
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..|+++|++++|+ ++++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++
T Consensus 10 ~~l~~~~l~~~~~--~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~ 85 (266)
T 4g1u_C 10 ALLEASHLHYHVQ--QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNLNSWQPKALAR 85 (266)
T ss_dssp CEEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEETTTSCHHHHHH
T ss_pred ceEEEEeEEEEeC--CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECCcCCHHHHhh
Confidence 3688999999985 467899988877766 99999999999997653 36899999987532 34556
Q ss_pred eEEEEecCCCCCCCCcHHhHH---------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhh------C
Q 042733 94 ILGYCEQNDIHSPHDTLYDFT---------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVA------N 153 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~---------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~------~ 153 (531)
.++|++|++.+++.+||+|+. ....++++++++.+++.+..++.+ ||||||+|||||++ +
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~ 165 (266)
T 4g1u_C 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT 165 (266)
T ss_dssp HEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred eEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 799999999888899999972 123456888999999988777665 99999999999999 9
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|++|||||||+|||+.++..+++.|++++++ |+|||++|||++ ++...||++++|++ |++++.|+++
T Consensus 166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~-G~i~~~g~~~ 233 (266)
T 4g1u_C 166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ-GKLVACGTPE 233 (266)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999999999999876 579999999987 46778999999996 9999999874
No 19
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.1e-36 Score=316.25 Aligned_cols=189 Identities=21% Similarity=0.301 Sum_probs=154.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGY 97 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igy 97 (531)
|+++||+++|+ ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.+||
T Consensus 12 l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~~~~~~~r~ig~ 87 (372)
T 1v43_A 12 VKLENLTKRFG--NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDVTYLPPKDRNISM 87 (372)
T ss_dssp EEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCGGGGTEEE
T ss_pred EEEEEEEEEEC--CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CceEEEECCEECCCCChhhCcEEE
Confidence 57777777773 345677777666655 99999999999998663 47999999987532 123567999
Q ss_pred EecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 98 CEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
|+|+..++|++||+|+. ....++++++++.+++.+..++.+ ||||||+|||||+.+|++|+|||
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 167 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE 167 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999999999999982 233467889999999998887766 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 162 PISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||+|||+..+.++.+.|+++.++ |.|+|++|||++ ++..+||++++|++ |+++..|+++
T Consensus 168 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 227 (372)
T 1v43_A 168 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSPT 227 (372)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999765 999999999976 57788999999996 9999999864
No 20
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=4.8e-36 Score=299.18 Aligned_cols=191 Identities=23% Similarity=0.379 Sum_probs=159.2
Q ss_pred EEEEEeEEEEEeCCC---ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcce
Q 042733 27 YISLNEIVYSVDMPQ---IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~---~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ 94 (531)
.|+++||+++|+.++ +.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.....+++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~ 79 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIRRN 79 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECCHHHHGGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEECchHHhhhh
Confidence 367888888885212 45888888777666 99999999999998653 47999999987643345677
Q ss_pred EEEEecCC-CCCCCCcHHhHHHH----------HHHHHHHHHHhcCCc--hhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 95 LGYCEQND-IHSPHDTLYDFTHC----------LYMFIEEGMELVELN--PFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 95 igyv~Q~~-~~~~~ltv~e~~~~----------~~~~~~~~l~~l~l~--~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
+||++|++ ..++.+||+|+... ..++++++++.+|+. +..++.+ ||||||+|||||+.+|++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l 159 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDI 159 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99999995 46677999998321 134578899999998 7776665 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+...||++++|++ |+++..|++
T Consensus 160 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 222 (266)
T 2yz2_A 160 LILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGTR 222 (266)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEEH
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999877999999999987 46678999999986 999988874
No 21
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.9e-36 Score=310.59 Aligned_cols=188 Identities=21% Similarity=0.262 Sum_probs=160.5
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGY 97 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igy 97 (531)
|+++|++++|+ ++ +|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.+||
T Consensus 2 l~~~~l~~~y~--~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~~~~~~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWK--NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVTDLSPEKHDIAF 76 (348)
T ss_dssp EEEEEEEEECS--SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECTTSCHHHHTCEE
T ss_pred EEEEEEEEEEC--CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC--CCcEEEECCEECCCCchhhCcEEE
Confidence 57888888884 34 888888777766 99999999999998664 47999999987532 224567999
Q ss_pred EecCCCCCCCCcHHhHHHH--------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCC
Q 042733 98 CEQNDIHSPHDTLYDFTHC--------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPIS 164 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~~--------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPts 164 (531)
|+|+..++|++||+|+... ..++++++++.+++.+..++.+ ||||||+|||||+.+|++|+|||||+
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s 156 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS 156 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 9999999999999998321 0156888999999998877766 99999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 165 GLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 165 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||+..+.++.+.|++++++ |.|+|++|||++ ++..+||++++|++ |+++..|+++
T Consensus 157 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 213 (348)
T 3d31_A 157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKPE 213 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999764 999999999976 57788999999986 9999999864
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3.6e-36 Score=301.76 Aligned_cols=192 Identities=23% Similarity=0.366 Sum_probs=160.9
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc-----hhh
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK-----QET 90 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~-----~~~ 90 (531)
...|+++||+++|+ ++++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. ...
T Consensus 19 ~~~l~~~~l~~~y~--~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~~~~~~~~~~ 94 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQ--GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKMPGKVGYSAET 94 (279)
T ss_dssp CEEEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTBCCC---CCHHH
T ss_pred CceEEEEeEEEEEC--CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCeEEEECCEEcccccCCHHH
Confidence 44689999999995 457999999887776 99999999999998654 4799999998653 233
Q ss_pred hcceEEEEecCCCCC--CCCcHHhHHH---------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHH
Q 042733 91 FARILGYCEQNDIHS--PHDTLYDFTH---------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAV 148 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~--~~ltv~e~~~---------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~ 148 (531)
+++.+||++|++.+. +.+||+|+.. ...++++++++.+++.+..++.+ ||||||+|||
T Consensus 95 ~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAr 174 (279)
T 2ihy_A 95 VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIAR 174 (279)
T ss_dssp HHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred HcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHH
Confidence 567799999987543 3569998721 11345778899999988777665 9999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE--EEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTV--VCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tv--i~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||+.+|++|||||||+|||+.+++.+++.|++++++|+|| |++||+++ ++...||++++|++ |++++.|+++
T Consensus 175 aL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 248 (279)
T 2ihy_A 175 ALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGAVE 248 (279)
T ss_dssp HHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEET-TEEEEEEEHH
T ss_pred HHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999998779999 99999987 46678999999986 9999988764
No 23
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.7e-35 Score=293.79 Aligned_cols=197 Identities=24% Similarity=0.246 Sum_probs=155.8
Q ss_pred cccceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---h
Q 042733 22 LFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---E 89 (531)
Q Consensus 22 ~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~ 89 (531)
|.....|+++||+++|+ ++.+|+|+|+.+.+| |||||||+|+|+|.....+.+|+|.++|.+... .
T Consensus 15 ~~~~~~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~ 92 (267)
T 2zu0_C 15 PRGSHMLSIKDLHVSVE--DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE 92 (267)
T ss_dssp -----CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHH
T ss_pred CCCCceEEEEeEEEEEC--CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHH
Confidence 33344588888888884 456888888777766 999999999999984212468999999986532 1
Q ss_pred hh-cceEEEEecCCCCCCCCcHHhHHHH------------------HHHHHHHHHHhcCCc-hhhh------ccHHHHHH
Q 042733 90 TF-ARILGYCEQNDIHSPHDTLYDFTHC------------------LYMFIEEGMELVELN-PFRQ------ALFEQRKR 143 (531)
Q Consensus 90 ~~-~~~igyv~Q~~~~~~~ltv~e~~~~------------------~~~~~~~~l~~l~l~-~~~~------~~~GerqR 143 (531)
.. ++.++|++|++.+++.+|+.|+... ...+++++++.+++. +..+ .+.|||||
T Consensus 93 ~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QR 172 (267)
T 2zu0_C 93 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKR 172 (267)
T ss_dssp HHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHH
T ss_pred HHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHH
Confidence 22 3458999999999999999886211 123567888999985 3433 33499999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhc-cCeEEEEccCceeeecCCCC
Q 042733 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYS-FDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 144 v~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+... ||++++|++ |+++..|+++
T Consensus 173 v~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~-G~i~~~g~~~ 250 (267)
T 2zu0_C 173 NDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-GRIVKSGDFT 250 (267)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET-TEEEEEECTT
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999999999999999999999998767999999999986 35554 899999986 9999999864
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.3e-35 Score=291.71 Aligned_cols=191 Identities=21% Similarity=0.247 Sum_probs=151.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh-hcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-FAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-~~~ 93 (531)
.++++||+++|+ ++.+|+|+|+.+.+| |||||||+|+|+|.....+.+|+|.++|.+... .. .++
T Consensus 3 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASID--GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred eEEEEeEEEEEC--CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 367888888874 356788877766665 999999999999972111468999999987532 12 234
Q ss_pred eEEEEecCCCCCCCCcHHhHHH--------------HHHHHHHHHHHhcCC-chhhhc------cHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH--------------CLYMFIEEGMELVEL-NPFRQA------LFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~--------------~~~~~~~~~l~~l~l-~~~~~~------~~GerqRv~iA~aL~~ 152 (531)
.++|++|++.+++.+||+|+.. ....+++++++.+++ .+..++ +.||||||+|||||+.
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~ 160 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL 160 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc
Confidence 5899999999999999998721 112456778899999 465554 3399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhc-cCeEEEEccCceeeecCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYS-FDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+... ||++++|++ |+++..|++
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~i~~~g~~ 228 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GRVVATGGP 228 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TEEEEEESH
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CEEEEEeCH
Confidence 99999999999999999999999999999767999999999987 45566 599999986 999999875
No 25
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.2e-35 Score=291.15 Aligned_cols=189 Identities=21% Similarity=0.293 Sum_probs=154.4
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..++++||+++|+.+++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~i~g~~~~~~~~~~~~~ 83 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDLALADPNWLRR 83 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEETTTSCHHHHHH
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhhhCCHHHHHh
Confidence 468999999999422457899999887776 99999999999998654 47999999987532 33566
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~ 152 (531)
.+||++|++.+++ .||+|+.. .....+++.++.+++.+..+ .+.||||||+|||||+.
T Consensus 84 ~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~ 162 (247)
T 2ff7_A 84 QVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162 (247)
T ss_dssp HEEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred cEEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc
Confidence 7999999988876 69999831 11234566777777765443 23399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++|+|||||+|||+.++..+++.|++++ +|+|||++||+++. + ..||++++|++ |+++..|++
T Consensus 163 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~ 227 (247)
T 2ff7_A 163 NPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK-GKIVEQGKH 227 (247)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET-TEEEEEECH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999995 59999999999873 4 45999999986 999998875
No 26
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=4e-35 Score=289.48 Aligned_cols=194 Identities=18% Similarity=0.269 Sum_probs=158.7
Q ss_pred hhhhhcccCCCccccccceEEEEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc
Q 042733 8 AIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK 87 (531)
Q Consensus 8 ~i~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~ 87 (531)
+|++++++++ + .++|+++++.. .++.+.+||||||||||+|+|+|..++ . |+|.++|.+..
T Consensus 4 ~l~~~~l~~~----~------vl~~vsl~i~~------Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~-G~i~~~g~~~~ 64 (249)
T 2qi9_C 4 VMQLQDVAES----T------RLGPLSGEVRA------GEILHLVGPNGAGKSTLLARMAGMTSG--K-GSIQFAGQPLE 64 (249)
T ss_dssp EEEEEEEEET----T------TEEEEEEEEET------TCEEEEECCTTSSHHHHHHHHTTSSCC--E-EEEEETTEEGG
T ss_pred EEEEEceEEE----E------EEeeeEEEEcC------CCEEEEECCCCCcHHHHHHHHhCCCCC--C-eEEEECCEECC
Confidence 4666666654 1 25566666642 245667777799999999999998764 5 99999998653
Q ss_pred ---hhhhcceEEEEecCCCCCCCCcHHhHHHH------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhC
Q 042733 88 ---QETFARILGYCEQNDIHSPHDTLYDFTHC------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVAN 153 (531)
Q Consensus 88 ---~~~~~~~igyv~Q~~~~~~~ltv~e~~~~------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~ 153 (531)
...+++.+||++|++.+++.+||+|+... ..+.++++++.+++.+..++.+ ||||||+|||||+.+
T Consensus 65 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp GSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 23356679999999998899999998321 1456788999999988777665 999999999999999
Q ss_pred CC-------eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PS-------IISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~-------lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+ +|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+...||++++|++ |+++..|+++
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 218 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRRE 218 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEHH
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99 99999999999999999999999999877999999999976 46678999999986 9999988753
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=8.4e-35 Score=287.96 Aligned_cols=180 Identities=22% Similarity=0.314 Sum_probs=150.5
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGY 97 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igy 97 (531)
.|+++|++++|+. ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|. .++.+||
T Consensus 4 ~l~i~~l~~~y~~-~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~----------~~~~i~~ 70 (253)
T 2nq2_C 4 ALSVENLGFYYQA-ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP--IQGKIE----------VYQSIGF 70 (253)
T ss_dssp EEEEEEEEEEETT-TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC--SEEEEE----------ECSCEEE
T ss_pred eEEEeeEEEEeCC-CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEE----------EeccEEE
Confidence 4678888888841 346788877766555 99999999999998653 368876 2456999
Q ss_pred EecCCCCCCCCcHHhHHH---------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 98 CEQNDIHSPHDTLYDFTH---------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~---------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
++|++.+++.+||+|+.. ....+++++++.+++.+..++.+ ||||||+|||||+.+|++|
T Consensus 71 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ll 150 (253)
T 2nq2_C 71 VPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLI 150 (253)
T ss_dssp ECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEE
T ss_pred EcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999888999998721 12345788899999988776665 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...||++++|++ |+ ++.|+++
T Consensus 151 lLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~~~ 213 (253)
T 2nq2_C 151 LLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGETR 213 (253)
T ss_dssp EESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEEHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCCHH
Confidence 999999999999999999999999876 999999999986 46678999999986 89 8888753
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=4.3e-35 Score=297.02 Aligned_cols=190 Identities=21% Similarity=0.265 Sum_probs=154.9
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
...|+++||+|+|+. .+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..++
T Consensus 51 ~~~i~~~~vs~~y~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~G~~i~~~~~~~~r 127 (306)
T 3nh6_A 51 KGRIEFENVHFSYAD-GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI--SSGCIRIDGQDISQVTQASLR 127 (306)
T ss_dssp SCCEEEEEEEEESST-TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC--SEEEEEETTEETTSBCHHHHH
T ss_pred CCeEEEEEEEEEcCC-CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCcEEEECCEEcccCCHHHHh
Confidence 346899999999963 457999999998887 99999999999998664 47999999987642 3467
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhh----------------hccHHHHHHHHHHHHHh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFR----------------QALFEQRKRLTVAVEFV 151 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~----------------~~~~GerqRv~iA~aL~ 151 (531)
+.+|||+|++.+++ .||+|+.. .....++++++..++.+.. +.+.||||||+|||||+
T Consensus 128 ~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~ 206 (306)
T 3nh6_A 128 SHIGVVPQDTVLFN-DTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTIL 206 (306)
T ss_dssp HTEEEECSSCCCCS-EEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred cceEEEecCCccCc-ccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 78999999998874 69999821 1123345555555554432 22339999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
.+|++|||||||+|||+.++..+.+.|+++.+ ++|+|+++|+++. +. .||+|++|++ |+++..|+++
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~~-~aD~i~vl~~-G~iv~~G~~~ 273 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-VV-NADQILVIKD-GCIVERGRHE 273 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-HH-TCSEEEEEET-TEEEEEECHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-HH-cCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999999999999999864 7899999999873 44 4999999996 9999999863
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=8.2e-35 Score=290.88 Aligned_cols=189 Identities=18% Similarity=0.239 Sum_probs=151.6
Q ss_pred EEEEEeEEEEEeC-CCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 27 YISLNEIVYSVDM-PQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~-~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
.|+++||+++|+. +.+.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++
T Consensus 16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP--TGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEGGGBCHHHHHH
T ss_pred eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEcccCCHHHHhc
Confidence 5899999999953 1257999999888777 99999999999998654 47999999987532 23466
Q ss_pred eEEEEecCCCCCCCCcHHhHHH----------HHH-----HHHHHHHHhc--CCchhhhcc-----HHHHHHHHHHHHHh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH----------CLY-----MFIEEGMELV--ELNPFRQAL-----FEQRKRLTVAVEFV 151 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~----------~~~-----~~~~~~l~~l--~l~~~~~~~-----~GerqRv~iA~aL~ 151 (531)
.+||++|++.+++ .||+|+.. ... ..+++.++.+ |+....++. .||||||+|||||+
T Consensus 94 ~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~ 172 (271)
T 2ixe_A 94 QVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI 172 (271)
T ss_dssp HEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT
T ss_pred cEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHh
Confidence 7999999988876 59999721 110 1133455555 555444433 39999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||+++. + ..||++++|++ |+++..|++
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~-~~~d~v~~l~~-G~i~~~g~~ 240 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-A-ERAHHILFLKE-GSVCEQGTH 240 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-H-TTCSEEEEEET-TEEEEEECH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999865 48999999999763 4 45999999986 999998875
No 30
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=5.4e-35 Score=282.02 Aligned_cols=178 Identities=16% Similarity=0.232 Sum_probs=148.7
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGY 97 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igy 97 (531)
.|+++|++++|+ + ++|+++|+.+.+| |||||||||+|+|..++ .+|+|.++|.+.. ..++.++|
T Consensus 10 ~l~~~~ls~~y~--~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~~--~~~~~i~~ 82 (214)
T 1sgw_A 10 KLEIRDLSVGYD--K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPIT--KVKGKIFF 82 (214)
T ss_dssp EEEEEEEEEESS--S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEGG--GGGGGEEE
T ss_pred eEEEEEEEEEeC--C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEhh--hhcCcEEE
Confidence 468889988885 3 6888888777666 99999999999998653 4799999998764 35678999
Q ss_pred EecCCCCCCCCcHHhHHHH---------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCC
Q 042733 98 CEQNDIHSPHDTLYDFTHC---------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPI 163 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~~---------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPt 163 (531)
++|++.+++.+||+|+... ....++++++.+++.+. ++.+ ||||||+||+||+.+|++|+|||||
T Consensus 83 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 83 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp ECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred EeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 9999999999999998321 13467888999999876 5554 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 164 SGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 164 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
+|||+.++..+++.|++++++|+|||++||+++ ++...+|+++++. |++
T Consensus 162 s~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~--~~~ 210 (214)
T 1sgw_A 162 VAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS--TKI 210 (214)
T ss_dssp TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB--C--
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC--Ccc
Confidence 999999999999999999877899999999987 4667788887653 554
No 31
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4.8e-34 Score=283.70 Aligned_cols=188 Identities=21% Similarity=0.288 Sum_probs=152.4
Q ss_pred eEEEEEeEEEEEeCCC-ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 26 HYISLNEIVYSVDMPQ-IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~-~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
..|+++||+++|+... +.+|+|+|+.+.+| |||||||+|+|+|..++ +|+|.++|.+... ..++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~G~I~i~g~~i~~~~~~~~~ 92 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA---EGDIKIGGKNVNKYNRNSIR 92 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---EEEEEETTEEGGGBCHHHHH
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC---CeEEEECCEEhhhcCHHHHh
Confidence 3589999999996322 46999999888777 99999999999998752 6999999987532 3356
Q ss_pred ceEEEEecCCCCCCCCcHHhHHHH-----HHHHHHHHHHhcCCchhh----------------hccHHHHHHHHHHHHHh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTHC-----LYMFIEEGMELVELNPFR----------------QALFEQRKRLTVAVEFV 151 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~~-----~~~~~~~~l~~l~l~~~~----------------~~~~GerqRv~iA~aL~ 151 (531)
+.+||++|++.+++ .||+|+... ....+.+.++.+++.+.. +.+.||||||+|||||+
T Consensus 93 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 93 SIIGIVPQDTILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp TTEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred ccEEEEcCCCcccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 77999999998875 699998321 123455666666664432 22349999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
.+|++|+|||||+|||+.++..+++.|+++++ |+|||++||+++. + ..||++++|++ |+++..|++
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~-G~i~~~g~~ 237 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK-GKIVEKGTH 237 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-TEEEEEECH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999864 8999999999873 4 45999999986 999998875
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=6.4e-35 Score=287.28 Aligned_cols=186 Identities=24% Similarity=0.358 Sum_probs=151.8
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~i 95 (531)
++++|++++|+ +++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++.+
T Consensus 2 l~~~~l~~~y~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i 78 (243)
T 1mv5_A 2 LSARHVDFAYD-DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPIDNISLENWRSQI 78 (243)
T ss_dssp EEEEEEEECSS-SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEESTTTSCSCCTTTC
T ss_pred EEEEEEEEEeC-CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhhhCCHHHHHhhE
Confidence 67888988884 2356888888887776 99999999999998653 36899999976532 2346679
Q ss_pred EEEecCCCCCCCCcHHhHHH------HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhhC
Q 042733 96 GYCEQNDIHSPHDTLYDFTH------CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~------~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~~ 153 (531)
||++|++.+++ .||+|+.. .....+++.++.+++.+..+ .+.||||||+|||||+++
T Consensus 79 ~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~ 157 (243)
T 1mv5_A 79 GFVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157 (243)
T ss_dssp CEECCSSCCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEcCCCcccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcC
Confidence 99999998876 59999721 11344677788888766543 233999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|++|+|||||+|||+.++..+++.|++++ +|+|||++||+++ .+ ..||++++|++ |+++..|++
T Consensus 158 p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~i~~~g~~ 221 (243)
T 1mv5_A 158 PKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEK-GQITGSGKH 221 (243)
T ss_dssp CSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEET-TEECCCSCH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999987 6999999999976 34 46999999986 999988875
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=299.82 Aligned_cols=190 Identities=15% Similarity=0.186 Sum_probs=160.6
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
...|+++||+++|+.+++.+|+|+|+.+.+| |||||||||+|+|..+ .+|+|.++|.+... ..++
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBTTSSCHHHHH
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEECCcCChHHHh
Confidence 3468999999999654568999999998877 9999999999999864 47999999987542 3456
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH----HHHHHHHHHHHhcCCchhhhc----------------cHHHHHHHHHHHHHhh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH----CLYMFIEEGMELVELNPFRQA----------------LFEQRKRLTVAVEFVA 152 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~----~~~~~~~~~l~~l~l~~~~~~----------------~~GerqRv~iA~aL~~ 152 (531)
+.+|||+|++.+++ .||+|+.. ...++++++++.+++.+..++ +.||||||+|||||+.
T Consensus 94 r~ig~v~Q~~~lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 94 KAFGVIPQKVFIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp HTEEEESCCCCCCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCcccCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 78999999999887 69999832 123457788999998776543 4499999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|++|||||||+|||+..+.++.+.|+++. +++|+|++||+.+ ....|||+++|++ |+++..|+++
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~-G~i~~~g~~~ 238 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE-NKVRQYDSIL 238 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-TEEEEESSHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999998864 4899999999975 4556999999996 9999999874
No 34
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.2e-33 Score=279.05 Aligned_cols=184 Identities=16% Similarity=0.180 Sum_probs=150.1
Q ss_pred EEEEeEEEEEeCC--CccccccEEEEEc--------CCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE-
Q 042733 28 ISLNEIVYSVDMP--QIGDLNSLSGAFR--------PGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG- 96 (531)
Q Consensus 28 l~~~~ls~~~~~~--~~~iL~~vs~~i~--------~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig- 96 (531)
++++|++++|+.. .+.+|+++|+.+. |||||||||+|+|+|.. + .+|+|.++|.+......++.+|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGGGCSCCTTEEE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECcchHHhhheEE
Confidence 5777888777521 1457777776665 44999999999999987 4 4799999997653211256799
Q ss_pred EEecCCCCCCCCcHHhHHHH-------HHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCC
Q 042733 97 YCEQNDIHSPHDTLYDFTHC-------LYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAVEFVANPSIISRDEPI 163 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~~-------~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPt 163 (531)
|++|++.+ .+||+|+... ...++++.++.+++. +..++.+ ||||||+|||||+.+|++|+|||||
T Consensus 79 ~v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 156 (263)
T 2pjz_A 79 NLPEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPF 156 (263)
T ss_dssp CCGGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT
T ss_pred EeCCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 99999876 8999998321 134578899999998 7776655 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccC-eEEEEccCceeeecCCC
Q 042733 164 SGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFD-ELFLLKQVGQEISVGPL 221 (531)
Q Consensus 164 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d-~v~lL~~~G~~v~~G~~ 221 (531)
+|||+.++..+.+.|+++++ |||++||+++ ++...|| ++++|++ |+++..|++
T Consensus 157 s~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~~ 210 (263)
T 2pjz_A 157 ENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPISV 210 (263)
T ss_dssp TTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEEH
T ss_pred cccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecCH
Confidence 99999999999999998753 9999999987 4667899 9999986 999999875
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=5.1e-33 Score=271.27 Aligned_cols=178 Identities=17% Similarity=0.216 Sum_probs=138.6
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGY 97 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igy 97 (531)
.|+++|++++|+.+++++|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++| .++|
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g----------~i~~ 73 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG----------RISF 73 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEECS----------CEEE
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CccEEEECC----------EEEE
Confidence 47888888888533456888888777665 99999999999998653 479999987 3899
Q ss_pred EecCCCCCCCCcHHhHHHH----HHHHHHHHHHhcCCchh----------------hhccHHHHHHHHHHHHHhhCCCeE
Q 042733 98 CEQNDIHSPHDTLYDFTHC----LYMFIEEGMELVELNPF----------------RQALFEQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~~----~~~~~~~~l~~l~l~~~----------------~~~~~GerqRv~iA~aL~~~p~ll 157 (531)
++|++.+++. ||+|+... .....++.++.+++.+. .+.+.||||||+|||||+.+|+++
T Consensus 74 v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ll 152 (229)
T 2pze_A 74 CSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY 152 (229)
T ss_dssp ECSSCCCCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred EecCCcccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999988875 99998321 01123334444444322 233349999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHH-HHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 158 SRDEPISGLDARAATTVIRM-VRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|||||+|||+.++..+++. ++++. +|+|||++||+++ .+ ..||++++|++ |+++..|++
T Consensus 153 lLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~i~~~g~~ 213 (229)
T 2pze_A 153 LLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-GSSYFYGTF 213 (229)
T ss_dssp EEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEET-TEEEEEECH
T ss_pred EEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999997 45554 4899999999976 34 45999999986 999998875
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=268.11 Aligned_cols=177 Identities=19% Similarity=0.288 Sum_probs=137.7
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
++++|++++|+..++.+|+++|+.+.+| |||||||+|+|+|..+ +.+|+|.++| .+||+
T Consensus 4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g----------~i~~v 71 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG----------SVAYV 71 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----------CEEEE
T ss_pred EEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----------EEEEE
Confidence 6888888888532456888888777666 9999999999999876 3689999988 38999
Q ss_pred ecCCCCCCCCcHHhHHHHH----HHHHHHHHHhcCCch----------------hhhccHHHHHHHHHHHHHhhCCCeEE
Q 042733 99 EQNDIHSPHDTLYDFTHCL----YMFIEEGMELVELNP----------------FRQALFEQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~~~----~~~~~~~l~~l~l~~----------------~~~~~~GerqRv~iA~aL~~~p~lll 158 (531)
+|++. ++..||+|+.... ....+++++.+++.+ ..+.+.||||||+|||||+.+|++|+
T Consensus 72 ~Q~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll 150 (237)
T 2cbz_A 72 PQQAW-IQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYL 150 (237)
T ss_dssp CSSCC-CCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred cCCCc-CCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99976 4688999983210 111223333332211 12233499999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHH---HHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 159 RDEPISGLDARAATTVIRMVR---NTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~---~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|||||+|||+.++..+++.|+ +++ +|+|||++||+++. + ..||++++|++ |+++..|++
T Consensus 151 LDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~ 212 (237)
T 2cbz_A 151 FDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-GKISEMGSY 212 (237)
T ss_dssp EESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-TEEEEEECH
T ss_pred EeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-CEEEEeCCH
Confidence 999999999999999999985 343 48999999999874 4 46999999986 999998875
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=8.6e-33 Score=304.74 Aligned_cols=190 Identities=19% Similarity=0.253 Sum_probs=158.5
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++|++++|+.+++++|+|+|+.+++| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSICLDGHDVRDYKLTNLRR 417 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEhhhCCHHHHhc
Confidence 469999999999643367999999998887 99999999999998653 4689999998753 234677
Q ss_pred eEEEEecCCCCCCCCcHHhHHH------HHHHHHHHHHHhcCCchhhhc----------------cHHHHHHHHHHHHHh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH------CLYMFIEEGMELVELNPFRQA----------------LFEQRKRLTVAVEFV 151 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~------~~~~~~~~~l~~l~l~~~~~~----------------~~GerqRv~iA~aL~ 151 (531)
.+|||+|++.+++ .|++|+.. ...+.++++++.+++.+..++ +.|||||++|||||+
T Consensus 418 ~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~ 496 (582)
T 3b5x_A 418 HFALVSQNVHLFN-DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496 (582)
T ss_pred CeEEEcCCCcccc-ccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH
Confidence 8999999998886 59999832 123456778888887655432 239999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|++++|||||+|||+.+++.+.+.|+++.+ |+|+|+++|+++. + +.||++++|++ |+++..|+++
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~-G~i~~~g~~~ 563 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST-I-EQADEILVVDE-GEIIERGRHA 563 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999999999999999864 8999999999863 3 57999999986 9999999863
No 38
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.8e-32 Score=303.04 Aligned_cols=189 Identities=22% Similarity=0.277 Sum_probs=158.3
Q ss_pred EEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 28 ISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
++++|++++|+.+ ++++|+|+|+.+++| |||||||+|+|+|..++ .+|+|.++|.+... ..+++.
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~~i~~~~~~~~~~~ 419 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDP--ASGTISLDGHDIRQLNPVWLRSK 419 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCC--SEEEEEETTEETTTBCHHHHHHS
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcEEEECCEEhhhCCHHHHHhc
Confidence 8999999999643 246999999998888 99999999999998664 47999999987542 346778
Q ss_pred EEEEecCCCCCCCCcHHhHHH--------HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHH
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH--------CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEF 150 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~--------~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL 150 (531)
+|||+|++.+++ .|++|+.. ...+.++++++.+++.+..+ .+.|||||++|||||
T Consensus 420 i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral 498 (595)
T 2yl4_A 420 IGTVSQEPILFS-CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARAL 498 (595)
T ss_dssp EEEECSSCCCCS-SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHH
T ss_pred eEEEccCCcccC-CCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHH
Confidence 999999998886 59999831 22455777888888755422 233999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
+++|++|+|||||+|||+.+++.+.+.|+++.+ |+|+|+++|+++. + +.||++++|++ |+++..|++++
T Consensus 499 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~-G~i~~~g~~~~ 567 (595)
T 2yl4_A 499 LKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLST-I-KNANMVAVLDQ-GKITEYGKHEE 567 (595)
T ss_dssp HHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHH-H-HHSSEEEEEET-TEEEEEECSCC
T ss_pred HcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCHHH
Confidence 999999999999999999999999999999876 8999999999863 4 56999999986 99999998754
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.8e-32 Score=302.22 Aligned_cols=189 Identities=18% Similarity=0.230 Sum_probs=158.7
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..++++|++++|+.+++++|+|+|+.+++| |||||||+|+|+|..++ .+|+|.++|.+... ..+++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDLREYTLASLRN 417 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEETTTBCHHHHHH
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC--CCCeEEECCEEccccCHHHHHh
Confidence 458999999999633367999999999888 99999999999998664 47999999987532 34667
Q ss_pred eEEEEecCCCCCCCCcHHhHHHH------HHHHHHHHHHhcCCchhhhc----------------cHHHHHHHHHHHHHh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTHC------LYMFIEEGMELVELNPFRQA----------------LFEQRKRLTVAVEFV 151 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~~------~~~~~~~~l~~l~l~~~~~~----------------~~GerqRv~iA~aL~ 151 (531)
.+||++|++.+++ .|++|+... ..+.++++++.+++.+..++ +.|||||++|||||+
T Consensus 418 ~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 418 QVALVSQNVHLFN-DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp TEEEECSSCCCCS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred hCeEEccCCcCCC-CCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 8999999998887 599998321 23457778888887655432 239999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|++++|||||+|||+.+++.+.+.++++.+ |+|+|+++|+++. .+.||++++|++ |+++..|++
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~-G~i~~~g~~ 562 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVED-GIIVERGTH 562 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEET-TEEEEEECH
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999865 8999999999873 357999999986 999999985
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.7e-32 Score=302.06 Aligned_cols=190 Identities=20% Similarity=0.299 Sum_probs=155.9
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..++++|++++|+.+++++|+|+|+.+++| |||||||+|+|+|..++ .+|+|.++|.+... ..+++
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~~~~~~~~~~r~ 415 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHNIKDFLTGSLRN 415 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTEEGGGSCHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEEhhhCCHHHHhh
Confidence 469999999999755568999999998887 99999999999998764 47999999987643 34677
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhh----------------hccHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFR----------------QALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~----------------~~~~GerqRv~iA~aL~~ 152 (531)
.+|||+|++.+++. |++|+.. ...+.+.+.++..++.+.. +.+.|||||++|||||++
T Consensus 416 ~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~ 494 (578)
T 4a82_A 416 QIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494 (578)
T ss_dssp TEEEECSSCCCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred heEEEeCCCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence 89999999988865 9999821 1123345555555554322 223399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|++++|||||+|||+.+++.+.+.++++. +++|+|+++|+++. + ..||++++|++ |+++..|+++
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~-G~i~~~g~~~ 560 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIEN-GHIVETGTHR 560 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEET-TEEEEEECHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999885 47999999999874 4 56999999996 9999999863
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.98 E-value=1.7e-32 Score=302.36 Aligned_cols=191 Identities=16% Similarity=0.225 Sum_probs=154.9
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
...++++|++++|+.+++++|+|+|+.+++| |||||||+|+|+|..++ .+|+|.++|.+... ..++
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~i~g~~i~~~~~~~~r 416 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP--ERGRVEVDELDVRTVKLKDLR 416 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC--SEEEEEESSSBGGGBCHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEECCEEcccCCHHHHH
Confidence 3469999999999755678999999999887 99999999999998764 47999999988643 3467
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhh----------------hccHHHHHHHHHHHHHh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFR----------------QALFEQRKRLTVAVEFV 151 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~----------------~~~~GerqRv~iA~aL~ 151 (531)
+.+|||+|++.+++ .|++|+.. ...+.+.+.++..++.+.. +.+.|||||++|||||+
T Consensus 417 ~~i~~v~Q~~~lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 417 GHISAVPQETVLFS-GTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp HHEEEECSSCCCCS-EEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred hheEEECCCCcCcC-ccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 78999999998875 59999821 1112233444444433221 22339999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|++|+|||||++||+.+++++.+.|+++. +|+|+|+++|+++. ...||++++|++ |+++..|+++
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~-G~i~~~g~~~ 562 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADKILVLHE-GKVAGFGTHK 562 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSEEEEEET-TEEEEEECHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999874 58999999999863 458999999996 9999999864
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.98 E-value=3.8e-32 Score=300.33 Aligned_cols=189 Identities=23% Similarity=0.330 Sum_probs=155.3
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..++++|++++|+. ++++|+|+|+.+++| |||||||+|+|+|..++ .+|+|.++|.+... ..+++
T Consensus 353 ~~i~~~~v~~~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~i~~~~~~~~r~ 429 (598)
T 3qf4_B 353 GEIEFKNVWFSYDK-KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV--DRGQILVDGIDIRKIKRSSLRS 429 (598)
T ss_dssp CCEEEEEEECCSSS-SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC--SEEEEEETTEEGGGSCHHHHHH
T ss_pred CeEEEEEEEEECCC-CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCeEEEECCEEhhhCCHHHHHh
Confidence 46999999999963 457999999988877 99999999999998764 47999999987643 35677
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~ 152 (531)
.+|||+|++.+++ .|++|+.. ...+.+.+.++..++.+..+ .+.|||||++|||||++
T Consensus 430 ~i~~v~Q~~~lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~ 508 (598)
T 3qf4_B 430 SIGIVLQDTILFS-TTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA 508 (598)
T ss_dssp HEEEECTTCCCCS-SBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEeCCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 8999999998875 59999832 11233555666655544322 23399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|++|+|||||++||+.++..+.+.|+++. +|+|+|+++|+++. + ..||++++|++ |+++..|+++
T Consensus 509 ~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~-G~i~~~g~~~ 574 (598)
T 3qf4_B 509 NPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRD-GEIVEMGKHD 574 (598)
T ss_dssp CCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECS-SSEEECSCHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999985 58999999999984 4 45999999986 9999999863
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.97 E-value=1.6e-30 Score=262.01 Aligned_cols=176 Identities=18% Similarity=0.240 Sum_probs=131.0
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..++++|+++.+ +.+|+++|+.+.+| |||||||+|+|+|..+ +.+|+|.++| .++
T Consensus 39 ~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g----------~i~ 102 (290)
T 2bbs_A 39 DSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG----------RIS 102 (290)
T ss_dssp -----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS----------CEE
T ss_pred ceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC----------EEE
Confidence 458889998752 46899999888777 9999999999999876 3689999987 389
Q ss_pred EEecCCCCCCCCcHHhHHHHH---HHHHHHHHHhcCCchh----------------hhccHHHHHHHHHHHHHhhCCCeE
Q 042733 97 YCEQNDIHSPHDTLYDFTHCL---YMFIEEGMELVELNPF----------------RQALFEQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~~~---~~~~~~~l~~l~l~~~----------------~~~~~GerqRv~iA~aL~~~p~ll 157 (531)
|++|++.+++. ||+|+.... ....++.++.+++.+. .+.+.||||||+|||||+.+|++|
T Consensus 103 ~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ll 181 (290)
T 2bbs_A 103 FCSQNSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY 181 (290)
T ss_dssp EECSSCCCCSS-BHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEE
T ss_pred EEeCCCccCcc-cHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEE
Confidence 99999888774 999984310 1123344455555332 123349999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHH-HHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 158 SRDEPISGLDARAATTVIRMV-RNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L-~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||+|||+.++..+++.+ ++++ +|+|||++||+++ .+ ..||++++|++ |+++..|+++
T Consensus 182 lLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~-G~i~~~g~~~ 243 (290)
T 2bbs_A 182 LLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-GSSYFYGTFS 243 (290)
T ss_dssp EEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEET-TEEEEEECHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEEC-CeEEEeCCHH
Confidence 999999999999999999974 4554 4899999999976 34 46999999986 9999999863
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.96 E-value=1.5e-30 Score=309.93 Aligned_cols=190 Identities=22% Similarity=0.285 Sum_probs=158.2
Q ss_pred eEEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 26 HYISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
-.|+++||+++|+.+ +.++|+|+|+.++|| |||||||+++|.|..++ .+|+|.++|.+..+ ..+|
T Consensus 1075 g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~iDG~di~~i~~~~lR 1152 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT--LGGEIFIDGSEIKTLNPEHTR 1152 (1321)
T ss_dssp CCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC--SSSEEEETTEETTTBCHHHHH
T ss_pred CeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC--CCCEEEECCEEhhhCCHHHHH
Confidence 369999999999743 447999999999998 99999999999998653 36899999988643 5688
Q ss_pred ceEEEEecCCCCCCCCcHHhHH-------HHHHHHHHHHHHhcCCchhhh-------c---------cHHHHHHHHHHHH
Q 042733 93 RILGYCEQNDIHSPHDTLYDFT-------HCLYMFIEEGMELVELNPFRQ-------A---------LFEQRKRLTVAVE 149 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~-------~~~~~~~~~~l~~l~l~~~~~-------~---------~~GerqRv~iA~a 149 (531)
+.++||||++.++. -|++||. ....+.+.++++..++.+... + +.|||||++||||
T Consensus 1153 ~~i~~V~Qdp~LF~-gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A 1153 SQIAIVSQEPTLFD-CSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp TTEEEECSSCCCCS-EEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred hheEEECCCCEeeC-ccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence 99999999998875 6999982 112345667777777654322 2 2289999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+++|+||+||||||+||+.+.+.+.+.|+++. +|+|+|+++|.++. ...||+|++|++ |+++..|+++
T Consensus 1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~-G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1232 LVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSN-GTIIEKGTHT 1300 (1321)
T ss_dssp HHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESS-SSEEEEECHH
T ss_pred HHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999998764 48999999999873 567999999986 9999999973
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.96 E-value=6.8e-30 Score=304.26 Aligned_cols=190 Identities=22% Similarity=0.302 Sum_probs=158.9
Q ss_pred eEEEEEeEEEEEeC-CCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 26 HYISLNEIVYSVDM-PQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~-~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
..|+++|++|+|+. +++++|+|+|+.++|| |||||||+++|.|..++ .+|+|.++|.+.++ ..+|
T Consensus 414 g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~--~~G~I~idG~~i~~~~~~~lr 491 (1321)
T 4f4c_A 414 GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV--LKGKITIDGVDVRDINLEFLR 491 (1321)
T ss_dssp CCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC--SEEEEEETTEETTTSCHHHHH
T ss_pred CcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc--ccCcccCCCccchhccHHHHh
Confidence 46999999999975 3468999999999999 99999999999998764 47999999987643 4578
Q ss_pred ceEEEEecCCCCCCCCcHHhHH-----HHHHHHHHHHHHhcCCchhhhc-------c---------HHHHHHHHHHHHHh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFT-----HCLYMFIEEGMELVELNPFRQA-------L---------FEQRKRLTVAVEFV 151 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~-----~~~~~~~~~~l~~l~l~~~~~~-------~---------~GerqRv~iA~aL~ 151 (531)
+.+|||+|++.++ +.|++||. ....+.+.++++..++.+..+. . .|||||++||||++
T Consensus 492 ~~i~~v~Q~~~Lf-~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~ 570 (1321)
T 4f4c_A 492 KNVAVVSQEPALF-NCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV 570 (1321)
T ss_dssp HHEEEECSSCCCC-SEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred hcccccCCcceee-CCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence 8999999999876 57999982 1223456666666665443322 2 28999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|++++||||||+||+.+.+.+.+.|+++. +|+|+|+++|+++ ....||+|++|++ |+++..|+.+
T Consensus 571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~~-G~ive~Gth~ 637 (1321)
T 4f4c_A 571 RNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCKN-GQVVEVGDHR 637 (1321)
T ss_dssp TCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEET-TEEEEEECHH
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHH--HHHhCCEEEEeeC-CeeeccCCHH
Confidence 9999999999999999999999999999876 4899999999987 3678999999986 9999999864
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.96 E-value=2.4e-29 Score=298.77 Aligned_cols=190 Identities=21% Similarity=0.282 Sum_probs=152.7
Q ss_pred eEEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 26 HYISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
..|+++|++++|+.. +.++|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+... ..++
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~--~~G~i~i~g~~i~~~~~~~~r 463 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP--LDGMVSIDGQDIRTINVRYLR 463 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC--SEEEEEETTEEGGGSCHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEHHhCCHHHHH
Confidence 468999999999743 347999999999888 99999999999998764 47999999987543 4567
Q ss_pred ceEEEEecCCCCCCCCcHHhHHHH-----HHHHHHHHHHhcCCchh----------------hhccHHHHHHHHHHHHHh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTHC-----LYMFIEEGMELVELNPF----------------RQALFEQRKRLTVAVEFV 151 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~~-----~~~~~~~~l~~l~l~~~----------------~~~~~GerqRv~iA~aL~ 151 (531)
+.+|||+|++.+++. |++|+... ..+.+.+.++..++.+. .+.+.|||||++|||||+
T Consensus 464 ~~i~~v~Q~~~l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 464 EIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp HHEEEECSSCCCCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred hheEEEcCCCccCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 789999999988865 99998321 12233444444333221 122349999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|++|+||||||+||+.+.+.+.+.++++. +|+|+|+++|+++ .+ ..||+|++|++ |++++.|+.+
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~i-~~~d~i~vl~~-G~i~~~g~~~ 609 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS-TV-RNADVIAGFDG-GVIVEQGNHD 609 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH-HH-TTCSEEEECSS-SCCCCEECHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999998764 5899999999986 34 55999999986 9999999864
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=1.3e-28 Score=271.15 Aligned_cols=183 Identities=20% Similarity=0.253 Sum_probs=148.6
Q ss_pred ceEEEEEeEEEEEeCCCccccc---------cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceE
Q 042733 25 PHYISLNEIVYSVDMPQIGDLN---------SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARIL 95 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~---------~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~i 95 (531)
...++++|+++.|+. ..|+ ++.+.+||||||||||+|+|+|..++ .+|+|.+ .+.+
T Consensus 355 ~~~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----------~~~i 419 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----------DLTV 419 (607)
T ss_dssp CEEEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC----------CCCE
T ss_pred ceEEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE----------eeEE
Confidence 457999999998852 2344 46678888899999999999997543 2355543 2468
Q ss_pred EEEecCCCCCCCCcHHhHHHHH-------HHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCC
Q 042733 96 GYCEQNDIHSPHDTLYDFTHCL-------YMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPI 163 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~~~-------~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPt 163 (531)
||++|+....+.+||.|+.... ...++++++.+++.+..++.+ ||||||+||++|+++|++|+|||||
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt 499 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS 499 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 9999998777889998863211 235678899999987777665 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEcc-CceeeecCCCCC
Q 042733 164 SGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQ-VGQEISVGPLGP 223 (531)
Q Consensus 164 sgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~-~G~~v~~G~~~~ 223 (531)
+|||+.++..+.+.|+++++ +|.|||++|||++ .+...|||+++|++ .|+++..|++++
T Consensus 500 ~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 500 AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHH
Confidence 99999999999999999975 5999999999987 56778999999973 267777888753
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.96 E-value=8.3e-29 Score=294.22 Aligned_cols=189 Identities=23% Similarity=0.306 Sum_probs=152.1
Q ss_pred eEEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 26 HYISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
..++++||+++|+.. +.++|+|+|+.++|| |||||||+++|+|..++ .+|+|.++|.+... ..+|
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p--~~G~I~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP--MAGSVFLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC--SEEEEESSSSCTTSSCHHHHT
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEEcccCCHHHHH
Confidence 468999999999642 246999999998887 99999999999998664 47999999987642 4567
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH-------HHHHHHHHHHHhcCCchhh----------------hccHHHHHHHHHHHH
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH-------CLYMFIEEGMELVELNPFR----------------QALFEQRKRLTVAVE 149 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~-------~~~~~~~~~l~~l~l~~~~----------------~~~~GerqRv~iA~a 149 (531)
+.+|||+|++.++ ..|++|+.. ...+.+.+.++..++.+.. +.+.||||||+||||
T Consensus 1107 ~~i~~v~Q~~~l~-~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A 1107 AQLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp TSCEEEESSCCCC-SSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred hceEEECCCCccc-cccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence 8899999998766 579999821 1122334444444443221 223399999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+++|++|+|||||+|||+.+++.+.+.|++. .+|+|+|+++|+++. + ..||||++|++ |+++..|++
T Consensus 1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~-G~i~~~g~~ 1253 (1284)
T 3g5u_A 1186 LVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQN-GKVKEHGTH 1253 (1284)
T ss_dssp HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEET-BEEEEEECH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999885 458999999999984 4 56999999996 999999986
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.95 E-value=4e-28 Score=264.48 Aligned_cols=183 Identities=20% Similarity=0.252 Sum_probs=148.2
Q ss_pred ceEEEEEeEEEEEeCCCccccc---------cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceE
Q 042733 25 PHYISLNEIVYSVDMPQIGDLN---------SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARIL 95 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~---------~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~i 95 (531)
...++++|+++.|+. ..|+ ++.+.+||||||||||+|+|+|..++ .+|+|.+ ...+
T Consensus 285 ~~~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----------~~~i 349 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----------DLTV 349 (538)
T ss_dssp CEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC----------CCCE
T ss_pred CeEEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEE----------CceE
Confidence 457999999998842 2344 46677888899999999999997553 2455543 2458
Q ss_pred EEEecCCCCCCCCcHHhHHHHH-------HHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCC
Q 042733 96 GYCEQNDIHSPHDTLYDFTHCL-------YMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPI 163 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~~~-------~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPt 163 (531)
||++|+....+.+||.++.... ...++++++.+++.+..++.+ ||||||+||++|+.+|++|+|||||
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt 429 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPS 429 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 9999998777889998763211 234677888999987766665 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEcc-CceeeecCCCCC
Q 042733 164 SGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQ-VGQEISVGPLGP 223 (531)
Q Consensus 164 sgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~-~G~~v~~G~~~~ 223 (531)
+|||+.++..+.+.|+++++ .|.|||++|||++ ++...|||+++|++ .|+++..|++++
T Consensus 430 ~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 430 AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHH
Confidence 99999999999999999974 5999999999987 57778999999973 267778898853
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.95 E-value=1.1e-27 Score=260.66 Aligned_cols=196 Identities=17% Similarity=0.207 Sum_probs=150.3
Q ss_pred ceEEEEEeEEEEEeCCCccccc---------cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceE
Q 042733 25 PHYISLNEIVYSVDMPQIGDLN---------SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARIL 95 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~---------~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~i 95 (531)
...++++|+++.|+. ..|+ .+.+.+||||||||||+|+|+|..++ .+|+|.+++ +.+
T Consensus 267 ~~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~---------~~i 332 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEK---------QIL 332 (538)
T ss_dssp CEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSC---------CCE
T ss_pred cceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECC---------eee
Confidence 356899999998852 2333 46778888899999999999997653 357776543 358
Q ss_pred EEEecCCCCCCCCcHHhHHHH--------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 96 GYCEQNDIHSPHDTLYDFTHC--------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~~--------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEP 162 (531)
+|++|+....+..||.++... ....++++++.+++.+..++.+ ||||||+|||||+.+|++||||||
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEP 412 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQP 412 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999998776678899987322 1234677888899887777665 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEcc-CceeeecCCCCCCchhHHHHHHhh
Q 042733 163 ISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQ-VGQEISVGPLGPSSIHLISYFEKI 235 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~-~G~~v~~G~~~~~~~~~~~~f~~~ 235 (531)
|+|||+.++..+++.|+++++ .|.|||++|||++ ++..+|||+++|++ .|+....+++.........++..+
T Consensus 413 T~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 413 SSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486 (538)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHHHHHHHHHhhc
Confidence 999999999999999999986 5999999999987 57778999999973 133444455433222333444443
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.6e-27 Score=258.62 Aligned_cols=165 Identities=15% Similarity=0.116 Sum_probs=134.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHH-------HHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHC-------LYM 119 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~-------~~~ 119 (531)
.+.+.+||||||||||+|+|+|..++. +|+ .. .+..++|++|+.......||+++... ...
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~------~~----~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~ 446 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPD--EGQ------DI----PKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQ 446 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCS--BCC------CC----CSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC--CCc------Cc----cCCcEEEecccccccCCccHHHHHHHHhhcccccHH
Confidence 466788899999999999999976531 232 11 13458999998776667799886221 123
Q ss_pred HHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEec
Q 042733 120 FIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIH 193 (531)
Q Consensus 120 ~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H 193 (531)
.++++++.+++.+..++.+ ||||||+|||+|+.+|++|+|||||+|||+.++..++++|+++++ +|.|||++||
T Consensus 447 ~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtH 526 (608)
T 3j16_B 447 FQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH 526 (608)
T ss_dssp HHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECS
T ss_pred HHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 5677889999988777665 999999999999999999999999999999999999999999874 5999999999
Q ss_pred CCchHHHhccCeEEEEcc-CceeeecCCCCCC
Q 042733 194 QPSIDIFYSFDELFLLKQ-VGQEISVGPLGPS 224 (531)
Q Consensus 194 ~~~~~i~~~~d~v~lL~~-~G~~v~~G~~~~~ 224 (531)
|++ ++...|||+++|++ .|+++..|+|++.
T Consensus 527 dl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~ 557 (608)
T 3j16_B 527 DFI-MATYLADKVIVFEGIPSKNAHARAPESL 557 (608)
T ss_dssp CHH-HHHHHCSEEEECEEETTTEEECCCCEEH
T ss_pred CHH-HHHHhCCEEEEEeCCCCeEEecCChHHH
Confidence 987 57788999999974 2789999998653
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.94 E-value=2.8e-27 Score=257.76 Aligned_cols=180 Identities=21% Similarity=0.196 Sum_probs=133.1
Q ss_pred EEE-EeEEEEEeCCCccccccEE--------EEEcCCCchHHHHHHHHhCCCCCceEEEEE---------EEcCcccch-
Q 042733 28 ISL-NEIVYSVDMPQIGDLNSLS--------GAFRPGGAGKTTLMDVLAGRKPGGYITRNI---------TVSGYPEKQ- 88 (531)
Q Consensus 28 l~~-~~ls~~~~~~~~~iL~~vs--------~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i---------~~~g~~~~~- 88 (531)
.++ +||+++|+. ...+|+++| +.+||||||||||+|+|+|..++ .+|++ .++|.+...
T Consensus 21 ~~~~~~ls~~yg~-~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p--~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGV-NAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIP--NLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECST-TCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCC--CTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECC-ccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCccCcchhhhHHhhCCccHHHH
Confidence 355 488888852 123666664 56677799999999999996432 12332 234543321
Q ss_pred --h--hhcceEEEEecCCCCCCC---CcHHhHHHHH--HHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 89 --E--TFARILGYCEQNDIHSPH---DTLYDFTHCL--YMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 89 --~--~~~~~igyv~Q~~~~~~~---ltv~e~~~~~--~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
. ..+..+++++|+....+. .|+.++.... ..+++++++.+|+.+..++.+ ||||||+||+||+.+|
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P 177 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNA 177 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 1 112357899887544332 3777653211 235788999999987766655 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
++|||||||+|||+.++..+.+.|++++++|.|||++||+++ .+...||++++|++
T Consensus 178 ~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl~~ 233 (538)
T 1yqt_A 178 TFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVVYG 233 (538)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEE
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcC
Confidence 999999999999999999999999999888999999999976 57778999999974
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.93 E-value=2.9e-27 Score=260.50 Aligned_cols=177 Identities=21% Similarity=0.199 Sum_probs=133.6
Q ss_pred EeEEEEEeCCCccccccEE--------EEEcCCCchHHHHHHHHhCCCCCceEEEEE---------EEcCcccch---h-
Q 042733 31 NEIVYSVDMPQIGDLNSLS--------GAFRPGGAGKTTLMDVLAGRKPGGYITRNI---------TVSGYPEKQ---E- 89 (531)
Q Consensus 31 ~~ls~~~~~~~~~iL~~vs--------~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i---------~~~g~~~~~---~- 89 (531)
+|++++|+. ...+|+++| +.+||||||||||||+|+|..++ .+|++ .++|.+... .
T Consensus 95 ~~ls~~yg~-~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p--~~G~~~~~~~~~~~~~~G~~~~~~~~~~ 171 (607)
T 3bk7_A 95 EDCVHRYGV-NAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIP--NLCEDNDSWDNVIRAFRGNELQNYFERL 171 (607)
T ss_dssp GSEEEECST-TCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSCC--CTTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred CCeEEEECC-CCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCCC--CCCccccccchhhheeCCEehhhhhhhh
Confidence 788998853 113666554 66777799999999999996532 12332 234544321 0
Q ss_pred -hhcceEEEEecCCCCCC---CCcHHhHHHHH--HHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 90 -TFARILGYCEQNDIHSP---HDTLYDFTHCL--YMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 90 -~~~~~igyv~Q~~~~~~---~ltv~e~~~~~--~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
..+..+++++|.....+ ..||.|+.... ..+++++++.+|+.+..++.+ ||||||+||+||+.+|++|+
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLl 251 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYF 251 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred hhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 11345788888643322 23887763211 235788999999988777765 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
|||||+|||+.++..+.+.|++++++|.|||++|||++ .+...+|++++|.+
T Consensus 252 LDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~ 303 (607)
T 3bk7_A 252 FDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYG 303 (607)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEES
T ss_pred EECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECC
Confidence 99999999999999999999999878999999999976 46678999999973
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.93 E-value=7.3e-26 Score=258.09 Aligned_cols=97 Identities=22% Similarity=0.283 Sum_probs=80.9
Q ss_pred HHHHHHHHhcCCch-h-hhcc-----HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEE
Q 042733 119 MFIEEGMELVELNP-F-RQAL-----FEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCT 191 (531)
Q Consensus 119 ~~~~~~l~~l~l~~-~-~~~~-----~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~ 191 (531)
..+++.++.+|+.+ . .++. .||||||+|||+|+.+|++|+|||||+|||+.+...+.+.|+++ |.|||++
T Consensus 878 ~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiI 954 (986)
T 2iw3_A 878 KEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIII 954 (986)
T ss_dssp HHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEE
T ss_pred HHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEE
Confidence 45778899999974 3 3433 39999999999999999999999999999999999999888654 6799999
Q ss_pred ecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 192 IHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 192 ~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
||+++ .+...||++++|.+ |+++..|+
T Consensus 955 SHD~e-~v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 955 THSAE-FTKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp CSCHH-HHTTTCCEEECCBT-TBCCC---
T ss_pred ECCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 99976 46678999999986 99988775
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.93 E-value=1.6e-25 Score=255.24 Aligned_cols=176 Identities=18% Similarity=0.207 Sum_probs=140.8
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..+...|++++|+ ++.+|+|+|+.+.+| |||||||||+|+| | . ++|.+... ...++
T Consensus 434 ~~L~~~~ls~~yg--~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag----G----~--i~g~~~~~---~~~~~ 498 (986)
T 2iw3_A 434 EDLCNCEFSLAYG--AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN----G----Q--VDGFPTQE---ECRTV 498 (986)
T ss_dssp CEEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH----T----C--STTCCCTT---TSCEE
T ss_pred ceeEEeeEEEEEC--CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC----C----C--cCCCcccc---ceeEE
Confidence 3577779999995 467999999877766 9999999999995 1 1 13333211 12368
Q ss_pred EEecCC-CCCCCCcHHhHHHH----HHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 042733 97 YCEQND-IHSPHDTLYDFTHC----LYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISG 165 (531)
Q Consensus 97 yv~Q~~-~~~~~ltv~e~~~~----~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsg 165 (531)
|++|+. ..++.+|+.|+... ...++++.++.+|+. +..++.+ ||||||+||++|+.+|++|||||||+|
T Consensus 499 ~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~ 578 (986)
T 2iw3_A 499 YVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNH 578 (986)
T ss_dssp ETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTT
T ss_pred EEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence 999874 67788999987431 045678899999994 5555544 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceee-ecCCC
Q 042733 166 LDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI-SVGPL 221 (531)
Q Consensus 166 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v-~~G~~ 221 (531)
||+.++..+.+.|++ .|.|||++||+++ .+.+.||++++|++ |+++ +.|++
T Consensus 579 LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G~~ 630 (986)
T 2iw3_A 579 LDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKGNF 630 (986)
T ss_dssp CCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEESCH
T ss_pred CCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCCCH
Confidence 999999999999988 5899999999976 56778999999986 8986 67875
No 56
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.92 E-value=3.7e-26 Score=248.51 Aligned_cols=166 Identities=19% Similarity=0.183 Sum_probs=122.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEE-----------EEcCcccch---hhhc--ceEEEEecCCCC---CC
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNI-----------TVSGYPEKQ---ETFA--RILGYCEQNDIH---SP 106 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i-----------~~~g~~~~~---~~~~--~~igyv~Q~~~~---~~ 106 (531)
..+.+.+||||||||||+|+|+|..++ .+|++ .++|.+... .... ..+....|.... ..
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl~~p--~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGEIIP--NFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFL 102 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSCC--CTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC--CCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhc
Confidence 468999999999999999999996542 13444 344543321 0011 123333333221 12
Q ss_pred CCcHHhHHHH--HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 042733 107 HDTLYDFTHC--LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVR 179 (531)
Q Consensus 107 ~ltv~e~~~~--~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~ 179 (531)
..++.+.... ....++++++.+++.+..++.+ ||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+
T Consensus 103 ~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~ 182 (538)
T 3ozx_A 103 KGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIR 182 (538)
T ss_dssp CSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred cCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 2467664221 1235778899999988777766 99999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEEEecCCchHHHhccCeEEEEccCceee
Q 042733 180 NTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI 216 (531)
Q Consensus 180 ~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v 216 (531)
++++ |+|||+++|+++ ++...||++++|++ |...
T Consensus 183 ~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~-~~~~ 216 (538)
T 3ozx_A 183 ELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYG-ESSV 216 (538)
T ss_dssp HHCT-TSEEEEECSCHH-HHHHHCSEEEEEEE-ETTT
T ss_pred HHhC-CCEEEEEEeChH-HHHhhCCEEEEecC-Cccc
Confidence 9976 999999999986 57788999999974 5433
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.8e-25 Score=245.97 Aligned_cols=181 Identities=15% Similarity=0.188 Sum_probs=129.1
Q ss_pred eEEEEEeCCCcccc--------ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEE-----------EcCcccch---h
Q 042733 32 EIVYSVDMPQIGDL--------NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNIT-----------VSGYPEKQ---E 89 (531)
Q Consensus 32 ~ls~~~~~~~~~iL--------~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~-----------~~g~~~~~---~ 89 (531)
|++++|+.. ...| ..+.+.+||||||||||||+|+|..++ .+|++. +.|..... .
T Consensus 82 ~~~~~Y~~~-~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P--~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN-SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKP--NLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT-SCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCC--CTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC-ceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCC--CCceEecccchhhhhheecChhhhhhhhH
Confidence 577888532 2233 468899999999999999999997543 124431 22222110 0
Q ss_pred hhcce--EEEEecCCCC------CCCCcHHhHHHH----HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhh
Q 042733 90 TFARI--LGYCEQNDIH------SPHDTLYDFTHC----LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVA 152 (531)
Q Consensus 90 ~~~~~--igyv~Q~~~~------~~~ltv~e~~~~----~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~ 152 (531)
...+. ..+.+|.... -+..++.+.... ....++++++.+++.+..++.+ ||||||+||+||+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~ 238 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQ 238 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHS
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHh
Confidence 01111 1233332211 122345543211 1256888999999988877765 99999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeee
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS 217 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~ 217 (531)
+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|.. |..++
T Consensus 239 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~~-~~~~~ 301 (608)
T 3j16_B 239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIYG-VPSVY 301 (608)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEES-CTTTE
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Ccccc
Confidence 99999999999999999999999999999888999999999987 57788999999974 65544
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.91 E-value=2.3e-25 Score=249.34 Aligned_cols=96 Identities=20% Similarity=0.311 Sum_probs=83.5
Q ss_pred HHHhcCCchh-hhccH-----HHHHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 124 GMELVELNPF-RQALF-----EQRKRLTVAVEFVANPS--IISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 124 ~l~~l~l~~~-~~~~~-----GerqRv~iA~aL~~~p~--lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
.++.+|+.+. .++.+ ||||||+|||||+++|+ +|||||||+|||+.++..+++.|++++++|.|||++|||+
T Consensus 185 ~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 185 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp HHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4777887653 34433 99999999999999998 9999999999999999999999999988899999999997
Q ss_pred chHHHhccCeEEEE------ccCceeeecCCCC
Q 042733 196 SIDIFYSFDELFLL------KQVGQEISVGPLG 222 (531)
Q Consensus 196 ~~~i~~~~d~v~lL------~~~G~~v~~G~~~ 222 (531)
+ ....||++++| ++ |++++.|+++
T Consensus 265 ~--~~~~~d~ii~l~~g~~~~~-G~i~~~g~~~ 294 (670)
T 3ux8_A 265 D--TMLAADYLIDIGPGAGIHG-GEVVAAGTPE 294 (670)
T ss_dssp H--HHHHCSEEEEECSSSGGGC-CSEEEEECHH
T ss_pred H--HHhhCCEEEEecccccccC-CEEEEecCHH
Confidence 6 34569999999 64 9999999874
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.90 E-value=6.3e-24 Score=237.78 Aligned_cols=112 Identities=22% Similarity=0.217 Sum_probs=90.4
Q ss_pred CCcHHhHHH-----HHHHHHHHHHHhcCCch-hhhcc-----HHHHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHH
Q 042733 107 HDTLYDFTH-----CLYMFIEEGMELVELNP-FRQAL-----FEQRKRLTVAVEFVANP---SIISRDEPISGLDARAAT 172 (531)
Q Consensus 107 ~ltv~e~~~-----~~~~~~~~~l~~l~l~~-~~~~~-----~GerqRv~iA~aL~~~p---~lllLDEPtsgLD~~~~~ 172 (531)
.+||.|+.. ....+..+.++.+++.. ..++. .||||||+|||||+++| ++|+|||||+|||+.++.
T Consensus 504 ~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~ 583 (670)
T 3ux8_A 504 DMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIA 583 (670)
T ss_dssp TSBHHHHHHHTTTCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHH
T ss_pred hCCHHHHHHHHHHhhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHH
Confidence 357766521 11234556777888753 22333 39999999999999987 499999999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE------ccCceeeecCCC
Q 042733 173 TVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL------KQVGQEISVGPL 221 (531)
Q Consensus 173 ~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL------~~~G~~v~~G~~ 221 (531)
.++++|++++++|.|||++|||++ ....||++++| ++ |++++.|++
T Consensus 584 ~i~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~i~~l~~~~g~~~-G~i~~~g~~ 635 (670)
T 3ux8_A 584 RLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRG-GQIVAVGTP 635 (670)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGC-CEEEEEECH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHH--HHHhCCEEEEecCCcCCCC-CEEEEecCH
Confidence 999999999888999999999986 34679999999 64 999999986
No 60
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.88 E-value=2.6e-22 Score=211.87 Aligned_cols=79 Identities=20% Similarity=0.192 Sum_probs=71.5
Q ss_pred cHHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE----c
Q 042733 137 LFEQRKRLTVAVEFVANP--SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL----K 210 (531)
Q Consensus 137 ~~GerqRv~iA~aL~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL----~ 210 (531)
+.|||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||++||++. +...||++++| .
T Consensus 297 SgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d~i~~l~k~~~ 373 (415)
T 4aby_A 297 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAHHHYKVEKQVE 373 (415)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCSEEEEEEEEEE
T ss_pred CHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcCeEEEEEEecc
Confidence 559999999999999999 9999999999999999999999999997 5899999999974 56789999999 7
Q ss_pred cCceeeecC
Q 042733 211 QVGQEISVG 219 (531)
Q Consensus 211 ~~G~~v~~G 219 (531)
+ |+++...
T Consensus 374 ~-G~~~~~~ 381 (415)
T 4aby_A 374 D-GRTVSHV 381 (415)
T ss_dssp T-TEEEEEE
T ss_pred C-CceEEEE
Confidence 5 8877553
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.87 E-value=3.7e-22 Score=226.06 Aligned_cols=100 Identities=23% Similarity=0.260 Sum_probs=86.4
Q ss_pred HHHHHHHhcCCch-hhhccH-----HHHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEE
Q 042733 120 FIEEGMELVELNP-FRQALF-----EQRKRLTVAVEFVANP---SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVC 190 (531)
Q Consensus 120 ~~~~~l~~l~l~~-~~~~~~-----GerqRv~iA~aL~~~p---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~ 190 (531)
...+.++.++|.. ..++.+ ||||||+||++|+.+| ++|||||||+|||+.++..+++.|++++++|.|||+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3567889999976 444443 9999999999999875 999999999999999999999999999888999999
Q ss_pred EecCCchHHHhccCeEEEEc-----cCceeeecCCC
Q 042733 191 TIHQPSIDIFYSFDELFLLK-----QVGQEISVGPL 221 (531)
Q Consensus 191 ~~H~~~~~i~~~~d~v~lL~-----~~G~~v~~G~~ 221 (531)
++|+++. ...||++++|. ++|++++.|++
T Consensus 904 isHdl~~--i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 904 IEHNLDV--IKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp ECCCHHH--HTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred EcCCHHH--HHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 9999763 46799999993 24999999985
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.87 E-value=4.4e-22 Score=224.98 Aligned_cols=101 Identities=20% Similarity=0.252 Sum_probs=87.6
Q ss_pred HHHHHHHHhcCCchh-hhccH-----HHHHHHHHHHHHhhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 042733 119 MFIEEGMELVELNPF-RQALF-----EQRKRLTVAVEFVAN---PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVV 189 (531)
Q Consensus 119 ~~~~~~l~~l~l~~~-~~~~~-----GerqRv~iA~aL~~~---p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi 189 (531)
.++.+.++.++|... .++.+ ||||||+||++|+.+ |++|||||||+|||+.++..+++.|++++++|.|||
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 356788999999763 34433 999999999999996 799999999999999999999999999998899999
Q ss_pred EEecCCchHHHhccCeEEEEc-----cCceeeecCCC
Q 042733 190 CTIHQPSIDIFYSFDELFLLK-----QVGQEISVGPL 221 (531)
Q Consensus 190 ~~~H~~~~~i~~~~d~v~lL~-----~~G~~v~~G~~ 221 (531)
+++|+++ .+ ..||++++|. ++|++++.|++
T Consensus 788 visHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 788 AVEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTP 822 (842)
T ss_dssp EECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred EEcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCH
Confidence 9999976 34 7899999993 24999999985
No 63
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.86 E-value=8.9e-22 Score=224.22 Aligned_cols=101 Identities=20% Similarity=0.251 Sum_probs=86.5
Q ss_pred HHHHHHHHhcCCchhh------hccHHHHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 042733 119 MFIEEGMELVELNPFR------QALFEQRKRLTVAVEFVANP---SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVV 189 (531)
Q Consensus 119 ~~~~~~l~~l~l~~~~------~~~~GerqRv~iA~aL~~~p---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi 189 (531)
.++.+.++.+||.... ..+.||||||+||++|+++| ++|||||||+|||+.+++.+++.|++++++|.|||
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 3566788888886432 23349999999999999876 79999999999999999999999999988899999
Q ss_pred EEecCCchHHHhccCeEEEE------ccCceeeecCCCC
Q 042733 190 CTIHQPSIDIFYSFDELFLL------KQVGQEISVGPLG 222 (531)
Q Consensus 190 ~~~H~~~~~i~~~~d~v~lL------~~~G~~v~~G~~~ 222 (531)
+++|+++ ....||+|++| + +|++++.|+++
T Consensus 863 vI~HdL~--~i~~ADrIivLgp~gg~~-~G~Iv~~Gtpe 898 (916)
T 3pih_A 863 VIEHNLD--VIKNADHIIDLGPEGGKE-GGYIVATGTPE 898 (916)
T ss_dssp EECCCHH--HHTTCSEEEEEESSSGGG-CCEEEEEESHH
T ss_pred EEeCCHH--HHHhCCEEEEecCCCCCC-CCEEEEEcCHH
Confidence 9999985 34569999999 6 59999999874
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.86 E-value=1.7e-21 Score=221.37 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=86.1
Q ss_pred HHHHHHHhcCCch-hhhccH-----HHHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEE
Q 042733 120 FIEEGMELVELNP-FRQALF-----EQRKRLTVAVEFVANP---SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVC 190 (531)
Q Consensus 120 ~~~~~l~~l~l~~-~~~~~~-----GerqRv~iA~aL~~~p---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~ 190 (531)
...+.++.+||.. ..++.+ ||||||+||++|+.+| ++|||||||+|||+.++..+++.|++++++|.|||+
T Consensus 842 ~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 921 (993)
T 2ygr_A 842 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIV 921 (993)
T ss_dssp HHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3467888899876 344443 9999999999999875 999999999999999999999999999888999999
Q ss_pred EecCCchHHHhccCeEEEEc-----cCceeeecCCC
Q 042733 191 TIHQPSIDIFYSFDELFLLK-----QVGQEISVGPL 221 (531)
Q Consensus 191 ~~H~~~~~i~~~~d~v~lL~-----~~G~~v~~G~~ 221 (531)
++|+++. ...||++++|. ++|++++.|++
T Consensus 922 isHdl~~--i~~aDrIivL~p~gg~~~G~Iv~~G~~ 955 (993)
T 2ygr_A 922 IEHNLDV--IKTSDWIIDLGPEGGAGGGTVVAQGTP 955 (993)
T ss_dssp ECCCHHH--HTTCSEEEEEESSSTTSCSEEEEEECH
T ss_pred EcCCHHH--HHhCCEEEEECCCcCCCCCEEEEecCH
Confidence 9999763 46799999993 25999999986
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.83 E-value=8e-23 Score=218.15 Aligned_cols=163 Identities=12% Similarity=0.015 Sum_probs=121.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEE-E-EEEcCcccchhhhcceEEEEecCCC---CCCCCcHHhHHH------
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITR-N-ITVSGYPEKQETFARILGYCEQNDI---HSPHDTLYDFTH------ 115 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G-~-i~~~g~~~~~~~~~~~igyv~Q~~~---~~~~ltv~e~~~------ 115 (531)
.+.+.+||||||||||+|+|+|...+ .+| + +.++|. .++.++|++|+.. +.+.+|++++.-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~~p--~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~ 210 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYALK--FNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQLPTWGQSLTS 210 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTTHH--HHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBS
T ss_pred CEEEEECCCCCCHHHHHHHHhCcccc--cCCceeEEEcCC------ccCCeeeeccchhhcccccccchhhhhccccccc
Confidence 57789999999999999999998642 357 7 888872 2567899999874 344567765320
Q ss_pred --HHHHHHHHHHHhcCCchhhh---ccHHHHHHHHHHHH--HhhCCCe----EEEeC-CCCCCCHHHHHHHHHHHHHHHH
Q 042733 116 --CLYMFIEEGMELVELNPFRQ---ALFEQRKRLTVAVE--FVANPSI----ISRDE-PISGLDARAATTVIRMVRNTVD 183 (531)
Q Consensus 116 --~~~~~~~~~l~~l~l~~~~~---~~~GerqRv~iA~a--L~~~p~l----llLDE-PtsgLD~~~~~~i~~~L~~l~~ 183 (531)
.....+.++++.+|+.+..+ .+.||||||+||++ |+.+|++ ||||| ||+|||+. ...+.+++++
T Consensus 211 ~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~--- 286 (460)
T 2npi_A 211 GATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK--- 286 (460)
T ss_dssp SCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---
T ss_pred CcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH---
Confidence 00123445667778876554 22399999999999 9999999 99999 99999999 5445444443
Q ss_pred cCCeEEEEecCCc--h---HHHhccCe-----EEEEccCceeeecCCCC
Q 042733 184 MGRTVVCTIHQPS--I---DIFYSFDE-----LFLLKQVGQEISVGPLG 222 (531)
Q Consensus 184 ~g~tvi~~~H~~~--~---~i~~~~d~-----v~lL~~~G~~v~~G~~~ 222 (531)
.+.|+|+++|+.+ . ++..++|+ +++|+++|+++ .|+++
T Consensus 287 ~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~ 334 (460)
T 2npi_A 287 LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDV 334 (460)
T ss_dssp TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHH
T ss_pred hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHH
Confidence 3889999999976 2 34568999 99998238898 88764
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.83 E-value=6.2e-20 Score=190.81 Aligned_cols=77 Identities=14% Similarity=0.260 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHh------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 138 FEQRKRLTVAVEFV------ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 138 ~GerqRv~iA~aL~------~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
.||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++++|.|||++||+++ ....+|++++|++
T Consensus 282 gGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~~~l~~ 359 (365)
T 3qf7_A 282 GGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRKLRITG 359 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCEEEEET
T ss_pred HHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEEEEEEC
Confidence 39999999999999 799999999999999999999999999999888999999999975 3677999999986
Q ss_pred Cceeee
Q 042733 212 VGQEIS 217 (531)
Q Consensus 212 ~G~~v~ 217 (531)
|+++.
T Consensus 360 -G~i~~ 364 (365)
T 3qf7_A 360 -GVVVN 364 (365)
T ss_dssp -TEEC-
T ss_pred -CEEEe
Confidence 88864
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.82 E-value=2.8e-23 Score=199.32 Aligned_cols=130 Identities=18% Similarity=0.153 Sum_probs=88.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCC--CceEEEEEEEcCcccchhhhcceEEEEecCC--CCCCCC-cHHhHHH--HHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKP--GGYITRNITVSGYPEKQETFARILGYCEQND--IHSPHD-TLYDFTH--CLYM 119 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~--~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~--~~~~~l-tv~e~~~--~~~~ 119 (531)
++.+.+||||||||||+|+|+|. + .|.+.+. .+. .+ ....++.+||++|++ .+.+.. ++.+... ....
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~-~~~-~~--~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~~ 97 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRI-ILT-RP--AVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVEPE 97 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEE-EEE-EC--SCCTTCCCCSSCC------CTTTHHHHHHHTTTSCTT
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeE-Eec-CC--chhhhcceEEecCCHHHHHHHHHHHHHHHHHHhccHH
Confidence 46789999999999999999998 4 3433221 111 11 113456799999975 221111 1111000 0112
Q ss_pred HHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 120 FIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 120 ~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
.+++.++. ++ ||||||+|||||+.+|++|+|||||+| ++..+.+.|+++ ++|+||| +|||++
T Consensus 98 ~~~~~l~~-gl--------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 98 VIPKLMEA-GI--------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp HHHHHHHT-TS--------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred HHHHHHHh-CC--------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 34555555 44 999999999999999999999999999 888999999988 6689999 999975
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.79 E-value=1.9e-20 Score=173.90 Aligned_cols=139 Identities=12% Similarity=0.141 Sum_probs=91.6
Q ss_pred eEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHH
Q 042733 32 EIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLY 111 (531)
Q Consensus 32 ~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~ 111 (531)
|++++++. ..+-+.+||||||||||+|++.+-.. .++ ....+ |+++|+... ..+.
T Consensus 1 ~vsl~i~~------gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~-----~d~~~---g~~~~~~~~---~~~~ 55 (171)
T 4gp7_A 1 SMKLTIPE------LSLVVLIGSSGSGKSTFAKKHFKPTE--------VIS-----SDFCR---GLMSDDEND---QTVT 55 (171)
T ss_dssp CEEEEEES------SEEEEEECCTTSCHHHHHHHHSCGGG--------EEE-----HHHHH---HHHCSSTTC---GGGH
T ss_pred CccccCCC------CEEEEEECCCCCCHHHHHHHHccCCe--------EEc-----cHHHH---HHhcCcccc---hhhH
Confidence 45666642 25789999999999999999764221 111 11121 566665421 1111
Q ss_pred hH-HHHHHHHHHHHHHhcCCchhhh----ccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH----------------H
Q 042733 112 DF-THCLYMFIEEGMELVELNPFRQ----ALFEQRKRLTVAVEFVANPSIISRDEPISGLDAR----------------A 170 (531)
Q Consensus 112 e~-~~~~~~~~~~~l~~l~l~~~~~----~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~----------------~ 170 (531)
.. ........... ...+.....+ ...|||||++||++++.+|++++|||||+|||+. .
T Consensus 56 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~ 134 (171)
T 4gp7_A 56 GAAFDVLHYIVSKR-LQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKH 134 (171)
T ss_dssp HHHHHHHHHHHHHH-HHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHH
Confidence 11 01111111222 2223322222 2338999999999999999999999999999999 6
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 171 ATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 171 ~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
+..+.+.+++++++|.|+|++||+++
T Consensus 135 ~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 135 TQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp HHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred HHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 68899999988877999999999975
No 69
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.78 E-value=6.3e-19 Score=180.11 Aligned_cols=82 Identities=16% Similarity=0.111 Sum_probs=68.2
Q ss_pred cHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeE--EEEc
Q 042733 137 LFEQRKRLTVAVEFV----ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDEL--FLLK 210 (531)
Q Consensus 137 ~~GerqRv~iA~aL~----~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v--~lL~ 210 (531)
+.|||||++||++|+ .+|++++|||||++||+..+..+.+.|++++ +|.+||++||++. +.+.||++ +++.
T Consensus 221 S~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v~~~ 297 (322)
T 1e69_A 221 SGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGVTMV 297 (322)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEEEES
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEEEEe
Confidence 349999999999997 5889999999999999999999999999984 5889999999964 57789986 7777
Q ss_pred cCceeeecCCC
Q 042733 211 QVGQEISVGPL 221 (531)
Q Consensus 211 ~~G~~v~~G~~ 221 (531)
++...+.....
T Consensus 298 ~g~s~~~~~~~ 308 (322)
T 1e69_A 298 NGVSAIVPVEV 308 (322)
T ss_dssp SSCEEEEECCC
T ss_pred CCEEEEEEEEc
Confidence 64444444443
No 70
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.75 E-value=1.5e-19 Score=169.19 Aligned_cols=141 Identities=13% Similarity=-0.014 Sum_probs=91.1
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhc
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELV 128 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l 128 (531)
-+.+||||||||||+|+|+|...- .+.|... ........++.+||++|+.. +.++ .+..+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i-~~~g~~~---~~~~~~~~~~~ig~~~~~~~------~~~~----------~~~~~ 62 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGK-RAIGFWT---EEVRDPETKKRTGFRIITTE------GKKK----------IFSSK 62 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGG-GEEEEEE---EEEC------CCEEEEEETT------CCEE----------EEEET
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC-cCCCEEh---hhhccccccceeEEEeecCc------HHHH----------HHHhh
Confidence 467899999999999999996531 1223211 11111124567899999751 1111 01111
Q ss_pred CCc--hhhh-----ccHHHHHHHHHHHH-----HhhCCCeEEEeC--CCCCCCHHHHHHHHHHHHHHHHcCCeEEEEec-
Q 042733 129 ELN--PFRQ-----ALFEQRKRLTVAVE-----FVANPSIISRDE--PISGLDARAATTVIRMVRNTVDMGRTVVCTIH- 193 (531)
Q Consensus 129 ~l~--~~~~-----~~~GerqRv~iA~a-----L~~~p~lllLDE--PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H- 193 (531)
+.. +..+ .+.|||||++||++ ++.+|++++||| ||++||+..++.+.+.+++ .+.|+|+++|
T Consensus 63 ~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~ 139 (178)
T 1ye8_A 63 FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPI 139 (178)
T ss_dssp TCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCS
T ss_pred cCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEcc
Confidence 111 1112 23499999999996 999999999999 9999999999999888865 4677899986
Q ss_pred --CCchHHHhccCeEEEEccCceeeec
Q 042733 194 --QPSIDIFYSFDELFLLKQVGQEISV 218 (531)
Q Consensus 194 --~~~~~i~~~~d~v~lL~~~G~~v~~ 218 (531)
+.. .+...+|+ . +|+++..
T Consensus 140 ~h~~~-~~~~i~~r----~-~~~i~~~ 160 (178)
T 1ye8_A 140 RDVHP-LVKEIRRL----P-GAVLIEL 160 (178)
T ss_dssp SCCSH-HHHHHHTC----T-TCEEEEC
T ss_pred CCCch-HHHHHHhc----C-CcEEEEe
Confidence 433 45556776 3 3666553
No 71
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.73 E-value=5.5e-21 Score=182.80 Aligned_cols=155 Identities=12% Similarity=0.068 Sum_probs=104.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhH-------------
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDF------------- 113 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~------------- 113 (531)
.+.+.+||||||||||+|+|+|..+. +.+.+.+.+.+... ..++.++|++|++..++.+|+.++
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~~--i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~ 97 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIPN--LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHR 97 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTT--CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCc--eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhh
Confidence 57899999999999999999997642 22333333332211 234568999998766665555432
Q ss_pred ----HHHHHHHHHHH------HHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCC----CHHHHHHHHHHHH
Q 042733 114 ----THCLYMFIEEG------MELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGL----DARAATTVIRMVR 179 (531)
Q Consensus 114 ----~~~~~~~~~~~------l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgL----D~~~~~~i~~~L~ 179 (531)
....++++++. ++.+|+.+.++...++. + +|+.+|++++|||||+|+ |+..++++.+.++
T Consensus 98 ~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~l---S---~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~ 171 (207)
T 1znw_A 98 SGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAV---T---VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARI 171 (207)
T ss_dssp EEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSE---E---EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcE---E---EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 11222333333 23333322222221110 1 788999999999999998 7889999999999
Q ss_pred HHHH-cCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 180 NTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 180 ~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
++++ .|.|+|++|||++ ++...||+++++.+
T Consensus 172 ~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 172 ELAAQGDFDKVVVNRRLE-SACAELVSLLVGTA 203 (207)
T ss_dssp HHHGGGGSSEEEECSSHH-HHHHHHHHHHC---
T ss_pred HHhhhccCcEEEECCCHH-HHHHHHHHHHHhcc
Confidence 9975 5899999999987 67889999998854
No 72
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.73 E-value=3.4e-20 Score=194.79 Aligned_cols=151 Identities=11% Similarity=0.099 Sum_probs=111.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHH--HHHHHHHHHH
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTH--CLYMFIEEGM 125 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~--~~~~~~~~~l 125 (531)
+.+.+||||||||||+|+|+|..++ .+|++.++|.+.. ++ ++++|++ .++.+|+.|+.. .....+++.+
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g~~~t----~~--~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L 141 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGVVEVT----ME--RHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYL 141 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC--------CC--CEEEECS-SCTTEEEEECCCGGGSSCCHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECCeecc----ee--EEecccc-ccCCeeehHhhcccchHHHHHHHH
Confidence 7789999999999999999997543 2356677665432 22 7899975 567788877621 1123467788
Q ss_pred HhcCCchhhhcc---HH--HHHHHHHHHHHhh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-----HcC
Q 042733 126 ELVELNPFRQAL---FE--QRKRLTVAVEFVA----------NPSIISRDEPISGLDARAATTVIRMVRNTV-----DMG 185 (531)
Q Consensus 126 ~~l~l~~~~~~~---~G--erqRv~iA~aL~~----------~p~lllLDEPtsgLD~~~~~~i~~~L~~l~-----~~g 185 (531)
+.+++.+..... .| ||||+.||++|++ +|++++|||||+|||+.++.++++.++++. +.|
T Consensus 142 ~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 142 EKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp HHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888876543222 26 9999999999999 999999999999999999999999999884 323
Q ss_pred ----CeEEEEecCCch-HHHhccCeEE
Q 042733 186 ----RTVVCTIHQPSI-DIFYSFDELF 207 (531)
Q Consensus 186 ----~tvi~~~H~~~~-~i~~~~d~v~ 207 (531)
.+|++++|+.+. ++.+++|++.
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 568889998762 2556666663
No 73
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.68 E-value=5.9e-16 Score=159.18 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=63.8
Q ss_pred HHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 139 EQRK------RLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 139 Gerq------Rv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
|||| |+++|++|+.+|++|+|||||+|||+..+..+.+.|+++.++|.|||++||++ ++.+.||+++.|.
T Consensus 252 G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~~~~l~ 327 (339)
T 3qkt_A 252 GERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHVIRIS 327 (339)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCEEEEEE
Confidence 9999 67778888889999999999999999999999999999887789999999995 4678899999985
No 74
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.67 E-value=1.1e-18 Score=173.80 Aligned_cols=138 Identities=12% Similarity=0.043 Sum_probs=85.5
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHH--------HHHHH
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTH--------CLYMF 120 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~--------~~~~~ 120 (531)
-+.+||||||||||+|+|+|...+ .+|++.++|.+......++.++|++|++.+++.+||.|+.. ...+.
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~~--~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQVS--RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 367999999999999999996542 46889999876544345678999999999999999988610 00011
Q ss_pred HHHHHH-hcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 121 IEEGME-LVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 121 ~~~~l~-~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
+.+.++ .+.-......+.|||||+++||+++. +++||||+.|||+.. .+.++.+.+. .+||+++|..+
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTGG
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEeccc
Confidence 222221 11101112334499999999999876 999999999999987 4556666655 88999988643
No 75
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.64 E-value=9.1e-18 Score=169.90 Aligned_cols=159 Identities=13% Similarity=0.022 Sum_probs=109.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hhh--cceEEEEecCCC-CCCCCcHHhHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ETF--ARILGYCEQNDI-HSPHDTLYDFTHC 116 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~~--~~~igyv~Q~~~-~~~~ltv~e~~~~ 116 (531)
.+-+.+||||||||||+++|+|...+ ..|+|.++|.+... ..+ ++.++|++|++. ..|..|++++...
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~ 178 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 178 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHH
Confidence 57889999999999999999996431 13688888876432 122 346899999988 8888899887432
Q ss_pred HHH--HHHHHHHhcCCchhhhccHHH--HHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEE
Q 042733 117 LYM--FIEEGMELVELNPFRQALFEQ--RKRLTVAVEFVANPS--IISRDEPISGLDARAATTVIRMVRNTVD-MGRTVV 189 (531)
Q Consensus 117 ~~~--~~~~~l~~l~l~~~~~~~~Ge--rqRv~iA~aL~~~p~--lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi 189 (531)
... ....+++.+|+.+..+..++| |||++||++++.+|+ +|+|| ||+|||+..+ ++++.+ .|.|+|
T Consensus 179 ~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~i 251 (302)
T 3b9q_A 179 GKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGL 251 (302)
T ss_dssp HHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEE
T ss_pred HHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEE
Confidence 111 001235566776666655543 899999999999999 99999 9999999865 345554 489999
Q ss_pred EEecCCch--------HHHhccCeEEEEccCcee
Q 042733 190 CTIHQPSI--------DIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 190 ~~~H~~~~--------~i~~~~d~v~lL~~~G~~ 215 (531)
++||.... .+....+.+.++.. |+.
T Consensus 252 iiThlD~~~~~g~~l~~~~~~~~pi~~i~~-Ge~ 284 (302)
T 3b9q_A 252 ILTKLDGSARGGCVVSVVEELGIPVKFIGV-GEA 284 (302)
T ss_dssp EEECCSSCSCTHHHHHHHHHHCCCEEEEEC-SSS
T ss_pred EEeCCCCCCccChheehHHHHCCCEEEEeC-CCC
Confidence 99994220 11223456677764 544
No 76
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.63 E-value=7.7e-17 Score=165.13 Aligned_cols=119 Identities=15% Similarity=0.035 Sum_probs=91.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
+.+.+||+|||||||+|+|+|..++ .+|.+.++|.+... ...++.++++++
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~g-------------------------- 224 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFFG-------------------------- 224 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEECB--------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEeC--------------------------
Confidence 4577788899999999999997653 25788998865211 123455666642
Q ss_pred hcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeE
Q 042733 127 LVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDEL 206 (531)
Q Consensus 127 ~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v 206 (531)
.||+||++||++|..+|++|+|||||+ .++.+.|+.+...+.|+|+++|+++ ....+||+
T Consensus 225 -----------gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri 284 (330)
T 2pt7_A 225 -----------GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRL 284 (330)
T ss_dssp -----------TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHH
T ss_pred -----------CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhh
Confidence 389999999999999999999999998 2456777777654568999999987 56789999
Q ss_pred EEEccCcee
Q 042733 207 FLLKQVGQE 215 (531)
Q Consensus 207 ~lL~~~G~~ 215 (531)
+.|.+ |+.
T Consensus 285 ~~l~~-g~~ 292 (330)
T 2pt7_A 285 ANMSS-SNS 292 (330)
T ss_dssp HHHHH-TSG
T ss_pred eehhc-CCc
Confidence 99986 653
No 77
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.63 E-value=1.1e-15 Score=138.44 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=65.7
Q ss_pred cHHHHHHHHHH------HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 137 LFEQRKRLTVA------VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 137 ~~GerqRv~iA------~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
+.|||||++|| ++|+.+|++++|||||+|||+.++..+.+.++++.++|+|||++||++ ++...||++++|+
T Consensus 59 SgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~ii~l~ 136 (148)
T 1f2t_B 59 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHVIRIS 136 (148)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEEEEEE
T ss_pred CHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEEEEEE
Confidence 34999999876 899999999999999999999999999999999877799999999997 3567899999994
No 78
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.62 E-value=6e-17 Score=157.99 Aligned_cols=154 Identities=14% Similarity=0.019 Sum_probs=96.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHh--CC-CCCceEEEEEEEcCcccch--hhhcceEEEEecCCCCCCCCcHHhHHHHHHH-
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLA--GR-KPGGYITRNITVSGYPEKQ--ETFARILGYCEQNDIHSPHDTLYDFTHCLYM- 119 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~--G~-~~~g~~~G~i~~~g~~~~~--~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~- 119 (531)
..+.+.+||||||||||+++|+ |. .++ .+.+.+++..... ....+.+|+.+|+....+.+++.+.......
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 106 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGL 106 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC--------
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccccc
Confidence 3678999999999999999999 55 332 2345555543321 1223456787776544444444443111000
Q ss_pred ---HHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC-----HHHHHHHHHHHHHHHHcCCeEEEE
Q 042733 120 ---FIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLD-----ARAATTVIRMVRNTVDMGRTVVCT 191 (531)
Q Consensus 120 ---~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD-----~~~~~~i~~~L~~l~~~g~tvi~~ 191 (531)
.....++.. ..++..+...+..-..+|+++++||||++|| +..++.+.++++.++++|+|||++
T Consensus 107 ~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~v 178 (251)
T 2ehv_A 107 PSEEKFVLEDRF--------NVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILT 178 (251)
T ss_dssp -----------C--------CHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEE
T ss_pred ccccceeccCcc--------cHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 000011111 1233333334444468999999999999998 677777999999998889999999
Q ss_pred ecCCchHH---------Hhcc-CeEEEEcc
Q 042733 192 IHQPSIDI---------FYSF-DELFLLKQ 211 (531)
Q Consensus 192 ~H~~~~~i---------~~~~-d~v~lL~~ 211 (531)
+|+.+. + ...| |++++|+.
T Consensus 179 tH~~~~-~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 179 TEAPDP-QHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp ECCC-----CCSSSSSCGGGGCSEEEEEEE
T ss_pred ECCCCC-CcccccccChhhEeeeEEEEEee
Confidence 999874 3 4677 99999963
No 79
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.61 E-value=1.9e-16 Score=159.41 Aligned_cols=165 Identities=14% Similarity=0.026 Sum_probs=99.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEE-EEEEcCcccchhhhcceEEEEecCCCC--CCCCcHHhH-HHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITR-NITVSGYPEKQETFARILGYCEQNDIH--SPHDTLYDF-THCLYMFIE 122 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G-~i~~~g~~~~~~~~~~~igyv~Q~~~~--~~~ltv~e~-~~~~~~~~~ 122 (531)
++.+.+||+|||||||++.|+|..... .| .+.+.+........++++..+.++..+ ++.++.... .....+.++
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 113 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFD 113 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHH
Confidence 577888888999999999999953210 12 444433333322333333333333211 111222111 111223344
Q ss_pred HHHHhcC--Cchh-hhccHHH-HHHHHHHHHHhhCCCeEEEeCCCC---C---CCH-HHHHHHHHHHHHHHHc-CCeEEE
Q 042733 123 EGMELVE--LNPF-RQALFEQ-RKRLTVAVEFVANPSIISRDEPIS---G---LDA-RAATTVIRMVRNTVDM-GRTVVC 190 (531)
Q Consensus 123 ~~l~~l~--l~~~-~~~~~Ge-rqRv~iA~aL~~~p~lllLDEPts---g---LD~-~~~~~i~~~L~~l~~~-g~tvi~ 190 (531)
++++..+ +.+. .+..++| +||+. |+++..+|+++++||||+ + +|. .....+.+.|++++++ |.|||+
T Consensus 114 ~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~ 192 (296)
T 1cr0_A 114 ELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVV 192 (296)
T ss_dssp HHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 4443322 3322 3455676 77777 999999999999999999 5 565 6778899999999865 999999
Q ss_pred EecCCc-h--------------------HHHhccCeEEEEccCcee
Q 042733 191 TIHQPS-I--------------------DIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 191 ~~H~~~-~--------------------~i~~~~d~v~lL~~~G~~ 215 (531)
++|+.. . .+...||+|++|.+ |+.
T Consensus 193 vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~-~~~ 237 (296)
T 1cr0_A 193 ICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER-NQQ 237 (296)
T ss_dssp EEECC-----------------CCC---CHHHHCSEEEEEEE-C--
T ss_pred EEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEec-Ccc
Confidence 999952 2 46678999999986 653
No 80
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.60 E-value=6.5e-17 Score=166.92 Aligned_cols=139 Identities=14% Similarity=0.039 Sum_probs=102.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hhh--cceEEEEecCCC-CCCCCcHHhHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ETF--ARILGYCEQNDI-HSPHDTLYDFTHC 116 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~~--~~~igyv~Q~~~-~~~~ltv~e~~~~ 116 (531)
.+-+.+||||||||||++.|+|...+ ..|+|.++|.+... ..+ ++.++|++|++. ..|..+++++...
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~ 235 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 235 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHH
Confidence 57889999999999999999996431 13688888876432 112 346899999988 8888888886332
Q ss_pred HHHH-H-HHHHHhcCCchhhhccHHH--HHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEE
Q 042733 117 LYMF-I-EEGMELVELNPFRQALFEQ--RKRLTVAVEFVANPS--IISRDEPISGLDARAATTVIRMVRNTVD-MGRTVV 189 (531)
Q Consensus 117 ~~~~-~-~~~l~~l~l~~~~~~~~Ge--rqRv~iA~aL~~~p~--lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi 189 (531)
.... . ..+++.+|+.+..+..++| |||++||++++.+|+ +|+|| ||+|||+..+. +++.+ .|.|+|
T Consensus 236 ~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~i 308 (359)
T 2og2_A 236 GKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGL 308 (359)
T ss_dssp HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEE
T ss_pred HHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEE
Confidence 1110 0 1234556776655555542 899999999999999 99999 99999988653 44554 489999
Q ss_pred EEecC
Q 042733 190 CTIHQ 194 (531)
Q Consensus 190 ~~~H~ 194 (531)
++||.
T Consensus 309 iiThl 313 (359)
T 2og2_A 309 ILTKL 313 (359)
T ss_dssp EEESC
T ss_pred EEecC
Confidence 99994
No 81
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.57 E-value=3.5e-15 Score=170.16 Aligned_cols=99 Identities=21% Similarity=0.304 Sum_probs=85.2
Q ss_pred HHHHHHhcCCchh-hhccH-----HHHHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEe
Q 042733 121 IEEGMELVELNPF-RQALF-----EQRKRLTVAVEFVANPS--IISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTI 192 (531)
Q Consensus 121 ~~~~l~~l~l~~~-~~~~~-----GerqRv~iA~aL~~~p~--lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~ 192 (531)
..+.+..+|+... .++.+ ||||||+||++|+++|+ +|+|||||+|||+....++++.|++++++|.|||+++
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3456777888654 34433 99999999999999887 9999999999999999999999999988899999999
Q ss_pred cCCchHHHhccCeEEEE------ccCceeeecCCCC
Q 042733 193 HQPSIDIFYSFDELFLL------KQVGQEISVGPLG 222 (531)
Q Consensus 193 H~~~~~i~~~~d~v~lL------~~~G~~v~~G~~~ 222 (531)
||++ ....+|+++.| + +|++++.|+++
T Consensus 524 Hd~~--~~~~aD~ii~lgpgag~~-~G~iv~~G~~~ 556 (916)
T 3pih_A 524 HDEE--VIRNADHIIDIGPGGGTN-GGRVVFQGTVD 556 (916)
T ss_dssp CCHH--HHHTCSEEEEEESSSGGG-CSEEEEEECHH
T ss_pred CCHH--HHHhCCEEEEEcCCcccC-CCEEEEeechh
Confidence 9975 34569999999 6 59999999875
No 82
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.57 E-value=7.8e-15 Score=166.46 Aligned_cols=98 Identities=19% Similarity=0.285 Sum_probs=85.2
Q ss_pred HHHhcCCchh-hhccH-----HHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 124 GMELVELNPF-RQALF-----EQRKRLTVAVEFVANP--SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 124 ~l~~l~l~~~-~~~~~-----GerqRv~iA~aL~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
.++.+||... .++.+ ||||||+||++|..+| ++++|||||+|||+....++++.|+++++.|.|||+++|++
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 566 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 566 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 4788888754 34443 9999999999999985 99999999999999999999999999988899999999997
Q ss_pred chHHHhccCeEEEEc-----cCceeeecCCCCC
Q 042733 196 SIDIFYSFDELFLLK-----QVGQEISVGPLGP 223 (531)
Q Consensus 196 ~~~i~~~~d~v~lL~-----~~G~~v~~G~~~~ 223 (531)
+ ....+|+|++|. ++|++++.|++++
T Consensus 567 ~--~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e 597 (972)
T 2r6f_A 567 D--TMLAADYLIDIGPGAGIHGGEVVAAGTPEE 597 (972)
T ss_dssp H--HHHSCSEEEEECSSSGGGCCSEEEEECTTT
T ss_pred H--HHHhCCEEEEeCCCccCCCCEEEEecCHHH
Confidence 5 346799999993 3599999999875
No 83
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.55 E-value=3.6e-17 Score=173.53 Aligned_cols=179 Identities=15% Similarity=0.142 Sum_probs=124.5
Q ss_pred eEEEEEeEEEEEeCCCccccccE--------EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCc---ccch------
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSL--------SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGY---PEKQ------ 88 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~v--------s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~---~~~~------ 88 (531)
..++++++++.|.. ...+|+++ .+.+||+|||||||+++|+|..++ ..|.+.++|. +...
T Consensus 130 ~~l~~~~v~~~~~t-g~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT-GVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC-SCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC-CceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEeceecHHHHHHHHhhc
Confidence 34678888888852 24466665 344555599999999999997654 3689999997 3321
Q ss_pred --hhhcceEEEEecC-CCCCCCCcHHhHHHHHHHHHHHHHHh-cC-CchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 042733 89 --ETFARILGYCEQN-DIHSPHDTLYDFTHCLYMFIEEGMEL-VE-LNPFRQALFEQRKRLTVAVEFVANPSIISRDEPI 163 (531)
Q Consensus 89 --~~~~~~igyv~Q~-~~~~~~ltv~e~~~~~~~~~~~~l~~-l~-l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPt 163 (531)
...++.++|++|+ +..++.+++.++.....+...+.-+. +. ++...+...|| ||++|| +.+|++ |
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l~~p~~------t 276 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA---IGEPPA------T 276 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH---TTCCCC------S
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH---hCCCcc------c
Confidence 2356789999995 45566778777633222111110000 00 11112222378 999999 899988 9
Q ss_pred CCCCHHHHHHHHHHHHHHHH---c-CC-----eEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 164 SGLDARAATTVIRMVRNTVD---M-GR-----TVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 164 sgLD~~~~~~i~~~L~~l~~---~-g~-----tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|||+.....+.++++++.+ + |. ||++++||++ ...+|++++|.+ |+++..|++
T Consensus 277 ~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~ 339 (438)
T 2dpy_A 277 KGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRL 339 (438)
T ss_dssp SSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCH
Confidence 99999999999999999876 3 64 8999999987 356899999986 999988753
No 84
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.54 E-value=1.2e-15 Score=176.58 Aligned_cols=159 Identities=14% Similarity=0.048 Sum_probs=103.0
Q ss_pred EEEEEe-----EEEEEeCCCccccccEEE----------------EEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 042733 27 YISLNE-----IVYSVDMPQIGDLNSLSG----------------AFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYP 85 (531)
Q Consensus 27 ~l~~~~-----ls~~~~~~~~~iL~~vs~----------------~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~ 85 (531)
.|+++| |++.|. ++..+++|+++ ..||||||||||||+| |....
T Consensus 750 ~l~i~~~rHP~l~~~~~-~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------- 814 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF-GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------- 814 (1022)
T ss_dssp CEEEEEECCCC-------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------
T ss_pred eEEEEeccccEEEEEec-CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------
Confidence 588899 888773 23456666655 5667799999999999 86420
Q ss_pred cchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchh----hhccHHHHHHHHHHHHHhhCCCeEEEeC
Q 042733 86 EKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPF----RQALFEQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 86 ~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~----~~~~~GerqRv~iA~aL~~~p~lllLDE 161 (531)
.++..+||||+.. .+++.+. ++..+|+.+. ..+..++.+++++|++++++|+++||||
T Consensus 815 -----~aqiG~~Vpq~~~---~l~v~d~----------I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDE 876 (1022)
T 2o8b_B 815 -----MAQMGCYVPAEVC---RLTPIDR----------VFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDE 876 (1022)
T ss_dssp -----HHTTTCCEESSEE---EECCCSB----------EEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred -----HhheeEEeccCcC---CCCHHHH----------HHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEEC
Confidence 1222238888642 3343332 1111222211 1234467778999999999999999999
Q ss_pred CCCCCCHHHH-HHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceee--ecCCC
Q 042733 162 PISGLDARAA-TTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI--SVGPL 221 (531)
Q Consensus 162 PtsgLD~~~~-~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v--~~G~~ 221 (531)
|++|+|+... ..+++.|+.++++ |.++|++||+++ .+...+|++.+++ |++. +.|++
T Consensus 877 p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~~--g~~~~~~~~~~ 937 (1022)
T 2o8b_B 877 LGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVRL--GHMACMVENEC 937 (1022)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEEE--EEEEEC-----
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceeec--CeEEEEEecCc
Confidence 9999999985 5578899999876 999999999976 3556789888774 7877 44543
No 85
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.54 E-value=3.6e-15 Score=162.17 Aligned_cols=143 Identities=21% Similarity=0.111 Sum_probs=98.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCC-CceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKP-GGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGM 125 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~-~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l 125 (531)
.+.+.+||+|||||||+++++|... .| + +.+.+++|+.. ..+.+.........++ +
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G----~--------------~vi~~~~ee~~----~~l~~~~~~~g~~~~~-~ 338 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANK----E--------------RAILFAYEESR----AQLLRNAYSWGMDFEE-M 338 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTT----C--------------CEEEEESSSCH----HHHHHHHHTTSCCHHH-H
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCC----C--------------CEEEEEEeCCH----HHHHHHHHHcCCCHHH-H
Confidence 5788899999999999999999532 12 1 11233333321 0111000000000111 1
Q ss_pred HhcCCchhhh-----ccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH-----HHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 126 ELVELNPFRQ-----ALFEQRKRLTVAVEFVANPSIISRDEPISGLDAR-----AATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 126 ~~l~l~~~~~-----~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~-----~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
...|+....+ ...||+||+.+|+++..+|+++++| ||+|||.. .+..+.++++.+++.|.|||+++|+.
T Consensus 339 ~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 339 ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 1233333332 2459999999999999999999999 99999999 99999999999988899999999997
Q ss_pred c---------hHHHhccCeEEEEccCce
Q 042733 196 S---------IDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 196 ~---------~~i~~~~d~v~lL~~~G~ 214 (531)
. ..+...||++++|.+ |+
T Consensus 418 ~~~~~~~~~~~~l~~~~D~vi~L~~-ge 444 (525)
T 1tf7_A 418 QFMGAHSITDSHISTITDTIILLQY-VE 444 (525)
T ss_dssp SSSCCCSSCSSCCTTTCSEEEEEEE-EE
T ss_pred cccCcccccCcccceeeeEEEEEEE-EE
Confidence 1 245678999999986 65
No 86
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.54 E-value=1.9e-14 Score=163.89 Aligned_cols=97 Identities=20% Similarity=0.257 Sum_probs=83.9
Q ss_pred HHHhcCCchh-hhccH-----HHHHHHHHHHHHhhC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 124 GMELVELNPF-RQALF-----EQRKRLTVAVEFVAN--PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 124 ~l~~l~l~~~-~~~~~-----GerqRv~iA~aL~~~--p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
.++.+||... .++.+ ||||||+||++|..+ |++++|||||+|||+.....+++.|+++++.|.|||+++|++
T Consensus 504 ~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 583 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE 583 (993)
T ss_dssp HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH
Confidence 4677888754 34433 999999999999999 589999999999999999999999999998899999999997
Q ss_pred chHHHhccCeEEEEc-----cCceeeecCCCC
Q 042733 196 SIDIFYSFDELFLLK-----QVGQEISVGPLG 222 (531)
Q Consensus 196 ~~~i~~~~d~v~lL~-----~~G~~v~~G~~~ 222 (531)
+ ....+|+|++|. ++|++++.|+++
T Consensus 584 ~--~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~ 613 (993)
T 2ygr_A 584 D--TIEHADWIVDIGPGAGEHGGRIVHSGPYD 613 (993)
T ss_dssp H--HHHTCSEEEEECSSSGGGCCSCCEEECHH
T ss_pred H--HHHhCCEEEEecCccccCCCEEEEeeCHH
Confidence 5 356799999993 359999999874
No 87
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.53 E-value=1.2e-14 Score=164.52 Aligned_cols=98 Identities=18% Similarity=0.225 Sum_probs=85.5
Q ss_pred HHHhcCCchh-hhccH-----HHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 124 GMELVELNPF-RQALF-----EQRKRLTVAVEFVANP--SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 124 ~l~~l~l~~~-~~~~~-----GerqRv~iA~aL~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
.++.+|+... .++.+ ||||||+||++|..+| ++++|||||+|||+...+.++++|+++++.|.|||+++|++
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 4678888754 44443 9999999999999999 59999999999999999999999999988899999999997
Q ss_pred chHHHhccCeEEEEc-----cCceeeecCCCCC
Q 042733 196 SIDIFYSFDELFLLK-----QVGQEISVGPLGP 223 (531)
Q Consensus 196 ~~~i~~~~d~v~lL~-----~~G~~v~~G~~~~ 223 (531)
+ +...+|+|+.|. ++|++++.|++++
T Consensus 442 ~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~ 472 (842)
T 2vf7_A 442 D--VIRRADWLVDVGPEAGEKGGEILYSGPPEG 472 (842)
T ss_dssp H--HHTTCSEEEEECSSSGGGCCSEEEEECGGG
T ss_pred H--HHHhCCEEEEeCCCcccCCCEEEEecCHHH
Confidence 5 456799999993 3599999999864
No 88
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.51 E-value=6.4e-15 Score=168.63 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHH--hhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 139 EQRKRLTVAVEF--VANPSIISRDEPISGLDARAATTV-IRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 139 GerqRv~iA~aL--~~~p~lllLDEPtsgLD~~~~~~i-~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
+++++..+|+++ +++|+++||||||+|||+.....+ +.+++.+++ .|.++|++||+. ++..++|++..+.+ |+
T Consensus 725 f~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~ 801 (934)
T 3thx_A 725 FMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LH 801 (934)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EE
T ss_pred hHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eE
Confidence 455555666666 899999999999999999999888 667788876 499999999995 46788999988886 99
Q ss_pred eeecCCCC
Q 042733 215 EISVGPLG 222 (531)
Q Consensus 215 ~v~~G~~~ 222 (531)
+...++.+
T Consensus 802 v~~~~~~~ 809 (934)
T 3thx_A 802 VTALTTEE 809 (934)
T ss_dssp EEEEEETT
T ss_pred EEEEecCC
Confidence 98877654
No 89
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.50 E-value=4.5e-16 Score=171.93 Aligned_cols=182 Identities=10% Similarity=0.076 Sum_probs=107.9
Q ss_pred EEEEEeEEEEEeCCCcccccc----------------EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc---
Q 042733 27 YISLNEIVYSVDMPQIGDLNS----------------LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK--- 87 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~----------------vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~--- 87 (531)
.++++|+++.|+...+++|+. .-+.+||+||||||||++|+|...+ ..+|.++++|.+..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~ 88 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKK 88 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEec
Confidence 456777777775322222221 2478999999999999999997532 13688888887631
Q ss_pred ---hhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCC--
Q 042733 88 ---QETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEP-- 162 (531)
Q Consensus 88 ---~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEP-- 162 (531)
...+++.+||++|+..+++.+||+++....... +...+. .. .++++.++.+...+|+++++|||
T Consensus 89 ~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~----~~~~~~-~~------s~~~i~l~i~~~~~p~LlLlDePGi 157 (608)
T 3szr_A 89 LVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA----IAGEGM-GI------SHELITLEISSRDVPDLTLIDLPGI 157 (608)
T ss_dssp CSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH----HHCSSS-CC------CSCCEEEEEEESSSCCEEEEECCC-
T ss_pred CCccccceeEEeeecccccCCCHHHHHHHHHHHHHH----hcCCcc-cc------chHHHHHHhcCCCCCceeEeeCCCc
Confidence 124677899999999999999998864322111 111000 00 11223333444568999999999
Q ss_pred ----CCCCCHHHHHHHHHHHHHHHHc--CCeEEEEecCCch------HHHhc-----cCeEEEEccCceeeecCCC
Q 042733 163 ----ISGLDARAATTVIRMVRNTVDM--GRTVVCTIHQPSI------DIFYS-----FDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 163 ----tsgLD~~~~~~i~~~L~~l~~~--g~tvi~~~H~~~~------~i~~~-----~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|||+..+.++.++++++.++ +.++++++|+.+. .+... ...++++.+ +..+..|+.
T Consensus 158 ~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK-~Dlv~~g~~ 232 (608)
T 3szr_A 158 TRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK-PDLVDKGTE 232 (608)
T ss_dssp -----CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC-GGGSSSSST
T ss_pred cccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc-hhhcCcccH
Confidence 9999999999999999997543 6778889998762 12222 245777875 777777764
No 90
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.49 E-value=3.7e-18 Score=172.35 Aligned_cols=155 Identities=14% Similarity=0.147 Sum_probs=98.6
Q ss_pred EEEEEeEEEEEeCCCccccccEE---------EEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc-
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLS---------GAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR- 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs---------~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~- 93 (531)
.|+++||+++|+ +.+|+++| +.+||+|||||||+|+|+|.. . |+|...+.... ....+.
T Consensus 101 ~i~~~~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~----G~I~~~v~q~~~lf~~ti~~~ 172 (305)
T 2v9p_A 101 FFNYQNIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-G----GSVLSFANHKSHFWLASLADT 172 (305)
T ss_dssp HHHHTTCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-T----CEEECGGGTTSGGGGGGGTTC
T ss_pred eEEEEEEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-C----ceEEEEecCccccccccHHHH
Confidence 367788888774 35666555 556666999999999999976 3 45543322110 112332
Q ss_pred eEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHh-c--CCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMEL-V--ELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARA 170 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~-l--~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~ 170 (531)
.+++.++. + . .+.+.++. + +++ ..+.+.||||| ||||+.+|+||| |++||+.+
T Consensus 173 ni~~~~~~-------~-----~----~~~~~i~~~L~~gld-g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~ 228 (305)
T 2v9p_A 173 RAALVDDA-------T-----H----ACWRYFDTYLRNALD-GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQA 228 (305)
T ss_dssp SCEEEEEE-------C-----H----HHHHHHHHTTTGGGG-TCCEECCCSSC---CCCEECCCCEEE----EESSCSTT
T ss_pred hhccCccc-------c-----H----HHHHHHHHHhHccCC-ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHH
Confidence 45554321 1 0 11222332 1 222 22344499999 999999999999 99999999
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCCchhHHHHHHhh
Q 042733 171 ATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKI 235 (531)
Q Consensus 171 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~~~~~~~~f~~~ 235 (531)
+..+.. .+|+++ ....+|++ +|++ |++++.|+. +++..+|.++
T Consensus 229 ~~~i~~--------------ltH~~~--~~~~aD~i-vl~~-G~iv~~g~~----~el~~~y~~l 271 (305)
T 2v9p_A 229 EDRYLY--------------LHSRVQ--TFRFEQPC-TDES-GEQPFNITD----ADWKSFFVRL 271 (305)
T ss_dssp CGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH----HHHHHHHHHS
T ss_pred HHHHHH--------------HhCCHH--HHHhCCEE-EEeC-CEEEEeCCH----HHHHHHHHHH
Confidence 988752 178865 35789999 9986 999999986 3445566654
No 91
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.49 E-value=1.1e-17 Score=161.26 Aligned_cols=143 Identities=13% Similarity=-0.025 Sum_probs=89.1
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcceEEEEecCCCC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFARILGYCEQNDIH 104 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~~igyv~Q~~~~ 104 (531)
+++|+++.++. ..+.+.+||+|||||||+|+|+|..+ |++.+ |.+... ...++.++|++|++..
T Consensus 12 ~l~~isl~i~~------G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (218)
T 1z6g_A 12 SGLVPRGSMNN------IYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTI 79 (218)
T ss_dssp ----------C------CCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHH
T ss_pred cccCCceecCC------CCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHH
Confidence 67888888853 24678899999999999999999764 34555 443211 1134567899998655
Q ss_pred CCCCcH----------HhHH-HHHHHHHHHHHHhcCCchh-hhccHHHHHHHHH-----HHHHhhCCCeEEEeCCCCCCC
Q 042733 105 SPHDTL----------YDFT-HCLYMFIEEGMELVELNPF-RQALFEQRKRLTV-----AVEFVANPSIISRDEPISGLD 167 (531)
Q Consensus 105 ~~~ltv----------~e~~-~~~~~~~~~~l~~l~l~~~-~~~~~GerqRv~i-----A~aL~~~p~lllLDEPtsgLD 167 (531)
++.++. .++. ......++++++...+.-. .+...|||||+++ +++++.+|++++|||||+++|
T Consensus 80 ~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d 159 (218)
T 1z6g_A 80 FEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRN 159 (218)
T ss_dssp HHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTC
T ss_pred HHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcC
Confidence 543321 1110 0001234555554332110 2223499999999 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 042733 168 ARAATTVIRMVRNTVD 183 (531)
Q Consensus 168 ~~~~~~i~~~L~~l~~ 183 (531)
..+...+.+.+++..+
T Consensus 160 ~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 160 TENQEQIQKRMEQLNI 175 (218)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999988887654
No 92
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.47 E-value=8.9e-15 Score=140.68 Aligned_cols=147 Identities=15% Similarity=0.067 Sum_probs=89.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC--CCCCc---eEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAG--RKPGG---YITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMF 120 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G--~~~~g---~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~ 120 (531)
..+.+.+||||||||||+++|+| ..+++ ...+.+.+++..... .+.+++++|+..+.+. ++.+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~-------- 92 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLK-------- 92 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHH--------
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhh--------
Confidence 36889999999999999999999 33211 123466666653211 1123444554433321 2222
Q ss_pred HHHHHHhcCCchhhhccHHHHHHHHHHHHHhh-------CCCeEEEeCCCCCCCHH-------H-----HHHHHHHHHHH
Q 042733 121 IEEGMELVELNPFRQALFEQRKRLTVAVEFVA-------NPSIISRDEPISGLDAR-------A-----ATTVIRMVRNT 181 (531)
Q Consensus 121 ~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~-------~p~lllLDEPtsgLD~~-------~-----~~~i~~~L~~l 181 (531)
.+.+... .....+++++..+.+++. +|+++++||||+++|+. . ..++++.|+++
T Consensus 93 ------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~ 165 (231)
T 4a74_A 93 ------HIYVARA-FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRL 165 (231)
T ss_dssp ------TEEEEEC-CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred ------cEEEEec-CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 1111100 001123444555666655 99999999999999984 2 23678888887
Q ss_pred HH-cCCeEEEEecCCch---HHHhccCeEEEEcc
Q 042733 182 VD-MGRTVVCTIHQPSI---DIFYSFDELFLLKQ 211 (531)
Q Consensus 182 ~~-~g~tvi~~~H~~~~---~i~~~~d~v~lL~~ 211 (531)
++ .|.|||+++|.... .+...+|+++.|.+
T Consensus 166 ~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~ 199 (231)
T 4a74_A 166 ANLYDIAVFVTNQVQANGGHILAHSATLRVYLRK 199 (231)
T ss_dssp HHHHTCEEEEEEECC---------CCSEEEEEEE
T ss_pred HHHCCCeEEEEeecccCcchhhHhhceEEEEEEe
Confidence 75 49999999995431 25668999999985
No 93
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.46 E-value=1.4e-14 Score=143.49 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=85.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
++.+.+||+|||||||+++|+|..++. .+|+|.++|.+.... .+...++++|.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g~~i~~~-~~~~~~~v~q~------------------------- 78 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEYV-FKHKKSIVNQR------------------------- 78 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEESSCCSC-CCCSSSEEEEE-------------------------
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcCCcceee-cCCcceeeeHH-------------------------
Confidence 577899999999999999999964310 147888887664211 12223344442
Q ss_pred hcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeE
Q 042733 127 LVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDEL 206 (531)
Q Consensus 127 ~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v 206 (531)
.++++. ..-|++||++|..+|+++++|||| |+.+...++ +. ++.|.+|++++|+.+ ....+||+
T Consensus 79 ~~gl~~-------~~l~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri 142 (261)
T 2eyu_A 79 EVGEDT-------KSFADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRI 142 (261)
T ss_dssp EBTTTB-------SCHHHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHH
T ss_pred HhCCCH-------HHHHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHH
Confidence 223221 112899999999999999999999 998876544 33 356999999999976 46778888
Q ss_pred EEEc
Q 042733 207 FLLK 210 (531)
Q Consensus 207 ~lL~ 210 (531)
+.|.
T Consensus 143 ~~l~ 146 (261)
T 2eyu_A 143 VDIF 146 (261)
T ss_dssp HHTS
T ss_pred hhhc
Confidence 7775
No 94
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.46 E-value=2e-15 Score=164.21 Aligned_cols=151 Identities=15% Similarity=0.026 Sum_probs=100.1
Q ss_pred cEEEEEcCCCchHHHHHHH--HhCCCCCceEEEEEEEcCcccch--hhhcceEEEEecCCCCCCC---CcHHhHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDV--LAGRKPGGYITRNITVSGYPEKQ--ETFARILGYCEQNDIHSPH---DTLYDFTHCLYM 119 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~--L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~igyv~Q~~~~~~~---ltv~e~~~~~~~ 119 (531)
.+.+.+||||||||||+++ ++|..+++ +|.+.++|.+... ...++.+||++|+....+. .++.+. .
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~--~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~-----~ 112 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFD--EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPD-----P 112 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCC-----S
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcc-----c
Confidence 3455667779999999999 67864422 4789999976422 1234568999987432111 111100 0
Q ss_pred HHHHHHHhcCCchhhhccHHHHHHHHHHHHHh-hCCCeEEEeCCCC-----CCCHHHHHHHHHHHHHHHHcCCeEEEEec
Q 042733 120 FIEEGMELVELNPFRQALFEQRKRLTVAVEFV-ANPSIISRDEPIS-----GLDARAATTVIRMVRNTVDMGRTVVCTIH 193 (531)
Q Consensus 120 ~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~-~~p~lllLDEPts-----gLD~~~~~~i~~~L~~l~~~g~tvi~~~H 193 (531)
...++++.+++ ++ +.-.+..+|. .+|++++|||||+ +||+..++.+.++++.++++|+|||+++|
T Consensus 113 ~~~~~l~~~~l--------~~-~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH 183 (525)
T 1tf7_A 113 EGQEVVGGFDL--------SA-LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTE 183 (525)
T ss_dssp SCCSCCSSHHH--------HH-HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred chhhhhcccCH--------HH-HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 00011111111 22 3444555554 7899999999998 56999999999999999888999999999
Q ss_pred CCchH--------HHhccCeEEEEccCce
Q 042733 194 QPSID--------IFYSFDELFLLKQVGQ 214 (531)
Q Consensus 194 ~~~~~--------i~~~~d~v~lL~~~G~ 214 (531)
+++.. ...+||+|++|++ |+
T Consensus 184 ~~~~~~~~~~~~i~~~laD~vi~L~~-~~ 211 (525)
T 1tf7_A 184 RIEEYGPIARYGVEEFVSDNVVILRN-VL 211 (525)
T ss_dssp CSSSSSCSSTTSCHHHHCSEEEEEEE-EC
T ss_pred CCCCccccccccceeeeeeEEEEEEE-Ec
Confidence 98742 2345999999986 54
No 95
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.45 E-value=2e-15 Score=152.75 Aligned_cols=152 Identities=12% Similarity=-0.028 Sum_probs=75.7
Q ss_pred EeEEEEEeCCCccccccEEE---EEcCCCchHHHHHHHHhCC-CCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCC
Q 042733 31 NEIVYSVDMPQIGDLNSLSG---AFRPGGAGKTTLMDVLAGR-KPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSP 106 (531)
Q Consensus 31 ~~ls~~~~~~~~~iL~~vs~---~i~~gGaGKTTLLk~L~G~-~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~ 106 (531)
+||+++|+ ++.+++++++ .+||+|||||||+++|.|. ..+ .+| +.++|.+.......+.+++++|++....
T Consensus 2 ~~l~~~~~--~~~~l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~--~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~ 76 (301)
T 2qnr_A 2 SNLPNQVH--RKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYP--ERV-ISGAAEKIERTVQIEASTVEIEERGVKL 76 (301)
T ss_dssp ------------------CEEEEEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCE
T ss_pred CCCcceEC--CEEEEcCCCEEEEEECCCCCCHHHHHHHHhCCCccC--CCC-cccCCcccCCcceEeeEEEEecCCCccc
Confidence 36777774 4568888876 6799999999999999996 331 345 6666654322111345789999887777
Q ss_pred CCcHHhHHHHH---------HHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHH
Q 042733 107 HDTLYDFTHCL---------YMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPIS-GLDARAATTVIR 176 (531)
Q Consensus 107 ~ltv~e~~~~~---------~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPts-gLD~~~~~~i~~ 176 (531)
.+|+.++.... ....+.+.+..+ ....+...|||||+.+||+++ ++++||||+ |||+... +
T Consensus 77 ~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~-~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~ 147 (301)
T 2qnr_A 77 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFE-RYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----A 147 (301)
T ss_dssp EEEEEEEC-----------CTTHHHHHHHHHH-HHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----H
T ss_pred CcchhhhhhhhhhcCcHHHHHHHHHHHHHHHH-HHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----H
Confidence 78887762210 011111111100 112233338999998888875 999999998 5999873 5
Q ss_pred HHHHHHHc-CCeEEEEecCCc
Q 042733 177 MVRNTVDM-GRTVVCTIHQPS 196 (531)
Q Consensus 177 ~L~~l~~~-g~tvi~~~H~~~ 196 (531)
.++++.++ +.++|++.||..
T Consensus 148 ~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 148 FMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHhcCCEEEEEEeCCCC
Confidence 56666544 778899999864
No 96
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.42 E-value=9.9e-15 Score=148.23 Aligned_cols=104 Identities=13% Similarity=-0.013 Sum_probs=78.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHH----------H
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTH----------C 116 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~----------~ 116 (531)
.+.+.+||+|||||||+|+|+|..++. +|. +.+++++|++.+++. |+.|+.. .
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~~~--------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~~~~ 153 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLARW--------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHRKGFPESY 153 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTS--------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTSGGGB
T ss_pred EEEEEECCCCchHHHHHHHHHhhcccc--------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHhcCCChHH
Confidence 578999999999999999999964320 111 458999999988887 8887511 1
Q ss_pred HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 042733 117 LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDA 168 (531)
Q Consensus 117 ~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~ 168 (531)
....+.+.++.++ .+..+..+ ||+||+++|++++.+|+|||||||+..+|+
T Consensus 154 d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 154 NRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp CHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred HHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1234566677666 33332322 999999999999999999999999999986
No 97
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.42 E-value=1.2e-14 Score=146.93 Aligned_cols=142 Identities=12% Similarity=0.069 Sum_probs=96.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hhh--cceEEEEecCCCCCCCCcHHhHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ETF--ARILGYCEQNDIHSPHDTLYDFTHCL 117 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~~--~~~igyv~Q~~~~~~~ltv~e~~~~~ 117 (531)
.+-+.+||||||||||+++|+|...+ ..|+|.+.|.+... ..+ ++.++|++|+....|..++.++....
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999995332 13678888876421 112 34589999998888888888763321
Q ss_pred HHH-HH-HHHHhcCCchhhhccH--HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEe
Q 042733 118 YMF-IE-EGMELVELNPFRQALF--EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTI 192 (531)
Q Consensus 118 ~~~-~~-~~l~~l~l~~~~~~~~--GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~ 192 (531)
... .+ .+++..|..+..+... .++||++|||+++.+|+.++| .||+.+...+++.++++.+. |.|+|++|
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivT 255 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVT 255 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 110 01 0223334443333333 468999999999999994444 45555555667777777654 99999999
Q ss_pred cCC
Q 042733 193 HQP 195 (531)
Q Consensus 193 H~~ 195 (531)
|+.
T Consensus 256 h~d 258 (304)
T 1rj9_A 256 KLD 258 (304)
T ss_dssp CTT
T ss_pred CCc
Confidence 974
No 98
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.40 E-value=6.3e-14 Score=160.05 Aligned_cols=65 Identities=11% Similarity=0.113 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHH-cCCeEEEEecCCchHHHhccCe
Q 042733 138 FEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVI-RMVRNTVD-MGRTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 138 ~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~-~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~ 205 (531)
.|++|++.|+++ +.+|+++||||||+|||+.....+. .+++.+++ .|.|+|++||+++ +.+++|+
T Consensus 738 ~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~ 804 (918)
T 3thx_B 738 EELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKN 804 (918)
T ss_dssp HHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHH
T ss_pred HHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhh
Confidence 378899988888 8999999999999999999999987 77778865 5999999999965 4455554
No 99
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.40 E-value=2e-14 Score=148.00 Aligned_cols=174 Identities=14% Similarity=0.149 Sum_probs=115.1
Q ss_pred eEEEEEeEEEEEeCCCccccccE--------EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---------
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSL--------SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--------- 88 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~v--------s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--------- 88 (531)
..++.+++++.|+. ...+|+++ -+.+||||||||||+++|+|..++ ..|.+.+.|.+..+
T Consensus 44 ~~i~~~~l~~~~~t-g~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~--~~g~i~~~G~~~~ev~~~i~~~~ 120 (347)
T 2obl_A 44 DPLLRQVIDQPFIL-GVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASA--DIIVLALIGERGREVNEFLALLP 120 (347)
T ss_dssp CSTTCCCCCSEECC-SCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHTTSC
T ss_pred CCeeecccceecCC-CCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCC--CEEEEEEecccHHHHHHHHHhhh
Confidence 34678888888852 23466554 455556699999999999997654 25788888864211
Q ss_pred -hhhcceEEEEecCCCCCCCCcHHhHHH--HHHHHHHHHHHhcCC------chhhhccHHHHHHHHHHHHHhhCCCeEEE
Q 042733 89 -ETFARILGYCEQNDIHSPHDTLYDFTH--CLYMFIEEGMELVEL------NPFRQALFEQRKRLTVAVEFVANPSIISR 159 (531)
Q Consensus 89 -~~~~~~igyv~Q~~~~~~~ltv~e~~~--~~~~~~~~~l~~l~l------~~~~~~~~GerqRv~iA~aL~~~p~lllL 159 (531)
..+++.+.++.|.+.. ..+... .......+.....+. +...+...|| ||+++| +.+|++
T Consensus 121 ~~~~~~~v~~~~~~~~~-----~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~--- 188 (347)
T 2obl_A 121 QSTLSKCVLVVTTSDRP-----ALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV--- 188 (347)
T ss_dssp HHHHTTEEEEEECTTSC-----HHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC---
T ss_pred hhhhhceEEEEECCCCC-----HHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc---
Confidence 1244568888876431 111100 000011111111110 1122222388 899999 688887
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH--cCC-----eEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 160 DEPISGLDARAATTVIRMVRNTVD--MGR-----TVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 160 DEPtsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|||+....++.++++++.+ +|. ||++++||.+ ...||+++++.+ |+++..|++
T Consensus 189 ---t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~~l 250 (347)
T 2obl_A 189 ---RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTREL 250 (347)
T ss_dssp ---BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCHHH
T ss_pred ---ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeCCH
Confidence 999999999999999999874 477 8999999987 346899999986 999988764
No 100
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.39 E-value=5.8e-14 Score=134.83 Aligned_cols=153 Identities=10% Similarity=0.011 Sum_probs=92.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhc---ceEEEEecCCCCCCCCcHHhHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFA---RILGYCEQNDIHSPHDTLYDFTHCLYMFIEE 123 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~---~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~ 123 (531)
.+.+.+||+|||||||++.|++.... ..|.+.+.+.+....... +.+++.+|+.... .+.+.+..... ..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~- 96 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLIIIDALMKE---KE- 96 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEEEEECCC--------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEEEEeccccc---cC-
Confidence 57788999999999999999984311 013444444332221111 1233333321100 11111100000 00
Q ss_pred HHHhcCCchhhhccHHHHHHHHHHHHHhhCCC--eEEEeCCCCCC--CHHHHHHHHHHHHHHHH-cCCeEEEEecCCc--
Q 042733 124 GMELVELNPFRQALFEQRKRLTVAVEFVANPS--IISRDEPISGL--DARAATTVIRMVRNTVD-MGRTVVCTIHQPS-- 196 (531)
Q Consensus 124 ~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~--lllLDEPtsgL--D~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~-- 196 (531)
..... .....+++++...+.....+|+ ++++||||+++ |+..+.++++.|+++++ .|.|||+++|+..
T Consensus 97 --~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~ 171 (235)
T 2w0m_A 97 --DQWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITT 171 (235)
T ss_dssp --CTTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----
T ss_pred --ceeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 00000 1113477777777777778999 99999999887 99999999999999875 4999999999973
Q ss_pred -----hHHHhccCeEEEEcc
Q 042733 197 -----IDIFYSFDELFLLKQ 211 (531)
Q Consensus 197 -----~~i~~~~d~v~lL~~ 211 (531)
..+.+.||++++|.+
T Consensus 172 ~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 172 SQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp ------CHHHHCSEEEEEEE
T ss_pred ccccccchheeeeEEEEEEE
Confidence 236778999999975
No 101
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.38 E-value=7.3e-14 Score=144.24 Aligned_cols=123 Identities=18% Similarity=0.193 Sum_probs=82.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGM 125 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l 125 (531)
+++-+.+||+||||||||++|+|..++. ..|.+...+.+.. ...+...+++.|........+..+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e-~~~~~~~~~v~q~~~~~~~~~~~~------------- 187 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIE-FVHESKKCLVNQREVHRDTLGFSE------------- 187 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCC-SCCCCSSSEEEEEEBTTTBSCHHH-------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHH-hhhhccccceeeeeeccccCCHHH-------------
Confidence 3678999999999999999999964310 0133333333321 122333456666543322222211
Q ss_pred HhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCe
Q 042733 126 ELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 126 ~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~ 205 (531)
+||++|.++|++|++|||| |..+. +.+.++++.|.+|++++|+.+. ...+||
T Consensus 188 -------------------~La~aL~~~PdvillDEp~---d~e~~----~~~~~~~~~G~~vl~t~H~~~~--~~~~dR 239 (356)
T 3jvv_A 188 -------------------ALRSALREDPDIILVGEMR---DLETI----RLALTAAETGHLVFGTLHTTSA--AKTIDR 239 (356)
T ss_dssp -------------------HHHHHTTSCCSEEEESCCC---SHHHH----HHHHHHHHTTCEEEEEESCSSH--HHHHHH
T ss_pred -------------------HHHHHhhhCcCEEecCCCC---CHHHH----HHHHHHHhcCCEEEEEEccChH--HHHHHH
Confidence 8999999999999999999 65554 4444456679999999999873 377899
Q ss_pred EEEEcc
Q 042733 206 LFLLKQ 211 (531)
Q Consensus 206 v~lL~~ 211 (531)
++.|..
T Consensus 240 li~l~~ 245 (356)
T 3jvv_A 240 VVDVFP 245 (356)
T ss_dssp HHHTSC
T ss_pred HhhhcC
Confidence 988754
No 102
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.37 E-value=8.1e-16 Score=146.66 Aligned_cols=128 Identities=16% Similarity=0.105 Sum_probs=96.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCC--CCCcHHhHHH--------H
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHS--PHDTLYDFTH--------C 116 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~--~~ltv~e~~~--------~ 116 (531)
.+-+.+||+|||||||+|+|+|...+ .++|++|++.++ ..+++.+... .
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAF 65 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCCCChhhh
Confidence 36788999999999999999996431 378888887665 4567765411 1
Q ss_pred HHHHHHHHHHhcCCchhhhc-----cHH----HHHHHHHHHHHhhCCCeEEEeCCCCC-------CCHHHHHHHHHHHHH
Q 042733 117 LYMFIEEGMELVELNPFRQA-----LFE----QRKRLTVAVEFVANPSIISRDEPISG-------LDARAATTVIRMVRN 180 (531)
Q Consensus 117 ~~~~~~~~l~~l~l~~~~~~-----~~G----erqRv~iA~aL~~~p~lllLDEPtsg-------LD~~~~~~i~~~L~~ 180 (531)
....+.+.++.+++.+..+. ..| |+||+++|++++.+|+++++||||++ ||+....++.+.+++
T Consensus 66 ~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r 145 (211)
T 3asz_A 66 DLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKR 145 (211)
T ss_dssp CHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 12345556666665443322 225 46789999999999999999999999 999999999999887
Q ss_pred H-HHcCCeEEEEecCC
Q 042733 181 T-VDMGRTVVCTIHQP 195 (531)
Q Consensus 181 l-~~~g~tvi~~~H~~ 195 (531)
. .++|+|++.++|+.
T Consensus 146 ~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 146 DVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHSCCCHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHH
Confidence 5 45699999999974
No 103
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.35 E-value=8.2e-13 Score=143.30 Aligned_cols=70 Identities=21% Similarity=0.252 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 139 EQRKRLTVAVEFVANP--SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 139 GerqRv~iA~aL~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |.|||++||++. +...||++++|.+
T Consensus 401 G~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~~ 472 (517)
T 4ad8_A 401 GELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVEK 472 (517)
T ss_dssp SHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEec
Confidence 8999999999999999 99999999999999999999999999987 899999999975 4557999999964
No 104
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.32 E-value=4.2e-12 Score=117.78 Aligned_cols=73 Identities=11% Similarity=0.104 Sum_probs=62.7
Q ss_pred hccHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 135 QALFEQRKRLTVAVEFVA----NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 135 ~~~~GerqRv~iA~aL~~----~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
..+.|||||++||++|+. +|++++|||||+|||+.++..+.+.|+++.+ +.++|++||+. .....+|+++.+.
T Consensus 64 ~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~v~ 140 (173)
T 3kta_B 64 AMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIGVS 140 (173)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEEEE
Confidence 345599999999999974 4699999999999999999999999999865 46899999985 4578899998764
No 105
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.32 E-value=3.6e-13 Score=152.39 Aligned_cols=142 Identities=11% Similarity=-0.017 Sum_probs=90.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
++.+.+||||||||||||+|+|....+. .|..... .+..++++.| +++.+++.++...
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl~~~~q-------~G~~vpa--~~~~i~~~~~---i~~~~~~~d~l~~---------- 665 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALIALMAY-------IGSYVPA--QKVEIGPIDR---IFTRVGAADDLAS---------- 665 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHT-------TTCCBSS--SEEEECCCCE---EEEEEC-----------------
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHh-------cCcccch--hcccceeHHH---HHhhCCHHHHHHh----------
Confidence 3556788999999999999999421000 1111111 1234566554 3445555443110
Q ss_pred hcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHH-cCCeEEEEecCCchHHHhccC
Q 042733 127 LVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTV-IRMVRNTVD-MGRTVVCTIHQPSIDIFYSFD 204 (531)
Q Consensus 127 ~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i-~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d 204 (531)
++. +..+++++++.+...+++|++++||||++|+|+.....+ ++.++.+++ .|.++|++||+++ +...+|
T Consensus 666 --~~s----tf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d 737 (800)
T 1wb9_A 666 --GRS----TFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPE 737 (800)
T ss_dssp ----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHH
T ss_pred --hhh----hhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhh
Confidence 111 122455566666777999999999999999999887775 778888887 4999999999975 456777
Q ss_pred eEEEEccCceeeecC
Q 042733 205 ELFLLKQVGQEISVG 219 (531)
Q Consensus 205 ~v~lL~~~G~~v~~G 219 (531)
++..+.+ |++.+..
T Consensus 738 ~~~~v~n-~~~~~~~ 751 (800)
T 1wb9_A 738 KMEGVAN-VHLDALE 751 (800)
T ss_dssp HSTTEEE-EEEEEEE
T ss_pred hhhceEE-EEEEEEE
Confidence 7655654 6666543
No 106
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.30 E-value=2.5e-11 Score=115.64 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhhC-CCeEEEeCCCCCCCHHH--------HHHHHHHHHHHHHc-CCeEEEEecCCch------------
Q 042733 140 QRKRLTVAVEFVAN-PSIISRDEPISGLDARA--------ATTVIRMVRNTVDM-GRTVVCTIHQPSI------------ 197 (531)
Q Consensus 140 erqRv~iA~aL~~~-p~lllLDEPtsgLD~~~--------~~~i~~~L~~l~~~-g~tvi~~~H~~~~------------ 197 (531)
++++++.+++++.+ |+++++||||+++|+.. ..++++.|++++++ |.|||+++|....
T Consensus 91 ~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~ 170 (220)
T 2cvh_A 91 QRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQ 170 (220)
T ss_dssp HHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCH
T ss_pred HHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCc
Confidence 47789999999986 99999999999999743 34566668888764 9999999997541
Q ss_pred HHHhccCeEEEEcc
Q 042733 198 DIFYSFDELFLLKQ 211 (531)
Q Consensus 198 ~i~~~~d~v~lL~~ 211 (531)
.+...+|.+++|.+
T Consensus 171 ~~~~~~d~vi~l~~ 184 (220)
T 2cvh_A 171 TLGYRCKDILRLDK 184 (220)
T ss_dssp HHHHTSSEEEEEEE
T ss_pred ceeecCcEEEEEEE
Confidence 35678999999975
No 107
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.30 E-value=7.1e-13 Score=149.16 Aligned_cols=119 Identities=19% Similarity=0.014 Sum_probs=83.4
Q ss_pred ccccccEE------EEEcCCCchHHHHHHHHhCCC---CCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHh
Q 042733 42 IGDLNSLS------GAFRPGGAGKTTLMDVLAGRK---PGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYD 112 (531)
Q Consensus 42 ~~iL~~vs------~~i~~gGaGKTTLLk~L~G~~---~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e 112 (531)
+.+++|++ +.+||||||||||||+|+|.. ..| .+ .. ..+..+++++| +++.+++.+
T Consensus 566 ~~vl~disl~g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G----~~------vp--a~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMAHELVLITGPNMAGKSTFLRQTALIALLAQVG----SF------VP--AEEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEESSCEEEEESCSSSSHHHHHHHHHHHHHHHTTT----CC------BS--SSEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCCCcEEEEECCCCCChHHHHHHHHhhhhhcccC----ce------ee--hhccceeeHHH---hhccCCHHH
Confidence 34555555 578899999999999999952 222 11 11 11345777776 445566655
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHH--hhCCCeEEEeCC---CCCCCHHHH-HHHHHHHHHHHHcCC
Q 042733 113 FTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEF--VANPSIISRDEP---ISGLDARAA-TTVIRMVRNTVDMGR 186 (531)
Q Consensus 113 ~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL--~~~p~lllLDEP---tsgLD~~~~-~~i~~~L~~l~~~g~ 186 (531)
+.. .++ +.|+++++.+|+++ +++|++++|||| |++||+.+. ..+++.|++ .|.
T Consensus 631 ~l~------------~g~------S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~ 689 (765)
T 1ewq_A 631 DLA------------GGK------STFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRA 689 (765)
T ss_dssp ----------------CC------SHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTC
T ss_pred HHH------------hcc------cHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCC
Confidence 311 122 23789999999999 999999999999 999999875 567777765 589
Q ss_pred eEEEEecCCc
Q 042733 187 TVVCTIHQPS 196 (531)
Q Consensus 187 tvi~~~H~~~ 196 (531)
|+|++||+.+
T Consensus 690 ~vl~~TH~~~ 699 (765)
T 1ewq_A 690 YTLFATHYFE 699 (765)
T ss_dssp EEEEECCCHH
T ss_pred EEEEEeCCHH
Confidence 9999999964
No 108
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.30 E-value=3.1e-12 Score=132.11 Aligned_cols=76 Identities=9% Similarity=0.119 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE
Q 042733 139 EQRKRLTVAVEFV---------ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL 209 (531)
Q Consensus 139 GerqRv~iA~aL~---------~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL 209 (531)
|||||++||++|+ .+|+||+|||||++||+..+..+++.++++. .|+|++||. + + .+|+++.+
T Consensus 269 Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~i~~l 340 (359)
T 2o5v_A 269 GEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAALTLRA 340 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCEEEEE
Confidence 8999999999999 8999999999999999999999999998763 689999994 4 2 78999999
Q ss_pred ccCceeeecCCCCC
Q 042733 210 KQVGQEISVGPLGP 223 (531)
Q Consensus 210 ~~~G~~v~~G~~~~ 223 (531)
++ |+++..|++++
T Consensus 341 ~~-G~i~~~g~~~~ 353 (359)
T 2o5v_A 341 QA-GRFTPVADEEM 353 (359)
T ss_dssp ET-TEEEECCCTTT
T ss_pred EC-CEEEecCCHHH
Confidence 86 99999998753
No 109
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.29 E-value=9.1e-13 Score=135.90 Aligned_cols=154 Identities=14% Similarity=0.060 Sum_probs=94.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCC--C--CceEEEE-EEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRK--P--GGYITRN-ITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMF 120 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~--~--~g~~~G~-i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~ 120 (531)
..+...+||+|||||||++.|++.. + .|...|. +.+++.... .++.+++++|...+.+. ++.
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-~v~--------- 197 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVL--------- 197 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-HHG---------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-HHh---------
Confidence 3578899999999999999999953 2 1111245 777776431 12345677776544321 222
Q ss_pred HHHHHHhcCCchhhhccHHHHHHHHHHHHHh-------hCCCeEEEeCCCCCCCHHH------------HHHHHHHHHHH
Q 042733 121 IEEGMELVELNPFRQALFEQRKRLTVAVEFV-------ANPSIISRDEPISGLDARA------------ATTVIRMVRNT 181 (531)
Q Consensus 121 ~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~-------~~p~lllLDEPtsgLD~~~------------~~~i~~~L~~l 181 (531)
+.+.+... ....+++|++.++++++ .+|+++++||||+++|+.. ..++++.|+++
T Consensus 198 -----~ni~~~~~-~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~l 271 (349)
T 1pzn_A 198 -----KHIYVARA-FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRL 271 (349)
T ss_dssp -----GGEEEEEC-CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred -----hCEEEEec-CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHH
Confidence 22111111 11236889999999999 6899999999999999852 35666777777
Q ss_pred HH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 182 VD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 182 ~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
++ .|.|||+++|... .....+++..... +|+++.++.
T Consensus 272 a~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l~~~~ 309 (349)
T 1pzn_A 272 ANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHILAHSA 309 (349)
T ss_dssp HHHTTCEEEEEEECC-----------------CCCCCTTC
T ss_pred HHHcCcEEEEEccccc-ccccccCCccccC-CcceEeecC
Confidence 76 4899999999865 2323344444555 377766654
No 110
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.29 E-value=2.1e-13 Score=143.51 Aligned_cols=154 Identities=10% Similarity=-0.004 Sum_probs=86.0
Q ss_pred EEEEEeEEEEEeCCCccccccEE---EEEcCCCchHHHHHHHHhCCCC--CceEEEEEEEcCcccchhhhcceEEEEecC
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLS---GAFRPGGAGKTTLMDVLAGRKP--GGYITRNITVSGYPEKQETFARILGYCEQN 101 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs---~~i~~gGaGKTTLLk~L~G~~~--~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~ 101 (531)
.|.++||+++|+ .+.++++++ +.+|++|||||||+|+|+|... .+ .|.+.+++.+ ....+.+++++|+
T Consensus 11 ~l~~~~l~~~y~--~~~vl~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~--~~~~~~~~~~---t~~~~~i~~v~q~ 83 (418)
T 2qag_C 11 YVGFANLPNQVY--RKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPE--YPGPSHRIKK---TVQVEQSKVLIKE 83 (418)
T ss_dssp ----CCCCCCTT--TTTCC-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCC--CCSCC--------CCEEEEEECC---
T ss_pred cEEEEecceeEC--CEEEecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCC--CCCcccCCcc---ceeeeeEEEEEec
Confidence 467888888874 456888885 5679999999999999999643 22 1111111111 1123468899998
Q ss_pred CCCCCCCcHHhHHHHHHH-----HHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCC---eEEEeCCC-CCCCHHHHH
Q 042733 102 DIHSPHDTLYDFTHCLYM-----FIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPS---IISRDEPI-SGLDARAAT 172 (531)
Q Consensus 102 ~~~~~~ltv~e~~~~~~~-----~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~---lllLDEPt-sgLD~~~~~ 172 (531)
+...+.+|+.++...... ....+.+.+. ...+ -+++||++||++++.+|+ +|++|||| .|||+...
T Consensus 84 ~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~--~~~~--~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~- 158 (418)
T 2qag_C 84 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYID--SKFE--DYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI- 158 (418)
T ss_dssp ---CEEEEEEECC-----------CHHHHHHHH--HHHH--HHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-
T ss_pred CCcccceeeeechhhhhhccchhhHHHHHHHHH--HHHH--HHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-
Confidence 888888888877221100 0011111110 0001 156789999999999999 99999999 69998874
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCc
Q 042733 173 TVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 173 ~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
+.++.+.+ +.++|+++|..+
T Consensus 159 ---~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 159 ---EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp ---HHHHHHTT-TSEEEEEEESTT
T ss_pred ---HHHHHHhc-cCcEEEEEEccc
Confidence 34445543 677888877644
No 111
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.28 E-value=6.8e-14 Score=131.83 Aligned_cols=145 Identities=14% Similarity=0.078 Sum_probs=88.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGM 125 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l 125 (531)
++.+.+||||||||||+++|+|..+. +| +.++|....+ ..+++.+||++|+.. ...+. +
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~~~~--------------l 61 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLKS---SG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GTRGP--------------L 61 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHH---TT-CCCEEEECCEEETTSSEEEEEEEETT--SCEEE--------------E
T ss_pred CEEEEECCCCChHHHHHHHHHhhccc---CC-EEEcCEecchhHhhhceEEEEEEecc--cceeh--------------h
Confidence 35678999999999999999996431 24 5555543321 235778999999741 11000 0
Q ss_pred HhcCC--c---------h-hhhccHHHHHHH-HHHH---HHhhCCCeEEEeC--CCCCCCHHHHHHHHHHHHHHHHcCCe
Q 042733 126 ELVEL--N---------P-FRQALFEQRKRL-TVAV---EFVANPSIISRDE--PISGLDARAATTVIRMVRNTVDMGRT 187 (531)
Q Consensus 126 ~~l~l--~---------~-~~~~~~GerqRv-~iA~---aL~~~p~lllLDE--PtsgLD~~~~~~i~~~L~~l~~~g~t 187 (531)
..++. . . ..+...|||+++ ++++ |+..+|++++||| |+..+|......+.+++ +...+
T Consensus 62 ~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l----~~~~~ 137 (189)
T 2i3b_A 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL----STPGT 137 (189)
T ss_dssp EECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH----HCSSC
T ss_pred hcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH----hCCCc
Confidence 11111 0 0 011122677776 3344 5789999999999 89999987655554444 44445
Q ss_pred EEE----EecCCchHHHhccCeEEEEccCceeeecC
Q 042733 188 VVC----TIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 188 vi~----~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
+|+ ++|+.+ ....|++..+.+ |+++...
T Consensus 138 ~ilgti~vsh~~~---~~~vd~i~~~~~-~~i~~~~ 169 (189)
T 2i3b_A 138 IILGTIPVPKGKP---LALVEEIRNRKD-VKVFNVT 169 (189)
T ss_dssp CEEEECCCCCSSC---CTTHHHHHTTCC-SEEEECC
T ss_pred EEEEEeecCCCCc---hHHHHHHeecCC-cEEEEeC
Confidence 553 238764 234577766664 7777653
No 112
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.27 E-value=2.2e-12 Score=128.66 Aligned_cols=137 Identities=19% Similarity=0.150 Sum_probs=88.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHH-----HHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHC-----LYMF 120 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~-----~~~~ 120 (531)
..+...+||+|||||||++.|++....| .+ +.|.+.. ....+.|+..++.. ..+.+.... ....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g----~~-~~g~~~~---~~~~v~~~~~e~~~---~~~~~r~~~~g~~~~~~~ 98 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGG----PD-LLEVGEL---PTGPVIYLPAEDPP---TAIHHRLHALGAHLSAEE 98 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTC----CC-TTCCCCC---CCCCEEEEESSSCH---HHHHHHHHHHHTTSCHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcC----CC-cCCCccC---CCccEEEEECCCCH---HHHHHHHHHHHhhcChhh
Confidence 4688999999999999999999843222 22 2233221 12346777665432 111110000 0112
Q ss_pred HHHHHHhcCCchhhhcc-----HHHHHHHHHHHHHhhCCCeEEEeCCCC--CCCHHHH---HHHHHHHHHHHH-cCCeEE
Q 042733 121 IEEGMELVELNPFRQAL-----FEQRKRLTVAVEFVANPSIISRDEPIS--GLDARAA---TTVIRMVRNTVD-MGRTVV 189 (531)
Q Consensus 121 ~~~~l~~l~l~~~~~~~-----~GerqRv~iA~aL~~~p~lllLDEPts--gLD~~~~---~~i~~~L~~l~~-~g~tvi 189 (531)
.++.++.+++.+..+.. .||+|++ ++++.+|+++++||||+ ++|.... .++++.|+++++ .|+|||
T Consensus 99 ~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi 175 (279)
T 1nlf_A 99 RQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIV 175 (279)
T ss_dssp HHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred hhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEE
Confidence 34456666665544332 2776654 68889999999999999 9998544 788889998875 599999
Q ss_pred EEecCCc
Q 042733 190 CTIHQPS 196 (531)
Q Consensus 190 ~~~H~~~ 196 (531)
+++|+..
T Consensus 176 ~i~H~~~ 182 (279)
T 1nlf_A 176 FLHHASK 182 (279)
T ss_dssp EEEEC--
T ss_pred EEecCCC
Confidence 9999864
No 113
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.18 E-value=3.5e-14 Score=133.03 Aligned_cols=161 Identities=15% Similarity=0.117 Sum_probs=95.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHH-HHH--
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMF-IEE-- 123 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~-~~~-- 123 (531)
.+-+.+||+|||||||+|+|++... |.+.++|.+... ....++++|.....+..++.++....... ...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~-----g~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 74 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLD-----NSAYIEGDIINH---MVVGGYRPPWESDELLALTWKNITDLTVNFLLAQN 74 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS-----SEEEEEHHHHHT---TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC-----CeEEEcccchhh---hhccccccCccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 3567899999999999999998432 456777654321 12346666654333344555542211100 000
Q ss_pred --HHHhcCCch----hhhc--cHHHHHHHHHHH------HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 042733 124 --GMELVELNP----FRQA--LFEQRKRLTVAV------EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVV 189 (531)
Q Consensus 124 --~l~~l~l~~----~~~~--~~GerqRv~iA~------aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi 189 (531)
+++.+.... ..+. +.|++||+.++. ++..+|+...+|+ |||+..... ++.++.+.+.+.++|
T Consensus 75 ~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii 150 (189)
T 2bdt_A 75 DVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFY 150 (189)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEE
T ss_pred cEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEE
Confidence 011110000 0111 114455666666 8888888888884 899988888 888888766678999
Q ss_pred EEecC-CchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 190 CTIHQ-PSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 190 ~~~H~-~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
.++|+ ++ ++.+.||+|+ + +|+++..|++++
T Consensus 151 ~tsh~~~~-~~e~~~~~i~--~-~g~~~~~~~~~~ 181 (189)
T 2bdt_A 151 NTSHLQPT-NLNDIVKNLK--T-NPRFIFCMAGDP 181 (189)
T ss_dssp ECSSSCGG-GHHHHHHHHH--H-CGGGSCC-----
T ss_pred eCCCCChh-hHHHHHHHHh--h-CCcEEEeecCCc
Confidence 99998 76 5778899998 6 499999998754
No 114
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.17 E-value=5.3e-13 Score=130.57 Aligned_cols=133 Identities=11% Similarity=0.056 Sum_probs=81.8
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHD 108 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~l 108 (531)
.++|++++.+. ..+-+..||+|||||||+|+|+|... .+.++ ..++.++|++|++ +++.+
T Consensus 14 ~l~~isl~i~~------g~iigI~G~~GsGKSTl~k~L~~~lG------~~~~~-------~~~~~i~~v~~d~-~~~~l 73 (245)
T 2jeo_A 14 GTENLYFQSMR------PFLIGVSGGTASGKSTVCEKIMELLG------QNEVE-------QRQRKVVILSQDR-FYKVL 73 (245)
T ss_dssp ---------CC------SEEEEEECSTTSSHHHHHHHHHHHHT------GGGSC-------GGGCSEEEEEGGG-GBCCC
T ss_pred eecceeccCCC------CEEEEEECCCCCCHHHHHHHHHHHhc------hhccc-------ccCCceEEEeCCc-Ccccc
Confidence 46777777642 13577888889999999999999541 11121 2456789999985 66778
Q ss_pred cHHhHHHHH-------------HHHHHHHHHhcCCchhhh-----ccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 042733 109 TLYDFTHCL-------------YMFIEEGMELVELNPFRQ-----ALFEQRKRLTVAVEFVANPSIISRDEPISGLDARA 170 (531)
Q Consensus 109 tv~e~~~~~-------------~~~~~~~l~~l~l~~~~~-----~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~ 170 (531)
|+.++.... ...+.+.++.+ .+..+ ...||+||+.+ ++++.+|+++++|||....|..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~- 149 (245)
T 2jeo_A 74 TAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE- 149 (245)
T ss_dssp CHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH-
T ss_pred CHhHhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH-
Confidence 887752110 11123333322 12122 22389999988 5788899999999998888853
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecC
Q 042733 171 ATTVIRMVRNTVDMGRTVVCTIHQ 194 (531)
Q Consensus 171 ~~~i~~~L~~l~~~g~tvi~~~H~ 194 (531)
+.++ .+.+|++++|+
T Consensus 150 -------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 150 -------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp -------HHTT--CSEEEEEECCH
T ss_pred -------HHHh--cCeEEEEECCH
Confidence 1222 37899999997
No 115
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.16 E-value=6.4e-11 Score=123.02 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=63.7
Q ss_pred HHHHHHH------HHHHHHhhC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 138 FEQRKRL------TVAVEFVAN-PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 138 ~GerqRv------~iA~aL~~~-p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
.|||||+ ++|+++..+ |++++|||||+|||+..+..+.+.|+++. ++.+||++||++. +...+|+++++.
T Consensus 283 ~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~~~l~ 359 (371)
T 3auy_A 283 GGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEEEEEE
Confidence 3999988 567888999 99999999999999999999999999874 3568999999974 567899999997
Q ss_pred cCce
Q 042733 211 QVGQ 214 (531)
Q Consensus 211 ~~G~ 214 (531)
++|.
T Consensus 360 k~~~ 363 (371)
T 3auy_A 360 KDGN 363 (371)
T ss_dssp ESSS
T ss_pred ecCC
Confidence 5443
No 116
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.15 E-value=2.4e-12 Score=124.10 Aligned_cols=124 Identities=16% Similarity=0.104 Sum_probs=83.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
.+.+.+||||||||||+|+|+|..++....|.+.+.+.+.... .++.++|++|++..++.+++.. +.++
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~----------~f~E 85 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRD----------AFLE 85 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTT----------CEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcC----------HHHH
Confidence 5788999999999999999999754213678888888765432 3456789999754443333210 0011
Q ss_pred hcCCchhhhccHHH-HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 127 LVELNPFRQALFEQ-RKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 127 ~l~l~~~~~~~~Ge-rqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
.+.. .....|. +++ +..++..+++++|| ||+.++.++.+.+. ++.||++++|+++
T Consensus 86 ~~~~---~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 86 HAEV---FGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp EEEE---TTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSHH
T ss_pred HHHH---HhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCHH
Confidence 1110 0011121 222 45566779999999 99999999998876 5889999999875
No 117
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.14 E-value=1.9e-12 Score=122.47 Aligned_cols=49 Identities=16% Similarity=0.060 Sum_probs=42.4
Q ss_pred HHHHH-HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCe
Q 042733 139 EQRKR-LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRT 187 (531)
Q Consensus 139 GerqR-v~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~t 187 (531)
||||| +..+++++.+|+++++|||||++|.....++++.|.++.++|.|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 153 GARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred hhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 79999 89999999999999999999999999999999999988766544
No 118
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.11 E-value=1.3e-11 Score=128.20 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=83.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
++.+.+||+|||||||+++|+|..++. .+|.|...+.+.. ...++.+++++|..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e-~~~~~~~~~v~Q~~------------------------ 190 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIE-YVFKHKKSIVNQRE------------------------ 190 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCC-SCCCCSSSEEEEEE------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHh-hhhccCceEEEeee------------------------
Confidence 567889999999999999999964310 0367766555543 23455678898852
Q ss_pred hcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeE
Q 042733 127 LVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDEL 206 (531)
Q Consensus 127 ~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v 206 (531)
+|++. ... +.+|+++|..+|+++++|||+ |+.+... .++. +..|.+|+.++|+.+ +...+||+
T Consensus 191 -~g~~~--~~~-----~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl 253 (372)
T 2ewv_A 191 -VGEDT--KSF-----ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AETGHLVFGTLHTNT--AIDTIHRI 253 (372)
T ss_dssp -BTTTB--SCS-----HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHH
T ss_pred -cCCCH--HHH-----HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-HhcCCEEEEEECcch--HHHHHHHH
Confidence 11111 000 568999999999999999999 7766443 3443 346899999999865 56677777
Q ss_pred EEE
Q 042733 207 FLL 209 (531)
Q Consensus 207 ~lL 209 (531)
+.|
T Consensus 254 ~~l 256 (372)
T 2ewv_A 254 VDI 256 (372)
T ss_dssp HHT
T ss_pred HHh
Confidence 655
No 119
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.08 E-value=2.1e-10 Score=121.36 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=65.3
Q ss_pred cHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 137 LFEQRKRLTVAVEFV----ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 137 ~~GerqRv~iA~aL~----~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
+.|||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.+++.++|++||++ .....||+++.+..
T Consensus 335 S~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~~~ 411 (430)
T 1w1w_A 335 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGVYR 411 (430)
T ss_dssp CHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEEEE
T ss_pred CcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEEEE
Confidence 339999999999999 58999999999999999999999999999865678999999984 45678999999864
No 120
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.06 E-value=1.8e-10 Score=111.38 Aligned_cols=142 Identities=18% Similarity=0.165 Sum_probs=77.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC--CCCC---ceEEEEEEEcCccc-chh---hhcceEEEEecCCCCCCCCcHHhHHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAG--RKPG---GYITRNITVSGYPE-KQE---TFARILGYCEQNDIHSPHDTLYDFTHC 116 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G--~~~~---g~~~G~i~~~g~~~-~~~---~~~~~igyv~Q~~~~~~~ltv~e~~~~ 116 (531)
..+.+.+||+|||||||++.|++ ..++ +...|.+.+++... ... ...+.+++.+|+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--------------- 88 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD--------------- 88 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH---------------
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH---------------
Confidence 36889999999999999999999 3321 01135667766542 111 112223333221
Q ss_pred HHHHHHHHHHhcCCchhhhccHHH-HHHHHHHHHHh--hCCCeEEEeCCCCCCCHH-------H-----HHHHHHHHHHH
Q 042733 117 LYMFIEEGMELVELNPFRQALFEQ-RKRLTVAVEFV--ANPSIISRDEPISGLDAR-------A-----ATTVIRMVRNT 181 (531)
Q Consensus 117 ~~~~~~~~l~~l~l~~~~~~~~Ge-rqRv~iA~aL~--~~p~lllLDEPtsgLD~~-------~-----~~~i~~~L~~l 181 (531)
.++.+.+.. .....+ .+.+.-+.+++ .+|+++++|||++.+|+. . ..++++.|+++
T Consensus 89 -------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~ 159 (243)
T 1n0w_A 89 -------VLDNVAYAR--AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRL 159 (243)
T ss_dssp -------HHHTEEEEE--CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHH
T ss_pred -------HhhCeEEEe--cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 111110000 000111 12222233333 589999999999999985 3 34566667776
Q ss_pred HHc-CCeEEEEecCCchH------------------HHhccCeEEEEcc
Q 042733 182 VDM-GRTVVCTIHQPSID------------------IFYSFDELFLLKQ 211 (531)
Q Consensus 182 ~~~-g~tvi~~~H~~~~~------------------i~~~~d~v~lL~~ 211 (531)
+++ |.|||+++|..... +...+|.+++|.+
T Consensus 160 ~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~ 208 (243)
T 1n0w_A 160 ADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 208 (243)
T ss_dssp HHHHCCEEEEEC-------------------------CCTTCEEEEEEE
T ss_pred HHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEE
Confidence 654 99999999964321 2226899999975
No 121
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.02 E-value=1.1e-12 Score=133.47 Aligned_cols=138 Identities=12% Similarity=0.032 Sum_probs=90.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCc------eEEEEEEEcCcccch------------------hhhcceEEEE---e
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGG------YITRNITVSGYPEKQ------------------ETFARILGYC---E 99 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g------~~~G~i~~~g~~~~~------------------~~~~~~igyv---~ 99 (531)
.+....|++|||||||+|.|.|..++. ...|++.++|.+... ..+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 367788999999999999999965210 123566666654321 1234456776 5
Q ss_pred cCCCCCCCCcHHhHH-----HHH-H-----HH------HHHHHHhcCCchhhhc----cHHHHHHHHHHHHHhhCCCeEE
Q 042733 100 QNDIHSPHDTLYDFT-----HCL-Y-----MF------IEEGMELVELNPFRQA----LFEQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 100 Q~~~~~~~ltv~e~~-----~~~-~-----~~------~~~~l~~l~l~~~~~~----~~GerqRv~iA~aL~~~p~lll 158 (531)
|+..+.+..++.|+. ... . .. ++.++..+++.+..+. ..|||||+..+++++.+|+++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~dl~- 163 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVA- 163 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTTTC-
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcccC-
Confidence 776666677777651 110 0 00 1112334444444333 349999998888888999987
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
||| .++.+.++++. .+.+|++++|++.
T Consensus 164 -de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 164 -GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp -SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred -CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 998 67888888874 5889999999864
No 122
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.96 E-value=3.6e-10 Score=102.11 Aligned_cols=45 Identities=7% Similarity=0.111 Sum_probs=37.9
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCe-EEEEecCCc
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRT-VVCTIHQPS 196 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~t-vi~~~H~~~ 196 (531)
+.+|++|++|||++ +|...++.+.+++.++.++|++ +|+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 56799999999998 6666688899999998888888 899999654
No 123
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.93 E-value=3.6e-12 Score=124.60 Aligned_cols=130 Identities=14% Similarity=0.176 Sum_probs=79.6
Q ss_pred cEEEEEcCCCchHHHHHHHHh---CCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHH-----
Q 042733 47 SLSGAFRPGGAGKTTLMDVLA---GRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLY----- 118 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~---G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~----- 118 (531)
.+-+.+||+|||||||+|+|+ |... ...|++..+|.+.. ....+.+++++|+..+.+..++.++.....
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~ 104 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRG 104 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 578899999999999999999 9764 23455555543221 112233445566666667667665422100
Q ss_pred ------------HHHHHHHH--hcC------------CchhhhccH----HHHHHHHHHHHH-hhCCCeEEEe----CCC
Q 042733 119 ------------MFIEEGME--LVE------------LNPFRQALF----EQRKRLTVAVEF-VANPSIISRD----EPI 163 (531)
Q Consensus 119 ------------~~~~~~l~--~l~------------l~~~~~~~~----GerqRv~iA~aL-~~~p~lllLD----EPt 163 (531)
..++...+ ..+ +....++.+ | |+ +++ +.+|++++|| |||
T Consensus 105 ~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg---rv---~al~~~~P~~lllD~~~~EP~ 178 (246)
T 2bbw_A 105 QHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG---RV---YNLDFNPPHVHGIDDVTGEPL 178 (246)
T ss_dssp SCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT---EE---EETTTSCCSSTTBCTTTCCBC
T ss_pred CeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC---Cc---cccccCCCccccccccccccc
Confidence 00111110 111 001111110 2 33 455 8999999999 999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcC
Q 042733 164 SGLDARAATTVIRMVRNTVDMG 185 (531)
Q Consensus 164 sgLD~~~~~~i~~~L~~l~~~g 185 (531)
+|||+.+...+.+.++++.+++
T Consensus 179 ~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 179 VQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp BCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHhH
Confidence 9999999999999999887654
No 124
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.92 E-value=3.9e-10 Score=115.52 Aligned_cols=134 Identities=11% Similarity=0.002 Sum_probs=69.7
Q ss_pred EEEEcCCCchHHHHHHHHhC-CCCCceEEEEEEEcCcccch-hhhcceEEEEecCCCCCCCCcHHhH--HHHHHHHHHHH
Q 042733 49 SGAFRPGGAGKTTLMDVLAG-RKPGGYITRNITVSGYPEKQ-ETFARILGYCEQNDIHSPHDTLYDF--THCLYMFIEEG 124 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G-~~~~g~~~G~i~~~g~~~~~-~~~~~~igyv~Q~~~~~~~ltv~e~--~~~~~~~~~~~ 124 (531)
-+..||+|+|||||+++|+| ...+. .|.+.++|.+... ...+..+++++|.+.+.....-... ....+..+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 116 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG--VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEV 116 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT--CCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC--CCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHH
Confidence 57789999999999999999 33321 3566666654321 1124557788876543211110000 00111122222
Q ss_pred HHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCch
Q 042733 125 MELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSI 197 (531)
Q Consensus 125 l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 197 (531)
.+..++.+.. .+ ..+..+|+++++|||++ ||+.++..+.+.+.+.. .+.++|+++|+++.
T Consensus 117 ~~~~~~~~~~----------~l-s~l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 117 AQMEQVDFQD----------SK-DGLAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSP 176 (354)
T ss_dssp TTTTC-----------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCS
T ss_pred HHhccccccc----------cc-cccCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEeCCHHH
Confidence 2222221111 00 11677999999999999 99999999999998753 36789999999763
No 125
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.91 E-value=4.7e-11 Score=123.75 Aligned_cols=158 Identities=9% Similarity=0.021 Sum_probs=90.3
Q ss_pred ccccEEEEEcCCCchHHHHHHHHhCCCCCceEE----EEEEEc----Cccc--chhhhcceEEEEecCCCCCCCCcHHhH
Q 042733 44 DLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYIT----RNITVS----GYPE--KQETFARILGYCEQNDIHSPHDTLYDF 113 (531)
Q Consensus 44 iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~----G~i~~~----g~~~--~~~~~~~~igyv~Q~~~~~~~ltv~e~ 113 (531)
.|....+.+||+|||||||+|+|+|..+. .. |.+.++ |.+. ....+ +.+++++|+...+ ..|+.++
T Consensus 168 ~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~~-~~t~~~n 243 (365)
T 1lw7_A 168 FFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYIDY-AVRHSHK 243 (365)
T ss_dssp GTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHHH-HHHHCSS
T ss_pred hhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHHH-HHhccCC
Confidence 45677899999999999999999997653 23 343332 1111 00111 1233333321100 0011110
Q ss_pred HHHHHHHHHHHHHhcCCchhhhc-----cHHHHHHHHHHHHHh-hCCCeEEEeC---CC------CCCCHHHHHHHHHHH
Q 042733 114 THCLYMFIEEGMELVELNPFRQA-----LFEQRKRLTVAVEFV-ANPSIISRDE---PI------SGLDARAATTVIRMV 178 (531)
Q Consensus 114 ~~~~~~~~~~~l~~l~l~~~~~~-----~~GerqRv~iA~aL~-~~p~lllLDE---Pt------sgLD~~~~~~i~~~L 178 (531)
+...+ .+..+. ..|++||..+++++. .+|++++||| |+ .++|+..+..+.+.|
T Consensus 244 -----------l~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l 311 (365)
T 1lw7_A 244 -----------IAFID-TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLL 311 (365)
T ss_dssp -----------EEEES-SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHH
T ss_pred -----------EEEEe-CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHH
Confidence 11111 111111 125677777887764 5999999999 65 589999999999999
Q ss_pred HHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 179 RNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 179 ~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+++.+ .|.+|++++|. + +..+.+|++.++++ ++..|.++
T Consensus 312 ~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~~---~l~~~~~~ 351 (365)
T 1lw7_A 312 KKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIEK---VLNEEEIS 351 (365)
T ss_dssp HHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHHH---HTSCCCCS
T ss_pred HHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHHH---Hhcccchh
Confidence 98765 48999999974 3 34566777766642 45555544
No 126
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.88 E-value=1.3e-10 Score=108.49 Aligned_cols=122 Identities=10% Similarity=-0.002 Sum_probs=74.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchh-hhcceEEEEecCCCCCCCCcHHhHHHHHHHHHH---
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQE-TFARILGYCEQNDIHSPHDTLYDFTHCLYMFIE--- 122 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~-~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~--- 122 (531)
.+-+.+||+|||||||+|+|+|.... |.+.++|.+.... ..++.++|++|+.. +..++.++.........
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~----g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~~~~ 83 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGV----PKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYAKEG 83 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSS----CEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCC----CeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHhccC
Confidence 46788999999999999999998543 5788887653221 11234567776543 34566554221111000
Q ss_pred ------HHHHhcCCchhh--hc-----cHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 042733 123 ------EGMELVELNPFR--QA-----LFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTV 182 (531)
Q Consensus 123 ------~~l~~l~l~~~~--~~-----~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~ 182 (531)
..++..++.... +. ..|++||+.++|++..+|+++ +|+...+.+.+.++.+.
T Consensus 84 ~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~ 148 (191)
T 1zp6_A 84 YFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLG 148 (191)
T ss_dssp CEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCG
T ss_pred CeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccC
Confidence 000111222222 11 128999999999999999876 68887777777665543
No 127
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.87 E-value=7.2e-09 Score=95.82 Aligned_cols=47 Identities=13% Similarity=0.098 Sum_probs=42.2
Q ss_pred hhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCeEEEEecCCch
Q 042733 151 VANPSIISRDEPIS-GLDARAATTVIRMVRNTVDMGRTVVCTIHQPSI 197 (531)
Q Consensus 151 ~~~p~lllLDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 197 (531)
+.+|++|+||||++ ++|+..+..+.+++....++|+++|++||.+..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 45999999999985 999999999999999888789999999998753
No 128
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.87 E-value=1.8e-09 Score=111.70 Aligned_cols=123 Identities=19% Similarity=0.115 Sum_probs=85.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc-hhhhcceEEEEe-cCCCCCCCCcHHhHHHHHHHHHHHHH
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK-QETFARILGYCE-QNDIHSPHDTLYDFTHCLYMFIEEGM 125 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~-~~~~~~~igyv~-Q~~~~~~~ltv~e~~~~~~~~~~~~l 125 (531)
+.+.+||+|||||||+|+|+|..++ ..|.|.++|.... ....++.++|++ |++..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~--------------------- 233 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE--------------------- 233 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC--------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc---------------------
Confidence 4566777799999999999997654 2578888875321 122567789998 65321
Q ss_pred HhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCe
Q 042733 126 ELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 126 ~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~ 205 (531)
+. ..+..+|..|+.++..+|+.+++||+.. .+..+.++.+.....|++.++|..+ ....+||
T Consensus 234 ---~~------~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~R 295 (361)
T 2gza_A 234 ---EE------NAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS--CELTFER 295 (361)
T ss_dssp --------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHH
T ss_pred ---cc------ccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHH
Confidence 00 0123457778888889999999999986 3455667666554568899999965 5677899
Q ss_pred EEEEcc
Q 042733 206 LFLLKQ 211 (531)
Q Consensus 206 v~lL~~ 211 (531)
+..+..
T Consensus 296 l~~l~~ 301 (361)
T 2gza_A 296 LALMVL 301 (361)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988875
No 129
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.85 E-value=1.8e-09 Score=113.26 Aligned_cols=139 Identities=14% Similarity=0.074 Sum_probs=88.1
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhH--------HH-----
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDF--------TH----- 115 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~--------~~----- 115 (531)
.+.+||||||||||+|+|+|..-.| .. +.... ....++.++|++|++.+++.+|+.++ ..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~l~g----~~-~~~~~--~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~ 117 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTKFEG----EP-ATHTQ--PGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKP 117 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSCC------------CC--SSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHH
T ss_pred EEEECCCCCCHHHHHHHHhCccccC----Cc-CCCCC--ccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhH
Confidence 5778999999999999999974221 11 11111 11224578999999887777787765 00
Q ss_pred ---HHHHHHHHHHHhc-CCch----hhhcc----H--------H-HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 042733 116 ---CLYMFIEEGMELV-ELNP----FRQAL----F--------E-QRKRLTVAVEFVANPSIISRDEPISGLDARAATTV 174 (531)
Q Consensus 116 ---~~~~~~~~~l~~l-~l~~----~~~~~----~--------G-erqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i 174 (531)
......++.++.. ++.. ..+.. + | ...=+.|+++|..+++++++|||+..|.+.....+
T Consensus 118 i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l 197 (427)
T 2qag_B 118 IVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKF 197 (427)
T ss_dssp HHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhhCCCEEEEEcchhccchHHHHHH
Confidence 1122333444433 3321 11111 1 1 11227899999999999999999999999999999
Q ss_pred HHHHHH-HHHcCCeEEEEecC
Q 042733 175 IRMVRN-TVDMGRTVVCTIHQ 194 (531)
Q Consensus 175 ~~~L~~-l~~~g~tvi~~~H~ 194 (531)
.+.+++ +...|.+|+.++.+
T Consensus 198 ~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 198 KIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHHHcCCcEEecCCC
Confidence 999886 77779998887754
No 130
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.84 E-value=3.6e-10 Score=115.27 Aligned_cols=137 Identities=14% Similarity=0.079 Sum_probs=88.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hhhcc--eEEEEecCCCCCCCCcHHhHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ETFAR--ILGYCEQNDIHSPHDTLYDFTHCL 117 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~~~~--~igyv~Q~~~~~~~ltv~e~~~~~ 117 (531)
.+-+.+||||||||||+++|+|...+ ..|+|.+.|.+... ..+++ .+.+++|+....|..+++++....
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 57899999999999999999995321 13577777765421 11222 355999998888888888863321
Q ss_pred HHH-HHH-HHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecC
Q 042733 118 YMF-IEE-GMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQ 194 (531)
Q Consensus 118 ~~~-~~~-~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~ 194 (531)
... .+. +++..|..+..+....|- -.+++++..++++++||.+|. ..+++.++.+.+ .+.|+|++||.
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL--~~i~ral~~de~llvLDa~t~-------~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEM--KKIARVTKPNLVIFVGDALAG-------NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHH--HHHHHHHCCSEEEEEEEGGGT-------THHHHHHHHHHHHSCCCEEEEECG
T ss_pred HhccchhhHHhhccchhHHHHHHHHH--HHHHHHhcCCCCEEEEecHHH-------HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 110 000 123334433333333333 348899988888888885554 355566666664 48999999995
No 131
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.83 E-value=1.5e-09 Score=111.71 Aligned_cols=102 Identities=17% Similarity=0.110 Sum_probs=69.3
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCC-CceEEEEEEEc-CcccchhhhcceEEEEecCCCCCCCCcHHhH------HHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKP-GGYITRNITVS-GYPEKQETFARILGYCEQNDIHSPHDTLYDF------THCL 117 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~-~g~~~G~i~~~-g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~------~~~~ 117 (531)
..+.+.+||+|||||||+|+|+|... . ..|+|..+ |.... ...++.+++++|+..+++..++++. ....
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~--~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~~l~~l~~~e~ 291 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEI--LTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQI 291 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCC--CCC--------------CCCEEEECTTSCEEEECHHHHTCCCCCCCHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHhcccccc--ccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHhhhcCCCHHHH
Confidence 35889999999999999999999654 2 34677665 54332 2345678999999888888888775 2333
Q ss_pred HHHHHHHHHhcCCchhhhccH----HHHHHHHHHHHH
Q 042733 118 YMFIEEGMELVELNPFRQALF----EQRKRLTVAVEF 150 (531)
Q Consensus 118 ~~~~~~~l~~l~l~~~~~~~~----GerqRv~iA~aL 150 (531)
...+.+.++.+++.+..+... ||+||++||+++
T Consensus 292 ~~~~~e~l~~~gl~~f~~~~~~~lSG~~~r~ala~gl 328 (358)
T 2rcn_A 292 TQGFVEFHDYLGHCKYRDCKHDADPGCAIREAVENGA 328 (358)
T ss_dssp HHTSGGGGGGTTCSSSTTCCSSSCTTCHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCchhcCCCcccCCHHHHHHHHHhcC
Confidence 455677788888876555433 999999999853
No 132
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.74 E-value=3.1e-09 Score=111.64 Aligned_cols=154 Identities=12% Similarity=0.134 Sum_probs=86.5
Q ss_pred EEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCC-------
Q 042733 30 LNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQND------- 102 (531)
Q Consensus 30 ~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~------- 102 (531)
.+++++..+.. ..-+.+|++||||||||++|+|..+ .+.+.+.. .....+|++.+++
T Consensus 147 ~~~i~lelk~g------~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~~~~~l~ 210 (416)
T 1udx_A 147 KRRLRLELMLI------ADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEEERFTLA 210 (416)
T ss_dssp EEEEEEEECCS------CSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSSCEEEEE
T ss_pred EeeeeeEEcCC------CEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCcceEEEE
Confidence 45666665421 3356788889999999999999743 12222211 1122334444332
Q ss_pred ---CCCCCCcHHhH----HH--HHHHHHHHHHHhcCCc--hhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 042733 103 ---IHSPHDTLYDF----TH--CLYMFIEEGMELVELN--PFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAA 171 (531)
Q Consensus 103 ---~~~~~ltv~e~----~~--~~~~~~~~~l~~l~l~--~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~ 171 (531)
.+... ..+. .. ...++++.++..+++. ...+...|++||+.+|++|+.+|.++++ +++|+..+
T Consensus 211 DtpGli~~--a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~ 284 (416)
T 1udx_A 211 DIPGIIEG--ASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE 284 (416)
T ss_dssp ECCCCCCC--GGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred eccccccc--hhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence 22111 0000 00 0011122334444553 2223334899999999999999999999 99999877
Q ss_pred HHHHHHHHHHH-HcCCeEEEEecCCchHHHhccCeE
Q 042733 172 TTVIRMVRNTV-DMGRTVVCTIHQPSIDIFYSFDEL 206 (531)
Q Consensus 172 ~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~d~v 206 (531)
..++.+++.. +.|.+++.+|..-...+.++++.+
T Consensus 285 -~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 285 -EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp -HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 4455554443 457777766543333455555544
No 133
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.70 E-value=1.5e-09 Score=115.60 Aligned_cols=139 Identities=14% Similarity=0.098 Sum_probs=86.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hh--hcceEEEEecCCCCCCCCcHHhHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ET--FARILGYCEQNDIHSPHDTLYDFTHCL 117 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~--~~~~igyv~Q~~~~~~~ltv~e~~~~~ 117 (531)
.+.+.+|+||||||||+++|+|.... ..|+|.++|.+... .. .++.++|++|+....+..+++++....
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 57889999999999999999996431 13678887654321 11 245689999998877778887753221
Q ss_pred HH-HHHH-HHHhcCCchhhhccH-HHHHHHHHHHHHh-hCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEE
Q 042733 118 YM-FIEE-GMELVELNPFRQALF-EQRKRLTVAVEFV-ANPS-IISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCT 191 (531)
Q Consensus 118 ~~-~~~~-~l~~l~l~~~~~~~~-GerqRv~iA~aL~-~~p~-lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~ 191 (531)
.. ..+. +++..|..+...... ..+|++.+++++. ..|+ ++|...+++|.|.. +.++.+.+ -|.|.++.
T Consensus 372 ~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al------~~ak~f~~~~~itgvIl 445 (503)
T 2yhs_A 372 KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV------SQAKLFHEAVGLTGITL 445 (503)
T ss_dssp HHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH------HHHHHHHHHTCCSEEEE
T ss_pred HhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH------HHHHHHHhhcCCCEEEE
Confidence 11 0000 112233322222222 3467888888664 4564 55555588886554 33455554 48899999
Q ss_pred ec
Q 042733 192 IH 193 (531)
Q Consensus 192 ~H 193 (531)
||
T Consensus 446 TK 447 (503)
T 2yhs_A 446 TK 447 (503)
T ss_dssp EC
T ss_pred Ec
Confidence 99
No 134
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.70 E-value=1.1e-07 Score=99.31 Aligned_cols=143 Identities=18% Similarity=0.171 Sum_probs=80.0
Q ss_pred ccEEEEEcCCCchHHHHHHHH--hCCCCC---ceEEEEEEEcCccc-chhh---hcceEEEEecCCCCCCCCcHHhHHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVL--AGRKPG---GYITRNITVSGYPE-KQET---FARILGYCEQNDIHSPHDTLYDFTHC 116 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L--~G~~~~---g~~~G~i~~~g~~~-~~~~---~~~~igyv~Q~~~~~~~ltv~e~~~~ 116 (531)
..+...+||+|||||||++.| .+..+. |...+.+.+++... .... +.+.+|+.+|
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~---------------- 241 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD---------------- 241 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH----------------
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH----------------
Confidence 468899999999999999954 454431 11124556665432 1111 1122232222
Q ss_pred HHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHh--hCCCeEEEeCCCCCCCHHHH------------HHHHHHHHHHH
Q 042733 117 LYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFV--ANPSIISRDEPISGLDARAA------------TTVIRMVRNTV 182 (531)
Q Consensus 117 ~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~--~~p~lllLDEPtsgLD~~~~------------~~i~~~L~~l~ 182 (531)
.+++.+-+.... ....+.+.+.-+..++ .+|+++++|||++.+|+... .++++.|++++
T Consensus 242 ------~vleni~~~~~~-~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~la 314 (400)
T 3lda_A 242 ------DALNNVAYARAY-NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLA 314 (400)
T ss_dssp ------HHHHTEEEEECC-SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred ------hHhhcEEEeccC-ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHH
Confidence 111111110000 0001223333333332 47999999999999997533 56788888888
Q ss_pred Hc-CCeEEEEecCCc------------------hHHHhccCeEEEEcc
Q 042733 183 DM-GRTVVCTIHQPS------------------IDIFYSFDELFLLKQ 211 (531)
Q Consensus 183 ~~-g~tvi~~~H~~~------------------~~i~~~~d~v~lL~~ 211 (531)
++ |.|||+++|... ..+.+.+|.++.|.+
T Consensus 315 ke~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~ 362 (400)
T 3lda_A 315 DQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKK 362 (400)
T ss_dssp HHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEE
T ss_pred HHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEe
Confidence 65 999999999821 123456798888875
No 135
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.57 E-value=3e-10 Score=105.03 Aligned_cols=135 Identities=10% Similarity=0.049 Sum_probs=74.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCC-CceEEEEEEEcCcccc------hhhhc-ceEE----EEecCCCCCCCCcHHhHHH
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKP-GGYITRNITVSGYPEK------QETFA-RILG----YCEQNDIHSPHDTLYDFTH 115 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~-~g~~~G~i~~~g~~~~------~~~~~-~~ig----yv~Q~~~~~~~ltv~e~~~ 115 (531)
+.+.+|++|||||||++.|+|..+ .|...|.|.++|.+.. ...++ +.+| +++|+..++- .+...
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~~~~~ 79 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----RRVSE 79 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----EECCH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----ecCCh
Confidence 457789999999999999999643 2223588999887621 12344 3456 7888765441 11000
Q ss_pred HHHHHHHHHHHh-c-CCchhh--hccHHHHHHHHHHHHHhhCCCeE-------EEeCCCCC---CCHHHHHHHHHHHHHH
Q 042733 116 CLYMFIEEGMEL-V-ELNPFR--QALFEQRKRLTVAVEFVANPSII-------SRDEPISG---LDARAATTVIRMVRNT 181 (531)
Q Consensus 116 ~~~~~~~~~l~~-l-~l~~~~--~~~~GerqRv~iA~aL~~~p~ll-------lLDEPtsg---LD~~~~~~i~~~L~~l 181 (531)
+....+++.++. + +++... ..+.|||||++|||+++.+|++. .=|.|..+ +|......+.+.+.+.
T Consensus 80 ~~~a~l~~~i~~~l~g~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~ 159 (171)
T 2f1r_A 80 EEGNDLDWIYERYLSDYDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSL 159 (171)
T ss_dssp HHHTCHHHHHHHHTTTCSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHH
T ss_pred hhhhCHHHHHHhhCCCCCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHH
Confidence 101123344443 3 222111 12339999999999999999873 22444322 3344556777777665
Q ss_pred HHcCC
Q 042733 182 VDMGR 186 (531)
Q Consensus 182 ~~~g~ 186 (531)
..+|.
T Consensus 160 ~~~~~ 164 (171)
T 2f1r_A 160 LREGG 164 (171)
T ss_dssp HTC--
T ss_pred HhccC
Confidence 55543
No 136
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.45 E-value=6.3e-08 Score=93.41 Aligned_cols=60 Identities=13% Similarity=0.133 Sum_probs=44.6
Q ss_pred hCCCeEEEeCCCCCC--CHHHHHHHHHHHHHHH-HcCCeEEEEecCCchH-------HHhccCeEEEEcc
Q 042733 152 ANPSIISRDEPISGL--DARAATTVIRMVRNTV-DMGRTVVCTIHQPSID-------IFYSFDELFLLKQ 211 (531)
Q Consensus 152 ~~p~lllLDEPtsgL--D~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~-------i~~~~d~v~lL~~ 211 (531)
.+|+++++|+|++.+ |+....+.+..|.+++ +.|.|||+++|..... +.+.+|.++.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6655566666666655 4699999999986531 3567899999964
No 137
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.43 E-value=2e-10 Score=119.74 Aligned_cols=163 Identities=12% Similarity=0.009 Sum_probs=102.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCC----------CceEEEEEEEcCcccch--h--hhcceE---EEEecCCCCCCCCc
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKP----------GGYITRNITVSGYPEKQ--E--TFARIL---GYCEQNDIHSPHDT 109 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~----------~g~~~G~i~~~g~~~~~--~--~~~~~i---gyv~Q~~~~~~~lt 109 (531)
..-+.+|++|||||||+|+|+|... -.+..|.+.++|..... . ..++.+ .++.+.+.+.+..+
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s 100 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGAS 100 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCc
Confidence 3568999999999999999999311 01346888888743211 0 112222 36677777666666
Q ss_pred HHhHH-HHHHHH---HHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHH-H
Q 042733 110 LYDFT-HCLYMF---IEEGMELVELNPFRQALFEQRKRLTVAVEFVANP--SIISRDEPISGLDARAATTVIRMVRNT-V 182 (531)
Q Consensus 110 v~e~~-~~~~~~---~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l-~ 182 (531)
..|.. ...... ++.++..++... +..+-. .+-..+| +++++|||+.++|+...++.++.++.. +
T Consensus 101 ~~e~L~~~fl~~ir~~d~il~Vvd~~~--d~~i~~-------v~~~~dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~ 171 (392)
T 1ni3_A 101 TGVGLGNAFLSHVRAVDAIYQVVRAFD--DAEIIH-------VEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITS 171 (392)
T ss_dssp SSSSSCHHHHHHHTTCSEEEEEEECCC--TTCSSC-------CSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc--cceeee-------eccccCcchhhhhchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 54421 011011 111111111111 000000 0001289 999999999999999999999999988 6
Q ss_pred HcCCeEEEEecCCchHHHhccCeEE-EEccCc-eeeecCCCC
Q 042733 183 DMGRTVVCTIHQPSIDIFYSFDELF-LLKQVG-QEISVGPLG 222 (531)
Q Consensus 183 ~~g~tvi~~~H~~~~~i~~~~d~v~-lL~~~G-~~v~~G~~~ 222 (531)
+.|.|++ +|+.. ++.+.||++. +|.+ | ++++.|+..
T Consensus 172 ~~g~ti~--sh~~~-~~~~l~~~i~~~L~~-G~~~~~~~~~~ 209 (392)
T 1ni3_A 172 RGANTLE--MKAKK-EEQAIIEKVYQYLTE-TKQPIRKGDWS 209 (392)
T ss_dssp CSSCSSS--HHHHH-HHHHHHHHHHHHHHT-TCSCGGGSCCC
T ss_pred hcCCccc--cccHH-HHHHHHHHHHHHhcc-CCceeecCCCC
Confidence 6677864 89865 5778899998 8885 9 899888765
No 138
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.42 E-value=6.5e-07 Score=91.96 Aligned_cols=77 Identities=16% Similarity=0.139 Sum_probs=50.9
Q ss_pred HHHHHHHHhhC--CCeEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HHcCCeEEEEecCCch------
Q 042733 143 RLTVAVEFVAN--PSIISRDEPISGL----------DA---RAATTVIRMVRNT----VDMGRTVVCTIHQPSI------ 197 (531)
Q Consensus 143 Rv~iA~aL~~~--p~lllLDEPtsgL----------D~---~~~~~i~~~L~~l----~~~g~tvi~~~H~~~~------ 197 (531)
-+.++++++.+ |+++++|||++.+ |+ ..++.+.+.++++ ++.|.|||+++|....
T Consensus 127 ~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~ 206 (349)
T 2zr9_A 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFG 206 (349)
T ss_dssp HHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------
T ss_pred HHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 34567777654 9999999999998 33 2333445555554 3459999999996431
Q ss_pred ---------HHHhccCeEEEEccCceeeecCC
Q 042733 198 ---------DIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 198 ---------~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
.+...+|.++.+.+ ++++..|+
T Consensus 207 ~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g~ 237 (349)
T 2zr9_A 207 SPETTTGGKALKFYASVRLDVRR-IETLKDGT 237 (349)
T ss_dssp ---CCSSHHHHHHHCSEEEEEEE-EEEECSSS
T ss_pred CCcccCCchHhhhccceEEEEEE-eeeeecCc
Confidence 14467898888875 66665554
No 139
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.39 E-value=3.7e-08 Score=98.68 Aligned_cols=106 Identities=13% Similarity=0.067 Sum_probs=66.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHH----------
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHC---------- 116 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~---------- 116 (531)
.+-+..|+.|||||||.+.|.+..... |. . ++.+.+|+|++.+++. +.+++...
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~~---------g~-----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~ 95 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLMEK---------YG-----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQG 95 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHH---------HG-----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc---------CC-----C-CceEEEeccccccCCh-HHHHHHhccccccchhhh
Confidence 356888999999999999999965320 10 1 3345566888776653 33332110
Q ss_pred -------HHHHHHHHHHhcCCc-----------hh--hhccHHHHHHHHHH--HHHhhCCCeEEEeCCCCCCCHHH
Q 042733 117 -------LYMFIEEGMELVELN-----------PF--RQALFEQRKRLTVA--VEFVANPSIISRDEPISGLDARA 170 (531)
Q Consensus 117 -------~~~~~~~~l~~l~l~-----------~~--~~~~~GerqRv~iA--~aL~~~p~lllLDEPtsgLD~~~ 170 (531)
......+.++.+... +. ...+.||+||+++| +++ +|+|+|+|||++++|+..
T Consensus 96 ~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 96 RGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 012233444444222 01 12223899999987 555 999999999999999853
No 140
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.34 E-value=5.1e-08 Score=90.95 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 042733 142 KRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRN 180 (531)
Q Consensus 142 qRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~ 180 (531)
+++.+|++++.+|+++++| ||++|.....++++.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4578899999999999999 999999999999998865
No 141
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.29 E-value=9.4e-10 Score=103.96 Aligned_cols=56 Identities=13% Similarity=0.198 Sum_probs=40.9
Q ss_pred HHH-HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 146 VAV-EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 146 iA~-aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
.++ +++.+|++++|||+|+++|..+...+.+.|....+. +...|.+ ..+|++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 677788888888999999999999999988877653 2234521 4589887664
No 142
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.27 E-value=2.5e-09 Score=101.66 Aligned_cols=139 Identities=14% Similarity=0.109 Sum_probs=71.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCC-ceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPG-GYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGM 125 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~-g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l 125 (531)
.+.+.+||+|||||||+|+|+|..++ |...|.+..+|.......... .+....... + .+.+. ......+...-
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~-~~~~~~~~~--~--~~~~~-~~~~~~l~~l~ 96 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEP-RGLLPRKGA--P--ETFDF-EGFQRLCHALK 96 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGG-GTCGGGTTS--G--GGBCH-HHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHH-hcccccCCC--C--chhhH-HHHHHHHHHHh
Confidence 46789999999999999999996431 233577777776543221111 111111000 0 00000 00111111111
Q ss_pred Hh--cC---CchhhhccHHHHHHHHHH-HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHH
Q 042733 126 EL--VE---LNPFRQALFEQRKRLTVA-VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDI 199 (531)
Q Consensus 126 ~~--l~---l~~~~~~~~GerqRv~iA-~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 199 (531)
.. +. .+.-.+...||+||+++| ++++.++.++++|||.- ..+.+.--.++++.+..+..+
T Consensus 97 ~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~--------------~~l~~~~d~~i~vd~~~~~~~ 162 (208)
T 3c8u_A 97 HQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW--------------RDLTAIWDVSIRLEVPMADLE 162 (208)
T ss_dssp HCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------GGGGGTCSEEEEECCCHHHHH
T ss_pred cCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh--------------HHHHHhcCEEEEEeCCHHHHH
Confidence 11 10 011123344899999987 77778887777888731 111222235677777655434
Q ss_pred HhccCe
Q 042733 200 FYSFDE 205 (531)
Q Consensus 200 ~~~~d~ 205 (531)
.+.+.|
T Consensus 163 ~R~~~R 168 (208)
T 3c8u_A 163 ARLVQR 168 (208)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 143
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.26 E-value=2.7e-08 Score=101.90 Aligned_cols=41 Identities=15% Similarity=0.383 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhh------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 042733 139 EQRKRLTVAVEFVA------NPSIISRDEPISGLDARAATTVIRMVRNTVD 183 (531)
Q Consensus 139 GerqRv~iA~aL~~------~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~ 183 (531)
|++|++..|++++. +|++++ +|++|.....++++.|.++.+
T Consensus 214 ~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 214 AAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 68999999998887 688876 999999999999999988654
No 144
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.25 E-value=2.7e-09 Score=115.15 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=34.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQN 101 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~ 101 (531)
.-+.+||+||||||||++|+|..++. .|.+.+.|...-.......+++..|.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~--~giitied~~E~~~~~~~~v~~~~r~ 313 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPD--AKVVSIEDTREIKLYHENWIAEVTRT 313 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTT--CCEEEEESSCCCCCCCSSEEEEECBC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCC--CCEEEEcCcccccCCCCCeEEEEeec
Confidence 45888999999999999999976542 46788887542111112345555543
No 145
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.24 E-value=1.5e-06 Score=87.24 Aligned_cols=107 Identities=17% Similarity=0.025 Sum_probs=68.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
.+-+.+|+||+||||+++.|+|.... ..|++.+.+.+...... +.+ .....+
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~~~------------------~~q--------l~~~~~ 150 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPAA------------------REQ--------LRLLGE 150 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCHHH------------------HHH--------HHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccHhH------------------HHH--------HHHhcc
Confidence 35667799999999999999995321 01455665544321100 000 001122
Q ss_pred hcCCchh---hhccHHHHHHHHHHHHHhhCCCeEEEeCC-CCCCCHHHHHHHHHHHHHH
Q 042733 127 LVELNPF---RQALFEQRKRLTVAVEFVANPSIISRDEP-ISGLDARAATTVIRMVRNT 181 (531)
Q Consensus 127 ~l~l~~~---~~~~~GerqRv~iA~aL~~~p~lllLDEP-tsgLD~~~~~~i~~~L~~l 181 (531)
..++... .+....+.+|.+++.+...+++++++||| ++|+|.....++.+..+.+
T Consensus 151 ~~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 151 KVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHTCCEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 3344322 12233566788999988899999999999 9999998888887776655
No 146
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.22 E-value=1.2e-07 Score=86.29 Aligned_cols=61 Identities=18% Similarity=-0.070 Sum_probs=44.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDF 113 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~ 113 (531)
++.+.+||||||||||+|+|+|..+ .+|+|.++|.+.......+ .+++|+..++ .+|+.|+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l~---~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e~ 94 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGIG---HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPEE 94 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT---CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC---CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHHH
Confidence 3667888889999999999999663 3578888887753211111 2789988777 8898764
No 147
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.19 E-value=1.1e-06 Score=88.13 Aligned_cols=135 Identities=13% Similarity=0.069 Sum_probs=76.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCC--CceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKP--GGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEG 124 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~--~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~ 124 (531)
.+-+.+|+||+||||+++.|++... .| +.+.++.++.. ..+..+. ....
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-------------------~~V~lv~~D~~---r~~a~eq-------L~~~ 156 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKH-------------------KKIAFITTDTY---RIAAVEQ-------LKTY 156 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTC-------------------CCEEEEECCCS---STTHHHH-------HHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcC-------------------CEEEEEecCcc---cchHHHH-------HHHH
Confidence 4778899999999999999999542 22 23556665542 1222221 1112
Q ss_pred HHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH---HcCCeEEE-EecCCchHHH
Q 042733 125 MELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTV---DMGRTVVC-TIHQPSIDIF 200 (531)
Q Consensus 125 l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~---~~g~tvi~-~~H~~~~~i~ 200 (531)
.+..++....... +..-+.+++ .+.+|+++|+| |+|+|+.....+.++.+-+. ..+.++++ ++|... ++.
T Consensus 157 ~~~~gl~~~~~~~-~~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~~~ 230 (296)
T 2px0_A 157 AELLQAPLEVCYT-KEEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-DMK 230 (296)
T ss_dssp HTTTTCCCCBCSS-HHHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-HHH
T ss_pred HHhcCCCeEecCC-HHHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-HHH
Confidence 2333432211111 223345555 45999999999 99999877655555443332 12334444 377643 466
Q ss_pred hccCeEEEEccCceeee
Q 042733 201 YSFDELFLLKQVGQEIS 217 (531)
Q Consensus 201 ~~~d~v~lL~~~G~~v~ 217 (531)
+.++++..+.. +.++.
T Consensus 231 ~~~~~~~~l~~-~giVl 246 (296)
T 2px0_A 231 HIVKRFSSVPV-NQYIF 246 (296)
T ss_dssp HHTTTTSSSCC-CEEEE
T ss_pred HHHHHHhcCCC-CEEEE
Confidence 66665544554 45554
No 148
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.18 E-value=1.1e-06 Score=88.45 Aligned_cols=105 Identities=13% Similarity=0.053 Sum_probs=65.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
.+-+.+|++||||||+++.|++..... .|++.+.+.+.... + . .+......+
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~r~------~-------------a-------~eqL~~~~~ 156 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADTFRA------A-------------A-------IEQLKIWGE 156 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECTTCH------H-------------H-------HHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccccccH------H-------------H-------HHHHHHHHH
Confidence 467889999999999999999953210 13444444322100 0 0 011223344
Q ss_pred hcCCchhhhccHHHHHHH---HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 042733 127 LVELNPFRQALFEQRKRL---TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTV 182 (531)
Q Consensus 127 ~l~l~~~~~~~~GerqRv---~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~ 182 (531)
..++........|+.+++ ++++++..+|+++++|||.. ......+++.|+++.
T Consensus 157 ~~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 157 RVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH 212 (306)
T ss_dssp HHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred HcCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence 555544333334788898 89999999999999999974 344555666665554
No 149
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.17 E-value=1.3e-06 Score=92.81 Aligned_cols=155 Identities=13% Similarity=0.067 Sum_probs=89.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCC--CceEEEEEEEcCcccchhhhc-c----eEEEEecCCCCCCCCcHHhHHHHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKP--GGYITRNITVSGYPEKQETFA-R----ILGYCEQNDIHSPHDTLYDFTHCLY 118 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~--~g~~~G~i~~~g~~~~~~~~~-~----~igyv~Q~~~~~~~ltv~e~~~~~~ 118 (531)
.++....|++|+|||||+..+++... .| ..+.+.+.......+. + ..++..+. .....++..+ .
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g---~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~-l~~g~l~~~~-----~ 273 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTN---ENVAIFSLEMSAQQLVMRMLCAEGNINAQN-LRTGKLTPED-----W 273 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSS---CCEEEEESSSCHHHHHHHHHHHHHTCCHHH-HHTSCCCHHH-----H
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCC---CcEEEEECCCCHHHHHHHHHHHHcCCCHHH-HhcCCCCHHH-----H
Confidence 46778888889999999999988421 12 1344444333222211 1 11222211 0011222222 1
Q ss_pred HHHHHHHHhcCCchh-----hhccHHHHHHHHHHHHHh--hCCCeEEEeCCCCCCCH--------HHHHHHHHHHHHHHH
Q 042733 119 MFIEEGMELVELNPF-----RQALFEQRKRLTVAVEFV--ANPSIISRDEPISGLDA--------RAATTVIRMVRNTVD 183 (531)
Q Consensus 119 ~~~~~~l~~l~l~~~-----~~~~~GerqRv~iA~aL~--~~p~lllLDEPtsgLD~--------~~~~~i~~~L~~l~~ 183 (531)
.++.+.++.++..+. .....+|.+ +.++.++ .+|+++++|+++...++ ....++.+.|+.+++
T Consensus 274 ~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAk 351 (454)
T 2r6a_A 274 GKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALAR 351 (454)
T ss_dssp HHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 223333433322211 122345554 6677776 68999999999987742 344677788888886
Q ss_pred c-CCeEEEEec---------C--Cch-------HHHhccCeEEEEcc
Q 042733 184 M-GRTVVCTIH---------Q--PSI-------DIFYSFDELFLLKQ 211 (531)
Q Consensus 184 ~-g~tvi~~~H---------~--~~~-------~i~~~~d~v~lL~~ 211 (531)
+ |.+||+++| + |.. .+...+|.|++|.+
T Consensus 352 e~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 352 ELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp HHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred HhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 5 999999999 2 321 35667999999986
No 150
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.17 E-value=1.7e-06 Score=80.86 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=32.8
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 042733 143 RLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTV 182 (531)
Q Consensus 143 Rv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~ 182 (531)
....|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 345689999999999999 99999999999998887643
No 151
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.12 E-value=4.7e-07 Score=91.06 Aligned_cols=90 Identities=12% Similarity=0.028 Sum_probs=53.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEE---cCcccchh--hh-cceEEEEecCCC----------------
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITV---SGYPEKQE--TF-ARILGYCEQNDI---------------- 103 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~---~g~~~~~~--~~-~~~igyv~Q~~~---------------- 103 (531)
+.+...+||+|||||||+|+|+|...+ ..|++.+ +|.+.... .. .+.+||++|.+.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~--~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~ 246 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKL--RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKH 246 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCC--C-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGG
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccc--cccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHH
Confidence 568899999999999999999997653 3578887 67654321 11 135799999874
Q ss_pred CCCCCcHHhHH--------HHHHHHHHHHHHhcCCc-hhhhccH
Q 042733 104 HSPHDTLYDFT--------HCLYMFIEEGMELVELN-PFRQALF 138 (531)
Q Consensus 104 ~~~~ltv~e~~--------~~~~~~~~~~l~~l~l~-~~~~~~~ 138 (531)
++|++|+ ++- .+...++.++++.++|. +..+...
T Consensus 247 l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 247 YFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp GSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 4677777 541 11234577788888884 4444433
No 152
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.12 E-value=3.7e-07 Score=91.95 Aligned_cols=100 Identities=10% Similarity=0.044 Sum_probs=63.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEE---cCcccchh--hhc-ceEEEEecCCCCC-----CCCcHHhH-
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITV---SGYPEKQE--TFA-RILGYCEQNDIHS-----PHDTLYDF- 113 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~---~g~~~~~~--~~~-~~igyv~Q~~~~~-----~~ltv~e~- 113 (531)
+.+.+.+||+|||||||+|+|+ .... .+|+|.+ +|.+.... ..+ +.+||++|++.+. +.+|+.+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~--~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~e~l~ 241 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEEL--RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKPREVR 241 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCC--CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCGGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhC--cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCHHHHH
Confidence 4689999999999999999999 7543 3577777 67654321 112 2579999988553 66777332
Q ss_pred ---HH---H------------HHHHHHHHHHhcCCch-hhhccH----H-HHHHHHHHH
Q 042733 114 ---TH---C------------LYMFIEEGMELVELNP-FRQALF----E-QRKRLTVAV 148 (531)
Q Consensus 114 ---~~---~------------~~~~~~~~l~~l~l~~-~~~~~~----G-erqRv~iA~ 148 (531)
.. . ....++++++.++|.+ ..+... | ++|++.|||
T Consensus 242 ~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 242 NYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 10 0 0135788899999976 555544 3 467777776
No 153
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.09 E-value=1.1e-07 Score=100.08 Aligned_cols=108 Identities=14% Similarity=0.029 Sum_probs=67.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hhhcceEEEEe---------cCCCC--CCC-
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ETFARILGYCE---------QNDIH--SPH- 107 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~~~~~igyv~---------Q~~~~--~~~- 107 (531)
++.+.+||+||||||||++|+|..++. .|+|.+.+.+... ...++.+++.+ |++.. ...
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~--~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSS--ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCT--TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 578899999999999999999954321 3566666655421 11223344544 76654 233
Q ss_pred ---CcHHhHHHHH--------------HHHHHHHHHhcCCchhh---hccHHHHHHHHHHHHHhhCCCeEE
Q 042733 108 ---DTLYDFTHCL--------------YMFIEEGMELVELNPFR---QALFEQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 108 ---ltv~e~~~~~--------------~~~~~~~l~~l~l~~~~---~~~~GerqRv~iA~aL~~~p~lll 158 (531)
.|+.++.... .....+.+..+++.+.. ..+.||+|| ||++|+.+|++..
T Consensus 246 Rd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 246 RDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHHHHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred CCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHHHHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 4666642111 01223346677776643 112289999 9999999999875
No 154
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.98 E-value=1.7e-05 Score=84.65 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HcCCeEEEEecCCc
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEP----------ISGLDARAATTVIRMVRNTV----DMGRTVVCTIHQPS 196 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEP----------tsgLD~~~~~~i~~~L~~l~----~~g~tvi~~~H~~~ 196 (531)
++++|..++++....|.+|++||+ +.|.|......+.++|..+- +.+..||.+||+|+
T Consensus 94 ~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 94 AARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred HHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 456778888898899999999999 44777777667777776663 24678999999874
No 155
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.90 E-value=3.2e-06 Score=90.77 Aligned_cols=51 Identities=16% Similarity=0.196 Sum_probs=36.4
Q ss_pred HHHHHhhCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHHHc----CCeEEEEecCCch
Q 042733 146 VAVEFVANPS-IISRDEPISGLDARAATTVIRMVRNTVDM----GRTVVCTIHQPSI 197 (531)
Q Consensus 146 iA~aL~~~p~-lllLDEPtsgLD~~~~~~i~~~L~~l~~~----g~tvi~~~H~~~~ 197 (531)
+|+++...|. ++++||++.-+|.. ...+.+.+.++++. |.++|++||+|+.
T Consensus 289 ~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~ 344 (512)
T 2ius_A 289 QHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSV 344 (512)
T ss_dssp -CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred cccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence 4455667888 78999999988843 34555666655432 7799999999973
No 156
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.88 E-value=2.3e-06 Score=86.18 Aligned_cols=62 Identities=15% Similarity=0.100 Sum_probs=35.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEE---cCcccch-hhhcce-EEEEecCCCCCC----CCcH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITV---SGYPEKQ-ETFARI-LGYCEQNDIHSP----HDTL 110 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~---~g~~~~~-~~~~~~-igyv~Q~~~~~~----~ltv 110 (531)
.+.+.+||+|+|||||+|+|+|.... ..|++.+ .|..... ....+. .||++|.+.+.+ .+|+
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~--~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGL--RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred CEEEEECCCCCCHHHHHHHhcccccc--cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 58899999999999999999997542 3577776 5654321 112222 799999987654 5777
No 157
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.87 E-value=4.9e-07 Score=91.24 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=66.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEE---cCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITV---SGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEE 123 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~---~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~ 123 (531)
.+-+.+||+|||||||+++|+|.......+|++.+ +|...... .++.+|++ |+..+++.+++.++.... ..
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~----~~ 154 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFV----SD 154 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHH----HH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHH----HH
Confidence 47788999999999999999995320001366777 77654322 23456888 777777788887754321 11
Q ss_pred HHHhcC-Cc-hhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 042733 124 GMELVE-LN-PFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDA 168 (531)
Q Consensus 124 ~l~~l~-l~-~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~ 168 (531)
....-. +. +..+. ...+|+..+.+.+.+|+++++|.|....|.
T Consensus 155 l~~~~~~i~~P~~~~--~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 155 LKSGVPNVTAPVYSH--LIYDVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp HTTTCSCEEECCEET--TTTEECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred HhCCCCceecccccc--cccCcccccceecCCCCEEEECchhhCCCc
Confidence 111000 00 11111 112333322344567899999999998874
No 158
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.84 E-value=1.1e-07 Score=94.44 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=59.3
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceEEEEecCC-CCCCCCcHHhHHHHH-HHHHHH
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARILGYCEQND-IHSPHDTLYDFTHCL-YMFIEE 123 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~igyv~Q~~-~~~~~ltv~e~~~~~-~~~~~~ 123 (531)
-+..||+|||||||+|+|+|.... +.+.++|.+... ....+.+++++|.. ...|.+++.+..... ..+-..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~ 122 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR 122 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC
Confidence 577899999999999999997653 467888765421 11223344555542 222333322220000 000000
Q ss_pred HHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCC
Q 042733 124 GMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPIS 164 (531)
Q Consensus 124 ~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPts 164 (531)
..+ ......+... ||+||+.+++++..+|++| ||++.
T Consensus 123 ~~~--~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 123 ETG--ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp ------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred cch--HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 000 0112222222 7899999999999999986 88753
No 159
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.80 E-value=5.5e-07 Score=91.83 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=68.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCC--ceEEEEEEEcCcccch--hh-hcceEEEEecCCCCCCCCcHHhHHHHH----
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPG--GYITRNITVSGYPEKQ--ET-FARILGYCEQNDIHSPHDTLYDFTHCL---- 117 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~--g~~~G~i~~~g~~~~~--~~-~~~~igyv~Q~~~~~~~ltv~e~~~~~---- 117 (531)
+.-+..||+|+|||||+|+|+|.... ...+|.+..++.+... .. .++.+.+++|.+.+.+ ++.|.....
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~ 129 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDF 129 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhc
Confidence 44678999999999999999995421 1233433333322211 11 2456899999877654 555431100
Q ss_pred -----------HHHHHHHHHhcCCch----hhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 042733 118 -----------YMFIEEGMELVELNP----FRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTV 182 (531)
Q Consensus 118 -----------~~~~~~~l~~l~l~~----~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~ 182 (531)
...++..++.+++.. ......|+|||+.++ .+||+.+..++.+.|++.+
T Consensus 130 ~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 130 QIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp CCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHH
T ss_pred ccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHH
Confidence 011111222233321 111223899998654 7899999999999999887
Q ss_pred Hc
Q 042733 183 DM 184 (531)
Q Consensus 183 ~~ 184 (531)
+.
T Consensus 194 ~~ 195 (334)
T 1in4_A 194 SL 195 (334)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 160
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.72 E-value=4.5e-05 Score=86.29 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCeEEEE-ecCCchHHHhccCe
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPIS-GLDARAATTVIRMVRNTVDMGRTVVCT-IHQPSIDIFYSFDE 205 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~-~H~~~~~i~~~~d~ 205 (531)
|+.+|..++..++.+++++++|||.. +||......+++.+.......++|+++ ||++. .+.+.+++
T Consensus 194 G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~ 261 (773)
T 2xau_A 194 GMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFND 261 (773)
T ss_dssp HHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTS
T ss_pred HHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcC
Confidence 89999999999999999999999996 999887777766666554445677775 89765 56666664
No 161
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.67 E-value=0.00023 Score=72.94 Aligned_cols=132 Identities=18% Similarity=0.179 Sum_probs=73.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCC--CCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRK--PGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEG 124 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~--~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~ 124 (531)
.+....||+|+|||||+..+++.. .++. -+.+++.......+.+.+|+.+|+.......++.+
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~---VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~------------ 126 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGV---AAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQ------------ 126 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCC---EEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHH------------
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCe---EEEEecccccchHHHHHcCCchhhhhhhhccCHHH------------
Confidence 578889999999999999999842 2221 13444443222223334455554433222223322
Q ss_pred HHhcCCchhhhccHHHHHHHHHHHHHh--hCCCeEEEeCCCCCCC-H---------------HHHHHHHHHHHHHHHc-C
Q 042733 125 MELVELNPFRQALFEQRKRLTVAVEFV--ANPSIISRDEPISGLD-A---------------RAATTVIRMVRNTVDM-G 185 (531)
Q Consensus 125 l~~l~l~~~~~~~~GerqRv~iA~aL~--~~p~lllLDEPtsgLD-~---------------~~~~~i~~~L~~l~~~-g 185 (531)
-+.+++.++ .+|+++++|+-++=.. . ....++++.|+.++++ +
T Consensus 127 ------------------~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~ 188 (356)
T 3hr8_A 127 ------------------ALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSK 188 (356)
T ss_dssp ------------------HHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSS
T ss_pred ------------------HHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 122233333 4689999998665443 1 1122344555666654 8
Q ss_pred CeEEEEecCCc---------------hHHHhccCeEEEEcc
Q 042733 186 RTVVCTIHQPS---------------IDIFYSFDELFLLKQ 211 (531)
Q Consensus 186 ~tvi~~~H~~~---------------~~i~~~~d~v~lL~~ 211 (531)
.+||++.|-.. ..+...+|.++.+..
T Consensus 189 ~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k 229 (356)
T 3hr8_A 189 AVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRR 229 (356)
T ss_dssp CEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEE
T ss_pred CEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEe
Confidence 89999888621 113356788888864
No 162
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.66 E-value=3.4e-05 Score=81.59 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=50.6
Q ss_pred hCCCeEEEeCCCCCCCH-HHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEE-EccCceeeecCCCCC
Q 042733 152 ANPSIISRDEPISGLDA-RAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFL-LKQVGQEISVGPLGP 223 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~-~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~l-L~~~G~~v~~G~~~~ 223 (531)
.+|++|++||+..-.+. .++..+.+.+..+.+.|+.+|+++|.+..++....+++.- +. .|.++..++++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~~ 265 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPDE 265 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCCH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCCH
Confidence 48999999999877664 6778889999888878899999999865433222233322 33 367777777753
No 163
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.53 E-value=2.6e-06 Score=82.12 Aligned_cols=73 Identities=12% Similarity=-0.001 Sum_probs=41.3
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc-----------hhhhcce
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK-----------QETFARI 94 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~-----------~~~~~~~ 94 (531)
..|+++|++..+.. .-.+=..+.+.+|||||||||||++|+|...+ .+|+|.++|.+.. ....++.
T Consensus 8 ~~l~l~~~~~~~~~-~~~~~~~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (227)
T 1qhl_A 8 RSLTLINWNGFFAR-TFDLDELVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAG 84 (227)
T ss_dssp EEEEEEEETTEEEE-EECHHHHHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSS
T ss_pred eEEEEEeeecccCC-EEEEcCcEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcC
Confidence 45777777654432 11111245677899999999999999995332 1245566554431 1123567
Q ss_pred EEEEecC
Q 042733 95 LGYCEQN 101 (531)
Q Consensus 95 igyv~Q~ 101 (531)
++|++|+
T Consensus 85 i~~v~~~ 91 (227)
T 1qhl_A 85 VCYSMLD 91 (227)
T ss_dssp EEEEEEE
T ss_pred cEEEEEe
Confidence 8999984
No 164
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.53 E-value=1.5e-07 Score=90.57 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=15.4
Q ss_pred cEEEEEcCCCchHHHHHHHHh-CCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLA-GRKP 71 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~-G~~~ 71 (531)
.+-+.+||+|||||||+|+|+ |..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 467889999999999999999 9754
No 165
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.51 E-value=0.00017 Score=73.98 Aligned_cols=56 Identities=13% Similarity=0.183 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEe--cCCc
Q 042733 139 EQRKRLTVAVEFVANPSIISRD-EPISGLDARAATTVIRMVRNTVDMGRTVVCTI--HQPS 196 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLD-EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~--H~~~ 196 (531)
+|+|++. +.+...++-++++| +|..|+|......+++.+++... +..+|++. ||..
T Consensus 235 ~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 235 IEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp HHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred HHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 6666665 55555677788999 99999999998888877776543 67777777 7653
No 166
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.45 E-value=1e-05 Score=75.69 Aligned_cols=53 Identities=23% Similarity=0.176 Sum_probs=34.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceEEEEecCCCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARILGYCEQNDIHS 105 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~igyv~Q~~~~~ 105 (531)
.+-+.+||+|||||||+++|+|..+. +.+.+..... ...++.++|++|++..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALAE------IKISISHTTRPKRPGDQEGVDYFFIDETRF 63 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSSS------EEECCCEECSCCCTTCCBTTTBEECCHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCC------eEEeceeccCCCchhHhcCceEEeccHHHH
Confidence 46789999999999999999997542 2333322111 12244578999875443
No 167
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.43 E-value=0.00015 Score=79.71 Aligned_cols=129 Identities=15% Similarity=0.091 Sum_probs=74.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCC----------------------C
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIH----------------------S 105 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~----------------------~ 105 (531)
.-+.+||+|+|||||+++|++..+.. ..|.+.+.+.+... ....++++++.... +
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~ 138 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRL 138 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHHHHHHHHHTCC-------
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccc
Confidence 45788999999999999999975432 12667777765432 34567888764210 0
Q ss_pred CCCcHHhHH-------------HHHHHHHHHHHHhcCCchh--hhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 042733 106 PHDTLYDFT-------------HCLYMFIEEGMELVELNPF--RQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARA 170 (531)
Q Consensus 106 ~~ltv~e~~-------------~~~~~~~~~~l~~l~l~~~--~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~ 170 (531)
..+++.++. ........+....+..... .....|++|++..++....++.+|+|||... |++..
T Consensus 139 ~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~ 217 (604)
T 3k1j_A 139 KSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKM 217 (604)
T ss_dssp ----CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHH
T ss_pred cccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccccccccCceeeecCCCEEEEechhh-CCHHH
Confidence 000000000 0000000011111111000 1111267888888888889999999999988 89988
Q ss_pred HHHHHHHHHH
Q 042733 171 ATTVIRMVRN 180 (531)
Q Consensus 171 ~~~i~~~L~~ 180 (531)
+..+.+.|.+
T Consensus 218 q~~Ll~~Le~ 227 (604)
T 3k1j_A 218 QQSLLTAMQE 227 (604)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888887764
No 168
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.42 E-value=2.9e-05 Score=72.86 Aligned_cols=127 Identities=9% Similarity=0.041 Sum_probs=68.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHh
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMEL 127 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~ 127 (531)
+-+.+|++||||||+.++|++. | ...+++... .+... + +.. ....++.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l---g----~~~id~d~~----~~~~~----~-----~~~----------~~~~~i~~~ 53 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL---G----VPLVDADVV----AREVV----A-----KDS----------PLLSKIVEH 53 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT---T----CCEEEHHHH----HHHTT----C-----SSC----------HHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC---C----CcccchHHH----HHHHc----c-----CCh----------HHHHHHHHH
Confidence 3577899999999999999983 1 112222111 11100 0 000 112334444
Q ss_pred cCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchH-HHhccCeE
Q 042733 128 VELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSID-IFYSFDEL 206 (531)
Q Consensus 128 l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~-i~~~~d~v 206 (531)
+|..... .-|+.+|..++.....+|+.+.++ .+.++|.....+.+.++.. .+.++|+.+|..... ....||.+
T Consensus 54 ~g~~~~~--~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~v 127 (206)
T 1jjv_A 54 FGAQILT--EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRI 127 (206)
T ss_dssp HCTTCC--------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEE
T ss_pred hCHHHhc--cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEE
Confidence 5543221 126777888888887777654322 3345666666555544332 356788888875422 24568888
Q ss_pred EEEc
Q 042733 207 FLLK 210 (531)
Q Consensus 207 ~lL~ 210 (531)
++++
T Consensus 128 i~l~ 131 (206)
T 1jjv_A 128 LVVD 131 (206)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 169
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.39 E-value=0.00049 Score=70.37 Aligned_cols=44 Identities=14% Similarity=0.109 Sum_probs=35.6
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH---cCCeEEEEecCCc
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVD---MGRTVVCTIHQPS 196 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~---~g~tvi~~~H~~~ 196 (531)
.+|.++++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 46889999999876 88888888888776655 5778999999874
No 170
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.31 E-value=0.00025 Score=72.98 Aligned_cols=128 Identities=15% Similarity=0.085 Sum_probs=70.0
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCC---------ceEEEEEEEcCcccchhhhcceEEEEecCCCCC---CCCcHHhH---
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPG---------GYITRNITVSGYPEKQETFARILGYCEQNDIHS---PHDTLYDF--- 113 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~---------g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~---~~ltv~e~--- 113 (531)
-..+|++|||||||+|.|+|.... ....+.+.++|.+.. +....|++.+.+... ...|..+.
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~~lve~f~~tl~~~~~a 258 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPPQIVDAFFVTLSEAKYS 258 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCGGGHHHHHHHHHGGGGS
T ss_pred EEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCHHHHHHHHHHHHHHHhC
Confidence 468999999999999999995321 123577777764321 111223222211000 00000000
Q ss_pred ------------H---HHHHHHHHHHHHhcCCchh--------hhccH-HHHHHHHHH----HHH-hhCCCeEEEeCCCC
Q 042733 114 ------------T---HCLYMFIEEGMELVELNPF--------RQALF-EQRKRLTVA----VEF-VANPSIISRDEPIS 164 (531)
Q Consensus 114 ------------~---~~~~~~~~~~l~~l~l~~~--------~~~~~-GerqRv~iA----~aL-~~~p~lllLDEPts 164 (531)
. ......+.+.++.+++.+. .|..- ++++|+.++ +++ ..+|++ +|+|
T Consensus 259 D~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~S 334 (364)
T 2qtf_A 259 DALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPIS 334 (364)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECB
T ss_pred CEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEE
Confidence 0 1112234556666654332 12211 567888777 554 334454 8999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 042733 165 GLDARAATTVIRMVRNTVD 183 (531)
Q Consensus 165 gLD~~~~~~i~~~L~~l~~ 183 (531)
++|......+.+.|.+...
T Consensus 335 A~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhc
Confidence 9999999999999887654
No 171
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.29 E-value=4e-05 Score=81.62 Aligned_cols=48 Identities=17% Similarity=0.095 Sum_probs=36.8
Q ss_pred EEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCccc
Q 042733 30 LNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPE 86 (531)
Q Consensus 30 ~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~ 86 (531)
++|+++.++ . .+.+.+||||||||||||+|+|..++ .+|+|.++|.+.
T Consensus 20 l~~vsl~i~----~---e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~ 67 (483)
T 3euj_A 20 FFARTFDFD----E---LVTTLSGGNGAGKSTTMAGFVTALIP--DLTLLNFRNTTE 67 (483)
T ss_dssp EEEEEEECC----S---SEEEEECCTTSSHHHHHHHHHHHHCC--CTTTCCCCCTTS
T ss_pred ccceEEEEc----c---ceEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEc
Confidence 567777764 1 57889999999999999999996432 246788888764
No 172
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.05 E-value=0.0019 Score=63.81 Aligned_cols=67 Identities=24% Similarity=0.160 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHH----------HHHHHHHHHHHHHH----cCCeEEEEecCCc---hHHHhc
Q 042733 140 QRKRLTVAVEFVANPSIISRDEPISGLDAR----------AATTVIRMVRNTVD----MGRTVVCTIHQPS---IDIFYS 202 (531)
Q Consensus 140 erqRv~iA~aL~~~p~lllLDEPtsgLD~~----------~~~~i~~~L~~l~~----~g~tvi~~~H~~~---~~i~~~ 202 (531)
++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..||.+|++|. ..+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R 179 (297)
T 3b9p_A 100 KLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRR 179 (297)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhh
Confidence 445556666777899999999998766532 22233433433221 1345777888753 233344
Q ss_pred cCeE
Q 042733 203 FDEL 206 (531)
Q Consensus 203 ~d~v 206 (531)
|++.
T Consensus 180 ~~~~ 183 (297)
T 3b9p_A 180 FTKR 183 (297)
T ss_dssp CCEE
T ss_pred CCeE
Confidence 5544
No 173
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.04 E-value=0.0017 Score=65.96 Aligned_cols=115 Identities=10% Similarity=0.025 Sum_probs=69.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGM 125 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l 125 (531)
.++....++.|+|||||+.-++..... . ...+.|+.- .++..+. ..+.....
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~---------~---------g~~Vl~fSl------Ems~~ql----~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN---------D---------DRGVAVFSL------EMSAEQL----ALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH---------T---------TCEEEEEES------SSCHHHH----HHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH---------c---------CCeEEEEeC------CCCHHHH----HHHHHHHh
Confidence 467888888899999999988763210 0 112333322 1232221 11222222
Q ss_pred HhcCCchhhhc--cHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCeEEEEec
Q 042733 126 ELVELNPFRQA--LFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM--GRTVVCTIH 193 (531)
Q Consensus 126 ~~l~l~~~~~~--~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tvi~~~H 193 (531)
..+++.+..+. ..++++|+..|...+.++++.+.|+|... ..++...+++++++ |..+|++-|
T Consensus 98 ~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 98 TSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred hCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 22333333222 23799999999999999999999998654 33666677777654 567777754
No 174
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.93 E-value=0.004 Score=63.35 Aligned_cols=54 Identities=7% Similarity=0.030 Sum_probs=35.9
Q ss_pred HHHHHHHHHh----hCCCeEEEeCCCCCCCHH------------HHHHHHHHHHHHHHc-CCeEEEEecCC
Q 042733 142 KRLTVAVEFV----ANPSIISRDEPISGLDAR------------AATTVIRMVRNTVDM-GRTVVCTIHQP 195 (531)
Q Consensus 142 qRv~iA~aL~----~~p~lllLDEPtsgLD~~------------~~~~i~~~L~~l~~~-g~tvi~~~H~~ 195 (531)
+.+..++.++ .+++++++|+.++-.+.. ...+++..|+.++++ +.+||++.|-.
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 3444555555 579999999999866432 124555666666654 88999888853
No 175
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.86 E-value=5e-05 Score=71.08 Aligned_cols=34 Identities=18% Similarity=0.051 Sum_probs=27.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCccc
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPE 86 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~ 86 (531)
.+-+.+||+|||||||+|+|+|.. |.+.+++.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~ 63 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAF 63 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh------CCeEEccccc
Confidence 467889999999999999999865 3566776543
No 176
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.86 E-value=6.4e-06 Score=81.42 Aligned_cols=33 Identities=36% Similarity=0.362 Sum_probs=25.8
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYP 85 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~ 85 (531)
-+.+||+|+|||||+++|++.... |.+.+++.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~----~~i~~~~~~ 108 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARV----PFITASGSD 108 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC----CEEEEEHHH
T ss_pred EEEECCCcChHHHHHHHHHHHcCC----CEEEecHHH
Confidence 477899999999999999997643 456666643
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.76 E-value=0.00029 Score=78.35 Aligned_cols=124 Identities=10% Similarity=0.005 Sum_probs=65.1
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHH
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGM 125 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l 125 (531)
-+.+|++|+|||||++.|++....-...|++ .+|.... ....++.+++..|...+... ++.. .++
T Consensus 12 i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~----------nli 79 (665)
T 2dy1_A 12 VALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV----------FLL 79 (665)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE----------EEE
T ss_pred EEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE----------EEE
Confidence 4678999999999999999632210112444 3443321 12223445555543322110 0000 000
Q ss_pred HhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCch
Q 042733 126 ELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSI 197 (531)
Q Consensus 126 ~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 197 (531)
+.-|..+. ........-..+..++++| |+.|+|+.+.. .++.+.+.+.++|++.|..+.
T Consensus 80 DTpG~~~f--------~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~----~~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 80 DAPGYGDF--------VGEIRGALEAADAALVAVS-AEAGVQVGTER----AWTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp ECCCSGGG--------HHHHHHHHHHCSEEEEEEE-TTTCSCHHHHH----HHHHHHHTTCCEEEEEECGGG
T ss_pred eCCCccch--------HHHHHHHHhhcCcEEEEEc-CCcccchhHHH----HHHHHHHccCCEEEEecCCch
Confidence 00111110 0112222335688899999 99999988773 333333468888899998764
No 178
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.65 E-value=0.0034 Score=62.52 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=19.8
Q ss_pred EEEEcCCCchHHHHHHHHhCCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
-+..||.|+|||||+++|++...
T Consensus 52 vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 52 VLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT
T ss_pred EEEECCCCcCHHHHHHHHHHHhC
Confidence 46789999999999999998653
No 179
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.62 E-value=0.007 Score=60.95 Aligned_cols=54 Identities=15% Similarity=0.109 Sum_probs=37.2
Q ss_pred HHHHHHHHHHh---hCCCeEEEeCCCCCCCH--------HH----HHHHHHHHHHHHHc-CCeEEEEecC
Q 042733 141 RKRLTVAVEFV---ANPSIISRDEPISGLDA--------RA----ATTVIRMVRNTVDM-GRTVVCTIHQ 194 (531)
Q Consensus 141 rqRv~iA~aL~---~~p~lllLDEPtsgLD~--------~~----~~~i~~~L~~l~~~-g~tvi~~~H~ 194 (531)
.+.+..++.++ .+|+++++|+.++-.+. .. ..+++..|++++++ +.+||++.|-
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 35666777777 67999999999876532 11 24455566666654 8899988774
No 180
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.51 E-value=0.00091 Score=61.66 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
+-+.+||+|||||||+|+|+|..+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 567899999999999999999754
No 181
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.41 E-value=0.014 Score=59.71 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G 68 (531)
.+....|++|+|||||...++.
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6788889999999999988876
No 182
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.40 E-value=0.0097 Score=59.55 Aligned_cols=46 Identities=4% Similarity=0.070 Sum_probs=35.3
Q ss_pred hhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 151 VANPSIISRDEPIS-GLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 151 ~~~p~lllLDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
..++++|++||+-. .-|...+..+...+..+.+.|..+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 35799999999865 33447788888888888777787888877553
No 183
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.34 E-value=0.00019 Score=70.03 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=22.5
Q ss_pred eEEEEEeE-EEEEeCCCccccccEEEEEcC---C---------CchHHHHHHHHhCCC
Q 042733 26 HYISLNEI-VYSVDMPQIGDLNSLSGAFRP---G---------GAGKTTLMDVLAGRK 70 (531)
Q Consensus 26 ~~l~~~~l-s~~~~~~~~~iL~~vs~~i~~---g---------GaGKTTLLk~L~G~~ 70 (531)
..++++|+ +++|. +...+|+++|+.+.+ | ||||||+.++|++..
T Consensus 16 ~~l~~~~~~~~~~~-~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFD-EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEec-CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36899999 99983 244577777665555 4 999999999999854
No 184
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.30 E-value=0.024 Score=56.79 Aligned_cols=114 Identities=12% Similarity=0.015 Sum_probs=68.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCC-CCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRK-PGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEG 124 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~-~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~ 124 (531)
.++....++.|+|||||+..++... ..+ ..+.|+.-+ ++..+. ..+....
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g-------------------~~vl~~slE------~s~~~l----~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND-------------------DVVNLHSLE------MGKKEN----IKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT-------------------CEEEEEESS------SCHHHH----HHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC-------------------CeEEEEECC------CCHHHH----HHHHHHH
Confidence 3577778888999999998887521 111 123444322 222221 1122222
Q ss_pred HHhcCCchhhhcc----HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCe--EEEEec
Q 042733 125 MELVELNPFRQAL----FEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRT--VVCTIH 193 (531)
Q Consensus 125 l~~l~l~~~~~~~----~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~t--vi~~~H 193 (531)
...+++.+..+.. .++++|+..|...+.++++.+.|+|... ..++.+.++++.++ |.. +|++-|
T Consensus 119 ~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 119 AGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 2223333332222 2788999999999999999999998643 34566667776654 666 777766
No 185
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.24 E-value=0.0012 Score=67.26 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=19.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
..-+..||+|+|||||++.+++.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34577899999999999999984
No 186
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.22 E-value=0.0033 Score=62.74 Aligned_cols=58 Identities=9% Similarity=0.015 Sum_probs=39.0
Q ss_pred HHHHHHh--hCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHHHc-CC--eEEEEecCCchHHHhccCeEE
Q 042733 145 TVAVEFV--ANPSIISRDEPISGLDARA-ATTVIRMVRNTVDM-GR--TVVCTIHQPSIDIFYSFDELF 207 (531)
Q Consensus 145 ~iA~aL~--~~p~lllLDEPtsgLD~~~-~~~i~~~L~~l~~~-g~--tvi~~~H~~~~~i~~~~d~v~ 207 (531)
.+++.+. ..|.++++ +.+|... +..+.+.++++++. |. .+.++.|+-. .+..++|.+.
T Consensus 107 ~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 107 MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 5566666 68889988 7899876 66777888888764 53 4555666543 4555555543
No 187
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.18 E-value=0.0019 Score=58.87 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCC
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.++++.+||||||||||+++|.+..
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3688999999999999999998843
No 188
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.08 E-value=0.00067 Score=65.97 Aligned_cols=54 Identities=22% Similarity=0.111 Sum_probs=37.8
Q ss_pred cEEEEEcCCCchHHHHHHHHh---CCCCCceEEEEEE--------EcCcccc----hhhhcceEEEEecCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLA---GRKPGGYITRNIT--------VSGYPEK----QETFARILGYCEQND 102 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~---G~~~~g~~~G~i~--------~~g~~~~----~~~~~~~igyv~Q~~ 102 (531)
.+-+.+||+||||||++|+|+ |... ..+|.+. .+|.+.. ...+++.+++++|.+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 467889999999999999999 8643 2346665 5665442 123556688888754
No 189
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.05 E-value=0.0026 Score=58.22 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=25.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEc
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVS 82 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~ 82 (531)
.+.+.+||+|||||||+|+|++..+.. ..|.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~~~-~~~~i~~t 40 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHPDR-FAYPIPHT 40 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTT-EECCCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCcc-EEEeeecc
Confidence 467889999999999999999965421 33444443
No 190
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.05 E-value=0.013 Score=61.43 Aligned_cols=50 Identities=14% Similarity=0.018 Sum_probs=32.8
Q ss_pred HHHHHHhhCCCeEEEeCCC-CC--CCHHHHHHHHHHHHHHHHcCCeEEEEecC
Q 042733 145 TVAVEFVANPSIISRDEPI-SG--LDARAATTVIRMVRNTVDMGRTVVCTIHQ 194 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPt-sg--LD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 194 (531)
+++.+...+++++++|+|- .+ .|+....++.+.++.+......+++..|.
T Consensus 171 al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 4555555799999999997 45 78877777777665553333444444543
No 191
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.04 E-value=0.026 Score=54.33 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+..||+|+|||||+++|++..
T Consensus 48 vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHc
Confidence 4678999999999999999854
No 192
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.03 E-value=0.0055 Score=58.52 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=41.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEec---------CCchHHHhccCeEEEEc
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH---------QPSIDIFYSFDELFLLK 210 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~~~~~i~~~~d~v~lL~ 210 (531)
+++++++||--. |+. .+++.++.+++.|.+||++-| .+..++..++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 664 355566777777999999999 55667888899999875
No 193
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.00 E-value=0.0053 Score=69.67 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.1
Q ss_pred EEEEcCCCchHHHHHHHHhCCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
-+..||+|+|||||+++|+|...
T Consensus 241 vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 241 ILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp EEECSCTTSSHHHHHHHHHHTTT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 46778999999999999999764
No 194
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.89 E-value=0.011 Score=57.66 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=32.0
Q ss_pred HHHHhhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHHH---c-CCeEEEEecCC
Q 042733 147 AVEFVANPSIISRDEPIS----------GLDARAATTVIRMVRNTVD---M-GRTVVCTIHQP 195 (531)
Q Consensus 147 A~aL~~~p~lllLDEPts----------gLD~~~~~~i~~~L~~l~~---~-g~tvi~~~H~~ 195 (531)
..+...+|.+|++||.-. +-|......+.+++..+.. . +..+|.+++.+
T Consensus 104 ~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 104 KLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRP 166 (285)
T ss_dssp HHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCG
T ss_pred HHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc
Confidence 334456789999999743 2355667777777776632 2 44577777765
No 195
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.87 E-value=0.0099 Score=54.97 Aligned_cols=50 Identities=6% Similarity=0.007 Sum_probs=28.4
Q ss_pred hCCCeEEEeCCCC-CCCHHHHHHHH-HHHHHHHHcCCeEEEEecCCchHHHh
Q 042733 152 ANPSIISRDEPIS-GLDARAATTVI-RMVRNTVDMGRTVVCTIHQPSIDIFY 201 (531)
Q Consensus 152 ~~p~lllLDEPts-gLD~~~~~~i~-~~L~~l~~~g~tvi~~~H~~~~~i~~ 201 (531)
.++++|++||+-. .++...+..++ .++......+..+|++|+.+..++..
T Consensus 114 ~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 114 KKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp HHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHH
T ss_pred cCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHH
Confidence 4678999999932 23433344344 35555444566777777765444433
No 196
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.77 E-value=0.0049 Score=54.86 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHh
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLA 67 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~ 67 (531)
.++++.+|||||||||++++|.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999986
No 197
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.61 E-value=0.044 Score=52.10 Aligned_cols=42 Identities=5% Similarity=0.078 Sum_probs=29.3
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH--cCCeEEEEec
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVD--MGRTVVCTIH 193 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~--~g~tvi~~~H 193 (531)
.+|+++++..+.+.++......+..+++.... ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 47899999999888888666555555544332 1357888888
No 198
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.58 E-value=0.0048 Score=61.12 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=23.8
Q ss_pred HHHhhCC-CeEEEeCCCCCCCHHHHHHHHHHHHH
Q 042733 148 VEFVANP-SIISRDEPISGLDARAATTVIRMVRN 180 (531)
Q Consensus 148 ~aL~~~p-~lllLDEPtsgLD~~~~~~i~~~L~~ 180 (531)
.++...| .++++||. ..|++..+..+++.+.+
T Consensus 113 ~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~ 145 (311)
T 4fcw_A 113 EAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDD 145 (311)
T ss_dssp HHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHH
T ss_pred HHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhc
Confidence 3344344 79999998 67888888888888765
No 199
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.55 E-value=0.014 Score=62.63 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G 68 (531)
+++..+|+|||||||||++|.+
T Consensus 61 g~n~i~G~NGaGKS~lleAl~~ 82 (517)
T 4ad8_A 61 GFCAFTGETGAGKSIIVDALGL 82 (517)
T ss_dssp SEEEEEESHHHHHHHHTHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHH
Confidence 5788888889999999999944
No 200
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.53 E-value=0.047 Score=54.89 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=26.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYP 85 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~ 85 (531)
.+-+.+|+||+||||++..|++.... ..|++.+.+.+
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D 142 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAAD 142 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 46677899999999999999995321 01455665544
No 201
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.45 E-value=0.003 Score=60.30 Aligned_cols=34 Identities=21% Similarity=0.105 Sum_probs=26.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCccc
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPE 86 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~ 86 (531)
.+-+..|++|||||||+|+|+|. + |++.+.+.+.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~--~----g~v~~~~~~~ 54 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY--K----NDICLLTEPV 54 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG--T----TTEEEECCTH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc--c----CCeEEEecCH
Confidence 46678899999999999999998 2 3566766653
No 202
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.44 E-value=0.039 Score=57.97 Aligned_cols=68 Identities=12% Similarity=0.079 Sum_probs=44.9
Q ss_pred HHHHHHHh--hCCCeEEEeCCCCCCCH----------HHHHHHHHHHHHHHHc-CCeEEEEecCC-----------ch--
Q 042733 144 LTVAVEFV--ANPSIISRDEPISGLDA----------RAATTVIRMVRNTVDM-GRTVVCTIHQP-----------SI-- 197 (531)
Q Consensus 144 v~iA~aL~--~~p~lllLDEPtsgLD~----------~~~~~i~~~L~~l~~~-g~tvi~~~H~~-----------~~-- 197 (531)
.+.++.+. .+++++++|..+.-.+. ....++.+.|+.++++ +.+||+++|-. ..
T Consensus 299 ~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~d 378 (444)
T 2q6t_A 299 RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSD 378 (444)
T ss_dssp HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGG
T ss_pred HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHH
Confidence 34455555 58999999998754332 1234677778888875 89999998832 10
Q ss_pred -----HHHhccCeEEEEcc
Q 042733 198 -----DIFYSFDELFLLKQ 211 (531)
Q Consensus 198 -----~i~~~~d~v~lL~~ 211 (531)
.+...+|.|+.|.+
T Consensus 379 lr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 379 LRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp GGGGCTTGGGCSEEEEEEE
T ss_pred hcchhHHHHhCCEEEEEec
Confidence 23456788888864
No 203
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.36 E-value=0.011 Score=60.44 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CeEEEEec
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMG-RTVVCTIH 193 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H 193 (531)
.++++..+++..+.+|+++++.-..+..|... ....++++.+...| .++++.+.
T Consensus 158 ~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 158 IVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred HHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788999999999999877774334445433 44556666665555 56666665
No 204
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.34 E-value=0.065 Score=54.54 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+..||.|+|||||+++|+...
T Consensus 120 vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 120 ILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 4567899999999999998754
No 205
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.33 E-value=0.014 Score=54.84 Aligned_cols=45 Identities=7% Similarity=0.092 Sum_probs=31.5
Q ss_pred hCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCe-EEEEecCCc
Q 042733 152 ANPSIISRDEPISGL-DARAATTVIRMVRNTVDMGRT-VVCTIHQPS 196 (531)
Q Consensus 152 ~~p~lllLDEPtsgL-D~~~~~~i~~~L~~l~~~g~t-vi~~~H~~~ 196 (531)
.+|+++++||.-.-- +......+.+.+....+.+.. +|++++...
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 578999999965422 233377788888887766665 888877543
No 206
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.29 E-value=0.007 Score=62.04 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G 68 (531)
++++.+||||||||||+++|.+
T Consensus 27 g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHH
Confidence 5899999999999999999986
No 207
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.27 E-value=0.045 Score=52.05 Aligned_cols=42 Identities=19% Similarity=0.098 Sum_probs=26.6
Q ss_pred HhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCeEEEE
Q 042733 150 FVANPSIISRDEPIS-GLDARAATTVIRMVRNTVDMGRTVVCT 191 (531)
Q Consensus 150 L~~~p~lllLDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~ 191 (531)
.+.+-+++++||.-. ++|.......++.+.....+-++++++
T Consensus 173 ~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~S 215 (235)
T 3llm_A 173 GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMS 215 (235)
T ss_dssp CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 578899999999976 687766654444444332222344444
No 208
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.26 E-value=0.0081 Score=55.53 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=21.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.+-+.+||+|||||||+++|++..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 367889999999999999999976
No 209
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.01 E-value=0.089 Score=50.27 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+..||.|+|||||.+.++...
T Consensus 42 vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 42 ALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3577999999999999998743
No 210
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.00 E-value=0.011 Score=55.24 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
.+-+.+||+|||||||++.|++..+
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3567899999999999999999765
No 211
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.96 E-value=0.0096 Score=53.46 Aligned_cols=24 Identities=33% Similarity=0.227 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
+-+.+|++|||||||+++|++...
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 457789999999999999999653
No 212
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.85 E-value=0.023 Score=52.81 Aligned_cols=25 Identities=32% Similarity=0.322 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
.+-+..|++|||||||.+.|++..+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567889999999999999999753
No 213
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.83 E-value=0.014 Score=54.62 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHh
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLA 67 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~ 67 (531)
.+++..+|||||||||++++|.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 3789999999999999999885
No 214
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.72 E-value=0.013 Score=54.36 Aligned_cols=24 Identities=25% Similarity=0.164 Sum_probs=21.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.+-..+||+|||||||+++|++..
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999964
No 215
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.68 E-value=0.013 Score=59.14 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+-+.+||+|||||||+++|.+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999964
No 216
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.65 E-value=0.014 Score=52.61 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.+-+.+|++||||||++++|++..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999864
No 217
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.65 E-value=0.24 Score=49.56 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=18.3
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+..||.|+|||||.+.++...
T Consensus 49 LL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 49 LLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp EEESSSSSCHHHHHHHHHHHT
T ss_pred EEECCCCccHHHHHHHHHHHc
Confidence 556899999999999999854
No 218
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.53 E-value=0.012 Score=63.80 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=26.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCc
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGY 84 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~ 84 (531)
.-+.+||+|+|||||+|+|++.... ..|.+...|.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l~~--~~~~i~~~~~ 144 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSLGR--KFVRISLGGV 144 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHTC--EEEEECCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC--CeEEEEeccc
Confidence 5678999999999999999996532 3456665553
No 219
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=94.33 E-value=0.017 Score=60.42 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCC
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.++++.+|||||||||||++|++..
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhh
Confidence 3799999999999999999999854
No 220
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.14 E-value=0.27 Score=48.93 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G 68 (531)
..+....|+.|+|||||+..++.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36788889999999999998875
No 221
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.06 E-value=0.02 Score=53.12 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.+-+..|++|||||||+++|++..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 467888999999999999999953
No 222
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.04 E-value=0.035 Score=55.72 Aligned_cols=57 Identities=11% Similarity=0.101 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHH--h--hCCCeEEEeCCCCCC-----CH----------HHHHHHHHHHHHH---H-HcCCeEEEEecCC
Q 042733 139 EQRKRLTVAVEF--V--ANPSIISRDEPISGL-----DA----------RAATTVIRMVRNT---V-DMGRTVVCTIHQP 195 (531)
Q Consensus 139 GerqRv~iA~aL--~--~~p~lllLDEPtsgL-----D~----------~~~~~i~~~L~~l---~-~~g~tvi~~~H~~ 195 (531)
+|+..+.++..+ + .+|+++++|--++=. +. ..++.+-+.|++| + +.+.++|++-|-.
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~ 172 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTY 172 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCee
Confidence 555556666665 3 479999999877643 11 1234444555553 4 4589999998863
No 223
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.99 E-value=0.018 Score=53.27 Aligned_cols=42 Identities=19% Similarity=0.062 Sum_probs=20.0
Q ss_pred ccceEEEEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCC
Q 042733 23 FEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 23 ~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+.....+|+++....+ .+-+.+|+.||||||+.+.|++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~------~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 8 SSGVDLGTENLYFQSNAM------VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------------CC------CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCceeEecCCC------CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344556677887776421 245677888999999999999754
No 224
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.73 E-value=0.029 Score=52.40 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=21.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
.+-..+||+|||||||++.|.+..+
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3567789999999999999998644
No 225
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.70 E-value=0.27 Score=50.93 Aligned_cols=51 Identities=18% Similarity=0.144 Sum_probs=32.8
Q ss_pred HHHHHhhCCCeEEEeCCCCC----------CCHHHHHHHHHHHHHHHH----cCCeEEEEecCCc
Q 042733 146 VAVEFVANPSIISRDEPISG----------LDARAATTVIRMVRNTVD----MGRTVVCTIHQPS 196 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsg----------LD~~~~~~i~~~L~~l~~----~g~tvi~~~H~~~ 196 (531)
+..|-...|.|+++||--+- =|......+.++|..+-. .+..||.+|..|+
T Consensus 234 F~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd 298 (405)
T 4b4t_J 234 FVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLD 298 (405)
T ss_dssp HHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSS
T ss_pred HHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChh
Confidence 34444568999999996432 234455566666666532 2456888998875
No 226
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.66 E-value=0.088 Score=53.18 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=18.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
.-+..||.|+|||||++.++..
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 3467789999999999999874
No 227
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.53 E-value=0.026 Score=54.19 Aligned_cols=31 Identities=39% Similarity=0.413 Sum_probs=23.8
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSG 83 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g 83 (531)
-+.+||+|+|||||+++|++.... |.+.+++
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~----~~i~~~~ 82 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARV----PFITASG 82 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC----CEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC----CEEEeeH
Confidence 467899999999999999996542 3455554
No 228
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.50 E-value=0.036 Score=49.22 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.3
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-..+|++|+|||||++.++|..
T Consensus 6 v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 3678999999999999999953
No 229
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.46 E-value=0.026 Score=52.17 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHHhC
Q 042733 49 SGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G 68 (531)
-+..|++||||||+.+.|++
T Consensus 4 i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHH
Confidence 46788999999999999998
No 230
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.41 E-value=0.25 Score=47.29 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=18.8
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.|.|..
T Consensus 25 ~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 25 ILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEESSTTSSHHHHHHHHHTSC
T ss_pred EEECCCCCcHHHHHHHHhCCC
Confidence 578999999999999999964
No 231
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.36 E-value=0.034 Score=52.15 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+.+||+||||||+.++|++.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999984
No 232
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.05 E-value=0.22 Score=50.93 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=18.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G 68 (531)
.+....++.|+|||||...++.
T Consensus 75 ~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHH
Confidence 5677788889999999987765
No 233
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.00 E-value=0.29 Score=51.20 Aligned_cols=73 Identities=16% Similarity=0.244 Sum_probs=44.1
Q ss_pred HHHHHHHhhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHHH----cCCeEEEEecCCchHHHhccCeEEEE
Q 042733 144 LTVAVEFVANPSIISRDEPIS----------GLDARAATTVIRMVRNTVD----MGRTVVCTIHQPSIDIFYSFDELFLL 209 (531)
Q Consensus 144 v~iA~aL~~~p~lllLDEPts----------gLD~~~~~~i~~~L~~l~~----~g~tvi~~~H~~~~~i~~~~d~v~lL 209 (531)
-.+..|-...|.|+|+||--+ +-|......+.++|..+-. .+..||.+|..|+. .|.-+ +
T Consensus 265 ~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~-----LDpAl-l 338 (437)
T 4b4t_L 265 EMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT-----LDPAL-L 338 (437)
T ss_dssp HHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS-----SCTTT-T
T ss_pred HHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh-----hCHHH-h
Confidence 334555567899999999843 2344455556666666632 24578899998752 23322 3
Q ss_pred ccCce---eeecCCCCC
Q 042733 210 KQVGQ---EISVGPLGP 223 (531)
Q Consensus 210 ~~~G~---~v~~G~~~~ 223 (531)
.. || .++.+.|+.
T Consensus 339 Rp-GRfD~~I~i~lPd~ 354 (437)
T 4b4t_L 339 RP-GRLDRKVEIPLPNE 354 (437)
T ss_dssp ST-TSEEEEECCCCCCH
T ss_pred CC-CccceeeecCCcCH
Confidence 32 43 467777753
No 234
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.95 E-value=0.11 Score=55.42 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+..||.|+|||+|.++|+...
T Consensus 241 vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 241 ILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 3567888999999999998754
No 235
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.93 E-value=0.33 Score=50.69 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=32.4
Q ss_pred HHHHhhCCCeEEEeCC----------CCCCCHHHHHHHHHHHHHHHH----cCCeEEEEecCCc
Q 042733 147 AVEFVANPSIISRDEP----------ISGLDARAATTVIRMVRNTVD----MGRTVVCTIHQPS 196 (531)
Q Consensus 147 A~aL~~~p~lllLDEP----------tsgLD~~~~~~i~~~L~~l~~----~g~tvi~~~H~~~ 196 (531)
..|-...|.++++||- .++-|....+.+.++|..+-. .+..||.+|+.|+
T Consensus 259 ~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 259 RLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp HHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred HHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 3344567999999996 234455555556666666532 2557888998875
No 236
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.89 E-value=0.062 Score=56.33 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.5
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-..+|++|+|||||+|.|+|..
T Consensus 183 vaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 183 VAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEECSTTSSHHHHHHHHHTST
T ss_pred EEEECCCCCCHHHHHHHHhCCc
Confidence 3678999999999999999964
No 237
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.81 E-value=0.28 Score=49.79 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.1
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+..||.|+|||||.++++...
T Consensus 88 LL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 88 LLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp EEECSTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHHh
Confidence 556889999999999999854
No 238
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.74 E-value=0.054 Score=48.80 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-..+|++|+|||||++.|+|.
T Consensus 10 i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999995
No 239
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.74 E-value=0.29 Score=51.52 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=34.2
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCC----------CHHHHHHHHHHHHHHHH----cCCeEEEEecCCc
Q 042733 143 RLTVAVEFVANPSIISRDEPISGL----------DARAATTVIRMVRNTVD----MGRTVVCTIHQPS 196 (531)
Q Consensus 143 Rv~iA~aL~~~p~lllLDEPtsgL----------D~~~~~~i~~~L~~l~~----~g~tvi~~~H~~~ 196 (531)
|-.+..|-...|.|+++||--+-. +......+.++|..+-. .+..||.+|..|+
T Consensus 292 r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd 359 (467)
T 4b4t_H 292 RELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN 359 (467)
T ss_dssp HHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT
T ss_pred HHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcc
Confidence 334455556789999999986432 33445556666666532 2446788888764
No 240
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=92.67 E-value=0.081 Score=54.14 Aligned_cols=21 Identities=14% Similarity=0.461 Sum_probs=19.7
Q ss_pred cEEEEEcCCCchHHHHHHHHh
Q 042733 47 SLSGAFRPGGAGKTTLMDVLA 67 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~ 67 (531)
+++...|+|||||||+|.+|.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 789999999999999999985
No 241
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.60 E-value=0.5 Score=57.33 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=38.9
Q ss_pred hCCCeEEEeCCCCCCC-H------------HHHHHHHHHHHHH---HH-cCCeEEEEecC----------C-----chHH
Q 042733 152 ANPSIISRDEPISGLD-A------------RAATTVIRMVRNT---VD-MGRTVVCTIHQ----------P-----SIDI 199 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD-~------------~~~~~i~~~L~~l---~~-~g~tvi~~~H~----------~-----~~~i 199 (531)
.+|+++++|+...=.. . ...+++.+.++++ ++ .|.+||++.|- | +..+
T Consensus 809 ~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~gs~~L 888 (1706)
T 3cmw_A 809 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 888 (1706)
T ss_dssp TCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHH
T ss_pred cCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccCCccccCCcchh
Confidence 5899999999987552 1 1234455555553 44 59999999882 1 1134
Q ss_pred HhccCeEEEEcc
Q 042733 200 FYSFDELFLLKQ 211 (531)
Q Consensus 200 ~~~~d~v~lL~~ 211 (531)
.+.+|-++.+.+
T Consensus 889 eq~ADvvl~L~R 900 (1706)
T 3cmw_A 889 KFYASVRLDIRR 900 (1706)
T ss_dssp HHHEEEEEEEEE
T ss_pred hheeeEEEEEEe
Confidence 556788888864
No 242
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.59 E-value=0.051 Score=55.94 Aligned_cols=24 Identities=29% Similarity=0.067 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.+.+..||+|||||||+++|+|..
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 466788999999999999999854
No 243
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.50 E-value=0.27 Score=51.41 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=40.9
Q ss_pred HHHHHHhhCCCeEEEeCCC----------CCCCHHHHHHHHHHHHHHHH----cCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 145 TVAVEFVANPSIISRDEPI----------SGLDARAATTVIRMVRNTVD----MGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPt----------sgLD~~~~~~i~~~L~~l~~----~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
.+..|-...|.|+++||-- ++=|......+..+|..+-. .+..||.+|..|+. .|.-+ +.
T Consensus 266 lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~-----LD~Al-lR 339 (434)
T 4b4t_M 266 AFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV-----LDPAL-LR 339 (434)
T ss_dssp HHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC-----CCTTT-CS
T ss_pred HHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh-----cCHhH-hc
Confidence 3444555789999999952 12233444455566666532 24568889988752 23222 22
Q ss_pred cCce---eeecCCCCC
Q 042733 211 QVGQ---EISVGPLGP 223 (531)
Q Consensus 211 ~~G~---~v~~G~~~~ 223 (531)
. || .++.+.|+.
T Consensus 340 p-GRfD~~I~i~lPd~ 354 (434)
T 4b4t_M 340 S-GRLDRKIEFPLPSE 354 (434)
T ss_dssp T-TSEEEEEECCCCCH
T ss_pred C-CceeEEEEeCCcCH
Confidence 2 43 467777753
No 244
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.41 E-value=0.3 Score=48.60 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+..||.|+|||+|.++++...
T Consensus 54 vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 54 ILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp EEEECSSSSCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 3667899999999999998753
No 245
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.29 E-value=0.68 Score=47.35 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+..||.|+|||+|.++|+...
T Consensus 151 vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 151 LLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 4667888999999999998764
No 246
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.28 E-value=0.33 Score=42.14 Aligned_cols=42 Identities=5% Similarity=0.046 Sum_probs=30.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
+..++++||.- .|++..+..+.+.+.+..+.+..+|+++..+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 46799999965 6788888888888776533355677776643
No 247
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.25 E-value=0.064 Score=48.48 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=18.3
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|++|+|||||++.++|.
T Consensus 6 ~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 6 MIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEESCTTSSHHHHHHHHTCC
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999995
No 248
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.05 E-value=0.069 Score=47.88 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-..+|++|+|||||++.|+|.
T Consensus 7 i~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999995
No 249
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.99 E-value=0.064 Score=54.54 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
.+-+.+|++|||||||+|.|+|.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999984
No 250
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.94 E-value=0.062 Score=49.56 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+-+..|+.||||||+.+.|++..
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 56788999999999999998753
No 251
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.72 E-value=0.059 Score=58.28 Aligned_cols=24 Identities=38% Similarity=0.248 Sum_probs=21.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.+-+.+|++|||||||+|+|+|..
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhh
Confidence 467889999999999999999964
No 252
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.59 E-value=0.086 Score=48.82 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
.+-..+||+|||||||.+.|+...+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3567889999999999999987543
No 253
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.32 E-value=0.09 Score=47.93 Aligned_cols=22 Identities=36% Similarity=0.323 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+.+..|+.|||||||++.|.+.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5577889999999999999984
No 254
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.96 E-value=0.046 Score=55.91 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=27.8
Q ss_pred EEEEEeEEEEEeCCCccccccEE---EEEcCCCchHHHHHHHHhCC
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLS---GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs---~~i~~gGaGKTTLLk~L~G~ 69 (531)
.+.+++++..+. .+.++++++ ..+|++|+|||||++.|.|.
T Consensus 17 ~v~~~~l~~~~~--~k~~~~~~~~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 17 YVGFANLPNQVH--RKSVKKGFEFTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ----CCHHHHHH--THHHHHCCEECEEECCCTTSCHHHHHHHHTTC
T ss_pred eEEeccchHHhC--CeeecCCCCEEEEEEcCCCCCHHHHHHHHhCC
Confidence 456677766553 344566665 46799999999999999885
No 255
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.91 E-value=0.81 Score=47.65 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=42.6
Q ss_pred HHHHHHhhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHHH----cCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 145 TVAVEFVANPSIISRDEPIS----------GLDARAATTVIRMVRNTVD----MGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPts----------gLD~~~~~~i~~~L~~l~~----~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
.+..|--..|.|+++||--+ +=|......+.++|..+-. .+..||.+|..|+. .|.-+ +.
T Consensus 267 lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~-----LDpAL-lR 340 (437)
T 4b4t_I 267 IFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET-----LDPAL-IR 340 (437)
T ss_dssp HHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT-----CCTTS-SC
T ss_pred HHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh-----cCHHH-hc
Confidence 34444456799999999643 2244455566666666532 24568889998752 23332 33
Q ss_pred cCce---eeecCCCCC
Q 042733 211 QVGQ---EISVGPLGP 223 (531)
Q Consensus 211 ~~G~---~v~~G~~~~ 223 (531)
. || .++.+.|+.
T Consensus 341 p-GRfD~~I~v~lPd~ 355 (437)
T 4b4t_I 341 P-GRIDRKILFENPDL 355 (437)
T ss_dssp T-TTEEEEECCCCCCH
T ss_pred C-CceeEEEEcCCcCH
Confidence 2 44 367777753
No 256
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.83 E-value=0.13 Score=45.53 Aligned_cols=21 Identities=19% Similarity=-0.009 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+..|+.||||||+.+.|+..
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999865
No 257
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.63 E-value=0.12 Score=46.70 Aligned_cols=23 Identities=30% Similarity=0.118 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+-+..|+.||||||+.+.|++..
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999853
No 258
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.57 E-value=0.11 Score=50.49 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.8
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+.+|++|||||||++.|+|..
T Consensus 7 ~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 7 ALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEECSSSSHHHHHHHHHTTC
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999964
No 259
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.50 E-value=0.59 Score=48.92 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+..||.|+|||||.++++...
T Consensus 170 vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 170 ILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 3567888999999999999854
No 260
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.26 E-value=0.11 Score=45.20 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|++|+|||||++.+.+.
T Consensus 7 ~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 7 VVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 56889999999999999874
No 261
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.03 E-value=0.99 Score=47.87 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=43.2
Q ss_pred HHHHHHHHh--hCCCeEEEeCCCCCC-------CH-HHHHHHHHHHHHHHHc-CCeEEEEecCCc---------------
Q 042733 143 RLTVAVEFV--ANPSIISRDEPISGL-------DA-RAATTVIRMVRNTVDM-GRTVVCTIHQPS--------------- 196 (531)
Q Consensus 143 Rv~iA~aL~--~~p~lllLDEPtsgL-------D~-~~~~~i~~~L~~l~~~-g~tvi~~~H~~~--------------- 196 (531)
-++.++.++ .+|+++++|=-+. + +. ....++.+.|+.++++ +.+||+++|-..
T Consensus 342 i~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l 420 (503)
T 1q57_A 342 LLAKLAYMRSGLGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSI 420 (503)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCS
T ss_pred HHHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCCh
Confidence 334444444 4799999995543 2 21 2334577778888765 999999988542
Q ss_pred ------hHHHhccCeEEEEcc
Q 042733 197 ------IDIFYSFDELFLLKQ 211 (531)
Q Consensus 197 ------~~i~~~~d~v~lL~~ 211 (531)
..+...+|-|+.|.+
T Consensus 421 ~dlr~s~~ie~~aD~vi~l~r 441 (503)
T 1q57_A 421 TDLRGSGALRQLSDTIIALER 441 (503)
T ss_dssp SSCSSSSHHHHHCSEEEEEEE
T ss_pred hhhccchHhhecCcEEEEEEe
Confidence 123445788888854
No 262
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=89.87 E-value=1.3 Score=43.69 Aligned_cols=42 Identities=12% Similarity=0.076 Sum_probs=28.6
Q ss_pred CCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 153 NPSIISRDEPISGLD-ARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 153 ~p~lllLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
+++++++||.- .|. ......+.+.+.+.. .+..+|+++.++.
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYS-SNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHG-GGCEEEEEESSGG
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcc
Confidence 78999999984 344 556666666665543 3567888887654
No 263
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=89.86 E-value=0.18 Score=53.01 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCC-CCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 140 QRKRLTVAVEFVANPSIISRDEP-ISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 140 erqRv~iA~aL~~~p~lllLDEP-tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
+++....+...+.+++++++... +.++.... ..+.+.++ +.++.+|++.+-.+
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~D 142 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKLD 142 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC-
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECcc
Confidence 44455566667778887665544 44565544 44555543 35777777776544
No 264
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.81 E-value=0.16 Score=44.39 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 7 ~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 7 AVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEECCTTSSHHHHHHHHHTC
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999984
No 265
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.65 E-value=0.18 Score=44.41 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.7
Q ss_pred EEEEEcCCCchHHHHHHHH
Q 042733 48 LSGAFRPGGAGKTTLMDVL 66 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L 66 (531)
+-+..|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3467889999999999999
No 266
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.60 E-value=0.14 Score=44.77 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 9 ~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 9 VVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEECSTTSSHHHHHHHHHHC
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 56789999999999999874
No 267
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.58 E-value=0.13 Score=46.36 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.3
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+.+|+.|+|||||++.|.+..
T Consensus 51 i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 51 IIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 3678999999999999999864
No 268
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.45 E-value=0.9 Score=55.94 Aligned_cols=60 Identities=10% Similarity=0.044 Sum_probs=39.1
Q ss_pred hCCCeEEEeCCCCCCC-H------------HHHHHHHHHHHHH---HH-cCCeEEEEecCCch---------------HH
Q 042733 152 ANPSIISRDEPISGLD-A------------RAATTVIRMVRNT---VD-MGRTVVCTIHQPSI---------------DI 199 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD-~------------~~~~~i~~~L~~l---~~-~g~tvi~~~H~~~~---------------~i 199 (531)
.+|+++++|.-++-.. + ..++.+.+.|+++ ++ .+.+||++.|-... .+
T Consensus 460 ~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~al 539 (2050)
T 3cmu_A 460 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 539 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHH
T ss_pred cCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchh
Confidence 5799999999876552 1 1234455666665 44 58899998874211 24
Q ss_pred HhccCeEEEEcc
Q 042733 200 FYSFDELFLLKQ 211 (531)
Q Consensus 200 ~~~~d~v~lL~~ 211 (531)
...+|-++.|.+
T Consensus 540 e~~ADv~l~L~R 551 (2050)
T 3cmu_A 540 KFYASVRLDIRR 551 (2050)
T ss_dssp HHHEEEEEEEEE
T ss_pred hhhCCEEEEEEe
Confidence 456788888875
No 269
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.38 E-value=0.2 Score=44.74 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
+-...|+.||||||+.+.|+....
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 346778999999999999998653
No 270
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.32 E-value=0.15 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+.+|++|+|||||++.|+|.
T Consensus 58 ~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 58 RLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4567889999999999999984
No 271
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.29 E-value=0.18 Score=45.52 Aligned_cols=21 Identities=38% Similarity=0.341 Sum_probs=17.9
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+..|+.||||||+.+.|+..
T Consensus 7 I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 466789999999999999853
No 272
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.25 E-value=0.18 Score=45.21 Aligned_cols=22 Identities=32% Similarity=0.196 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-...|+.||||||+.+.|+...
T Consensus 7 i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHc
Confidence 3567899999999999998753
No 273
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.20 E-value=0.21 Score=45.21 Aligned_cols=23 Identities=30% Similarity=0.195 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+-...|++||||||+.+.|++..
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 45677899999999999999853
No 274
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.20 E-value=0.16 Score=44.35 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=17.9
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.|..
T Consensus 6 ~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 6 LLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEESTTSSHHHHHHHHCCC-
T ss_pred EEECCCCCCHHHHHHHHcCcc
Confidence 468899999999999999853
No 275
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.07 E-value=0.16 Score=44.10 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=18.4
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 5 ~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 5 VIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEECCTTSSHHHHHHHHHHCC
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999854
No 276
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.00 E-value=0.2 Score=44.04 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.1
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.|..
T Consensus 8 ~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 8 VLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEECCTTSSHHHHHHHHHCC-
T ss_pred EEECCCCccHHHHHHHHhcCC
Confidence 568899999999999999853
No 277
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=88.93 E-value=0.34 Score=43.91 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|++|+|||||++.+.+.
T Consensus 27 ~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 27 LFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 67889999999999999973
No 278
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.89 E-value=0.17 Score=44.07 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 8 ~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 8 IMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 46789999999999999874
No 279
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.79 E-value=1.8 Score=45.25 Aligned_cols=50 Identities=18% Similarity=0.115 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCe--EEEEec
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRT--VVCTIH 193 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~t--vi~~~H 193 (531)
++.+|+.-|...+.+.++.+.|+|. ++.. ++...++++.+ .|.. +|++-+
T Consensus 266 ~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~---~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 266 EDWGKLSMAIGEISNSNINIFDKAG--QSVN---YIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp SCHHHHHHHHHHHHTSCEEEECCSS--CBHH---HHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCC--CCHH---HHHHHHHHHHHHhCCCCeEEEEec
Confidence 4677888888888888898888874 5443 45555666654 3666 777754
No 280
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.78 E-value=0.24 Score=44.15 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=17.8
Q ss_pred EEEEcCCCchHHHHHHHHhC
Q 042733 49 SGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G 68 (531)
-...|+.||||||+.+.|+.
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 45678999999999999987
No 281
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.77 E-value=0.57 Score=52.77 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=18.5
Q ss_pred EEEcCCCchHHHHHHHHhCCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
+..||.|+|||||.|++++...
T Consensus 242 LL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 242 LLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp EEECCTTSCHHHHHHHHHTTTT
T ss_pred EEECCCCCCHHHHHHHHHHHhC
Confidence 4557889999999999999753
No 282
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=88.75 E-value=0.2 Score=45.67 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
...|+.||||||+.+.|+...
T Consensus 4 ~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 4 AIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEECCCccCHHHHHHHHHHhc
Confidence 467888999999999999854
No 283
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.67 E-value=0.23 Score=43.55 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 6 ~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 6 MLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEECSTTSSHHHHHHHHHCC
T ss_pred EEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999974
No 284
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.64 E-value=0.2 Score=45.25 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.2
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.|.+..
T Consensus 27 ~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 27 ALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEBTTSSHHHHHHHHHTC-
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999863
No 285
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.57 E-value=0.2 Score=44.34 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.|.+.
T Consensus 13 ~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 13 LIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEECCTTSCHHHHHHHHCSC
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 56889999999999999985
No 286
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=88.49 E-value=0.2 Score=44.91 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=18.6
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.|..
T Consensus 27 ~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 27 AFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEBTTSSHHHHHHHHHTSC
T ss_pred EEECCCCCCHHHHHHHHHcCc
Confidence 578899999999999999964
No 287
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=88.42 E-value=0.32 Score=45.15 Aligned_cols=70 Identities=17% Similarity=0.049 Sum_probs=52.4
Q ss_pred HHHHHHHHHHh--hCCCeEEEeCCCC--CCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 141 RKRLTVAVEFV--ANPSIISRDEPIS--GLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 141 rqRv~iA~aL~--~~p~lllLDEPts--gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
++.+..|+..+ .+.++++|||.+. .++.....++++.|.+ +-.+..||+|...+..++.+.+|-|--|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRP 179 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence 44666677777 5689999999976 2344445567777753 224788999999999999999999988864
No 288
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.40 E-value=0.24 Score=43.79 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 12 ~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 12 TIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp EEESCTTTTHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999984
No 289
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.37 E-value=0.25 Score=47.61 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+-...||+|||||||.+.|++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 34678999999999999999854
No 290
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.33 E-value=0.21 Score=46.03 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=18.2
Q ss_pred EEEcCCCchHHHHHHHHhCCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
...||+|||||||++.|....+
T Consensus 5 Vi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 5 VISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEECCTTSSHHHHHHHHHHHCT
T ss_pred EEECCCCCCHHHHHHHHHHhCC
Confidence 3578999999999999976543
No 291
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.30 E-value=1.4 Score=53.40 Aligned_cols=60 Identities=8% Similarity=0.025 Sum_probs=39.2
Q ss_pred hCCCeEEEeCCCCCCCH-------------HHHHHHHHHHHHH---HH-cCCeEEEEecCCc---------------hHH
Q 042733 152 ANPSIISRDEPISGLDA-------------RAATTVIRMVRNT---VD-MGRTVVCTIHQPS---------------IDI 199 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~-------------~~~~~i~~~L~~l---~~-~g~tvi~~~H~~~---------------~~i 199 (531)
.+|+++++|..++=... ...+.+.+.++++ ++ .+.+||++.|-.. ..+
T Consensus 460 ~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~al 539 (1706)
T 3cmw_A 460 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 539 (1706)
T ss_dssp TCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHH
T ss_pred cCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcce
Confidence 57999999999876541 1223444555554 34 5999999988421 134
Q ss_pred HhccCeEEEEcc
Q 042733 200 FYSFDELFLLKQ 211 (531)
Q Consensus 200 ~~~~d~v~lL~~ 211 (531)
...+|-++.+.+
T Consensus 540 e~~ADv~L~L~R 551 (1706)
T 3cmw_A 540 KFYASVRLDIRR 551 (1706)
T ss_dssp HHHEEEEEEEEE
T ss_pred eeeCCEEEEEEe
Confidence 566788887765
No 292
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.28 E-value=0.2 Score=45.03 Aligned_cols=21 Identities=38% Similarity=0.387 Sum_probs=18.7
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|++|+|||||++.+.+..
T Consensus 20 ~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 20 LLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEESTTSSHHHHHHHHCCSC
T ss_pred EEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999863
No 293
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=88.27 E-value=0.21 Score=44.64 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=17.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 5 ~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 5 IFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEBTTSSHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHhCc
Confidence 46789999999999999985
No 294
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.22 E-value=0.19 Score=43.88 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=18.3
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 10 ~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 10 CLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEECCTTSSHHHHHHHHHHSC
T ss_pred EEECcCCCCHHHHHHHHHcCC
Confidence 567899999999999999853
No 295
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.20 E-value=0.19 Score=45.16 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|++|+|||||++.|++.
T Consensus 25 ~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 25 VVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999874
No 296
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.16 E-value=0.28 Score=44.46 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.|||||||++.|...
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4567788999999999999874
No 297
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.08 E-value=0.2 Score=43.68 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=17.6
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 7 ~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 7 VLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999874
No 298
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=88.04 E-value=0.19 Score=46.09 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|++|+|||||++.+.+.
T Consensus 29 ~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 29 VFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEETTSSHHHHHHHHSCC
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 67889999999999999874
No 299
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=87.89 E-value=0.21 Score=43.35 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=17.5
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 7 ~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 7 VVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 56889999999999999863
No 300
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.88 E-value=0.21 Score=43.75 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 10 ~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 10 VLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEECCTTSCHHHHHHHHHHC
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 56789999999999999974
No 301
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=87.87 E-value=0.21 Score=44.23 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 12 ~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 12 IILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999874
No 302
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.83 E-value=0.21 Score=43.45 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=17.6
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 7 ~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 7 VVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEECSTTSSHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999874
No 303
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=87.75 E-value=0.26 Score=48.17 Aligned_cols=20 Identities=25% Similarity=0.539 Sum_probs=18.3
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|++|+|||||++.|+|.
T Consensus 7 ~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 7 ALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEECCTTSSHHHHHHHHHCC
T ss_pred EEECCCCCCHHHHHHHHHCC
Confidence 56899999999999999995
No 304
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.74 E-value=0.22 Score=44.06 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 11 ~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 11 ILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 56889999999999999874
No 305
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=87.67 E-value=0.27 Score=44.22 Aligned_cols=21 Identities=38% Similarity=0.287 Sum_probs=17.8
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+..|+.||||||+.+.|+..
T Consensus 14 i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 14 ILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 356889999999999999843
No 306
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=87.67 E-value=0.3 Score=43.90 Aligned_cols=21 Identities=19% Similarity=0.087 Sum_probs=17.9
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-...|+.||||||+.+.|+-.
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 456788999999999999874
No 307
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.58 E-value=0.21 Score=44.21 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 13 ~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 13 VVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEECTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 56789999999999999884
No 308
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=87.57 E-value=0.21 Score=43.66 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=18.2
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 7 ~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 7 LLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEESTTSSHHHHHHHHHHCC
T ss_pred EEECcCCCCHHHHHHHHHhCC
Confidence 467899999999999999853
No 309
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=87.33 E-value=0.36 Score=46.09 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.9
Q ss_pred cEEEEEcCCCchHHHHHHHHh
Q 042733 47 SLSGAFRPGGAGKTTLMDVLA 67 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~ 67 (531)
.+....|+||+|||||++.|+
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHH
Confidence 567788999999999999998
No 310
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.21 E-value=0.33 Score=45.15 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G 68 (531)
+-+..|+.||||||+.+.|+.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 456778899999999999987
No 311
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.21 E-value=0.28 Score=45.57 Aligned_cols=23 Identities=22% Similarity=0.039 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+-...|+.||||||+.+.|++..
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 44567889999999999999864
No 312
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=87.12 E-value=0.25 Score=43.07 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=17.6
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 10 ~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 10 VLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999873
No 313
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.11 E-value=0.28 Score=43.32 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 10 ~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 10 VVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEECCTTSSHHHHHHHHHGG
T ss_pred EEECcCCCCHHHHHHHHHhC
Confidence 56789999999999999984
No 314
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=87.10 E-value=0.3 Score=43.97 Aligned_cols=21 Identities=33% Similarity=0.167 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-..+|+.||||||+.+.|+..
T Consensus 8 i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 8 IYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999864
No 315
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=87.01 E-value=0.25 Score=44.47 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.|.+.
T Consensus 11 ~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 11 VLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999985
No 316
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=86.96 E-value=0.19 Score=46.39 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
...|+.||||||+++.|+...
T Consensus 4 ~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 4 AIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHH
Confidence 456788999999999998854
No 317
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=86.92 E-value=0.25 Score=44.02 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.|.+.
T Consensus 8 ~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 8 VVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999974
No 318
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=86.84 E-value=0.3 Score=50.49 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+.+|++|+|||||+++|+|.
T Consensus 25 vgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 25 IGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp EEEECCSSSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 578999999999999999996
No 319
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.83 E-value=0.2 Score=44.58 Aligned_cols=20 Identities=35% Similarity=0.277 Sum_probs=17.4
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 22 ~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 22 LILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp EEEEETTSSHHHHHHHTCCS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 56789999999999999863
No 320
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=86.82 E-value=0.052 Score=55.91 Aligned_cols=42 Identities=19% Similarity=0.159 Sum_probs=31.0
Q ss_pred EEEEEeEEEEEeCCCccccc--------------cEEEEEcC---------CCchHHHHHHHHhCC
Q 042733 27 YISLNEIVYSVDMPQIGDLN--------------SLSGAFRP---------GGAGKTTLMDVLAGR 69 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~--------------~vs~~i~~---------gGaGKTTLLk~L~G~ 69 (531)
.+.|+|+++.|+. ++..|+ |+.+.+++ .|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP~-er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHAN-SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESCC-SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCCC-CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 4678889988873 445666 55555544 499999999999884
No 321
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=86.79 E-value=3.8 Score=42.78 Aligned_cols=22 Identities=32% Similarity=0.286 Sum_probs=19.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G 68 (531)
.+-..+|++|+||||++..|+.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHH
Confidence 4678899999999999999986
No 322
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=86.73 E-value=0.27 Score=43.35 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 19 ~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 19 IIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 56789999999999999984
No 323
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=86.70 E-value=0.35 Score=43.66 Aligned_cols=22 Identities=36% Similarity=0.240 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-...|+.||||||+.+.|+..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3456788999999999999864
No 324
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=86.68 E-value=0.27 Score=43.02 Aligned_cols=20 Identities=35% Similarity=0.297 Sum_probs=17.6
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 11 ~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 11 LILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 56889999999999999773
No 325
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=86.65 E-value=0.27 Score=43.68 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 22 ~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 22 IMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhhC
Confidence 56789999999999999974
No 326
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=86.53 E-value=0.28 Score=43.87 Aligned_cols=20 Identities=25% Similarity=0.322 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 15 ~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 15 LALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 56789999999999999973
No 327
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=86.40 E-value=0.28 Score=47.06 Aligned_cols=24 Identities=25% Similarity=0.099 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
+-+.+|++||||||+.+.|+....
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 457789999999999999998653
No 328
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.38 E-value=0.39 Score=45.89 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-...||.||||||+.+.|+..
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999954
No 329
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=86.38 E-value=0.28 Score=44.21 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+.+|+.|+|||||++.+.+.
T Consensus 29 ~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 29 VLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEESSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHhcC
Confidence 57899999999999999984
No 330
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=86.32 E-value=0.29 Score=43.96 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=18.9
Q ss_pred EEEcCCCchHHHHHHHHhCCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
..+|+.|+|||||++.+.|...
T Consensus 18 ~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 18 VYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEECSTTSSHHHHHHHHHHTSC
T ss_pred EEECCCCCCHHHHHHHHHhhcc
Confidence 5689999999999999998643
No 331
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=86.25 E-value=0.35 Score=43.23 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=18.4
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 22 ~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 22 LMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEECSTTSSHHHHHHHHTTCC
T ss_pred EEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999853
No 332
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=86.24 E-value=0.34 Score=47.61 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+-...||+||||||+.+.|+...
T Consensus 35 livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46778999999999999998754
No 333
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=86.16 E-value=0.33 Score=46.84 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=18.5
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.|+|..
T Consensus 5 ~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 5 LLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEESTTSSHHHHHHHHHTTS
T ss_pred EEECCCCCCHHHHHHHHHCCC
Confidence 467889999999999999963
No 334
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=86.15 E-value=0.3 Score=42.46 Aligned_cols=19 Identities=32% Similarity=0.174 Sum_probs=17.1
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|+.|+|||||++.+.+
T Consensus 4 ~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 4 LMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHc
Confidence 4688999999999999987
No 335
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=86.14 E-value=0.29 Score=43.31 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 16 ~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 16 VLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEECCTTSCHHHHHHHHHHC
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 56789999999999999874
No 336
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.14 E-value=0.27 Score=49.23 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.5
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+..||+|+||||+++++++..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5778999999999999999953
No 337
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=86.11 E-value=0.36 Score=43.72 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.||||||+.+.|+..
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3567888999999999999875
No 338
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=86.06 E-value=0.28 Score=43.20 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=17.5
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 18 ~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 18 VFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 56789999999999999863
No 339
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.02 E-value=0.3 Score=45.08 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=18.7
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.|.+..
T Consensus 16 ~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 16 IIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEECSTTSSHHHHHHHHHHSS
T ss_pred EEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999854
No 340
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=86.02 E-value=0.39 Score=43.15 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=17.3
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
...|+.||||||+.+.|+..
T Consensus 5 ~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 5 IVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEECTTSCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45788899999999999874
No 341
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=85.98 E-value=0.34 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|++||||||+.+.|++.
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5678899999999999999974
No 342
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=85.98 E-value=0.38 Score=43.70 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=18.4
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 12 ~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 12 LIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEECSTTSSHHHHHHHHHTCC
T ss_pred EEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999853
No 343
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=85.80 E-value=0.25 Score=45.74 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=18.8
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.|.|..
T Consensus 33 ~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 33 AFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEESCHHHHHHHHHHHTTCS
T ss_pred EEEcCCCCCHHHHHHHHhCCC
Confidence 568899999999999999964
No 344
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.78 E-value=0.32 Score=43.03 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 14 ~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 14 MLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHHhC
Confidence 56789999999999999874
No 345
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=85.76 E-value=0.3 Score=43.59 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 14 ~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 14 LVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 56789999999999999874
No 346
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=85.72 E-value=0.32 Score=47.24 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.|.|.
T Consensus 12 ~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 12 MVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEECTTSSHHHHHHHHSSS
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999885
No 347
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=85.65 E-value=0.32 Score=44.28 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=17.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 12 ~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 12 IILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 56889999999999999884
No 348
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=85.61 E-value=0.31 Score=44.48 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.++|.
T Consensus 27 ~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 27 MLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEECSTTSSHHHHHHHTCCE
T ss_pred EEECCCCCCHHHHHHHHHhc
Confidence 57899999999999999873
No 349
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=85.58 E-value=0.33 Score=44.10 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 18 ~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 18 IMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 56789999999999999874
No 350
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=85.54 E-value=0.37 Score=46.15 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=18.6
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+.+|+.|+|||||++.|.|..
T Consensus 26 ~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 26 ILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEECTTSCHHHHHHHHHTSC
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999853
No 351
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=85.50 E-value=0.3 Score=52.06 Aligned_cols=32 Identities=38% Similarity=0.380 Sum_probs=24.4
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCc
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGY 84 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~ 84 (531)
-+..||+|+|||||+|+|++.... +.+.+++.
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~----~~i~i~g~ 98 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARV----PFITASGS 98 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTC----CEEEEEGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC----CEEEEehh
Confidence 467899999999999999996542 34556553
No 352
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=85.46 E-value=0.43 Score=43.43 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.||||||+.+.|+..
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 3467788999999999999976
No 353
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=85.46 E-value=0.38 Score=43.53 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=17.4
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 30 ~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 30 IIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEECSTTSSHHHHHHHHCC-
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 56789999999999999985
No 354
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=85.31 E-value=0.41 Score=47.43 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.3
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-..+|.+|+|||||++.|.|..
T Consensus 10 V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 10 VAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCc
Confidence 4678999999999999999953
No 355
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=85.30 E-value=0.4 Score=43.73 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=17.4
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 29 ~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 29 LVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEESTTSSHHHHHHHHHC-
T ss_pred EEECcCCCCHHHHHHHHHhC
Confidence 56789999999999999984
No 356
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=85.26 E-value=1 Score=41.39 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=18.5
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 29 ~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 29 LALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEESCTTSSHHHHHHHHHCSC
T ss_pred EEECcCCCCHHHHHHHHhcCC
Confidence 567899999999999999853
No 357
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.20 E-value=0.32 Score=43.87 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=17.6
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 12 ~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 12 VVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEECTTSSHHHHHHHHHHS
T ss_pred EEECCCCCcHHHHHHHHHcC
Confidence 56789999999999999873
No 358
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=85.18 E-value=0.35 Score=43.00 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 22 ~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 22 VVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999874
No 359
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=85.07 E-value=0.36 Score=43.41 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=17.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 26 ~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 26 LLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 56889999999999999884
No 360
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=85.04 E-value=0.34 Score=43.47 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 11 ~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 11 VVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999874
No 361
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=84.96 E-value=0.44 Score=46.00 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=18.5
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.|+|..
T Consensus 9 ~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 9 ALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEECCTTSSHHHHHHHHHTTC
T ss_pred EEECCCCCCHHHHHHHHHCCC
Confidence 568899999999999999953
No 362
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.95 E-value=0.43 Score=42.79 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=18.2
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 20 ~v~G~~~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 20 IIVGLDNAGKTTILYQFSMNE 40 (187)
T ss_dssp EEEESTTSSHHHHHHHHHTTS
T ss_pred EEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999753
No 363
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=84.95 E-value=0.37 Score=43.37 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=17.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 20 ~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 20 LLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 56889999999999999984
No 364
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=84.92 E-value=0.45 Score=42.12 Aligned_cols=21 Identities=29% Similarity=0.143 Sum_probs=17.7
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+..|+.||||||+.+.|+..
T Consensus 5 I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 356788899999999999864
No 365
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=84.88 E-value=0.44 Score=44.06 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=16.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..|+.||||||+.+.|+..
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 4 VLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45788999999999999753
No 366
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=84.84 E-value=0.41 Score=46.57 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=18.4
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|..|+|||||++.|+|..
T Consensus 7 ~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 7 GLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEECTTSSHHHHHHHHHTTC
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999964
No 367
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=84.82 E-value=0.33 Score=43.67 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=18.4
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 25 ~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 25 LCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEECTTSSHHHHHHHTSCGG
T ss_pred EEECCCCCCHHHHHHHHhcCC
Confidence 578899999999999999853
No 368
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=84.69 E-value=0.35 Score=43.72 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 27 ~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 27 CLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEECTTSSHHHHHHHHHHC
T ss_pred EEECcCCCCHHHHHHHHhcC
Confidence 56789999999999999874
No 369
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=84.68 E-value=0.35 Score=44.07 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=17.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 28 ~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 28 VILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCcCHHHHHHHHHhC
Confidence 56889999999999999984
No 370
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=84.67 E-value=0.54 Score=42.51 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=17.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..|+.||||||+.+.|+-.
T Consensus 4 ~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 4 TFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45678899999999999864
No 371
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=84.65 E-value=0.45 Score=44.46 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=18.6
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.|..
T Consensus 33 ~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 33 ILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEECSTTSSHHHHHHHHTTTC
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999853
No 372
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=84.62 E-value=0.38 Score=43.37 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=16.1
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|+.|+|||||++.+.+
T Consensus 24 ~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 24 GIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 4688999999999987665
No 373
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=84.58 E-value=0.4 Score=42.80 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=18.5
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 25 ~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 25 IIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEETTSSHHHHHHHHHTTS
T ss_pred EEECCCCCCHHHHHHHHhcCC
Confidence 568889999999999999854
No 374
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=84.55 E-value=0.39 Score=42.60 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=17.1
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|+.|+|||||++.+.+
T Consensus 9 ~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 9 VVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHc
Confidence 5688999999999999986
No 375
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=84.50 E-value=0.4 Score=43.27 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=17.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 25 ~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 25 IIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEESSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999974
No 376
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=84.45 E-value=0.56 Score=42.18 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=17.7
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+..|+.||||||+.+.|+..
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 456788899999999999753
No 377
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=84.40 E-value=0.56 Score=42.90 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=17.8
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-...|+.||||||+.+.|+..
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 356788899999999999874
No 378
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=84.36 E-value=0.46 Score=42.83 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 21 ~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 21 VMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEECCTTSCHHHHHHHHSCC
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 57889999999999999985
No 379
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=84.32 E-value=0.52 Score=42.75 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=17.3
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 24 ~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 24 VLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEECSTTSSHHHHHHHHHC-
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 56789999999999999984
No 380
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=84.32 E-value=0.55 Score=44.46 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+-...|+.||||||+++.|+...
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 34567888999999999999854
No 381
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=84.32 E-value=0.43 Score=44.17 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=18.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-..+|+.|+|||||++.|++.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3456789999999999999874
No 382
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=84.27 E-value=0.44 Score=46.91 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=18.9
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-..+|+.|||||||++.|+|..
T Consensus 27 I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 27 IVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEcCCCCCHHHHHHHHHCCC
Confidence 3567888999999999999953
No 383
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=84.23 E-value=0.42 Score=42.35 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=18.1
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 12 ~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 12 VTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEECSTTSSHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHhcCC
Confidence 567899999999999998743
No 384
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=84.23 E-value=0.49 Score=43.79 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=17.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..|+.||||||+.+.|+..
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 4 VLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45788999999999999764
No 385
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=84.18 E-value=0.5 Score=43.10 Aligned_cols=22 Identities=18% Similarity=-0.124 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-...|+.||||||+.+.|+...
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 3567888999999999999865
No 386
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=84.11 E-value=0.59 Score=42.67 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4567789999999999999884
No 387
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=84.10 E-value=0.51 Score=41.84 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+..||.|+|||||++.++..
T Consensus 46 ~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 46 PVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 367799999999999999874
No 388
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=84.05 E-value=0.5 Score=48.37 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=0.0
Q ss_pred EEEEcCCCchHHHHHHHHh
Q 042733 49 SGAFRPGGAGKTTLMDVLA 67 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~ 67 (531)
.+.+|++|||||||++.|+
T Consensus 38 ~~i~G~~G~GKs~~~~~~~ 56 (392)
T 4ag6_A 38 WTILAKPGAGKSFTAKMLL 56 (392)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHH
No 389
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=84.02 E-value=0.49 Score=42.93 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=18.3
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.|..
T Consensus 24 ~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 24 LLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEESTTSSHHHHHHHHHSCC
T ss_pred EEECCCCCCHHHHHHHHHhcC
Confidence 467889999999999999954
No 390
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.01 E-value=0.39 Score=43.28 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=18.3
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 27 ~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 27 LIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEESTTSSHHHHHHHHHHHT
T ss_pred EEECCCCcCHHHHHHHHhcCC
Confidence 578899999999999999843
No 391
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=83.96 E-value=0.4 Score=43.80 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 12 ~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 12 LLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEESTTSSHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 56789999999999999874
No 392
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=83.95 E-value=0.48 Score=45.63 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=18.7
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+.+|+.|+|||||++.|.|..
T Consensus 40 ~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 40 LVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEECTTSSHHHHHHHHHTSC
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999954
No 393
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=83.95 E-value=0.5 Score=43.69 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=17.3
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 38 ~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 38 VLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEECTTSSHHHHHHHHHC-
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999984
No 394
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=83.91 E-value=0.43 Score=42.87 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=17.5
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 24 ~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 24 IVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 56789999999999999863
No 395
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.90 E-value=0.43 Score=43.23 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 32 ~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 32 AIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999874
No 396
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=83.86 E-value=0.44 Score=43.36 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=18.3
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 32 ~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 32 VLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEESSTTSSHHHHHHHHHHCC
T ss_pred EEECcCCCCHHHHHHHHHhCC
Confidence 578999999999999998753
No 397
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=83.79 E-value=0.44 Score=42.88 Aligned_cols=20 Identities=30% Similarity=0.321 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 26 ~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 26 TLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 56889999999999999874
No 398
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=83.78 E-value=0.44 Score=42.70 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 19 ~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 19 LIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 56789999999999999884
No 399
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=83.76 E-value=0.54 Score=41.42 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=16.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..|+.||||||+.+.|+..
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 4 YLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEESCTTSCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45678899999999999864
No 400
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=83.75 E-value=2.7 Score=51.77 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCC
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
.++....++.|+|||||+..++..
T Consensus 732 G~lilIaG~PG~GKTtLalqlA~~ 755 (2050)
T 3cmu_A 732 GRIVEIYGPESSGKTTLTLQVIAA 755 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 366777888899999999999873
No 401
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=83.63 E-value=0.42 Score=42.40 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=17.0
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|+.|+|||||++.+.+
T Consensus 10 ~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 10 AILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHc
Confidence 4688999999999999985
No 402
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=83.41 E-value=0.47 Score=42.84 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=17.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 27 ~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 27 VVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHhcC
Confidence 57889999999999999984
No 403
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=83.41 E-value=0.43 Score=48.81 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=18.2
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+.+|+.|+|||||++.|+|.
T Consensus 5 ~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 5 GIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEECCSSSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 67899999999999999984
No 404
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=83.33 E-value=0.51 Score=44.17 Aligned_cols=22 Identities=18% Similarity=0.210 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-...|+.||||||+.+.|+...
T Consensus 10 I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 10 AVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 3567889999999999998643
No 405
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=83.29 E-value=0.53 Score=45.49 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=18.5
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.|.|..
T Consensus 43 ~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 43 LVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEESTTSSHHHHHHHHHTSC
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999953
No 406
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=83.26 E-value=0.67 Score=41.66 Aligned_cols=20 Identities=30% Similarity=0.152 Sum_probs=17.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..|+.||||||+.+.|+..
T Consensus 4 ~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 4 AFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEECSTTSCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45678899999999999863
No 407
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=83.25 E-value=0.62 Score=42.06 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.||||||+.+.|+..
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3456788899999999999864
No 408
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.25 E-value=0.47 Score=43.31 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 24 ~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 24 LLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEECSTTSSHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999874
No 409
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.05 E-value=0.45 Score=43.63 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 29 ~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 29 VVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEECTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHhcC
Confidence 56889999999999999984
No 410
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=83.03 E-value=0.66 Score=45.94 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+.-..+|+.|+|||||++.|.|..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 445678899999999999999953
No 411
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=83.01 E-value=0.39 Score=42.48 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 11 ~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 11 GVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEECCGGGCHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 56889999999999999874
No 412
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=82.95 E-value=0.61 Score=41.88 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=17.8
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+..|+.||||||+.+.|+..
T Consensus 5 I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 456788999999999999864
No 413
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=82.90 E-value=0.5 Score=42.59 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=17.5
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 25 ~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 25 AILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCcHHHHHHHHHhC
Confidence 57889999999999999874
No 414
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=82.89 E-value=0.52 Score=42.71 Aligned_cols=21 Identities=29% Similarity=0.161 Sum_probs=18.2
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 33 ~v~G~~~vGKSsLi~~l~~~~ 53 (192)
T 2b6h_A 33 LMVGLDAAGKTTILYKLKLGE 53 (192)
T ss_dssp EEEESTTSSHHHHHHHHCSSC
T ss_pred EEECCCCCCHHHHHHHHHhCC
Confidence 568899999999999998743
No 415
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=82.86 E-value=0.54 Score=45.76 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=18.9
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-..+|..|+|||||++.|+|..
T Consensus 29 i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEeCCCCCHHHHHHHHHCCC
Confidence 3578889999999999999953
No 416
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=82.80 E-value=0.56 Score=43.68 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=17.4
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
...|+.||||||+.+.|+..
T Consensus 9 ~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 9 MISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp EEEESTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999864
No 417
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=82.78 E-value=0.51 Score=43.34 Aligned_cols=20 Identities=25% Similarity=0.031 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 11 ~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 11 LFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999874
No 418
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=82.72 E-value=0.48 Score=43.59 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=17.5
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 30 ~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 30 VLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHHhC
Confidence 57889999999999998863
No 419
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=82.71 E-value=0.67 Score=41.94 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=18.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.||||||+.+.|+..
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4567788999999999999864
No 420
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=82.68 E-value=0.49 Score=48.09 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+.+|++||||||+.++|++.
T Consensus 27 i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999984
No 421
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=82.54 E-value=0.53 Score=42.78 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=17.4
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|++|+|||||++.+.|
T Consensus 10 ~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 10 VLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 4689999999999999997
No 422
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=82.50 E-value=0.49 Score=43.61 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=18.1
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 32 ~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 32 VVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999984
No 423
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=82.25 E-value=0.72 Score=41.33 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.||||||+.+.|+..
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3466788999999999999864
No 424
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.22 E-value=0.79 Score=42.12 Aligned_cols=43 Identities=9% Similarity=0.118 Sum_probs=29.8
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
.+|.++++||.-. +|+.....+.+.+.+. ..+..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 4578999999765 7887777766666432 12556888888754
No 425
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=82.20 E-value=0.47 Score=46.96 Aligned_cols=23 Identities=30% Similarity=0.108 Sum_probs=20.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
.+-+.+|++|+||||++..|++.
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45667899999999999999985
No 426
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=82.16 E-value=0.42 Score=42.50 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=6.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 12 ~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 12 LLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEECCCCC------------
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 56889999999999999874
No 427
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=82.11 E-value=0.67 Score=42.36 Aligned_cols=22 Identities=36% Similarity=0.302 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.||||||+.+.|+..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3466788899999999999864
No 428
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=82.01 E-value=0.74 Score=42.19 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=17.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.||||||+.+.|+..
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3456778899999999999863
No 429
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=81.86 E-value=0.69 Score=43.01 Aligned_cols=21 Identities=38% Similarity=0.363 Sum_probs=17.7
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-...|+.||||||+.+.|+..
T Consensus 7 I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 356788899999999999864
No 430
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=81.72 E-value=0.55 Score=42.82 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 29 ~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 29 VIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 46789999999999999984
No 431
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=81.67 E-value=0.69 Score=43.30 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=17.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..|+.||||||+.+.|+-.
T Consensus 4 ~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 4 LIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEECCTTSCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45788899999999999754
No 432
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=81.64 E-value=0.58 Score=41.80 Aligned_cols=22 Identities=32% Similarity=0.285 Sum_probs=14.1
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.||||||+.+.|+..
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp EEEEECCC----CHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3456788899999999999864
No 433
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=81.59 E-value=0.56 Score=47.82 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+.+|.+|+|||||++.|+|.
T Consensus 5 I~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 5 CGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp EEEECCTTSSHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 367899999999999999983
No 434
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=81.59 E-value=0.8 Score=44.03 Aligned_cols=21 Identities=29% Similarity=0.124 Sum_probs=17.9
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-...|+.||||||+.+.|+..
T Consensus 7 Ivl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 456788999999999999864
No 435
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=81.35 E-value=0.87 Score=41.54 Aligned_cols=22 Identities=27% Similarity=0.215 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.||||||+.+.|+..
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3466788899999999999864
No 436
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=81.24 E-value=0.69 Score=42.85 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=17.7
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-..+|++|+|||||++.+++.
T Consensus 41 i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 41 FDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 356689999999999999873
No 437
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=80.98 E-value=0.72 Score=42.71 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=16.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..|+.||||||+.+.|+-.
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 4 ILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEESTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45688899999999999763
No 438
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=80.98 E-value=0.63 Score=41.19 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..||.|+|||||++.++..
T Consensus 47 ll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 47 ILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEESCGGGCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999874
No 439
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=80.95 E-value=0.84 Score=41.82 Aligned_cols=21 Identities=24% Similarity=0.003 Sum_probs=17.5
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+..|+.||||||+.+.|+-.
T Consensus 12 I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 456778899999999999863
No 440
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=80.67 E-value=0.62 Score=41.91 Aligned_cols=20 Identities=30% Similarity=0.327 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 22 ~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 22 VVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEECTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 56789999999999999874
No 441
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=80.65 E-value=0.72 Score=48.06 Aligned_cols=23 Identities=35% Similarity=0.143 Sum_probs=19.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
.+-..+|++|+||||++..|++.
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35566799999999999999994
No 442
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=80.21 E-value=0.56 Score=42.04 Aligned_cols=20 Identities=25% Similarity=0.150 Sum_probs=17.4
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 26 ~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 26 LMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEETTSSHHHHHHHTCCS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 56788999999999999764
No 443
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=79.98 E-value=0.92 Score=42.27 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|++|+|||||++.+.|.
T Consensus 41 vlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 41 VLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEECCTTSSHHHHHHHHHCC
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999974
No 444
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=79.79 E-value=0.41 Score=44.16 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.|.+.
T Consensus 15 ~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 15 CLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEECCTTSSHHHHHCBCTTC
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999974
No 445
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=79.72 E-value=1.1 Score=39.45 Aligned_cols=21 Identities=24% Similarity=0.135 Sum_probs=17.6
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+..|+.||||||+.+.|+..
T Consensus 10 i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 10 LVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 356788899999999999864
No 446
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=79.60 E-value=0.7 Score=42.16 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 33 ~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 33 VLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEECTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHhhC
Confidence 56789999999999999874
No 447
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=79.57 E-value=0.41 Score=43.44 Aligned_cols=20 Identities=15% Similarity=0.416 Sum_probs=1.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 24 ~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 24 AVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEC-----------------
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 56788899999999999886
No 448
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=79.55 E-value=0.84 Score=46.50 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=15.7
Q ss_pred EEEcCCCchHHHHHHHH
Q 042733 50 GAFRPGGAGKTTLMDVL 66 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L 66 (531)
+.+|.|||||||++|-+
T Consensus 37 lllG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 37 LLLGAGESGKSTFLKQM 53 (362)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHH
Confidence 57899999999999988
No 449
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=79.55 E-value=0.87 Score=44.09 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-.+.+|..|+|||||+|.|.|..
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTC
T ss_pred heEEeCCCCCCHHHHHHHHhccc
Confidence 45788999999999999999964
No 450
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=79.52 E-value=0.9 Score=43.22 Aligned_cols=21 Identities=24% Similarity=0.050 Sum_probs=17.8
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+..|+.||||||+.+.|+-.
T Consensus 32 I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 466788999999999999853
No 451
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=79.23 E-value=1.1 Score=42.75 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=18.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.||||||+.+.|+..
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4577789999999999999874
No 452
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=79.11 E-value=0.98 Score=40.98 Aligned_cols=42 Identities=21% Similarity=0.146 Sum_probs=28.2
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
.++.++++||. ..+++.....+.+.+... ..+..+|+++..+
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence 46889999995 457777777776666553 2245567777654
No 453
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=79.07 E-value=0.8 Score=42.49 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=17.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 17 ~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 17 VLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEESCTTSSHHHHHHHHHHC
T ss_pred EEECcCCCCHHHHHHHHhcC
Confidence 56889999999999999984
No 454
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=78.71 E-value=1.1 Score=43.65 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=18.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-...|+.||||||+.+.|+..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3456889999999999999863
No 455
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=78.65 E-value=0.85 Score=42.17 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=17.5
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 31 ~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 31 VLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999874
No 456
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=78.23 E-value=0.83 Score=41.79 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=17.5
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 13 ~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 13 VTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 56889999999999999863
No 457
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=78.16 E-value=0.83 Score=41.77 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=17.0
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|+.|+|||||++.+.+
T Consensus 34 ~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 34 VVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHh
Confidence 5688999999999999986
No 458
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=77.80 E-value=1 Score=41.81 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=17.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
...|+.||||||+.+.|+..
T Consensus 9 ~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 9 ILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp EEEECTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45688899999999999864
No 459
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=77.71 E-value=1.3 Score=40.62 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=18.1
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+-||||||+.+.|+..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3466778899999999999864
No 460
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.42 E-value=0.92 Score=45.06 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=30.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
+++++++|| ...|++..+..+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999888888887776432 344666776654
No 461
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=77.16 E-value=1.3 Score=44.77 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+.+|++|+|||||++.|++.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4577889999999999999863
No 462
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=77.13 E-value=1.2 Score=43.36 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=18.0
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G 68 (531)
+-+..|+.||||||+.+.|+.
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 457778889999999999983
No 463
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=76.73 E-value=1.2 Score=41.77 Aligned_cols=20 Identities=40% Similarity=0.395 Sum_probs=17.1
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
...|+.||||||+.+.|+..
T Consensus 20 ~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 20 VLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp EEECCTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45788899999999999864
No 464
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=76.27 E-value=1.4 Score=44.33 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
+-+..||.|||||||.+.|+....
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 567889999999999999998654
No 465
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=76.18 E-value=1.5 Score=41.19 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
|-+.+||.||||+|..+.|+-.
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5578999999999999999864
No 466
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=75.95 E-value=1 Score=42.97 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=17.3
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..||.|+|||||+++|+..
T Consensus 48 ll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 48 LLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCBCSSCSSHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHH
Confidence 45688899999999999984
No 467
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=75.72 E-value=1.7 Score=43.98 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHH---hh--CCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 042733 138 FEQRKRLTVAVEF---VA--NPSIISRDEPISGLDARAATTVIRMVRNT 181 (531)
Q Consensus 138 ~GerqRv~iA~aL---~~--~p~lllLDEPtsgLD~~~~~~i~~~L~~l 181 (531)
.||+||..++++| .. +++++++|||+ ...++.+.+..+
T Consensus 299 ld~~~r~~l~~~l~~l~~~~~~~ililde~~------~~~r~~~~i~~i 341 (365)
T 1lw7_A 299 GSQKQRQQFQQLLKKLLDKYKVPYIEIESPS------YLDRYNQVKAVI 341 (365)
T ss_dssp --CCSHHHHHHHHHHHHHGGGCCCEEEECSS------HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC------HHHHHHHHHHHH
Confidence 3799999999999 76 89999999997 344444444443
No 468
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=75.46 E-value=1.5 Score=37.88 Aligned_cols=41 Identities=5% Similarity=0.039 Sum_probs=29.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
+..+|++||.- .|++..+..+.+.+... ..+..+|++|..+
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~ 116 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTS 116 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSC
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcC
Confidence 55799999984 68888888888887322 2245677777764
No 469
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=75.44 E-value=1.3 Score=45.68 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=17.6
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+.+|..|+|||||++.|+|.
T Consensus 4 ~ivG~pnvGKSTL~n~L~~~ 23 (397)
T 1wxq_A 4 GVVGKPNVGKSTFFSAATLV 23 (397)
T ss_dssp EEEECTTSSHHHHHHHHHC-
T ss_pred EEECCCCCCHHHHHHHHHCC
Confidence 56888999999999999995
No 470
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=75.28 E-value=0.91 Score=44.65 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=15.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+.-|+.||||||+.+.|+..
T Consensus 7 iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4566788999999999999863
No 471
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=75.24 E-value=1.3 Score=44.88 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=16.2
Q ss_pred EEEcCCCchHHHHHHHHh
Q 042733 50 GAFRPGGAGKTTLMDVLA 67 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~ 67 (531)
+.+|.|||||||++|-+-
T Consensus 13 lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 13 LLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHH
Confidence 678999999999999885
No 472
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=74.69 E-value=1.8 Score=40.25 Aligned_cols=20 Identities=40% Similarity=0.393 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+.+||.||||+|..+.|+-.
T Consensus 4 il~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 4 VFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999874
No 473
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=76.48 E-value=0.63 Score=42.36 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=17.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 34 ~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 34 VVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 46788899999999999863
No 474
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=73.95 E-value=1.6 Score=43.07 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=17.6
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 7 ~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 7 LLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEECCTTSSHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 46889999999999998875
No 475
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=73.93 E-value=1.5 Score=42.81 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.4
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.+.+|..|+|||||+|.|.|..
T Consensus 123 v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 123 ALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEecCCCchHHHHHHHhcCc
Confidence 4678899999999999999964
No 476
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=73.73 E-value=1.6 Score=41.86 Aligned_cols=20 Identities=30% Similarity=0.238 Sum_probs=17.5
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..||.|+|||||.+.++..
T Consensus 68 Ll~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 68 LLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHH
Confidence 45689999999999999874
No 477
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=73.39 E-value=3.4 Score=42.16 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+.+|...+|||||+|.|+|.
T Consensus 76 ~ivG~PNvGKSTL~n~Lt~~ 95 (376)
T 4a9a_A 76 GFVGFPSVGKSTLLSKLTGT 95 (376)
T ss_dssp EEECCCCHHHHHHHHHHHSB
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 67788899999999999994
No 478
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=73.09 E-value=1.6 Score=42.84 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+..||.|+|||+|.++|+...
T Consensus 40 Ll~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 40 GIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp EEEECTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 455999999999999999743
No 479
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=72.96 E-value=1.2 Score=44.98 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-..+|..|+|||||++.|+|.
T Consensus 34 I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 34 IAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp EEEECBTTSSHHHHHHTTTTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 357888999999999999995
No 480
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=72.58 E-value=2 Score=42.95 Aligned_cols=24 Identities=38% Similarity=0.344 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
+-..+||.|||||||.+.|+....
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 456789999999999999998654
No 481
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=72.21 E-value=1.9 Score=44.57 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=20.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.+-..+|+.||||||+.+.|+...
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc
Confidence 456788999999999999998643
No 482
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=72.14 E-value=1.8 Score=44.42 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=18.2
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+.+|+.|+|||||++.|+|.
T Consensus 12 ~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 12 GVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp EEECSTTSSHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHhCc
Confidence 57889999999999999994
No 483
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=71.84 E-value=1.7 Score=42.26 Aligned_cols=21 Identities=33% Similarity=0.287 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+..||.|+|||||.+.++..
T Consensus 70 vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 70 MSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 367789999999999998874
No 484
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=71.82 E-value=1.5 Score=40.63 Aligned_cols=18 Identities=39% Similarity=0.625 Sum_probs=14.6
Q ss_pred cCCCchHHHHHHHHhCCC
Q 042733 53 RPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 53 ~~gGaGKTTLLk~L~G~~ 70 (531)
|+-||||||+.+.|+...
T Consensus 9 G~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 9 GPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CCTTSCHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHH
Confidence 444999999999998743
No 485
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=71.77 E-value=1.1 Score=41.42 Aligned_cols=19 Identities=42% Similarity=0.629 Sum_probs=16.2
Q ss_pred EEEcCCCchHHHHHHH-HhC
Q 042733 50 GAFRPGGAGKTTLMDV-LAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~-L~G 68 (531)
..+|+.|+|||||++. +.|
T Consensus 19 ~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 19 VLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEECTTSSHHHHHTTBHHH
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 4688999999999999 555
No 486
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=71.44 E-value=1.9 Score=41.71 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+..||.|+|||||.+.++...
T Consensus 54 ll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 54 LMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 466899999999999998753
No 487
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=71.11 E-value=2.1 Score=39.46 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+..|+.||||||+.+.|+...
T Consensus 6 i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 6 IALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 4567888999999999998754
No 488
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=70.92 E-value=0.48 Score=43.08 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=18.2
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.|.+..
T Consensus 37 ~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 37 LLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEECCTTSCCTTTTTSSBCCC
T ss_pred EEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999853
No 489
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=70.80 E-value=2.1 Score=40.64 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
|.+|+.||||||+.+.|+-.
T Consensus 12 ~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 12 ILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp EEECCTTSCHHHHHHHHHHH
T ss_pred eeECCCCCCHHHHHHHHHHH
Confidence 67889999999999999763
No 490
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=70.64 E-value=2.4 Score=42.29 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
+-...||.|||||||.+.|+-...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhCc
Confidence 456789999999999999997654
No 491
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=70.55 E-value=7.7 Score=36.80 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=47.8
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecC---------CchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQ---------PSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~---------~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
.+.+++++||----.| +.+.++.+++.|+.||++-++ +..++...+|.|.-|.. .+..+|..
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelka--IC~~Cg~~ 159 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTA--VCMECFRE 159 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECCE--ECTTTCSE
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeeee--EecCcCCc
Confidence 6789999999977644 556666666689999999999 88888899999998853 33345653
No 492
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=70.33 E-value=1.9 Score=46.45 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.-..+|..|+|||||+|.|.|..
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 45678888999999999999954
No 493
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=70.32 E-value=1.8 Score=39.87 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=14.1
Q ss_pred cCCCchHHHHHHHHhCC
Q 042733 53 RPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 53 ~~gGaGKTTLLk~L~G~ 69 (531)
|.-||||||.++.|+-.
T Consensus 7 G~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 7 GIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp CSTTSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 34499999999999874
No 494
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=69.95 E-value=2.2 Score=45.63 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=17.4
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+.+|..|+|||||++.++|..
T Consensus 45 ~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 45 HLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp EEESSSCSSHHHHHHHHHC--
T ss_pred EEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999853
No 495
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=69.93 E-value=1.8 Score=40.41 Aligned_cols=19 Identities=53% Similarity=0.574 Sum_probs=15.7
Q ss_pred EEcCCCchHHHHHHHHhCC
Q 042733 51 AFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 51 ~i~~gGaGKTTLLk~L~G~ 69 (531)
.-|+.||||||+.+.|+..
T Consensus 11 ~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 11 LEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 3467799999999999774
No 496
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=69.93 E-value=2.6 Score=41.46 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.+-...||.|+|||||++.+....
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc
Confidence 466788999999999999998643
No 497
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=69.75 E-value=2.1 Score=42.83 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=14.5
Q ss_pred EEEcCCCchHHHHHHHH
Q 042733 50 GAFRPGGAGKTTLMDVL 66 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L 66 (531)
+.+|.|+|||||++|-+
T Consensus 11 LlLG~geSGKSTi~KQm 27 (327)
T 3ohm_A 11 LLLGTGESGKSTFIKQM 27 (327)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEEcCCCccHHHHHHHH
Confidence 57899999999998655
No 498
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=69.74 E-value=1.7 Score=45.79 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||+|.|+|.
T Consensus 228 ~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 228 AIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEECTTSSHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHhCC
Confidence 56889999999999999984
No 499
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=69.65 E-value=2.1 Score=40.26 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=15.8
Q ss_pred EcCCCchHHHHHHHHhCCC
Q 042733 52 FRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 52 i~~gGaGKTTLLk~L~G~~ 70 (531)
-|+-||||||+.+.|+...
T Consensus 8 ~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 8 EGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EECTTSSHHHHHHHHHHHC
T ss_pred EcCCCCCHHHHHHHHHHHc
Confidence 3556999999999999754
No 500
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=69.63 E-value=2 Score=43.04 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
.-+..||.|+|||||++.++..
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4567799999999999999874
Done!