BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042735
(667 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 104/313 (33%), Positives = 157/313 (50%), Gaps = 26/313 (8%)
Query: 2 LTNLRELHLRDNYLTGLIPT-ETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L +L+ L L +N TG IP + +L L L GN F G++P G+ S L L L
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 61 NNLSGSIPPSVGNLM--LTVLALENNHFTGNLRHNICR-NGALERVIVGGNHFRGPIPKC 117
NN SG +P M L VL L N F+G L ++ + +L + + N+F GPI
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI--- 384
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNV 177
PNL + N + T+ E + + +N F G+I C +L +L++
Sbjct: 385 ---LPNLCQ------NPKNTLQELY----------LQNNGFTGKIPPTLSNCSELVSLHL 425
Query: 178 SMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSE 237
S N ++ +IP +G+LS L + L LN + G+IP+E + +L LIL N L G +PS
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Query: 238 IGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELEL 297
+ + T L +++LS NR + IP+ +G L L L LS F +P ELG L L+L
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545
Query: 298 SHNFLGREIPSQI 310
+ N IP+ +
Sbjct: 546 NTNLFNGTIPAAM 558
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 146/312 (46%), Gaps = 8/312 (2%)
Query: 5 LRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLS 64
L+ L + N L+G L L + NQF G +P L SL+YL L EN +
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFT 282
Query: 65 GSIPPSVGNL--MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIP-KCLRNC 121
G IP + LT L L NHF G + LE + + N+F G +P L
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342
Query: 122 PNLVRISLEGNNMRGTISEAF-GIYLNLTFLDISDNNFFGEIASNWGKCPK--LSTLNVS 178
L + L N G + E+ + +L LD+S NNF G I N + PK L L +
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402
Query: 179 MNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI 238
N T IP + N S L LS N++ G IP G L+ L L L N L G +P E+
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 239 GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELS 298
+ LE L L N + IP L N L+++ LS + E+PK +G+L L+ L+LS
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522
Query: 299 HNFLGREIPSQI 310
+N IP+++
Sbjct: 523 NNSFSGNIPAEL 534
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 103/335 (30%), Positives = 146/335 (43%), Gaps = 53/335 (15%)
Query: 5 LRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLS 64
L+EL+L++N TG IP N LV L L N G++PSS+G+LS LR L L+ N L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 65 GSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNL 124
G IP + LE +I+ N G IP L NC NL
Sbjct: 456 GEIP-----------------------QELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 125 VRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITR 184
ISL N + G I + G NL L +S+N+F G I + G C L L+++ N
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 185 SIPLEIGNLSTLNEFDLSLNHIVGK---------IPKE-FGKLNSLTKLILRGNQL---- 230
+IP + S ++ N I GK + KE G N L +R QL
Sbjct: 553 TIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608
Query: 231 ------------IGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQF 278
GH + + FL++S N S IP+ +G++ L L+L
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Query: 279 IQELPKELGKLVQLSELELSHNFLGREIPSQICSM 313
+P E+G L L+ L+LS N L IP + ++
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 143/308 (46%), Gaps = 3/308 (0%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
N + L LHL NYL+G IP+ +L L L L N G +P + + +L L L
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 61 NNLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N+L+G IP + N L ++L NN TG + I R L + + N F G IP L
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
+C +L+ + L N GTI A + + I ++ K N+
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
RS ++ LST N +++ G F S+ L + N L G++P EIG
Sbjct: 596 FQGIRSE--QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSH 299
S+ L LNL N S IP+ +G+L L+ LDLS + +P+ + L L+E++LS+
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 300 NFLGREIP 307
N L IP
Sbjct: 714 NNLSGPIP 721
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 133/297 (44%), Gaps = 51/297 (17%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
L+ LR+L L N L G IP E +K+L L L N G +PS + N ++L ++ L N
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500
Query: 62 NLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCL-- 118
L+G IP +G L L +L L NN F+GN+ + +L + + N F G IP +
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Query: 119 ---RNCPNLVR----ISLEGNNMR------------------------------------ 135
+ N + + ++ + M+
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620
Query: 136 -GTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLS 194
G S F ++ FLD+S N G I G P L LN+ N+I+ SIP E+G+L
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680
Query: 195 TLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKL---EFLN 248
LN DLS N + G+IP+ L LT++ L N L G +P E+G +FLN
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLN 736
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 141/342 (41%), Gaps = 46/342 (13%)
Query: 57 FLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRH-------------NICRN------ 97
FL ++++GS+ + LT L L N +G + N+ N
Sbjct: 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 98 --------GALERVIVGGNHFRGP--IPKCLRN-CPNLVRISLEGNNMRGTISEAFGIYL 146
+LE + + N G + L + C L +++ GN + G + + +
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV-- 200
Query: 147 NLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHI 206
NL FLD+S NNF I G C L L++S N ++ I + L ++S N
Sbjct: 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 207 VGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNL 265
VG IP L SL L L N+ G +P + G+ L L+LS N F +P G+
Sbjct: 260 VGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317
Query: 266 LKLHYLDLSKYQFIQELPKE-LGKLVQLSELELSHNFLGREIPSQICSMECCEVFCTITN 324
L L LS F ELP + L K+ L L+LS N E+P + ++ +T
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA----SLLTL 373
Query: 325 SVPTNNFLNCQKGYACQKVVLTFQQF-----STSAKICPNLS 361
+ +NNF CQ T Q+ + KI P LS
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/313 (33%), Positives = 157/313 (50%), Gaps = 26/313 (8%)
Query: 2 LTNLRELHLRDNYLTGLIPT-ETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L +L+ L L +N TG IP + +L L L GN F G++P G+ S L L L
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 61 NNLSGSIPPSVGNLM--LTVLALENNHFTGNLRHNICR-NGALERVIVGGNHFRGPIPKC 117
NN SG +P M L VL L N F+G L ++ + +L + + N+F GPI
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI--- 381
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNV 177
PNL + N + T+ E + + +N F G+I C +L +L++
Sbjct: 382 ---LPNLCQ------NPKNTLQELY----------LQNNGFTGKIPPTLSNCSELVSLHL 422
Query: 178 SMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSE 237
S N ++ +IP +G+LS L + L LN + G+IP+E + +L LIL N L G +PS
Sbjct: 423 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Query: 238 IGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELEL 297
+ + T L +++LS NR + IP+ +G L L L LS F +P ELG L L+L
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 542
Query: 298 SHNFLGREIPSQI 310
+ N IP+ +
Sbjct: 543 NTNLFNGTIPAAM 555
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 146/312 (46%), Gaps = 8/312 (2%)
Query: 5 LRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLS 64
L+ L + N L+G L L + NQF G +P L SL+YL L EN +
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFT 279
Query: 65 GSIPPSVGNL--MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIP-KCLRNC 121
G IP + LT L L NHF G + LE + + N+F G +P L
Sbjct: 280 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 339
Query: 122 PNLVRISLEGNNMRGTISEAF-GIYLNLTFLDISDNNFFGEIASNWGKCPK--LSTLNVS 178
L + L N G + E+ + +L LD+S NNF G I N + PK L L +
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 399
Query: 179 MNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI 238
N T IP + N S L LS N++ G IP G L+ L L L N L G +P E+
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 239 GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELS 298
+ LE L L N + IP L N L+++ LS + E+PK +G+L L+ L+LS
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Query: 299 HNFLGREIPSQI 310
+N IP+++
Sbjct: 520 NNSFSGNIPAEL 531
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 103/335 (30%), Positives = 146/335 (43%), Gaps = 53/335 (15%)
Query: 5 LRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLS 64
L+EL+L++N TG IP N LV L L N G++PSS+G+LS LR L L+ N L
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 65 GSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNL 124
G IP + LE +I+ N G IP L NC NL
Sbjct: 453 GEIP-----------------------QELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 125 VRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITR 184
ISL N + G I + G NL L +S+N+F G I + G C L L+++ N
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 549
Query: 185 SIPLEIGNLSTLNEFDLSLNHIVGK---------IPKE-FGKLNSLTKLILRGNQL---- 230
+IP + S ++ N I GK + KE G N L +R QL
Sbjct: 550 TIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 605
Query: 231 ------------IGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQF 278
GH + + FL++S N S IP+ +G++ L L+L
Sbjct: 606 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 665
Query: 279 IQELPKELGKLVQLSELELSHNFLGREIPSQICSM 313
+P E+G L L+ L+LS N L IP + ++
Sbjct: 666 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 143/308 (46%), Gaps = 3/308 (0%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
N + L LHL NYL+G IP+ +L L L L N G +P + + +L L L
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 472
Query: 61 NNLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N+L+G IP + N L ++L NN TG + I R L + + N F G IP L
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
+C +L+ + L N GTI A + + I ++ K N+
Sbjct: 533 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 592
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
RS ++ LST N +++ G F S+ L + N L G++P EIG
Sbjct: 593 FQGIRSE--QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 650
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSH 299
S+ L LNL N S IP+ +G+L L+ LDLS + +P+ + L L+E++LS+
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 710
Query: 300 NFLGREIP 307
N L IP
Sbjct: 711 NNLSGPIP 718
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 133/297 (44%), Gaps = 51/297 (17%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
L+ LR+L L N L G IP E +K+L L L N G +PS + N ++L ++ L N
Sbjct: 438 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 497
Query: 62 NLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCL-- 118
L+G IP +G L L +L L NN F+GN+ + +L + + N F G IP +
Sbjct: 498 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
Query: 119 ---RNCPNLVR----ISLEGNNMR------------------------------------ 135
+ N + + ++ + M+
Sbjct: 558 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 617
Query: 136 -GTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLS 194
G S F ++ FLD+S N G I G P L LN+ N+I+ SIP E+G+L
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 677
Query: 195 TLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKL---EFLN 248
LN DLS N + G+IP+ L LT++ L N L G +P E+G +FLN
Sbjct: 678 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLN 733
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 141/342 (41%), Gaps = 46/342 (13%)
Query: 57 FLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRH-------------NICRN------ 97
FL ++++GS+ + LT L L N +G + N+ N
Sbjct: 80 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 98 --------GALERVIVGGNHFRGP--IPKCLRN-CPNLVRISLEGNNMRGTISEAFGIYL 146
+LE + + N G + L + C L +++ GN + G + + +
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV-- 197
Query: 147 NLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHI 206
NL FLD+S NNF I G C L L++S N ++ I + L ++S N
Sbjct: 198 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 207 VGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNL 265
VG IP L SL L L N+ G +P + G+ L L+LS N F +P G+
Sbjct: 257 VGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 314
Query: 266 LKLHYLDLSKYQFIQELPKE-LGKLVQLSELELSHNFLGREIPSQICSMECCEVFCTITN 324
L L LS F ELP + L K+ L L+LS N E+P + ++ +T
Sbjct: 315 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA----SLLTL 370
Query: 325 SVPTNNFLNCQKGYACQKVVLTFQQF-----STSAKICPNLS 361
+ +NNF CQ T Q+ + KI P LS
Sbjct: 371 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 127/295 (43%), Gaps = 56/295 (18%)
Query: 410 KFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFF 469
+F E+ A ++F K +G G G VY+ L +AVK+ + +F
Sbjct: 27 RFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQ---GGELQFQ 83
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN--------------- 514
E+E ++ HRN+++ GFC +L+Y Y+ GS+A+ L
Sbjct: 84 TEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQR 143
Query: 515 ----------------DAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLK-PDSSNWSAL 557
D D+ + N+LLD E +A V DFG+AK + D A+
Sbjct: 144 IALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAV 203
Query: 558 VGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM----- 606
GT ++AP+Y +K DV+ + V+ LE+I G+ R F + L + + +
Sbjct: 204 RGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQ--RAFDLARLANDDDVMLLDWVK 261
Query: 607 ------RLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+L+ ++D L D + + +++VA C SP RP M + + L
Sbjct: 262 GLLKEKKLEALVDVDLQGNYKDEE--VEQLIQVALLCTQSSPMERPKMSEVVRML 314
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 126/295 (42%), Gaps = 56/295 (18%)
Query: 410 KFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFF 469
+F E+ A ++F K +G G G VY+ L +AVK+ + +F
Sbjct: 19 RFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQ---GGELQFQ 75
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN--------------- 514
E+E ++ HRN+++ GFC +L+Y Y+ GS+A+ L
Sbjct: 76 TEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQR 135
Query: 515 ----------------DAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLK-PDSSNWSAL 557
D D+ + N+LLD E +A V DFG+AK + D A+
Sbjct: 136 IALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAV 195
Query: 558 VGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM----- 606
G ++AP+Y +K DV+ + V+ LE+I G+ R F + L + + +
Sbjct: 196 RGXIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQ--RAFDLARLANDDDVMLLDWVK 253
Query: 607 ------RLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+L+ ++D L D + + +++VA C SP RP M + + L
Sbjct: 254 GLLKEKKLEALVDVDLQGNYKDEE--VEQLIQVALLCTQSSPMERPKMSEVVRML 306
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 136/290 (46%), Gaps = 51/290 (17%)
Query: 414 VEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIE 473
V++ A N+FD K+ IG G G VY+ L +A+K+ +P S I + + EIE
Sbjct: 32 VDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR-RTPESSQGIEEFE---TEIE 87
Query: 474 ALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSND-----------------A 516
L+ RH ++V GFC ILIY+Y++ G+L +L
Sbjct: 88 TLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIG 147
Query: 517 AAEEL-----------DISSKNVLLDLEHKAHVSDFGIA-KFLKPDSSNWSALV-GTYRY 563
AA L D+ S N+LLD ++DFGI+ K + D ++ +V GT Y
Sbjct: 148 AARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVVKGTLGY 207
Query: 564 VAPDY------RKKCDVYSFRVLALEVIKGKH------PRGFVS-SILPSPSVINMRLDE 610
+ P+Y +K DVYSF V+ EV+ + PR V+ + S N +L++
Sbjct: 208 IDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQ 267
Query: 611 MLDPRLPPP-SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659
++DP L P+ L + A CL +S E RP+M + +L ++L
Sbjct: 268 IVDPNLADKIRPE---SLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYAL 314
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 135/290 (46%), Gaps = 51/290 (17%)
Query: 414 VEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIE 473
V++ A N+FD K+ IG G G VY+ L +A+K+ +P S I + + EIE
Sbjct: 32 VDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR-RTPESSQGIEEFE---TEIE 87
Query: 474 ALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSND-----------------A 516
L+ RH ++V GFC ILIY+Y++ G+L +L
Sbjct: 88 TLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIG 147
Query: 517 AAEEL-----------DISSKNVLLDLEHKAHVSDFGIA-KFLKPDSSNWSALV-GTYRY 563
AA L D+ S N+LLD ++DFGI+ K + ++ +V GT Y
Sbjct: 148 AARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVVKGTLGY 207
Query: 564 VAPDY------RKKCDVYSFRVLALEVIKGKH------PRGFVS-SILPSPSVINMRLDE 610
+ P+Y +K DVYSF V+ EV+ + PR V+ + S N +L++
Sbjct: 208 IDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQ 267
Query: 611 MLDPRLPPP-SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659
++DP L P+ L + A CL +S E RP+M + +L ++L
Sbjct: 268 IVDPNLADKIRPE---SLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYAL 314
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 127/289 (43%), Gaps = 54/289 (18%)
Query: 405 LSFKGKFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIAD 464
L F+G D ++ D + K IG+G G+V+RAE + +AVK + D A+
Sbjct: 21 LYFQGAMDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEWHGSD-VAVKIL---MEQDFHAE 76
Query: 465 Q-KEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELD- 522
+ EF E+ + ++RH NIV F G + + ++ EYL RGSL L A E+LD
Sbjct: 77 RVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDE 136
Query: 523 ----------------------------ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554
+ S N+L+D ++ V DFG+++ +
Sbjct: 137 RRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSS 196
Query: 555 SALVGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV--INM 606
+ GT ++AP+ +K DVYSF V+ E+ + P G ++ P+ V +
Sbjct: 197 KSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWG---NLNPAQVVAAVGF 253
Query: 607 RLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ + PR ++ ++ +I+E C P RP+ TI L
Sbjct: 254 KCKRLEIPR------NLNPQVAAIIE---GCWTNEPWKRPSFATIMDLL 293
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 123/293 (41%), Gaps = 53/293 (18%)
Query: 411 FDYVEIIRAINDFDAKYC------IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIAD 464
F + E+ N+FD + +G G G VY+ + + +AVKK + +
Sbjct: 15 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 73
Query: 465 QKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLS----------- 513
+++F EI+ + K +H N+V+ GF S L+Y Y+ GSL LS
Sbjct: 74 KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWH 133
Query: 514 -----NDAAAEEL-----------DISSKNVLLDLEHKAHVSDFGIAKFLK--PDSSNWS 555
AA + DI S N+LLD A +SDFG+A+ + + S
Sbjct: 134 MRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXS 193
Query: 556 ALVGTYRYVAPDYRK-----KCDVYSFRVLALEVIKG-------KHPRGFVSSILPSPSV 603
+VGT Y+AP+ + K D+YSF V+ LE+I G + P+ +
Sbjct: 194 RIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDE 253
Query: 604 INMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656
D + S V+ ++ VA CL RP ++ + QQLL
Sbjct: 254 EKTIEDYIDKKMNDADSTSVE----AMYSVASQCLHEKKNKRPDIKKV-QQLL 301
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 125/289 (43%), Gaps = 54/289 (18%)
Query: 405 LSFKGKFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIAD 464
L F+G D ++ D + K IG+G G+V+RAE + +AVK + D A+
Sbjct: 21 LYFQGAMDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEWHGSD-VAVKIL---MEQDFHAE 76
Query: 465 Q-KEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-- 521
+ EF E+ + ++RH NIV F G + + ++ EYL RGSL L A E+L
Sbjct: 77 RVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDE 136
Query: 522 ---------------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554
D+ S N+L+D ++ V DFG+++
Sbjct: 137 RRRLSMAYDVAKGMNYLHNRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKASXFLXS 196
Query: 555 SALVGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV--INM 606
GT ++AP+ +K DVYSF V+ E+ + P G ++ P+ V +
Sbjct: 197 KXAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWG---NLNPAQVVAAVGF 253
Query: 607 RLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ + PR ++ ++ +I+E C P RP+ TI L
Sbjct: 254 KCKRLEIPR------NLNPQVAAIIE---GCWTNEPWKRPSFATIMDLL 293
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 122/293 (41%), Gaps = 53/293 (18%)
Query: 411 FDYVEIIRAINDFDAKYC------IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIAD 464
F + E+ N+FD + +G G G VY+ + + +AVKK + +
Sbjct: 15 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 73
Query: 465 QKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLS----------- 513
+++F EI+ + K +H N+V+ GF S L+Y Y+ GSL LS
Sbjct: 74 KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWH 133
Query: 514 -----NDAAAEEL-----------DISSKNVLLDLEHKAHVSDFGIAKFLK--PDSSNWS 555
AA + DI S N+LLD A +SDFG+A+ + +
Sbjct: 134 MRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXX 193
Query: 556 ALVGTYRYVAPDYRK-----KCDVYSFRVLALEVIKG-------KHPRGFVSSILPSPSV 603
+VGT Y+AP+ + K D+YSF V+ LE+I G + P+ +
Sbjct: 194 RIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDE 253
Query: 604 INMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656
D + S V+ ++ VA CL RP ++ + QQLL
Sbjct: 254 EKTIEDYIDKKMNDADSTSVE----AMYSVASQCLHEKKNKRPDIKKV-QQLL 301
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 122/293 (41%), Gaps = 53/293 (18%)
Query: 411 FDYVEIIRAINDFDAKYC------IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIAD 464
F + E+ N+FD + +G G G VY+ + + +AVKK + +
Sbjct: 9 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 67
Query: 465 QKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLS----------- 513
+++F EI+ + K +H N+V+ GF S L+Y Y+ GSL LS
Sbjct: 68 KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWH 127
Query: 514 -----NDAAAEEL-----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WS 555
AA + DI S N+LLD A +SDFG+A+ + +
Sbjct: 128 MRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVMXX 187
Query: 556 ALVGTYRYVAPDYRK-----KCDVYSFRVLALEVIKG-------KHPRGFVSSILPSPSV 603
+VGT Y+AP+ + K D+YSF V+ LE+I G + P+ +
Sbjct: 188 RIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDE 247
Query: 604 INMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656
D + S V+ ++ VA CL RP ++ + QQLL
Sbjct: 248 EKTIEDYIDKKMNDADSTSVE----AMYSVASQCLHEKKNKRPDIKKV-QQLL 295
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 122/243 (50%), Gaps = 21/243 (8%)
Query: 43 LPSSVGNLSSLRYLFLFE-NNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGAL 100
+PSS+ NL L +L++ NNL G IPP++ L L L + + + +G + + + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 101 ERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNL-TFLDISDNNFF 159
+ N G +P + + PNLV I+ +GN + G I +++G + L T + IS N
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 160 GEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHI---VGKIPKEFGK 216
G+I P + LN++ +++R++ LE G+ S L D + I + + GK
Sbjct: 188 GKIP------PTFANLNLAFVDLSRNM-LE-GDASVLFGSDKNTQKIHLAKNSLAFDLGK 239
Query: 217 LN---SLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDL 273
+ +L L LR N++ G LP + L L LN+S N IP+ GNL + D+
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQR---FDV 295
Query: 274 SKY 276
S Y
Sbjct: 296 SAY 298
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 8/203 (3%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
LT L L++ ++G IP +K+LV L N G+LP S+ +L +L + N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 62 NLSGSIPPSVGNL--MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
+SG+IP S G+ + T + + N TG + N L V + N G
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NLNLAFVDLSRNMLEGDASVLFG 218
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
+ N +I L N++ + + G+ NL LD+ +N +G + + L +LNVS
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKV-GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 180 NNITRSIPLEIGNLSTLNEFDLS 202
NN+ IP + GNL FD+S
Sbjct: 278 NNLCGEIP-QGGNLQ---RFDVS 296
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 3/163 (1%)
Query: 145 YLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLN 204
YLN ++ NN G I K +L L ++ N++ +IP + + TL D S N
Sbjct: 77 YLNFLYIG-GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135
Query: 205 HIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKL-EFLNLSTNRFSSLIPESLG 263
+ G +P L +L + GN++ G +P GS +KL + +S NR + IP +
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195
Query: 264 NLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREI 306
N L L ++DLS+ + G ++ L+ N L ++
Sbjct: 196 N-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 92/210 (43%), Gaps = 4/210 (1%)
Query: 100 LERVIVGG-NHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNF 158
L + +GG N+ GPIP + L + + N+ G I + L LD S N
Sbjct: 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137
Query: 159 FGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTL-NEFDLSLNHIVGKIPKEFGKL 217
G + + P L + N I+ +IP G+ S L +S N + GKIP F L
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197
Query: 218 NSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQ 277
N L + L N L G GS + ++L+ N + + + +G L+ LDL +
Sbjct: 198 N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR 255
Query: 278 FIQELPKELGKLVQLSELELSHNFLGREIP 307
LP+ L +L L L +S N L EIP
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 27/242 (11%)
Query: 13 NYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVG 72
N L G IP L L L + G++P + + +L L N LSG++PPS+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 73 NLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNL-VRISLEG 131
+L L + GN G IP + L +++
Sbjct: 147 SLP-----------------------NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 132 NNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIG 191
N + G I F LNL F+D+S N G+ + +G ++++ N++ + ++G
Sbjct: 184 NRLTGKIPPTFA-NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVG 241
Query: 192 NLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLST 251
LN DL N I G +P+ +L L L + N L G +P + G+L + + +
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYAN 300
Query: 252 NR 253
N+
Sbjct: 301 NK 302
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 162 IASNWGKCPKLSTLNVS-MNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSL 220
I S+ P L+ L + +NN+ IP I L+ L+ ++ ++ G IP ++ +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 221 TKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHY-LDLSKYQFI 279
L N L G LP I SL L + NR S IP+S G+ KL + +S+ +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 280 QELPKELGKLVQLSELELSHNFL 302
++P L L+ ++LS N L
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNML 209
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Query: 210 IPKEFGKLNSLTKLILRG-NQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKL 268
IP L L L + G N L+G +P I LT+L +L ++ S IP+ L + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 269 HYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSMECCEVFCTIT 323
LD S LP + L L + N + IP S ++F ++T
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS--KLFTSMT 180
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 111/258 (43%), Gaps = 53/258 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+GSG+ G V + + +AVK S+ EFF E + + K+ H +VKFYG
Sbjct: 16 LGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSED-----EFFQEAQTMMKLSHPKLVKFYG 70
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDAAAEE-------------------------LDI 523
CS ++ EY+ G L L + E D+
Sbjct: 71 VCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDL 130
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCDV 574
+++N L+D + VSDFG+ +++ D + + VGT ++ AP+ Y K DV
Sbjct: 131 AARNCLVDRDLCVKVSDFGMTRYVLDD--QYVSSVGTKFPVKWSAPEVFHYFKYSSKSDV 188
Query: 575 YSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEV 633
++F +L EV GK P L + S + +++ + P + D +I ++
Sbjct: 189 WAFGILMWEVFSLGKMPYD-----LYTNSEVVLKVSQGHRLYRPHLASD------TIYQI 237
Query: 634 AFSCLDVSPESRPTMQTI 651
+SC PE RPT Q +
Sbjct: 238 MYSCWHELPEKRPTFQQL 255
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 117/293 (39%), Gaps = 53/293 (18%)
Query: 411 FDYVEIIRAINDFDAKYC------IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIAD 464
F + E+ N+FD + G G G VY+ + + +AVKK + +
Sbjct: 6 FSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 64
Query: 465 QKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLS----------- 513
+++F EI+ K +H N+V+ GF S L+Y Y GSL LS
Sbjct: 65 KQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLSCLDGTPPLSWH 124
Query: 514 -----NDAAAEEL-----------DISSKNVLLDLEHKAHVSDFGIAKFLK--PDSSNWS 555
AA + DI S N+LLD A +SDFG+A+ + S
Sbjct: 125 XRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVXXS 184
Query: 556 ALVGTYRYVAPDYRK-----KCDVYSFRVLALEVIKG-------KHPRGFVSSILPSPSV 603
+VGT Y AP+ + K D+YSF V+ LE+I G + P+ +
Sbjct: 185 RIVGTTAYXAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDE 244
Query: 604 INMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656
D + S V+ + VA CL RP ++ + QQLL
Sbjct: 245 EKTIEDYIDKKXNDADSTSVE----AXYSVASQCLHEKKNKRPDIKKV-QQLL 292
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 118/266 (44%), Gaps = 53/266 (19%)
Query: 423 FDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
FD +G G +GSVY+A + + +A+K+ P+ SD +E EI + +
Sbjct: 31 FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQV--PVESDL----QEIIKEISIMQQCDSP 84
Query: 482 NIVKFYGFCSHARHSILIYEYLKRGSLA-------TNLSNDAAAEEL------------- 521
++VK+YG ++ EY GS++ L+ D A L
Sbjct: 85 HVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFM 144
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRK 570
DI + N+LL+ E A ++DFG+A L + + ++GT ++AP+ Y
Sbjct: 145 RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDXMAKRNXVIGTPFWMAPEVIQEIGYNC 204
Query: 571 KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS---PDVQGKL 627
D++S + A+E+ +GK P + I P MR M+ P PPP+ P++
Sbjct: 205 VADIWSLGITAIEMAEGKPP---YADIHP------MRAIFMI-PTNPPPTFRKPELWSD- 253
Query: 628 ISIMEVAFSCLDVSPESRPTMQTITQ 653
+ + CL SPE R T + Q
Sbjct: 254 -NFTDFVKQCLVKSPEQRATATQLLQ 278
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 108/261 (41%), Gaps = 51/261 (19%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IGSG+ G V+ +K+ +A+K S++ +F E E + K+ H +V+ YG
Sbjct: 15 IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEE-----DFIEEAEVMMKLSHPKLVQLYG 69
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDA---AAEEL----------------------DI 523
C L++E+++ G L+ L AAE L D+
Sbjct: 70 VCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDL 129
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCDV 574
+++N L+ VSDFG+ +F+ D +++ GT ++ +P+ Y K DV
Sbjct: 130 AARNCLVGENQVIKVSDFGMTRFVLDD--QYTSSTGTKFPVKWASPEVFSFSRYSSKSDV 187
Query: 575 YSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634
+SF VL EV F +P + N + E + P + + ++
Sbjct: 188 WSFGVLMWEV--------FSEGKIPYENRSNSEVVEDISTGFRLYKPRLAS--THVYQIM 237
Query: 635 FSCLDVSPESRPTMQTITQQL 655
C PE RP + +QL
Sbjct: 238 NHCWKERPEDRPAFSRLLRQL 258
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 108/261 (41%), Gaps = 51/261 (19%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IGSG+ G V+ +K+ +A+K S++ +F E E + K+ H +V+ YG
Sbjct: 15 IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEE-----DFIEEAEVMMKLSHPKLVQLYG 69
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDA---AAEEL----------------------DI 523
C L++E+++ G L+ L AAE L D+
Sbjct: 70 VCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEASVIHRDL 129
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCDV 574
+++N L+ VSDFG+ +F+ D +++ GT ++ +P+ Y K DV
Sbjct: 130 AARNCLVGENQVIKVSDFGMTRFVLDD--QYTSSTGTKFPVKWASPEVFSFSRYSSKSDV 187
Query: 575 YSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634
+SF VL EV F +P + N + E + P + + ++
Sbjct: 188 WSFGVLMWEV--------FSEGKIPYENRSNSEVVEDISTGFRLYKPRLAS--THVYQIM 237
Query: 635 FSCLDVSPESRPTMQTITQQL 655
C PE RP + +QL
Sbjct: 238 NHCWKERPEDRPAFSRLLRQL 258
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 108/261 (41%), Gaps = 51/261 (19%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IGSG+ G V+ +K+ +A+K S++ +F E E + K+ H +V+ YG
Sbjct: 13 IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEE-----DFIEEAEVMMKLSHPKLVQLYG 67
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDA---AAEEL----------------------DI 523
C L++E+++ G L+ L AAE L D+
Sbjct: 68 VCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDL 127
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCDV 574
+++N L+ VSDFG+ +F+ D +++ GT ++ +P+ Y K DV
Sbjct: 128 AARNCLVGENQVIKVSDFGMTRFVLDD--QYTSSTGTKFPVKWASPEVFSFSRYSSKSDV 185
Query: 575 YSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634
+SF VL EV F +P + N + E + P + + ++
Sbjct: 186 WSFGVLMWEV--------FSEGKIPYENRSNSEVVEDISTGFRLYKPRLAS--THVYQIM 235
Query: 635 FSCLDVSPESRPTMQTITQQL 655
C PE RP + +QL
Sbjct: 236 NHCWKERPEDRPAFSRLLRQL 256
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 108/261 (41%), Gaps = 51/261 (19%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IGSG+ G V+ +K+ +A+K S++ +F E E + K+ H +V+ YG
Sbjct: 18 IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEE-----DFIEEAEVMMKLSHPKLVQLYG 72
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDA---AAEEL----------------------DI 523
C L++E+++ G L+ L AAE L D+
Sbjct: 73 VCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDL 132
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCDV 574
+++N L+ VSDFG+ +F+ D +++ GT ++ +P+ Y K DV
Sbjct: 133 AARNCLVGENQVIKVSDFGMTRFVLDD--QYTSSTGTKFPVKWASPEVFSFSRYSSKSDV 190
Query: 575 YSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634
+SF VL EV F +P + N + E + P + + ++
Sbjct: 191 WSFGVLMWEV--------FSEGKIPYENRSNSEVVEDISTGFRLYKPRLAS--THVYQIM 240
Query: 635 FSCLDVSPESRPTMQTITQQL 655
C PE RP + +QL
Sbjct: 241 NHCWRERPEDRPAFSRLLRQL 261
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 124/289 (42%), Gaps = 61/289 (21%)
Query: 405 LSFKGKFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIA 463
L F+G +Y + D K+ +G G++G VY +AVK +
Sbjct: 10 LYFQGSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTM 64
Query: 464 DQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------------- 508
+ +EF E + +I+H N+V+ G C+ +I E++ G+L
Sbjct: 65 EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAV 124
Query: 509 -----ATNLSNDAAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555
AT +S +A E L D++++N L+ H V+DFG+++ + D+ ++
Sbjct: 125 VLLYMATQIS--SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT--YT 180
Query: 556 ALVGT---YRYVAPD---YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM 606
A G ++ AP+ Y K K DV++F VL E+ + P P +
Sbjct: 181 AHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDLS 232
Query: 607 RLDEML--DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
++ E+L D R+ P +G + E+ +C +P RP+ I Q
Sbjct: 233 QVYELLEKDYRMERP----EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 277
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 107/261 (40%), Gaps = 51/261 (19%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IGSG+ G V+ +K+ +A+K S + +F E E + K+ H +V+ YG
Sbjct: 35 IGSGQFGLVHLGYWLNKDKVAIKTIKEGSMS-----EDDFIEEAEVMMKLSHPKLVQLYG 89
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDA---AAEEL----------------------DI 523
C L++E+++ G L+ L AAE L D+
Sbjct: 90 VCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDL 149
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCDV 574
+++N L+ VSDFG+ +F+ D +++ GT ++ +P+ Y K DV
Sbjct: 150 AARNCLVGENQVIKVSDFGMTRFVLDD--QYTSSTGTKFPVKWASPEVFSFSRYSSKSDV 207
Query: 575 YSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634
+SF VL EV F +P + N + E + P + + ++
Sbjct: 208 WSFGVLMWEV--------FSEGKIPYENRSNSEVVEDISTGFRLYKPRLAS--THVYQIM 257
Query: 635 FSCLDVSPESRPTMQTITQQL 655
C PE RP + +QL
Sbjct: 258 NHCWKERPEDRPAFSRLLRQL 278
>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain
pdb|3Q4Z|B Chain B, Structure Of Unphosphorylated Pak1 Kinase Domain
Length = 306
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 42/216 (19%)
Query: 411 FDYVEIIRAINDFDAKYC----IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQ 465
+ + II ++ D KY IG G G+VY A ++ + + +A+++ N Q +
Sbjct: 7 LEKLRIIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNL-----QQQPK 61
Query: 466 KEFFA-EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---- 520
KE EI + + ++ NIV + ++ EYL GSL T++ + +E
Sbjct: 62 KELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL-TDVVTETCMDEGQIA 120
Query: 521 --------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT 560
+I S N+LL ++ ++DFG + P+ S S +VGT
Sbjct: 121 AVCRECLQALEFLHSNQVIHRNIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGT 180
Query: 561 YRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
++AP+ Y K D++S ++A+E+I+G+ P
Sbjct: 181 PYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 216
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 121/285 (42%), Gaps = 63/285 (22%)
Query: 409 GKFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKE 467
G D E+ R D K+ +G G++G VY +AVK + + +E
Sbjct: 1 GSLDKWEMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEE 53
Query: 468 FFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------------------- 508
F E + +I+H N+V+ G C+ +I E++ G+L
Sbjct: 54 FLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLY 113
Query: 509 -ATNLSNDAAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
AT +S +A E L D++++N L+ H V+DFG+++ + D+ +A G
Sbjct: 114 MATQIS--SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTX--TAHAG 169
Query: 560 T---YRYVAPD---YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDE 610
++ AP+ Y K K DV++F VL E+ + P P + ++ E
Sbjct: 170 AKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDPSQVYE 221
Query: 611 ML--DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
+L D R+ P +G + E+ +C +P RP+ I Q
Sbjct: 222 LLEKDYRMERP----EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 262
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 42/210 (20%)
Query: 417 IRAINDFDAKYC----IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFA- 470
I ++ D KY IG G G+VY A ++ + + +A+++ N Q +KE
Sbjct: 12 IVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNL-----QQQPKKELIIN 66
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------- 520
EI + + ++ NIV + ++ EYL GSL T++ + +E
Sbjct: 67 EILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL-TDVVTETCMDEGQIAAVCREC 125
Query: 521 --------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP 566
DI S N+LL ++ ++DFG + P+ S S +VGT ++AP
Sbjct: 126 LQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAP 185
Query: 567 D------YRKKCDVYSFRVLALEVIKGKHP 590
+ Y K D++S ++A+E+I+G+ P
Sbjct: 186 EVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 215
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 42/210 (20%)
Query: 417 IRAINDFDAKYC----IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFA- 470
I ++ D KY IG G G+VY A ++ + + +A+++ N Q +KE
Sbjct: 13 IVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNL-----QQQPKKELIIN 67
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------- 520
EI + + ++ NIV + ++ EYL GSL T++ + +E
Sbjct: 68 EILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL-TDVVTETCMDEGQIAAVCREC 126
Query: 521 --------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP 566
DI S N+LL ++ ++DFG + P+ S S +VGT ++AP
Sbjct: 127 LQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAP 186
Query: 567 D------YRKKCDVYSFRVLALEVIKGKHP 590
+ Y K D++S ++A+E+I+G+ P
Sbjct: 187 EVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 216
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 42/210 (20%)
Query: 417 IRAINDFDAKYC----IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFA- 470
I ++ D KY IG G G+VY A ++ + + +A+++ N Q +KE
Sbjct: 12 IVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNL-----QQQPKKELIIN 66
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------- 520
EI + + ++ NIV + ++ EYL GSL T++ + +E
Sbjct: 67 EILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL-TDVVTETCMDEGQIAAVCREC 125
Query: 521 --------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP 566
DI S N+LL ++ ++DFG + P+ S S +VGT ++AP
Sbjct: 126 LQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAP 185
Query: 567 D------YRKKCDVYSFRVLALEVIKGKHP 590
+ Y K D++S ++A+E+I+G+ P
Sbjct: 186 EVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 215
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 122/283 (43%), Gaps = 63/283 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFF 469
+D E+ R D K+ +G G++G VY +AVK + + +EF
Sbjct: 209 YDKWEMERT--DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFL 261
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------A 509
E + +I+H N+V+ G C+ +I E++ G+L A
Sbjct: 262 KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMA 321
Query: 510 TNLSNDAAAEELD--------ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT- 560
T +S +A E L+ ++++N L+ H V+DFG+++ + D+ ++A G
Sbjct: 322 TQIS--SAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAK 377
Query: 561 --YRYVAPD---YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612
++ AP+ Y K K DV++F VL E+ + P P + ++ E+L
Sbjct: 378 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDLSQVYELL 429
Query: 613 --DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
D R+ P +G + E+ +C +P RP+ I Q
Sbjct: 430 EKDYRMERP----EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 468
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 68
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY RG + L + +E
Sbjct: 69 HLRHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKLSKFDEQRTATYITELANALSY 128
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS + L GT Y+ P+
Sbjct: 129 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGR 186
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 187 MHDEKVDLWSLGVLCYEFLVGKPP 210
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 42/210 (20%)
Query: 417 IRAINDFDAKYC----IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFA- 470
I ++ D KY IG G G+VY A ++ + + +A+++ N Q +KE
Sbjct: 12 IVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNL-----QQQPKKELIIN 66
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------- 520
EI + + ++ NIV + ++ EYL GSL T++ + +E
Sbjct: 67 EILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL-TDVVTETCMDEGQIAAVCREC 125
Query: 521 --------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP 566
DI S N+LL ++ ++DFG + P+ S S +VGT ++AP
Sbjct: 126 LQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSEMVGTPYWMAP 185
Query: 567 D------YRKKCDVYSFRVLALEVIKGKHP 590
+ Y K D++S ++A+E+I+G+ P
Sbjct: 186 EVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 215
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 107/261 (40%), Gaps = 51/261 (19%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IGSG+ G V+ +K+ +A+K S++ +F E E + K+ H +V+ YG
Sbjct: 16 IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEE-----DFIEEAEVMMKLSHPKLVQLYG 70
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDA---AAEEL----------------------DI 523
C L+ E+++ G L+ L AAE L D+
Sbjct: 71 VCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDL 130
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCDV 574
+++N L+ VSDFG+ +F+ D +++ GT ++ +P+ Y K DV
Sbjct: 131 AARNCLVGENQVIKVSDFGMTRFVLDD--QYTSSTGTKFPVKWASPEVFSFSRYSSKSDV 188
Query: 575 YSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634
+SF VL EV F +P + N + E + P + + ++
Sbjct: 189 WSFGVLMWEV--------FSEGKIPYENRSNSEVVEDISTGFRLYKPRLAS--THVYQIM 238
Query: 635 FSCLDVSPESRPTMQTITQQL 655
C PE RP + +QL
Sbjct: 239 NHCWRERPEDRPAFSRLLRQL 259
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 63/283 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFF 469
+D E+ R D K+ +G G++G VY +AVK + + +EF
Sbjct: 10 YDKWEMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFL 62
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------A 509
E + +I+H N+V+ G C+ +I E++ G+L A
Sbjct: 63 KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMA 122
Query: 510 TNLSNDAAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT- 560
T +S +A E L D++++N L+ H V+DFG+++ + D+ ++A G
Sbjct: 123 TQIS--SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAK 178
Query: 561 --YRYVAPD---YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612
++ AP+ Y K K DV++F VL E+ + P P + ++ E+L
Sbjct: 179 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDLSQVYELL 230
Query: 613 --DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
D R+ P +G + E+ +C +P RP+ I Q
Sbjct: 231 EKDYRMERP----EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 269
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 63/283 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFF 469
+D E+ R D K+ +G G++G VY +AVK + + +EF
Sbjct: 7 YDKWEMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFL 59
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------A 509
E + +I+H N+V+ G C+ +I E++ G+L A
Sbjct: 60 KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMA 119
Query: 510 TNLSNDAAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT- 560
T +S +A E L D++++N L+ H V+DFG+++ + D+ ++A G
Sbjct: 120 TQIS--SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAK 175
Query: 561 --YRYVAPD---YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612
++ AP+ Y K K DV++F VL E+ + P P + ++ E+L
Sbjct: 176 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDLSQVYELL 227
Query: 613 --DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
D R+ P +G + E+ +C +P RP+ I Q
Sbjct: 228 EKDYRMERP----EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 266
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 63/283 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFF 469
+D E+ R D K+ +G G++G VY +AVK + + +EF
Sbjct: 9 YDKWEMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFL 61
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------A 509
E + +I+H N+V+ G C+ +I E++ G+L A
Sbjct: 62 KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMA 121
Query: 510 TNLSNDAAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT- 560
T +S +A E L D++++N L+ H V+DFG+++ + D+ ++A G
Sbjct: 122 TQIS--SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAK 177
Query: 561 --YRYVAPD---YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612
++ AP+ Y K K DV++F VL E+ + P P + ++ E+L
Sbjct: 178 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDLSQVYELL 229
Query: 613 --DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
D R+ P +G + E+ +C +P RP+ I Q
Sbjct: 230 EKDYRMERP----EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 268
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 63/283 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFF 469
+D E+ R D K+ +G G++G VY +AVK + + +EF
Sbjct: 10 YDKWEMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFL 62
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------A 509
E + +I+H N+V+ G C+ +I E++ G+L A
Sbjct: 63 KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMA 122
Query: 510 TNLSNDAAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT- 560
T +S +A E L D++++N L+ H V+DFG+++ + D+ ++A G
Sbjct: 123 TQIS--SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAK 178
Query: 561 --YRYVAPD---YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612
++ AP+ Y K K DV++F VL E+ + P P + ++ E+L
Sbjct: 179 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDLSQVYELL 230
Query: 613 --DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
D R+ P +G + E+ +C +P RP+ I Q
Sbjct: 231 EKDYRMERP----EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 269
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 122/283 (43%), Gaps = 63/283 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFF 469
+D E+ R D K+ +G G++G VY +AVK + + +EF
Sbjct: 251 YDKWEMERT--DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFL 303
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------A 509
E + +I+H N+V+ G C+ +I E++ G+L A
Sbjct: 304 KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMA 363
Query: 510 TNLSNDAAAEELD--------ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT- 560
T +S +A E L+ ++++N L+ H V+DFG+++ + D+ ++A G
Sbjct: 364 TQIS--SAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAK 419
Query: 561 --YRYVAPD---YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612
++ AP+ Y K K DV++F VL E+ + P P + ++ E+L
Sbjct: 420 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDLSQVYELL 471
Query: 613 --DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
D R+ P +G + E+ +C +P RP+ I Q
Sbjct: 472 EKDYRMERP----EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 510
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 63/283 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFF 469
+D E+ R D K+ +G G++G VY +AVK + + +EF
Sbjct: 5 YDKWEMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFL 57
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------A 509
E + +I+H N+V+ G C+ +I E++ G+L A
Sbjct: 58 KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMA 117
Query: 510 TNLSNDAAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT- 560
T +S +A E L D++++N L+ H V+DFG+++ + D+ ++A G
Sbjct: 118 TQIS--SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAK 173
Query: 561 --YRYVAPD---YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612
++ AP+ Y K K DV++F VL E+ + P P + ++ E+L
Sbjct: 174 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDLSQVYELL 225
Query: 613 --DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
D R+ P +G + E+ +C +P RP+ I Q
Sbjct: 226 EKDYRMERP----EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 264
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 63/283 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFF 469
+D E+ R D K+ +G G++G VY +AVK + + +EF
Sbjct: 7 YDKWEMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFL 59
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------A 509
E + +I+H N+V+ G C+ +I E++ G+L A
Sbjct: 60 KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMA 119
Query: 510 TNLSNDAAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT- 560
T +S +A E L D++++N L+ H V+DFG+++ + D+ ++A G
Sbjct: 120 TQIS--SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAK 175
Query: 561 --YRYVAPD---YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612
++ AP+ Y K K DV++F VL E+ + P P + ++ E+L
Sbjct: 176 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDLSQVYELL 227
Query: 613 --DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
D R+ P +G + E+ +C +P RP+ I Q
Sbjct: 228 EKDYRMERP----EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 266
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 63/283 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFF 469
+D E+ R D K+ +G G++G VY +AVK + + +EF
Sbjct: 10 YDKWEMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFL 62
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------A 509
E + +I+H N+V+ G C+ +I E++ G+L A
Sbjct: 63 KEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMA 122
Query: 510 TNLSNDAAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT- 560
T +S +A E L D++++N L+ H V+DFG+++ + D+ ++A G
Sbjct: 123 TQIS--SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAK 178
Query: 561 --YRYVAPD---YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612
++ AP+ Y K K DV++F VL E+ + P P + ++ E+L
Sbjct: 179 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDLSQVYELL 230
Query: 613 --DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
D R+ P +G + E+ +C +P RP+ I Q
Sbjct: 231 EKDYRMERP----EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 269
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 63/283 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFF 469
+D E+ R D K+ +G G++G VY +AVK + + +EF
Sbjct: 5 YDKWEMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFL 57
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------A 509
E + +I+H N+V+ G C+ +I E++ G+L A
Sbjct: 58 KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMA 117
Query: 510 TNLSNDAAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT- 560
T +S +A E L D++++N L+ H V+DFG+++ + D+ ++A G
Sbjct: 118 TQIS--SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAK 173
Query: 561 --YRYVAPD---YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612
++ AP+ Y K K DV++F VL E+ + P P + ++ E+L
Sbjct: 174 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDLSQVYELL 225
Query: 613 --DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
D R+ P +G + E+ +C +P RP+ I Q
Sbjct: 226 EKDYRMERP----EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 264
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 63/283 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFF 469
+D E+ R D K+ +G G++G VY +AVK + + +EF
Sbjct: 5 YDKWEMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFL 57
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------A 509
E + +I+H N+V+ G C+ +I E++ G+L A
Sbjct: 58 KEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMA 117
Query: 510 TNLSNDAAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT- 560
T +S +A E L D++++N L+ H V+DFG+++ + D+ ++A G
Sbjct: 118 TQIS--SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAK 173
Query: 561 --YRYVAPD---YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612
++ AP+ Y K K DV++F VL E+ + P P + ++ E+L
Sbjct: 174 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDLSQVYELL 225
Query: 613 --DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
D R+ P +G + E+ +C +P RP+ I Q
Sbjct: 226 EKDYRMERP----EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 264
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 63/283 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFF 469
+D E+ R D K+ +G G++G VY +AVK + + +EF
Sbjct: 6 YDKWEMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFL 58
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------A 509
E + +I+H N+V+ G C+ +I E++ G+L A
Sbjct: 59 KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMA 118
Query: 510 TNLSNDAAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT- 560
T +S +A E L D++++N L+ H V+DFG+++ + D+ ++A G
Sbjct: 119 TQIS--SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT--YTAPAGAK 174
Query: 561 --YRYVAPD---YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612
++ AP+ Y K K DV++F VL E+ + P P + ++ E+L
Sbjct: 175 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDLSQVYELL 226
Query: 613 --DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
D R+ P +G + E+ +C +P RP+ I Q
Sbjct: 227 EKDYRMERP----EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 265
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 124/291 (42%), Gaps = 63/291 (21%)
Query: 403 SILSFKGKFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQ 461
+I +D E+ R D K+ +G G++G VY +AVK +
Sbjct: 204 TIYGVSPNYDKWEMERT--DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----ED 256
Query: 462 IADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------------- 508
+ +EF E + +I+H N+V+ G C+ +I E++ G+L
Sbjct: 257 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVS 316
Query: 509 -------ATNLSNDAAAEELD--------ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553
AT +S +A E L+ ++++N L+ H V+DFG+++ + D+
Sbjct: 317 AVVLLYMATQIS--SAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT-- 372
Query: 554 WSALVGT---YRYVAPD---YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVI 604
++A G ++ AP+ Y K K DV++F VL E+ + P P +
Sbjct: 373 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGID 424
Query: 605 NMRLDEML--DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
++ E+L D R+ P +G + E+ +C +P RP+ I Q
Sbjct: 425 LSQVYELLEKDYRMERP----EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 471
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 121/283 (42%), Gaps = 63/283 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFF 469
+D E+ R D K+ +G G++G VY +AVK + + +EF
Sbjct: 10 YDKWEMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFL 62
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------A 509
E + +I+H N+V+ G C+ +I E++ G+L A
Sbjct: 63 KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMA 122
Query: 510 TNLSNDAAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT- 560
T +S +A E L D++++N L+ H V+DFG+++ + D+ +A G
Sbjct: 123 TQIS--SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTX--TAHAGAK 178
Query: 561 --YRYVAPD---YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612
++ AP+ Y K K DV++F VL E+ + P P + ++ E+L
Sbjct: 179 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDLSQVYELL 230
Query: 613 --DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
D R+ P +G + E+ +C +P RP+ I Q
Sbjct: 231 EKDYRMERP----EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 269
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 123/268 (45%), Gaps = 55/268 (20%)
Query: 429 IGSGRHGSVYRA--ELPSKE--FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG+G G V +LP K F+A+K S Q +++F +E + + H N++
Sbjct: 41 IGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQ---RRDFLSEASIMGQFDHPNVI 97
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNL-SND---------------AAAEEL------- 521
G + + ++I E+++ GSL + L ND AA +
Sbjct: 98 HLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYV 157
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN---WSALVGT--YRYVAPD---YRK- 570
D++++N+L++ VSDFG+++FL+ D+S+ SAL G R+ AP+ YRK
Sbjct: 158 HRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKF 217
Query: 571 --KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627
DV+S+ ++ EV+ G+ P ++ + VIN +++ D RLPPP D L
Sbjct: 218 TSASDVWSYGIVMWEVMSYGERPYWDMT----NQDVINA-IEQ--DYRLPPPM-DCPSAL 269
Query: 628 ISIMEVAFSCLDVSPESRPTMQTITQQL 655
+M C RP I L
Sbjct: 270 HQLM---LDCWQKDRNHRPKFGQIVNTL 294
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 111/268 (41%), Gaps = 61/268 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFL-AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G V+ L + L AVK LP D A +F E L + H NIV+
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKA---KFLQEARILKQYSHPNIVRLI 178
Query: 488 GFCSHARHSILIYEYLKRGSLAT---------------NLSNDAAA--EEL--------D 522
G C+ + ++ E ++ G T + DAAA E L D
Sbjct: 179 GVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRD 238
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR-----YVAPD------YRKK 571
++++N L+ ++ +SDFG++ + ++ A G R + AP+ Y +
Sbjct: 239 LAARNCLVTEKNVLKISDFGMS---REEADGVXAASGGLRQVPVKWTAPEALNYGRYSSE 295
Query: 572 CDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS--PDVQGKL 627
DV+SF +L E F P P++ N + E ++ RLP P PD +
Sbjct: 296 SDVWSFGILLWET--------FSLGASPYPNLSNQQTREFVEKGGRLPCPELCPDA---V 344
Query: 628 ISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ME C P RP+ TI Q+L
Sbjct: 345 FRLME---QCWAYEPGQRPSFSTIYQEL 369
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 63/283 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFF 469
+D E+ R D K+ +G G++G VY +AVK + + +EF
Sbjct: 5 YDKWEMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFL 57
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------A 509
E + +I+H N+V+ G C+ +I E++ G+L A
Sbjct: 58 KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMA 117
Query: 510 TNLSNDAAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT- 560
T +S +A E L D++++N L+ H V+DFG+++ + D+ ++A G
Sbjct: 118 TQIS--SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAK 173
Query: 561 --YRYVAPD---YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612
++ AP+ Y K K DV++F VL E+ + P P + ++ E+L
Sbjct: 174 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDLSQVYELL 225
Query: 613 --DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
D R+ P +G + E+ +C +P RP+ I Q
Sbjct: 226 EKDYRMERP----EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 264
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 63/283 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFF 469
+D E+ R D K+ +G G++G VY +AVK + + +EF
Sbjct: 7 YDKWEMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFL 59
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------A 509
E + +I+H N+V+ G C+ +I E++ G+L A
Sbjct: 60 KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMA 119
Query: 510 TNLSNDAAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT- 560
T +S +A E L D++++N L+ H V+DFG+++ + D+ ++A G
Sbjct: 120 TQIS--SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT--YTAPAGAK 175
Query: 561 --YRYVAPD---YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612
++ AP+ Y K K DV++F VL E+ + P P + ++ E+L
Sbjct: 176 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDLSQVYELL 227
Query: 613 --DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
D R+ P +G + E+ +C +P RP+ I Q
Sbjct: 228 EKDYRMERP----EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 266
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 63/283 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFF 469
+D E+ R D K+ +G G++G VY +AVK + + +EF
Sbjct: 5 YDKWEMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFL 57
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------A 509
E + +I+H N+V+ G C+ +I E++ G+L A
Sbjct: 58 KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMA 117
Query: 510 TNLSNDAAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT- 560
T +S +A E L D++++N L+ H V+DFG+++ + D+ ++A G
Sbjct: 118 TQIS--SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAK 173
Query: 561 --YRYVAPD---YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612
++ AP+ Y K K DV++F VL E+ + P P + ++ E+L
Sbjct: 174 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDLSQVYELL 225
Query: 613 --DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
D R+ P +G + E+ +C +P RP+ I Q
Sbjct: 226 EKDYRMERP----EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 264
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 63/283 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFF 469
+D E+ R D K+ +G G++G VY +AVK + + +EF
Sbjct: 5 YDKWEMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFL 57
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------A 509
E + +I+H N+V+ G C+ +I E++ G+L A
Sbjct: 58 KEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMA 117
Query: 510 TNLSNDAAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT- 560
T +S +A E L D++++N L+ H V+DFG+++ + D+ ++A G
Sbjct: 118 TQIS--SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAK 173
Query: 561 --YRYVAPD---YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612
++ AP+ Y K K DV++F VL E+ + P P + ++ E+L
Sbjct: 174 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDLSQVYELL 225
Query: 613 --DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
D R+ P +G + E+ +C +P RP+ I Q
Sbjct: 226 EKDYRMERP----EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 264
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 63/283 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFF 469
+D E+ R D K+ +G G++G VY +AVK + + +EF
Sbjct: 10 YDKWEMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFL 62
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------A 509
E + +I+H N+V+ G C+ +I E++ G+L A
Sbjct: 63 KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMA 122
Query: 510 TNLSNDAAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT- 560
T +S +A E L D++++N L+ H V+DFG+++ + D+ ++A G
Sbjct: 123 TQIS--SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAK 178
Query: 561 --YRYVAPD---YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612
++ AP+ Y K K DV++F VL E+ + P P + ++ E+L
Sbjct: 179 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDLSQVYELL 230
Query: 613 --DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
D R+ P +G + E+ +C +P RP+ I Q
Sbjct: 231 EKDYRMERP----EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 269
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 121/283 (42%), Gaps = 63/283 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFF 469
+D E+ R D K+ +G G++G VY +AVK + + +EF
Sbjct: 6 YDKWEMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFL 58
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------A 509
E + +I+H N+V+ G C+ +I E++ G+L A
Sbjct: 59 KEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMA 118
Query: 510 TNLSNDAAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT- 560
T +S +A E L D++++N L+ H V+DFG+++ + D+ +A G
Sbjct: 119 TQIS--SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTX--TAHAGAK 174
Query: 561 --YRYVAPD---YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612
++ AP+ Y K K DV++F VL E+ + P P + ++ E+L
Sbjct: 175 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDLSQVYELL 226
Query: 613 --DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
D R+ P +G + E+ +C +P RP+ I Q
Sbjct: 227 EKDYRMERP----EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 265
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 92/204 (45%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 66
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 67 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 126
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS +AL GT Y+ P+
Sbjct: 127 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRAALCGTLDYLPPEMIEGR 184
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 185 MHDEKVDLWSLGVLCYEFLVGKPP 208
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 68
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY RG + L + +E
Sbjct: 69 HLRHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKLSKFDEQRTATYITELANALSY 128
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS L GT Y+ P+
Sbjct: 129 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRXXLXGTLDYLPPEMIEGR 186
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 187 MHDEKVDLWSLGVLCYEFLVGKPP 210
>pdb|3H9R|A Chain A, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
Length = 330
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 117/292 (40%), Gaps = 73/292 (25%)
Query: 428 CIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI--RHRNIVK 485
C+G GR+G V+R E +AVK F+S D+K +F E E + RH NI+
Sbjct: 44 CVGKGRYGEVWRGSWQG-ENVAVKIFSS-------RDEKSWFRETELYNTVMLRHENILG 95
Query: 486 FYGFCSHARHS----ILIYEYLKRGSL---------------------ATNLSN------ 514
F +RHS LI Y + GSL A+ L++
Sbjct: 96 FIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIF 155
Query: 515 ----DAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL-----VGTYRYVA 565
A D+ SKN+L+ + ++D G+A + S+N + VGT RY+A
Sbjct: 156 GTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLA-VMHSQSTNQLDVGNNPRVGTKRYMA 214
Query: 566 P------------DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILP--------SPSVIN 605
P D K+ D+++F ++ EV + G V P PS +
Sbjct: 215 PEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFED 274
Query: 606 MRLDEMLDPRLP--PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
MR +D + P P L S+ ++ C +P +R T I + L
Sbjct: 275 MRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTL 326
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 111/268 (41%), Gaps = 61/268 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFL-AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G V+ L + L AVK LP D A +F E L + H NIV+
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKA---KFLQEARILKQYSHPNIVRLI 178
Query: 488 GFCSHARHSILIYEYLKRGSLAT---------------NLSNDAAA--EEL--------D 522
G C+ + ++ E ++ G T + DAAA E L D
Sbjct: 179 GVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRD 238
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR-----YVAPD------YRKK 571
++++N L+ ++ +SDFG++ + ++ A G R + AP+ Y +
Sbjct: 239 LAARNCLVTEKNVLKISDFGMS---REEADGVYAASGGLRQVPVKWTAPEALNYGRYSSE 295
Query: 572 CDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS--PDVQGKL 627
DV+SF +L E F P P++ N + E ++ RLP P PD +
Sbjct: 296 SDVWSFGILLWET--------FSLGASPYPNLSNQQTREFVEKGGRLPCPELCPDA---V 344
Query: 628 ISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ME C P RP+ TI Q+L
Sbjct: 345 FRLME---QCWAYEPGQRPSFSTIYQEL 369
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 122/292 (41%), Gaps = 74/292 (25%)
Query: 421 NDFDAKYCIGSGRHGSVYRAEL----PSKE--FLAVKKFNSPLPSDQIADQKEFFAEIEA 474
D K +G G G V+ AE P+K+ +AVK P +A +K+F E E
Sbjct: 15 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDP----TLAARKDFQREAEL 70
Query: 475 LTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN---DA----------AAEEL 521
LT ++H +IVKFYG C I+++EY+K G L L DA A EL
Sbjct: 71 LTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGEL 130
Query: 522 ---------------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554
D++++N L+ + DFG+++ + S+++
Sbjct: 131 GLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVY--STDY 188
Query: 555 SALVG----TYRYVAPD---YRK---KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSV 603
+ G R++ P+ YRK + DV+SF V+ E+ GK P +S+ +
Sbjct: 189 YRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECI 248
Query: 604 INMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
R+ E PR+ P + +V C P+ R ++ I + L
Sbjct: 249 TQGRVLE--RPRVCPK---------EVYDVMLGCWQREPQQRLNIKEIYKIL 289
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 32/202 (15%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
A+ DF+ +G G+ G+VY A ++F+ K ++ + + E+E + +
Sbjct: 3 ALEDFEIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 62
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------------ 520
RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 63 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 122
Query: 521 ------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------Y 568
DI +N+LL + ++DFG + + SS + L GT Y+ P+ +
Sbjct: 123 SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMH 180
Query: 569 RKKCDVYSFRVLALEVIKGKHP 590
+K D++S VL E + GK P
Sbjct: 181 DEKVDLWSLGVLCYEFLVGKPP 202
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 92/204 (45%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 63
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 64 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 123
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS +AL GT Y+ P+
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRAALCGTLDYLPPEMIEGR 181
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 182 MHDEKVDLWSLGVLCYEFLVGKPP 205
>pdb|4DYM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With The Imidazo[1,2-B]pyridazine Inhibitor K00135
Length = 301
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 117/292 (40%), Gaps = 73/292 (25%)
Query: 428 CIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI--RHRNIVK 485
C+G GR+G V+R E +AVK F+S D+K +F E E + RH NI+
Sbjct: 15 CVGKGRYGEVWRGSWQG-ENVAVKIFSS-------RDEKSWFRETELYNTVMLRHENILG 66
Query: 486 FYGFCSHARHS----ILIYEYLKRGSL---------------------ATNLSN------ 514
F +RHS LI Y + GSL A+ L++
Sbjct: 67 FIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIF 126
Query: 515 ----DAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL-----VGTYRYVA 565
A D+ SKN+L+ + ++D G+A + S+N + VGT RY+A
Sbjct: 127 GTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLA-VMHSQSTNQLDVGNNPRVGTKRYMA 185
Query: 566 P------------DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILP--------SPSVIN 605
P D K+ D+++F ++ EV + G V P PS +
Sbjct: 186 PEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFED 245
Query: 606 MRLDEMLDPRLP--PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
MR +D + P P L S+ ++ C +P +R T I + L
Sbjct: 246 MRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTL 297
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 117/273 (42%), Gaps = 61/273 (22%)
Query: 421 NDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
D K+ +G G++G VY +AVK + + +EF E + +I+
Sbjct: 11 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEIK 65
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------ATNLSNDAAAE 519
H N+V+ G C+ +I E++ G+L AT +S +A E
Sbjct: 66 HPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQIS--SAME 123
Query: 520 EL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD- 567
L D++++N L+ H V+DFG+++ + D+ ++A G ++ AP+
Sbjct: 124 YLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT--FTAHAGAKFPIKWTAPES 181
Query: 568 --YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML--DPRLPPPS 620
Y K K DV++F VL E+ + P P + ++ E+L D R+ P
Sbjct: 182 LAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDPSQVYELLEKDYRMERP- 232
Query: 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
+G + E+ +C +P RP+ I Q
Sbjct: 233 ---EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 262
>pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2-
Aminopyridine Inhibitor
pdb|3MTF|B Chain B, Crystal Structure Of The Acvr1 Kinase In Complex With A 2-
Aminopyridine Inhibitor
pdb|3OOM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With The Imidazo[1,2-B]pyridazine Inhibitor K00507
pdb|3Q4U|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|B Chain B, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|C Chain C, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|D Chain D, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
Length = 301
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 117/292 (40%), Gaps = 73/292 (25%)
Query: 428 CIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI--RHRNIVK 485
C+G GR+G V+R E +AVK F+S D+K +F E E + RH NI+
Sbjct: 15 CVGKGRYGEVWRGSWQG-ENVAVKIFSS-------RDEKSWFRETELYNTVMLRHENILG 66
Query: 486 FYGFCSHARHS----ILIYEYLKRGSL---------------------ATNLSN------ 514
F +RHS LI Y + GSL A+ L++
Sbjct: 67 FIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIF 126
Query: 515 ----DAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL-----VGTYRYVA 565
A D+ SKN+L+ + ++D G+A + S+N + VGT RY+A
Sbjct: 127 GTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLA-VMHSQSTNQLDVGNNPRVGTKRYMA 185
Query: 566 P------------DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILP--------SPSVIN 605
P D K+ D+++F ++ EV + G V P PS +
Sbjct: 186 PEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFED 245
Query: 606 MRLDEMLDPRLP--PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
MR +D + P P L S+ ++ C +P +R T I + L
Sbjct: 246 MRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTL 297
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 127/291 (43%), Gaps = 73/291 (25%)
Query: 421 NDFDAKYCIGSGRHGSVYRAE----LPSKE--FLAVKKFNSPLPSDQIADQKEFFAEIEA 474
D K+ +G G G V+ AE LP ++ +AVK S + ++F E E
Sbjct: 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESAR----QDFQREAEL 96
Query: 475 LTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSND-------AAAEEL------ 521
LT ++H++IV+F+G C+ R ++++EY++ G L L + A E++
Sbjct: 97 LTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLG 156
Query: 522 --------------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555
D++++N L+ + DFG+++ + S+++
Sbjct: 157 LGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIY--STDYY 214
Query: 556 ALVGT----YRYVAPD---YRK---KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVI 604
+ G R++ P+ YRK + DV+SF V+ E+ GK P +S+ +
Sbjct: 215 RVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCIT 274
Query: 605 NMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
R E+ PR PP ++ +IM C P+ R +++ + +L
Sbjct: 275 QGR--ELERPRACPP------EVYAIMR---GCWQREPQQRHSIKDVHARL 314
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 10 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 67
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 68 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 127
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS + L GT Y+ P+
Sbjct: 128 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGR 185
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 186 MHDEKVDLWSLGVLCYEFLVGKPP 209
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 127/291 (43%), Gaps = 73/291 (25%)
Query: 421 NDFDAKYCIGSGRHGSVYRAE----LPSKE--FLAVKKFNSPLPSDQIADQKEFFAEIEA 474
D K+ +G G G V+ AE LP ++ +AVK S + ++F E E
Sbjct: 12 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESAR----QDFQREAEL 67
Query: 475 LTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSND-------AAAEEL------ 521
LT ++H++IV+F+G C+ R ++++EY++ G L L + A E++
Sbjct: 68 LTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLG 127
Query: 522 --------------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555
D++++N L+ + DFG+++ + S+++
Sbjct: 128 LGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIY--STDYY 185
Query: 556 ALVGT----YRYVAPD---YRK---KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVI 604
+ G R++ P+ YRK + DV+SF V+ E+ GK P +S+ +
Sbjct: 186 RVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCIT 245
Query: 605 NMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
R E+ PR PP ++ +IM C P+ R +++ + +L
Sbjct: 246 QGR--ELERPRACPP------EVYAIMR---GCWQREPQQRHSIKDVHARL 285
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 118/279 (42%), Gaps = 53/279 (18%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKF---NSPLPSDQIADQKEFFAEIEA 474
A N+ + + IG G G V++ L K +A+K +S ++ I +EF E+
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 475 LTKIRHRNIVKFYGF-------------CSHARHSILIYEYLKRGSLATNLSNDAAAE-- 519
++ + H NIVK YG C H +L + + S+ L D A
Sbjct: 77 MSNLNHPNIVKLYGLMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIE 136
Query: 520 ----------ELDISSKNVLLDLEHK-----AHVSDFGIAKFLKPDSSNWSALVGTYRYV 564
D+ S N+ L + A V+DFG++ + + S L+G ++++
Sbjct: 137 YMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLS---QQSVHSVSGLLGNFQWM 193
Query: 565 APD--------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRL 616
AP+ Y +K D YSF ++ ++ G+ P F INM +E L P +
Sbjct: 194 APETIGAEEESYTEKADTYSFAMILYTILTGEGP--FDEYSYGKIKFINMIREEGLRPTI 251
Query: 617 PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
P P +L +++E+ C P+ RP I ++L
Sbjct: 252 PEDCPP---RLRNVIEL---CWSGDPKKRPHFSYIVKEL 284
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 32 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 89
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 90 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 149
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS + L GT Y+ P+
Sbjct: 150 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGR 207
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 208 MHDEKVDLWSLGVLCYEFLVGKPP 231
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 63
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 64 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 123
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS + L GT Y+ P+
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGR 181
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 182 MHDEKVDLWSLGVLCYEFLVGKPP 205
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 63
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 64 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 123
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS + L GT Y+ P+
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTELCGTLDYLPPEMIEGR 181
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 182 MHDEKVDLWSLGVLCYEFLVGKPP 205
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 127/291 (43%), Gaps = 73/291 (25%)
Query: 421 NDFDAKYCIGSGRHGSVYRAE----LPSKE--FLAVKKFNSPLPSDQIADQKEFFAEIEA 474
D K+ +G G G V+ AE LP ++ +AVK S + ++F E E
Sbjct: 18 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESAR----QDFQREAEL 73
Query: 475 LTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSND-------AAAEEL------ 521
LT ++H++IV+F+G C+ R ++++EY++ G L L + A E++
Sbjct: 74 LTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLG 133
Query: 522 --------------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555
D++++N L+ + DFG+++ + S+++
Sbjct: 134 LGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIY--STDYY 191
Query: 556 ALVGT----YRYVAPD---YRK---KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVI 604
+ G R++ P+ YRK + DV+SF V+ E+ GK P +S+ +
Sbjct: 192 RVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCIT 251
Query: 605 NMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
R E+ PR PP ++ +IM C P+ R +++ + +L
Sbjct: 252 QGR--ELERPRACPP------EVYAIMR---GCWQREPQQRHSIKDVHARL 291
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 5 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 62
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 63 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 122
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS + L GT Y+ P+
Sbjct: 123 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGR 180
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 181 MHDEKVDLWSLGVLCYEFLVGKPP 204
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 68
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 69 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 128
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS + L GT Y+ P+
Sbjct: 129 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGR 186
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 187 MHDEKVDLWSLGVLCYEFLVGKPP 210
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 66
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 67 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 126
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS + L GT Y+ P+
Sbjct: 127 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGR 184
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 185 MHDEKVDLWSLGVLCYEFLVGKPP 208
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 63
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 64 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 123
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS + L GT Y+ P+
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTXLCGTLDYLPPEMIEGR 181
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 182 MHDEKVDLWSLGVLCYEFLVGKPP 205
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 66
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 67 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 126
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS + L GT Y+ P+
Sbjct: 127 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGR 184
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 185 MHDEKVDLWSLGVLCYEFLVGKPP 208
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 124/268 (46%), Gaps = 55/268 (20%)
Query: 429 IGSGRHGSVYRAEL--PSKE--FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG+G G V R L P K+ +A+K Q ++EF +E + + H NI+
Sbjct: 22 IGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQ---RREFLSEASIMGQFEHPNII 78
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-NDAA--------------------AE---- 519
+ G +++ +++ E+++ G+L + L ND AE
Sbjct: 79 RLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSYV 138
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN---WSALVGT--YRYVAPD---YRK- 570
D++++N+L++ VSDFG+++FL+ +SS+ S+L G R+ AP+ +RK
Sbjct: 139 HRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTYTSSLGGKIPIRWTAPEAIAFRKF 198
Query: 571 --KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627
D +S+ ++ EV+ G+ P +S + VIN +++ D RLPPP PD L
Sbjct: 199 TSASDAWSYGIVMWEVMSFGERPYWDMS----NQDVINA-IEQ--DYRLPPP-PDCPTSL 250
Query: 628 ISIMEVAFSCLDVSPESRPTMQTITQQL 655
+M C +RP + L
Sbjct: 251 HQLM---LDCWQKDRNARPRFPQVVSAL 275
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 115/273 (42%), Gaps = 61/273 (22%)
Query: 421 NDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
D K+ +G G+ G VY +AVK + + +EF E + +I+
Sbjct: 11 TDITMKHKLGGGQFGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEIK 65
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------ATNLSNDAAAE 519
H N+V+ G C+ +I E++ G+L AT +S +A E
Sbjct: 66 HPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQIS--SAME 123
Query: 520 EL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD- 567
L D++++N L+ H V+DFG+++ + D+ +A G ++ AP+
Sbjct: 124 YLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTX--TAHAGAKFPIKWTAPES 181
Query: 568 --YRK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML--DPRLPPPS 620
Y K K DV++F VL E+ + P P + ++ E+L D R+ P
Sbjct: 182 LAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDPSQVYELLEKDYRMERP- 232
Query: 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
+G + E+ +C +P RP+ I Q
Sbjct: 233 ---EGCPEKVYELMRACWQWNPSDRPSFAEIHQ 262
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 32/202 (15%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
A+ DF+ +G G+ G+VY A + +F+ K ++ + + E+E + +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------------ 520
RH NI++ YG+ + LI EY G++ L + +E
Sbjct: 66 RHPNILRLYGYFHDSTRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 125
Query: 521 ------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------Y 568
DI +N+LL + ++DFG + + SS +AL GT Y+ P+ +
Sbjct: 126 SKKVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRAALCGTLDYLPPEMIEGRMH 183
Query: 569 RKKCDVYSFRVLALEVIKGKHP 590
+K D++S VL E + GK P
Sbjct: 184 DEKVDLWSLGVLCYEFLVGKPP 205
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 124/268 (46%), Gaps = 55/268 (20%)
Query: 429 IGSGRHGSVYRAEL--PSKE--FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG+G G V R L P K+ +A+K Q ++EF +E + + H NI+
Sbjct: 24 IGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQ---RREFLSEASIMGQFEHPNII 80
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-NDAA--------------------AE---- 519
+ G +++ +++ E+++ G+L + L ND AE
Sbjct: 81 RLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSYV 140
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN---WSALVGT--YRYVAPD---YRK- 570
D++++N+L++ VSDFG+++FL+ +SS+ S+L G R+ AP+ +RK
Sbjct: 141 HRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTETSSLGGKIPIRWTAPEAIAFRKF 200
Query: 571 --KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627
D +S+ ++ EV+ G+ P +S + VIN +++ D RLPPP PD L
Sbjct: 201 TSASDAWSYGIVMWEVMSFGERPYWDMS----NQDVINA-IEQ--DYRLPPP-PDCPTSL 252
Query: 628 ISIMEVAFSCLDVSPESRPTMQTITQQL 655
+M C +RP + L
Sbjct: 253 HQLM---LDCWQKDRNARPRFPQVVSAL 277
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 120/268 (44%), Gaps = 55/268 (20%)
Query: 429 IGSGRHGSVYRA--ELPSKE--FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG+G G V +LP K F+A+K S Q +++F +E + + H N++
Sbjct: 15 IGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQ---RRDFLSEASIMGQFDHPNVI 71
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNL-SNDAAAEELD--------------------- 522
G + + ++I E+++ GSL + L ND +
Sbjct: 72 HLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYV 131
Query: 523 ---ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN---WSALVGT--YRYVAPD---YRK- 570
++++N+L++ VSDFG+++FL+ D+S+ SAL G R+ AP+ YRK
Sbjct: 132 HRALAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKF 191
Query: 571 --KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627
DV+S+ ++ EV+ G+ P ++ + VIN +++ D RLPPP D L
Sbjct: 192 TSASDVWSYGIVMWEVMSYGERPYWDMT----NQDVINA-IEQ--DYRLPPPM-DCPSAL 243
Query: 628 ISIMEVAFSCLDVSPESRPTMQTITQQL 655
+M C RP I L
Sbjct: 244 HQLM---LDCWQKDRNHRPKFGQIVNTL 268
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 23 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 80
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 81 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 140
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS + L GT Y+ P+
Sbjct: 141 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGR 198
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 199 MHDEKVDLWSLGVLCYEFLVGKPP 222
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 68
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 69 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 128
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS + L GT Y+ P+
Sbjct: 129 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEXIEGR 186
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 187 XHDEKVDLWSLGVLCYEFLVGKPP 210
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 117/279 (41%), Gaps = 53/279 (18%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKF---NSPLPSDQIADQKEFFAEIEA 474
A N+ + + IG G G V++ L K +A+K +S ++ I +EF E+
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 475 LTKIRHRNIVKFYGF-------------CSHARHSILIYEYLKRGSLATNLSNDAAAE-- 519
++ + H NIVK YG C H +L + + S+ L D A
Sbjct: 77 MSNLNHPNIVKLYGLMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIE 136
Query: 520 ----------ELDISSKNVLLDLEHK-----AHVSDFGIAKFLKPDSSNWSALVGTYRYV 564
D+ S N+ L + A V+DFG + + + S L+G ++++
Sbjct: 137 YMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGTS---QQSVHSVSGLLGNFQWM 193
Query: 565 APD--------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRL 616
AP+ Y +K D YSF ++ ++ G+ P F INM +E L P +
Sbjct: 194 APETIGAEEESYTEKADTYSFAMILYTILTGEGP--FDEYSYGKIKFINMIREEGLRPTI 251
Query: 617 PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
P P +L +++E+ C P+ RP I ++L
Sbjct: 252 PEDCPP---RLRNVIEL---CWSGDPKKRPHFSYIVKEL 284
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 60/239 (25%)
Query: 465 QKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL---------------A 509
Q+ F E++ + + H N++KF G + I EY+K G+L
Sbjct: 51 QRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQR 110
Query: 510 TNLSNDAAAE----------ELDISSKNVLLDLEHKAHVSDFGIAKFL------------ 547
+ + D A+ D++S N L+ V+DFG+A+ +
Sbjct: 111 VSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRS 170
Query: 548 --KPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSS--- 596
KPD +VG ++AP+ Y +K DV+SF ++ E+I G V++
Sbjct: 171 LKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEII------GRVNADPD 224
Query: 597 ILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
LP + + LD PP P S + C D+ PE RP+ + L
Sbjct: 225 YLPRTMDFGLNVRGFLDRYCPPNCPP------SFFPITVRCCDLDPEKRPSFVKLEHWL 277
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 63
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 64 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 123
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS + L GT Y+ P+
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTDLCGTLDYLPPEMIEGR 181
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 182 MHDEKVDLWSLGVLCYEFLVGKPP 205
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 66
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 67 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 126
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS L GT Y+ P+
Sbjct: 127 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRDDLCGTLDYLPPEMIEGR 184
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 185 MHDEKVDLWSLGVLCYEFLVGKPP 208
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 68
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 69 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 128
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS + L GT Y+ P+
Sbjct: 129 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTDLCGTLDYLPPEMIEGR 186
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 187 MHDEKVDLWSLGVLCYEFLVGKPP 210
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 64
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 65 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 124
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS L GT Y+ P+
Sbjct: 125 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRDTLCGTLDYLPPEMIEGR 182
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 183 MHDEKVDLWSLGVLCYEFLVGKPP 206
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 64
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 65 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 124
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS + L GT Y+ P+
Sbjct: 125 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTDLCGTLDYLPPEMIEGR 182
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 183 MHDEKVDLWSLGVLCYEFLVGKPP 206
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 63
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 64 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 123
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS + L GT Y+ P+
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTDLCGTLDYLPPEMIEGR 181
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 182 MHDEKVDLWSLGVLCYEFLVGKPP 205
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 63
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 64 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 123
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS L GT Y+ P+
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRXXLCGTLDYLPPEMIEGR 181
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 182 MHDEKVDLWSLGVLCYEFLVGKPP 205
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 97/223 (43%), Gaps = 53/223 (23%)
Query: 429 IGSGRHGSV--YRAELPSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IGSG G V R +P + + A+K + Q +++F +E + + H NI+
Sbjct: 57 IGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQ---RRDFLSEASIMGQFDHPNII 113
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-------------------------NDAAAE 519
+ G + R ++++ EY++ GSL T L +D
Sbjct: 114 RLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYV 173
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRK 570
D++++NVL+D VSDFG+++ L+ D G R+ AP+ +
Sbjct: 174 HRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAXTTTGGKIPIRWTAPEAIAFRTFSS 233
Query: 571 KCDVYSFRVLALEVIK-GKHP------RGFVSSI-----LPSP 601
DV+SF V+ EV+ G+ P R +SS+ LP+P
Sbjct: 234 ASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGYRLPAP 276
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 66
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 67 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 126
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS L GT Y+ P+
Sbjct: 127 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRXXLCGTLDYLPPEMIEGR 184
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 185 MHDEKVDLWSLGVLCYEFLVGKPP 208
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 8 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 65
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 66 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 125
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS L GT Y+ P+
Sbjct: 126 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRXXLCGTLDYLPPEMIEGR 183
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 184 MHDEKVDLWSLGVLCYEFLVGKPP 207
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L ++ + + E+E +
Sbjct: 32 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQL--EKAGVEHQLRREVEIQS 89
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 90 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 149
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS L GT Y+ P+
Sbjct: 150 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRDDLCGTLDYLPPEMIEGR 207
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 208 MHDEKVDLWSLGVLCYEFLVGKPP 231
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 115/273 (42%), Gaps = 63/273 (23%)
Query: 429 IGSGRHGSVYRAEL--PSKEFLAVKKFNSPLPSDQIADQKE-FFAEIEALTKI-RHRNIV 484
+G+G G V A KE +K L S AD+KE +E++ ++ + +H NIV
Sbjct: 46 LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIV 105
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAE---------EL-------------- 521
G C+H ++I EY G L L A A+ EL
Sbjct: 106 NLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDKEDGRPLELRDLLHFSSQVAQGM 165
Query: 522 -----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR----YVAP 566
D++++NVLL H A + DFG+A+ + DS+ + G R ++AP
Sbjct: 166 AFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSN--YIVKGNARLPVKWMAP 223
Query: 567 D------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV-INMRLDEMLDPRLPPP 619
+ Y + DV+S+ +L E+ F + P P + +N + +++
Sbjct: 224 ESIFDCVYTVQSDVWSYGILLWEI--------FSLGLNPYPGILVNSKFYKLVKDGYQMA 275
Query: 620 SPDVQGK-LISIMEVAFSCLDVSPESRPTMQTI 651
P K + SIM+ +C + P RPT Q I
Sbjct: 276 QPAFAPKNIYSIMQ---ACWALEPTHRPTFQQI 305
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 64
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 65 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 124
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + SS + L GT Y+ P+
Sbjct: 125 CHSKRVIHRDIKPENLLLGSAGELKIADFGWS--CHAPSSRRTTLSGTLDYLPPEMIEGR 182
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 183 MHDEKVDLWSLGVLCYEFLVGKPP 206
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 66
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 67 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 126
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + +++FG + + SS + L GT Y+ P+
Sbjct: 127 CHSKRVIHRDIKPENLLLGSAGELKIANFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGR 184
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 185 MHDEKVDLWSLGVLCYEFLVGKPP 208
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 115/266 (43%), Gaps = 53/266 (19%)
Query: 429 IGSGRHGSVY--RAELPSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G+G G V R +LPSK+ + A+K Q +++F E + + H NI+
Sbjct: 53 VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHPNII 109
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-------------------------NDAAAE 519
+ G + ++ +++ EY++ GSL + L +D
Sbjct: 110 RLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYV 169
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK--- 570
D++++N+L++ VSDFG+A+ L+ D G R+ +P+ YRK
Sbjct: 170 HRDLAARNILINSNLVCKVSDFGLARVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTS 229
Query: 571 KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
DV+S+ ++ EV+ G+ P +S + VI +DE RLPPP D L
Sbjct: 230 ASDVWSYGIVLWEVMSYGERPYWEMS----NQDVIKA-VDEGY--RLPPPM-DCPAALYQ 281
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+M C +RP + I L
Sbjct: 282 LM---LDCWQKDRNNRPKFEQIVSIL 304
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 97/223 (43%), Gaps = 53/223 (23%)
Query: 429 IGSGRHGSV--YRAELPSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IGSG G V R +P + + A+K + Q +++F +E + + H NI+
Sbjct: 57 IGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQ---RRDFLSEASIMGQFDHPNII 113
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-------------------------NDAAAE 519
+ G + R ++++ EY++ GSL T L +D
Sbjct: 114 RLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYV 173
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRK 570
D++++NVL+D VSDFG+++ L+ D G R+ AP+ +
Sbjct: 174 HRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSS 233
Query: 571 KCDVYSFRVLALEVIK-GKHP------RGFVSSI-----LPSP 601
DV+SF V+ EV+ G+ P R +SS+ LP+P
Sbjct: 234 ASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGYRLPAP 276
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 89/204 (43%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
+ DFD +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 10 TLEDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQ--LRREVEIQS 67
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 68 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQRTATYITELANALSY 127
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS + L GT Y+ P+
Sbjct: 128 CHSKRVIHRDIKPENLLLGSNGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGR 185
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + G P
Sbjct: 186 MHDEKVDLWSLGVLCYEFLVGMPP 209
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 115/273 (42%), Gaps = 63/273 (23%)
Query: 429 IGSGRHGSVYRAEL--PSKEFLAVKKFNSPLPSDQIADQKE-FFAEIEALTKI-RHRNIV 484
+G+G G V A KE +K L S AD+KE +E++ ++ + +H NIV
Sbjct: 54 LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIV 113
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAE---------EL-------------- 521
G C+H ++I EY G L L A A+ EL
Sbjct: 114 NLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDKEDGRPLELRDLLHFSSQVAQGM 173
Query: 522 -----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR----YVAP 566
D++++NVLL H A + DFG+A+ + DS+ + G R ++AP
Sbjct: 174 AFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSN--YIVKGNARLPVKWMAP 231
Query: 567 D------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV-INMRLDEMLDPRLPPP 619
+ Y + DV+S+ +L E+ F + P P + +N + +++
Sbjct: 232 ESIFDCVYTVQSDVWSYGILLWEI--------FSLGLNPYPGILVNSKFYKLVKDGYQMA 283
Query: 620 SPDVQGK-LISIMEVAFSCLDVSPESRPTMQTI 651
P K + SIM+ +C + P RPT Q I
Sbjct: 284 QPAFAPKNIYSIMQ---ACWALEPTHRPTFQQI 313
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
A+ DF+ +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 8 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQS 65
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 66 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 125
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + +++FG + + SS + L GT Y+ P+
Sbjct: 126 CHSKRVIHRDIKPENLLLGSAGELKIANFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGR 183
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + GK P
Sbjct: 184 MHDEKVDLWSLGVLCYEFLVGKPP 207
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 117/279 (41%), Gaps = 53/279 (18%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKF---NSPLPSDQIADQKEFFAEIEA 474
A N+ + + IG G G V++ L K +A+K +S ++ I +EF E+
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 475 LTKIRHRNIVKFYGF-------------CSHARHSILIYEYLKRGSLATNLSNDAAAE-- 519
++ + H NIVK YG C H +L + + S+ L D A
Sbjct: 77 MSNLNHPNIVKLYGLMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIE 136
Query: 520 ----------ELDISSKNVLLDLEHK-----AHVSDFGIAKFLKPDSSNWSALVGTYRYV 564
D+ S N+ L + A V+DF ++ + + S L+G ++++
Sbjct: 137 YMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFSLS---QQSVHSVSGLLGNFQWM 193
Query: 565 APD--------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRL 616
AP+ Y +K D YSF ++ ++ G+ P F INM +E L P +
Sbjct: 194 APETIGAEEESYTEKADTYSFAMILYTILTGEGP--FDEYSYGKIKFINMIREEGLRPTI 251
Query: 617 PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
P P +L +++E+ C P+ RP I ++L
Sbjct: 252 PEDCPP---RLRNVIEL---CWSGDPKKRPHFSYIVKEL 284
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 113/271 (41%), Gaps = 57/271 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
D K+ +G G++G VY +AVK + + +EF E + +I+
Sbjct: 32 TDITMKHKLGGGQYGEVYVGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEIK 86
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------ATNLSNDAAAE 519
H N+V+ G C+ ++ EY+ G+L AT +S +A E
Sbjct: 87 HPNLVQLLGVCTLEPPFYIVTEYMPYGNLLDYLRECNREEVTAVVLLYMATQIS--SAME 144
Query: 520 EL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD- 567
L D++++N L+ H V+DFG+++ + D+ ++A G ++ AP+
Sbjct: 145 YLEKKNFIHRDLAARNCLVGENHVVKVADFGLSRLMTGDT--YTAHAGAKFPIKWTAPES 202
Query: 568 -----YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622
+ K DV++F VL E+ + P P + ++ ++L+ P
Sbjct: 203 LAYNTFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDLSQVYDLLEKGYRMEQP- 253
Query: 623 VQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
+G + E+ +C SP RP+ Q
Sbjct: 254 -EGCPPKVYELMRACWKWSPADRPSFAETHQ 283
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 115/266 (43%), Gaps = 53/266 (19%)
Query: 429 IGSGRHGSVY--RAELPSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G+G G V R +LPSK+ + A+K Q +++F E + + H NI+
Sbjct: 41 VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHPNII 97
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-------------------------NDAAAE 519
+ G + ++ +++ EY++ GSL + L +D
Sbjct: 98 RLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYV 157
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK--- 570
D++++N+L++ VSDFG+++ L+ D G R+ +P+ YRK
Sbjct: 158 HRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTS 217
Query: 571 KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
DV+S+ ++ EV+ G+ P +S + VI +DE RLPPP D L
Sbjct: 218 ASDVWSYGIVLWEVMSYGERPYWEMS----NQDVIKA-VDEGY--RLPPPM-DCPAALYQ 269
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+M C +RP + I L
Sbjct: 270 LM---LDCWQKDRNNRPKFEQIVSIL 292
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 115/266 (43%), Gaps = 53/266 (19%)
Query: 429 IGSGRHGSVY--RAELPSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G+G G V R +LPSK+ + A+K Q +++F E + + H NI+
Sbjct: 24 VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHPNII 80
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-------------------------NDAAAE 519
+ G + ++ +++ EY++ GSL + L +D
Sbjct: 81 RLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYV 140
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK--- 570
D++++N+L++ VSDFG+++ L+ D G R+ +P+ YRK
Sbjct: 141 HRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTS 200
Query: 571 KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
DV+S+ ++ EV+ G+ P +S + VI +DE RLPPP D L
Sbjct: 201 ASDVWSYGIVLWEVMSYGERPYWEMS----NQDVIKA-VDEGY--RLPPPM-DCPAALYQ 252
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+M C +RP + I L
Sbjct: 253 LM---LDCWQKDRNNRPKFEQIVSIL 275
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKK-FNSPLPSDQIADQKEFFAEIEALT 476
+ DFD +G G+ G+VY A E SK LA+K F + L + Q E+E +
Sbjct: 10 TLEDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQ--LRREVEIQS 67
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 68 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQRTATYITELANALSY 127
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL + ++DFG + + SS L GT Y+ P+
Sbjct: 128 CHSKRVIHRDIKPENLLLGSNGELKIADFGWS--VHAPSSRRDTLCGTLDYLPPEMIEGR 185
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++S VL E + G P
Sbjct: 186 MHDEKVDLWSLGVLCYEFLVGMPP 209
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 115/266 (43%), Gaps = 53/266 (19%)
Query: 429 IGSGRHGSVY--RAELPSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G+G G V R +LPSK+ + A+K Q +++F E + + H NI+
Sbjct: 53 VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHPNII 109
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-------------------------NDAAAE 519
+ G + ++ +++ EY++ GSL + L +D
Sbjct: 110 RLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYV 169
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK--- 570
D++++N+L++ VSDFG+++ L+ D G R+ +P+ YRK
Sbjct: 170 HRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTS 229
Query: 571 KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
DV+S+ ++ EV+ G+ P +S + VI +DE RLPPP D L
Sbjct: 230 ASDVWSYGIVLWEVMSYGERPYWEMS----NQDVIKA-VDEGY--RLPPPM-DCPAALYQ 281
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+M C +RP + I L
Sbjct: 282 LM---LDCWQKDRNNRPKFEQIVSIL 304
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 115/266 (43%), Gaps = 53/266 (19%)
Query: 429 IGSGRHGSVY--RAELPSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G+G G V R +LPSK+ + A+K Q +++F E + + H NI+
Sbjct: 51 VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHPNII 107
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-------------------------NDAAAE 519
+ G + ++ +++ EY++ GSL + L +D
Sbjct: 108 RLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYV 167
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK--- 570
D++++N+L++ VSDFG+++ L+ D G R+ +P+ YRK
Sbjct: 168 HRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTS 227
Query: 571 KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
DV+S+ ++ EV+ G+ P +S + VI +DE RLPPP D L
Sbjct: 228 ASDVWSYGIVLWEVMSYGERPYWEMS----NQDVIKA-VDEGY--RLPPPM-DCPAALYQ 279
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+M C +RP + I L
Sbjct: 280 LM---LDCWQKDRNNRPKFEQIVSIL 302
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 115/266 (43%), Gaps = 53/266 (19%)
Query: 429 IGSGRHGSVY--RAELPSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G+G G V R +LPSK+ + A+K Q +++F E + + H NI+
Sbjct: 53 VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHPNII 109
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-------------------------NDAAAE 519
+ G + ++ +++ EY++ GSL + L +D
Sbjct: 110 RLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYV 169
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK--- 570
D++++N+L++ VSDFG+++ L+ D G R+ +P+ YRK
Sbjct: 170 HRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTS 229
Query: 571 KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
DV+S+ ++ EV+ G+ P +S + VI +DE RLPPP D L
Sbjct: 230 ASDVWSYGIVLWEVMSYGERPYWEMS----NQDVIKA-VDEGY--RLPPPM-DCPAALYQ 281
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+M C +RP + I L
Sbjct: 282 LM---LDCWQKDRNNRPKFEQIVSIL 304
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 115/266 (43%), Gaps = 53/266 (19%)
Query: 429 IGSGRHGSVY--RAELPSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G+G G V R +LPSK+ + A+K Q +++F E + + H NI+
Sbjct: 53 VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHPNII 109
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-------------------------NDAAAE 519
+ G + ++ +++ EY++ GSL + L +D
Sbjct: 110 RLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYV 169
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK--- 570
D++++N+L++ VSDFG+++ L+ D G R+ +P+ YRK
Sbjct: 170 HRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTS 229
Query: 571 KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
DV+S+ ++ EV+ G+ P +S + VI +DE RLPPP D L
Sbjct: 230 ASDVWSYGIVLWEVMSYGERPYWEMS----NQDVIKA-VDEGY--RLPPPM-DCPAALYQ 281
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+M C +RP + I L
Sbjct: 282 LM---LDCWQKDRNNRPKFEQIVSIL 304
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 115/266 (43%), Gaps = 53/266 (19%)
Query: 429 IGSGRHGSVY--RAELPSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G+G G V R +LPSK+ + A+K Q +++F E + + H NI+
Sbjct: 53 VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHPNII 109
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-------------------------NDAAAE 519
+ G + ++ +++ EY++ GSL + L +D
Sbjct: 110 RLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYV 169
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK--- 570
D++++N+L++ VSDFG+++ L+ D G R+ +P+ YRK
Sbjct: 170 HRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTS 229
Query: 571 KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
DV+S+ ++ EV+ G+ P +S + VI +DE RLPPP D L
Sbjct: 230 ASDVWSYGIVLWEVMSYGERPYWEMS----NQDVIKA-VDEGY--RLPPPM-DCPAALYQ 281
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+M C +RP + I L
Sbjct: 282 LM---LDCWQKDRNNRPKFEQIVSIL 304
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 118/294 (40%), Gaps = 64/294 (21%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
D EI R + K +G G G V+ +A+K S + F E
Sbjct: 8 DAWEIPRESLRLEVK--LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA-----FLQE 60
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL---------------------AT 510
+ + K+RH +V+ Y S I + EY+ +GSL A
Sbjct: 61 AQVMKKLRHEKLVQLYAVVSEEPIYI-VTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQ 119
Query: 511 NLSNDAAAEEL-----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YR 562
S A E + D+ + N+L+ V+DFG+A+ + + + W+A G +
Sbjct: 120 IASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLI--EDNEWTARQGAKFPIK 177
Query: 563 YVAPD------YRKKCDVYSFRVLALEV-IKGKHPRGFVSSILPSPSVINMRLDEMLDP- 614
+ AP+ + K DV+SF +L E+ KG+ +P P ++N + + ++
Sbjct: 178 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR---------VPYPGMVNREVLDQVERG 228
Query: 615 -RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
R+P P P+ L +M C PE RPT + + F YF+ P
Sbjct: 229 YRMPCP-PECPESLHDLM---CQCWRKEPEERPTFEYLQA---FLEDYFTSTEP 275
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 114/266 (42%), Gaps = 53/266 (19%)
Query: 429 IGSGRHGSVY--RAELPSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G+G G V R +LPSK+ + A+K Q +++F E + + H NI+
Sbjct: 53 VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHPNII 109
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-------------------------NDAAAE 519
+ G + ++ +++ EY++ GSL + L +D
Sbjct: 110 RLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYV 169
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK--- 570
D++++N+L++ VSDFG+ + L+ D G R+ +P+ YRK
Sbjct: 170 HRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTS 229
Query: 571 KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
DV+S+ ++ EV+ G+ P +S + VI +DE RLPPP D L
Sbjct: 230 ASDVWSYGIVLWEVMSYGERPYWEMS----NQDVIKA-VDEGY--RLPPPM-DCPAALYQ 281
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+M C +RP + I L
Sbjct: 282 LM---LDCWQKDRNNRPKFEQIVSIL 304
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 115/266 (43%), Gaps = 53/266 (19%)
Query: 429 IGSGRHGSVY--RAELPSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G+G G V R +LPSK+ + A+K Q +++F E + + H NI+
Sbjct: 53 VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHPNII 109
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-------------------------NDAAAE 519
+ G + ++ +++ EY++ GSL + L +D
Sbjct: 110 RLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGFV 169
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK--- 570
D++++N+L++ VSDFG+++ L+ D G R+ +P+ YRK
Sbjct: 170 HRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTS 229
Query: 571 KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
DV+S+ ++ EV+ G+ P +S + VI +DE RLPPP D L
Sbjct: 230 ASDVWSYGIVLWEVMSYGERPYWEMS----NQDVIKA-VDEGY--RLPPPM-DCPAALYQ 281
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+M C +RP + I L
Sbjct: 282 LM---LDCWQKDRNNRPKFEQIVSIL 304
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 114/275 (41%), Gaps = 58/275 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V+ +A+K S + F E + + K++H +V+ Y
Sbjct: 17 LGNGQFGEVWMGTWNGNTKVAIKTLKPGTMSPE-----SFLEEAQIMKKLKHDKLVQLYA 71
Query: 489 FCSHARHSILIYEYLKRGSL----------ATNLSN--DAAAE--------------ELD 522
S I + EY+ +GSL A L N D AA+ D
Sbjct: 72 VVSEEPIYI-VTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRD 130
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCD 573
+ S N+L+ ++DFG+A+ ++ + +A G ++ AP+ + K D
Sbjct: 131 LRSANILVGNGLICKIADFGLARLIEDNEX--TARQGAKFPIKWTAPEAALYGRFTIKSD 188
Query: 574 VYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
V+SF +L E++ KG+ +P P + N + E ++ P P Q IS+ E
Sbjct: 189 VWSFGILLTELVTKGR---------VPYPGMNNREVLEQVERGYRMPCP--QDCPISLHE 237
Query: 633 VAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
+ C PE RPT + + F YF+ P
Sbjct: 238 LMIHCWKKDPEERPTFEYLQS---FLEDYFTATEP 269
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 112/288 (38%), Gaps = 62/288 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
+D++ + IGSG V A P KE +A+K+ N L Q + E EI+A+++
Sbjct: 15 DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRIN--LEKCQTS-MDELLKEIQAMSQCH 71
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------------- 520
H NIV +Y L+ + L GS+ + + A E
Sbjct: 72 HPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVL 131
Query: 521 -------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-----NWSALVGTYR 562
D+ + N+LL + ++DFG++ FL VGT
Sbjct: 132 EGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPC 191
Query: 563 YVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPR 615
++AP+ Y K D++SF + A+E+ G P P V+ + L DP
Sbjct: 192 WMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPY----HKYPPMKVLMLTLQN--DP- 244
Query: 616 LPPPSPDVQGKLI------SIMEVAFSCLDVSPESRPTMQTITQQLLF 657
P VQ K + S ++ CL PE RPT + + F
Sbjct: 245 -PSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLRHKFF 291
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 112/288 (38%), Gaps = 62/288 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
+D++ + IGSG V A P KE +A+K+ N L Q + E EI+A+++
Sbjct: 10 DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRIN--LEKCQTS-MDELLKEIQAMSQCH 66
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------------- 520
H NIV +Y L+ + L GS+ + + A E
Sbjct: 67 HPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVL 126
Query: 521 -------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-----NWSALVGTYR 562
D+ + N+LL + ++DFG++ FL VGT
Sbjct: 127 EGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPC 186
Query: 563 YVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPR 615
++AP+ Y K D++SF + A+E+ G P P V+ + L DP
Sbjct: 187 WMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPY----HKYPPMKVLMLTLQN--DP- 239
Query: 616 LPPPSPDVQGKLI------SIMEVAFSCLDVSPESRPTMQTITQQLLF 657
P VQ K + S ++ CL PE RPT + + F
Sbjct: 240 -PSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLRHKFF 286
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 115/266 (43%), Gaps = 53/266 (19%)
Query: 429 IGSGRHGSVY--RAELPSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G+G G V R +LPSK+ + A+K Q +++F E + + H NI+
Sbjct: 53 VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHPNII 109
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-------------------------NDAAAE 519
+ G + ++ +++ E ++ GSL + L +D A
Sbjct: 110 RLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGAV 169
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK--- 570
D++++N+L++ VSDFG+++ L+ D G R+ +P+ YRK
Sbjct: 170 HRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTS 229
Query: 571 KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
DV+S+ ++ EV+ G+ P +S + VI +DE RLPPP D L
Sbjct: 230 ASDVWSYGIVLWEVMSYGERPYWEMS----NQDVIKA-VDEGY--RLPPPM-DCPAALYQ 281
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+M C +RP + I L
Sbjct: 282 LM---LDCWQKDRNNRPKFEQIVSIL 304
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 122/292 (41%), Gaps = 65/292 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFA 470
DY EI + + +G G G V +A+ +K+ +A+K+ S +++K F
Sbjct: 6 IDYKEI-------EVEEVVGRGAFGVVCKAKWRAKD-VAIKQIESE------SERKAFIV 51
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAEEL--- 521
E+ L+++ H NIVK YG C + L+ EY + GSL A L AA +
Sbjct: 52 ELRQLSRVNHPNIVKLYGACLNP--VCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWC 109
Query: 522 ---------------------DISSKNVLLDLEHKA-HVSDFGIAKFLKPDSSNWSALVG 559
D+ N+LL + DFG A ++ +N G
Sbjct: 110 LQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTN---NKG 166
Query: 560 TYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD 613
+ ++AP+ Y +KCDV+S+ ++ EVI + P + P+ M + +
Sbjct: 167 SAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIG----GPAFRIMW--AVHN 220
Query: 614 PRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYA 665
PP ++ + S+M C P RP+M+ I + + + YF A
Sbjct: 221 GTRPPLIKNLPKPIESLMT---RCWSKDPSQRPSMEEIVKIMTHLMRYFPGA 269
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 110/267 (41%), Gaps = 55/267 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IGSG G+VY+ + +AVK N P+ Q + F E+ L K RH NI+ F G
Sbjct: 32 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 87
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-------------------------DI 523
+ + + +I + ++ + SL +L E+ D+
Sbjct: 88 YSTKPQLAI-VTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDL 146
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA------LVGTYRYVAPD---------Y 568
S N+ L ++ + DFG+A + S WS L G+ ++AP+ Y
Sbjct: 147 KSNNIFLHEDNTVKIGDFGLA----TEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPY 202
Query: 569 RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
+ DVY+F ++ E++ G+ P S+I +I M L P L + ++
Sbjct: 203 SFQSDVYAFGIVLYELMTGQLP---YSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMK 259
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQL 655
+M CL + RP+ I ++
Sbjct: 260 RLMA---ECLKKKRDERPSFPRILAEI 283
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 122/292 (41%), Gaps = 65/292 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFA 470
DY EI + + +G G G V +A+ +K+ +A+K+ S +++K F
Sbjct: 5 IDYKEI-------EVEEVVGRGAFGVVCKAKWRAKD-VAIKQIESE------SERKAFIV 50
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAEEL--- 521
E+ L+++ H NIVK YG C + L+ EY + GSL A L AA +
Sbjct: 51 ELRQLSRVNHPNIVKLYGACLNP--VCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWC 108
Query: 522 ---------------------DISSKNVLLDLEHKA-HVSDFGIAKFLKPDSSNWSALVG 559
D+ N+LL + DFG A ++ +N G
Sbjct: 109 LQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTN---NKG 165
Query: 560 TYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD 613
+ ++AP+ Y +KCDV+S+ ++ EVI + P + P+ M + +
Sbjct: 166 SAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIG----GPAFRIMW--AVHN 219
Query: 614 PRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYA 665
PP ++ + S+M C P RP+M+ I + + + YF A
Sbjct: 220 GTRPPLIKNLPKPIESLMT---RCWSKDPSQRPSMEEIVKIMTHLMRYFPGA 268
>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439
pdb|2VRX|B Chain B, Structure Of Aurora B Kinase In Complex With Zm447439
Length = 285
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 97/243 (39%), Gaps = 42/243 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKK--FNSPLPSDQIADQKEFFAEIEALT 476
I+DFD +G G+ G+VY A +F+ K F S L + + Q EIE +
Sbjct: 13 TIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQ--LRREIEIQS 70
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ Y + + L+ E+ RG L L +E
Sbjct: 71 HLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHY 130
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+L+ + + ++DFG + + S + GT Y+ P+
Sbjct: 131 CHERKVIHRDIKPENLLMGYKGELKIADFGWS--VHAPSLRRRXMCGTLDYLPPEMIEGK 188
Query: 568 -YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626
+ +K D++ VL E + G P S ++N +D + PP D
Sbjct: 189 THDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVN------VDLKFPPFLSDGSKD 242
Query: 627 LIS 629
LIS
Sbjct: 243 LIS 245
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 109/267 (40%), Gaps = 55/267 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IGSG G+VY+ + +AVK N P+ Q + F E+ L K RH NI+ F G
Sbjct: 32 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 87
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-------------------------DI 523
+ S A ++ ++ + SL +L E+ D+
Sbjct: 88 Y-STAPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDL 146
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA------LVGTYRYVAPD---------Y 568
S N+ L ++ + DFG+A + S WS L G+ ++AP+ Y
Sbjct: 147 KSNNIFLHEDNTVKIGDFGLA----TEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPY 202
Query: 569 RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
+ DVY+F ++ E++ G+ P S+I +I M L P L + ++
Sbjct: 203 SFQSDVYAFGIVLYELMTGQLP---YSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMK 259
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQL 655
+M CL + RP+ I ++
Sbjct: 260 RLMA---ECLKKKRDERPSFPRILAEI 283
>pdb|2BFX|A Chain A, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2BFX|B Chain B, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2VGP|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGP|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGO|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|2VGO|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|3ZTX|A Chain A, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen.
pdb|3ZTX|B Chain B, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen
Length = 284
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 97/243 (39%), Gaps = 42/243 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKK--FNSPLPSDQIADQKEFFAEIEALT 476
I+DFD +G G+ G+VY A +F+ K F S L + + Q EIE +
Sbjct: 12 TIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQ--LRREIEIQS 69
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ Y + + L+ E+ RG L L +E
Sbjct: 70 HLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHY 129
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+L+ + + ++DFG + + S + GT Y+ P+
Sbjct: 130 CHERKVIHRDIKPENLLMGYKGELKIADFGWS--VHAPSLRRRXMCGTLDYLPPEMIEGK 187
Query: 568 -YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626
+ +K D++ VL E + G P S ++N +D + PP D
Sbjct: 188 THDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVN------VDLKFPPFLSDGSKD 241
Query: 627 LIS 629
LIS
Sbjct: 242 LIS 244
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 109/267 (40%), Gaps = 55/267 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IGSG G+VY+ + +AVK N P+ Q + F E+ L K RH NI+ F G
Sbjct: 20 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 75
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-------------------------DI 523
+ + + +I + ++ + SL +L E+ D+
Sbjct: 76 YSTKPQLAI-VTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDL 134
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA------LVGTYRYVAPD---------Y 568
S N+ L ++ + DFG+A S WS L G+ ++AP+ Y
Sbjct: 135 KSNNIFLHEDNTVKIGDFGLATV----KSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPY 190
Query: 569 RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
+ DVY+F ++ E++ G+ P S+I +I M L P L + ++
Sbjct: 191 SFQSDVYAFGIVLYELMTGQLP---YSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMK 247
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQL 655
+M CL + RP+ I ++
Sbjct: 248 RLMA---ECLKKKRDERPSFPRILAEI 271
>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
Length = 284
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 97/243 (39%), Gaps = 42/243 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKK--FNSPLPSDQIADQKEFFAEIEALT 476
I+DFD +G G+ G+VY A +F+ K F S L + + Q EIE +
Sbjct: 12 TIDDFDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQ--LRREIEIQS 69
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH NI++ Y + + L+ E+ RG L L +E
Sbjct: 70 HLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHY 129
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+L+ + + ++DFG + + S + GT Y+ P+
Sbjct: 130 CHERKVIHRDIKPENLLMGYKGELKIADFGWS--VHAPSLRRRXMCGTLDYLPPEMIEGK 187
Query: 568 -YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626
+ +K D++ VL E + G P S ++N +D + PP D
Sbjct: 188 THDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVN------VDLKFPPFLSDGSKD 241
Query: 627 LIS 629
LIS
Sbjct: 242 LIS 244
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 110/264 (41%), Gaps = 55/264 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V + + +A+K S+ EF E + + + H +V+ YG
Sbjct: 23 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSED-----EFIEEAKVMMNLSHEKLVQLYG 77
Query: 489 FCSHARHSILIYEYLKRGSLATNLSND-----------------AAAEEL--------DI 523
C+ R +I EY+ G L L A E L D+
Sbjct: 78 VCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDL 137
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCDV 574
+++N L++ + VSDFG+++++ D +++ VG+ R+ P+ + K D+
Sbjct: 138 AARNCLVNDQGVVKVSDFGLSRYVLDD--EYTSSVGSKFPVRWSPPEVLMYSKFSSKSDI 195
Query: 575 YSFRVLALEVIK-GKHP-RGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
++F VL E+ GK P F +S +RL P L K+ +IM
Sbjct: 196 WAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRL---YRPHLASE------KVYTIM- 245
Query: 633 VAFSCLDVSPESRPTMQTITQQLL 656
+SC + RPT + + +L
Sbjct: 246 --YSCWHEKADERPTFKILLSNIL 267
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 115/277 (41%), Gaps = 67/277 (24%)
Query: 429 IGSGRHGSVYRAEL--PSKEFLAVKKFNSPLPSDQIADQKE-FFAEIEALTKI-RHRNIV 484
+G+G G V A KE +K L S AD+KE +E++ ++ + +H NIV
Sbjct: 54 LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIV 113
Query: 485 KFYGFCSHARHSILIYEYLKRGSL---------------ATNLSNDAAAEE--------- 520
G C+H ++I EY G L A ++N A+
Sbjct: 114 NLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQV 173
Query: 521 --------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR---- 562
D++++NVLL H A + DFG+A+ + DS+ + G R
Sbjct: 174 AQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSN--YIVKGNARLPVK 231
Query: 563 YVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV-INMRLDEMLDPR 615
++AP+ Y + DV+S+ +L E+ F + P P + +N + +++
Sbjct: 232 WMAPESIFDCVYTVQSDVWSYGILLWEI--------FSLGLNPYPGILVNSKFYKLVKDG 283
Query: 616 LPPPSPDVQGK-LISIMEVAFSCLDVSPESRPTMQTI 651
P K + SIM+ +C + P RPT Q I
Sbjct: 284 YQMAQPAFAPKNIYSIMQ---ACWALEPTHRPTFQQI 317
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 119/294 (40%), Gaps = 64/294 (21%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
D EI R + K +G G G V+ +A+K S + F E
Sbjct: 11 DAWEIPRESLRLEVK--LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA-----FLQE 63
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN------------DAAAE 519
+ + K+RH +V+ Y S I+I EY+ +GSL L D AA+
Sbjct: 64 AQVMKKLRHEKLVQLYAVVSEEPIYIVI-EYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQ 122
Query: 520 --------------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YR 562
D+ + N+L+ V+DFG+A+ + + + ++A G +
Sbjct: 123 IASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIK 180
Query: 563 YVAPD------YRKKCDVYSFRVLALEV-IKGKHPRGFVSSILPSPSVINMRLDEMLDP- 614
+ AP+ + K DV+SF +L E+ KG+ +P P ++N + + ++
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR---------VPYPGMVNREVLDQVERG 231
Query: 615 -RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
R+P P P+ L +M C PE RPT + + F YF+ P
Sbjct: 232 YRMPCP-PECPESLHDLM---CQCWRKDPEERPTFEYLQA---FLEDYFTSTEP 278
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 110/264 (41%), Gaps = 55/264 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V + + +A+K S+ EF E + + + H +V+ YG
Sbjct: 17 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSED-----EFIEEAKVMMNLSHEKLVQLYG 71
Query: 489 FCSHARHSILIYEYLKRGSLATNLSND-----------------AAAEEL--------DI 523
C+ R +I EY+ G L L A E L D+
Sbjct: 72 VCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDL 131
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCDV 574
+++N L++ + VSDFG+++++ D +++ VG+ R+ P+ + K D+
Sbjct: 132 AARNCLVNDQGVVKVSDFGLSRYVLDD--EYTSSVGSKFPVRWSPPEVLMYSKFSSKSDI 189
Query: 575 YSFRVLALEVIK-GKHP-RGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
++F VL E+ GK P F +S +RL P L K+ +IM
Sbjct: 190 WAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRL---YRPHLASE------KVYTIM- 239
Query: 633 VAFSCLDVSPESRPTMQTITQQLL 656
+SC + RPT + + +L
Sbjct: 240 --YSCWHEKADERPTFKILLSNIL 261
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 110/264 (41%), Gaps = 55/264 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V + + +A+K S+ EF E + + + H +V+ YG
Sbjct: 32 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSED-----EFIEEAKVMMNLSHEKLVQLYG 86
Query: 489 FCSHARHSILIYEYLKRGSLATNLSND-----------------AAAEEL--------DI 523
C+ R +I EY+ G L L A E L D+
Sbjct: 87 VCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDL 146
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCDV 574
+++N L++ + VSDFG+++++ D +++ VG+ R+ P+ + K D+
Sbjct: 147 AARNCLVNDQGVVKVSDFGLSRYVLDD--EYTSSVGSKFPVRWSPPEVLMYSKFSSKSDI 204
Query: 575 YSFRVLALEVIK-GKHP-RGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
++F VL E+ GK P F +S +RL P L K+ +IM
Sbjct: 205 WAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRL---YRPHLASE------KVYTIM- 254
Query: 633 VAFSCLDVSPESRPTMQTITQQLL 656
+SC + RPT + + +L
Sbjct: 255 --YSCWHEKADERPTFKILLSNIL 276
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 112/266 (42%), Gaps = 53/266 (19%)
Query: 429 IGSGRHGSVY--RAELPSKE--FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G V R ++P K +A+K + Q +++F +E + + H NI+
Sbjct: 37 IGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQ---RRDFLSEASIMGQFDHPNII 93
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-------------------------NDAAAE 519
G + + ++I EY++ GSL L +D +A
Sbjct: 94 HLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSAV 153
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK--- 570
D++++N+L++ VSDFG+++ L+ D G R+ AP+ YRK
Sbjct: 154 HRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTS 213
Query: 571 KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
DV+S+ ++ EV+ G+ P +S + VI ++E RLPPP I+
Sbjct: 214 ASDVWSYGIVMWEVMSYGERPYWDMS----NQDVIKA-IEEGY--RLPPP----MDCPIA 262
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+ ++ C RP I L
Sbjct: 263 LHQLMLDCWQKERSDRPKFGQIVNML 288
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 110/264 (41%), Gaps = 55/264 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V + + +A+K S+ EF E + + + H +V+ YG
Sbjct: 16 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSED-----EFIEEAKVMMNLSHEKLVQLYG 70
Query: 489 FCSHARHSILIYEYLKRGSLATNLSND-----------------AAAEEL--------DI 523
C+ R +I EY+ G L L A E L D+
Sbjct: 71 VCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDL 130
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCDV 574
+++N L++ + VSDFG+++++ D +++ VG+ R+ P+ + K D+
Sbjct: 131 AARNCLVNDQGVVKVSDFGLSRYVLDD--EYTSSVGSKFPVRWSPPEVLMYSKFSSKSDI 188
Query: 575 YSFRVLALEVIK-GKHP-RGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
++F VL E+ GK P F +S +RL P L K+ +IM
Sbjct: 189 WAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRL---YRPHLASE------KVYTIM- 238
Query: 633 VAFSCLDVSPESRPTMQTITQQLL 656
+SC + RPT + + +L
Sbjct: 239 --YSCWHEKADERPTFKILLSNIL 260
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 109/264 (41%), Gaps = 55/264 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V + + +A+K S+ EF E + + + H +V+ YG
Sbjct: 32 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSED-----EFIEEAKVMMNLSHEKLVQLYG 86
Query: 489 FCSHARHSILIYEYLKRGSLATNLSND-----------------AAAEEL--------DI 523
C+ R +I EY+ G L L A E L D+
Sbjct: 87 VCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDL 146
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCDV 574
+++N L++ + VSDFG+++++ D ++ VG+ R+ P+ + K D+
Sbjct: 147 AARNCLVNDQGVVKVSDFGLSRYVLDDEE--TSSVGSKFPVRWSPPEVLMYSKFSSKSDI 204
Query: 575 YSFRVLALEVIK-GKHP-RGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
++F VL E+ GK P F +S +RL P L K+ +IM
Sbjct: 205 WAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRL---YRPHLASE------KVYTIM- 254
Query: 633 VAFSCLDVSPESRPTMQTITQQLL 656
+SC + RPT + + +L
Sbjct: 255 --YSCWHEKADERPTFKILLSNIL 276
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 114/266 (42%), Gaps = 53/266 (19%)
Query: 429 IGSGRHGSVY--RAELPSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G+G G V R +LPSK+ + A+K Q +++F E + + H NI+
Sbjct: 24 VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHPNII 80
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-------------------------NDAAAE 519
+ G + ++ +++ E ++ GSL + L +D
Sbjct: 81 RLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYV 140
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK--- 570
D++++N+L++ VSDFG+++ L+ D G R+ +P+ YRK
Sbjct: 141 HRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTS 200
Query: 571 KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
DV+S+ ++ EV+ G+ P +S + VI +DE RLPPP D L
Sbjct: 201 ASDVWSYGIVLWEVMSYGERPYWEMS----NQDVIKA-VDEGY--RLPPPM-DCPAALYQ 252
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+M C +RP + I L
Sbjct: 253 LM---LDCWQKDRNNRPKFEQIVSIL 275
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 118/294 (40%), Gaps = 64/294 (21%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
D EI R + K +G G G V+ +A+K S + F E
Sbjct: 11 DAWEIPRESLRLEVK--LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA-----FLQE 63
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN------------DAAAE 519
+ + KIRH +V+ Y S I + EY+ +GSL L D AA+
Sbjct: 64 AQVMKKIRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQ 122
Query: 520 --------------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YR 562
D+ + N+L+ V+DFG+A+ + + + ++A G +
Sbjct: 123 IASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIK 180
Query: 563 YVAPD------YRKKCDVYSFRVLALEV-IKGKHPRGFVSSILPSPSVINMRLDEMLDP- 614
+ AP+ + K DV+SF +L E+ KG+ +P P ++N + + ++
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR---------VPYPGMVNREVLDQVERG 231
Query: 615 -RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
R+P P P+ L +M C PE RPT + + F YF+ P
Sbjct: 232 YRMPCP-PECPESLHDLM---CQCWRKDPEERPTFEYLQA---FLEDYFTSTEP 278
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 110/264 (41%), Gaps = 55/264 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V + + +A+K S+ EF E + + + H +V+ YG
Sbjct: 12 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSED-----EFIEEAKVMMNLSHEKLVQLYG 66
Query: 489 FCSHARHSILIYEYLKRGSLATNLSND-----------------AAAEEL--------DI 523
C+ R +I EY+ G L L A E L D+
Sbjct: 67 VCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDL 126
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCDV 574
+++N L++ + VSDFG+++++ D +++ VG+ R+ P+ + K D+
Sbjct: 127 AARNCLVNDQGVVKVSDFGLSRYVLDD--EYTSSVGSKFPVRWSPPEVLMYSKFSSKSDI 184
Query: 575 YSFRVLALEVIK-GKHP-RGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
++F VL E+ GK P F +S +RL P L K+ +IM
Sbjct: 185 WAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRL---YRPHLASE------KVYTIM- 234
Query: 633 VAFSCLDVSPESRPTMQTITQQLL 656
+SC + RPT + + +L
Sbjct: 235 --YSCWHEKADERPTFKILLSNIL 256
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 119/294 (40%), Gaps = 64/294 (21%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
D EI R + K +G G G V+ +A+K S + F E
Sbjct: 11 DAWEIPRESLRLEVK--LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA-----FLQE 63
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN------------DAAAE 519
+ + K+RH +V+ Y S I + EY+ +GSL L D AA+
Sbjct: 64 AQVMKKLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQ 122
Query: 520 --------------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YR 562
D+++ N+L+ V+DFG+A+ + + + ++A G +
Sbjct: 123 IASGMAYVERMNYVHRDLAAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIK 180
Query: 563 YVAPD------YRKKCDVYSFRVLALEV-IKGKHPRGFVSSILPSPSVINMRLDEMLDP- 614
+ AP+ + K DV+SF +L E+ KG+ +P P ++N + + ++
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR---------VPYPGMVNREVLDQVERG 231
Query: 615 -RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
R+P P P+ L +M C PE RPT + + F YF+ P
Sbjct: 232 YRMPCP-PECPESLHDLM---CQCWRKDPEERPTFEYLQA---FLEDYFTSTEP 278
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 114/266 (42%), Gaps = 53/266 (19%)
Query: 429 IGSGRHGSVY--RAELPSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G+G G V R +LPSK+ + A+K Q +++F E + + H NI+
Sbjct: 53 VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHPNII 109
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-------------------------NDAAAE 519
+ G + ++ +++ E ++ GSL + L +D
Sbjct: 110 RLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYV 169
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK--- 570
D++++N+L++ VSDFG+++ L+ D G R+ +P+ YRK
Sbjct: 170 HRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTS 229
Query: 571 KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
DV+S+ ++ EV+ G+ P +S + VI +DE RLPPP D L
Sbjct: 230 ASDVWSYGIVLWEVMSYGERPYWEMS----NQDVIKA-VDEGY--RLPPPM-DCPAALYQ 281
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+M C +RP + I L
Sbjct: 282 LM---LDCWQKDRNNRPKFEQIVSIL 304
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 109/270 (40%), Gaps = 59/270 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKE-FFAEIEALTKIRHRNIVKFY 487
IG G G VYRA E +AVK P + I+ E E + ++H NI+
Sbjct: 15 IGIGGFGKVYRAFWIGDE-VAVKAARHD-PDEDISQTIENVRQEAKLFAMLKHPNIIALR 72
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-------------------------- 521
G C + L+ E+ + G L LS ++
Sbjct: 73 GVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHR 132
Query: 522 DISSKNVLL-------DLEHKA-HVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
D+ S N+L+ DL +K ++DFG+A+ + +A G Y ++AP+
Sbjct: 133 DLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAA--GAYAWMAPEVIRASM 190
Query: 568 YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS--PDVQG 625
+ K DV+S+ VL E++ G+ P + + + V +L LP PS P+
Sbjct: 191 FSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKL------ALPIPSTCPEPFA 244
Query: 626 KLISIMEVAFSCLDVSPESRPTMQTITQQL 655
KL+ C + P SRP+ I QL
Sbjct: 245 KLME------DCWNPDPHSRPSFTNILDQL 268
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 44/206 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRAELPSK-EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
D++ Y IG+G +G + S + L K+ + ++ A+++ +E+ L +++
Sbjct: 6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE--AEKQMLVSEVNLLRELK 63
Query: 480 HRNIVKFYGFCSHARHSIL--IYEYLKRGSLATNLSNDAAAEEL---------------- 521
H NIV++Y ++ L + EY + G LA+ ++ +
Sbjct: 64 HPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLA 123
Query: 522 -----------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYV 564
D+ NV LD + + DFG+A+ L D+S A VGT Y+
Sbjct: 124 LKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYM 183
Query: 565 APD------YRKKCDVYSFRVLALEV 584
+P+ Y +K D++S L E+
Sbjct: 184 SPEQMNRMSYNEKSDIWSLGCLLYEL 209
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 112/277 (40%), Gaps = 67/277 (24%)
Query: 429 IGSGRHGSVYRAEL--PSKEFLAVKKFNSPLPSDQIADQKE-FFAEIEALTKI-RHRNIV 484
+G+G G V A KE +K L S AD+KE +E++ ++ + +H NIV
Sbjct: 54 LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIV 113
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELD---------------------- 522
G C+H ++I EY G L L + E D
Sbjct: 114 NLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTLSTRDLLHFSSQV 173
Query: 523 ----------------ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR---- 562
++++NVLL H A + DFG+A+ + DS+ + G R
Sbjct: 174 AQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSN--YIVKGNARLPVK 231
Query: 563 YVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV-INMRLDEMLDPR 615
++AP+ Y + DV+S+ +L E+ F + P P + +N + +++
Sbjct: 232 WMAPESIFDCVYTVQSDVWSYGILLWEI--------FSLGLNPYPGILVNSKFYKLVKDG 283
Query: 616 LPPPSPDVQGK-LISIMEVAFSCLDVSPESRPTMQTI 651
P K + SIM+ +C + P RPT Q I
Sbjct: 284 YQMAQPAFAPKNIYSIMQ---ACWALEPTHRPTFQQI 317
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 118/294 (40%), Gaps = 64/294 (21%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
D EI R + K +G G G V+ +A+K S + F E
Sbjct: 11 DAWEIPRESLRLEVK--LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA-----FLQE 63
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN------------DAAAE 519
+ + K+RH +V+ Y S I+I EY+ +GSL L D AA+
Sbjct: 64 AQVMKKLRHEKLVQLYAVVSEEPIYIVI-EYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQ 122
Query: 520 --------------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YR 562
D+ + N+L+ V+DFG+A+ ++ + +A G +
Sbjct: 123 IASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEX--TARQGAKFPIK 180
Query: 563 YVAPD------YRKKCDVYSFRVLALEV-IKGKHPRGFVSSILPSPSVINMRLDEMLDP- 614
+ AP+ + K DV+SF +L E+ KG+ +P P ++N + + ++
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR---------VPYPGMVNREVLDQVERG 231
Query: 615 -RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
R+P P P+ L +M C PE RPT + + F YF+ P
Sbjct: 232 YRMPCP-PECPESLHDLM---CQCWRKDPEERPTFEYLQA---FLEDYFTSTEP 278
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 43/203 (21%)
Query: 428 CIGSGRHGSVYRAELPS----KEF-LAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482
IG+G G VY+ L + KE +A+K + Q D F E + + H N
Sbjct: 51 VIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVD---FLGEAGIMGQFSHHN 107
Query: 483 IVKFYGFCSHARHSILIYEYLKRGSLATNLSND----------------AAAEEL----- 521
I++ G S + ++I EY++ G+L L AA +
Sbjct: 108 IIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMN 167
Query: 522 ----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK- 570
D++++N+L++ VSDFG+++ L+ D G R+ AP+ YRK
Sbjct: 168 YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKF 227
Query: 571 --KCDVYSFRVLALEVIK-GKHP 590
DV+SF ++ EV+ G+ P
Sbjct: 228 TSASDVWSFGIVMWEVMTYGERP 250
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 118/294 (40%), Gaps = 64/294 (21%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
D EI R + K +G G G V+ +A+K S + F E
Sbjct: 177 DAWEIPRESLRLEVK--LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA-----FLQE 229
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN------------DAAAE 519
+ + K+RH +V+ Y S I + EY+ +GSL L D AA+
Sbjct: 230 AQVMKKLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQ 288
Query: 520 --------------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YR 562
D+ + N+L+ V+DFG+A+ + + + ++A G +
Sbjct: 289 IASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIK 346
Query: 563 YVAPD------YRKKCDVYSFRVLALEV-IKGKHPRGFVSSILPSPSVINMRLDEMLDP- 614
+ AP+ + K DV+SF +L E+ KG+ +P P ++N + + ++
Sbjct: 347 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR---------VPYPGMVNREVLDQVERG 397
Query: 615 -RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
R+P P P+ L +M C PE RPT + + F YF+ P
Sbjct: 398 YRMPCP-PECPESLHDLM---CQCWRKEPEERPTFEYLQA---FLEDYFTSTEP 444
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 118/294 (40%), Gaps = 64/294 (21%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
D EI R + K +G G G V+ +A+K S + F E
Sbjct: 11 DAWEIPRESLRLEVK--LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA-----FLQE 63
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN------------DAAAE 519
+ + K+RH +V+ Y S I + EY+ +GSL L D AA+
Sbjct: 64 AQVMKKLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQ 122
Query: 520 --------------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YR 562
D+ + N+L+ V+DFG+A+ + + + ++A G +
Sbjct: 123 IASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIK 180
Query: 563 YVAPD------YRKKCDVYSFRVLALEV-IKGKHPRGFVSSILPSPSVINMRLDEMLDP- 614
+ AP+ + K DV+SF +L E+ KG+ +P P ++N + + ++
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR---------VPYPGMVNREVLDQVERG 231
Query: 615 -RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
R+P P P+ L +M C PE RPT + + F YF+ P
Sbjct: 232 YRMPCP-PECPESLHDLM---CQCWRKDPEERPTFEYLQA---FLEDYFTSTEP 278
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 107/267 (40%), Gaps = 55/267 (20%)
Query: 429 IGSGRHGSVY--RAELPSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG+G G V R +LP K L A+K Q +++F E + + H NI+
Sbjct: 30 IGAGEFGEVCSGRLKLPGKRELPVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHPNII 86
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-------------------------NDAAAE 519
G + ++ +++ EY++ GSL T L +D
Sbjct: 87 HLEGVVTKSKPVMIVTEYMENGSLDTFLKKNDGQFTVIQLVGMLRGISAGMKYLSDMGYV 146
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK--- 570
D++++N+L++ VSDFG+++ L+ D G R+ AP+ +RK
Sbjct: 147 HRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAFRKFTS 206
Query: 571 KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP-DVQGKLI 628
DV+S+ ++ EV+ G+ P + N + + ++ PSP D L
Sbjct: 207 ASDVWSYGIVMWEVVSYGERPYW---------EMTNQDVIKAVEEGYRLPSPMDCPAALY 257
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQL 655
+M C SRP I L
Sbjct: 258 QLM---LDCWQKERNSRPKFDEIVNML 281
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 118/294 (40%), Gaps = 64/294 (21%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
D EI R + K +G G G V+ +A+K S + F E
Sbjct: 177 DAWEIPRESLRLEVK--LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA-----FLQE 229
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN------------DAAAE 519
+ + K+RH +V+ Y S I + EY+ +GSL L D AA+
Sbjct: 230 AQVMKKLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQ 288
Query: 520 --------------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YR 562
D+ + N+L+ V+DFG+A+ + + + ++A G +
Sbjct: 289 IASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIK 346
Query: 563 YVAPD------YRKKCDVYSFRVLALEV-IKGKHPRGFVSSILPSPSVINMRLDEMLDP- 614
+ AP+ + K DV+SF +L E+ KG+ +P P ++N + + ++
Sbjct: 347 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR---------VPYPGMVNREVLDQVERG 397
Query: 615 -RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
R+P P P+ L +M C PE RPT + + F YF+ P
Sbjct: 398 YRMPCP-PECPESLHDLM---CQCWRKEPEERPTFEYLQA---FLEDYFTSTEP 444
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 118/294 (40%), Gaps = 64/294 (21%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
D EI R + K +G G G V+ +A+K S + F E
Sbjct: 11 DAWEIPRESLRLEVK--LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA-----FLQE 63
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN------------DAAAE 519
+ + K+RH +V+ Y S I + EY+ +GSL L D AA+
Sbjct: 64 AQVMKKLRHEKLVQLYAVVSEEPIYI-VCEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQ 122
Query: 520 --------------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YR 562
D+ + N+L+ V+DFG+A+ + + + ++A G +
Sbjct: 123 IASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIK 180
Query: 563 YVAPD------YRKKCDVYSFRVLALEV-IKGKHPRGFVSSILPSPSVINMRLDEMLDP- 614
+ AP+ + K DV+SF +L E+ KG+ +P P ++N + + ++
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR---------VPYPGMVNREVLDQVERG 231
Query: 615 -RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
R+P P P+ L +M C PE RPT + + F YF+ P
Sbjct: 232 YRMPCP-PECPESLHDLM---CQCWRKDPEERPTFEYLQA---FLEDYFTSTEP 278
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 118/294 (40%), Gaps = 64/294 (21%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
D EI R + K +G G G V+ +A+K S + F E
Sbjct: 4 DAWEIPRESLRLEVK--LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA-----FLQE 56
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN------------DAAAE 519
+ + K+RH +V+ Y S I + EY+ +GSL L D AA+
Sbjct: 57 AQVMKKLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQ 115
Query: 520 --------------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YR 562
D+ + N+L+ V+DFG+A+ + + + ++A G +
Sbjct: 116 IASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIK 173
Query: 563 YVAPD------YRKKCDVYSFRVLALEV-IKGKHPRGFVSSILPSPSVINMRLDEMLDP- 614
+ AP+ + K DV+SF +L E+ KG+ +P P ++N + + ++
Sbjct: 174 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR---------VPYPGMVNREVLDQVERG 224
Query: 615 -RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
R+P P P+ L +M C PE RPT + + F YF+ P
Sbjct: 225 YRMPCP-PECPESLHDLM---CQCWRKEPEERPTFEYLQA---FLEDYFTSTEP 271
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 110/263 (41%), Gaps = 59/263 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IG G G V + + +AVK + A + F AE +T++RH N+V+ G
Sbjct: 201 IGKGEFGDVMLGDYRGNK-VAVKCIKND------ATAQAFLAEASVMTQLRHSNLVQLLG 253
Query: 489 FCSHARHSI-LIYEYLKRGSLATNLSNDA------------------AAEEL-------- 521
+ + ++ EY+ +GSL L + A E L
Sbjct: 254 VIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHR 313
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVY 575
D++++NVL+ ++ A VSDFG+ K SS ++ AP+ + K DV+
Sbjct: 314 DLAARNVLVSEDNVAKVSDFGLT---KEASSTQDTGKLPVKWTAPEALREKKFSTKSDVW 370
Query: 576 SFRVLALEVI---KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
SF +L E+ + +PR + ++P R+++ P P ++ +
Sbjct: 371 SFGILLWEIYSFGRVPYPRIPLKDVVP-------RVEKGYKMDAPDGCPP------AVYD 417
Query: 633 VAFSCLDVSPESRPTMQTITQQL 655
V +C + +RPT + +QL
Sbjct: 418 VMKNCWHLDAATRPTFLQLREQL 440
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 43/195 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKF-----NSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
IG G +G VY+A+ E A+KK + +PS I EI L +++H NI
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIR-------EISILKELKHSNI 62
Query: 484 VKFYGFCSHARHSILIYEYLKR----------GSLATNLS--------------NDAAAE 519
VK Y + +L++E+L + G L + + +D
Sbjct: 63 VKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVL 122
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ +N+L++ E + ++DFG+A+ ++ V T Y APD Y
Sbjct: 123 HRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEVVTLWYRAPDVLMGSKKYSTTI 182
Query: 573 DVYSFRVLALEVIKG 587
D++S + E++ G
Sbjct: 183 DIWSVGCIFAEMVNG 197
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 118/294 (40%), Gaps = 64/294 (21%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
D EI R + K +G G G V+ +A+K S + F E
Sbjct: 8 DAWEIPRESLRLEVK--LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA-----FLQE 60
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL---------------------AT 510
+ + K+RH +V+ Y S I + EY+ +GSL A
Sbjct: 61 AQVMKKLRHEKLVQLYAVVSEEPIYI-VTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQ 119
Query: 511 NLSNDAAAEEL-----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YR 562
S A E + D+ + N+L+ V+DFG+A+ + + + ++A G +
Sbjct: 120 IASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIK 177
Query: 563 YVAPD------YRKKCDVYSFRVLALEV-IKGKHPRGFVSSILPSPSVINMRLDEMLDP- 614
+ AP+ + K DV+SF +L E+ KG+ +P P ++N + + ++
Sbjct: 178 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR---------VPYPGMVNREVLDQVERG 228
Query: 615 -RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
R+P P P+ L +M C PE RPT + + F YF+ P
Sbjct: 229 YRMPCP-PECPESLHDLM---CQCWRKEPEERPTFEYLQA---FLEDYFTSTEP 275
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 118/294 (40%), Gaps = 64/294 (21%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
D EI R + K +G G G V+ +A+K S + F E
Sbjct: 2 DAWEIPRESLRLEVK--LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA-----FLQE 54
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN------------DAAAE 519
+ + K+RH +V+ Y S I + EY+ +GSL L D AA+
Sbjct: 55 AQVMKKLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQ 113
Query: 520 --------------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YR 562
D+ + N+L+ V+DFG+A+ + + + ++A G +
Sbjct: 114 IASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIK 171
Query: 563 YVAPD------YRKKCDVYSFRVLALEV-IKGKHPRGFVSSILPSPSVINMRLDEMLDP- 614
+ AP+ + K DV+SF +L E+ KG+ +P P ++N + + ++
Sbjct: 172 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR---------VPYPGMVNREVLDQVERG 222
Query: 615 -RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
R+P P P+ L +M C PE RPT + + F YF+ P
Sbjct: 223 YRMPCP-PECPESLHDLM---CQCWRKDPEERPTFEYLQA---FLEDYFTSTEP 269
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 43/195 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKF-----NSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
IG G +G VY+A+ E A+KK + +PS I EI L +++H NI
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIR-------EISILKELKHSNI 62
Query: 484 VKFYGFCSHARHSILIYEYLKR----------GSLATNLS--------------NDAAAE 519
VK Y + +L++E+L + G L + + +D
Sbjct: 63 VKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVL 122
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ +N+L++ E + ++DFG+A+ ++ V T Y APD Y
Sbjct: 123 HRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEVVTLWYRAPDVLMGSKKYSTTI 182
Query: 573 DVYSFRVLALEVIKG 587
D++S + E++ G
Sbjct: 183 DIWSVGCIFAEMVNG 197
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 118/294 (40%), Gaps = 64/294 (21%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
D EI R + K +G G G V+ +A+K S + F E
Sbjct: 260 DAWEIPRESLRLEVK--LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA-----FLQE 312
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN------------DAAAE 519
+ + K+RH +V+ Y S ++ EY+ +GSL L D AA+
Sbjct: 313 AQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQ 371
Query: 520 --------------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YR 562
D+ + N+L+ V+DFG+A+ + + + ++A G +
Sbjct: 372 IASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIK 429
Query: 563 YVAPD------YRKKCDVYSFRVLALEV-IKGKHPRGFVSSILPSPSVINMRLDEMLDP- 614
+ AP+ + K DV+SF +L E+ KG+ +P P ++N + + ++
Sbjct: 430 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR---------VPYPGMVNREVLDQVERG 480
Query: 615 -RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
R+P P P+ L +M C PE RPT + + F YF+ P
Sbjct: 481 YRMPCP-PECPESLHDLM---CQCWRKEPEERPTFEYLQ---AFLEDYFTSTEP 527
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 118/294 (40%), Gaps = 64/294 (21%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
D EI R + K +G G G V+ +A+K S + F E
Sbjct: 177 DAWEIPRESLRLEVK--LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA-----FLQE 229
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN------------DAAAE 519
+ + K+RH +V+ Y S I + EY+ +GSL L D AA+
Sbjct: 230 AQVMKKLRHEKLVQLYAVVSEEPIYI-VGEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQ 288
Query: 520 --------------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YR 562
D+ + N+L+ V+DFG+A+ + + + ++A G +
Sbjct: 289 IASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIK 346
Query: 563 YVAPD------YRKKCDVYSFRVLALEV-IKGKHPRGFVSSILPSPSVINMRLDEMLDP- 614
+ AP+ + K DV+SF +L E+ KG+ +P P ++N + + ++
Sbjct: 347 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR---------VPYPGMVNREVLDQVERG 397
Query: 615 -RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
R+P P P+ L +M C PE RPT + + F YF+ P
Sbjct: 398 YRMPCP-PECPESLHDLM---CQCWRKEPEERPTFEYLQA---FLEDYFTSTEP 444
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 111/257 (43%), Gaps = 46/257 (17%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G VY+ + +KE +A+K + D+I D ++ EI L++ I +++
Sbjct: 27 IGKGSFGEVYKGIDNHTKEVVAIKIIDLEEAEDEIEDIQQ---EITVLSQCDSPYITRYF 83
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------DI 523
G + +I EYL GS A +L EE DI
Sbjct: 84 GSYLKSTKLWIIMEYLGGGS-ALDLLKPGPLEETYIATILREILKGLDYLHSERKIHRDI 142
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSF 577
+ NVLL + ++DFG+A L + VGT ++AP+ Y K D++S
Sbjct: 143 KAANVLLSEQGDVKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDFKADIWSL 202
Query: 578 RVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSC 637
+ A+E+ KG+ P S + P MR+ L P+ PP+ + Q E +C
Sbjct: 203 GITAIELAKGEPPN---SDLHP------MRV-LFLIPKNSPPTLEGQHSK-PFKEFVEAC 251
Query: 638 LDVSPESRPTMQTITQQ 654
L+ P RPT + + +
Sbjct: 252 LNKDPRFRPTAKELLKH 268
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 117/294 (39%), Gaps = 64/294 (21%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
D EI R + K +G G G V+ +A+K S + F E
Sbjct: 1 DAWEIPRESLRLEVK--LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA-----FLQE 53
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN------------DAAAE 519
+ + K+RH +V+ Y S I + EY+ +GSL L D AA+
Sbjct: 54 AQVMKKLRHEKLVQLYAVVSEEPIXI-VTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQ 112
Query: 520 --------------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YR 562
D+ + N+L+ V+DFG+A+ ++ + +A G +
Sbjct: 113 IASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEX--TARQGAKFPIK 170
Query: 563 YVAPD------YRKKCDVYSFRVLALEV-IKGKHPRGFVSSILPSPSVINMRLDEMLDP- 614
+ AP+ + K DV+SF +L E+ KG+ +P P ++N + + ++
Sbjct: 171 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR---------VPYPGMVNREVLDQVERG 221
Query: 615 -RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
R+P P P+ L +M C PE RPT + + F YF+ P
Sbjct: 222 YRMPCP-PECPESLHDLM---CQCWRKEPEERPTFEYLQA---FLEDYFTSTEP 268
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 109/263 (41%), Gaps = 59/263 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IG G G V + + +AVK + A + F AE +T++RH N+V+ G
Sbjct: 20 IGKGEFGDVMLGDYRGNK-VAVKCIKND------ATAQAFLAEASVMTQLRHSNLVQLLG 72
Query: 489 FCSHARHSI-LIYEYLKRGSLATNLSNDA------------------AAEEL-------- 521
+ + ++ EY+ +GSL L + A E L
Sbjct: 73 VIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHR 132
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVY 575
D++++NVL+ ++ A VSDFG+ K SS ++ AP+ + K DV+
Sbjct: 133 DLAARNVLVSEDNVAKVSDFGLT---KEASSTQDTGKLPVKWTAPEALREAAFSTKSDVW 189
Query: 576 SFRVLALEVI---KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
SF +L E+ + +PR + ++P R+++ P P ++ E
Sbjct: 190 SFGILLWEIYSFGRVPYPRIPLKDVVP-------RVEKGYKMDAPDGCPP------AVYE 236
Query: 633 VAFSCLDVSPESRPTMQTITQQL 655
V +C + RP+ + +QL
Sbjct: 237 VMKNCWHLDAAMRPSFLQLREQL 259
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 112/277 (40%), Gaps = 62/277 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G G G V+ +A+K S + F E + + K+RH +V+ Y
Sbjct: 15 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA-----FLQEAQVMKKLRHEKLVQLYA 69
Query: 489 FCSHARHSILIYEYLKRGSLATNLSN------------DAAAE--------------ELD 522
S I + EY+ +GSL L D AA+ D
Sbjct: 70 VVSEEPIYI-VTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD 128
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCD 573
+ + N+L+ V+DFG+A+ + + + ++A G ++ AP+ + K D
Sbjct: 129 LRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIKWTAPEAALYGRFTIKSD 186
Query: 574 VYSFRVLALEV-IKGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGKLISI 630
V+SF +L E+ KG+ +P P ++N + + ++ R+P P P+ L +
Sbjct: 187 VWSFGILLTELTTKGR---------VPYPGMVNREVLDQVERGYRMPCP-PECPESLHDL 236
Query: 631 MEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
M C PE RPT + + F YF+ P
Sbjct: 237 M---CQCWRKDPEERPTFEYLQA---FLEDYFTSTEP 267
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 111/266 (41%), Gaps = 53/266 (19%)
Query: 429 IGSGRHGSVY--RAELPSKE--FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G V R ++P K +A+K + Q +++F +E + + H NI+
Sbjct: 16 IGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQ---RRDFLSEASIMGQFDHPNII 72
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-------------------------NDAAAE 519
G + + ++I EY++ GSL L +D +
Sbjct: 73 HLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSYV 132
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK--- 570
D++++N+L++ VSDFG+++ L+ D G R+ AP+ YRK
Sbjct: 133 HRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTS 192
Query: 571 KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
DV+S+ ++ EV+ G+ P +S + VI ++E RLPPP I+
Sbjct: 193 ASDVWSYGIVMWEVMSYGERPYWDMS----NQDVIKA-IEEGY--RLPPP----MDCPIA 241
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+ ++ C RP I L
Sbjct: 242 LHQLMLDCWQKERSDRPKFGQIVNML 267
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 109/263 (41%), Gaps = 59/263 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IG G G V + + +AVK + A + F AE +T++RH N+V+ G
Sbjct: 14 IGKGEFGDVMLGDYRGNK-VAVKCIKND------ATAQAFLAEASVMTQLRHSNLVQLLG 66
Query: 489 FCSHARHSI-LIYEYLKRGSLATNLSNDA------------------AAEEL-------- 521
+ + ++ EY+ +GSL L + A E L
Sbjct: 67 VIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHR 126
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVY 575
D++++NVL+ ++ A VSDFG+ K SS ++ AP+ + K DV+
Sbjct: 127 DLAARNVLVSEDNVAKVSDFGLT---KEASSTQDTGKLPVKWTAPEALREKKFSTKSDVW 183
Query: 576 SFRVLALEVI---KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
SF +L E+ + +PR + ++P + +M P PP ++ E
Sbjct: 184 SFGILLWEIYSFGRVPYPRIPLKDVVPRVE----KGYKMDAPDGCPP---------AVYE 230
Query: 633 VAFSCLDVSPESRPTMQTITQQL 655
V +C + RP+ + +QL
Sbjct: 231 VMKNCWHLDAAMRPSFLQLREQL 253
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 111/266 (41%), Gaps = 53/266 (19%)
Query: 429 IGSGRHGSVY--RAELPSKE--FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G V R ++P K +A+K + Q +++F +E + + H NI+
Sbjct: 22 IGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQ---RRDFLSEASIMGQFDHPNII 78
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-------------------------NDAAAE 519
G + + ++I EY++ GSL L +D +
Sbjct: 79 HLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSYV 138
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK--- 570
D++++N+L++ VSDFG+++ L+ D G R+ AP+ YRK
Sbjct: 139 HRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTS 198
Query: 571 KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
DV+S+ ++ EV+ G+ P +S + VI ++E RLPPP I+
Sbjct: 199 ASDVWSYGIVMWEVMSYGERPYWDMS----NQDVIKA-IEEGY--RLPPP----MDCPIA 247
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+ ++ C RP I L
Sbjct: 248 LHQLMLDCWQKERSDRPKFGQIVNML 273
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 87/206 (42%), Gaps = 44/206 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRAELPSK-EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
D++ Y IG+G +G + S + L K+ + ++ A+++ +E+ L +++
Sbjct: 6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE--AEKQMLVSEVNLLRELK 63
Query: 480 HRNIVKFYGFCSHARHSIL--IYEYLKRGSLATNLSNDAAAEEL---------------- 521
H NIV++Y ++ L + EY + G LA+ ++ +
Sbjct: 64 HPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLA 123
Query: 522 -----------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYV 564
D+ NV LD + + DFG+A+ L D+S VGT Y+
Sbjct: 124 LKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYM 183
Query: 565 APD------YRKKCDVYSFRVLALEV 584
+P+ Y +K D++S L E+
Sbjct: 184 SPEQMNRMSYNEKSDIWSLGCLLYEL 209
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 43/195 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKF-----NSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
IG G +G VY+A+ E A+KK + +PS I EI L +++H NI
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIR-------EISILKELKHSNI 62
Query: 484 VKFYGFCSHARHSILIYEYLKR----------GSLATNLS--------------NDAAAE 519
VK Y + +L++E+L + G L + + +D
Sbjct: 63 VKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVL 122
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ +N+L++ E + ++DFG+A+ ++ + T Y APD Y
Sbjct: 123 HRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTI 182
Query: 573 DVYSFRVLALEVIKG 587
D++S + E++ G
Sbjct: 183 DIWSVGCIFAEMVNG 197
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 118/294 (40%), Gaps = 64/294 (21%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
D EI R + K +G G G V+ +A+K S + F E
Sbjct: 11 DAWEIPRESLRLEVK--LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA-----FLQE 63
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN------------DAAAE 519
+ + K+RH +V+ Y S I++ EY+ +G L L D AA+
Sbjct: 64 AQVMKKLRHEKLVQLYAVVSEEPIYIVM-EYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQ 122
Query: 520 --------------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YR 562
D+ + N+L+ V+DFG+A+ + + + ++A G +
Sbjct: 123 IASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIK 180
Query: 563 YVAPD------YRKKCDVYSFRVLALEV-IKGKHPRGFVSSILPSPSVINMRLDEMLDP- 614
+ AP+ + K DV+SF +L E+ KG+ +P P ++N + + ++
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR---------VPYPGMVNREVLDQVERG 231
Query: 615 -RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
R+P P P+ L +M C PE RPT + + F YF+ P
Sbjct: 232 YRMPCP-PECPESLHDLM---CQCWRKDPEERPTFEYLQA---FLEDYFTSTEP 278
>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
Domain Of Csf-1r
Length = 324
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 114/286 (39%), Gaps = 76/286 (26%)
Query: 429 IGSGRHGSVYRAEL--PSKEFLAVKKFNSPLPSDQIADQKE-FFAEIEALTKI-RHRNIV 484
+G+G G V A KE +K L S AD+KE +E++ ++ + +H NIV
Sbjct: 39 LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIV 98
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLSNDAAA------------EELD---------- 522
G C+H ++I EY G L L A A E LD
Sbjct: 99 NLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEAMLGPSLAPGQDPEGLDKEDGRPLELR 158
Query: 523 -------------------------ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL 557
++++NVLL H A + DFG+A+ + DS+ +
Sbjct: 159 DLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSN--YIV 216
Query: 558 VGTYR----YVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV-INM 606
G R ++AP+ Y + DV+S+ +L E+ F + P P + +N
Sbjct: 217 KGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEI--------FSLGLNPYPGILVNS 268
Query: 607 RLDEMLDPRLPPPSPDVQGK-LISIMEVAFSCLDVSPESRPTMQTI 651
+ +++ P K + SIM+ +C + P RPT Q I
Sbjct: 269 KFYKLVKDGYQMAQPAFAPKNIYSIMQ---ACWALEPTHRPTFQQI 311
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 115/279 (41%), Gaps = 69/279 (24%)
Query: 429 IGSGRHGSVYRAEL--PSKEFLAVKKFNSPLPSDQIADQKE-FFAEIEALTKI-RHRNIV 484
+G+G G V A KE +K L S AD+KE +E++ ++ + +H NIV
Sbjct: 54 LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIV 113
Query: 485 KFYGFCSHARHSILIYEYLKRGSL------------------ATNLSNDAAAEEL----- 521
G C+H ++I EY G L + N ++ +L
Sbjct: 114 NLLGACTHGGPVLVITEYCCYGDLLNFLRRKRPPGLEYSYNPSHNPEEQLSSRDLLHFSS 173
Query: 522 -----------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR-- 562
D++++NVLL H A + DFG+A+ + DS+ + G R
Sbjct: 174 QVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSN--YIVKGNARLP 231
Query: 563 --YVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV-INMRLDEMLD 613
++AP+ Y + DV+S+ +L E+ F + P P + +N + +++
Sbjct: 232 VKWMAPESIFDCVYTVQSDVWSYGILLWEI--------FSLGLNPYPGILVNSKFYKLVK 283
Query: 614 PRLPPPSPDVQGK-LISIMEVAFSCLDVSPESRPTMQTI 651
P K + SIM+ +C + P RPT Q I
Sbjct: 284 DGYQMAQPAFAPKNIYSIMQ---ACWALEPTHRPTFQQI 319
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 109/263 (41%), Gaps = 59/263 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IG G G V + + +AVK + A + F AE +T++RH N+V+ G
Sbjct: 29 IGKGEFGDVMLGDYRGNK-VAVKCIKND------ATAQAFLAEASVMTQLRHSNLVQLLG 81
Query: 489 FCSHARHSI-LIYEYLKRGSLATNLSNDA------------------AAEEL-------- 521
+ + ++ EY+ +GSL L + A E L
Sbjct: 82 VIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHR 141
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVY 575
D++++NVL+ ++ A VSDFG+ K SS ++ AP+ + K DV+
Sbjct: 142 DLAARNVLVSEDNVAKVSDFGLT---KEASSTQDTGKLPVKWTAPEALREKKFSTKSDVW 198
Query: 576 SFRVLALEVI---KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
SF +L E+ + +PR + ++P R+++ P P ++ E
Sbjct: 199 SFGILLWEIYSFGRVPYPRIPLKDVVP-------RVEKGYKMDAPDGCPP------AVYE 245
Query: 633 VAFSCLDVSPESRPTMQTITQQL 655
V +C + RP+ + +QL
Sbjct: 246 VMKNCWHLDAAMRPSFLQLREQL 268
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
In Complex With Dasatinib
Length = 265
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 109/264 (41%), Gaps = 55/264 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V + + +A+K S+ EF E + + + H +V+ YG
Sbjct: 17 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSED-----EFIEEAKVMMNLSHEKLVQLYG 71
Query: 489 FCSHARHSILIYEYLKRGSLATNLSND-----------------AAAEEL--------DI 523
C+ R +I EY+ G L L A E L D+
Sbjct: 72 VCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDL 131
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCDV 574
+++N L++ + VSDFG+++++ D +++ G+ R+ P+ + K D+
Sbjct: 132 AARNCLVNDQGVVKVSDFGLSRYVLDD--EYTSSRGSKFPVRWSPPEVLMYSKFSSKSDI 189
Query: 575 YSFRVLALEVIK-GKHP-RGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
++F VL E+ GK P F +S +RL P L K+ +IM
Sbjct: 190 WAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRL---YRPHLASE------KVYTIM- 239
Query: 633 VAFSCLDVSPESRPTMQTITQQLL 656
+SC + RPT + + +L
Sbjct: 240 --YSCWHEKADERPTFKILLSNIL 261
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 117/294 (39%), Gaps = 64/294 (21%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
D EI R + K +G G G V+ +A+K S + F E
Sbjct: 11 DAWEIPRESLRLEVK--LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA-----FLQE 63
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN------------DAAAE 519
+ + K+RH +V+ Y S I + EY+ +G L L D AA+
Sbjct: 64 AQVMKKLRHEKLVQLYAVVSEEPIYI-VTEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQ 122
Query: 520 --------------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YR 562
D+ + N+L+ V+DFG+A+ + + + ++A G +
Sbjct: 123 IASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIK 180
Query: 563 YVAPD------YRKKCDVYSFRVLALEV-IKGKHPRGFVSSILPSPSVINMRLDEMLDP- 614
+ AP+ + K DV+SF +L E+ KG+ +P P ++N + + ++
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR---------VPYPGMVNREVLDQVERG 231
Query: 615 -RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
R+P P P+ L +M C PE RPT + + F YF+ P
Sbjct: 232 YRMPCP-PECPESLHDLM---CQCWRKDPEERPTFEYLQA---FLEDYFTSTEP 278
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 110/255 (43%), Gaps = 48/255 (18%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G V++ + +++ +A+K + D+I D ++ EI L++ + K+Y
Sbjct: 31 IGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQ---EITVLSQCDSSYVTKYY 87
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------DI 523
G +I EYL GS A +L +E DI
Sbjct: 88 GSYLKGSKLWIIMEYLGGGS-ALDLLRAGPFDEFQIATMLKEILKGLDYLHSEKKIHRDI 146
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSF 577
+ NVLL + ++DFG+A L + VGT ++AP+ Y K D++S
Sbjct: 147 KAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSL 206
Query: 578 RVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI-SIMEVAFS 636
+ A+E+ KG+ P S + P MR+ L P+ PP+ + G S E +
Sbjct: 207 GITAIELAKGEPPN---SDMHP------MRV-LFLIPKNNPPT--LVGDFTKSFKEFIDA 254
Query: 637 CLDVSPESRPTMQTI 651
CL+ P RPT + +
Sbjct: 255 CLNKDPSFRPTAKEL 269
>pdb|3MY0|A Chain A, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|B Chain B, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|C Chain C, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|D Chain D, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|E Chain E, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|F Chain F, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|G Chain G, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|H Chain H, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|I Chain I, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|J Chain J, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|K Chain K, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|L Chain L, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|M Chain M, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|N Chain N, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|O Chain O, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|P Chain P, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|Q Chain Q, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|R Chain R, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|S Chain S, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|T Chain T, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|U Chain U, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|V Chain V, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|W Chain W, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|X Chain X, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
Length = 305
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 114/292 (39%), Gaps = 73/292 (25%)
Query: 428 CIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI--RHRNIVK 485
C+G GR+G V+R L E +AVK F+S D++ +F E E + RH NI+
Sbjct: 15 CVGKGRYGEVWRG-LWHGESVAVKIFSS-------RDEQSWFRETEIYNTVLLRHDNILG 66
Query: 486 FYG-------------FCSHARHSILIYEYLKRGSLATNLS------------------- 513
F +H +Y++L+R +L +L+
Sbjct: 67 FIASDMTSRNSSTQLWLITHYHEHGSLYDFLQRQTLEPHLALRLAVSAACGLAHLHVEIF 126
Query: 514 ---NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL-----VGTYRYVA 565
A D S+NVL+ + ++D G+A + S++ + VGT RY+A
Sbjct: 127 GTQGKPAIAHRDFKSRNVLVKSNLQCCIADLGLA-VMHSQGSDYLDIGNNPRVGTKRYMA 185
Query: 566 PDY-----RKKC-------DVYSFRVLALEVIKGKHPRGFVSSILP--------SPSVIN 605
P+ R C D+++F ++ E+ + G V P PS +
Sbjct: 186 PEVLDEQIRTDCFESYKWTDIWAFGLVLWEIARRTIVNGIVEDYRPPFYDVVPNDPSFED 245
Query: 606 MRLDEMLDPRLP--PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
M+ +D + P P L + ++ C +P +R T I + L
Sbjct: 246 MKKVVCVDQQTPTIPNRLAADPVLSGLAQMMRECWYPNPSARLTALRIKKTL 297
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 105/257 (40%), Gaps = 53/257 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IGSG G+VY+ + +AVK N P+ Q + F E+ L K RH NI+ F G
Sbjct: 16 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 71
Query: 489 FCSHARHSIL--------IYEYL----------------KRGSLATNLSNDAAAEELDIS 524
+ + + +I+ +Y +L ++ + + + + D+
Sbjct: 72 YSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLK 131
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA------LVGTYRYVAPD---------YR 569
S N+ L + + DFG+A + S WS L G+ ++AP+ Y
Sbjct: 132 SNNIFLHEDLTVKIGDFGLAT----EKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYS 187
Query: 570 KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
+ DVY+F ++ E++ G+ P S+I +I M L P L + +
Sbjct: 188 FQSDVYAFGIVLYELMTGQLP---YSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKR 244
Query: 630 IMEVAFSCLDVSPESRP 646
+M CL + RP
Sbjct: 245 LMA---ECLKKKRDERP 258
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 118/294 (40%), Gaps = 64/294 (21%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
D EI R + K +G G G V+ +A+K P + + F E
Sbjct: 178 DAWEIPRESLRLEVK--LGQGCFGEVWMGTWNGTTRVAIKTLK---PGNMSPEA--FLQE 230
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN------------DAAAE 519
+ + K+RH +V+ Y S I + EY+ +GSL L D AA+
Sbjct: 231 AQVMKKLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQ 289
Query: 520 --------------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YR 562
D+ + N+L+ V+DFG+ + + + + ++A G +
Sbjct: 290 IASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLGRLI--EDNEYTARQGAKFPIK 347
Query: 563 YVAPD------YRKKCDVYSFRVLALEV-IKGKHPRGFVSSILPSPSVINMRLDEMLDP- 614
+ AP+ + K DV+SF +L E+ KG+ +P P ++N + + ++
Sbjct: 348 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR---------VPYPGMVNREVLDQVERG 398
Query: 615 -RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
R+P P P+ L +M C PE RPT + + F YF+ P
Sbjct: 399 YRMPCP-PECPESLHDLM---CQCWRKDPEERPTFEYLQA---FLEDYFTSTEP 445
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 105/257 (40%), Gaps = 53/257 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IGSG G+VY+ + +AVK N P+ Q + F E+ L K RH NI+ F G
Sbjct: 36 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 91
Query: 489 FCSHARHSIL--------IYEYL----------------KRGSLATNLSNDAAAEELDIS 524
+ + + +I+ +Y +L ++ + + + + D+
Sbjct: 92 YSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLK 151
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA------LVGTYRYVAPD---------YR 569
S N+ L + + DFG+A + S WS L G+ ++AP+ Y
Sbjct: 152 SNNIFLHEDLTVKIGDFGLA----TEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYS 207
Query: 570 KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
+ DVY+F ++ E++ G+ P S+I +I M L P L + +
Sbjct: 208 FQSDVYAFGIVLYELMTGQLP---YSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKR 264
Query: 630 IMEVAFSCLDVSPESRP 646
+M CL + RP
Sbjct: 265 LMA---ECLKKKRDERP 278
>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3EYH|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 290
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 113/280 (40%), Gaps = 68/280 (24%)
Query: 429 IGSGRHGSV----YRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G G V Y E + E +AVK + IAD K+ EIE L + H NI
Sbjct: 17 LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKK---EIEILRNLYHENI 73
Query: 484 VKFYGFCSH--ARHSILIYEYLKRGSLATNLSNDAAAEEL-------------------- 521
VK+ G C+ LI E+L GSL L + L
Sbjct: 74 VKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSR 133
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN------------WSA---LVGTY 561
D++++NVL++ EH+ + DFG+ K ++ D W A L+ +
Sbjct: 134 QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPVFWYAPECLMQSK 193
Query: 562 RYVAPDYRKKCDVYSFRVLALEVI----KGKHPRG-FVSSILPSPSVINM-RLDEMLD-- 613
Y+A DV+SF V E++ P F+ I P+ + + RL L
Sbjct: 194 FYIA------SDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEG 247
Query: 614 PRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
RLP P P+ ++ +M C + P +R + Q + +
Sbjct: 248 KRLPCP-PNCPDEVYQLMR---KCWEFQPSNRTSFQNLIE 283
>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|C Chain C, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|D Chain D, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|E Chain E, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|F Chain F, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
Length = 384
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 99/258 (38%), Gaps = 57/258 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFA 470
FD+ EI+RAI G G G V + + + K+ + + + + F
Sbjct: 14 FDHFEILRAI---------GKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFK 64
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------- 520
E++ + + H +V + ++ + L G L +L + +E
Sbjct: 65 ELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQNVHFKEETVKLFICEL 124
Query: 521 --------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP 566
D+ N+LLD H++DF IA L P + + + GT Y+AP
Sbjct: 125 VMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAML-PRETQITTMAGTKPYMAP 183
Query: 567 D---------YRKKCDVYSFRVLALEVIKGKHP-------------RGFVSSILPSPSVI 604
+ Y D +S V A E+++G+ P F ++++ PS
Sbjct: 184 EMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTVVTYPSAW 243
Query: 605 NMRLDEMLDPRLPPPSPD 622
+ + +L +L P+PD
Sbjct: 244 SQEMVSLL-KKLLEPNPD 260
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 104/257 (40%), Gaps = 53/257 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IGSG G+VY+ + +AVK N P+ Q + F E+ L K RH NI+ F G
Sbjct: 16 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 71
Query: 489 FCSHARHSIL--------IYEYL----------------KRGSLATNLSNDAAAEELDIS 524
+ + + +I+ +Y +L ++ + + + + D+
Sbjct: 72 YSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLK 131
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA------LVGTYRYVAPD---------YR 569
S N+ L + + DFG+A S WS L G+ ++AP+ Y
Sbjct: 132 SNNIFLHEDLTVKIGDFGLATV----KSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYS 187
Query: 570 KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
+ DVY+F ++ E++ G+ P S+I +I M L P L + +
Sbjct: 188 FQSDVYAFGIVLYELMTGQLP---YSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKR 244
Query: 630 IMEVAFSCLDVSPESRP 646
+M CL + RP
Sbjct: 245 LMA---ECLKKKRDERP 258
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 105/257 (40%), Gaps = 53/257 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IGSG G+VY+ + +AVK N P+ Q + F E+ L K RH NI+ F G
Sbjct: 44 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 99
Query: 489 FCSHARHSIL--------IYEYL----------------KRGSLATNLSNDAAAEELDIS 524
+ + + +I+ +Y +L ++ + + + + D+
Sbjct: 100 YSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLK 159
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA------LVGTYRYVAPD---------YR 569
S N+ L + + DFG+A + S WS L G+ ++AP+ Y
Sbjct: 160 SNNIFLHEDLTVKIGDFGLA----TEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYS 215
Query: 570 KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
+ DVY+F ++ E++ G+ P S+I +I M L P L + +
Sbjct: 216 FQSDVYAFGIVLYELMTGQLP---YSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKR 272
Query: 630 IMEVAFSCLDVSPESRP 646
+M CL + RP
Sbjct: 273 LMA---ECLKKKRDERP 286
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 35/231 (15%)
Query: 391 GQRSPQNSQGLLSILSFKGKFD-YVEIIRAINDFDAKYCIGSGRHGSVYRAELPSK-EFL 448
G RSPQ +S F+ V+ + D IG G G V A + S + +
Sbjct: 43 GPRSPQREPQRVSHEQFRAALQLVVDPGDPRSYLDNFIKIGEGSTGIVCIATVRSSGKLV 102
Query: 449 AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL 508
AVKK + L Q ++ F E+ + +H N+V+ Y ++ E+L+ G+L
Sbjct: 103 AVKKMD--LRKQQ--RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGAL 158
Query: 509 ATNLSNDAAAEE-----------------------LDISSKNVLLDLEHKAHVSDFGIAK 545
+++ EE DI S ++LL + + +SDFG
Sbjct: 159 TDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCA 218
Query: 546 FLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
+ + LVGT ++AP+ Y + D++S ++ +E++ G+ P
Sbjct: 219 QVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPP 269
>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|E Chain E, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|D Chain D, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4N|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E4N|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E5W|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4E5W|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4EHZ|A Chain A, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|B Chain B, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|C Chain C, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|D Chain D, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EI4|A Chain A, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4EI4|B Chain B, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4FK6|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
pdb|4FK6|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
Length = 302
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 113/280 (40%), Gaps = 68/280 (24%)
Query: 429 IGSGRHGSV----YRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G G V Y E + E +AVK + IAD K+ EIE L + H NI
Sbjct: 29 LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKK---EIEILRNLYHENI 85
Query: 484 VKFYGFCSH--ARHSILIYEYLKRGSLATNLSNDAAAEEL-------------------- 521
VK+ G C+ LI E+L GSL L + L
Sbjct: 86 VKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSR 145
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN------------WSA---LVGTY 561
D++++NVL++ EH+ + DFG+ K ++ D W A L+ +
Sbjct: 146 QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPVFWYAPECLMQSK 205
Query: 562 RYVAPDYRKKCDVYSFRVLALEVI----KGKHPRG-FVSSILPSPSVINM-RLDEMLD-- 613
Y+A DV+SF V E++ P F+ I P+ + + RL L
Sbjct: 206 FYIA------SDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEG 259
Query: 614 PRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
RLP P P+ ++ +M C + P +R + Q + +
Sbjct: 260 KRLPCP-PNCPDEVYQLMR---KCWEFQPSNRTSFQNLIE 295
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 104/257 (40%), Gaps = 53/257 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IGSG G+VY+ + +AVK N P+ Q + F E+ L K RH NI+ F G
Sbjct: 16 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 71
Query: 489 FCSHARHSIL--------IYEYL----------------KRGSLATNLSNDAAAEELDIS 524
+ + + +I+ +Y +L ++ + + + + D+
Sbjct: 72 YSTAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLK 131
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA------LVGTYRYVAPD---------YR 569
S N+ L + + DFG+A S WS L G+ ++AP+ Y
Sbjct: 132 SNNIFLHEDLTVKIGDFGLATV----KSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYS 187
Query: 570 KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
+ DVY+F ++ E++ G+ P S+I +I M L P L + +
Sbjct: 188 FQSDVYAFGIVLYELMTGQLP---YSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKR 244
Query: 630 IMEVAFSCLDVSPESRP 646
+M CL + RP
Sbjct: 245 LMA---ECLKKKRDERP 258
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 104/257 (40%), Gaps = 53/257 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IGSG G+VY+ + +AVK N P+ Q + F E+ L K RH NI+ F G
Sbjct: 21 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 76
Query: 489 FCSHARHSIL--------IYEYL----------------KRGSLATNLSNDAAAEELDIS 524
+ + + +I+ +Y +L ++ + + + + D+
Sbjct: 77 YSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLK 136
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA------LVGTYRYVAPD---------YR 569
S N+ L + + DFG+A S WS L G+ ++AP+ Y
Sbjct: 137 SNNIFLHEDLTVKIGDFGLATV----KSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYS 192
Query: 570 KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
+ DVY+F ++ E++ G+ P S+I +I M L P L + +
Sbjct: 193 FQSDVYAFGIVLYELMTGQLP---YSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKR 249
Query: 630 IMEVAFSCLDVSPESRP 646
+M CL + RP
Sbjct: 250 LMA---ECLKKKRDERP 263
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 104/257 (40%), Gaps = 53/257 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IGSG G+VY+ + +AVK N P+ Q + F E+ L K RH NI+ F G
Sbjct: 18 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 73
Query: 489 FCSHARHSIL--------IYEYL----------------KRGSLATNLSNDAAAEELDIS 524
+ + + +I+ +Y +L ++ + + + + D+
Sbjct: 74 YSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLK 133
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA------LVGTYRYVAPD---------YR 569
S N+ L + + DFG+A S WS L G+ ++AP+ Y
Sbjct: 134 SNNIFLHEDLTVKIGDFGLATV----KSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYS 189
Query: 570 KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
+ DVY+F ++ E++ G+ P S+I +I M L P L + +
Sbjct: 190 FQSDVYAFGIVLYELMTGQLP---YSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKR 246
Query: 630 IMEVAFSCLDVSPESRP 646
+M CL + RP
Sbjct: 247 LMA---ECLKKKRDERP 260
>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680
Length = 292
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 83/204 (40%), Gaps = 36/204 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKK--FNSPLPSDQIADQKEFFAEIEALT 476
I+DF+ +G G+ G+VY A F+ K F S + + + Q EIE
Sbjct: 21 TIDDFEIGRPLGKGKFGNVYLAREKKSHFIVALKVLFKSQIEKEGVEHQ--LRREIEIQA 78
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+ H NI++ Y + R LI EY RG L L +E
Sbjct: 79 HLHHPNILRLYNYFYDRRRIYLILEYAPRGELYKELQKSCTFDEQRTATIMEELADALMY 138
Query: 521 --------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+LL L+ + ++DFG + + S + GT Y+ P+
Sbjct: 139 CHGKKVIHRDIKPENLLLGLKGELKIADFGWS--VHAPSLRRKTMCGTLDYLPPEMIEGR 196
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ +K D++ VL E++ G P
Sbjct: 197 MHNEKVDLWCIGVLCYELLVGNPP 220
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 104/257 (40%), Gaps = 53/257 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IGSG G+VY+ + +AVK N P+ Q + F E+ L K RH NI+ F G
Sbjct: 21 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 76
Query: 489 FCSHARHSIL--------IYEYL----------------KRGSLATNLSNDAAAEELDIS 524
+ + + +I+ +Y +L ++ + + + + D+
Sbjct: 77 YSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLK 136
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA------LVGTYRYVAPD---------YR 569
S N+ L + + DFG+A S WS L G+ ++AP+ Y
Sbjct: 137 SNNIFLHEDLTVKIGDFGLATV----KSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYS 192
Query: 570 KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
+ DVY+F ++ E++ G+ P S+I +I M L P L + +
Sbjct: 193 FQSDVYAFGIVLYELMTGQLP---YSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKR 249
Query: 630 IMEVAFSCLDVSPESRP 646
+M CL + RP
Sbjct: 250 LMA---ECLKKKRDERP 263
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 138/304 (45%), Gaps = 33/304 (10%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
NLTNL L L +N +T + P + NL +L +L L N S S++ L+SL+ L
Sbjct: 105 NLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSS 160
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNI---CRNGALERVIVGGNHFRGPIPKC 117
N ++ P + NL LE + N +I + LE +I N P
Sbjct: 161 NQVTDLKP--LANLT----TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG 214
Query: 118 LRNCPNLVRISLEGNNMR--GTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTL 175
+ NL +SL GN ++ GT++ NLT LD++ NN +A G KL+ L
Sbjct: 215 I--LTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLA-NNQISNLAPLSG-LTKLTEL 266
Query: 176 NVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLP 235
+ N I+ PL L+ L +L+ N + P L +LT L L N + P
Sbjct: 267 KLGANQISNISPL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Query: 236 SEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSEL 295
+ SLTKL+ L S N+ S + SL NL +++L Q P L L ++++L
Sbjct: 323 --VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 376
Query: 296 ELSH 299
L+
Sbjct: 377 GLND 380
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 121/304 (39%), Gaps = 73/304 (24%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
L NL +++ +N LT + P + NL LV + + NQ P + NL++L L LF
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLF-- 115
Query: 62 NLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNC 121
NN T L+N
Sbjct: 116 ---------------------NNQITD--------------------------IDPLKNL 128
Query: 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNN 181
NL R+ L N + IS G+ +L L S N L L++S N
Sbjct: 129 TNLNRLELSSNTISD-ISALSGLT-SLQQLSFSSNQVTD--LKPLANLTTLERLDISSNK 184
Query: 182 ITR-SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL--IGHLPSEI 238
++ S+ ++ NL +L ++ N+ + I G L +L +L L GNQL IG L
Sbjct: 185 VSDISVLAKLTNLESL----IATNNQISDI-TPLGILTNLDELSLNGNQLKDIGTL---- 235
Query: 239 GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELS 298
SLT L L+L+ N+ S+L P L L KL L L Q P L L L+ LEL+
Sbjct: 236 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 291
Query: 299 HNFL 302
N L
Sbjct: 292 ENQL 295
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 104/257 (40%), Gaps = 53/257 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IGSG G+VY+ + +AVK N P+ Q + F E+ L K RH NI+ F G
Sbjct: 44 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 99
Query: 489 FCSHARHSIL--------IYEYL----------------KRGSLATNLSNDAAAEELDIS 524
+ + + +I+ +Y +L ++ + + + + D+
Sbjct: 100 YSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLK 159
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA------LVGTYRYVAPD---------YR 569
S N+ L + + DFG+A S WS L G+ ++AP+ Y
Sbjct: 160 SNNIFLHEDLTVKIGDFGLATV----KSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYS 215
Query: 570 KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
+ DVY+F ++ E++ G+ P S+I +I M L P L + +
Sbjct: 216 FQSDVYAFGIVLYELMTGQLP---YSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKR 272
Query: 630 IMEVAFSCLDVSPESRP 646
+M CL + RP
Sbjct: 273 LMA---ECLKKKRDERP 286
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 98/236 (41%), Gaps = 45/236 (19%)
Query: 391 GQRSPQNSQGLLSILSFKGKFDYVEIIRAINDFDAK------YCIGSGRHGSVYRAELPS 444
G RSPQ +S F+ V ++ D + IG G G V A + S
Sbjct: 120 GPRSPQREPQRVSHEQFRAALQLV-----VDPGDPRSYLDNFIKIGEGSTGIVCIATVRS 174
Query: 445 K-EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYL 503
+ +AVKK + L Q ++ F E+ + +H N+V+ Y ++ E+L
Sbjct: 175 SGKLVAVKKMD--LRKQQ--RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230
Query: 504 KRGSLATNLSNDAAAEE-----------------------LDISSKNVLLDLEHKAHVSD 540
+ G+L +++ EE DI S ++LL + + +SD
Sbjct: 231 EGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSD 290
Query: 541 FGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
FG + + LVGT ++AP+ Y + D++S ++ +E++ G+ P
Sbjct: 291 FGFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPP 346
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 104/257 (40%), Gaps = 53/257 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IGSG G+VY+ + +AVK N P+ Q + F E+ L K RH NI+ F G
Sbjct: 43 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 98
Query: 489 FCSHARHSIL--------IYEYL----------------KRGSLATNLSNDAAAEELDIS 524
+ + + +I+ +Y +L ++ + + + + D+
Sbjct: 99 YSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLK 158
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA------LVGTYRYVAPD---------YR 569
S N+ L + + DFG+A S WS L G+ ++AP+ Y
Sbjct: 159 SNNIFLHEDLTVKIGDFGLATV----KSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYS 214
Query: 570 KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
+ DVY+F ++ E++ G+ P S+I +I M L P L + +
Sbjct: 215 FQSDVYAFGIVLYELMTGQLP---YSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKR 271
Query: 630 IMEVAFSCLDVSPESRP 646
+M CL + RP
Sbjct: 272 LMA---ECLKKKRDERP 285
>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6
Length = 321
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 34/198 (17%)
Query: 423 FDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
D+ IG G G V A E S +AVK + L Q ++ F E+ + +H
Sbjct: 47 LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMD--LRKQQ--RRELLFNEVVIMRDYQHF 102
Query: 482 NIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-------------------- 521
N+V+ Y ++ E+L+ G+L +S EE
Sbjct: 103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGV 162
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKC 572
DI S ++LL L+ + +SDFG + D LVGT ++AP+ Y +
Sbjct: 163 IHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKXLVGTPYWMAPEVISRSLYATEV 222
Query: 573 DVYSFRVLALEVIKGKHP 590
D++S ++ +E++ G+ P
Sbjct: 223 DIWSLGIMVIEMVDGEPP 240
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 85/206 (41%), Gaps = 44/206 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRAELPSK-EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
D++ Y IG+G +G + S + L K+ + ++ A+++ +E+ L +++
Sbjct: 6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE--AEKQMLVSEVNLLRELK 63
Query: 480 HRNIVKFYGFCSHARHSIL--IYEYLKRGSLATNLSNDAAAEEL---------------- 521
H NIV++Y ++ L + EY + G LA+ ++ +
Sbjct: 64 HPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLA 123
Query: 522 -----------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYV 564
D+ NV LD + + DFG+A+ L D VGT Y+
Sbjct: 124 LKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDEDFAKEFVGTPYYM 183
Query: 565 APD------YRKKCDVYSFRVLALEV 584
+P+ Y +K D++S L E+
Sbjct: 184 SPEQMNRMSYNEKSDIWSLGCLLYEL 209
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 115/281 (40%), Gaps = 59/281 (20%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
D EI R + K +G+G+ G V+ A +AVK P + F AE
Sbjct: 8 DAWEIPRESLKLEKK--LGAGQFGEVWMATYNKHTKVAVKTMK---PGSMSVEA--FLAE 60
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE----------- 520
+ ++H +VK + + I I E++ +GSL L +D +++
Sbjct: 61 ANVMKTLQHDKLVKLHAVVTKEPIYI-ITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQ 119
Query: 521 ---------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YR 562
D+ + N+L+ ++DFG+A+ + + + ++A G +
Sbjct: 120 IAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVI--EDNEYTAREGAKFPIK 177
Query: 563 YVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP-- 614
+ AP+ + K DV+SF +L +E++ +P P + N + L+
Sbjct: 178 WTAPEAINFGSFTIKSDVWSFGILLMEIV--------TYGRIPYPGMSNPEVIRALERGY 229
Query: 615 RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
R+P P + +L +IM C PE RPT + I L
Sbjct: 230 RMPRPE-NCPEELYNIM---MRCWKNRPEERPTFEYIQSVL 266
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 110/277 (39%), Gaps = 71/277 (25%)
Query: 429 IGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482
+G G G V+ AE K +AVK SD +K+F E E LT ++H +
Sbjct: 21 LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA--SDNA--RKDFHREAELLTNLQHEH 76
Query: 483 IVKFYGFCSHARHSILIYEYLKRGSL----------ATNLSNDAAAEEL----------- 521
IVKFYG C I+++EY+K G L A ++ EL
Sbjct: 77 IVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQ 136
Query: 522 ----------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT----Y 561
D++++N L+ + DFG+++ + S+++ + G
Sbjct: 137 IAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVY--STDYYRVGGHTMLPI 194
Query: 562 RYVAPD---YRK---KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDP 614
R++ P+ YRK + DV+S V+ E+ GK P +S+ + R+ + P
Sbjct: 195 RWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRV--LQRP 252
Query: 615 RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
R P + E+ C P R ++ I
Sbjct: 253 RTCPQ---------EVYELMLGCWQREPHMRKNIKGI 280
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 109/278 (39%), Gaps = 66/278 (23%)
Query: 429 IGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G GSV + E +AVKK ++F EIE L ++H NI
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL----RDFEREIEILKSLQHDNI 76
Query: 484 VKFYGFCSHA--RHSILIYEYLKRGSLATNLSNDAAAEELD------------------- 522
VK+ G C A R+ LI EYL GSL L A AE +D
Sbjct: 77 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ--AHAERIDHIKLLQYTSQICKGMEYLG 134
Query: 523 --------ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD---- 567
++++N+L++ E++ + DFG+ K L D + AP+
Sbjct: 135 TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTE 194
Query: 568 --YRKKCDVYSFRVLALEVI----KGKHPRGFVSSIL---PSPSVINMRLDEML--DPRL 616
+ DV+SF V+ E+ K K P ++ +I L E+L + RL
Sbjct: 195 SKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRL 254
Query: 617 PPPS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTIT 652
P P PD I + C + + RP+ + +
Sbjct: 255 PRPDGCPD------EIYMIMTECWNNNVNQRPSFRDLA 286
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 115/281 (40%), Gaps = 59/281 (20%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
D EI R + K +G+G+ G V+ A +AVK P + F AE
Sbjct: 181 DAWEIPRESLKLEKK--LGAGQFGEVWMATYNKHTKVAVKTMK---PGSMSVEA--FLAE 233
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE----------- 520
+ ++H +VK + + I I E++ +GSL L +D +++
Sbjct: 234 ANVMKTLQHDKLVKLHAVVTKEPIYI-ITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQ 292
Query: 521 ---------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YR 562
D+ + N+L+ ++DFG+A+ + + + ++A G +
Sbjct: 293 IAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVI--EDNEYTAREGAKFPIK 350
Query: 563 YVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP-- 614
+ AP+ + K DV+SF +L +E++ +P P + N + L+
Sbjct: 351 WTAPEAINFGSFTIKSDVWSFGILLMEIV--------TYGRIPYPGMSNPEVIRALERGY 402
Query: 615 RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
R+P P + +L +IM C PE RPT + I L
Sbjct: 403 RMPRPE-NCPEELYNIM---MRCWKNRPEERPTFEYIQSVL 439
>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor
Length = 269
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 49/211 (23%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK-- 477
+ D+D +G G +G V LAV + + +I D K E + K
Sbjct: 6 VEDWDLVQTLGEGAYGEVQ---------LAVNRVTEEAVAVKIVDMKRAVDCPENIKKEI 56
Query: 478 -----IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------ 520
+ H N+VKFYG L EY G L + D E
Sbjct: 57 CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 116
Query: 521 ------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAP 566
DI +N+LLD +SDFG+A + ++ + + GT YVAP
Sbjct: 117 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP 176
Query: 567 DYRKK-------CDVYSFRVLALEVIKGKHP 590
+ K+ DV+S ++ ++ G+ P
Sbjct: 177 ELLKRREFHAEPVDVWSCGIVLTAMLAGELP 207
>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 82/205 (40%), Gaps = 37/205 (18%)
Query: 420 INDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ D+D +G G +G V A ++E +AVK + D + K+ EI +
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EIXINKML 61
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------------ 520
H N+VKFYG L EY G L + D E
Sbjct: 62 NHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLH 121
Query: 521 ------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPDYRKK- 571
DI +N+LLD +SDFG+A + ++ + + GT YVAP+ K+
Sbjct: 122 GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRR 181
Query: 572 ------CDVYSFRVLALEVIKGKHP 590
DV+S ++ ++ G+ P
Sbjct: 182 EFHAEPVDVWSCGIVLTAMLAGELP 206
>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRB|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRG|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRH|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRM|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRN|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRO|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2C3J|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3K|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3L|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2CGU|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGV|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGW|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGX|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|3NLB|A Chain A, Novel Kinase Profile Highlights The Temporal Basis Of
Context Dependent Checkpoint Pathways To Cell Death
Length = 297
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 49/211 (23%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK-- 477
+ D+D +G G +G V LAV + + +I D K E + K
Sbjct: 6 VEDWDLVQTLGEGAYGEVQ---------LAVNRVTEEAVAVKIVDMKRAVDCPENIKKEI 56
Query: 478 -----IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------ 520
+ H N+VKFYG L EY G L + D E
Sbjct: 57 CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 116
Query: 521 ------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAP 566
DI +N+LLD +SDFG+A + ++ + + GT YVAP
Sbjct: 117 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP 176
Query: 567 DYRKK-------CDVYSFRVLALEVIKGKHP 590
+ K+ DV+S ++ ++ G+ P
Sbjct: 177 ELLKRREFHAEPVDVWSCGIVLTAMLAGELP 207
>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint
Kinase Chk1
pdb|1NVQ|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1UCN-01
pdb|1NVR|A Chain A, The Complex Structure Of Checkpoint Kinase
Chk1STAUROSPORINE
pdb|1NVS|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1SB218078
pdb|2WMQ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMR|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMS|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMT|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMU|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMV|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMX|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMW|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEY|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XF0|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEZ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2X8D|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2X8I|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YM3|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM4|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM5|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM6|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM7|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM8|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YDI|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 289
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 49/211 (23%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK-- 477
+ D+D +G G +G V LAV + + +I D K E + K
Sbjct: 6 VEDWDLVQTLGEGAYGEVQ---------LAVNRVTEEAVAVKIVDMKRAVDCPENIKKEI 56
Query: 478 -----IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------ 520
+ H N+VKFYG L EY G L + D E
Sbjct: 57 CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 116
Query: 521 ------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAP 566
DI +N+LLD +SDFG+A + ++ + + GT YVAP
Sbjct: 117 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP 176
Query: 567 DYRKK-------CDVYSFRVLALEVIKGKHP 590
+ K+ DV+S ++ ++ G+ P
Sbjct: 177 ELLKRREFHAEPVDVWSCGIVLTAMLAGELP 207
>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine
Analog
pdb|2GDO|A Chain A, 4-(aminoalkylamino)-3-benzimidazole-quinolinones As Potent
Chk1 Inhibitors
Length = 295
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 49/211 (23%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK-- 477
+ D+D +G G +G V LAV + + +I D K E + K
Sbjct: 6 VEDWDLVQTLGEGAYGEVQ---------LAVNRVTEEAVAVKIVDMKRAVDCPENIKKEI 56
Query: 478 -----IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------ 520
+ H N+VKFYG L EY G L + D E
Sbjct: 57 CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 116
Query: 521 ------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAP 566
DI +N+LLD +SDFG+A + ++ + + GT YVAP
Sbjct: 117 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP 176
Query: 567 DYRKK-------CDVYSFRVLALEVIKGKHP 590
+ K+ DV+S ++ ++ G+ P
Sbjct: 177 ELLKRREFHAEPVDVWSCGIVLTAMLAGELP 207
>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017
pdb|2E9V|B Chain B, Structure Of H-Chk1 Complexed With A859017
Length = 268
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 49/211 (23%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK-- 477
+ D+D +G G +G V LAV + + +I D K E + K
Sbjct: 5 VEDWDLVQTLGEGAYGEVQ---------LAVNRVTEEAVAVKIVDMKRAVDCPENIKKEI 55
Query: 478 -----IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------ 520
+ H N+VKFYG L EY G L + D E
Sbjct: 56 CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 115
Query: 521 ------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAP 566
DI +N+LLD +SDFG+A + ++ + + GT YVAP
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP 175
Query: 567 DYRKK-------CDVYSFRVLALEVIKGKHP 590
+ K+ DV+S ++ ++ G+ P
Sbjct: 176 ELLKRREFHAEPVDVWSCGIVLTAMLAGELP 206
>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 82/205 (40%), Gaps = 37/205 (18%)
Query: 420 INDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ D+D +G G +G V A ++E +AVK + D + K+ EI +
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EIXINKML 61
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------------ 520
H N+VKFYG L EY G L + D E
Sbjct: 62 NHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLH 121
Query: 521 ------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPDYRKK- 571
DI +N+LLD +SDFG+A + ++ + + GT YVAP+ K+
Sbjct: 122 GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAPELLKRR 181
Query: 572 ------CDVYSFRVLALEVIKGKHP 590
DV+S ++ ++ G+ P
Sbjct: 182 EFHAEPVDVWSCGIVLTAMLAGELP 206
>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
pdb|2YDJ|B Chain B, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 82/205 (40%), Gaps = 37/205 (18%)
Query: 420 INDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ D+D +G G +G V A ++E +AVK + D + K+ EI +
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EIXINKML 62
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------------ 520
H N+VKFYG L EY G L + D E
Sbjct: 63 NHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLH 122
Query: 521 ------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPDYRKK- 571
DI +N+LLD +SDFG+A + ++ + + GT YVAP+ K+
Sbjct: 123 GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAPELLKRR 182
Query: 572 ------CDVYSFRVLALEVIKGKHP 590
DV+S ++ ++ G+ P
Sbjct: 183 EFHAEPVDVWSCGIVLTAMLAGELP 207
>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994
pdb|2YWP|A Chain A, Crystal Structure Of Chk1 With A Urea Inhibitor
pdb|2E9N|A Chain A, Structure Of H-chk1 Complexed With A767085
pdb|2E9O|A Chain A, Structure Of H-Chk1 Complexed With Aa582939
pdb|2E9P|A Chain A, Structure Of H-Chk1 Complexed With A771129
pdb|2E9U|A Chain A, Structure Of H-Chk1 Complexed With A780125
Length = 269
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 49/211 (23%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK-- 477
+ D+D +G G +G V LAV + + +I D K E + K
Sbjct: 5 VEDWDLVQTLGEGAYGEVQ---------LAVNRVTEEAVAVKIVDMKRAVDCPENIKKEI 55
Query: 478 -----IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------ 520
+ H N+VKFYG L EY G L + D E
Sbjct: 56 CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 115
Query: 521 ------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAP 566
DI +N+LLD +SDFG+A + ++ + + GT YVAP
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP 175
Query: 567 DYRKK-------CDVYSFRVLALEVIKGKHP 590
+ K+ DV+S ++ ++ G+ P
Sbjct: 176 ELLKRREFHAEPVDVWSCGIVLTAMLAGELP 206
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 109/294 (37%), Gaps = 69/294 (23%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEF-FAEIEALTKIRHRNIVKF 486
+G G +G V + + +A+KKF L SD K+ EI+ L ++RH N+V
Sbjct: 33 VGEGSYGMVMKCRNKDTGRIVAIKKF---LESDDDKMVKKIAMREIKLLKQLRHENLVNL 89
Query: 487 YGFCSHARHSILIYEYLKRGSLA------TNLSNDAAAEEL------------------D 522
C + L++E++ L L + L D
Sbjct: 90 LEVCKKKKRWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRD 149
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKCDVY 575
I +N+L+ + DFG A+ L + V T Y AP+ Y K DV+
Sbjct: 150 IKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDVW 209
Query: 576 SFRVLALEVIKGK-------------HPRGFVSSILP--------SPSVINMRLDEM--- 611
+ L E+ G+ H + +++P +P +RL E+
Sbjct: 210 AIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKER 269
Query: 612 --LDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663
L+ R P S ++++A CL + P+ RP + F + F+
Sbjct: 270 EPLERRYPKLSE-------VVIDLAKKCLHIDPDKRPFCAELLHHDFFQMDGFA 316
>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54
pdb|2QHM|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2a
pdb|2QHN|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1a
pdb|3TKH|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S01
pdb|3TKI|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S25
Length = 323
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 49/211 (23%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK-- 477
+ D+D +G G +G V LAV + + +I D K E + K
Sbjct: 6 VEDWDLVQTLGEGAYGEVQ---------LAVNRVTEEAVAVKIVDMKRAVDCPENIKKEI 56
Query: 478 -----IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------ 520
+ H N+VKFYG L EY G L + D E
Sbjct: 57 CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 116
Query: 521 ------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAP 566
DI +N+LLD +SDFG+A + ++ + + GT YVAP
Sbjct: 117 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP 176
Query: 567 DYRKK-------CDVYSFRVLALEVIKGKHP 590
+ K+ DV+S ++ ++ G+ P
Sbjct: 177 ELLKRREFHAEPVDVWSCGIVLTAMLAGELP 207
>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YER|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YEX|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YDK|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 49/211 (23%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK-- 477
+ D+D +G G +G V LAV + + +I D K E + K
Sbjct: 6 VEDWDLVQTLGEGAYGEVQ---------LAVNRVTEEAVAVKIVDMKRAVDCPENIKKEI 56
Query: 478 -----IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------ 520
+ H N+VKFYG L EY G L + D E
Sbjct: 57 CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 116
Query: 521 ------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAP 566
DI +N+LLD +SDFG+A + ++ + + GT YVAP
Sbjct: 117 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP 176
Query: 567 DYRKK-------CDVYSFRVLALEVIKGKHP 590
+ K+ DV+S ++ ++ G+ P
Sbjct: 177 ELLKRREFHAEPVDVWSCGIVLTAMLAGELP 207
>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20
pdb|2HXL|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1
pdb|2HXQ|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2
pdb|2HY0|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 22
pdb|3F9N|A Chain A, Crystal Structure Of Chk1 Kinase In Complex With Inhibitor
38
Length = 322
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 49/211 (23%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK-- 477
+ D+D +G G +G V LAV + + +I D K E + K
Sbjct: 5 VEDWDLVQTLGEGAYGEVQ---------LAVNRVTEEAVAVKIVDMKRAVDCPENIKKEI 55
Query: 478 -----IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------ 520
+ H N+VKFYG L EY G L + D E
Sbjct: 56 CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 115
Query: 521 ------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAP 566
DI +N+LLD +SDFG+A + ++ + + GT YVAP
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP 175
Query: 567 DYRKK-------CDVYSFRVLALEVIKGKHP 590
+ K+ DV+S ++ ++ G+ P
Sbjct: 176 ELLKRREFHAEPVDVWSCGIVLTAMLAGELP 206
>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
pdb|2BVA|B Chain B, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 292
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 34/192 (17%)
Query: 429 IGSGRHGSVYRAELPSK-EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G V A + S + +AVKK + L Q ++ F E+ + +H N+V+ Y
Sbjct: 28 IGEGSTGIVCIATVRSSGKLVAVKKMD--LRKQQ--RRELLFNEVVIMRDYQHENVVEMY 83
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-----------------------LDIS 524
++ E+L+ G+L +++ EE DI
Sbjct: 84 NSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIK 143
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFR 578
S ++LL + + +SDFG + + LVGT ++AP+ Y + D++S
Sbjct: 144 SDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLG 203
Query: 579 VLALEVIKGKHP 590
++ +E++ G+ P
Sbjct: 204 IMVIEMVDGEPP 215
>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A
Pyrrolo-Pyridine Inhibitor
Length = 273
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 49/211 (23%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK-- 477
+ D+D +G G +G V LAV + + +I D K E + K
Sbjct: 6 VEDWDLVQTLGEGAYGEVQ---------LAVNRVTEEAVAVKIVDMKRAVDCPENIKKEI 56
Query: 478 -----IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------ 520
+ H N+VKFYG L EY G L + D E
Sbjct: 57 CINAMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 116
Query: 521 ------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAP 566
DI +N+LLD +SDFG+A + ++ + + GT YVAP
Sbjct: 117 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP 176
Query: 567 DYRKK-------CDVYSFRVLALEVIKGKHP 590
+ K+ DV+S ++ ++ G+ P
Sbjct: 177 ELLKRREFHAEPVDVWSCGIVLTAMLAGELP 207
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 34/192 (17%)
Query: 429 IGSGRHGSVYRAELPSK-EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G V A + S + +AVKK + L Q ++ F E+ + +H N+V+ Y
Sbjct: 39 IGEGSTGIVCIATVRSSGKLVAVKKMD--LRKQQ--RRELLFNEVVIMRDYQHENVVEMY 94
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-----------------------LDIS 524
++ E+L+ G+L +++ EE DI
Sbjct: 95 NSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIK 154
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFR 578
S ++LL + + +SDFG + + LVGT ++AP+ Y + D++S
Sbjct: 155 SDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLG 214
Query: 579 VLALEVIKGKHP 590
++ +E++ G+ P
Sbjct: 215 IMVIEMVDGEPP 226
>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Pf-03758309
pdb|4APP|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With (S)-N-(5-(3-Benzyl-1-Methylpiperazine-4-
Carbonyl)-6,6-Dimethyl-1,4,5,6-Tetrahydropyrrolo(3,4-C)
Pyrazol-3-Yl)-3-Phenoxybenzamide
Length = 296
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 34/192 (17%)
Query: 429 IGSGRHGSVYRAELPSK-EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G V A + S + +AVKK + L Q ++ F E+ + +H N+V+ Y
Sbjct: 32 IGEGSTGIVCIATVRSSGKLVAVKKMD--LRKQQ--RRELLFNEVVIMRDYQHENVVEMY 87
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-----------------------LDIS 524
++ E+L+ G+L +++ EE DI
Sbjct: 88 NSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIK 147
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFR 578
S ++LL + + +SDFG + + LVGT ++AP+ Y + D++S
Sbjct: 148 SDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLG 207
Query: 579 VLALEVIKGKHP 590
++ +E++ G+ P
Sbjct: 208 IMVIEMVDGEPP 219
>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
pdb|3JVS|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
Length = 271
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 49/211 (23%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK-- 477
+ D+D +G G +G V LAV + + +I D K E + K
Sbjct: 5 VEDWDLVQTLGEGAYGEVQ---------LAVNRVTEEAVAVKIVDMKRAVDCPENIKKEI 55
Query: 478 -----IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------ 520
+ H N+VKFYG L EY G L + D E
Sbjct: 56 CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 115
Query: 521 ------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAP 566
DI +N+LLD +SDFG+A + ++ + + GT YVAP
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP 175
Query: 567 DYRKK-------CDVYSFRVLALEVIKGKHP 590
+ K+ DV+S ++ ++ G+ P
Sbjct: 176 ELLKRREFHAEPVDVWSCGIVLTAMLAGELP 206
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 108/276 (39%), Gaps = 62/276 (22%)
Query: 429 IGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G GSV + E +AVKK L ++F EIE L ++H NI
Sbjct: 36 LGKGNFGSVEMCRYDPLQDNTGEVVAVKK----LQHSTEEHLRDFEREIEILKSLQHDNI 91
Query: 484 VKFYGFCSHA--RHSILIYEYLKRGSLATNLSND-----------------AAAEEL--- 521
VK+ G C A R+ LI EYL GSL L E L
Sbjct: 92 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK 151
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD------ 567
D++++N+L++ E++ + DFG+ K L D + AP+
Sbjct: 152 RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESK 211
Query: 568 YRKKCDVYSFRVLALEVI----KGKHPRGFVSSIL---PSPSVINMRLDEML--DPRLPP 618
+ DV+SF V+ E+ K K P ++ +I L E+L + RLP
Sbjct: 212 FSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPR 271
Query: 619 PS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTIT 652
P PD I + C + + RP+ + +
Sbjct: 272 PDGCPD------EIYMIMTECWNNNVNQRPSFRDLA 301
>pdb|4FST|A Chain A, Crystal Structure Of The Chk1
Length = 269
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 49/211 (23%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK-- 477
+ D+D +G G +G V LAV + + +I D K E + K
Sbjct: 5 VEDWDLVQTLGEGAYGEVQ---------LAVNRVTEEAVAVKIVDMKRAVDCPENIKKEI 55
Query: 478 -----IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------ 520
+ H N+VKFYG L EY G L + D E
Sbjct: 56 CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 115
Query: 521 ------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAP 566
DI +N+LLD +SDFG+A + ++ + + GT YVAP
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAP 175
Query: 567 DYRKK-------CDVYSFRVLALEVIKGKHP 590
+ K+ DV+S ++ ++ G+ P
Sbjct: 176 ELLKRREFHAEPVDVWSCGIVLTAMLAGELP 206
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 34/192 (17%)
Query: 429 IGSGRHGSVYRAELPSK-EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G V A + S + +AVKK + L Q ++ F E+ + +H N+V+ Y
Sbjct: 37 IGEGSTGIVCIATVRSSGKLVAVKKMD--LRKQQ--RRELLFNEVVIMRDYQHENVVEMY 92
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-----------------------LDIS 524
++ E+L+ G+L +++ EE DI
Sbjct: 93 NSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIK 152
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFR 578
S ++LL + + +SDFG + + LVGT ++AP+ Y + D++S
Sbjct: 153 SDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLG 212
Query: 579 VLALEVIKGKHP 590
++ +E++ G+ P
Sbjct: 213 IMVIEMVDGEPP 224
>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1
pdb|4FSQ|A Chain A, Crystal Structure Of The Chk1
pdb|4FSR|A Chain A, Crystal Structure Of The Chk1
pdb|4FT0|A Chain A, Crystal Structure Of The Chk1
pdb|4FT5|A Chain A, Crystal Structure Of The Chk1
pdb|4FT7|A Chain A, Crystal Structure Of The Chk1
pdb|4FT9|A Chain A, Crystal Structure Of The Chk1
pdb|4FTI|A Chain A, Crystal Structure Of The Chk1
pdb|4FTJ|A Chain A, Crystal Structure Of The Chk1
pdb|4FTK|A Chain A, Crystal Structure Of The Chk1
pdb|4FTL|A Chain A, Crystal Structure Of The Chk1
pdb|4FTM|A Chain A, Crystal Structure Of The Chk1
pdb|4FTO|A Chain A, Crystal Structure Of The Chk1
pdb|4FTR|A Chain A, Crystal Structure Of The Chk1
pdb|4FTT|A Chain A, Crystal Structure Of The Chk1
pdb|4FTU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 49/211 (23%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK-- 477
+ D+D +G G +G V LAV + + +I D K E + K
Sbjct: 5 VEDWDLVQTLGEGAYGEVQ---------LAVNRVTEEAVAVKIVDMKRAVDCPENIKKEI 55
Query: 478 -----IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------ 520
+ H N+VKFYG L EY G L + D E
Sbjct: 56 CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 115
Query: 521 ------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAP 566
DI +N+LLD +SDFG+A + ++ + + GT YVAP
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP 175
Query: 567 DYRKK-------CDVYSFRVLALEVIKGKHP 590
+ K+ DV+S ++ ++ G+ P
Sbjct: 176 ELLKRREFHAEPVDVWSCGIVLTAMLAGELP 206
>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1
Length = 278
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 49/211 (23%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK-- 477
+ D+D +G G +G V LAV + + +I D K E + K
Sbjct: 4 VEDWDLVQTLGEGAYGEVQ---------LAVNRVTEEAVAVKIVDMKRAVDCPENIKKEI 54
Query: 478 -----IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------ 520
+ H N+VKFYG L EY G L + D E
Sbjct: 55 CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 114
Query: 521 ------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAP 566
DI +N+LLD +SDFG+A + ++ + + GT YVAP
Sbjct: 115 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP 174
Query: 567 DYRKK-------CDVYSFRVLALEVIKGKHP 590
+ K+ DV+S ++ ++ G+ P
Sbjct: 175 ELLKRREFHAEPVDVWSCGIVLTAMLAGELP 205
>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human
Chk1 Kinase Domain
pdb|3OT8|A Chain A, X-Ray Crystal Structure Of Compound 17r Bound To Human
Chk1 Kinase Domain
pdb|3PA3|A Chain A, X-Ray Crystal Structure Of Compound 70 Bound To Human Chk1
Kinase Domain
pdb|3PA4|A Chain A, X-Ray Crystal Structure Of Compound 2a Bound To Human Chk1
Kinase Domain
pdb|3PA5|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
pdb|3U9N|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
Length = 273
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 49/211 (23%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK-- 477
+ D+D +G G +G V LAV + + +I D K E + K
Sbjct: 5 VEDWDLVQTLGEGAYGEVQ---------LAVNRVTEEAVAVKIVDMKRAVDCPENIKKEI 55
Query: 478 -----IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------ 520
+ H N+VKFYG L EY G L + D E
Sbjct: 56 CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 115
Query: 521 ------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAP 566
DI +N+LLD +SDFG+A + ++ + + GT YVAP
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP 175
Query: 567 DYRKK-------CDVYSFRVLALEVIKGKHP 590
+ K+ DV+S ++ ++ G+ P
Sbjct: 176 ELLKRREFHAEPVDVWSCGIVLTAMLAGELP 206
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 108/276 (39%), Gaps = 62/276 (22%)
Query: 429 IGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G GSV + E +AVKK L ++F EIE L ++H NI
Sbjct: 36 LGKGNFGSVEMCRYDPLQDNTGEVVAVKK----LQHSTEEHLRDFEREIEILKSLQHDNI 91
Query: 484 VKFYGFCSHA--RHSILIYEYLKRGSLATNLSND-----------------AAAEEL--- 521
VK+ G C A R+ LI EYL GSL L E L
Sbjct: 92 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK 151
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD------ 567
D++++N+L++ E++ + DFG+ K L D + AP+
Sbjct: 152 RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESK 211
Query: 568 YRKKCDVYSFRVLALEVI----KGKHPRGFVSSIL---PSPSVINMRLDEML--DPRLPP 618
+ DV+SF V+ E+ K K P ++ +I L E+L + RLP
Sbjct: 212 FSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPR 271
Query: 619 PS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTIT 652
P PD I + C + + RP+ + +
Sbjct: 272 PDGCPD------EIYMIMTECWNNNVNQRPSFRDLA 301
>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1
pdb|4GH2|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 49/211 (23%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK-- 477
+ D+D +G G +G V LAV + + +I D K E + K
Sbjct: 5 VEDWDLVQTLGEGAYGEVQ---------LAVNRVTEEAVAVKIVDMKRAVDCPENIKKEI 55
Query: 478 -----IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------ 520
+ H N+VKFYG L EY G L + D E
Sbjct: 56 CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 115
Query: 521 ------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAP 566
DI +N+LLD +SDFG+A + ++ + + GT YVAP
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAP 175
Query: 567 DYRKK-------CDVYSFRVLALEVIKGKHP 590
+ K+ DV+S ++ ++ G+ P
Sbjct: 176 ELLKRREFHAEPVDVWSCGIVLTAMLAGELP 206
>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1
pdb|4FTA|A Chain A, Crystal Structure Of The Chk1
pdb|4FTC|A Chain A, Crystal Structure Of The Chk1
pdb|4FTN|A Chain A, Crystal Structure Of The Chk1
pdb|4FTQ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 49/211 (23%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK-- 477
+ D+D +G G +G V LAV + + +I D K E + K
Sbjct: 5 VEDWDLVQTLGEGAYGEVQ---------LAVNRVTEEAVAVKIVDMKRAVDCPENIKKEI 55
Query: 478 -----IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------ 520
+ H N+VKFYG L EY G L + D E
Sbjct: 56 CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 115
Query: 521 ------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAP 566
DI +N+LLD +SDFG+A + ++ + + GT YVAP
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAP 175
Query: 567 DYRKK-------CDVYSFRVLALEVIKGKHP 590
+ K+ DV+S ++ ++ G+ P
Sbjct: 176 ELLKRREFHAEPVDVWSCGIVLTAMLAGELP 206
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 109/276 (39%), Gaps = 62/276 (22%)
Query: 429 IGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G GSV + E +AVKK L ++F EIE L ++H NI
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKK----LQHSTEEHLRDFEREIEILKSLQHDNI 73
Query: 484 VKFYGFCSHA--RHSILIYEYLKRGSLATNLSND-----------------AAAEEL--- 521
VK+ G C A R+ LI EYL GSL L E L
Sbjct: 74 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK 133
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD------ 567
D++++N+L++ E++ + DFG+ K L D + + AP+
Sbjct: 134 RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESK 193
Query: 568 YRKKCDVYSFRVLALEVI----KGKHPRGFVSSIL---PSPSVINMRLDEML--DPRLPP 618
+ DV+SF V+ E+ K K P ++ +I L E+L + RLP
Sbjct: 194 FSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPR 253
Query: 619 PS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTIT 652
P PD I + C + + RP+ + +
Sbjct: 254 PDGCPD------EIYMIMTECWNNNVNQRPSFRDLA 283
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 139/304 (45%), Gaps = 34/304 (11%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
NLTNL L L +N +T + P + NL +L +L L N S S++ L+SL+ L F
Sbjct: 105 NLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTI--SDISALSGLTSLQQLN-FG 159
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNI---CRNGALERVIVGGNHFRGPIPKC 117
N ++ P + NL LE + N +I + LE +I N P
Sbjct: 160 NQVTDLKP--LANLT----TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG 213
Query: 118 LRNCPNLVRISLEGNNMR--GTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTL 175
+ NL +SL GN ++ GT++ NLT LD++ NN +A G KL+ L
Sbjct: 214 I--LTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLA-NNQISNLAPLSG-LTKLTEL 265
Query: 176 NVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLP 235
+ N I+ PL L+ L +L+ N + P L +LT L L N + P
Sbjct: 266 KLGANQISNISPL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 321
Query: 236 SEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSEL 295
+ SLTKL+ L S N+ S + SL NL +++L Q P L L ++++L
Sbjct: 322 --VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 375
Query: 296 ELSH 299
L+
Sbjct: 376 GLND 379
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 109/255 (42%), Gaps = 48/255 (18%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G V++ + +++ +A+K + D+I D ++ EI L++ + K+Y
Sbjct: 35 IGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQ---EITVLSQCDSPYVTKYY 91
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------DI 523
G +I EYL GS A +L +E DI
Sbjct: 92 GSYLKDTKLWIIMEYLGGGS-ALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDI 150
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSF 577
+ NVLL + ++DFG+A L + VGT ++AP+ Y K D++S
Sbjct: 151 KAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSL 210
Query: 578 RVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS-IMEVAFS 636
+ A+E+ +G+ P S + P + L P+ PP+ ++G + E +
Sbjct: 211 GITAIELARGEPPH---SELHPMKVL-------FLIPKNNPPT--LEGNYSKPLKEFVEA 258
Query: 637 CLDVSPESRPTMQTI 651
CL+ P RPT + +
Sbjct: 259 CLNKEPSFRPTAKEL 273
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 39/174 (22%)
Query: 475 LTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDA----------AAE----- 519
L+ + H I++ +G A+ +I +Y++ G L + L AAE
Sbjct: 60 LSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLAL 119
Query: 520 ---------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD--- 567
D+ +N+LLD ++DFG AK++ PD + L GT Y+AP+
Sbjct: 120 EYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYV-PDVT--YXLCGTPDYIAPEVVS 176
Query: 568 ---YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618
Y K D +SF +L E++ G P +++ ++N L R PP
Sbjct: 177 TKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAEL------RFPP 224
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 109/278 (39%), Gaps = 66/278 (23%)
Query: 429 IGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G GSV + E +AVKK L ++F EIE L ++H NI
Sbjct: 19 LGKGNFGSVEMCRYDPLQDNTGEVVAVKK----LQHSTEEHLRDFEREIEILKSLQHDNI 74
Query: 484 VKFYGFCSHA--RHSILIYEYLKRGSLATNLSNDAAAEELD------------------- 522
VK+ G C A R+ LI EYL GSL L E +D
Sbjct: 75 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ--KHKERIDHIKLLQYTSQICKGMEYLG 132
Query: 523 --------ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD---- 567
++++N+L++ E++ + DFG+ K L D + + AP+
Sbjct: 133 TKRYIHRNLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTE 192
Query: 568 --YRKKCDVYSFRVLALEVI----KGKHPRGFVSSIL---PSPSVINMRLDEML--DPRL 616
+ DV+SF V+ E+ K K P ++ +I L E+L + RL
Sbjct: 193 SKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRL 252
Query: 617 PPPS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTIT 652
P P PD I + C + + RP+ + +
Sbjct: 253 PRPDGCPD------EIYMIMTECWNNNVNQRPSFRDLA 284
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 107/276 (38%), Gaps = 62/276 (22%)
Query: 429 IGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G GSV + E +AVKK ++F EIE L ++H NI
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL----RDFEREIEILKSLQHDNI 73
Query: 484 VKFYGFCSHA--RHSILIYEYLKRGSLATNLSND-----------------AAAEEL--- 521
VK+ G C A R+ LI EYL GSL L E L
Sbjct: 74 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK 133
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD------ 567
D++++N+L++ E++ + DFG+ K L D + AP+
Sbjct: 134 RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESK 193
Query: 568 YRKKCDVYSFRVLALEVI----KGKHPRGFVSSIL---PSPSVINMRLDEML--DPRLPP 618
+ DV+SF V+ E+ K K P ++ +I L E+L + RLP
Sbjct: 194 FSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPR 253
Query: 619 PS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTIT 652
P PD I + C + + RP+ + +
Sbjct: 254 PDGCPD------EIYMIMTECWNNNVNQRPSFRDLA 283
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 104/255 (40%), Gaps = 55/255 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V+ +AVK S F AE + +++H+ +V+ Y
Sbjct: 16 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA-----FLAEANLMKQLQHQRLVRLYA 70
Query: 489 FCSHARHSILIYEYLKRGSLATNLSN------------DAAAE--------------ELD 522
+ I I EY++ GSL L D AA+ D
Sbjct: 71 VVTQEPIYI-ITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 129
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCD 573
+ + N+L+ ++DFG+A+ + + + ++A G ++ AP+ + K D
Sbjct: 130 LRAANILVSDTLSCKIADFGLARLI--EDNEYTAREGAKFPIKWTAPEAINYGTFTIKSD 187
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD-VQGKLISIME 632
V+SF +L E++ H R +P P + N + + L+ PD +L +M
Sbjct: 188 VWSFGILLTEIV--THGR------IPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMR 239
Query: 633 VAFSCLDVSPESRPT 647
+ C PE RPT
Sbjct: 240 L---CWKERPEDRPT 251
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 107/276 (38%), Gaps = 62/276 (22%)
Query: 429 IGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G GSV + E +AVKK ++F EIE L ++H NI
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL----RDFEREIEILKSLQHDNI 73
Query: 484 VKFYGFCSHA--RHSILIYEYLKRGSLATNLSND-----------------AAAEEL--- 521
VK+ G C A R+ LI EYL GSL L E L
Sbjct: 74 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK 133
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD------ 567
D++++N+L++ E++ + DFG+ K L D + AP+
Sbjct: 134 RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESK 193
Query: 568 YRKKCDVYSFRVLALEVI----KGKHPRGFVSSIL---PSPSVINMRLDEML--DPRLPP 618
+ DV+SF V+ E+ K K P ++ +I L E+L + RLP
Sbjct: 194 FSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPR 253
Query: 619 PS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTIT 652
P PD I + C + + RP+ + +
Sbjct: 254 PDGCPD------EIYMIMTECWNNNVNQRPSFRDLA 283
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 104/255 (40%), Gaps = 55/255 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V+ +AVK S F AE + +++H+ +V+ Y
Sbjct: 27 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA-----FLAEANLMKQLQHQRLVRLYA 81
Query: 489 FCSHARHSILIYEYLKRGSLATNLSN------------DAAAE--------------ELD 522
+ I I EY++ GSL L D AA+ D
Sbjct: 82 VVTQEPIYI-ITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 140
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCD 573
+ + N+L+ ++DFG+A+ + + + ++A G ++ AP+ + K D
Sbjct: 141 LRAANILVSDTLSCKIADFGLARLI--EDNEYTAREGAKFPIKWTAPEAINYGTFTIKSD 198
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD-VQGKLISIME 632
V+SF +L E++ H R +P P + N + + L+ PD +L +M
Sbjct: 199 VWSFGILLTEIV--THGR------IPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMR 250
Query: 633 VAFSCLDVSPESRPT 647
+ C PE RPT
Sbjct: 251 L---CWKERPEDRPT 262
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 107/276 (38%), Gaps = 62/276 (22%)
Query: 429 IGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G GSV + E +AVKK ++F EIE L ++H NI
Sbjct: 16 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL----RDFEREIEILKSLQHDNI 71
Query: 484 VKFYGFCSHA--RHSILIYEYLKRGSLATNLSND-----------------AAAEEL--- 521
VK+ G C A R+ LI EYL GSL L E L
Sbjct: 72 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK 131
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD------ 567
D++++N+L++ E++ + DFG+ K L D + AP+
Sbjct: 132 RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESK 191
Query: 568 YRKKCDVYSFRVLALEVI----KGKHPRGFVSSIL---PSPSVINMRLDEML--DPRLPP 618
+ DV+SF V+ E+ K K P ++ +I L E+L + RLP
Sbjct: 192 FSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPR 251
Query: 619 PS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTIT 652
P PD I + C + + RP+ + +
Sbjct: 252 PDGCPD------EIYMIMTECWNNNVNQRPSFRDLA 281
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 108/276 (39%), Gaps = 62/276 (22%)
Query: 429 IGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G GSV + E +AVKK L ++F EIE L ++H NI
Sbjct: 49 LGKGNFGSVEMCRYDPLQDNTGEVVAVKK----LQHSTEEHLRDFEREIEILKSLQHDNI 104
Query: 484 VKFYGFCSHA--RHSILIYEYLKRGSLATNLSND-----------------AAAEEL--- 521
VK+ G C A R+ LI EYL GSL L E L
Sbjct: 105 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK 164
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD------ 567
D++++N+L++ E++ + DFG+ K L D + AP+
Sbjct: 165 RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESK 224
Query: 568 YRKKCDVYSFRVLALEVI----KGKHPRGFVSSIL---PSPSVINMRLDEML--DPRLPP 618
+ DV+SF V+ E+ K K P ++ +I L E+L + RLP
Sbjct: 225 FSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPR 284
Query: 619 PS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTIT 652
P PD I + C + + RP+ + +
Sbjct: 285 PDGCPD------EIYMIMTECWNNNVNQRPSFRDLA 314
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 108/276 (39%), Gaps = 62/276 (22%)
Query: 429 IGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G GSV + E +AVKK L ++F EIE L ++H NI
Sbjct: 17 LGKGNFGSVEMCRYDPLQDNTGEVVAVKK----LQHSTEEHLRDFEREIEILKSLQHDNI 72
Query: 484 VKFYGFCSHA--RHSILIYEYLKRGSLATNLSND-----------------AAAEEL--- 521
VK+ G C A R+ LI EYL GSL L E L
Sbjct: 73 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK 132
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD------ 567
D++++N+L++ E++ + DFG+ K L D + AP+
Sbjct: 133 RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESK 192
Query: 568 YRKKCDVYSFRVLALEVI----KGKHPRGFVSSIL---PSPSVINMRLDEML--DPRLPP 618
+ DV+SF V+ E+ K K P ++ +I L E+L + RLP
Sbjct: 193 FSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPR 252
Query: 619 PS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTIT 652
P PD I + C + + RP+ + +
Sbjct: 253 PDGCPD------EIYMIMTECWNNNVNQRPSFRDLA 282
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 104/255 (40%), Gaps = 55/255 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V+ +AVK S F AE + +++H+ +V+ Y
Sbjct: 26 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA-----FLAEANLMKQLQHQRLVRLYA 80
Query: 489 FCSHARHSILIYEYLKRGSLATNLSN------------DAAAE--------------ELD 522
+ I I EY++ GSL L D AA+ D
Sbjct: 81 VVTQEPIYI-ITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 139
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCD 573
+ + N+L+ ++DFG+A+ + + + ++A G ++ AP+ + K D
Sbjct: 140 LRAANILVSDTLSCKIADFGLARLI--EDNEYTAREGAKFPIKWTAPEAINYGTFTIKSD 197
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD-VQGKLISIME 632
V+SF +L E++ H R +P P + N + + L+ PD +L +M
Sbjct: 198 VWSFGILLTEIV--THGR------IPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMR 249
Query: 633 VAFSCLDVSPESRPT 647
+ C PE RPT
Sbjct: 250 L---CWKERPEDRPT 261
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 107/276 (38%), Gaps = 62/276 (22%)
Query: 429 IGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G GSV + E +AVKK ++F EIE L ++H NI
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL----RDFEREIEILKSLQHDNI 76
Query: 484 VKFYGFCSHA--RHSILIYEYLKRGSLATNLSND-----------------AAAEEL--- 521
VK+ G C A R+ LI EYL GSL L E L
Sbjct: 77 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK 136
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD------ 567
D++++N+L++ E++ + DFG+ K L D + AP+
Sbjct: 137 RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESK 196
Query: 568 YRKKCDVYSFRVLALEVI----KGKHPRGFVSSIL---PSPSVINMRLDEML--DPRLPP 618
+ DV+SF V+ E+ K K P ++ +I L E+L + RLP
Sbjct: 197 FSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPR 256
Query: 619 PS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTIT 652
P PD I + C + + RP+ + +
Sbjct: 257 PDGCPD------EIYMIMTECWNNNVNQRPSFRDLA 286
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 104/255 (40%), Gaps = 55/255 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V+ +AVK S F AE + +++H+ +V+ Y
Sbjct: 31 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA-----FLAEANLMKQLQHQRLVRLYA 85
Query: 489 FCSHARHSILIYEYLKRGSLATNLSN------------DAAAE--------------ELD 522
+ I I EY++ GSL L D AA+ D
Sbjct: 86 VVTQEPIYI-ITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 144
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCD 573
+ + N+L+ ++DFG+A+ + + + ++A G ++ AP+ + K D
Sbjct: 145 LRAANILVSDTLSCKIADFGLARLI--EDNEYTAREGAKFPIKWTAPEAINYGTFTIKSD 202
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD-VQGKLISIME 632
V+SF +L E++ H R +P P + N + + L+ PD +L +M
Sbjct: 203 VWSFGILLTEIV--THGR------IPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMR 254
Query: 633 VAFSCLDVSPESRPT 647
+ C PE RPT
Sbjct: 255 L---CWKERPEDRPT 266
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 104/255 (40%), Gaps = 55/255 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V+ +AVK S F AE + +++H+ +V+ Y
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA-----FLAEANLMKQLQHQRLVRLYA 75
Query: 489 FCSHARHSILIYEYLKRGSLATNLSN------------DAAAE--------------ELD 522
+ I I EY++ GSL L D AA+ D
Sbjct: 76 VVTQEPIYI-ITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 134
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCD 573
+ + N+L+ ++DFG+A+ + + + ++A G ++ AP+ + K D
Sbjct: 135 LRAANILVSDTLSCKIADFGLARLI--EDNEYTAREGAKFPIKWTAPEAINYGTFTIKSD 192
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD-VQGKLISIME 632
V+SF +L E++ H R +P P + N + + L+ PD +L +M
Sbjct: 193 VWSFGILLTEIV--THGR------IPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMR 244
Query: 633 VAFSCLDVSPESRPT 647
+ C PE RPT
Sbjct: 245 L---CWKERPEDRPT 256
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 108/276 (39%), Gaps = 62/276 (22%)
Query: 429 IGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G GSV + E +AVKK L ++F EIE L ++H NI
Sbjct: 23 LGKGNFGSVEMCRYDPLQDNTGEVVAVKK----LQHSTEEHLRDFEREIEILKSLQHDNI 78
Query: 484 VKFYGFCSHA--RHSILIYEYLKRGSLATNLSND-----------------AAAEEL--- 521
VK+ G C A R+ LI EYL GSL L E L
Sbjct: 79 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK 138
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD------ 567
D++++N+L++ E++ + DFG+ K L D + AP+
Sbjct: 139 RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESK 198
Query: 568 YRKKCDVYSFRVLALEVI----KGKHPRGFVSSIL---PSPSVINMRLDEML--DPRLPP 618
+ DV+SF V+ E+ K K P ++ +I L E+L + RLP
Sbjct: 199 FSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPR 258
Query: 619 PS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTIT 652
P PD I + C + + RP+ + +
Sbjct: 259 PDGCPD------EIYMIMTECWNNNVNQRPSFRDLA 288
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 107/276 (38%), Gaps = 62/276 (22%)
Query: 429 IGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G GSV + E +AVKK ++F EIE L ++H NI
Sbjct: 24 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL----RDFEREIEILKSLQHDNI 79
Query: 484 VKFYGFCSHA--RHSILIYEYLKRGSLATNLSND-----------------AAAEEL--- 521
VK+ G C A R+ LI EYL GSL L E L
Sbjct: 80 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK 139
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD------ 567
D++++N+L++ E++ + DFG+ K L D + AP+
Sbjct: 140 RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESK 199
Query: 568 YRKKCDVYSFRVLALEVI----KGKHPRGFVSSIL---PSPSVINMRLDEML--DPRLPP 618
+ DV+SF V+ E+ K K P ++ +I L E+L + RLP
Sbjct: 200 FSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPR 259
Query: 619 PS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTIT 652
P PD I + C + + RP+ + +
Sbjct: 260 PDGCPD------EIYMIMTECWNNNVNQRPSFRDLA 289
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 108/276 (39%), Gaps = 62/276 (22%)
Query: 429 IGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G GSV + E +AVKK L ++F EIE L ++H NI
Sbjct: 22 LGKGNFGSVEMCRYDPLQDNTGEVVAVKK----LQHSTEEHLRDFEREIEILKSLQHDNI 77
Query: 484 VKFYGFCSHA--RHSILIYEYLKRGSLATNLSND-----------------AAAEEL--- 521
VK+ G C A R+ LI EYL GSL L E L
Sbjct: 78 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK 137
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD------ 567
D++++N+L++ E++ + DFG+ K L D + AP+
Sbjct: 138 RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESK 197
Query: 568 YRKKCDVYSFRVLALEVI----KGKHPRGFVSSIL---PSPSVINMRLDEML--DPRLPP 618
+ DV+SF V+ E+ K K P ++ +I L E+L + RLP
Sbjct: 198 FSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPR 257
Query: 619 PS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTIT 652
P PD I + C + + RP+ + +
Sbjct: 258 PDGCPD------EIYMIMTECWNNNVNQRPSFRDLA 287
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 108/276 (39%), Gaps = 62/276 (22%)
Query: 429 IGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G GSV + E +AVKK L ++F EIE L ++H NI
Sbjct: 25 LGKGNFGSVEMCRYDPLQDNTGEVVAVKK----LQHSTEEHLRDFEREIEILKSLQHDNI 80
Query: 484 VKFYGFCSHA--RHSILIYEYLKRGSLATNLSND-----------------AAAEEL--- 521
VK+ G C A R+ LI EYL GSL L E L
Sbjct: 81 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK 140
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD------ 567
D++++N+L++ E++ + DFG+ K L D + AP+
Sbjct: 141 RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESK 200
Query: 568 YRKKCDVYSFRVLALEVI----KGKHPRGFVSSIL---PSPSVINMRLDEML--DPRLPP 618
+ DV+SF V+ E+ K K P ++ +I L E+L + RLP
Sbjct: 201 FSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPR 260
Query: 619 PS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTIT 652
P PD I + C + + RP+ + +
Sbjct: 261 PDGCPD------EIYMIMTECWNNNVNQRPSFRDLA 290
>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 78/211 (36%), Gaps = 49/211 (23%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK-- 477
+ D+D +G G G V LAV + + +I D K E + K
Sbjct: 5 VEDWDLVQTLGEGAAGEVQ---------LAVNRVTEEAVAVKIVDMKRAVDCPENIKKEI 55
Query: 478 -----IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------ 520
+ H N+VKFYG L EY G L + D E
Sbjct: 56 CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 115
Query: 521 ------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAP 566
DI +N+LLD +SDFG+A + ++ + + GT YVAP
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP 175
Query: 567 DYRKK-------CDVYSFRVLALEVIKGKHP 590
+ K+ DV+S ++ ++ G+ P
Sbjct: 176 ELLKRREFHAEPVDVWSCGIVLTAMLAGELP 206
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 103/259 (39%), Gaps = 62/259 (23%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V+ + +AVK S Q F E + ++H +V+ Y
Sbjct: 21 LGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQA-----FLEEANLMKTLQHDKLVRLYA 75
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL--------------------------D 522
+ +I EY+ +GSL L +D + L D
Sbjct: 76 VVTREEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRD 135
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCD 573
+ + NVL+ ++DFG+A+ + + + ++A G ++ AP+ + K D
Sbjct: 136 LRAANVLVSESLMCKIADFGLARVI--EDNEYTAREGAKFPIKWTAPEAINFGCFTIKSD 193
Query: 574 VYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS--PDVQGKLI 628
V+SF +L E++ GK +P P N + L R+P PD +L
Sbjct: 194 VWSFGILLYEIVTYGK---------IPYPGRTNADVMTALSQGYRMPRVENCPD---ELY 241
Query: 629 SIMEVAFSCLDVSPESRPT 647
IM++ C E RPT
Sbjct: 242 DIMKM---CWKEKAEERPT 257
>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In
Complex With A Diaminopyrimidine Carboxamide Inhibitor
Length = 277
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 36/169 (21%)
Query: 463 ADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-- 520
A + E AE + ++ + IV+ G C A +L+ E + G L L + ++
Sbjct: 54 ALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAELGPLNKYLQQNRHVKDKN 112
Query: 521 ----------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV 558
D++++NVLL +H A +SDFG++K L+ D + + A
Sbjct: 113 IIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENXYKAQT 172
Query: 559 -GTY--RYVAPD------YRKKCDVYSFRVLALEVIK-GKHP-RGFVSS 596
G + ++ AP+ + K DV+SF VL E G+ P RG S
Sbjct: 173 HGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS 221
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 55/234 (23%)
Query: 389 REGQRSPQNSQ-GLLSILSFKGKFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF 447
+EG SQ LL +L +G F V +++ I+ DA+ +Y ++ K
Sbjct: 15 KEGHEKADPSQFELLKVLG-QGSFGKVFLVKKISGSDAR---------QLYAMKVLKKAT 64
Query: 448 LAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKF-YGFCSHARHSILIYEYLKRG 506
L V+ D++ + E + L ++ H IVK Y F + + LI ++L+ G
Sbjct: 65 LKVR--------DRVRTK----MERDILVEVNHPFIVKLHYAFQTEGK-LYLILDFLRGG 111
Query: 507 SLATNLSNDAAAEELDIS------------------------SKNVLLDLEHKAHVSDFG 542
L T LS + E D+ +N+LLD E ++DFG
Sbjct: 112 DLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFG 171
Query: 543 IAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
++K + GT Y+AP+ + + D +SF VL E++ G P
Sbjct: 172 LSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLP 225
>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 635
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 36/169 (21%)
Query: 463 ADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-- 520
A + E AE + ++ + IV+ G C A +L+ E + G L L + ++
Sbjct: 412 ALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAELGPLNKYLQQNRHVKDKN 470
Query: 521 ----------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV 558
D++++NVLL +H A +SDFG++K L+ D + + A
Sbjct: 471 IIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT 530
Query: 559 -GTY--RYVAPD------YRKKCDVYSFRVLALEVIK-GKHP-RGFVSS 596
G + ++ AP+ + K DV+SF VL E G+ P RG S
Sbjct: 531 HGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS 579
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 42/201 (20%)
Query: 429 IGSGRHGSVY--RAELPSKEFLAV--KKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG+G G V R +LP K +AV K Q +++F E + + H N+V
Sbjct: 51 IGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQ---RRDFLCEASIMGQFDHPNVV 107
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLSN-------------------------DAAAE 519
G + + +++ E+++ G+L L D
Sbjct: 108 HLEGVVTRGKPVMIVIEFMENGALDAFLRKHDGQFTVIQLVGMLRGIAAGMRYLADMGYV 167
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK--- 570
D++++N+L++ VSDFG+++ ++ D G R+ AP+ YRK
Sbjct: 168 HRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGKIPVRWTAPEAIQYRKFTS 227
Query: 571 KCDVYSFRVLALEVIK-GKHP 590
DV+S+ ++ EV+ G+ P
Sbjct: 228 ASDVWSYGIVMWEVMSYGERP 248
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 139/304 (45%), Gaps = 34/304 (11%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
NLTNL L L +N +T + P + NL +L +L L N S S++ L+SL+ L F
Sbjct: 109 NLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTI--SDISALSGLTSLQQLS-FG 163
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNI---CRNGALERVIVGGNHFRGPIPKC 117
N ++ P + NL LE + N +I + LE +I N P
Sbjct: 164 NQVTDLKP--LANLT----TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG 217
Query: 118 LRNCPNLVRISLEGNNMR--GTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTL 175
+ NL +SL GN ++ GT++ NLT LD++ NN +A G KL+ L
Sbjct: 218 I--LTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLA-NNQISNLAPLSG-LTKLTEL 269
Query: 176 NVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLP 235
+ N I+ PL L+ L +L+ N + P L +LT L L N + P
Sbjct: 270 KLGANQISNISPL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 325
Query: 236 SEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSEL 295
+ SLTKL+ L + N+ S + SL NL +++L Q P L L ++++L
Sbjct: 326 --VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 379
Query: 296 ELSH 299
L+
Sbjct: 380 GLND 383
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 125/307 (40%), Gaps = 80/307 (26%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
L NL +++ +N LT + P + NL LV + + NQ P + NL++L L LF
Sbjct: 66 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLF-- 119
Query: 62 NLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNC 121
NN T L+N
Sbjct: 120 ---------------------NNQITD--------------------------IDPLKNL 132
Query: 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLST---LNVS 178
NL R+ L N TIS+ + + +S FG ++ L+T L++S
Sbjct: 133 TNLNRLELSSN----TISDISALSGLTSLQQLS----FGNQVTDLKPLANLTTLERLDIS 184
Query: 179 MNNITR-SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL--IGHLP 235
N ++ S+ ++ NL +L ++ N+ + I G L +L +L L GNQL IG L
Sbjct: 185 SNKVSDISVLAKLTNLESL----IATNNQISDI-TPLGILTNLDELSLNGNQLKDIGTL- 238
Query: 236 SEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSEL 295
SLT L L+L+ N+ S+L P L L KL L L Q P L L L+ L
Sbjct: 239 ---ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 291
Query: 296 ELSHNFL 302
EL+ N L
Sbjct: 292 ELNENQL 298
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 107/258 (41%), Gaps = 47/258 (18%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G V A E + + +AVKK + L Q ++ F E+ + H N+V Y
Sbjct: 53 IGEGSTGIVCIATEKHTGKQVAVKKMD--LRKQQ--RRELLFNEVVIMRDYHHDNVVDMY 108
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-----------------------LDIS 524
++ E+L+ G+L +++ EE DI
Sbjct: 109 SSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLRALSYLHNQGVIHRDIK 168
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFR 578
S ++LL + + +SDFG + + LVGT ++AP+ Y + D++S
Sbjct: 169 SDSILLTSDGRIKLSDFGFCAQVSKEVPKRKXLVGTPYWMAPEVISRLPYGTEVDIWSLG 228
Query: 579 VLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCL 638
++ +E+I G+ P P + MR + LPP D+ K+ S++ L
Sbjct: 229 IMVIEMIDGEPP------YFNEPPLQAMR---RIRDSLPPRVKDLH-KVSSVLR---GFL 275
Query: 639 DVSPESRPTMQTITQQLL 656
D+ P+ + Q+LL
Sbjct: 276 DLMLVREPSQRATAQELL 293
>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 636
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 36/169 (21%)
Query: 463 ADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-- 520
A + E AE + ++ + IV+ G C A +L+ E + G L L + ++
Sbjct: 413 ALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAELGPLNKYLQQNRHVKDKN 471
Query: 521 ----------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV 558
D++++NVLL +H A +SDFG++K L+ D + + A
Sbjct: 472 IIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT 531
Query: 559 -GTY--RYVAPD------YRKKCDVYSFRVLALEVIK-GKHP-RGFVSS 596
G + ++ AP+ + K DV+SF VL E G+ P RG S
Sbjct: 532 HGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS 580
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 55/234 (23%)
Query: 389 REGQRSPQNSQ-GLLSILSFKGKFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF 447
+EG SQ LL +L +G F V +++ I+ DA+ +Y ++ K
Sbjct: 15 KEGHEKADPSQFELLKVLG-QGSFGKVFLVKKISGSDAR---------QLYAMKVLKKAT 64
Query: 448 LAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKF-YGFCSHARHSILIYEYLKRG 506
L V+ D++ + E + L ++ H IVK Y F + + LI ++L+ G
Sbjct: 65 LKVR--------DRVRTK----MERDILVEVNHPFIVKLHYAFQTEGK-LYLILDFLRGG 111
Query: 507 SLATNLSNDAAAEELDIS------------------------SKNVLLDLEHKAHVSDFG 542
L T LS + E D+ +N+LLD E ++DFG
Sbjct: 112 DLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFG 171
Query: 543 IAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
++K + GT Y+AP+ + + D +SF VL E++ G P
Sbjct: 172 LSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLP 225
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 55/234 (23%)
Query: 389 REGQRSPQNSQ-GLLSILSFKGKFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF 447
+EG SQ LL +L +G F V +++ I+ DA+ +Y ++ K
Sbjct: 16 KEGHEKADPSQFELLKVLG-QGSFGKVFLVKKISGSDAR---------QLYAMKVLKKAT 65
Query: 448 LAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKF-YGFCSHARHSILIYEYLKRG 506
L V+ D++ + E + L ++ H IVK Y F + + LI ++L+ G
Sbjct: 66 LKVR--------DRVRTK----MERDILVEVNHPFIVKLHYAFQTEGK-LYLILDFLRGG 112
Query: 507 SLATNLSNDAAAEELDIS------------------------SKNVLLDLEHKAHVSDFG 542
L T LS + E D+ +N+LLD E ++DFG
Sbjct: 113 DLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFG 172
Query: 543 IAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
++K + GT Y+AP+ + + D +SF VL E++ G P
Sbjct: 173 LSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLP 226
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 109/255 (42%), Gaps = 48/255 (18%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G V++ + +++ +A+K + D+I D ++ EI L++ + K+Y
Sbjct: 15 IGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQ---EITVLSQCDSPYVTKYY 71
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------DI 523
G +I EYL GS A +L +E DI
Sbjct: 72 GSYLKDTKLWIIMEYLGGGS-ALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDI 130
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSF 577
+ NVLL + ++DFG+A L + VGT ++AP+ Y K D++S
Sbjct: 131 KAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSL 190
Query: 578 RVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS-IMEVAFS 636
+ A+E+ +G+ P S + P + L P+ PP+ ++G + E +
Sbjct: 191 GITAIELARGEPPH---SELHPMKVL-------FLIPKNNPPT--LEGNYSKPLKEFVEA 238
Query: 637 CLDVSPESRPTMQTI 651
CL+ P RPT + +
Sbjct: 239 CLNKEPSFRPTAKEL 253
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 103/255 (40%), Gaps = 55/255 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V+ +AVK S F AE + +++H+ +V+ Y
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA-----FLAEANLMKQLQHQRLVRLYA 75
Query: 489 FCSHARHSILIYEYLKRGSLATNLSN------------DAAAE--------------ELD 522
+ I I EY++ GSL L D AA+ D
Sbjct: 76 VVTQEPIYI-ITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 134
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCD 573
+ + N+L+ ++DFG+A+ ++ + +A G ++ AP+ + K D
Sbjct: 135 LRAANILVSDTLSCKIADFGLARLIEDNEX--TAREGAKFPIKWTAPEAINYGTFTIKSD 192
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD-VQGKLISIME 632
V+SF +L E++ H R +P P + N + + L+ PD +L +M
Sbjct: 193 VWSFGILLTEIV--THGR------IPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMR 244
Query: 633 VAFSCLDVSPESRPT 647
+ C PE RPT
Sbjct: 245 L---CWKERPEDRPT 256
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 119/301 (39%), Gaps = 82/301 (27%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE--IEALTKIRHRNIVKF 486
IG GR+G+VY+ L + +AVK F+ A+++ F E I + + H NI +F
Sbjct: 21 IGRGRYGAVYKGSLDERP-VAVKVFS-------FANRQNFINEKNIYRVPLMEHDNIARF 72
Query: 487 Y----GFCSHARHS-ILIYEYLKRGSLATNLS---------------------------- 513
+ R +L+ EY GSL LS
Sbjct: 73 IVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELP 132
Query: 514 ----NDAAAEELDISSKNVLLDLEHKAHVSDFGIA------KFLKPDSSNWSAL--VGTY 561
A D++S+NVL+ + +SDFG++ + ++P + +A+ VGT
Sbjct: 133 RGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTI 192
Query: 562 RYVAPDY-------------RKKCDVYSFRVLALEVIKG-----------KHPRGFVSSI 597
RY+AP+ K+ D+Y+ ++ E+ ++ F + +
Sbjct: 193 RYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEV 252
Query: 598 LPSPSVINMRL---DEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQ 654
P+ +M++ E P+ P + + S+ E C D E+R T Q ++
Sbjct: 253 GNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEER 312
Query: 655 L 655
+
Sbjct: 313 M 313
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 103/255 (40%), Gaps = 55/255 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V+ +AVK S F AE + +++H+ +V+ Y
Sbjct: 22 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA-----FLAEANLMKQLQHQRLVRLYA 76
Query: 489 FCSHARHSILIYEYLKRGSLATNLSN------------DAAAE--------------ELD 522
+ I I EY++ GSL L D AA+ D
Sbjct: 77 VVTQEPIYI-ITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 135
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCD 573
+ + N+L+ ++DFG+A+ ++ + +A G ++ AP+ + K D
Sbjct: 136 LRAANILVSDTLSCKIADFGLARLIEDNEX--TAREGAKFPIKWTAPEAINYGTFTIKSD 193
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD-VQGKLISIME 632
V+SF +L E++ H R +P P + N + + L+ PD +L +M
Sbjct: 194 VWSFGILLTEIV--THGR------IPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMR 245
Query: 633 VAFSCLDVSPESRPT 647
+ C PE RPT
Sbjct: 246 L---CWKERPEDRPT 257
>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836
Length = 273
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 36/169 (21%)
Query: 463 ADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-- 520
A + E AE + ++ + IV+ G C A +L+ E + G L L + ++
Sbjct: 48 ALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAELGPLNKYLQQNRHVKDKN 106
Query: 521 ----------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV 558
D++++NVLL +H A +SDFG++K L+ D + + A
Sbjct: 107 IIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT 166
Query: 559 -GTY--RYVAPD------YRKKCDVYSFRVLALEVIK-GKHP-RGFVSS 596
G + ++ AP+ + K DV+SF VL E G+ P RG S
Sbjct: 167 HGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS 215
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 109/255 (42%), Gaps = 48/255 (18%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G V++ + +++ +A+K + D+I D ++ EI L++ + K+Y
Sbjct: 15 IGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQ---EITVLSQCDSPYVTKYY 71
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------DI 523
G +I EYL GS A +L +E DI
Sbjct: 72 GSYLKDTKLWIIMEYLGGGS-ALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDI 130
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSF 577
+ NVLL + ++DFG+A L + VGT ++AP+ Y K D++S
Sbjct: 131 KAANVLLSEHGEVKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDSKADIWSL 190
Query: 578 RVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS-IMEVAFS 636
+ A+E+ +G+ P S + P + L P+ PP+ ++G + E +
Sbjct: 191 GITAIELARGEPPH---SELHPMKVL-------FLIPKNNPPT--LEGNYSKPLKEFVEA 238
Query: 637 CLDVSPESRPTMQTI 651
CL+ P RPT + +
Sbjct: 239 CLNKEPSFRPTAKEL 253
>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In
Complex With A Diaminopyrimidine Carboxamide Inhibitor
Length = 277
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 36/169 (21%)
Query: 463 ADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-- 520
A + E AE + ++ + IV+ G C A +L+ E + G L L + ++
Sbjct: 54 ALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAELGPLNKYLQQNRHVKDKN 112
Query: 521 ----------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV 558
D++++NVLL +H A +SDFG++K L+ D + + A
Sbjct: 113 IIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT 172
Query: 559 -GTY--RYVAPD------YRKKCDVYSFRVLALEVIK-GKHP-RGFVSS 596
G + ++ AP+ + K DV+SF VL E G+ P RG S
Sbjct: 173 HGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS 221
>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain
pdb|1XBB|A Chain A, Crystal Structure Of The Syk Tyrosine Kinase Domain With
Gleevec
pdb|1XBC|A Chain A, Crystal Structure Of The Syk Tyrosine Kinase Domain With
Staurosporin
pdb|3FQE|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
Ym193306
pdb|3FQH|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
A 2-Substituted 7-Azaindole
pdb|3FQH|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
A 2-Substituted 7-Azaindole
pdb|3FQS|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
R406
pdb|4FL1|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
pdb|4FYN|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
3-(8-{4-
[ethyl-(2-hydroxy-ethyl)-amino]-phenylamino}-imidazo[1,
2-a]pyrazin-5- Yl)-phenol
pdb|4FYO|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
N-{(s)-1-
[7-(3,4-dimethoxy-phenylamino)-thiazolo[5,
4-d]pyrimidin-5-yl]- Pyrrolidin-3-yl}-terephthalamic
Acid
pdb|4FZ6|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
[6-((s)-2-
Methyl-pyrrolidin-1-yl)-pyridin-2-yl]-(6-phenyl-
imidazo[1,2- B]pyridazin-8-yl)-amine
Length = 291
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 36/169 (21%)
Query: 463 ADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-- 520
A + E AE + ++ + IV+ G C A +L+ E + G L L + ++
Sbjct: 60 ALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAELGPLNKYLQQNRHVKDKN 118
Query: 521 ----------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV 558
D++++NVLL +H A +SDFG++K L+ D + + A
Sbjct: 119 IIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT 178
Query: 559 -GTY--RYVAPD------YRKKCDVYSFRVLALEVIK-GKHP-RGFVSS 596
G + ++ AP+ + K DV+SF VL E G+ P RG S
Sbjct: 179 HGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS 227
>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
A Sulfonamidopyrazine Piperidine Inhibitor
pdb|4DFN|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
An Adamantylpyrazine Inhibitor
Length = 274
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 36/169 (21%)
Query: 463 ADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-- 520
A + E AE + ++ + IV+ G C A +L+ E + G L L + ++
Sbjct: 50 ALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAELGPLNKYLQQNRHVKDKN 108
Query: 521 ----------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV 558
D++++NVLL +H A +SDFG++K L+ D + + A
Sbjct: 109 IIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT 168
Query: 559 -GTY--RYVAPD------YRKKCDVYSFRVLALEVIK-GKHP-RGFVSS 596
G + ++ AP+ + K DV+SF VL E G+ P RG S
Sbjct: 169 HGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS 217
>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2-
Phenylaminopyrimidines As Potent Inhibitors Of Spleen
Tyrosine Kinase (Syk)
Length = 291
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 36/169 (21%)
Query: 463 ADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-- 520
A + E AE + ++ + IV+ G C A +L+ E + G L L + ++
Sbjct: 68 ALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAELGPLNKYLQQNRHVKDKN 126
Query: 521 ----------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV 558
D++++NVLL +H A +SDFG++K L+ D + + A
Sbjct: 127 IIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT 186
Query: 559 -GTY--RYVAPD------YRKKCDVYSFRVLALEVIK-GKHP-RGFVSS 596
G + ++ AP+ + K DV+SF VL E G+ P RG S
Sbjct: 187 HGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS 235
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 103/255 (40%), Gaps = 55/255 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V+ +AVK S F AE + +++H+ +V+ Y
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA-----FLAEANLMKQLQHQRLVRLYA 75
Query: 489 FCSHARHSILIYEYLKRGSLATNLSN------------DAAAE--------------ELD 522
+ I I EY++ GSL L D AA+ D
Sbjct: 76 VVTQEPIYI-ITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 134
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCD 573
+ + N+L+ ++DFG+A+ ++ + +A G ++ AP+ + K D
Sbjct: 135 LRAANILVSDTLSCKIADFGLARLIEDNEX--TAREGAKFPIKWTAPEAINYGTFTIKSD 192
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD-VQGKLISIME 632
V+SF +L E++ H R +P P + N + + L+ PD +L +M
Sbjct: 193 VWSFGILLTEIV--THGR------IPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMR 244
Query: 633 VAFSCLDVSPESRPT 647
+ C PE RPT
Sbjct: 245 L---CWKERPEDRPT 256
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 103/255 (40%), Gaps = 55/255 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V+ +AVK S F AE + +++H+ +V+ Y
Sbjct: 23 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA-----FLAEANLMKQLQHQRLVRLYA 77
Query: 489 FCSHARHSILIYEYLKRGSLATNLSN------------DAAAE--------------ELD 522
+ I I EY++ GSL L D AA+ D
Sbjct: 78 VVTQEPIYI-ITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 136
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCD 573
+ + N+L+ ++DFG+A+ ++ + +A G ++ AP+ + K D
Sbjct: 137 LRAANILVSDTLSCKIADFGLARLIEDNEX--TAREGAKFPIKWTAPEAINYGTFTIKSD 194
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD-VQGKLISIME 632
V+SF +L E++ H R +P P + N + + L+ PD +L +M
Sbjct: 195 VWSFGILLTEIV--THGR------IPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMR 246
Query: 633 VAFSCLDVSPESRPT 647
+ C PE RPT
Sbjct: 247 L---CWKERPEDRPT 258
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 109/255 (42%), Gaps = 48/255 (18%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G V++ + +++ +A+K + D+I D ++ EI L++ + K+Y
Sbjct: 30 IGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQ---EITVLSQCDSPYVTKYY 86
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------DI 523
G +I EYL GS A +L +E DI
Sbjct: 87 GSYLKDTKLWIIMEYLGGGS-ALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDI 145
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSF 577
+ NVLL + ++DFG+A L + VGT ++AP+ Y K D++S
Sbjct: 146 KAANVLLSEHGEVKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDSKADIWSL 205
Query: 578 RVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS-IMEVAFS 636
+ A+E+ +G+ P S + P + L P+ PP+ ++G + E +
Sbjct: 206 GITAIELARGEPPH---SELHPMKVL-------FLIPKNNPPT--LEGNYSKPLKEFVEA 253
Query: 637 CLDVSPESRPTMQTI 651
CL+ P RPT + +
Sbjct: 254 CLNKEPSFRPTAKEL 268
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 103/255 (40%), Gaps = 55/255 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V+ +AVK S F AE + +++H+ +V+ Y
Sbjct: 29 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA-----FLAEANLMKQLQHQRLVRLYA 83
Query: 489 FCSHARHSILIYEYLKRGSLATNLSN------------DAAAE--------------ELD 522
+ I I EY++ GSL L D AA+ D
Sbjct: 84 VVTQEPIYI-ITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 142
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCD 573
+ + N+L+ ++DFG+A+ ++ + +A G ++ AP+ + K D
Sbjct: 143 LRAANILVSDTLSCKIADFGLARLIEDNEX--TAREGAKFPIKWTAPEAINYGTFTIKSD 200
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD-VQGKLISIME 632
V+SF +L E++ H R +P P + N + + L+ PD +L +M
Sbjct: 201 VWSFGILLTEIV--THGR------IPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMR 252
Query: 633 VAFSCLDVSPESRPT 647
+ C PE RPT
Sbjct: 253 L---CWKERPEDRPT 264
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 103/255 (40%), Gaps = 55/255 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V+ +AVK S F AE + +++H+ +V+ Y
Sbjct: 30 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA-----FLAEANLMKQLQHQRLVRLYA 84
Query: 489 FCSHARHSILIYEYLKRGSLATNLSN------------DAAAE--------------ELD 522
+ I I EY++ GSL L D AA+ D
Sbjct: 85 VVTQEPIYI-ITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 143
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCD 573
+ + N+L+ ++DFG+A+ ++ + +A G ++ AP+ + K D
Sbjct: 144 LRAANILVSDTLSCKIADFGLARLIEDNEX--TAREGAKFPIKWTAPEAINYGTFTIKSD 201
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD-VQGKLISIME 632
V+SF +L E++ H R +P P + N + + L+ PD +L +M
Sbjct: 202 VWSFGILLTEIV--THGR------IPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMR 253
Query: 633 VAFSCLDVSPESRPT 647
+ C PE RPT
Sbjct: 254 L---CWKERPEDRPT 265
>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7-
Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2-
Phenylcyclopropyl)urea
Length = 293
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 36/167 (21%)
Query: 465 QKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---- 520
+ E AE + ++ + IV+ G C A +L+ E + G L L + ++
Sbjct: 72 KDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAELGPLNKYLQQNRHVKDKNII 130
Query: 521 --------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV-G 559
D++++NVLL +H A +SDFG++K L+ D + + A G
Sbjct: 131 ELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHG 190
Query: 560 TY--RYVAPD------YRKKCDVYSFRVLALEVIK-GKHP-RGFVSS 596
+ ++ AP+ + K DV+SF VL E G+ P RG S
Sbjct: 191 KWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS 237
>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic
Domain With Pyrazolylbenzimidazole Inhibitor 416
pdb|3VF9|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic
Domain With Thienopyrazolylindole Inhibitor 027
pdb|3TUC|A Chain A, Crystal Structure Of Syk Kinase Domain With
1-Benzyl-N-(5-(6,7-
Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-2-Oxo-1,
2-Dihydropyridine-3- Carboxamide
pdb|3TUD|A Chain A, Crystal Structure Of Syk Kinase Domain With
N-(4-Methyl-3-(8-Methyl-7-
Oxo-2-(Phenylamino)-7,8-Dihydropyrido[2,
3-D]pyrimidin-6-Yl)phenyl)-3- (Trifluoromethyl)benzamide
Length = 299
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 36/167 (21%)
Query: 465 QKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---- 520
+ E AE + ++ + IV+ G C A +L+ E + G L L + ++
Sbjct: 72 KDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAELGPLNKYLQQNRHVKDKNII 130
Query: 521 --------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV-G 559
D++++NVLL +H A +SDFG++K L+ D + + A G
Sbjct: 131 ELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHG 190
Query: 560 TY--RYVAPD------YRKKCDVYSFRVLALEVIK-GKHP-RGFVSS 596
+ ++ AP+ + K DV+SF VL E G+ P RG S
Sbjct: 191 KWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS 237
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 103/255 (40%), Gaps = 55/255 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V+ +AVK S F AE + +++H+ +V+ Y
Sbjct: 27 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA-----FLAEANLMKQLQHQRLVRLYA 81
Query: 489 FCSHARHSILIYEYLKRGSLATNLSN------------DAAAE--------------ELD 522
+ I I EY++ GSL L D AA+ D
Sbjct: 82 VVTQEPIYI-ITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 140
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCD 573
+ + N+L+ ++DFG+A+ ++ + +A G ++ AP+ + K D
Sbjct: 141 LRAANILVSDTLSCKIADFGLARLIEDNEX--TAREGAKFPIKWTAPEAINYGTFTIKSD 198
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD-VQGKLISIME 632
V+SF +L E++ H R +P P + N + + L+ PD +L +M
Sbjct: 199 VWSFGILLTEIV--THGR------IPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMR 250
Query: 633 VAFSCLDVSPESRPT 647
+ C PE RPT
Sbjct: 251 L---CWKERPEDRPT 262
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 192 NLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLST 251
+LS L F++S N K + LT+L L GN L LP+EI +L+ L L+LS
Sbjct: 230 DLSNLQIFNISAN---------IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSH 279
Query: 252 NRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREI 306
NR +SL P LG+ +L Y + LP E G L L L + N L ++
Sbjct: 280 NRLTSL-PAELGSCFQLKYFYFFD-NMVTTLPWEFGNLCNLQFLGVEGNPLEKQF 332
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 151 LDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKI 210
LD+S+ F I++N K L+ L ++ N++T +P EI NLS L DLS N + +
Sbjct: 229 LDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTS-L 285
Query: 211 PKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTN 252
P E G L N ++ LP E G+L L+FL + N
Sbjct: 286 PAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGN 326
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 5 LRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLS 64
L L+L N LT L P E NL +L L L N+ SLP+ +G+ L+Y + F+N ++
Sbjct: 249 LTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306
Query: 65 GSIPPSVGNLM-LTVLALENN 84
++P GNL L L +E N
Sbjct: 307 -TLPWEFGNLCNLQFLGVEGN 326
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 104/274 (37%), Gaps = 59/274 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQK--EFFAEIEALTKIRHRNIVKF 486
+G G GSV L ++ ++K + D + ++ EF +E + H N+++
Sbjct: 42 LGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRL 101
Query: 487 YGFCSHAR-------------------HSILIYEYLKRG-------SLATNLSNDAAAEE 520
G C H+ L+Y L+ G +L + + A E
Sbjct: 102 LGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGME 161
Query: 521 L---------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAPD-- 567
D++++N +L + V+DFG++K + + +++A +
Sbjct: 162 YLSNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESL 221
Query: 568 ----YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML--DPRLPPPSP 621
Y K DV++F V E+ RG P P V N + + L RL P
Sbjct: 222 ADRVYTSKSDVWAFGVTMWEIAT----RGMT----PYPGVQNHEMYDYLLHGHRLKQP-- 271
Query: 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ L + E+ +SC P RPT + QL
Sbjct: 272 --EDCLDELYEIMYSCWRTDPLDRPTFSVLRLQL 303
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 103/255 (40%), Gaps = 55/255 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V+ +AVK S F AE + +++H+ +V+ Y
Sbjct: 21 LGAGQAGEVWMGYYNGHTKVAVKSLKQGSMSPDA-----FLAEANLMKQLQHQRLVRLYA 75
Query: 489 FCSHARHSILIYEYLKRGSLATNLSN------------DAAAE--------------ELD 522
+ I I EY++ GSL L D AA+ D
Sbjct: 76 VVTQEPIYI-ITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 134
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCD 573
+ + N+L+ ++DFG+A+ + + + +A G ++ AP+ + K D
Sbjct: 135 LRAANILVSDTLSCKIADFGLARLI--EDAEXTAREGAKFPIKWTAPEAINYGTFTIKSD 192
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD-VQGKLISIME 632
V+SF +L E++ H R +P P + N + + L+ PD +L +M
Sbjct: 193 VWSFGILLTEIV--THGR------IPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMR 244
Query: 633 VAFSCLDVSPESRPT 647
+ C PE RPT
Sbjct: 245 L---CWKERPEDRPT 256
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 108/276 (39%), Gaps = 62/276 (22%)
Query: 429 IGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G GSV + E +AVKK L ++F EIE L ++H NI
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKK----LQHSTEEHLRDFEREIEILKSLQHDNI 76
Query: 484 VKFYGFCSHA--RHSILIYEYLKRGSLATNLSND-----------------AAAEEL--- 521
VK+ G C A R+ LI E+L GSL L E L
Sbjct: 77 VKYKGVCYSAGRRNLKLIMEFLPYGSLREYLQKHKERIDHIKLLQYTSQICKGMEYLGTK 136
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD------ 567
D++++N+L++ E++ + DFG+ K L D + AP+
Sbjct: 137 RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESK 196
Query: 568 YRKKCDVYSFRVLALEVI----KGKHPRGFVSSIL---PSPSVINMRLDEML--DPRLPP 618
+ DV+SF V+ E+ K K P ++ +I L E+L + RLP
Sbjct: 197 FSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPR 256
Query: 619 PS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTIT 652
P PD I + C + + RP+ + +
Sbjct: 257 PDGCPD------EIYMIMTECWNNNVNQRPSFRDLA 286
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 65/128 (50%), Gaps = 7/128 (5%)
Query: 185 SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI-GSLTK 243
S+P I +T DL N + F +L SLT+L L GN+L LP+ + LT
Sbjct: 21 SVPTGIPAQTTY--LDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTS 77
Query: 244 LEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL-GKLVQLSELELSHNFL 302
L +LNLSTN+ SL L +L L L+ Q +Q LP + KL QL +L L N L
Sbjct: 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQL 136
Query: 303 GREIPSQI 310
+ +P +
Sbjct: 137 -KSVPDGV 143
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 73/186 (39%), Gaps = 34/186 (18%)
Query: 121 CPNLVRISLEGNNM----RGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLN 176
CP+ R S G + +G S GI T+LD+ N+
Sbjct: 1 CPS--RCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSL------------------ 40
Query: 177 VSMNNITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLP 235
+S+P + L++L + L N + F KL SLT L L NQL LP
Sbjct: 41 -------KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-QSLP 92
Query: 236 SEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSE 294
+ + LT+L+ L L+TN+ SL L +L L L + Q +L L
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152
Query: 295 LELSHN 300
+ L N
Sbjct: 153 IWLHDN 158
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFE 60
LT L+EL L N L L L L L L NQ + S+P V L+SL+Y++L +
Sbjct: 99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHD 157
Query: 61 NNLSGSIP 68
N + P
Sbjct: 158 NPWDCTCP 165
>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex
With Staurosporine
Length = 287
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 110/270 (40%), Gaps = 52/270 (19%)
Query: 430 GSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGF 489
GS R G VYR + +A+K + AD +E E + + ++ + IV+ G
Sbjct: 24 GSVRQG-VYRMRKKQID-VAIKVLKQ---GTEKADTEEMMREAQIMHQLDNPYIVRLIGV 78
Query: 490 CSHAR-------------HSILI-----------YEYLKRGSLATNLSNDAAAEELDISS 525
C H L+ E L + S+ + D+++
Sbjct: 79 CQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAA 138
Query: 526 KNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL-VGTY--RYVAPD---YRK---KCDVYS 576
+NVLL H A +SDFG++K L D S ++A G + ++ AP+ +RK + DV+S
Sbjct: 139 RNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWS 198
Query: 577 FRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAF 635
+ V E + G+ P + P V+ +++ PP P L+S
Sbjct: 199 YGVTMWEALSYGQKP----YKKMKGPEVMAF-IEQGKRMECPPECPPELYALMS------ 247
Query: 636 SCLDVSPESRPTMQTITQQLLFSLVYFSYA 665
C E RP T+ Q++ Y+S A
Sbjct: 248 DCWIYKWEDRPDFLTVEQRM--RACYYSLA 275
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 125/301 (41%), Gaps = 42/301 (13%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
LTNL L+L N +T + P NL L L +G N+ S++ NL++LR L+L E+
Sbjct: 65 LTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNED 120
Query: 62 NLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNC 121
N+S I P L L NH +L + L + V + + P + N
Sbjct: 121 NIS-DISPLANLTKXYSLNLGANHNLSDLSP-LSNXTGLNYLTVTESKVKDVTP--IANL 176
Query: 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNN 181
+L +SL N + DIS L +N
Sbjct: 177 TDLYSLSLNYNQIE----------------DISP----------LASLTSLHYFTAYVNQ 210
Query: 182 ITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSL 241
IT P + N + LN + N I P L+ LT L + NQ+ + + L
Sbjct: 211 ITDITP--VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDL 264
Query: 242 TKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNF 301
TKL+ LN+ +N+ S + L NL +L+ L L+ Q E + +G L L+ L LS N
Sbjct: 265 TKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNH 322
Query: 302 L 302
+
Sbjct: 323 I 323
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 109/248 (43%), Gaps = 22/248 (8%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
NLTNLREL+L ++ ++ + P NL L LG N L S + N + L YL + E
Sbjct: 108 NLTNLRELYLNEDNISDISPLA--NLTKXYSLNLGANHNLSDL-SPLSNXTGLNYLTVTE 164
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
+ + P + NL + ++ +L +N + + + ++F + +
Sbjct: 165 SKVKDVTP--IANLT--------DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI 214
Query: 121 CP--NLVRI-SLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNV 177
P N R+ SL+ N + T LT+L+I N +I + KL LNV
Sbjct: 215 TPVANXTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ-ISDINA-VKDLTKLKXLNV 272
Query: 178 SMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSE 237
N I+ L NLS LN L+ N + + + G L +LT L L N + P
Sbjct: 273 GSNQISDISVL--NNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP-- 328
Query: 238 IGSLTKLE 245
+ SL+K +
Sbjct: 329 LASLSKXD 336
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 110/280 (39%), Gaps = 67/280 (23%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
D EI R + K +G+G+ G V+ A +AVK P + F AE
Sbjct: 175 DAWEIPRESLKLEKK--LGAGQFGEVWMATYNKHTKVAVKTMK---PGSMSVEA--FLAE 227
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE----------- 520
+ ++H +VK + + I I E++ +GSL L +D +++
Sbjct: 228 ANVMKTLQHDKLVKLHAVVTKEPIYI-ITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQ 286
Query: 521 ---------------LDISSKNVLLDLEHKAHVSDFGIA--------KFLKPDSSNWSAL 557
D+ + N+L+ ++DFG+A K+ P++ N+ +
Sbjct: 287 IAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVGAKFPIKWTAPEAINFGS- 345
Query: 558 VGTYRYVAPDYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP--R 615
+ K DV+SF +L +E++ +P P + N + L+ R
Sbjct: 346 ----------FTIKSDVWSFGILLMEIV--------TYGRIPYPGMSNPEVIRALERGYR 387
Query: 616 LPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+P P + +L +IM C PE RPT + I L
Sbjct: 388 MPRPE-NCPEELYNIM---MRCWKNRPEERPTFEYIQSVL 423
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 108/267 (40%), Gaps = 50/267 (18%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G G G VY+A+ LA K +++ D + EIE L H IVK G
Sbjct: 19 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELED---YIVEIEILATCDHPYIVKLLG 75
Query: 489 FCSHARHSILIYEYLKRGSL-ATNLSNDAAAEE------------------------LDI 523
H ++ E+ G++ A L D E D+
Sbjct: 76 AYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDL 135
Query: 524 SSKNVLLDLEHKAHVSDFGI-AKFLKPDSSNWSALVGTYRYVAPD-----------YRKK 571
+ NVL+ LE ++DFG+ AK LK + +GT ++AP+ Y K
Sbjct: 136 KAGNVLMTLEGDIRLADFGVSAKNLKTLQKR-DSFIGTPYWMAPEVVMCETMKDTPYDYK 194
Query: 572 CDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIM 631
D++S + +E+ + + P + +P + +++ + P L PS + +
Sbjct: 195 ADIWSLGITLIEMAQIEPPHHEL-----NPMRVLLKIAKSDPPTLLTPS-KWSVEFRDFL 248
Query: 632 EVAFSCLDVSPESRPTMQTITQQLLFS 658
++A LD +PE+RP+ + + S
Sbjct: 249 KIA---LDKNPETRPSAAQLLEHPFVS 272
>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B
Akt By Hydrophobic Motif Phosphorylation
pdb|1GZO|A Chain A, Structure Of Protein Kinase B Unphosphorylated
Length = 315
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 38/206 (18%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSP--LPSDQIADQKEFFAEIEAL 475
+NDFD +G G G V E + + A+K + D++A E L
Sbjct: 3 TMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHT---VTESRVL 59
Query: 476 TKIRHRNIVKF-YGFCSHARHSILIYEYLKRGSLATNLSND----------------AAA 518
RH + Y F +H R ++ EY G L +LS + +A
Sbjct: 60 QNTRHPFLTALKYAFQTHDRLCFVM-EYANGGELFFHLSRERVFTEERARFYGAEIVSAL 118
Query: 519 EEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP---- 566
E L DI +N++LD + ++DFG+ K D + GT Y+AP
Sbjct: 119 EYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLE 178
Query: 567 --DYRKKCDVYSFRVLALEVIKGKHP 590
DY + D + V+ E++ G+ P
Sbjct: 179 DNDYGRAVDWWGLGVVMYEMMCGRLP 204
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 23/184 (12%)
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLD 531
+E + + R+IV G + R E + A N S+ D+ N+L+
Sbjct: 95 MEYVDGVTLRDIVHTEGPMTPKR----AIEVIADACQALNFSHQNGIIHRDVKPANILIS 150
Query: 532 LEHKAHVSDFGIAKFLKPDSSN----WSALVGTYRYVAPDYRK------KCDVYSFRVLA 581
+ V DFGIA+ + DS N +A++GT +Y++P+ + + DVYS +
Sbjct: 151 ATNAVKVVDFGIARAIA-DSGNSVXQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVL 209
Query: 582 LEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVS 641
EV+ G+ P F S + ++R D + PPS +G + V L +
Sbjct: 210 YEVLTGEPP--FTGDSPVSVAYQHVREDPI------PPSARHEGLSADLDAVVLKALAKN 261
Query: 642 PESR 645
PE+R
Sbjct: 262 PENR 265
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 23/184 (12%)
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLD 531
+E + + R+IV G + R E + A N S+ D+ N+++
Sbjct: 95 MEYVDGVTLRDIVHTEGPMTPKR----AIEVIADACQALNFSHQNGIIHRDVKPANIMIS 150
Query: 532 LEHKAHVSDFGIAKFLKPDSSN----WSALVGTYRYVAPDYRK------KCDVYSFRVLA 581
+ V DFGIA+ + DS N +A++GT +Y++P+ + + DVYS +
Sbjct: 151 ATNAVKVMDFGIARAIA-DSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVL 209
Query: 582 LEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVS 641
EV+ G+ P F S + ++R D + PPS +G + V L +
Sbjct: 210 YEVLTGEPP--FTGDSPDSVAYQHVREDPI------PPSARHEGLSADLDAVVLKALAKN 261
Query: 642 PESR 645
PE+R
Sbjct: 262 PENR 265
>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain
Length = 335
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 38/206 (18%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSP--LPSDQIADQKEFFAEIEAL 475
+NDFD +G G G V E + + A+K + D++A E L
Sbjct: 3 TMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHT---VTESRVL 59
Query: 476 TKIRHRNIVKF-YGFCSHARHSILIYEYLKRGSLATNLSND----------------AAA 518
RH + Y F +H R ++ EY G L +LS + +A
Sbjct: 60 QNTRHPFLTALKYAFQTHDRLCFVM-EYANGGELFFHLSRERVFTEERARFYGAEIVSAL 118
Query: 519 EEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP---- 566
E L DI +N++LD + ++DFG+ K D + GT Y+AP
Sbjct: 119 EYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLE 178
Query: 567 --DYRKKCDVYSFRVLALEVIKGKHP 590
DY + D + V+ E++ G+ P
Sbjct: 179 DNDYGRAVDWWGLGVVMYEMMCGRLP 204
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 23/184 (12%)
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLD 531
+E + + R+IV G + R E + A N S+ D+ N+++
Sbjct: 95 MEYVDGVTLRDIVHTEGPMTPKR----AIEVIADACQALNFSHQNGIIHRDVKPANIMIS 150
Query: 532 LEHKAHVSDFGIAKFLKPDSSN----WSALVGTYRYVAPDYRK------KCDVYSFRVLA 581
+ V DFGIA+ + DS N +A++GT +Y++P+ + + DVYS +
Sbjct: 151 ATNAVKVMDFGIARAIA-DSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVL 209
Query: 582 LEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVS 641
EV+ G+ P F S + ++R D + PPS +G + V L +
Sbjct: 210 YEVLTGEPP--FTGDSPVSVAYQHVREDPI------PPSARHEGLSADLDAVVLKALAKN 261
Query: 642 PESR 645
PE+R
Sbjct: 262 PENR 265
>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain
pdb|1MRY|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain
Length = 339
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 38/206 (18%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSP--LPSDQIADQKEFFAEIEAL 475
+NDFD +G G G V E + + A+K + D++A E L
Sbjct: 6 TMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHT---VTESRVL 62
Query: 476 TKIRHRNIVKF-YGFCSHARHSILIYEYLKRGSLATNLSND----------------AAA 518
RH + Y F +H R ++ EY G L +LS + +A
Sbjct: 63 QNTRHPFLTALKYAFQTHDRLCFVM-EYANGGELFFHLSRERVFTEERARFYGAEIVSAL 121
Query: 519 EEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP---- 566
E L DI +N++LD + ++DFG+ K D + GT Y+AP
Sbjct: 122 EYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLE 181
Query: 567 --DYRKKCDVYSFRVLALEVIKGKHP 590
DY + D + V+ E++ G+ P
Sbjct: 182 DNDYGRAVDWWGLGVVMYEMMCGRLP 207
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 108/267 (40%), Gaps = 50/267 (18%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G G G VY+A+ LA K +++ D + EIE L H IVK G
Sbjct: 27 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELED---YIVEIEILATCDHPYIVKLLG 83
Query: 489 FCSHARHSILIYEYLKRGSL-ATNLSNDAAAEE------------------------LDI 523
H ++ E+ G++ A L D E D+
Sbjct: 84 AYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDL 143
Query: 524 SSKNVLLDLEHKAHVSDFGI-AKFLKPDSSNWSALVGTYRYVAPD-----------YRKK 571
+ NVL+ LE ++DFG+ AK LK + +GT ++AP+ Y K
Sbjct: 144 KAGNVLMTLEGDIRLADFGVSAKNLKTLQKR-DSFIGTPYWMAPEVVMCETMKDTPYDYK 202
Query: 572 CDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIM 631
D++S + +E+ + + P + +P + +++ + P L PS + +
Sbjct: 203 ADIWSLGITLIEMAQIEPPHHEL-----NPMRVLLKIAKSDPPTLLTPS-KWSVEFRDFL 256
Query: 632 EVAFSCLDVSPESRPTMQTITQQLLFS 658
++A LD +PE+RP+ + + S
Sbjct: 257 KIA---LDKNPETRPSAAQLLEHPFVS 280
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 23/184 (12%)
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLD 531
+E + + R+IV G + R E + A N S+ D+ N+++
Sbjct: 112 MEYVDGVTLRDIVHTEGPMTPKR----AIEVIADACQALNFSHQNGIIHRDVKPANIMIS 167
Query: 532 LEHKAHVSDFGIAKFLKPDSSN----WSALVGTYRYVAPDYRK------KCDVYSFRVLA 581
+ V DFGIA+ + DS N +A++GT +Y++P+ + + DVYS +
Sbjct: 168 ATNAVKVMDFGIARAIA-DSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVL 226
Query: 582 LEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVS 641
EV+ G+ P F S + ++R D + PPS +G + V L +
Sbjct: 227 YEVLTGEPP--FTGDSPVSVAYQHVREDPI------PPSARHEGLSADLDAVVLKALAKN 278
Query: 642 PESR 645
PE+R
Sbjct: 279 PENR 282
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 33/194 (17%)
Query: 429 IGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+G G +VY AE +A+K P P ++ K F E+ +++ H+NIV
Sbjct: 19 LGGGGMSTVYLAEDTILNIKVAIKAIFIP-PREKEETLKRFEREVHNSSQLSHQNIVSMI 77
Query: 488 GFCSHARHSILIYEYLKRGSL--------------ATNLSN----------DAAAEELDI 523
L+ EY++ +L A N +N D DI
Sbjct: 78 DVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMRIVHRDI 137
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDS-SNWSALVGTYRYVAPDYRK-----KC-DVYS 576
+N+L+D + DFGIAK L S + + ++GT +Y +P+ K +C D+YS
Sbjct: 138 KPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYS 197
Query: 577 FRVLALEVIKGKHP 590
++ E++ G+ P
Sbjct: 198 IGIVLYEMLVGEPP 211
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 23/184 (12%)
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLD 531
+E + + R+IV G + R E + A N S+ D+ N+++
Sbjct: 95 MEYVDGVTLRDIVHTEGPMTPKR----AIEVIADACQALNFSHQNGIIHRDVKPANIMIS 150
Query: 532 LEHKAHVSDFGIAKFLKPDSSN----WSALVGTYRYVAPDYRK------KCDVYSFRVLA 581
+ V DFGIA+ + DS N +A++GT +Y++P+ + + DVYS +
Sbjct: 151 ATNAVKVMDFGIARAIA-DSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVL 209
Query: 582 LEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVS 641
EV+ G+ P F S + ++R D + PPS +G + V L +
Sbjct: 210 YEVLTGEPP--FTGDSPVSVAYQHVREDPI------PPSARHEGLSADLDAVVLKALAKN 261
Query: 642 PESR 645
PE+R
Sbjct: 262 PENR 265
>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3Q4T|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3SOC|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|3SOC|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|4ASX|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
pdb|4ASX|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
Length = 322
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 49/177 (27%)
Query: 432 GRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCS 491
GR G V++A+L + E++AVK F P+ D+ + Q E+ E+ +L ++H NI++F G +
Sbjct: 35 GRFGCVWKAQLLN-EYVAVKIF--PI-QDKQSWQNEY--EVYSLPGMKHENILQFIG--A 86
Query: 492 HARHS------ILIYEYLKRGSLATNL-SNDAAAEEL----------------------- 521
R + LI + ++GSL+ L +N + EL
Sbjct: 87 EKRGTSVDVDLWLITAFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKD 146
Query: 522 ---------DISSKNVLLDLEHKAHVSDFGIA-KFLKPDSS-NWSALVGTYRYVAPD 567
DI SKNVLL A ++DFG+A KF S+ + VGT RY+AP+
Sbjct: 147 GHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPE 203
>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-1,2,2-trimethyl-propyl)-amide
pdb|4HVG|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-2-hydroxy-1,2-dimethyl-propyl)- Amide
pdb|4HVH|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-2-hydroxy-1,2-dimethyl-propyl
pdb|4HVI|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-1-methyl-2-oxo-2-piperidin-1-yl- Ethyl)-amide
Length = 314
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 104/253 (41%), Gaps = 52/253 (20%)
Query: 447 FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFC-SHARHSI-LIYEYLK 504
+AVK+ P DQ Q++F EI+ L + IVK+ G R S+ L+ EYL
Sbjct: 41 LVAVKQLQHSGP-DQ---QRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLP 96
Query: 505 RGSLATNLSNDAA---AEEL----------------------DISSKNVLLDLEHKAHVS 539
G L L A A L D++++N+L++ E ++
Sbjct: 97 SGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIA 156
Query: 540 DFGIAKFLKPDSSNWSALVGTYR---YVAPD------YRKKCDVYSFRVLALEVI----K 586
DFG+AK L D + + AP+ + ++ DV+SF V+ E+ K
Sbjct: 157 DFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDK 216
Query: 587 GKHPRGFVSSILPS----PSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSP 642
P ++ S P++ + RLP P P ++ +M++ C SP
Sbjct: 217 SCSPSAEFLRMMGSERDVPALSRLLELLEEGQRLPAP-PACPAEVHELMKL---CWAPSP 272
Query: 643 ESRPTMQTITQQL 655
+ RP+ + QL
Sbjct: 273 QDRPSFSALGPQL 285
>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDR|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With The Inhibitor
A- 443654
pdb|2UW9|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|2X39|A Chain A, Structure Of
4-Amino-N-(4-Chlorobenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidine-4-Carboxamide Bound To Pkb
pdb|2XH5|A Chain A, Structure Of 4-(4-Tert-Butylbenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidin-4-Amine Bound To Pkb
Length = 342
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 38/206 (18%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSP--LPSDQIADQKEFFAEIEAL 475
+NDFD +G G G V E + + A+K + D++A E L
Sbjct: 8 TMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHT---VTESRVL 64
Query: 476 TKIRHRNIVKF-YGFCSHARHSILIYEYLKRGSLATNLSND----------------AAA 518
RH + Y F +H R ++ EY G L +LS + +A
Sbjct: 65 QNTRHPFLTALKYAFQTHDRLCFVM-EYANGGELFFHLSRERVFTEERARFYGAEIVSAL 123
Query: 519 EEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP---- 566
E L DI +N++LD + ++DFG+ K D + GT Y+AP
Sbjct: 124 EYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKXFCGTPEYLAPEVLE 183
Query: 567 --DYRKKCDVYSFRVLALEVIKGKHP 590
DY + D + V+ E++ G+ P
Sbjct: 184 DNDYGRAVDWWGLGVVMYEMMCGRLP 209
>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E87|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E88|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E88|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E8D|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E8D|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3D0E|A Chain A, Crystal Structure Of Human Akt2 In Complex With Gsk690693
pdb|3D0E|B Chain B, Crystal Structure Of Human Akt2 In Complex With Gsk690693
Length = 335
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 38/206 (18%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSP--LPSDQIADQKEFFAEIEAL 475
+NDFD +G G G V E + + A+K + D++A E L
Sbjct: 3 TMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHT---VTESRVL 59
Query: 476 TKIRHRNIVKF-YGFCSHARHSILIYEYLKRGSLATNLSND----------------AAA 518
RH + Y F +H R ++ EY G L +LS + +A
Sbjct: 60 QNTRHPFLTALKYAFQTHDRLCFVM-EYANGGELFFHLSRERVFTEERARFYGAEIVSAL 118
Query: 519 EEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP---- 566
E L DI +N++LD + ++DFG+ K D + GT Y+AP
Sbjct: 119 EYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKXFCGTPEYLAPEVLE 178
Query: 567 --DYRKKCDVYSFRVLALEVIKGKHP 590
DY + D + V+ E++ G+ P
Sbjct: 179 DNDYGRAVDWWGLGVVMYEMMCGRLP 204
>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B
(pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3
Peptide
Length = 337
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 38/206 (18%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSP--LPSDQIADQKEFFAEIEAL 475
+NDFD +G G G V E + + A+K + D++A E L
Sbjct: 3 TMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHT---VTESRVL 59
Query: 476 TKIRHRNIVKF-YGFCSHARHSILIYEYLKRGSLATNLSND----------------AAA 518
RH + Y F +H R ++ EY G L +LS + +A
Sbjct: 60 QNTRHPFLTALKYAFQTHDRLCFVM-EYANGGELFFHLSRERVFTEERARFYGAEIVSAL 118
Query: 519 EEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP---- 566
E L DI +N++LD + ++DFG+ K D + GT Y+AP
Sbjct: 119 EYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKXFCGTPEYLAPEVLE 178
Query: 567 --DYRKKCDVYSFRVLALEVIKGKHP 590
DY + D + V+ E++ G+ P
Sbjct: 179 DNDYGRAVDWWGLGVVMYEMMCGRLP 204
>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d
With Gsk3 Peptide And Amp-Pnp
Length = 336
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 38/206 (18%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSP--LPSDQIADQKEFFAEIEAL 475
+NDFD +G G G V E + + A+K + D++A E L
Sbjct: 3 TMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHT---VTESRVL 59
Query: 476 TKIRHRNIVKF-YGFCSHARHSILIYEYLKRGSLATNLSND----------------AAA 518
RH + Y F +H R ++ EY G L +LS + +A
Sbjct: 60 QNTRHPFLTALKYAFQTHDRLCFVM-EYANGGELFFHLSRERVFTEERARFYGAEIVSAL 118
Query: 519 EEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP---- 566
E L DI +N++LD + ++DFG+ K D + GT Y+AP
Sbjct: 119 EYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKXFCGTPEYLAPEVLE 178
Query: 567 --DYRKKCDVYSFRVLALEVIKGKHP 590
DY + D + V+ E++ G+ P
Sbjct: 179 DNDYGRAVDWWGLGVVMYEMMCGRLP 204
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 23/184 (12%)
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLD 531
+E + + R+IV G + R E + A N S+ D+ N+++
Sbjct: 95 MEYVDGVTLRDIVHTEGPMTPKR----AIEVIADACQALNFSHQNGIIHRDVKPANIMIS 150
Query: 532 LEHKAHVSDFGIAKFLKPDSSN----WSALVGTYRYVAPDYRK------KCDVYSFRVLA 581
+ V DFGIA+ + DS N +A++GT +Y++P+ + + DVYS +
Sbjct: 151 ATNAVKVMDFGIARAIA-DSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVL 209
Query: 582 LEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVS 641
EV+ G+ P F S + ++R D + PPS +G + V L +
Sbjct: 210 YEVLTGEPP--FTGDSPVSVAYQHVREDPI------PPSARHEGLSADLDAVVLKALAKN 261
Query: 642 PESR 645
PE+R
Sbjct: 262 PENR 265
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 103/259 (39%), Gaps = 62/259 (23%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V+ + +AVK S Q F E + ++H +V+ Y
Sbjct: 20 LGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQA-----FLEEANLMKTLQHDKLVRLYA 74
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL--------------------------D 522
+ +I E++ +GSL L +D + L D
Sbjct: 75 VVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRD 134
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCD 573
+ + NVL+ ++DFG+A+ + + + ++A G ++ AP+ + K +
Sbjct: 135 LRAANVLVSESLMCKIADFGLARVI--EDNEYTAREGAKFPIKWTAPEAINFGCFTIKSN 192
Query: 574 VYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS--PDVQGKLI 628
V+SF +L E++ GK +P P N + L R+P PD +L
Sbjct: 193 VWSFGILLYEIVTYGK---------IPYPGRTNADVMSALSQGYRMPRMENCPD---ELY 240
Query: 629 SIMEVAFSCLDVSPESRPT 647
IM++ C E RPT
Sbjct: 241 DIMKM---CWKEKAEERPT 256
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 106/269 (39%), Gaps = 57/269 (21%)
Query: 429 IGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G VY L K AVK N I + +F E + H N++
Sbjct: 30 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR---ITDIGEVSQFLTEGIIMKDFSHPNVL 86
Query: 485 KFYGFCSHARHS-ILIYEYLKRGSLATNLSNDA----------------------AAEEL 521
G C + S +++ Y+K G L + N+ A+++
Sbjct: 87 SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKF 146
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT-----YRYVAPD------ 567
D++++N +LD + V+DFG+A+ + D +S T +++A +
Sbjct: 147 VHRDLAARNCMLDEKFTVKVADFGLARDMY-DKEYYSVHNKTGAKLPVKWMALESLQTQK 205
Query: 568 YRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626
+ K DV+SF VL E++ +G P V++ + ++ R +L P P
Sbjct: 206 FTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR--RLLQPEYCPD------- 256
Query: 627 LISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ EV C E RP+ + ++
Sbjct: 257 --PLYEVMLKCWHPKAEMRPSFSELVSRI 283
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 106/269 (39%), Gaps = 57/269 (21%)
Query: 429 IGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G VY L K AVK N I + +F E + H N++
Sbjct: 38 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR---ITDIGEVSQFLTEGIIMKDFSHPNVL 94
Query: 485 KFYGFCSHARHS-ILIYEYLKRGSLATNLSNDA----------------------AAEEL 521
G C + S +++ Y+K G L + N+ A+++
Sbjct: 95 SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKF 154
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT-----YRYVAPD------ 567
D++++N +LD + V+DFG+A+ + D +S T +++A +
Sbjct: 155 VHRDLAARNCMLDEKFTVKVADFGLARDMY-DKEYYSVHNKTGAKLPVKWMALESLQTQK 213
Query: 568 YRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626
+ K DV+SF VL E++ +G P V++ + ++ R +L P P
Sbjct: 214 FTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR--RLLQPEYCPD------- 264
Query: 627 LISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ EV C E RP+ + ++
Sbjct: 265 --PLYEVMLKCWHPKAEMRPSFSELVSRI 291
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 104/271 (38%), Gaps = 61/271 (22%)
Query: 429 IGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G VY L K AVK N I + +F E + H N++
Sbjct: 39 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR---ITDIGEVSQFLTEGIIMKDFSHPNVL 95
Query: 485 KFYGFCSHARHS-ILIYEYLKRGSLATNLSNDA----------------------AAEEL 521
G C + S +++ Y+K G L + N+ A+++
Sbjct: 96 SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKF 155
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFL---KPDSSN----------WSALVGTYRYVA 565
D++++N +LD + V+DFG+A+ + + DS + W AL
Sbjct: 156 VHRDLAARNCMLDEKFTVKVADFGLARDMLDKEFDSVHNKTGAKLPVKWMALESLQ---T 212
Query: 566 PDYRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624
+ K DV+SF VL E++ +G P V++ + ++ R +L P P
Sbjct: 213 QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR--RLLQPEYCPD----- 265
Query: 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ EV C E RP+ + ++
Sbjct: 266 ----PLYEVMLKCWHPKAEMRPSFSELVSRI 292
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 106/269 (39%), Gaps = 57/269 (21%)
Query: 429 IGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G VY L K AVK N I + +F E + H N++
Sbjct: 57 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR---ITDIGEVSQFLTEGIIMKDFSHPNVL 113
Query: 485 KFYGFCSHARHS-ILIYEYLKRGSLATNLSNDA----------------------AAEEL 521
G C + S +++ Y+K G L + N+ A+++
Sbjct: 114 SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKF 173
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT-----YRYVAPD------ 567
D++++N +LD + V+DFG+A+ + D +S T +++A +
Sbjct: 174 VHRDLAARNCMLDEKFTVKVADFGLARDMY-DKEYYSVHNKTGAKLPVKWMALESLQTQK 232
Query: 568 YRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626
+ K DV+SF VL E++ +G P V++ + ++ R +L P P
Sbjct: 233 FTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR--RLLQPEYCPD------- 283
Query: 627 LISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ EV C E RP+ + ++
Sbjct: 284 --PLYEVMLKCWHPKAEMRPSFSELVSRI 310
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 104/271 (38%), Gaps = 61/271 (22%)
Query: 429 IGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G VY L K AVK N I + +F E + H N++
Sbjct: 39 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR---ITDIGEVSQFLTEGIIMKDFSHPNVL 95
Query: 485 KFYGFCSHARHS-ILIYEYLKRGSLATNLSNDA----------------------AAEEL 521
G C + S +++ Y+K G L + N+ A+++
Sbjct: 96 SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKF 155
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFL---KPDSSN----------WSALVGTYRYVA 565
D++++N +LD + V+DFG+A+ + + DS + W AL
Sbjct: 156 VHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ---T 212
Query: 566 PDYRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624
+ K DV+SF VL E++ +G P V++ + ++ R +L P P
Sbjct: 213 QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR--RLLQPEYCPD----- 265
Query: 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ EV C E RP+ + ++
Sbjct: 266 ----PLYEVMLKCWHPKAEMRPSFSELVSRI 292
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 106/269 (39%), Gaps = 57/269 (21%)
Query: 429 IGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G VY L K AVK N I + +F E + H N++
Sbjct: 56 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR---ITDIGEVSQFLTEGIIMKDFSHPNVL 112
Query: 485 KFYGFCSHARHS-ILIYEYLKRGSLATNLSNDA----------------------AAEEL 521
G C + S +++ Y+K G L + N+ A+++
Sbjct: 113 SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKF 172
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT-----YRYVAPD------ 567
D++++N +LD + V+DFG+A+ + D +S T +++A +
Sbjct: 173 VHRDLAARNCMLDEKFTVKVADFGLARDMY-DKEYYSVHNKTGAKLPVKWMALESLQTQK 231
Query: 568 YRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626
+ K DV+SF VL E++ +G P V++ + ++ R +L P P
Sbjct: 232 FTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR--RLLQPEYCPD------- 282
Query: 627 LISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ EV C E RP+ + ++
Sbjct: 283 --PLYEVMLKCWHPKAEMRPSFSELVSRI 309
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 104/271 (38%), Gaps = 61/271 (22%)
Query: 429 IGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G VY L K AVK N I + +F E + H N++
Sbjct: 43 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR---ITDIGEVSQFLTEGIIMKDFSHPNVL 99
Query: 485 KFYGFCSHARHS-ILIYEYLKRGSLATNLSNDA----------------------AAEEL 521
G C + S +++ Y+K G L + N+ A+++
Sbjct: 100 SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKF 159
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFL---KPDSSN----------WSALVGTYRYVA 565
D++++N +LD + V+DFG+A+ + + DS + W AL
Sbjct: 160 VHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ---T 216
Query: 566 PDYRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624
+ K DV+SF VL E++ +G P V++ + ++ R +L P P
Sbjct: 217 QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR--RLLQPEYCPD----- 269
Query: 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ EV C E RP+ + ++
Sbjct: 270 ----PLYEVMLKCWHPKAEMRPSFSELVSRI 296
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 106/269 (39%), Gaps = 57/269 (21%)
Query: 429 IGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G VY L K AVK N I + +F E + H N++
Sbjct: 35 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR---ITDIGEVSQFLTEGIIMKDFSHPNVL 91
Query: 485 KFYGFCSHARHS-ILIYEYLKRGSLATNLSNDA----------------------AAEEL 521
G C + S +++ Y+K G L + N+ A+++
Sbjct: 92 SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKF 151
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT-----YRYVAPD------ 567
D++++N +LD + V+DFG+A+ + D +S T +++A +
Sbjct: 152 VHRDLAARNCMLDEKFTVKVADFGLARDMY-DKEYYSVHNKTGAKLPVKWMALESLQTQK 210
Query: 568 YRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626
+ K DV+SF VL E++ +G P V++ + ++ R +L P P
Sbjct: 211 FTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR--RLLQPEYCPD------- 261
Query: 627 LISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ EV C E RP+ + ++
Sbjct: 262 --PLYEVMLKCWHPKAEMRPSFSELVSRI 288
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 104/271 (38%), Gaps = 61/271 (22%)
Query: 429 IGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G VY L K AVK N I + +F E + H N++
Sbjct: 38 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR---ITDIGEVSQFLTEGIIMKDFSHPNVL 94
Query: 485 KFYGFCSHARHS-ILIYEYLKRGSLATNLSNDA----------------------AAEEL 521
G C + S +++ Y+K G L + N+ A+++
Sbjct: 95 SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKF 154
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFL---KPDSSN----------WSALVGTYRYVA 565
D++++N +LD + V+DFG+A+ + + DS + W AL
Sbjct: 155 VHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ---T 211
Query: 566 PDYRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624
+ K DV+SF VL E++ +G P V++ + ++ R +L P P
Sbjct: 212 QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR--RLLQPEYCPD----- 264
Query: 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ EV C E RP+ + ++
Sbjct: 265 ----PLYEVMLKCWHPKAEMRPSFSELVSRI 291
>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In
Complex With An Mk-2461 Analog With Specificity For The
Activated Receptor
pdb|3R7O|A Chain A, Structure Of Dually Phosphorylated C-Met Receptor Kinase
In Complex With An Mk-2461 Analog
Length = 307
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 100/271 (36%), Gaps = 61/271 (22%)
Query: 429 IGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G VY L K AVK N I + +F E + H N++
Sbjct: 37 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR---ITDIGEVSQFLTEGIIMKDFSHPNVL 93
Query: 485 KFYGFCSHARHS-ILIYEYLKRGSLATNLSNDA----------------------AAEEL 521
G C + S +++ Y+K G L + N+ A+++
Sbjct: 94 SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKF 153
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-------------NWSALVGTYRYVA 565
D++++N +LD + V+DFG+A+ + W AL
Sbjct: 154 VHRDLAARNCMLDEKFTVKVADFGLARDMYDKEXXSVHNKTGAKLPVKWMALESLQ---T 210
Query: 566 PDYRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624
+ K DV+SF VL E++ +G P V++ + ++ R +L P P
Sbjct: 211 QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR--RLLQPEYCPD----- 263
Query: 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ EV C E RP+ + ++
Sbjct: 264 ----PLYEVMLKCWHPKAEMRPSFSELVSRI 290
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 104/271 (38%), Gaps = 61/271 (22%)
Query: 429 IGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G VY L K AVK N I + +F E + H N++
Sbjct: 38 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR---ITDIGEVSQFLTEGIIMKDFSHPNVL 94
Query: 485 KFYGFCSHARHS-ILIYEYLKRGSLATNLSNDA----------------------AAEEL 521
G C + S +++ Y+K G L + N+ A+++
Sbjct: 95 SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKF 154
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFL---KPDSSN----------WSALVGTYRYVA 565
D++++N +LD + V+DFG+A+ + + DS + W AL
Sbjct: 155 VHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ---T 211
Query: 566 PDYRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624
+ K DV+SF VL E++ +G P V++ + ++ R +L P P
Sbjct: 212 QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR--RLLQPEYCPD----- 264
Query: 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ EV C E RP+ + ++
Sbjct: 265 ----PLYEVMLKCWHPKAEMRPSFSELVSRI 291
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 106/269 (39%), Gaps = 57/269 (21%)
Query: 429 IGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G VY L K AVK N I + +F E + H N++
Sbjct: 36 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR---ITDIGEVSQFLTEGIIMKDFSHPNVL 92
Query: 485 KFYGFCSHARHS-ILIYEYLKRGSLATNLSNDA----------------------AAEEL 521
G C + S +++ Y+K G L + N+ A+++
Sbjct: 93 SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKF 152
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT-----YRYVAPD------ 567
D++++N +LD + V+DFG+A+ + D +S T +++A +
Sbjct: 153 VHRDLAARNCMLDEKFTVKVADFGLARDMY-DKEYYSVHNKTGAKLPVKWMALESLQTQK 211
Query: 568 YRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626
+ K DV+SF VL E++ +G P V++ + ++ R +L P P
Sbjct: 212 FTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR--RLLQPEYCPD------- 262
Query: 627 LISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ EV C E RP+ + ++
Sbjct: 263 --PLYEVMLKCWHPKAEMRPSFSELVSRI 289
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 106/269 (39%), Gaps = 57/269 (21%)
Query: 429 IGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G VY L K AVK N I + +F E + H N++
Sbjct: 37 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR---ITDIGEVSQFLTEGIIMKDFSHPNVL 93
Query: 485 KFYGFCSHARHS-ILIYEYLKRGSLATNLSNDA----------------------AAEEL 521
G C + S +++ Y+K G L + N+ A+++
Sbjct: 94 SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKF 153
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT-----YRYVAPD------ 567
D++++N +LD + V+DFG+A+ + D +S T +++A +
Sbjct: 154 VHRDLAARNCMLDEKFTVKVADFGLARDMY-DKEYYSVHNKTGAKLPVKWMALESLQTQK 212
Query: 568 YRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626
+ K DV+SF VL E++ +G P V++ + ++ R +L P P
Sbjct: 213 FTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR--RLLQPEYCPD------- 263
Query: 627 LISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ EV C E RP+ + ++
Sbjct: 264 --PLYEVMLKCWHPKAEMRPSFSELVSRI 290
>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5Q|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
Length = 348
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 103/264 (39%), Gaps = 57/264 (21%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQK--EFFAEIEALTKIRHRNIVK 485
IG G G+VY A ++ + E +A+KK + S + +++K + E+ L K+RH N ++
Sbjct: 62 IGHGSFGAVYFARDVRNSEVVAIKKMSY---SGKQSNEKWQDIIKEVRFLQKLRHPNTIQ 118
Query: 486 FYGFCSHARHSILIYEY-LKRGSLATNLSNDAAAE-----------------------EL 521
+ G + L+ EY L S + E
Sbjct: 119 YRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHR 178
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD---------YRKKC 572
D+ + N+LL + DFG A + P + VGT ++AP+ Y K
Sbjct: 179 DVKAGNILLSEPGLVKLGDFGSASIMAPANX----FVGTPYWMAPEVILAMDEGQYDGKV 234
Query: 573 DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
DV+S + +E+ + K P + NM L SP +Q S
Sbjct: 235 DVWSLGITCIELAERK------------PPLFNMNAMSALYHIAQNESPALQSGHWSEYF 282
Query: 633 VAF--SCLDVSPESRPTMQTITQQ 654
F SCL P+ RPT + + +
Sbjct: 283 RNFVDSCLQKIPQDRPTSEVLLKH 306
>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
pdb|3SLS|B Chain B, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
Length = 304
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 111/266 (41%), Gaps = 49/266 (18%)
Query: 421 NDFDAKYCIGSGRHGSVYR-AELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
+DF+ +G+G G V++ + PS +A K + + A + + E++ L +
Sbjct: 25 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKP---AIRNQIIRELQVLHECN 81
Query: 480 HRNIVKFYG-FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL----------------- 521
IV FYG F S SI + E++ GSL L E
Sbjct: 82 SPYIVGFYGAFYSDGEISICM-EHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLR 140
Query: 522 --------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
D+ N+L++ + + DFG++ L +N + VGT Y++P+
Sbjct: 141 EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN--SFVGTRSYMSPERLQGTH 198
Query: 568 YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627
Y + D++S + +E+ G++P G S +M + E+LD + P P + +
Sbjct: 199 YSVQSDIWSMGLSLVEMAVGRYPIGSGSG--------SMAIFELLDYIVNEPPPKLPSGV 250
Query: 628 ISIMEVAF--SCLDVSPESRPTMQTI 651
S+ F CL +P R ++ +
Sbjct: 251 FSLEFQDFVNKCLIKNPAERADLKQL 276
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 104/271 (38%), Gaps = 61/271 (22%)
Query: 429 IGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G VY L K AVK N I + +F E + H N++
Sbjct: 36 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR---ITDIGEVSQFLTEGIIMKDFSHPNVL 92
Query: 485 KFYGFCSHARHS-ILIYEYLKRGSLATNLSNDA----------------------AAEEL 521
G C + S +++ Y+K G L + N+ A+++
Sbjct: 93 SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKF 152
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFL---KPDSSN----------WSALVGTYRYVA 565
D++++N +LD + V+DFG+A+ + + DS + W AL
Sbjct: 153 VHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ---T 209
Query: 566 PDYRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624
+ K DV+SF VL E++ +G P V++ + ++ R +L P P
Sbjct: 210 QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR--RLLQPEYCPD----- 262
Query: 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ EV C E RP+ + ++
Sbjct: 263 ----PLYEVMLKCWHPKAEMRPSFSELVSRI 289
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 106/269 (39%), Gaps = 57/269 (21%)
Query: 429 IGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G VY L K AVK N I + +F E + H N++
Sbjct: 38 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR---ITDIGEVSQFLTEGIIMKDFSHPNVL 94
Query: 485 KFYGFCSHARHS-ILIYEYLKRGSLATNLSNDA----------------------AAEEL 521
G C + S +++ Y+K G L + N+ A+++
Sbjct: 95 SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKF 154
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT-----YRYVAPD------ 567
D++++N +LD + V+DFG+A+ + D +S T +++A +
Sbjct: 155 VHRDLAARNCMLDEKFTVKVADFGLARDMY-DKEYYSVHNKTGAKLPVKWMALESLQTQK 213
Query: 568 YRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626
+ K DV+SF VL E++ +G P V++ + ++ R +L P P
Sbjct: 214 FTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR--RLLQPEYCPD------- 264
Query: 627 LISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ EV C E RP+ + ++
Sbjct: 265 --PLYEVMLKCWHPKAEMRPSFSELVSRI 291
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 106/269 (39%), Gaps = 57/269 (21%)
Query: 429 IGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G VY L K AVK N I + +F E + H N++
Sbjct: 33 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR---ITDIGEVSQFLTEGIIMKDFSHPNVL 89
Query: 485 KFYGFCSHARHS-ILIYEYLKRGSLATNLSNDA----------------------AAEEL 521
G C + S +++ Y+K G L + N+ A+++
Sbjct: 90 SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKF 149
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT-----YRYVAPD------ 567
D++++N +LD + V+DFG+A+ + D +S T +++A +
Sbjct: 150 VHRDLAARNCMLDEKFTVKVADFGLARDMY-DKEYYSVHNKTGAKLPVKWMALESLQTQK 208
Query: 568 YRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626
+ K DV+SF VL E++ +G P V++ + ++ R +L P P
Sbjct: 209 FTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR--RLLQPEYCPD------- 259
Query: 627 LISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ EV C E RP+ + ++
Sbjct: 260 --PLYEVMLKCWHPKAEMRPSFSELVSRI 286
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 214 FGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDL 273
F KL +L +L+L NQL LT L +LNL+ N+ SL L L LDL
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164
Query: 274 SKYQFIQELPKEL-GKLVQLSELELSHNFLGREIPSQI 310
S Y +Q LP+ + KL QL +L L N L + +P +
Sbjct: 165 S-YNQLQSLPEGVFDKLTQLKDLRLYQNQL-KSVPDGV 200
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 216 KLNSLTKLILRGNQLIGHLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS 274
+L +LT LIL GNQL LP+ + LT L+ L L N+ SL L L YL+L+
Sbjct: 83 ELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141
Query: 275 KYQFIQELPKEL-GKLVQLSELELSHNFL 302
Q +Q LPK + KL L+EL+LS+N L
Sbjct: 142 HNQ-LQSLPKGVFDKLTNLTELDLSYNQL 169
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 4/156 (2%)
Query: 105 VGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIAS 164
+GGN L+ NL + L GN ++ + F NL L + +N
Sbjct: 70 LGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG 127
Query: 165 NWGKCPKLSTLNVSMNNITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKL 223
+ K L+ LN++ N + +S+P + L+ L E DLS N + F KL L L
Sbjct: 128 VFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186
Query: 224 ILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIP 259
L NQL LT L+++ L N + P
Sbjct: 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFE 60
LTNL L+L N L L L +L +L L NQ + SLP V L+ L+ L L++
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQ 190
Query: 61 NNLSGSIPPSV 71
N L S+P V
Sbjct: 191 NQLK-SVPDGV 200
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFE 60
LTNL EL L N L L L L L L NQ + S+P V L+SL+Y++L +
Sbjct: 156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHD 214
Query: 61 NNLSGSIP 68
N + P
Sbjct: 215 NPWDCTCP 222
>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site
Inhibitor Showing High Selectivity Within The Janus
Kinase Family
Length = 315
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 103/253 (40%), Gaps = 52/253 (20%)
Query: 447 FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFC-SHARHSI-LIYEYLK 504
+AVK+ P DQ Q++F EI+ L + IVK+ G R S+ L+ EYL
Sbjct: 42 LVAVKQLQHSGP-DQ---QRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLP 97
Query: 505 RGSLATNLSNDAA---AEEL----------------------DISSKNVLLDLEHKAHVS 539
G L L A A L D++++N+L++ E ++
Sbjct: 98 SGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIA 157
Query: 540 DFGIAKFLKPDSSNWSALVGTYR---YVAPD------YRKKCDVYSFRVLALEVI----K 586
DFG+AK L D + + AP+ + ++ DV+SF V+ E+ K
Sbjct: 158 DFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDK 217
Query: 587 GKHPRGFVSSILPS----PSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSP 642
P ++ P++ + RLP P P ++ +M++ C SP
Sbjct: 218 SCSPSAEFLRMMGCERDVPALCRLLELLEEGQRLPAP-PACPAEVHELMKL---CWAPSP 273
Query: 643 ESRPTMQTITQQL 655
+ RP+ + QL
Sbjct: 274 QDRPSFSALGPQL 286
>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure
pdb|2GCD|B Chain B, Tao2 Kinase Domain-Staurosporine Structure
Length = 309
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 103/264 (39%), Gaps = 57/264 (21%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQK--EFFAEIEALTKIRHRNIVK 485
IG G G+VY A ++ + E +A+KK + S + +++K + E+ L K+RH N ++
Sbjct: 23 IGHGSFGAVYFARDVRNSEVVAIKKMSY---SGKQSNEKWQDIIKEVRFLQKLRHPNTIQ 79
Query: 486 FYGFCSHARHSILIYEY-LKRGSLATNLSNDAAAE-----------------------EL 521
+ G + L+ EY L S + E
Sbjct: 80 YRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHR 139
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD---------YRKKC 572
D+ + N+LL + DFG A + P + VGT ++AP+ Y K
Sbjct: 140 DVKAGNILLSEPGLVKLGDFGSASIMAPANX----FVGTPYWMAPEVILAMDEGQYDGKV 195
Query: 573 DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
DV+S + +E+ + K P + NM L SP +Q S
Sbjct: 196 DVWSLGITCIELAERK------------PPLFNMNAMSALYHIAQNESPALQSGHWSEYF 243
Query: 633 VAF--SCLDVSPESRPTMQTITQQ 654
F SCL P+ RPT + + +
Sbjct: 244 RNFVDSCLQKIPQDRPTSEVLLKH 267
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 104/271 (38%), Gaps = 61/271 (22%)
Query: 429 IGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G VY L K AVK N I + +F E + H N++
Sbjct: 97 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR---ITDIGEVSQFLTEGIIMKDFSHPNVL 153
Query: 485 KFYGFCSHARHS-ILIYEYLKRGSLATNLSNDA----------------------AAEEL 521
G C + S +++ Y+K G L + N+ A+++
Sbjct: 154 SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKF 213
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFL---KPDSSN----------WSALVGTYRYVA 565
D++++N +LD + V+DFG+A+ + + DS + W AL
Sbjct: 214 VHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ---T 270
Query: 566 PDYRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624
+ K DV+SF VL E++ +G P V++ + ++ R +L P P
Sbjct: 271 QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR--RLLQPEYCPD----- 323
Query: 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ EV C E RP+ + ++
Sbjct: 324 ----PLYEVMLKCWHPKAEMRPSFSELVSRI 350
>pdb|2UV2|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To
4-(4-(
5-Cyclopropyl-1h-Pyrazol-3-Ylamino)-Quinazolin-2-
Ylamino)- Phenyl)-Acetonitrile
Length = 287
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 84/216 (38%), Gaps = 41/216 (18%)
Query: 413 YVEIIRAINDFDAKYCIGS-GRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
Y + R +N D IG G G VY+A+ LA K +++ D + E
Sbjct: 1 YEHVTRDLNPEDFWEIIGELGDFGKVYKAQNKETSVLAAAKVIDTKSEEELED---YMVE 57
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL----------------------- 508
I+ L H NIVK + + ++ E+ G++
Sbjct: 58 IDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQT 117
Query: 509 --ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGI-AKFLKPDSSNWSALVGTYRYVA 565
A N +D D+ + N+L L+ ++DFG+ AK + + +GT ++A
Sbjct: 118 LDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTXIQRRDSFIGTPYWMA 177
Query: 566 PD-----------YRKKCDVYSFRVLALEVIKGKHP 590
P+ Y K DV+S + +E+ + + P
Sbjct: 178 PEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPP 213
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 75/191 (39%), Gaps = 33/191 (17%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G G +G VY+A+ +A+K+ + I EI L ++ H NIV
Sbjct: 29 VGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTA--IREISLLKELHHPNIVSLID 86
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------------------LDIS 524
R L++E++++ N ++ D+
Sbjct: 87 VIHSERCLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLK 146
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKCDVYSF 577
+N+L++ + ++DFG+A+ +++ V T Y APD Y D++S
Sbjct: 147 PQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSI 206
Query: 578 RVLALEVIKGK 588
+ E+I GK
Sbjct: 207 GCIFAEMITGK 217
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 75/191 (39%), Gaps = 33/191 (17%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G G +G VY+A+ +A+K+ + I EI L ++ H NIV
Sbjct: 29 VGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTA--IREISLLKELHHPNIVSLID 86
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------------------LDIS 524
R L++E++++ N ++ D+
Sbjct: 87 VIHSERCLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLK 146
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKCDVYSF 577
+N+L++ + ++DFG+A+ +++ V T Y APD Y D++S
Sbjct: 147 PQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSI 206
Query: 578 RVLALEVIKGK 588
+ E+I GK
Sbjct: 207 GCIFAEMITGK 217
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 85/225 (37%), Gaps = 42/225 (18%)
Query: 405 LSFKGKFDYVEIIRAINDFDAKYCIG---SGRHGSVYRAELPSKEFLAVKKFNSPLPSDQ 461
L F+ Y + R +N D IG G G VY+A+ LA K ++
Sbjct: 18 LYFQSMKQYEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEE 77
Query: 462 IADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------------- 508
+ D + EI+ L H NIVK + + ++ E+ G++
Sbjct: 78 LED---YMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTE 134
Query: 509 ------------ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556
A N +D D+ + N+L L+ ++DFG++ +
Sbjct: 135 SQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDS 194
Query: 557 LVGTYRYVAPD-----------YRKKCDVYSFRVLALEVIKGKHP 590
+GT ++AP+ Y K DV+S + +E+ + + P
Sbjct: 195 FIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPP 239
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 85/225 (37%), Gaps = 42/225 (18%)
Query: 405 LSFKGKFDYVEIIRAINDFDAKYCIG---SGRHGSVYRAELPSKEFLAVKKFNSPLPSDQ 461
L F+ Y + R +N D IG G G VY+A+ LA K ++
Sbjct: 18 LYFQSMKQYEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEE 77
Query: 462 IADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------------- 508
+ D + EI+ L H NIVK + + ++ E+ G++
Sbjct: 78 LED---YMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTE 134
Query: 509 ------------ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556
A N +D D+ + N+L L+ ++DFG++ +
Sbjct: 135 SQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRXIQRRDS 194
Query: 557 LVGTYRYVAPD-----------YRKKCDVYSFRVLALEVIKGKHP 590
+GT ++AP+ Y K DV+S + +E+ + + P
Sbjct: 195 FIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPP 239
>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXL|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 327
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 103/253 (40%), Gaps = 52/253 (20%)
Query: 447 FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFC-SHARHSI-LIYEYLK 504
+AVK+ P DQ Q++F EI+ L + IVK+ G R S+ L+ EYL
Sbjct: 54 LVAVKQLQHSGP-DQ---QRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLP 109
Query: 505 RGSLATNLSNDAA---AEEL----------------------DISSKNVLLDLEHKAHVS 539
G L L A A L D++++N+L++ E ++
Sbjct: 110 SGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIA 169
Query: 540 DFGIAKFLKPDSSNWSALVGTYR---YVAPD------YRKKCDVYSFRVLALEVI----K 586
DFG+AK L D + + AP+ + ++ DV+SF V+ E+ K
Sbjct: 170 DFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDK 229
Query: 587 GKHPRGFVSSILPS----PSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSP 642
P ++ P++ + RLP P P ++ +M++ C SP
Sbjct: 230 SCSPSAEFLRMMGCERDVPALSRLLELLEEGQRLPAP-PACPAEVHELMKL---CWAPSP 285
Query: 643 ESRPTMQTITQQL 655
+ RP+ + QL
Sbjct: 286 QDRPSFSALGPQL 298
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 86/217 (39%), Gaps = 58/217 (26%)
Query: 421 NDFDAKYCIGSGRHGSVYRAELPSKEF---LAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
ND + IG G G V +A + A+K+ D D ++F E+E L K
Sbjct: 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD---DHRDFAGELEVLCK 81
Query: 478 IRHR-NIVKFYGFCSHARHSILIYEYLKRGSL------------------ATNLSNDAAA 518
+ H NI+ G C H + L EY G+L A + ++ ++
Sbjct: 82 LGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSS 141
Query: 519 EEL----------------------DISSKNVLLDLEHKAHVSDFGIAK----FLKPDSS 552
++L D++++N+L+ + A ++DFG+++ ++K
Sbjct: 142 QQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMG 201
Query: 553 ----NWSALVGTYRYVAPDYRKKCDVYSFRVLALEVI 585
W A+ V Y DV+S+ VL E++
Sbjct: 202 RLPVRWMAIESLNYSV---YTTNSDVWSYGVLLWEIV 235
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 86/217 (39%), Gaps = 58/217 (26%)
Query: 421 NDFDAKYCIGSGRHGSVYRAELPSKEF---LAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
ND + IG G G V +A + A+K+ D D ++F E+E L K
Sbjct: 15 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD---DHRDFAGELEVLCK 71
Query: 478 IRHR-NIVKFYGFCSHARHSILIYEYLKRGSL------------------ATNLSNDAAA 518
+ H NI+ G C H + L EY G+L A + ++ ++
Sbjct: 72 LGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSS 131
Query: 519 EEL----------------------DISSKNVLLDLEHKAHVSDFGIAK----FLKPDSS 552
++L D++++N+L+ + A ++DFG+++ ++K
Sbjct: 132 QQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMG 191
Query: 553 ----NWSALVGTYRYVAPDYRKKCDVYSFRVLALEVI 585
W A+ V Y DV+S+ VL E++
Sbjct: 192 RLPVRWMAIESLNYSV---YTTNSDVWSYGVLLWEIV 225
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 79/202 (39%), Gaps = 49/202 (24%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IGSG G+VY+ + + + K P P A F E+ L K RH NI+ F G
Sbjct: 44 IGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQA----FRNEVAVLRKTRHVNILLFMG 99
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-------------------------DI 523
+ + +I + ++ + SL +L ++ D+
Sbjct: 100 YMTKDNLAI-VTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDM 158
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL------VGTYRYVAPD---------Y 568
S N+ L + DFG+A S WS G+ ++AP+ +
Sbjct: 159 KSNNIFLHEGLTVKIGDFGLATV----KSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPF 214
Query: 569 RKKCDVYSFRVLALEVIKGKHP 590
+ DVYS+ ++ E++ G+ P
Sbjct: 215 SFQSDVYSYGIVLYELMTGELP 236
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 9/208 (4%)
Query: 98 GALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNN 157
A +R+ + GN R C NL + L N + + AF L LD+SDN
Sbjct: 31 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 90
Query: 158 FFGEI-ASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGK 216
+ + + +L TL++ + P L+ L L N + F
Sbjct: 91 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 150
Query: 217 LNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKY 276
L +LT L L GN++ L L+ L L NR + + P + +L +L ++ Y
Sbjct: 151 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL----MTLY 206
Query: 277 QF---IQELPKE-LGKLVQLSELELSHN 300
F + LP E L L L L L+ N
Sbjct: 207 LFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
+L NL L L N ++ + L SL +L L N+ P + +L L L+LF
Sbjct: 150 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 209
Query: 61 NNLSGSIPPSVGNL-MLTVLALENNHFTGNLR 91
NNLS ++ L L L L +N + + R
Sbjct: 210 NNLSALPTEALAPLRALQYLRLNDNPWVCDCR 241
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 2 LTNLRELHLRDNYLTGLIPTETW-NLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L L+ L+L+DN L L P +T+ +L +L L L GN+ + L SL L L +
Sbjct: 127 LAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 185
Query: 61 NNLSGSIPPSVGNL--MLTVLALENN 84
N ++ P + +L ++T+ NN
Sbjct: 186 NRVAHVHPHAFRDLGRLMTLYLFANN 211
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 84/225 (37%), Gaps = 42/225 (18%)
Query: 405 LSFKGKFDYVEIIRAINDFDAKYCIG---SGRHGSVYRAELPSKEFLAVKKFNSPLPSDQ 461
L F+ Y + R +N D IG G G VY+A+ LA K ++
Sbjct: 18 LYFQSMKQYEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEE 77
Query: 462 IADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------------- 508
+ D + EI+ L H NIVK + + ++ E+ G++
Sbjct: 78 LED---YMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTE 134
Query: 509 ------------ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556
A N +D D+ + N+L L+ ++DFG++
Sbjct: 135 SQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRXIQRRDX 194
Query: 557 LVGTYRYVAPD-----------YRKKCDVYSFRVLALEVIKGKHP 590
+GT ++AP+ Y K DV+S + +E+ + + P
Sbjct: 195 FIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPP 239
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 112/282 (39%), Gaps = 70/282 (24%)
Query: 423 FDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RH 480
F+ +G+G +G VY+ + + + A+K + + D+ ++E EI L K H
Sbjct: 26 FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMD--VTGDE---EEEIKQEINMLKKYSHH 80
Query: 481 RNIVKFYG-FCSHARHSI-----LIYEYLKRGS---LATNLSNDAAAEEL---------- 521
RNI +YG F + L+ E+ GS L N + EE
Sbjct: 81 RNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILR 140
Query: 522 -------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD- 567
DI +NVLL + + DFG++ L + +GT ++AP+
Sbjct: 141 GLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEV 200
Query: 568 ----------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLP 617
Y K D++S + A+E+ +G P + + P ++ L PR P
Sbjct: 201 IACDENPDATYDFKSDLWSLGITAIEMAEGAPP---LCDMHPMRALF-------LIPRNP 250
Query: 618 PP---SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656
P S K S +E SCL + RP T+QL+
Sbjct: 251 APRLKSKKWSKKFQSFIE---SCLVKNHSQRPA----TEQLM 285
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 9/208 (4%)
Query: 98 GALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNN 157
A +R+ + GN R C NL + L N + + AF L LD+SDN
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 158 FFGEI-ASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGK 216
+ + + +L TL++ + P L+ L L N + F
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 217 LNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKY 276
L +LT L L GN++ L L+ L L NR + + P + +L +L ++ Y
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL----MTLY 207
Query: 277 QF---IQELPKE-LGKLVQLSELELSHN 300
F + LP E L L L L L+ N
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
+L NL L L N ++ + L SL +L L N+ P + +L L L+LF
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210
Query: 61 NNLSGSIPPSVGNL-MLTVLALENNHFTGNLR 91
NNLS ++ L L L L +N + + R
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 2 LTNLRELHLRDNYLTGLIPTETW-NLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L L+ L+L+DN L L P +T+ +L +L L L GN+ + L SL L L +
Sbjct: 128 LAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186
Query: 61 NNLSGSIPPSVGNL--MLTVLALENN 84
N ++ P + +L ++T+ NN
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANN 212
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 43/206 (20%)
Query: 429 IGSGRHGSVYRAELPS----KEFLAVKK--FNSPLPSDQIAD----QKEFFAEIEALTKI 478
+GSG +G V + + K +KK F+ SD + +E + EI L +
Sbjct: 44 LGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSL 103
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL----------------- 521
H NI+K + ++ L+ E+ + G L + N +E
Sbjct: 104 DHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLH 163
Query: 522 -------DISSKNVLLDLEH---KAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD---- 567
DI +N+LL+ ++ + DFG++ F D L GT Y+AP+
Sbjct: 164 KHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRL-GTAYYIAPEVLKK 222
Query: 568 -YRKKCDVYSFRVLALEVIKGKHPRG 592
Y +KCDV+S V+ ++ G P G
Sbjct: 223 KYNEKCDVWSCGVIMYILLCGYPPFG 248
>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70
Length = 613
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 113/274 (41%), Gaps = 58/274 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
GS R G VYR + +A+K + AD +E E + + ++ + IV+ G
Sbjct: 349 FGSVRQG-VYRMRKKQID-VAIKVLKQ---GTEKADTEEMMREAQIMHQLDNPYIVRLIG 403
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDAAAEELDIS------------------------ 524
C A +L+ E G L L EE+ +S
Sbjct: 404 VC-QAEALMLVMEMAGGGPLHKFLVGKR--EEIPVSNVAELLHQVSMGMKYLEEKNFVHR 460
Query: 525 ---SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL-VGTY--RYVAPD---YRK---KC 572
++NVLL H A +SDFG++K L D S ++A G + ++ AP+ +RK +
Sbjct: 461 NLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRS 520
Query: 573 DVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIM 631
DV+S+ V E + G+ P + P V+ +++ PP P +L ++M
Sbjct: 521 DVWSYGVTMWEALSYGQKP----YKKMKGPEVMAF-IEQGKRMECPPECPP---ELYALM 572
Query: 632 EVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYA 665
C E RP T+ Q++ Y+S A
Sbjct: 573 S---DCWIYKWEDRPDFLTVEQRM--RACYYSLA 601
>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 290
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 44/223 (19%)
Query: 471 EIEALTKIRHRNIVKFYGFC-SHARHSI-LIYEYLKRGSLATNLSNDAA--------AEE 520
EIE L + H +IVK+ G C S+ L+ EY+ GSL L A++
Sbjct: 60 EIEILRTLYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDYLPRHCVGLAQLLLFAQQ 119
Query: 521 L---------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV----GTY 561
+ ++++NVLLD + + DFG+AK + P+ + +
Sbjct: 120 ICEGMAYLHAQHYIHRALAARNVLLDNDRLVKIGDFGLAKAV-PEGHEYYRVREDGDSPV 178
Query: 562 RYVAPDYRKKC------DVYSFRVLALEVI----KGKHPRGFVSSIL--PSPSVINMRLD 609
+ AP+ K+C DV+SF V E++ + P + ++ + +RL
Sbjct: 179 FWYAPECLKECKFYYASDVWSFGVTLYELLTYCDSNQSPHTKFTELIGHTQGQMTVLRLT 238
Query: 610 EMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTIT 652
E+L+ P PD I + +C + RPT Q +
Sbjct: 239 ELLERGERLPRPDRCP--CEIYHLMKNCWETEASFRPTFQNLV 279
>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 291
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 44/223 (19%)
Query: 471 EIEALTKIRHRNIVKFYGFC-SHARHSI-LIYEYLKRGSLATNLSNDAA--------AEE 520
EIE L + H +IVK+ G C S+ L+ EY+ GSL L A++
Sbjct: 61 EIEILRTLYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDYLPRHCVGLAQLLLFAQQ 120
Query: 521 L---------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV----GTY 561
+ ++++NVLLD + + DFG+AK + P+ + +
Sbjct: 121 ICEGMAYLHAQHYIHRALAARNVLLDNDRLVKIGDFGLAKAV-PEGHEYYRVREDGDSPV 179
Query: 562 RYVAPDYRKKC------DVYSFRVLALEVI----KGKHPRGFVSSIL--PSPSVINMRLD 609
+ AP+ K+C DV+SF V E++ + P + ++ + +RL
Sbjct: 180 FWYAPECLKECKFYYASDVWSFGVTLYELLTYCDSNQSPHTKFTELIGHTQGQMTVLRLT 239
Query: 610 EMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTIT 652
E+L+ P PD I + +C + RPT Q +
Sbjct: 240 ELLERGERLPRPDRCP--CEIYHLMKNCWETEASFRPTFQNLV 280
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 111/266 (41%), Gaps = 53/266 (19%)
Query: 421 NDFDAKYCIGSGRHGSVYR-AELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
+DF+ +G+G G V++ + PS +A K + + + A + + E++ L +
Sbjct: 9 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHECN 65
Query: 480 HRNIVKFYG-FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL----------------- 521
IV FYG F S SI + E++ GSL L E
Sbjct: 66 SPYIVGFYGAFYSDGEISICM-EHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLR 124
Query: 522 --------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
D+ N+L++ + + DFG++ L + +N VGT Y++P+
Sbjct: 125 EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDEMAN--EFVGTRSYMSPERLQGTH 182
Query: 568 YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627
Y + D++S + +E+ G++PR P M + E+LD + P P + +
Sbjct: 183 YSVQSDIWSMGLSLVEMAVGRYPR-------PP-----MAIFELLDYIVNEPPPKLPSAV 230
Query: 628 ISIMEVAF--SCLDVSPESRPTMQTI 651
S+ F CL +P R ++ +
Sbjct: 231 FSLEFQDFVNKCLIKNPAERADLKQL 256
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 120/320 (37%), Gaps = 93/320 (29%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
L NL +++ +N LT + P + NL LV + + NQ P + NL++L L LF
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLF-- 115
Query: 62 NLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNC 121
NN T L+N
Sbjct: 116 ---------------------NNQITD--------------------------IDPLKNL 128
Query: 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNN 181
NL R+ L N TIS+ + L LN S N
Sbjct: 129 TNLNRLELSSN----TISDISAL----------------------SGLTSLQQLNFSSNQ 162
Query: 182 ITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSL 241
+T PL NL+TL D+S N V I KL +L LI NQ+ P +G L
Sbjct: 163 VTDLKPL--ANLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP--LGIL 216
Query: 242 TKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNF 301
T L+ L+L+ N+ + +L +L L LDL+ Q P L L +L+EL+L N
Sbjct: 217 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 272
Query: 302 LGREIP----SQICSMECCE 317
+ P + + ++E E
Sbjct: 273 ISNISPLAGLTALTNLELNE 292
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 22/89 (24%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLP----------------- 44
LTNL +L L +N ++ L P L L +L LG NQ P
Sbjct: 238 LTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 295
Query: 45 ---SSVGNLSSLRYLFLFENNLSGSIPPS 70
S + NL +L YL L+ NN+S P S
Sbjct: 296 EDISPISNLKNLTYLTLYFNNISDISPVS 324
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 43/223 (19%)
Query: 464 DQKEFFAEIEALTKIRHRNIVKF-------------YGFCS--------HARHSIL---- 498
+++E E+ L ++H NIV++ +C +A+ +L
Sbjct: 66 EREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQED 125
Query: 499 -IYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL 557
I ++ + LA +D DI S+N+ L + + DFGIA+ L A
Sbjct: 126 QILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARAC 185
Query: 558 VGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEM 611
+GT Y++P+ Y K D+++ + E+ KH + S+ N+ L ++
Sbjct: 186 IGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHA-------FEAGSMKNLVL-KI 237
Query: 612 LDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQ 654
+ PP S L S++ F +P RP++ +I ++
Sbjct: 238 ISGSFPPVSLHYSYDLRSLVSQLFK---RNPRDRPSVNSILEK 277
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 83/207 (40%), Gaps = 39/207 (18%)
Query: 420 INDFDAKYCIGSGRHGSVYR-AELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
++ +D +G+G G V+R E + A K +P SD+ +KE I+ ++ +
Sbjct: 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKE----IQTMSVL 211
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSL-------ATNLSNDAAAE------------ 519
RH +V + ++IYE++ G L +S D A E
Sbjct: 212 RHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHM 271
Query: 520 ------ELDISSKNVLLDLEHKAHVS--DFGIAKFLKPDSSNWSALVGTYRYVAPDYRKK 571
LD+ +N++ + + DFG+ L P S GT + AP+ +
Sbjct: 272 HENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSV-KVTTGTAEFAAPEVAEG 330
Query: 572 ------CDVYSFRVLALEVIKGKHPRG 592
D++S VL+ ++ G P G
Sbjct: 331 KPVGYYTDMWSVGVLSYILLSGLSPFG 357
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 89/222 (40%), Gaps = 56/222 (25%)
Query: 401 LLSILSFKGKFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVK-KFNSPLPS 459
LL +L +G F V ++R + D+ G +Y ++ K L V+ + + +
Sbjct: 32 LLKVLG-QGSFGKVFLVRKVTRPDS---------GHLYAMKVLKKATLKVRDRVRTKMER 81
Query: 460 DQIADQKEFFAEIEALTKIRHRNIVKF-YGFCSHARHSILIYEYLKRGSLATNLSNDAAA 518
D +AD + H +VK Y F + + LI ++L+ G L T LS +
Sbjct: 82 DILAD-------------VNHPFVVKLHYAFQTEGK-LYLILDFLRGGDLFTRLSKEVMF 127
Query: 519 EELDIS------------------------SKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554
E D+ +N+LLD E ++DFG++K
Sbjct: 128 TEEDVKFYLAELALGLDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKA 187
Query: 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
+ GT Y+AP+ + D +S+ VL E++ G P
Sbjct: 188 YSFCGTVEYMAPEVVNRQGHSHSADWWSYGVLMFEMLTGSLP 229
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 125/307 (40%), Gaps = 80/307 (26%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
L NL +++ +N LT + P + NL LV + + NQ P + NL++L L LF
Sbjct: 67 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLF-- 120
Query: 62 NLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNC 121
NN T L+N
Sbjct: 121 ---------------------NNQITD--------------------------IDPLKNL 133
Query: 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLST---LNVS 178
NL R+ L N TIS+ + + +S FG ++ L+T L++S
Sbjct: 134 TNLNRLELSSN----TISDISALSGLTSLQQLS----FGNQVTDLKPLANLTTLERLDIS 185
Query: 179 MNNITR-SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL--IGHLP 235
N ++ S+ ++ NL +L ++ N+ + I G L +L +L L GNQL IG L
Sbjct: 186 SNKVSDISVLAKLTNLESL----IATNNQISDI-TPLGILTNLDELSLNGNQLKDIGTL- 239
Query: 236 SEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSEL 295
SLT L L+L+ N+ S+L P L L KL L L Q P L L L+ L
Sbjct: 240 ---ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 292
Query: 296 ELSHNFL 302
EL+ N L
Sbjct: 293 ELNENQL 299
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 22/89 (24%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLP----------------- 44
LTNL +L L +N ++ L P L L +L LG NQ P
Sbjct: 242 LTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 299
Query: 45 ---SSVGNLSSLRYLFLFENNLSGSIPPS 70
S + NL +L YL L+ NN+S P S
Sbjct: 300 EDISPISNLKNLTYLTLYFNNISDISPVS 328
>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From
Par-3
Length = 396
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 491 SHARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAK-FLKP 549
HAR Y SLA N ++ D+ NVLLD E ++D+G+ K L+P
Sbjct: 153 EHARF------YSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 206
Query: 550 DSSNWSALVGTYRYVAP------DYRKKCDVYSFRVLALEVIKGKHPRGFVSS 596
+ S GT Y+AP DY D ++ VL E++ G+ P V S
Sbjct: 207 GDTT-STFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGS 258
>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
pdb|3G0F|B Chain B, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
Length = 336
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 115/286 (40%), Gaps = 77/286 (26%)
Query: 429 IGSGRHGSVYRA------ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHR 481
+G+G G V A + + +AVK PS + +++ +E++ L+ + H
Sbjct: 54 LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLK---PSAHLTEREALMSELKVLSYLGNHM 110
Query: 482 NIVKFYGFCSHARHSILIYEYL-----------KRGSLATNLSNDAAAEEL--------- 521
NIV G C+ +++I EY KR S + ++ A E+
Sbjct: 111 NIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDL 170
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++N+LL + DFG+A+ +K DS+ + G
Sbjct: 171 LSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARHIKNDSN--YVVKG 228
Query: 560 TYR----YVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV-INMRL 608
R ++AP+ Y + DV+S+ + E+ F P P + ++ +
Sbjct: 229 NARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL--------FSLGSSPYPGMPVDSKF 280
Query: 609 DEMLDPRLPPPSPD-VQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
+M+ SP+ ++ IM+ +C D P RPT + I Q
Sbjct: 281 YKMIKEGFRMLSPEHAPAEMYDIMK---TCWDADPLKRPTFKQIVQ 323
>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|B Chain B, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|C Chain C, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|D Chain D, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|E Chain E, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|F Chain F, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
Length = 285
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 50/210 (23%)
Query: 420 IND-FDAKYCIGSGRHGSVYRAELPS----KEFLAVKKFNSPLPSDQIADQKEFFAEIEA 474
I+D F K +GSG G V+ E S + + K S +P +QI AEIE
Sbjct: 20 IDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIE------AEIEV 73
Query: 475 LTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL----------ATNLSNDAAAEEL--- 521
L + H NI+K + + ++ E + G L LS AE +
Sbjct: 74 LKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQM 133
Query: 522 ---------------DISSKNVLLDLEHKAH----VSDFGIAKFLKPDSSNWSALVGTYR 562
D+ +N+L + H + DFG+A+ K D + +A GT
Sbjct: 134 MNALAYFHSQHVVHKDLKPENILFQ-DTSPHSPIKIIDFGLAELFKSDEHSTNA-AGTAL 191
Query: 563 YVAPDYRK-----KCDVYSFRVLALEVIKG 587
Y+AP+ K KCD++S V+ ++ G
Sbjct: 192 YMAPEVFKRDVTFKCDIWSAGVVMYFLLTG 221
>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-293 In Complex With Atp
Length = 293
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 88/217 (40%), Gaps = 44/217 (20%)
Query: 410 KFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKE- 467
++ E IR I DF + +G+G V AE +++ +A+K + + + KE
Sbjct: 9 RWKQAEDIRDIYDF--RDVLGTGAFSEVILAEDKRTQKLVAIKCI-----AKEALEGKEG 61
Query: 468 -FFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------------------ 508
EI L KI+H NIV H LI + + G L
Sbjct: 62 SMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRL 121
Query: 509 ------ATNLSNDAAAEELDISSKNVL---LDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
A +D D+ +N+L LD + K +SDFG++K P S S G
Sbjct: 122 IFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDP-GSVLSTACG 180
Query: 560 TYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
T YVAP+ Y K D +S V+A ++ G P
Sbjct: 181 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP 217
>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 311
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 86/227 (37%), Gaps = 42/227 (18%)
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------- 520
EI + H+++V F+GF ++ E +R SL A E
Sbjct: 67 EISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQI 126
Query: 521 --------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP 566
D+ N+ L+ + + + DFG+A ++ D L GT Y+AP
Sbjct: 127 VLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAP 186
Query: 567 DYRKK------CDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620
+ K DV+S + ++ GK P F +S L + + ++ +E P+ P
Sbjct: 187 EVLSKKGHSFEVDVWSIGCIMYTLLVGKPP--FETSCLKE-TYLRIKKNEYSIPKHINP- 242
Query: 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
V LI M L P +RPT+ + F+ Y P
Sbjct: 243 --VAASLIQKM------LQTDPTARPTINELLNDEFFTSGYIPARLP 281
>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8W|B Chain B, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|B Chain B, Crystal Structure Of Pkciota Kinase Domain
Length = 345
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 491 SHARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAK-FLKP 549
HAR Y SLA N ++ D+ NVLLD E ++D+G+ K L+P
Sbjct: 110 EHARF------YSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 163
Query: 550 DSSNWSALVGTYRYVAP------DYRKKCDVYSFRVLALEVIKGKHPRGFVSS 596
+ S GT Y+AP DY D ++ VL E++ G+ P V S
Sbjct: 164 GDTT-SXFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGS 215
>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|B Chain B, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|C Chain C, A Novel Small Molecule Apkc Inhibitor
Length = 349
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 491 SHARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAK-FLKP 549
HAR Y SLA N ++ D+ NVLLD E ++D+G+ K L+P
Sbjct: 106 EHARF------YSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 159
Query: 550 DSSNWSALVGTYRYVAP------DYRKKCDVYSFRVLALEVIKGKHPRGFVSS 596
+ S GT Y+AP DY D ++ VL E++ G+ P V S
Sbjct: 160 GDTT-SXFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGS 211
>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat
Length = 332
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 85/215 (39%), Gaps = 40/215 (18%)
Query: 410 KFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEF 468
++ E IR I DF + +G+G V AE +++ +A+K + +
Sbjct: 9 RWKQAEDIRDIYDF--RDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMEN- 65
Query: 469 FAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL-------------------- 508
EI L KI+H NIV H LI + + G L
Sbjct: 66 --EIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIF 123
Query: 509 ----ATNLSNDAAAEELDISSKNVL---LDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561
A +D D+ +N+L LD + K +SDFG++K P S S GT
Sbjct: 124 QVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDP-GSVLSTACGTP 182
Query: 562 RYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
YVAP+ Y K D +S V+A ++ G P
Sbjct: 183 GYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP 217
>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
pdb|4EBV|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
Length = 304
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 111/265 (41%), Gaps = 52/265 (19%)
Query: 428 CIGSGRHGSVYRAELPSKE--FLAVK-KFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
CIG G+ G V++ S E LAV K SD + +++F E + + H +IV
Sbjct: 45 CIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSV--REKFLQEALTMRQFDHPHIV 102
Query: 485 KFYG------------FCS--HARHSILIYEY-LKRGSL---ATNLSNDAAAEE------ 520
K G C+ R + + +Y L SL A LS A E
Sbjct: 103 KLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVH 162
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAPD------YRKKC 572
DI+++NVL+ + DFG++++++ DS+ + A G +++AP+ +
Sbjct: 163 RDIAARNVLVSSNDCVKLGDFGLSRYME-DSTYYKASKGKLPIKWMAPESINFRRFTSAS 221
Query: 573 DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD--PRLPPPSPDVQGKLISI 630
DV+ F V E++ + + P V N + ++ RLP P P+ L S+
Sbjct: 222 DVWMFGVCMWEIL--------MHGVKPFQGVKNNDVIGRIENGERLPMP-PNCPPTLYSL 272
Query: 631 MEVAFSCLDVSPESRPTMQTITQQL 655
M C P RP + QL
Sbjct: 273 MT---KCWAYDPSRRPRFTELKAQL 294
>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With
Nms-P937
pdb|4A4L|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
5-(2-Amino-Pyrimidin-4-Yl)-1h-Pyrrole Inhibitor
pdb|4A4O|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
2-
(2-Amino-Pyrimidin-4-Yl)-1,5,6,
7-Tetrahydro-Pyrrolopyridin- 4-One Inhibitor
Length = 311
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 86/227 (37%), Gaps = 42/227 (18%)
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------- 520
EI + H+++V F+GF ++ E +R SL A E
Sbjct: 67 EISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQI 126
Query: 521 --------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP 566
D+ N+ L+ + + + DFG+A ++ D L GT Y+AP
Sbjct: 127 VLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAP 186
Query: 567 DYRKK------CDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620
+ K DV+S + ++ GK P F +S L + + ++ +E P+ P
Sbjct: 187 EVLSKKGHSFEVDVWSIGCIMYTLLVGKPP--FETSCLKE-TYLRIKKNEYSIPKHINP- 242
Query: 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
V LI M L P +RPT+ + F+ Y P
Sbjct: 243 --VAASLIQKM------LQTDPTARPTINELLNDEFFTSGYIPARLP 281
>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak)
pdb|4I4F|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With An Allosteric Binding Pyrazolobenzothiazine
Compound
Length = 281
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 111/265 (41%), Gaps = 52/265 (19%)
Query: 428 CIGSGRHGSVYRAELPSKE--FLAVK-KFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
CIG G+ G V++ S E LAV K SD + +++F E + + H +IV
Sbjct: 22 CIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSV--REKFLQEALTMRQFDHPHIV 79
Query: 485 KFYG------------FCS--HARHSILIYEY-LKRGSL---ATNLSNDAAAEE------ 520
K G C+ R + + +Y L SL A LS A E
Sbjct: 80 KLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVH 139
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAPD------YRKKC 572
DI+++NVL+ + DFG++++++ DS+ + A G +++AP+ +
Sbjct: 140 RDIAARNVLVSSNDCVKLGDFGLSRYME-DSTYYKASKGKLPIKWMAPESINFRRFTSAS 198
Query: 573 DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD--PRLPPPSPDVQGKLISI 630
DV+ F V E++ + + P V N + ++ RLP P P+ L S+
Sbjct: 199 DVWMFGVCMWEIL--------MHGVKPFQGVKNNDVIGRIENGERLPMP-PNCPPTLYSL 249
Query: 631 MEVAFSCLDVSPESRPTMQTITQQL 655
M C P RP + QL
Sbjct: 250 MT---KCWAYDPSRRPRFTELKAQL 271
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 83/207 (40%), Gaps = 39/207 (18%)
Query: 420 INDFDAKYCIGSGRHGSVYR-AELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
++ +D +G+G G V+R E + A K +P SD+ +KE I+ ++ +
Sbjct: 50 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKE----IQTMSVL 105
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSL-------ATNLSNDAAAE------------ 519
RH +V + ++IYE++ G L +S D A E
Sbjct: 106 RHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHM 165
Query: 520 ------ELDISSKNVLLDLEHKAHVS--DFGIAKFLKPDSSNWSALVGTYRYVAPDYRKK 571
LD+ +N++ + + DFG+ L P S GT + AP+ +
Sbjct: 166 HENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSV-KVTTGTAEFAAPEVAEG 224
Query: 572 ------CDVYSFRVLALEVIKGKHPRG 592
D++S VL+ ++ G P G
Sbjct: 225 KPVGYYTDMWSVGVLSYILLSGLSPFG 251
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 84/217 (38%), Gaps = 58/217 (26%)
Query: 421 NDFDAKYCIGSGRHGSVYRAELPSKEF---LAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
ND + IG G G V +A + A+K+ D D ++F E+E L K
Sbjct: 22 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD---DHRDFAGELEVLCK 78
Query: 478 IRHR-NIVKFYGFCSHARHSILIYEYLKRGSL--------------ATNLSNDAA----- 517
+ H NI+ G C H + L EY G+L A ++N A
Sbjct: 79 LGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSS 138
Query: 518 ----------AEELD-----------ISSKNVLLDLEHKAHVSDFGIAK----FLKPDSS 552
A +D ++++N+L+ + A ++DFG+++ ++K
Sbjct: 139 QQLLHFAADVARGMDYLSQKQFIHRNLAARNILVGENYVAKIADFGLSRGQEVYVKKTMG 198
Query: 553 ----NWSALVGTYRYVAPDYRKKCDVYSFRVLALEVI 585
W A+ V Y DV+S+ VL E++
Sbjct: 199 RLPVRWMAIESLNYSV---YTTNSDVWSYGVLLWEIV 232
>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With
Inhibitor
Length = 326
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 106/256 (41%), Gaps = 78/256 (30%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFF--AEIEALTKIRHRNIVKF 486
IG GR G V+R + +E +AVK F+S +++ +F AEI +RH NI+ F
Sbjct: 37 IGKGRFGEVWRGKWRGEE-VAVKIFSSR-------EERSWFREAEIYQTVMLRHENILGF 88
Query: 487 --------------YGFCSHARHSILIYEYLKR------GSLATNLSNDAAAEEL----- 521
+ + H L ++YL R G + LS + L
Sbjct: 89 IAADNKDNGTWTQLWLVSDYHEHGSL-FDYLNRYTVTVEGMIKLALSTASGLAHLHMEIV 147
Query: 522 -----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA------LVGTYRYV 564
D+ SKN+L+ ++D G+A ++ DS+ + VGT RY+
Sbjct: 148 GTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA--VRHDSATDTIDIAPNHRVGTKRYM 205
Query: 565 APDYR------------KKCDVYSFRVLALEV-----IKGKHPRGFV--SSILPS-PSVI 604
AP+ K+ D+Y+ ++ E+ I G H + ++PS PSV
Sbjct: 206 APEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVE 265
Query: 605 NMR---LDEMLDPRLP 617
MR ++ L P +P
Sbjct: 266 EMRKVVCEQKLRPNIP 281
>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution.
pdb|2JED|B Chain B, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution
Length = 352
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 35/210 (16%)
Query: 414 VEIIRAINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEI 472
++I I DF+ +G G G V+ AE + +F A+K + + D E
Sbjct: 11 LQIKLKIEDFELHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVL--MDDDVECTMVE 68
Query: 473 EALTKIRHRNIVKFYGFCSHARHSILIY--EYLKRGSLATNL----------SNDAAAEE 520
+ + + + + FC+ L + EYL G L ++ + AAE
Sbjct: 69 KRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEI 128
Query: 521 L--------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP 566
+ D+ N+LLD + ++DFG+ K + + GT Y+AP
Sbjct: 129 ILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNEFCGTPDYIAP 188
Query: 567 D------YRKKCDVYSFRVLALEVIKGKHP 590
+ Y D +SF VL E++ G+ P
Sbjct: 189 EILLGQKYNHSVDWWSFGVLLYEMLIGQSP 218
>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536
Length = 294
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 85/221 (38%), Gaps = 42/221 (19%)
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------- 520
EI + H+++V F+GF ++ E +R SL A E
Sbjct: 65 EISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQI 124
Query: 521 --------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP 566
D+ N+ L+ + + + DFG+A ++ D L GT Y+AP
Sbjct: 125 VLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAP 184
Query: 567 DYRKK------CDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620
+ K DV+S + ++ GK P F +S L + + ++ +E P+ P
Sbjct: 185 EVLSKKGHSFEVDVWSIGCIMYTLLVGKPP--FETSCLKE-TYLRIKKNEYSIPKHINP- 240
Query: 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661
V LI M L P +RPT+ + F+ Y
Sbjct: 241 --VAASLIQKM------LQTDPTARPTINELLNDEFFTSGY 273
>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|F Chain F, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|H Chain H, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1IAS|A Chain A, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|B Chain B, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|C Chain C, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|D Chain D, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|E Chain E, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|3FAA|A Chain A, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|B Chain B, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|C Chain C, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|D Chain D, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|E Chain E, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3KCF|A Chain A, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|B Chain B, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|C Chain C, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|D Chain D, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|E Chain E, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|2X7O|A Chain A, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|B Chain B, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|C Chain C, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|D Chain D, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|E Chain E, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
Length = 342
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 106/256 (41%), Gaps = 78/256 (30%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFF--AEIEALTKIRHRNIVKF 486
IG GR G V+R + +E +AVK F+S +++ +F AEI +RH NI+ F
Sbjct: 50 IGKGRFGEVWRGKWRGEE-VAVKIFSS-------REERSWFREAEIYQTVMLRHENILGF 101
Query: 487 --------------YGFCSHARHSILIYEYLKR------GSLATNLSNDAAAEEL----- 521
+ + H L ++YL R G + LS + L
Sbjct: 102 IAADNKDNGTWTQLWLVSDYHEHGSL-FDYLNRYTVTVEGMIKLALSTASGLAHLHMEIV 160
Query: 522 -----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA------LVGTYRYV 564
D+ SKN+L+ ++D G+A ++ DS+ + VGT RY+
Sbjct: 161 GTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA--VRHDSATDTIDIAPNHRVGTKRYM 218
Query: 565 APDYR------------KKCDVYSFRVLALEV-----IKGKHPRGFVS--SILPS-PSVI 604
AP+ K+ D+Y+ ++ E+ I G H + ++PS PSV
Sbjct: 219 APEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVE 278
Query: 605 NMR---LDEMLDPRLP 617
MR ++ L P +P
Sbjct: 279 EMRKVVCEQKLRPNIP 294
>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
pdb|3PXK|B Chain B, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
Length = 282
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 111/265 (41%), Gaps = 52/265 (19%)
Query: 428 CIGSGRHGSVYRAELPSKE--FLAVK-KFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
CIG G+ G V++ S E LAV K SD + +++F E + + H +IV
Sbjct: 20 CIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSV--REKFLQEALTMRQFDHPHIV 77
Query: 485 KFYG------------FCS--HARHSILIYEY-LKRGSL---ATNLSNDAAAEE------ 520
K G C+ R + + +Y L SL A LS A E
Sbjct: 78 KLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVH 137
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAPD------YRKKC 572
DI+++NVL+ + DFG++++++ DS+ + A G +++AP+ +
Sbjct: 138 RDIAARNVLVSSNDCVKLGDFGLSRYME-DSTYYKASKGKLPIKWMAPESINFRRFTSAS 196
Query: 573 DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD--PRLPPPSPDVQGKLISI 630
DV+ F V E++ + + P V N + ++ RLP P P+ L S+
Sbjct: 197 DVWMFGVCMWEIL--------MHGVKPFQGVKNNDVIGRIENGERLPMP-PNCPPTLYSL 247
Query: 631 MEVAFSCLDVSPESRPTMQTITQQL 655
M C P RP + QL
Sbjct: 248 MT---KCWAYDPSRRPRFTELKAQL 269
>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4987655 And Mgamp-Pnp
pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4858061 And Mgatp
Length = 307
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 112/271 (41%), Gaps = 53/271 (19%)
Query: 421 NDFDAKYCIGSGRHGSVYR-AELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
+DF+ +G+G G V++ + PS +A K + + + A + + E++ L +
Sbjct: 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHECN 62
Query: 480 HRNIVKFYG-FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL----------------- 521
IV FYG F S SI + E++ GSL L E
Sbjct: 63 SPYIVGFYGAFYSDGEISICM-EHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLR 121
Query: 522 --------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
D+ N+L++ + + DFG++ L +N + VGT Y++P+
Sbjct: 122 EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN--SFVGTRSYMSPERLQGTH 179
Query: 568 YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVIN-----MRLDEMLDPRLPPPSPD 622
Y + D++S + +E+ G++P +P P M + E+LD + P P
Sbjct: 180 YSVQSDIWSMGLSLVEMAVGRYP-------IPPPDAKEDSRPPMAIFELLDYIVNEPPPK 232
Query: 623 VQGKLISIMEVAF--SCLDVSPESRPTMQTI 651
+ + S+ F CL +P R ++ +
Sbjct: 233 LPSGVFSLEFQDFVNKCLIKNPAERADLKQL 263
>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|2OWB|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|3FC2|A Chain A, Plk1 In Complex With Bi6727
Length = 335
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 86/227 (37%), Gaps = 42/227 (18%)
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------- 520
EI + H+++V F+GF ++ E +R SL A E
Sbjct: 91 EISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQI 150
Query: 521 --------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP 566
D+ N+ L+ + + + DFG+A ++ D L GT Y+AP
Sbjct: 151 VLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAP 210
Query: 567 DYRKK------CDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620
+ K DV+S + ++ GK P F +S L + + ++ +E P+ P
Sbjct: 211 EVLSKKGHSFEVDVWSIGCIMYTLLVGKPP--FETSCLKE-TYLRIKKNEYSIPKHINP- 266
Query: 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
V LI M L P +RPT+ + F+ Y P
Sbjct: 267 --VAASLIQKM------LQTDPTARPTINELLNDEFFTSGYIPARLP 305
>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical
Protein Kinase C-Iota
Length = 364
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 491 SHARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAK-FLKP 549
HAR Y SLA N ++ D+ NVLLD E ++D+G+ K L+P
Sbjct: 121 EHARF------YSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 174
Query: 550 DSSNWSALVGTYRYVAP------DYRKKCDVYSFRVLALEVIKGKHPRGFVSS 596
+ S GT Y+AP DY D ++ VL E++ G+ P V S
Sbjct: 175 GDTT-SXFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGS 226
>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A
Benzolactam-Derived Inhibitor
Length = 333
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 86/227 (37%), Gaps = 42/227 (18%)
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------- 520
EI + H+++V F+GF ++ E +R SL A E
Sbjct: 89 EISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQI 148
Query: 521 --------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP 566
D+ N+ L+ + + + DFG+A ++ D L GT Y+AP
Sbjct: 149 VLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAP 208
Query: 567 DYRKK------CDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620
+ K DV+S + ++ GK P F +S L + + ++ +E P+ P
Sbjct: 209 EVLSKKGHSFEVDVWSIGCIMYTLLVGKPP--FETSCLKE-TYLRIKKNEYSIPKHINP- 264
Query: 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
V LI M L P +RPT+ + F+ Y P
Sbjct: 265 --VAASLIQKM------LQTDPTARPTINELLNDEFFTSGYIPARLP 303
>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542
Length = 309
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 119/294 (40%), Gaps = 79/294 (26%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFF--AEIEALTKIRHRNIVKF 486
IG GR G V+R + +E +AVK F+S +++ +F AEI +RH NI+ F
Sbjct: 17 IGKGRFGEVWRGKWRGEE-VAVKIFSSR-------EERSWFREAEIYQTVMLRHENILGF 68
Query: 487 --------------YGFCSHARHSILIYEYLKR------GSLATNLSNDAAAEEL----- 521
+ + H L ++YL R G + LS + L
Sbjct: 69 IAADNKDNGTWTQLWLVSDYHEHGSL-FDYLNRYTVTVEGMIKLALSTASGLAHLHMEIV 127
Query: 522 -----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA------LVGTYRYV 564
D+ SKN+L+ ++D G+A ++ DS+ + VGT RY+
Sbjct: 128 GTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA--VRHDSATDTIDIAPNHRVGTKRYM 185
Query: 565 APDYR------------KKCDVYSFRVLALEV-----IKGKHPRGFV--SSILPS-PSVI 604
AP+ K+ D+Y+ ++ E+ I G H + ++PS PSV
Sbjct: 186 APEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVE 245
Query: 605 NMR---LDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
MR ++ L P +P + L + ++ C + +R T I + L
Sbjct: 246 EMRKVVCEQKLRPNIPNRWQSCEA-LRVMAKIMRECWYANGAARLTALRIKKTL 298
>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|B Chain B, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 315
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 86/227 (37%), Gaps = 42/227 (18%)
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------- 520
EI + H+++V F+GF ++ E +R SL A E
Sbjct: 71 EISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQI 130
Query: 521 --------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP 566
D+ N+ L+ + + + DFG+A ++ D L GT Y+AP
Sbjct: 131 VLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAP 190
Query: 567 DYRKK------CDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620
+ K DV+S + ++ GK P F +S L + + ++ +E P+ P
Sbjct: 191 EVLSKKGHSFEVDVWSIGCIMYTLLVGKPP--FETSCLKE-TYLRIKKNEYSIPKHINP- 246
Query: 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
V LI M L P +RPT+ + F+ Y P
Sbjct: 247 --VAASLIQKM------LQTDPTARPTINELLNDEFFTSGYIPARLP 285
>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3-
Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine
pdb|2WOU|A Chain A, Alk5 In Complex With
4-((4-((2,6-Dimethyl-3-Pyridyl)oxy)-2-
Pyridyl)amino)benzenesulfonamide
Length = 306
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 119/294 (40%), Gaps = 79/294 (26%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFF--AEIEALTKIRHRNIVKF 486
IG GR G V+R + +E +AVK F+S +++ +F AEI +RH NI+ F
Sbjct: 14 IGKGRFGEVWRGKWRGEE-VAVKIFSSR-------EERSWFREAEIYQTVMLRHENILGF 65
Query: 487 --------------YGFCSHARHSILIYEYLKR------GSLATNLSNDAAAEEL----- 521
+ + H L ++YL R G + LS + L
Sbjct: 66 IAADNKDNGTWTQLWLVSDYHEHGSL-FDYLNRYTVTVEGMIKLALSTASGLAHLHMEIV 124
Query: 522 -----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA------LVGTYRYV 564
D+ SKN+L+ ++D G+A ++ DS+ + VGT RY+
Sbjct: 125 GTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA--VRHDSATDTIDIAPNHRVGTKRYM 182
Query: 565 APDYR------------KKCDVYSFRVLALEV-----IKGKHPRGFV--SSILPS-PSVI 604
AP+ K+ D+Y+ ++ E+ I G H + ++PS PSV
Sbjct: 183 APEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVE 242
Query: 605 NMR---LDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
MR ++ L P +P + L + ++ C + +R T I + L
Sbjct: 243 EMRKVVCEQKLRPNIPNRWQSCEA-LRVMAKIMRECWYANGAARLTALRIKKTL 295
>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
pdb|2JKO|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 109/268 (40%), Gaps = 58/268 (21%)
Query: 428 CIGSGRHGSVYRAELPSKE----FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
CIG G+ G V++ S E +A+K + SD + +++F E + + H +I
Sbjct: 17 CIGEGQFGDVHQGIYMSPENPAMAVAIKTCKN-CTSDSV--REKFLQEALTMRQFDHPHI 73
Query: 484 VKFYG------------FCSHAR--------------HSILIYEYLKRGSLATNLSNDAA 517
VK G C+ S+++Y Y +LA S
Sbjct: 74 VKLIGVITENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFV 133
Query: 518 AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAPD------YR 569
DI+++NVL+ + DFG++++++ DS+ + A G +++AP+ +
Sbjct: 134 HR--DIAARNVLVSATDCVKLGDFGLSRYME-DSTYYKASKGKLPIKWMAPESINFRRFT 190
Query: 570 KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD--PRLPPPSPDVQGKL 627
DV+ F V E++ + + P V N + ++ RLP P P+ L
Sbjct: 191 SASDVWMFGVCMWEIL--------MHGVKPFQGVKNNDVIGRIENGERLPMP-PNCPPTL 241
Query: 628 ISIMEVAFSCLDVSPESRPTMQTITQQL 655
S+M C P RP + QL
Sbjct: 242 YSLMT---KCWAYDPSRRPRFTELKAQL 266
>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2ETM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2IJM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
pdb|2IJM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
Length = 281
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 111/265 (41%), Gaps = 52/265 (19%)
Query: 428 CIGSGRHGSVYRAELPSKE--FLAVK-KFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
CIG G+ G V++ S E LAV K SD + +++F E + + H +IV
Sbjct: 19 CIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSV--REKFLQEALTMRQFDHPHIV 76
Query: 485 KFYG------------FCS--HARHSILIYEY-LKRGSL---ATNLSNDAAAEE------ 520
K G C+ R + + +Y L SL A LS A E
Sbjct: 77 KLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVH 136
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAPD------YRKKC 572
DI+++NVL+ + DFG++++++ DS+ + A G +++AP+ +
Sbjct: 137 RDIAARNVLVSSNDCVKLGDFGLSRYME-DSTYYKASKGKLPIKWMAPESINFRRFTSAS 195
Query: 573 DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD--PRLPPPSPDVQGKLISI 630
DV+ F V E++ + + P V N + ++ RLP P P+ L S+
Sbjct: 196 DVWMFGVCMWEIL--------MHGVKPFQGVKNNDVIGRIENGERLPMP-PNCPPTLYSL 246
Query: 631 MEVAFSCLDVSPESRPTMQTITQQL 655
M C P RP + QL
Sbjct: 247 MT---KCWAYDPSRRPRFTELKAQL 268
>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C-kit Tyrosine Kinase
Length = 313
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 115/286 (40%), Gaps = 77/286 (26%)
Query: 429 IGSGRHGSVYRA------ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHR 481
+G+G G V A + + +AVK PS + +++ +E++ L+ + H
Sbjct: 31 LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLK---PSAHLTEREALMSELKVLSYLGNHM 87
Query: 482 NIVKFYGFCSHARHSILIYEYL-----------KRGSLATNLSNDAAAEEL--------- 521
NIV G C+ +++I EY KR S + ++ A E+
Sbjct: 88 NIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDL 147
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++N+LL + DFG+A+ +K DS+ + G
Sbjct: 148 LSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSN--YVVKG 205
Query: 560 TYR----YVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV-INMRL 608
R ++AP+ Y + DV+S+ + E+ F P P + ++ +
Sbjct: 206 NARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL--------FSLGSSPYPGMPVDSKF 257
Query: 609 DEMLDPRLPPPSPD-VQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
+M+ SP+ ++ IM+ +C D P RPT + I Q
Sbjct: 258 YKMIKEGFRMLSPEHAPAEMYDIMK---TCWDADPLKRPTFKQIVQ 300
>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And
Kinase Domains Of Focal Adhesion Kinase.
pdb|2JKQ|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 111/265 (41%), Gaps = 52/265 (19%)
Query: 428 CIGSGRHGSVYRAELPSKE--FLAVK-KFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
CIG G+ G V++ S E LAV K SD + +++F E + + H +IV
Sbjct: 17 CIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSV--REKFLQEALTMRQFDHPHIV 74
Query: 485 KFYG------------FCS--HARHSILIYEY-LKRGSL---ATNLSNDAAAEE------ 520
K G C+ R + + +Y L SL A LS A E
Sbjct: 75 KLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVH 134
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAPD------YRKKC 572
DI+++NVL+ + DFG++++++ DS+ + A G +++AP+ +
Sbjct: 135 RDIAARNVLVSSNDCVKLGDFGLSRYME-DSTYYKASKGKLPIKWMAPESINFRRFTSAS 193
Query: 573 DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD--PRLPPPSPDVQGKLISI 630
DV+ F V E++ + + P V N + ++ RLP P P+ L S+
Sbjct: 194 DVWMFGVCMWEIL--------MHGVKPFQGVKNNDVIGRIENGERLPMP-PNCPPTLYSL 244
Query: 631 MEVAFSCLDVSPESRPTMQTITQQL 655
M C P RP + QL
Sbjct: 245 MT---KCWAYDPSRRPRFTELKAQL 266
>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex
pdb|1PKG|B Chain B, Structure Of A C-kit Kinase Product Complex
Length = 329
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 115/286 (40%), Gaps = 77/286 (26%)
Query: 429 IGSGRHGSVYRA------ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHR 481
+G+G G V A + + +AVK PS + +++ +E++ L+ + H
Sbjct: 47 LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLK---PSAHLTEREALMSELKVLSYLGNHM 103
Query: 482 NIVKFYGFCSHARHSILIYEYL-----------KRGSLATNLSNDAAAEEL--------- 521
NIV G C+ +++I EY KR S + ++ A E+
Sbjct: 104 NIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDL 163
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++N+LL + DFG+A+ +K DS+ + G
Sbjct: 164 LSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSN--YVVKG 221
Query: 560 TYR----YVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV-INMRL 608
R ++AP+ Y + DV+S+ + E+ F P P + ++ +
Sbjct: 222 NARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL--------FSLGSSPYPGMPVDSKF 273
Query: 609 DEMLDPRLPPPSPD-VQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
+M+ SP+ ++ IM+ +C D P RPT + I Q
Sbjct: 274 YKMIKEGFRMLSPEHAPAEMYDIMK---TCWDADPLKRPTFKQIVQ 316
>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
pdb|2I0E|B Chain B, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
Length = 353
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVY 575
D+ NV+LD E ++DFG+ K D GT Y+AP+ Y K D +
Sbjct: 146 DLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKXFCGTPDYIAPEIIAYQPYGKSVDWW 205
Query: 576 SFRVLALEVIKGKHP 590
+F VL E++ G+ P
Sbjct: 206 AFGVLLYEMLAGQAP 220
>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
Length = 382
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 112/286 (39%), Gaps = 74/286 (25%)
Query: 429 IGSGRHGSVYRAEL-------PSK-EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P++ +AVK S ++D +E+E + I +
Sbjct: 77 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSD---LISEMEMMKMIGK 133
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSL------------------ATNLSNDAAAEEL 521
H+NI+ G C+ +I EY +G+L + N ++++L
Sbjct: 134 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 193
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ ++ ++DFG+A+ + G
Sbjct: 194 VSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNG 253
Query: 560 T--YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEM 611
+++AP+ Y + DV+SF VL E+ F P P V L ++
Sbjct: 254 RLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI--------FTLGGSPYPGVPVEELFKL 305
Query: 612 LDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L R+ PS + +L +M C P RPT + + + L
Sbjct: 306 LKEGHRMDKPS-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 347
>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXP|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 318
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 104/250 (41%), Gaps = 49/250 (19%)
Query: 444 SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL--IYE 501
+ E +AVK + + K+ EI+ L + H +I+K+ G C A + L + E
Sbjct: 59 TGEMVAVKALKADAGPQHRSGWKQ---EIDILRTLYHEHIIKYKGCCEDAGAASLQLVME 115
Query: 502 YLKRGSLATNLSNDAA--------AEEL---------------DISSKNVLLDLEHKAHV 538
Y+ GSL L + A+++ D++++NVLLD + +
Sbjct: 116 YVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKI 175
Query: 539 SDFGIAKFLKPDSSNWSALV---GTYRYVAPDYRKK------CDVYSFRVLALEVI---- 585
DFG+AK + + + AP+ K+ DV+SF V E++
Sbjct: 176 GDFGLAKAVPEGHEXYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCD 235
Query: 586 -KGKHPRGFVSSI-LPSPSVINMRLDEMLD--PRLPPPSPDVQGKLISIMEVAFSCLDVS 641
P F+ I + + +RL E+L+ RLP P ++ +M+ +C +
Sbjct: 236 SSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPD-KCPAEVYHLMK---NCWETE 291
Query: 642 PESRPTMQTI 651
RPT + +
Sbjct: 292 ASFRPTFENL 301
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVY 575
D+ NV+LD E ++DFG+ K D GT Y+AP+ Y K D +
Sbjct: 467 DLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKXFCGTPDYIAPEIIAYQPYGKSVDWW 526
Query: 576 SFRVLALEVIKGKHP 590
+F VL E++ G+ P
Sbjct: 527 AFGVLLYEMLAGQAP 541
>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human
Tgf- Beta Type I Receptor
pdb|3GXL|A Chain A, Alk-5 Kinase Complex With Gw857175
pdb|3HMM|A Chain A, Structure Of Alk5 + Gw855857
Length = 303
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 119/294 (40%), Gaps = 79/294 (26%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFF--AEIEALTKIRHRNIVKF 486
IG GR G V+R + +E +AVK F+S +++ +F AEI +RH NI+ F
Sbjct: 11 IGKGRFGEVWRGKWRGEE-VAVKIFSSR-------EERSWFREAEIYQTVMLRHENILGF 62
Query: 487 --------------YGFCSHARHSILIYEYLKR------GSLATNLSNDAAAEEL----- 521
+ + H L ++YL R G + LS + L
Sbjct: 63 IAADNKDNGTWTQLWLVSDYHEHGSL-FDYLNRYTVTVEGMIKLALSTASGLAHLHMEIV 121
Query: 522 -----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA------LVGTYRYV 564
D+ SKN+L+ ++D G+A ++ DS+ + VGT RY+
Sbjct: 122 GTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA--VRHDSATDTIDIAPNHRVGTKRYM 179
Query: 565 APDYR------------KKCDVYSFRVLALEV-----IKGKHPRGFV--SSILPS-PSVI 604
AP+ K+ D+Y+ ++ E+ I G H + ++PS PSV
Sbjct: 180 APEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVE 239
Query: 605 NMR---LDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
MR ++ L P +P + L + ++ C + +R T I + L
Sbjct: 240 EMRKVVCEQKLRPNIPNRWQSCEA-LRVMAKIMRECWYANGAARLTALRIKKTL 292
>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C- Kit Tyrosine Kinase
Length = 331
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 115/286 (40%), Gaps = 77/286 (26%)
Query: 429 IGSGRHGSVYRA------ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHR 481
+G+G G V A + + +AVK PS + +++ +E++ L+ + H
Sbjct: 49 LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLK---PSAHLTEREALMSELKVLSYLGNHM 105
Query: 482 NIVKFYGFCSHARHSILIYEYL-----------KRGSLATNLSNDAAAEEL--------- 521
NIV G C+ +++I EY KR S + ++ A E+
Sbjct: 106 NIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDL 165
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++N+LL + DFG+A+ +K DS+ + G
Sbjct: 166 LSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSN--YVVKG 223
Query: 560 TYR----YVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV-INMRL 608
R ++AP+ Y + DV+S+ + E+ F P P + ++ +
Sbjct: 224 NARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL--------FSLGSSPYPGMPVDSKF 275
Query: 609 DEMLDPRLPPPSPD-VQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
+M+ SP+ ++ IM+ +C D P RPT + I Q
Sbjct: 276 YKMIKEGFRMLSPEHAPAEMYDIMK---TCWDADPLKRPTFKQIVQ 318
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 119/315 (37%), Gaps = 71/315 (22%)
Query: 394 SPQNSQGLLSILSFKGKFDYVEIIRAINDFDAKY-------CIGSGRHGSVYRAELPSKE 446
P+ + LLS SF K I + ++D + IG GR G VY +
Sbjct: 1 GPEMNLSLLSARSFPRKASQTSIF--LQEWDIPFEQLEIGELIGKGRFGQVYHGRWHGE- 57
Query: 447 FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRG 506
+A++ + + D K F E+ A + RH N+V F G C H + I L +G
Sbjct: 58 -VAIRLID--IERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPH-LAIITSLCKG 113
Query: 507 SLATNLSNDAA-----------AEEL---------------DISSKNVLLDLEHKAHVSD 540
++ DA A+E+ D+ SKNV D K ++D
Sbjct: 114 RTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-NGKVVITD 172
Query: 541 FG---IAKFLKPD--------SSNWSALVG--TYRYVAPD-------YRKKCDVYSFRVL 580
FG I+ L+ + W + R ++PD + K DV++ +
Sbjct: 173 FGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTI 232
Query: 581 ALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDV 640
E+ H R + P+ ++I ++ + P L S GK IS ++ C
Sbjct: 233 WYEL----HAREWPFKTQPAEAII-WQMGTGMKPNL---SQIGMGKEIS--DILLFCWAF 282
Query: 641 SPESRPTMQTITQQL 655
E RPT + L
Sbjct: 283 EQEERPTFTKLMDML 297
>pdb|4EUT|A Chain A, Structure Of Bx-795 Complexed With Unphosphorylated Human
Tbk1 Kinase- Uld Domain
pdb|4EUT|B Chain B, Structure Of Bx-795 Complexed With Unphosphorylated Human
Tbk1 Kinase- Uld Domain
Length = 396
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 74/181 (40%), Gaps = 44/181 (24%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSP---LPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G G +V+R + + A+K FN+ P D +EF E L K+ H+NIV
Sbjct: 17 LGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVD--VQMREF----EVLKKLNHKNIV 70
Query: 485 KFYGFCSH--ARHSILIYEYLKRGSLATNLSNDAAA-----EELDISSKNVLLDLEHKAH 537
K + RH +LI E+ GSL T L + A E I ++V+ + H
Sbjct: 71 KLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRE 130
Query: 538 --------------------------VSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKK 571
++DFG A+ L+ D + +L GT Y+ PD ++
Sbjct: 131 NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELE-DDEQFVSLYGTEEYLHPDMYER 189
Query: 572 C 572
Sbjct: 190 A 190
>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A
Methanesulfonamide Diaminopyrimidine Inhibitor
Length = 276
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 111/265 (41%), Gaps = 52/265 (19%)
Query: 428 CIGSGRHGSVYRAELPSKE--FLAVK-KFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
CIG G+ G V++ S E LAV K SD + +++F E + + H +IV
Sbjct: 14 CIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSV--REKFLQEALTMRQFDHPHIV 71
Query: 485 KFYG------------FCS--HARHSILIYEY-LKRGSL---ATNLSNDAAAEE------ 520
K G C+ R + + +Y L SL A LS A E
Sbjct: 72 KLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVH 131
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAPD------YRKKC 572
DI+++NVL+ + DFG++++++ DS+ + A G +++AP+ +
Sbjct: 132 RDIAARNVLVSSNDCVKLGDFGLSRYME-DSTYYKASKGKLPIKWMAPESINFRRFTSAS 190
Query: 573 DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD--PRLPPPSPDVQGKLISI 630
DV+ F V E++ + + P V N + ++ RLP P P+ L S+
Sbjct: 191 DVWMFGVCMWEIL--------MHGVKPFQGVKNNDVIGRIENGERLPMP-PNCPPTLYSL 241
Query: 631 MEVAFSCLDVSPESRPTMQTITQQL 655
M C P RP + QL
Sbjct: 242 MT---KCWAYDPSRRPRFTELKAQL 263
>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib
Length = 336
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 115/286 (40%), Gaps = 77/286 (26%)
Query: 429 IGSGRHGSVYRA------ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHR 481
+G+G G V A + + +AVK PS + +++ +E++ L+ + H
Sbjct: 54 LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLK---PSAHLTEREALMSELKVLSYLGNHM 110
Query: 482 NIVKFYGFCSHARHSILIYEYL-----------KRGSLATNLSNDAAAEEL--------- 521
NIV G C+ +++I EY KR S + ++ A E+
Sbjct: 111 NIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDL 170
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++N+LL + DFG+A+ +K DS+ + G
Sbjct: 171 LSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSN--YVVKG 228
Query: 560 TYR----YVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV-INMRL 608
R ++AP+ Y + DV+S+ + E+ F P P + ++ +
Sbjct: 229 NARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL--------FSLGSSPYPGMPVDSKF 280
Query: 609 DEMLDPRLPPPSPD-VQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
+M+ SP+ ++ IM+ +C D P RPT + I Q
Sbjct: 281 YKMIKEGFRMLSPEHAPAEMYDIMK---TCWDADPLKRPTFKQIVQ 323
>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FG9|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FGB|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I Apo Form
Length = 320
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 85/215 (39%), Gaps = 40/215 (18%)
Query: 410 KFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEF 468
++ E IR I DF + +G+G V AE +++ +A+K + +
Sbjct: 9 RWKQAEDIRDIYDF--RDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSMEN- 65
Query: 469 FAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL-------------------- 508
EI L KI+H NIV H LI + + G L
Sbjct: 66 --EIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIF 123
Query: 509 ----ATNLSNDAAAEELDISSKNVL---LDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561
A +D D+ +N+L LD + K +SDFG++K P S S GT
Sbjct: 124 QVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDP-GSVLSTACGTP 182
Query: 562 RYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
YVAP+ Y K D +S V+A ++ G P
Sbjct: 183 GYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP 217
>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha
(Mrck Alpha)
Length = 437
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 97/259 (37%), Gaps = 43/259 (16%)
Query: 373 CISVIAYVPII---WDQANREGQRSPQNSQGLLSILS-FKGKFDYVEIIRAINDFDAKYC 428
C SV + I+ +D+ N R +N L F K + + R DF+
Sbjct: 24 CFSVETLLDILICLYDECNNSPLRREKNILEYLEWAKPFTSKVKQMRLHR--EDFEILKV 81
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IG G G V +L + + + K + + A+ F E + L + I +
Sbjct: 82 IGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHY 141
Query: 489 FCSHARHSILIYEYLKRGSLATNLS--NDAAAEEL-----------------------DI 523
+ L+ +Y G L T LS D EE+ DI
Sbjct: 142 AFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDI 201
Query: 524 SSKNVLLDLEHKAHVSDFG-IAKFLKPDSSNWSALVGTYRYVAPD-----------YRKK 571
N+L+D+ ++DFG K ++ + S VGT Y++P+ Y +
Sbjct: 202 KPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPE 261
Query: 572 CDVYSFRVLALEVIKGKHP 590
CD +S V E++ G+ P
Sbjct: 262 CDWWSLGVCMYEMLYGETP 280
>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp
Site Inhibitor
Length = 301
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 119/294 (40%), Gaps = 79/294 (26%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFF--AEIEALTKIRHRNIVKF 486
IG GR G V+R + +E +AVK F+S +++ +F AEI +RH NI+ F
Sbjct: 12 IGKGRFGEVWRGKWRGEE-VAVKIFSSR-------EERSWFREAEIYQTVMLRHENILGF 63
Query: 487 --------------YGFCSHARHSILIYEYLKR------GSLATNLSNDAAAEEL----- 521
+ + H L ++YL R G + LS + L
Sbjct: 64 IAADNKDNGTWTQLWLVSDYHEHGSL-FDYLNRYTVTVEGMIKLALSTASGLAHLHMEIV 122
Query: 522 -----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA------LVGTYRYV 564
D+ SKN+L+ ++D G+A ++ DS+ + VGT RY+
Sbjct: 123 GTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA--VRHDSATDTIDIAPNHRVGTKRYM 180
Query: 565 APDYR------------KKCDVYSFRVLALEV-----IKGKHPRGFV--SSILPS-PSVI 604
AP+ K+ D+Y+ ++ E+ I G H + ++PS PSV
Sbjct: 181 APEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVE 240
Query: 605 NMR---LDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
MR ++ L P +P + L + ++ C + +R T I + L
Sbjct: 241 EMRKVVCEQKLRPNIPNRWQSCEA-LRVMAKIMRECWYANGAARLTALRIKKTL 293
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 36/193 (18%)
Query: 471 EIEALTKIRHRNIVKFYGFC-----------SHARHSILIYEYLKRGSLATNLSNDAAAE 519
E + ++++ H VK Y FC S+A++ L+ K GS + AE
Sbjct: 87 ERDVMSRLDHPFFVKLY-FCFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAE 145
Query: 520 --------------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRY 563
D+ +N+LL+ + ++DFG AK L P+S A VGT +Y
Sbjct: 146 IVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQY 205
Query: 564 VAPDYR------KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLP 617
V+P+ K D+++ + +++ G P + L +I + D +
Sbjct: 206 VSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYD--FPEKFF 263
Query: 618 PPSPDVQGKLISI 630
P + D+ KL+ +
Sbjct: 264 PKARDLVEKLLVL 276
>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
pdb|4FG8|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
Length = 315
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 85/215 (39%), Gaps = 40/215 (18%)
Query: 410 KFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEF 468
++ E IR I DF + +G+G V AE +++ +A+K + +
Sbjct: 9 RWKQAEDIRDIYDF--RDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSMEN- 65
Query: 469 FAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL-------------------- 508
EI L KI+H NIV H LI + + G L
Sbjct: 66 --EIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIF 123
Query: 509 ----ATNLSNDAAAEELDISSKNVL---LDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561
A +D D+ +N+L LD + K +SDFG++K P S S GT
Sbjct: 124 QVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDP-GSVLSTACGTP 182
Query: 562 RYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
YVAP+ Y K D +S V+A ++ G P
Sbjct: 183 GYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP 217
>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1
pdb|3QFV|B Chain B, Mrck Beta In Complex With Tpca-1
Length = 415
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 79/207 (38%), Gaps = 37/207 (17%)
Query: 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
DF+ IG G G V ++ + E + K + + A+ F E + L
Sbjct: 74 EDFEIIKVIGRGAFGEVAVVKMKNTERIYAMKILNKWEMLKRAETACFREERDVLVNGDC 133
Query: 481 RNIVKFYGFCSHARHSILIYEYLKRGSLATNLS--NDAAAEEL----------------- 521
+ I + H L+ +Y G L T LS D E++
Sbjct: 134 QWITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDKLPEDMARFYIGEMVLAIDSIHQ 193
Query: 522 ------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL-VGTYRYVAPD------- 567
DI NVLLD+ ++DFG + D + S++ VGT Y++P+
Sbjct: 194 LHYVHRDIKPDNVLLDVNGHIRLADFGSCLKMNDDGTVQSSVAVGTPDYISPEILQAMED 253
Query: 568 ----YRKKCDVYSFRVLALEVIKGKHP 590
Y +CD +S V E++ G+ P
Sbjct: 254 GMGKYGPECDWWSLGVCMYEMLYGETP 280
>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.28 A Resolution
pdb|4G34|A Chain A, Crystal Structure Of Gsk6924 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.70 A Resolution
Length = 299
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/227 (19%), Positives = 86/227 (37%), Gaps = 63/227 (27%)
Query: 418 RAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFFAEIEALT 476
R + DF+ C+G G G V+ A+ + A+K+ LP+ ++A +K E++AL
Sbjct: 2 RYLTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIR--LPNRELAREK-VMREVKALA 58
Query: 477 KIRHRNIVKFY--------------------------------------GFCS--HARHS 496
K+ H IV+++ G C+ S
Sbjct: 59 KLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERS 118
Query: 497 ILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556
+ ++ +L+ A + D+ N+ ++ V DFG+ + D +
Sbjct: 119 VCLHIFLQIAE-AVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTV 177
Query: 557 L------------VGTYRYVAPD------YRKKCDVYSFRVLALEVI 585
L VGT Y++P+ Y K D++S ++ E++
Sbjct: 178 LTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELL 224
>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 112/286 (39%), Gaps = 74/286 (25%)
Query: 429 IGSGRHGSVYRAEL-------PSK-EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P++ +AVK S ++D +E+E + I +
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSD---LISEMEMMKMIGK 92
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSL------------------ATNLSNDAAAEEL 521
H+NI+ G C+ +I EY +G+L + N ++++L
Sbjct: 93 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEFSFNPSHNPEEQLSSKDL 152
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ ++ ++DFG+A+ + G
Sbjct: 153 VSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDXXKKTTNG 212
Query: 560 T--YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEM 611
+++AP+ Y + DV+SF VL E+ F P P V L ++
Sbjct: 213 RLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI--------FTLGGSPYPGVPVEELFKL 264
Query: 612 LDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L R+ PS + +L +M C P RPT + + + L
Sbjct: 265 LKEGHRMDKPS-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 306
>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 112/266 (42%), Gaps = 54/266 (20%)
Query: 428 CIGSGRHGSVYRAELPSKE----FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
CIG G+ G V++ S E +A+K + SD + +++F E + + H +I
Sbjct: 17 CIGEGQFGDVHQGIYMSPENPAMAVAIKTCKN-CTSDSV--REKFLQEALTMRQFDHPHI 73
Query: 484 VKFYG------------FCS--HARHSILIYEY-LKRGSL---ATNLSNDAAAEE----- 520
VK G C+ R + + +Y L SL A LS A E
Sbjct: 74 VKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFV 133
Query: 521 -LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAPD------YRKK 571
DI+++NVL+ + DFG++++++ DS+ + A G +++AP+ +
Sbjct: 134 HRDIAARNVLVSSNDCVKLGDFGLSRYME-DSTYYKASKGKLPIKWMAPESINFRRFTSA 192
Query: 572 CDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD--PRLPPPSPDVQGKLIS 629
DV+ F V E++ + + P V N + ++ RLP P P+ L S
Sbjct: 193 SDVWMFGVCMWEIL--------MHGVKPFQGVKNNDVIGRIENGERLPMP-PNCPPTLYS 243
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+M C P RP + QL
Sbjct: 244 LMT---KCWAYDPSRRPRFTELKAQL 266
>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2F2U|B Chain B, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2H9V|A Chain A, Structural Basis For Induced-Fit Binding Of Rho-Kinase To
The Inhibitor Y27632
Length = 402
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 82/221 (37%), Gaps = 45/221 (20%)
Query: 413 YVEIIRAI-------NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQ 465
Y +I++ I D+D IG G G V + + + K S + +D
Sbjct: 60 YEKIVKKIRGLQMKAEDYDVVKVIGRGAFGEVQLVRHKASQKVYAMKLLSKFEMIKRSDS 119
Query: 466 KEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL---- 521
F+ E + + +V+ + ++ ++ EY+ G L +SN E+
Sbjct: 120 AFFWEERDIMAFANSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNLMSNYDVPEKWAKFY 179
Query: 522 -------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW---SALVG 559
D+ N+LLD ++DFG +K D + VG
Sbjct: 180 TAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTC--MKMDETGMVHCDTAVG 237
Query: 560 TYRYVAPD----------YRKKCDVYSFRVLALEVIKGKHP 590
T Y++P+ Y ++CD +S V E++ G P
Sbjct: 238 TPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTP 278
>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil
pdb|3TKU|B Chain B, Mrck Beta In Complex With Fasudil
Length = 433
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 79/207 (38%), Gaps = 37/207 (17%)
Query: 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
DF+ IG G G V ++ + E + K + + A+ F E + L
Sbjct: 90 EDFEIIKVIGRGAFGEVAVVKMKNTERIYAMKILNKWEMLKRAETACFREERDVLVNGDC 149
Query: 481 RNIVKFYGFCSHARHSILIYEYLKRGSLATNLS--NDAAAEEL----------------- 521
+ I + H L+ +Y G L T LS D E++
Sbjct: 150 QWITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDKLPEDMARFYIGEMVLAIDSIHQ 209
Query: 522 ------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL-VGTYRYVAPD------- 567
DI NVLLD+ ++DFG + D + S++ VGT Y++P+
Sbjct: 210 LHYVHRDIKPDNVLLDVNGHIRLADFGSCLKMNDDGTVQSSVAVGTPDYISPEILQAMED 269
Query: 568 ----YRKKCDVYSFRVLALEVIKGKHP 590
Y +CD +S V E++ G+ P
Sbjct: 270 GMGKYGPECDWWSLGVCMYEMLYGETP 296
>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6
pdb|3NAY|B Chain B, Pdk1 In Complex With Inhibitor Mp6
Length = 311
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAPDYR------KKCD 573
D+ +N+LL+ + ++DFG AK L P+S A VGT +YV+P+ K D
Sbjct: 154 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 213
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630
+++ + +++ G P + L +I + D + P + D+ KL+ +
Sbjct: 214 LWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYD--FPEKFFPKARDLVEKLLVL 268
>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7
Length = 311
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAPDYR------KKCD 573
D+ +N+LL+ + ++DFG AK L P+S A VGT +YV+P+ K D
Sbjct: 154 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSD 213
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630
+++ + +++ G P + L +I + D + P + D+ KL+ +
Sbjct: 214 LWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYD--FPEKFFPKARDLVEKLLVL 268
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 71/191 (37%), Gaps = 34/191 (17%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V++ + + +A+KKF D +K EI L +++H N+V
Sbjct: 11 IGEGSYGVVFKCRNRDTGQIVAIKKFLES--EDDPVIKKIALREIRMLKQLKHPNLVNLL 68
Query: 488 GFCSHARHSILIYEYLKRGSL------------------------ATNLSNDAAAEELDI 523
R L++EY L A N + D+
Sbjct: 69 EVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHNCIHRDV 128
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKCDVYS 576
+N+L+ + DFG A+ L S + V T Y +P+ Y DV++
Sbjct: 129 KPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWA 188
Query: 577 FRVLALEVIKG 587
+ E++ G
Sbjct: 189 IGCVFAELLSG 199
>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain
Length = 310
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDS--SNWSALVGTYRYVAPDYR------KKCD 573
D+ +N+LL+ + ++DFG AK L P+S + +A VGT +YV+P+ K D
Sbjct: 155 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANAFVGTAQYVSPELLTEKSACKSSD 214
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
+++ + +++ G P + L +I + D + P + D+ KL+
Sbjct: 215 LWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYD--FPEKFFPKARDLVEKLL 267
>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase
Domain Of The Human Epidermal Growth Factor Receptor 3
(Her3)
pdb|3KEX|B Chain B, Crystal Structure Of The Catalytically Inactive Kinase
Domain Of The Human Epidermal Growth Factor Receptor 3
(Her3)
Length = 325
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 108/274 (39%), Gaps = 68/274 (24%)
Query: 428 CIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQ--KEFFAEIE----ALTKIRH 480
+GSG G+V++ +P E + + P+ I D+ ++ F + A+ + H
Sbjct: 20 VLGSGVFGTVHKGVWIPEGESIKI-----PVCIKVIEDKSGRQSFQAVTDHMLAIGSLDH 74
Query: 481 RNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAA--------------------EE 520
+IV+ G C + L+ +YL GSL ++ A EE
Sbjct: 75 AHIVRLLGLCPGSSLQ-LVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEE 133
Query: 521 -----LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPD------ 567
+++++NVLL + V+DFG+A L PD +S +++A +
Sbjct: 134 HGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGK 193
Query: 568 YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLD-----PRLPPPSP 621
Y + DV+S+ V E++ G P +RL E+ D RL P
Sbjct: 194 YTHQSDVWSYGVTVWELMTFGAEPYA------------GLRLAEVPDLLEKGERLAQP-- 239
Query: 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
Q I + V C + RPT + + +
Sbjct: 240 --QICTIDVYMVMVKCWMIDENIRPTFKELANEF 271
>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains.
pdb|2J0K|B Chain B, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 133/332 (40%), Gaps = 82/332 (24%)
Query: 388 NREGQRS----PQ----NSQGLLS-ILSFKGKFDYVEIIR--------AINDFDAKY--- 427
+EG+R+ P+ QG+ S +S DY EII + D++ +
Sbjct: 333 QKEGERALPSIPKLANNEKQGVRSHTVSVSETDDYAEIIDEEDTYTMPSTRDYEIQRERI 392
Query: 428 ----CIGSGRHGSVYRAELPSKE----FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
CIG G+ G V++ S E +A+K + SD + +++F E + +
Sbjct: 393 ELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKN-CTSDSV--REKFLQEALTMRQFD 449
Query: 480 HRNIVKFYG------------FCSHAR--------------HSILIYEYLKRGSLATNLS 513
H +IVK G C+ S+++Y Y +LA S
Sbjct: 450 HPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLES 509
Query: 514 NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAPD---- 567
DI+++NVL+ + DFG++++++ DS+ + A G +++AP+
Sbjct: 510 KRFVHR--DIAARNVLVSATDCVKLGDFGLSRYME-DSTYYKASKGKLPIKWMAPESINF 566
Query: 568 --YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD--PRLPPPSPDV 623
+ DV+ F V E++ + + P V N + ++ RLP P P+
Sbjct: 567 RRFTSASDVWMFGVCMWEIL--------MHGVKPFQGVKNNDVIGRIENGERLPMP-PNC 617
Query: 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L S+M C P RP + QL
Sbjct: 618 PPTLYSLMT---KCWAYDPSRRPRFTELKAQL 646
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 121/304 (39%), Gaps = 73/304 (24%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
L NL +++ +N LT + P + NL LV + + NQ P + NL++L L LF
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLF-- 115
Query: 62 NLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNC 121
NN T L+N
Sbjct: 116 ---------------------NNQITD--------------------------IDPLKNL 128
Query: 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNN 181
NL R+ L N + IS G+ +L L S N L L++S N
Sbjct: 129 TNLNRLELSSNTISD-ISALSGLT-SLQQLSFSSNQVTD--LKPLANLTTLERLDISSNK 184
Query: 182 ITR-SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL--IGHLPSEI 238
++ S+ ++ NL +L ++ N+ + I G L +L +L L GNQL IG L
Sbjct: 185 VSDISVLAKLTNLESL----IATNNQISDI-TPLGILTNLDELSLNGNQLKDIGTL---- 235
Query: 239 GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELS 298
SLT L L+L+ N+ S+L P L L KL L L Q P L L L+ LEL+
Sbjct: 236 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 291
Query: 299 HNFL 302
N L
Sbjct: 292 ENQL 295
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 22/89 (24%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLP----------------- 44
LTNL +L L +N ++ L P L L +L LG NQ P
Sbjct: 238 LTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 295
Query: 45 ---SSVGNLSSLRYLFLFENNLSGSIPPS 70
S + NL +L YL L+ NN+S P S
Sbjct: 296 EDISPISNLKNLTYLTLYFNNISDISPVS 324
>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
pdb|3VW6|B Chain B, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
Length = 269
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 79/202 (39%), Gaps = 41/202 (20%)
Query: 426 KYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+ +G G +G VY +L ++ +A+K+ +P + EI ++H+NIV
Sbjct: 13 RVVLGKGTYGIVYAGRDLSNQVRIAIKE----IPERDSRYSQPLHEEIALHKHLKHKNIV 68
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS---------------------------NDAA 517
++ G S + E + GSL+ L +D
Sbjct: 69 QYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQ 128
Query: 518 AEELDISSKNVLLDLEHKA-HVSDFGIAKFLKPDSSNWSALVGTYRYVAPD--------Y 568
DI NVL++ +SDFG +K L + GT +Y+AP+ Y
Sbjct: 129 IVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGY 188
Query: 569 RKKCDVYSFRVLALEVIKGKHP 590
K D++S +E+ GK P
Sbjct: 189 GKAADIWSLGCTIIEMATGKPP 210
>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
pdb|4DFY|E Chain E, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
Length = 371
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 167 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 214
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
+ W+ L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 215 ATWT-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 258
>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex
With Amp-Pnp
pdb|3LMG|B Chain B, Crystal Structure Of The Erbb3 Kinase Domain In Complex
With Amp-Pnp
Length = 344
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 108/274 (39%), Gaps = 68/274 (24%)
Query: 428 CIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQ--KEFFAEIE----ALTKIRH 480
+GSG G+V++ +P E + + P+ I D+ ++ F + A+ + H
Sbjct: 38 VLGSGVFGTVHKGVWIPEGESIKI-----PVCIKVIEDKSGRQSFQAVTDHMLAIGSLDH 92
Query: 481 RNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAA--------------------EE 520
+IV+ G C + L+ +YL GSL ++ A EE
Sbjct: 93 AHIVRLLGLCPGSSLQ-LVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEE 151
Query: 521 -----LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPD------ 567
+++++NVLL + V+DFG+A L PD +S +++A +
Sbjct: 152 HGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGK 211
Query: 568 YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLD-----PRLPPPSP 621
Y + DV+S+ V E++ G P +RL E+ D RL P
Sbjct: 212 YTHQSDVWSYGVTVWELMTFGAEPYA------------GLRLAEVPDLLEKGERLAQP-- 257
Query: 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
Q I + V C + RPT + + +
Sbjct: 258 --QICTIDVYMVMVKCWMIDENIRPTFKELANEF 289
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 204 NHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI-GSLTKLEFLNLSTNRFSSLIPESL 262
N I P F L +L +L L NQL G LP + SLT+L L+L TN+ + L
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF 108
Query: 263 GNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIP 307
L+ L L + + + ELP+ + +L L+ L L N L + IP
Sbjct: 109 DRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQL-KSIP 151
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWN-LKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFL 58
+L NL+EL+L N L G +P ++ L L L LG NQ LPS+V L L+ LF+
Sbjct: 62 SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFM 119
Query: 59 FENNLSGSIPPSVGNLM-LTVLALENNHF 86
N L+ +P + L LT LAL+ N
Sbjct: 120 CCNKLT-ELPRGIERLTHLTHLALDQNQL 147
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFEN 61
TN + L+L DN +T L P +L +L +L LG NQ G+LP V +L+ L L L N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98
Query: 62 NLS 64
L+
Sbjct: 99 QLT 101
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 33/158 (20%)
Query: 467 EFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL----- 521
+ E+ L + H NI+K Y F R+ L+ E K G L + + E+
Sbjct: 82 KLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHRMKFNEVDAAVI 141
Query: 522 -------------------DISSKNVLLDLEHKA---HVSDFGIAKFLKPDSSNWSALVG 559
D+ +N+LL+ + K + DFG++ + + +G
Sbjct: 142 IKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFE-NQKKMKERLG 200
Query: 560 TYRYVAPD-----YRKKCDVYSFRVLALEVIKGKHPRG 592
T Y+AP+ Y +KCDV+S V+ ++ G P G
Sbjct: 201 TAYYIAPEVLRKKYDEKCDVWSIGVILFILLAGYPPFG 238
>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|B Chain B, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|C Chain C, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
Length = 360
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVY 575
D+ NV+LD E ++DFG+ K D GT Y+AP+ Y K D +
Sbjct: 145 DLKLDNVMLDSEGHIKIADFGMCKEHMMDGVTTREFCGTPDYIAPEIIAYQPYGKSVDWW 204
Query: 576 SFRVLALEVIKGKHP 590
++ VL E++ G+ P
Sbjct: 205 AYGVLLYEMLAGQPP 219
>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human
Pdk1 Complex 2
Length = 311
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAPDY------RKKCD 573
D+ +N+LL+ + ++DFG AK L P+S A VGT +YV+P+ K D
Sbjct: 157 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSASKSSD 216
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
+++ + +++ G P + L +I + D + P + D+ KL+
Sbjct: 217 LWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYD--FPEKFFPKARDLVEKLL 269
>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
pdb|2CLQ|B Chain B, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
Length = 295
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 84/216 (38%), Gaps = 41/216 (18%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFA 470
D +E ++ + +G G +G VY +L ++ +A+K+ +P +
Sbjct: 13 DLLEYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKE----IPERDSRYSQPLHE 68
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLS----------------- 513
EI ++H+NIV++ G S + E + GSL+ L
Sbjct: 69 EIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYT 128
Query: 514 ----------NDAAAEELDISSKNVLLDLEHKA-HVSDFGIAKFLKPDSSNWSALVGTYR 562
+D DI NVL++ +SDFG +K L + GT +
Sbjct: 129 KQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQ 188
Query: 563 YVAPD--------YRKKCDVYSFRVLALEVIKGKHP 590
Y+AP+ Y K D++S +E+ GK P
Sbjct: 189 YMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPP 224
>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead
Compound
Length = 292
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAPDYR------KKCD 573
D+ +N+LL+ + ++DFG AK L P+S A VGT +YV+P+ K D
Sbjct: 139 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 198
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630
+++ + +++ G P + L +I + D + P + D+ KL+ +
Sbjct: 199 LWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYD--FPEKFFPKARDLVEKLLVL 253
>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1
Reveals A Novel Autoinhibitory Conformation For A Dual
Kinase Protein
Length = 355
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 82/211 (38%), Gaps = 40/211 (18%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELPSK----EFLAVKKFNSPLPSDQIADQKEFFAEIEA 474
I +F+ +G+G +G V+ S + A+K + + E +
Sbjct: 52 GIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQV 111
Query: 475 LTKIRHRN--IVKFYGFCSHARHSILIYEYLKRGSLATNLSNDA---------------- 516
L IR + Y F + + LI +Y+ G L T+LS
Sbjct: 112 LEHIRQSPFLVTLHYAFQTETKLH-LILDYINGGELFTHLSQRERFTEHEVQIYVGEIVL 170
Query: 517 AAEEL--------DISSKNVLLDLEHKAHVSDFGIAK-FLKPDSSNWSALVGTYRYVAPD 567
A E L DI +N+LLD ++DFG++K F+ ++ GT Y+APD
Sbjct: 171 ALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPD 230
Query: 568 --------YRKKCDVYSFRVLALEVIKGKHP 590
+ K D +S VL E++ G P
Sbjct: 231 IVRGGDSGHDKAVDWWSLGVLMYELLTGASP 261
>pdb|4EUU|A Chain A, Structure Of Bx-795 Complexed With Human Tbk1 Kinase
Domain Phosphorylated On Ser172
pdb|4EUU|B Chain B, Structure Of Bx-795 Complexed With Human Tbk1 Kinase
Domain Phosphorylated On Ser172
Length = 319
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 73/181 (40%), Gaps = 44/181 (24%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSP---LPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G G +V+R + + A+K FN+ P D +EF E L K+ H+NIV
Sbjct: 17 LGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVD--VQMREF----EVLKKLNHKNIV 70
Query: 485 KFYGFCSH--ARHSILIYEYLKRGSLATNLSNDAAA-----EELDISSKNVLLDLEHKAH 537
K + RH +LI E+ GSL T L + A E I ++V+ + H
Sbjct: 71 KLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRE 130
Query: 538 --------------------------VSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKK 571
++DFG A+ L+ D + L GT Y+ PD ++
Sbjct: 131 NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELE-DDEQFVXLYGTEEYLHPDMYER 189
Query: 572 C 572
Sbjct: 190 A 190
>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|C Chain C, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|A Chain A, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|C Chain C, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 317
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 82/197 (41%), Gaps = 40/197 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+G+G + +VY+ + ++A+K+ L S++ EI + +++H NIV+ Y
Sbjct: 13 LGNGTYATVYKGLNKTTGVYVALKEVK--LDSEE-GTPSTAIREISLMKELKHENIVRLY 69
Query: 488 GFCSHARHSILIYEY----LKRGSLATNLSNDAAAEEL---------------------- 521
L++E+ LK+ + + N EL
Sbjct: 70 DVIHTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKI 129
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKK 571
D+ +N+L++ + + DFG+A+ + +S+ V T Y APD Y
Sbjct: 130 LHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTS 189
Query: 572 CDVYSFRVLALEVIKGK 588
D++S + E+I GK
Sbjct: 190 IDIWSCGCILAEMITGK 206
>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|B Chain B, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|C Chain C, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALO|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Ternary Complex With Amp-Pnp And P38 Peptide
pdb|3VUT|A Chain A, Crystal Structures Of Non-Phosphorylated Map2k4
pdb|3VUT|B Chain B, Crystal Structures Of Non-Phosphorylated Map2k4
Length = 327
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 45/203 (22%)
Query: 429 IGSGRHGSVYR-AELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK---------- 477
IG G +GSV + PS + +AVK+ S + + QK+ +++ + +
Sbjct: 30 IGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKE---QKQLLMDLDVVMRSSDCPYIVQF 86
Query: 478 ---------------IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL- 521
+ + KFY + ++ E L + +LAT + + E L
Sbjct: 87 YGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLK 146
Query: 522 ----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD---------- 567
DI N+LLD + DFGI+ L DS + G Y+AP+
Sbjct: 147 IIHRDIKPSNILLDRSGNIKLCDFGISGQLV-DSIAKTRDAGCRPYMAPERIDPSASRQG 205
Query: 568 YRKKCDVYSFRVLALEVIKGKHP 590
Y + DV+S + E+ G+ P
Sbjct: 206 YDVRSDVWSLGITLYELATGRFP 228
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 89/250 (35%), Gaps = 74/250 (29%)
Query: 466 KEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN----------- 514
++ +E L ++ H +++K YG CS +LI EY K GSL L
Sbjct: 71 RDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGS 130
Query: 515 --------------------DAAAEELDIS-----------------SKNVLLDLEHKAH 537
D + IS ++N+L+ K
Sbjct: 131 GGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMK 190
Query: 538 VSDFGIAKFLKPDSS-----------NWSALVGTYRYVAPDYRKKCDVYSFRVLALEVIK 586
+SDFG+++ + + S W A+ + ++ Y + DV+SF VL E++
Sbjct: 191 ISDFGLSRDVYEEDSXVKRSQGRIPVKWMAIESLFDHI---YTTQSDVWSFGVLLWEIVT 247
Query: 587 -GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESR 645
G + P P + RL +L PD + + + C P+ R
Sbjct: 248 LGGN---------PYPGIPPERLFNLLKTGHRMERPDNCSE--EMYRLMLQCWKQEPDKR 296
Query: 646 PTMQTITQQL 655
P I++ L
Sbjct: 297 PVFADISKDL 306
>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAPDYR------KKCD 573
D+ +N+LL+ + ++DFG AK L P+S A VGT +YV+P+ K D
Sbjct: 155 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 214
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
+++ + +++ G P + L +I + D + P + D+ KL+
Sbjct: 215 LWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYD--FPEKFFPKARDLVEKLL 267
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 171 KLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL 230
KL+ LN+ N + +L+ L L+ N + F L L KL L GNQL
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119
Query: 231 IGHLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELP----KE 285
LPS + LTKL+ L L+TN+ S+ + L L L LS Q +Q +P
Sbjct: 120 -KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDR 177
Query: 286 LGKL 289
LGKL
Sbjct: 178 LGKL 181
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 3/145 (2%)
Query: 136 GTISEA-FGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEI-GNL 193
T+S+A F LT+L++ N A + +L TL ++ NN S+PL + +L
Sbjct: 48 ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA-NNQLASLPLGVFDHL 106
Query: 194 STLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNR 253
+ L++ L N + F +L L +L L NQL LT L+ L+LSTN+
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 254 FSSLIPESLGNLLKLHYLDLSKYQF 278
S+ + L KL + L QF
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
+LT L L L +N L L +L L KL LGGNQ + SLPS V L+ L+ L L
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLN 139
Query: 60 ENNLSGSIPPSVGNLM--LTVLALENNHFTGNLRHNICRNGALERVIVGGNHF 110
N L SIP + + L L+L N R G L+ + + GN F
Sbjct: 140 TNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 202 SLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPES 261
SL+ + IP + KL+ L+ L + LTKL +LNL N+ +L
Sbjct: 25 SLDSVPSGIPADTEKLD------LQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78
Query: 262 LGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQI 310
+L +L L L+ Q L QL +L L N L + +PS +
Sbjct: 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGV 126
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 89/250 (35%), Gaps = 74/250 (29%)
Query: 466 KEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN----------- 514
++ +E L ++ H +++K YG CS +LI EY K GSL L
Sbjct: 71 RDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGS 130
Query: 515 --------------------DAAAEELDIS-----------------SKNVLLDLEHKAH 537
D + IS ++N+L+ K
Sbjct: 131 GGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMSLVHRDLAARNILVAEGRKMK 190
Query: 538 VSDFGIAKFLKPDSS-----------NWSALVGTYRYVAPDYRKKCDVYSFRVLALEVIK 586
+SDFG+++ + + S W A+ + ++ Y + DV+SF VL E++
Sbjct: 191 ISDFGLSRDVYEEDSXVKRSQGRIPVKWMAIESLFDHI---YTTQSDVWSFGVLLWEIVT 247
Query: 587 -GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESR 645
G + P P + RL +L PD + + + C P+ R
Sbjct: 248 LGGN---------PYPGIPPERLFNLLKTGHRMERPDNCSE--EMYRLMLQCWKQEPDKR 296
Query: 646 PTMQTITQQL 655
P I++ L
Sbjct: 297 PVFADISKDL 306
>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex
With A Staurosporine Analogue
Length = 290
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 101/253 (39%), Gaps = 52/253 (20%)
Query: 447 FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFC-SHARHSI-LIYEYLK 504
+AVK+ P DQ Q++F EI+ L + IVK+ G R + L+ EYL
Sbjct: 38 LVAVKQLQHSGP-DQ---QRDFQREIQILKALHSDFIVKYRGVSYGPGRPELRLVMEYLP 93
Query: 505 RGSLATNLSNDAA---AEEL----------------------DISSKNVLLDLEHKAHVS 539
G L L A A L D++++N+L++ E ++
Sbjct: 94 SGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIA 153
Query: 540 DFGIAKFLKPDSSNWSAL---VGTYRYVAPD------YRKKCDVYSFRVLALEVI----K 586
DFG+AK L D + AP+ + ++ DV+SF V+ E+ K
Sbjct: 154 DFGLAKLLPLDKDXXVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDK 213
Query: 587 GKHPRGFVSSILPS----PSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSP 642
P ++ P++ + RLP P P ++ +M++ C SP
Sbjct: 214 SCSPSAEFLRMMGCERDVPALCRLLELLEEGQRLPAP-PACPAEVHELMKL---CWAPSP 269
Query: 643 ESRPTMQTITQQL 655
+ RP+ + QL
Sbjct: 270 QDRPSFSALGPQL 282
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 10/134 (7%)
Query: 178 SMNNITRSI-PLEI------GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL 230
S NI S PL+I N S L DLS I K + L+ L+ LIL GN +
Sbjct: 28 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 87
Query: 231 IGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQ--ELPKELGK 288
P LT LE L + +SL +G L+ L L+++ + FI +LP
Sbjct: 88 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA-HNFIHSCKLPAYFSN 146
Query: 289 LVQLSELELSHNFL 302
L L ++LS+N++
Sbjct: 147 LTNLVHVDLSYNYI 160
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 99 ALERVIVGGNHFR-GPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNN 157
+L + + GN F+ + N NL + L + F L L++S NN
Sbjct: 444 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 503
Query: 158 FFGEIASNWGKCPKLSTLNVSMNNITRS 185
+S++ + LSTL+ S N I S
Sbjct: 504 LLFLDSSHYNQLYSLSTLDCSFNRIETS 531
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 89/250 (35%), Gaps = 74/250 (29%)
Query: 466 KEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN----------- 514
++ +E L ++ H +++K YG CS +LI EY K GSL L
Sbjct: 71 RDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGS 130
Query: 515 --------------------DAAAEELDIS-----------------SKNVLLDLEHKAH 537
D + IS ++N+L+ K
Sbjct: 131 GGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMK 190
Query: 538 VSDFGIAKFLKPDSS-----------NWSALVGTYRYVAPDYRKKCDVYSFRVLALEVIK 586
+SDFG+++ + + S W A+ + ++ Y + DV+SF VL E++
Sbjct: 191 ISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHI---YTTQSDVWSFGVLLWEIVT 247
Query: 587 -GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESR 645
G + P P + RL +L PD + + + C P+ R
Sbjct: 248 LGGN---------PYPGIPPERLFNLLKTGHRMERPDNCSE--EMYRLMLQCWKQEPDKR 296
Query: 646 PTMQTITQQL 655
P I++ L
Sbjct: 297 PVFADISKDL 306
>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ly333531
pdb|1UU7|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-2
pdb|1UU8|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-1
pdb|1OKY|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Staurosporine
pdb|1OKZ|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ucn-01
Length = 310
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAPDYR------KKCD 573
D+ +N+LL+ + ++DFG AK L P+S A VGT +YV+P+ K D
Sbjct: 155 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 214
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630
+++ + +++ G P + L +I + D + P + D+ KL+ +
Sbjct: 215 LWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYD--FPEKFFPKARDLVEKLLVL 269
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 10/134 (7%)
Query: 178 SMNNITRSI-PLEI------GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL 230
S NI S PL+I N S L DLS I K + L+ L+ LIL GN +
Sbjct: 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92
Query: 231 IGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQ--ELPKELGK 288
P LT LE L + +SL +G L+ L L+++ + FI +LP
Sbjct: 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA-HNFIHSCKLPAYFSN 151
Query: 289 LVQLSELELSHNFL 302
L L ++LS+N++
Sbjct: 152 LTNLVHVDLSYNYI 165
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 99 ALERVIVGGNHFR-GPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNN 157
+L + + GN F+ + N NL + L + F L L++S NN
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508
Query: 158 FFGEIASNWGKCPKLSTLNVSMNNITRS 185
+S++ + LSTL+ S N I S
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIETS 536
>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAPDYR------KKCD 573
D+ +N+LL+ + ++DFG AK L P+S A VGT +YV+P+ K D
Sbjct: 155 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 214
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630
+++ + +++ G P + L +I + D + P + D+ KL+ +
Sbjct: 215 LWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYD--FPEKFFPKARDLVEKLLVL 269
>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through
Fragment-Based Lead Discovery
pdb|3RWQ|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAPDYR------KKCD 573
D+ +N+LL+ + ++DFG AK L P+S A VGT +YV+P+ K D
Sbjct: 157 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 216
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
+++ + +++ G P + L +I + D + P + D+ KL+
Sbjct: 217 LWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYD--FPEKFFPKARDLVEKLL 269
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 171 KLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL 230
KL+ LN+ N + +L+ L L+ N + F L L KL L GNQL
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119
Query: 231 IGHLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELP----KE 285
LPS + LTKL+ L L+TN+ S+ + L L L LS Q +Q +P
Sbjct: 120 -KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDR 177
Query: 286 LGKL 289
LGKL
Sbjct: 178 LGKL 181
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 3/145 (2%)
Query: 136 GTISEA-FGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEI-GNL 193
T+S+A F LT+L++ N A + +L TL ++ NN S+PL + +L
Sbjct: 48 ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA-NNQLASLPLGVFDHL 106
Query: 194 STLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNR 253
+ L++ L N + F +L L +L L NQL LT L+ L+LSTN+
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 254 FSSLIPESLGNLLKLHYLDLSKYQF 278
S+ + L KL + L QF
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
+LT L L L +N L L +L L KL LGGNQ + SLPS V L+ L+ L L
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLN 139
Query: 60 ENNLSGSIPPSVGNLM--LTVLALENNHFTGNLRHNICRNGALERVIVGGNHF 110
N L SIP + + L L+L N R G L+ + + GN F
Sbjct: 140 TNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 202 SLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPES 261
SL+ + IP + KL+ L+ L + LTKL +LNL N+ +L
Sbjct: 25 SLDSVPSGIPADTEKLD------LQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78
Query: 262 LGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQI 310
+L +L L L+ Q L QL +L L N L + +PS +
Sbjct: 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGV 126
>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAPDYR------KKCD 573
D+ +N+LL+ + ++DFG AK L P+S A VGT +YV+P+ K D
Sbjct: 157 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 216
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630
+++ + +++ G P + L +I + D + P + D+ KL+ +
Sbjct: 217 LWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYD--FPEKFFPKARDLVEKLLVL 271
>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 133/332 (40%), Gaps = 82/332 (24%)
Query: 388 NREGQRS----PQ----NSQGLLS-ILSFKGKFDYVEIIR--------AINDFDAKY--- 427
+EG+R+ P+ QG+ S +S DY EII + D++ +
Sbjct: 333 QKEGERALPSIPKLANNEKQGVRSHTVSVSETDDYAEIIDEEDTYTMPSTRDYEIQRERI 392
Query: 428 ----CIGSGRHGSVYRAELPSKE----FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
CIG G+ G V++ S E +A+K + SD + +++F E + +
Sbjct: 393 ELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKN-CTSDSV--REKFLQEALTMRQFD 449
Query: 480 HRNIVKFYG------------FCSHAR--------------HSILIYEYLKRGSLATNLS 513
H +IVK G C+ S+++Y Y +LA S
Sbjct: 450 HPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLES 509
Query: 514 NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAPD---- 567
DI+++NVL+ + DFG++++++ DS+ + A G +++AP+
Sbjct: 510 KRFVHR--DIAARNVLVSSNDCVKLGDFGLSRYME-DSTYYKASKGKLPIKWMAPESINF 566
Query: 568 --YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD--PRLPPPSPDV 623
+ DV+ F V E++ + + P V N + ++ RLP P P+
Sbjct: 567 RRFTSASDVWMFGVCMWEIL--------MHGVKPFQGVKNNDVIGRIENGERLPMP-PNC 617
Query: 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L S+M C P RP + QL
Sbjct: 618 PPTLYSLMT---KCWAYDPSRRPRFTELKAQL 646
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 112/286 (39%), Gaps = 74/286 (25%)
Query: 429 IGSGRHGSVYRAEL-------PSK-EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P++ +AVK S ++D +E+E + I +
Sbjct: 21 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSD---LISEMEMMKMIGK 77
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSL------------------ATNLSNDAAAEEL 521
H+NI+ G C+ +I EY +G+L + N ++++L
Sbjct: 78 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDL 137
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ ++ ++DFG+A+ + G
Sbjct: 138 VSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNG 197
Query: 560 T--YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEM 611
+++AP+ Y + DV+SF VL E+ F P P V L ++
Sbjct: 198 RLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI--------FTLGGSPYPGVPVEELFKL 249
Query: 612 LDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L R+ PS + +L +M C P RPT + + + L
Sbjct: 250 LKEGHRMDKPS-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 291
>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3JS2|B Chain B, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3KY2|A Chain A, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
pdb|3KY2|B Chain B, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
Length = 317
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 112/286 (39%), Gaps = 74/286 (25%)
Query: 429 IGSGRHGSVYRAEL-------PSK-EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P++ +AVK S ++D +E+E + I +
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSD---LISEMEMMKMIGK 92
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSL------------------ATNLSNDAAAEEL 521
H+NI+ G C+ +I EY +G+L + N ++++L
Sbjct: 93 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 152
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ ++ ++DFG+A+ + G
Sbjct: 153 VSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNG 212
Query: 560 T--YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEM 611
+++AP+ Y + DV+SF VL E+ F P P V L ++
Sbjct: 213 RLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI--------FTLGGSPYPGVPVEELFKL 264
Query: 612 LDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L R+ PS + +L +M C P RPT + + + L
Sbjct: 265 LKEGHRMDKPS-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 306
>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In
Complex With Compound 9
Length = 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAPDYR------KKCD 573
D+ +N+LL+ + ++DFG AK L P+S A VGT +YV+P+ K D
Sbjct: 157 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 216
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630
+++ + +++ G P + L +I + D + P + D+ KL+ +
Sbjct: 217 LWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYD--FPEKFFPKARDLVEKLLVL 271
>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i
pdb|3QCQ|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-(3-
Amino-1h-Indazol-6-Yl)-N4-Ethyl-2,4-Pyrimidinediamine
pdb|3QCS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-[2-
Amino-6-(4-Morpholinyl)-4-Pyrimidinyl]-1h-Indazol-3-
Amine
pdb|3QCX|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-{2-
Amino-6-[(3r)-3-Methyl-4-Morpholinyl]-4-Pyrimidinyl}-1h-
Indazol-3- Amine
pdb|3QCY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 4-[2-
Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-N-
Phenyl-2- Morpholinecarboxamide
pdb|3QD0|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With (2r,5s)-
1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-6-
Methyl-N- Phenyl-3-Piperidinecarboxamide
pdb|3QD3|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1- Dimethylethyl
{(3r,6s)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-6-Methyl-3-Piperidinyl}carbamate
pdb|3QD4|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1-
Dimethylethyl{(3r,
5r)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-5-Methyl-3-Piperidinyl}carbamate
Length = 312
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAPDYR------KKCD 573
D+ +N+LL+ + ++DFG AK L P+S A VGT +YV+P+ K D
Sbjct: 158 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 217
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
+++ + +++ G P + L +I + D + P + D+ KL+
Sbjct: 218 LWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYD--FPEKFFPKARDLVEKLL 270
>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent
Kinase- 1 (Pdk-1)catalytic Domain Bound To A
Dibenzonaphthyridine Inhibitor
pdb|3ION|A Chain A, Pdk1 In Complex With Compound 8h
Length = 312
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAPDYR------KKCD 573
D+ +N+LL+ + ++DFG AK L P+S A VGT +YV+P+ K D
Sbjct: 158 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSD 217
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
+++ + +++ G P + L +I + D + P + D+ KL+
Sbjct: 218 LWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYD--FPEKFFPKARDLVEKLL 270
>pdb|1Z5M|A Chain A, Crystal Structure Of
N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)
Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2-
Dimethylpropanediamide Complexed With Human Pdk1
pdb|2PE0|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
5-Hydroxy-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-1,
3-Dihydro- Indol-2-One Complex
pdb|2PE1|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
{2-Oxo-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-2,
3-Dihydro-1h- Indol-5-Yl}-Urea {bx-517} Complex
pdb|2PE2|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
3-{5-[2-Oxo-5-Ureido-1,
2-Dihydro-Indol-(3z)-Ylidenemethyl]-1h-
Pyrrol-3-Yl}-N-(2-Piperidin-1-Yl-Ethyl)-Benzamide
Complex
Length = 286
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAPDYR------KKCD 573
D+ +N+LL+ + ++DFG AK L P+S A VGT +YV+P+ K D
Sbjct: 132 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 191
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630
+++ + +++ G P + L +I + D + P + D+ KL+ +
Sbjct: 192 LWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYD--FPEKFFPKARDLVEKLLVL 246
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 112/286 (39%), Gaps = 74/286 (25%)
Query: 429 IGSGRHGSVYRAEL-------PSK-EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P++ +AVK S ++D +E+E + I +
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSD---LISEMEMMKMIGK 92
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSL------------------ATNLSNDAAAEEL 521
H+NI+ G C+ +I EY +G+L + N ++++L
Sbjct: 93 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDL 152
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ ++ ++DFG+A+ + G
Sbjct: 153 VSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNG 212
Query: 560 T--YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEM 611
+++AP+ Y + DV+SF VL E+ F P P V L ++
Sbjct: 213 RLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI--------FTLGGSPYPGVPVEELFKL 264
Query: 612 LDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L R+ PS + +L +M C P RPT + + + L
Sbjct: 265 LKEGHRMDKPS-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 306
>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8
pdb|3NUU|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment11
pdb|3NUY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment17
Length = 286
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAPDYR------KKCD 573
D+ +N+LL+ + ++DFG AK L P+S A VGT +YV+P+ K D
Sbjct: 133 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 192
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630
+++ + +++ G P + L +I + D + P + D+ KL+ +
Sbjct: 193 LWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYD--FPEKFFPKARDLVEKLLVL 247
>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps171 Bound To The Pif-Pocket
pdb|4AW0|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps182 Bound To The Pif-Pocket
Length = 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAPDY------RKKCD 573
D+ +N+LL+ + ++DFG AK L P+S A VGT +YV+P+ K D
Sbjct: 157 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSAXKSSD 216
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
+++ + +++ G P + L +I + D + P + D+ KL+
Sbjct: 217 LWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEYD--FPEKFFPKARDLVEKLL 269
>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With
Staurosporine At 2a Resolution
Length = 345
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 35/210 (16%)
Query: 414 VEIIRAINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEI 472
++I I DF +G G G V+ AE + +F A+K + + D E
Sbjct: 10 LQIKLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVL--MDDDVECTMVE 67
Query: 473 EALTKIRHRNIVKFYGFCSHARHSILIY--EYLKRGSLATNL----------SNDAAAEE 520
+ + + + + FC+ L + EYL G L ++ + AAE
Sbjct: 68 KRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEI 127
Query: 521 L--------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP 566
+ D+ N+LLD + ++DFG+ K + + GT Y+AP
Sbjct: 128 ILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNXFCGTPDYIAP 187
Query: 567 D------YRKKCDVYSFRVLALEVIKGKHP 590
+ Y D +SF VL E++ G+ P
Sbjct: 188 EILLGQKYNHSVDWWSFGVLLYEMLIGQSP 217
>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
pdb|3RHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
Length = 306
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 112/286 (39%), Gaps = 74/286 (25%)
Query: 429 IGSGRHGSVYRAEL-------PSK-EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P++ +AVK S ++D +E+E + I +
Sbjct: 25 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSD---LISEMEMMKMIGK 81
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSL------------------ATNLSNDAAAEEL 521
H+NI+ G C+ +I EY +G+L + N ++++L
Sbjct: 82 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 141
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ ++ ++DFG+A+ + G
Sbjct: 142 VSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNG 201
Query: 560 T--YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEM 611
+++AP+ Y + DV+SF VL E+ F P P V L ++
Sbjct: 202 RLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI--------FTLGGSPYPGVPVEELFKL 253
Query: 612 LDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L R+ PS + +L +M C P RPT + + + L
Sbjct: 254 LKEGHRMDKPS-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 295
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 112/286 (39%), Gaps = 74/286 (25%)
Query: 429 IGSGRHGSVYRAEL-------PSK-EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P++ +AVK S ++D +E+E + I +
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSD---LISEMEMMKMIGK 92
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSL------------------ATNLSNDAAAEEL 521
H+NI+ G C+ +I EY +G+L + N ++++L
Sbjct: 93 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQAREPPGLEYSYNPSHNPEEQLSSKDL 152
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ ++ ++DFG+A+ + G
Sbjct: 153 VSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNG 212
Query: 560 T--YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEM 611
+++AP+ Y + DV+SF VL E+ F P P V L ++
Sbjct: 213 RLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI--------FTLGGSPYPGVPVEELFKL 264
Query: 612 LDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L R+ PS + +L +M C P RPT + + + L
Sbjct: 265 LKEGHRMDKPS-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 306
>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F63|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F64|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F64|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F65|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
pdb|4F65|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
Length = 309
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 112/286 (39%), Gaps = 74/286 (25%)
Query: 429 IGSGRHGSVYRAEL-------PSK-EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P++ +AVK S ++D +E+E + I +
Sbjct: 28 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSD---LISEMEMMKMIGK 84
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSL------------------ATNLSNDAAAEEL 521
H+NI+ G C+ +I EY +G+L + N ++++L
Sbjct: 85 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 144
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ ++ ++DFG+A+ + G
Sbjct: 145 VSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNG 204
Query: 560 T--YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEM 611
+++AP+ Y + DV+SF VL E+ F P P V L ++
Sbjct: 205 RLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI--------FTLGGSPYPGVPVEELFKL 256
Query: 612 LDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L R+ PS + +L +M C P RPT + + + L
Sbjct: 257 LKEGHRMDKPS-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 298
>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
pdb|1H4L|B Chain B, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
Length = 292
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 34/194 (17%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G+V++A+ + E +A+K+ L D EI L +++H+NIV+ +
Sbjct: 10 IGEGTYGTVFKAKNRETHEIVALKRVR--LDDDDEGVPSSALREICLLKELKHKNIVRLH 67
Query: 488 GFCSHARHSILIYEY----LKR------GSLATNLSNDAAAEEL--------------DI 523
+ L++E+ LK+ G L + + L D+
Sbjct: 68 DVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDL 127
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKCDVYS 576
+N+L++ + ++DFG+A+ +SA V T Y PD Y D++S
Sbjct: 128 KPQNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWS 187
Query: 577 FRVLALEVIKGKHP 590
+ E+ P
Sbjct: 188 AGCIFAELANAARP 201
>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp
Length = 298
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 36/152 (23%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDS-------------SNWSAL--VGTYRYVAP 566
D++++N +LD V+DFG+A+ + W+AL + TYR+
Sbjct: 149 DLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTT- 207
Query: 567 DYRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS--PDV 623
K DV+SF VL E++ +G P + + + R RLP P PD
Sbjct: 208 ----KSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGR-------RLPQPEYCPD- 255
Query: 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
S+ +V C + P RPT + + ++
Sbjct: 256 -----SLYQVMQQCWEADPAVRPTFRVLVGEV 282
>pdb|2F7E|E Chain E, Pka Complexed With
(S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6-
Yl-Pyridin-3-Yloxymethyl-Etylamine
pdb|2F7X|E Chain E, Protein Kinase A Bound To
(s)-2-(1h-indol-3-yl)-1-[5-((e)-2-
Pyridin-4-yl-vinyl)-pyridin-3-yloxymethyl]-ethylamine
pdb|2F7Z|E Chain E, Protein Kinase A Bound To
(R)-1-(1h-Indol-3-Ylmethyl)-2-(2-
Pyridin-4-Yl-[1,7]naphtyridin-5-Yloxy)-Ehylamine
pdb|2OH0|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
pdb|2OJF|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
Length = 351
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 147 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 194
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W+ L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 195 RTWT-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The
Kinase Domain Of Focal Adhesion Kinase With A
Phosphorylated Activation Loop
Length = 276
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 108/268 (40%), Gaps = 58/268 (21%)
Query: 428 CIGSGRHGSVYRAELPSKE----FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
CIG G+ G V++ S E +A+K + SD + +++F E + + H +I
Sbjct: 17 CIGEGQFGDVHQGIYMSPENPAMAVAIKTCKN-CTSDSV--REKFLQEALTMRQFDHPHI 73
Query: 484 VKFYG------------FCSHAR--------------HSILIYEYLKRGSLATNLSNDAA 517
VK G C+ S+++Y Y +LA S
Sbjct: 74 VKLIGVITENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFV 133
Query: 518 AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAPD------YR 569
DI+++NVL+ + DFG++++++ DS+ A G +++AP+ +
Sbjct: 134 HR--DIAARNVLVSSNDCVKLGDFGLSRYME-DSTXXKASKGKLPIKWMAPESINFRRFT 190
Query: 570 KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD--PRLPPPSPDVQGKL 627
DV+ F V E++ + + P V N + ++ RLP P P+ L
Sbjct: 191 SASDVWMFGVCMWEIL--------MHGVKPFQGVKNNDVIGRIENGERLPMP-PNCPPTL 241
Query: 628 ISIMEVAFSCLDVSPESRPTMQTITQQL 655
S+M C P RP + QL
Sbjct: 242 YSLMT---KCWAYDPSRRPRFTELKAQL 266
>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGK|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1AGW|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|1AGW|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|2FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
pdb|2FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
Length = 310
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 112/286 (39%), Gaps = 74/286 (25%)
Query: 429 IGSGRHGSVYRAEL-------PSK-EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P++ +AVK S ++D +E+E + I +
Sbjct: 29 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSD---LISEMEMMKMIGK 85
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSL------------------ATNLSNDAAAEEL 521
H+NI+ G C+ +I EY +G+L + N ++++L
Sbjct: 86 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 145
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ ++ ++DFG+A+ + G
Sbjct: 146 VSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNG 205
Query: 560 T--YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEM 611
+++AP+ Y + DV+SF VL E+ F P P V L ++
Sbjct: 206 RLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI--------FTLGGSPYPGVPVEELFKL 257
Query: 612 LDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L R+ PS + +L +M C P RPT + + + L
Sbjct: 258 LKEGHRMDKPS-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 299
>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors
pdb|2UZU|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
pdb|2UZV|A Chain A, Pka Structures Of Indazole-pyridine Series Of Akt
Inhibitors
pdb|2UZW|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
Length = 336
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 132 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 179
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W+ L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 180 RTWT-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 223
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 86/215 (40%), Gaps = 39/215 (18%)
Query: 409 GKFDYVEIIRAINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKE 467
G DY E+++ ++ IG+G V A + + E +A+K + +D
Sbjct: 1 GPKDYDELLKY---YELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLG---SDLPR 54
Query: 468 FFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATN-LSNDAAAEE------ 520
EIEAL +RH++I + Y A ++ EY G L +S D +EE
Sbjct: 55 IKTEIEALKNLRHQHICQLYHVLETANKIFMVLEYCPGGELFDYIISQDRLSEEETRVVF 114
Query: 521 -----------------LDISSKNVLLDLEHKAHVSDFGI-AKFLKPDSSNWSALVGTYR 562
D+ +N+L D HK + DFG+ AK + G+
Sbjct: 115 RQIVSAVAYVHSQGYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGNKDYHLQTCCGSLA 174
Query: 563 YVAPDYRK-------KCDVYSFRVLALEVIKGKHP 590
Y AP+ + + DV+S +L ++ G P
Sbjct: 175 YAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLP 209
>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
pdb|2PZP|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 110/290 (37%), Gaps = 82/290 (28%)
Query: 429 IGSGRHGSVYRAEL-------PSKEF-LAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P + +AVK + ++D +E+E + I +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEEDLSD---LVSEMEMMKMIGK 99
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLS-------------NDAAAEEL----- 521
H+NI+ G C+ +I EY +G+L L N E++
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 159
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ + ++DFG+A+ D +N
Sbjct: 160 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLAR----DINNIDYYKK 215
Query: 560 T------YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR 607
T +++AP+ Y + DV+SF VL E+ F P P +
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI--------FTLGGSPYPGIPVEE 267
Query: 608 LDEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L ++L R+ P+ + +L +M C P RPT + + + L
Sbjct: 268 LFKLLKEGHRMDKPA-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 313
>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-3
Length = 286
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAPDYR------KKCD 573
D+ +N+LL+ + ++DFG AK L P+S A VGT +YV+P+ K D
Sbjct: 134 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 193
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630
+++ + +++ G P + L +I + D + P + D+ KL+ +
Sbjct: 194 LWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYD--FPEKFFPKARDLVEKLLVL 248
>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
pdb|3MA6|B Chain B, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
Length = 298
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 93/222 (41%), Gaps = 39/222 (17%)
Query: 405 LSFKGKFDYVEIIRAI--NDFDAKYCIGSGRHGSVY--RAELPSKEFLAVKKFNSPLPSD 460
L F+G +V+ AI + + + +G G G V + ++ +E AVK S
Sbjct: 14 LYFQGPGMFVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQE-CAVKVI-SKRQVK 71
Query: 461 QIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE 520
Q D++ E++ L ++ H NI+K Y F + L+ E G L + + E
Sbjct: 72 QKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSE 131
Query: 521 LDISS------------------------KNVLLDLEHK---AHVSDFGIAKFLKPDSSN 553
+D + +N+LL+ + K + DFG++ + S
Sbjct: 132 VDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEA-SKK 190
Query: 554 WSALVGTYRYVAPD-----YRKKCDVYSFRVLALEVIKGKHP 590
+GT Y+AP+ Y +KCDV+S V+ ++ G P
Sbjct: 191 MKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPP 232
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 24/179 (13%)
Query: 126 RISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRS 185
++ L+ N + S+AF L L ++DN A + + L TL V+ N + ++
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL-QA 99
Query: 186 IPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLE 245
+P+ + F +L +L +L L NQL P SLTKL
Sbjct: 100 LPIGV-----------------------FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136
Query: 246 FLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGR 304
+L+L N SL L L L L Q + KL +L L+L +N L R
Sbjct: 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195
>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ESM|B Chain B, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ETK|A Chain A, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETK|B Chain B, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETR|A Chain A, Crystal Structure Of Rock I Bound To Y-27632
pdb|2ETR|B Chain B, Crystal Structure Of Rock I Bound To Y-27632
pdb|3D9V|A Chain A, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3D9V|B Chain B, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3NCZ|A Chain A, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|B Chain B, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|C Chain C, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|D Chain D, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NDM|A Chain A, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|B Chain B, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|C Chain C, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|D Chain D, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
Length = 415
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 75/204 (36%), Gaps = 36/204 (17%)
Query: 422 DFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
D++ IG G G V S + K S + +D F+ E + +
Sbjct: 75 DYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSP 134
Query: 482 NIVK-FYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------- 521
+V+ FY F R+ ++ EY+ G L +SN E+
Sbjct: 135 WVVQLFYAF-QDDRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMG 193
Query: 522 ----DISSKNVLLDLEHKAHVSDFGIA-KFLKPDSSNWSALVGTYRYVAPD--------- 567
D+ N+LLD ++DFG K K VGT Y++P+
Sbjct: 194 FIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDG 253
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
Y ++CD +S V E++ G P
Sbjct: 254 YYGRECDWWSVGVFLYEMLVGDTP 277
>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|C Chain C, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 406
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 75/204 (36%), Gaps = 36/204 (17%)
Query: 422 DFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
D++ IG G G V S + K S + +D F+ E + +
Sbjct: 75 DYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSP 134
Query: 482 NIVK-FYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------- 521
+V+ FY F R+ ++ EY+ G L +SN E+
Sbjct: 135 WVVQLFYAF-QDDRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMG 193
Query: 522 ----DISSKNVLLDLEHKAHVSDFGIA-KFLKPDSSNWSALVGTYRYVAPD--------- 567
D+ N+LLD ++DFG K K VGT Y++P+
Sbjct: 194 FIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDG 253
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
Y ++CD +S V E++ G P
Sbjct: 254 YYGRECDWWSVGVFLYEMLVGDTP 277
>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated
Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2
Chain)
Length = 276
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 80/232 (34%), Gaps = 52/232 (22%)
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL--------- 521
EI+ L RH +I+K Y S ++ EY+ G L + EE+
Sbjct: 61 EIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQI 120
Query: 522 ---------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP 566
D+ +NVLLD A ++DFG++ + D G+ Y AP
Sbjct: 121 LSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMS-DGEFLRTSCGSPNYAAP 179
Query: 567 DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML---DPRLPPPSPDV 623
EVI G+ G I ++ L L D +P +
Sbjct: 180 ----------------EVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKI 223
Query: 624 QGKLI--------SIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
+G + S+ + L V P R T++ I + F SY P
Sbjct: 224 RGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQDLPSYLFP 275
>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
pdb|3QC4|B Chain B, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
Length = 314
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAPDYR------KKCD 573
D+ +N+LL+ + ++DFG AK L P+S A VGT +YV+P+ K D
Sbjct: 160 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 219
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLD 609
+++ + +++ G P + L +I + D
Sbjct: 220 LWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYD 255
>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1
Catalytic Domain
pdb|1UVR|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-8
Length = 289
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAPDYR------KKCD 573
D+ +N+LL+ + ++DFG AK L P+S A VGT +YV+P+ K D
Sbjct: 135 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 194
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630
+++ + +++ G P + L +I + D + P + D+ KL+ +
Sbjct: 195 LWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYD--FPEKFFPKARDLVEKLLVL 249
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 109/267 (40%), Gaps = 56/267 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFL----AVKKFNSPL-PSDQIADQKEFFAEIEALTKIRHRN 482
+GSG G+VY+ +P E + A+K N P + EF E + + H +
Sbjct: 46 LGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANV----EFMDEALIMASMDHPH 101
Query: 483 IVKFYGFCSHAR---------HSILI-YEYLKRGSLATNLSNDAAAE------------- 519
+V+ G C H L+ Y + + ++ + L + +
Sbjct: 102 LVRLLGVCLSPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKGMMYLEERRL 161
Query: 520 -ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAPD---YRK--- 570
D++++NVL+ + ++DFG+A+ L+ D ++A G +++A + YRK
Sbjct: 162 VHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTH 221
Query: 571 KCDVYSFRVLALEVIK--GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
+ DV+S+ V E++ GK G + +P RL P P + I
Sbjct: 222 QSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLLEKGERL----------PQPPIC--TI 269
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQL 655
+ V C + +SRP + + +
Sbjct: 270 DVYMVMVKCWMIDADSRPKFKELAAEF 296
>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|B Chain B, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|C Chain C, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|D Chain D, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3TV7|A Chain A, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|B Chain B, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|C Chain C, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|D Chain D, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TWJ|A Chain A, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|B Chain B, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|C Chain C, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|D Chain D, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
Length = 410
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 75/204 (36%), Gaps = 36/204 (17%)
Query: 422 DFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
D++ IG G G V S + K S + +D F+ E + +
Sbjct: 70 DYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSP 129
Query: 482 NIVK-FYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------- 521
+V+ FY F R+ ++ EY+ G L +SN E+
Sbjct: 130 WVVQLFYAF-QDDRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMG 188
Query: 522 ----DISSKNVLLDLEHKAHVSDFGIA-KFLKPDSSNWSALVGTYRYVAPD--------- 567
D+ N+LLD ++DFG K K VGT Y++P+
Sbjct: 189 FIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDG 248
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
Y ++CD +S V E++ G P
Sbjct: 249 YYGRECDWWSVGVFLYEMLVGDTP 272
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 38/196 (19%)
Query: 429 IGSGRHGSVYRAE--LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKF 486
+G G G V + + + +E+ AVK N ++ D E+E L K+ H NI+K
Sbjct: 30 LGKGSFGEVLKCKDRITQQEY-AVKVINKASAKNK--DTSTILREVELLKKLDHPNIMKL 86
Query: 487 YGFCSHARHSILIYEYLKRGSLATNL-------SNDAAA-----------------EELD 522
+ + ++ E G L + +DAA D
Sbjct: 87 FEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRD 146
Query: 523 ISSKNVLLDLEHKA---HVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-----YRKKCDV 574
+ +N+LL+ + K + DFG++ + + + +GT Y+AP+ Y +KCDV
Sbjct: 147 LKPENILLESKEKDCDIKIIDFGLSTCFQQN-TKMKDRIGTAYYIAPEVLRGTYDEKCDV 205
Query: 575 YSFRVLALEVIKGKHP 590
+S V+ ++ G P
Sbjct: 206 WSAGVILYILLSGTPP 221
>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
Length = 350
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LAGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
Into Receptor Autoregulation
Length = 343
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 429 IGSGRHGSVYRAE----LPSKEF--LAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482
IG G G V++A LP + F +AVK +D AD F E + + + N
Sbjct: 55 IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQAD---FQREAALMAEFDNPN 111
Query: 483 IVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFG 542
IVK G C+ + L++EY+ G L L + + +S DL +A VS G
Sbjct: 112 IVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHS----DLSTRARVSSPG 167
>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain
In Complex With Atp
pdb|3HRF|A Chain A, Crystal Structure Of Human Pdk1 Kinase Domain In Complex
With An Allosteric Activator Bound To The Pif-Pocket
pdb|3RCJ|A Chain A, Rapid Preparation Of Triazolyl Substituted Nh-Heterocyclic
Kinase Inhibitors Via One-Pot Sonogashira Coupling
Tms-Deprotection Cuaac Sequence
pdb|4A06|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps114 Bound To The Pif-Pocket
pdb|4AW1|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps210 Bound To The Pif-Pocket
Length = 311
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAPDYR------KKCD 573
D+ +N+LL+ + ++DFG AK L P+S A VGT +YV+P+ K D
Sbjct: 157 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 216
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
+++ + +++ G P + L +I + D + P + D+ KL+
Sbjct: 217 LWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEYD--FPEKFFPKARDLVEKLL 269
>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf
Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp
Analog And Substrate Peptide
Length = 334
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 109/290 (37%), Gaps = 82/290 (28%)
Query: 429 IGSGRHGSVYRAEL-------PSKEF-LAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P + +AVK ++D +E+E + I +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGK 99
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLS-------------NDAAAEEL----- 521
H+NI+ G C+ +I EY +G+L L N E++
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEXSYDINRVPEEQMTFKDL 159
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ + ++DFG+A+ D +N
Sbjct: 160 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLAR----DINNIDXXKK 215
Query: 560 T------YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR 607
T +++AP+ Y + DV+SF VL E+ F P P +
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI--------FTLGGSPYPGIPVEE 267
Query: 608 LDEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L ++L R+ P+ + +L +M C P RPT + + + L
Sbjct: 268 LFKLLKEGHRMDKPA-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 313
>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo
Form)
pdb|4FVQ|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain
(Mg-Atp-Bound Form)
Length = 289
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 88/228 (38%), Gaps = 56/228 (24%)
Query: 468 FFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSND------------ 515
FF ++K+ H+++V YG C +IL+ E++K GSL T L +
Sbjct: 59 FFEAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEV 118
Query: 516 ----AAAEEL---------DISSKNVLLDLEHKA--------HVSDFGIAKFLKPDSSNW 554
AAA ++ +KN+LL E +SD GI+ + P
Sbjct: 119 AKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPK---- 174
Query: 555 SALVGTYRYVAPDYRK-------KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR 607
L +V P+ + D +SF E+ G P ++ + R
Sbjct: 175 DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDK--------PLSALDSQR 226
Query: 608 LDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ + R P+P K + + +C+D P+ RP+ + I + L
Sbjct: 227 KLQFYEDRHQLPAP----KAAELANLINNCMDYEPDHRPSFRAIIRDL 270
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 74/185 (40%), Gaps = 15/185 (8%)
Query: 125 VRISLEGNNMRGTISEAFGIYLNLTFLDISDN--NFFGEIASNWGKCPKLSTLNVSMNNI 182
R+ LE N ++ F LT L +S N +F G + + L L++S N +
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90
Query: 183 TRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG--- 239
+G L L D H K EF SL LI I H + +
Sbjct: 91 ITMSSNFLG-LEQLEHLDF--QHSNLKQMSEFSVFLSLRNLIYLD---ISHTHTRVAFNG 144
Query: 240 ---SLTKLEFLNLSTNRFS-SLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSEL 295
L+ LE L ++ N F + +P+ L L +LDLS+ Q Q P L L L
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204
Query: 296 ELSHN 300
+SHN
Sbjct: 205 NMSHN 209
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 44/205 (21%)
Query: 124 LVRISLEGNNM--RGTISEA-FGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
L ++SL N + +G S++ FG +L +LD+S N ++SN+ +L L+ +
Sbjct: 54 LTKLSLSSNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS 111
Query: 181 NITR----SIPLEIGNLSTLNEFDLSLNH-------------------IVGK------IP 211
N+ + S+ L + NL L D+S H + G +P
Sbjct: 112 NLKQMSEFSVFLSLRNLIYL---DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168
Query: 212 KEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL--IPESLGNLLK-- 267
F +L +LT L L QL P+ SL+ L+ LN+S N F SL P N L+
Sbjct: 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228
Query: 268 ---LHYLDLSKYQFIQELPKELGKL 289
L+++ SK Q +Q P L L
Sbjct: 229 DYSLNHIMTSKKQELQHFPSSLAFL 253
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 10/196 (5%)
Query: 2 LTNLRELHLRDNYLT--GLIPTETWNLKSLVKLGLGGNQFRG--SLPSSVGNLSSLRYLF 57
LT L +L L N L+ G + SL L L F G ++ S+ L L +L
Sbjct: 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLD 107
Query: 58 LFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNG--ALERVIVGGNHFR-GPI 114
+NL SV + ++ L+ +H + N NG +LE + + GN F+ +
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167
Query: 115 PKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLST 174
P NL + L + AF +L L++S NNFF + L
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227
Query: 175 LNVSMNNITRSIPLEI 190
L+ S+N+I S E+
Sbjct: 228 LDYSLNHIMTSKKQEL 243
>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains
Trapped In Trans-Phosphorylation Reaction
Length = 334
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 109/290 (37%), Gaps = 82/290 (28%)
Query: 429 IGSGRHGSVYRAEL-------PSKEF-LAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P + +AVK ++D +E+E + I +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGK 99
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLS-------------NDAAAEEL----- 521
H+NI+ G C+ +I EY +G+L L N E++
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 159
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ + ++DFG+A+ D +N
Sbjct: 160 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLAR----DINNIDXXKK 215
Query: 560 T------YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR 607
T +++AP+ Y + DV+SF VL E+ F P P +
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI--------FTLGGSPYPGIPVEE 267
Query: 608 LDEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L ++L R+ P+ + +L +M C P RPT + + + L
Sbjct: 268 LFKLLKEGHRMDKPA-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 313
>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|B Chain B, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|C Chain C, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|D Chain D, Structure Of Human Phosphorylase Kinase, Gamma 2
Length = 365
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 21/149 (14%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------------YR 569
D+ +N+LLD + +SDFG + L+P L GT Y+AP+ Y
Sbjct: 225 DLKPENILLDDNMQIRLSDFGFSCHLEP-GEKLRELCGTPGYLAPEILKCSMDETHPGYG 283
Query: 570 KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
K+ D+++ V+ ++ G P IL ++ M +++ + SP+ + +
Sbjct: 284 KEVDLWACGVILFTLLAGSPPFWHRRQIL----MLRM----IMEGQYQFSSPEWDDRSST 335
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQLLFS 658
+ ++ L V PE+R T + Q F
Sbjct: 336 VKDLISRLLQVDPEARLTAEQALQHPFFE 364
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 109/267 (40%), Gaps = 56/267 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFL----AVKKFNSPL-PSDQIADQKEFFAEIEALTKIRHRN 482
+GSG G+VY+ +P E + A+K N P + EF E + + H +
Sbjct: 23 LGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANV----EFMDEALIMASMDHPH 78
Query: 483 IVKFYGFCSHAR---------HSILI-YEYLKRGSLATNLSNDAAAE------------- 519
+V+ G C H L+ Y + + ++ + L + +
Sbjct: 79 LVRLLGVCLSPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKGMMYLEERRL 138
Query: 520 -ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAPD---YRK--- 570
D++++NVL+ + ++DFG+A+ L+ D ++A G +++A + YRK
Sbjct: 139 VHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTH 198
Query: 571 KCDVYSFRVLALEVIK--GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
+ DV+S+ V E++ GK G + +P RL P P + I
Sbjct: 199 QSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLLEKGERL----------PQPPIC--TI 246
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQL 655
+ V C + +SRP + + +
Sbjct: 247 DVYMVMVKCWMIDADSRPKFKELAAEF 273
>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|C Chain C, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|D Chain D, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome
Length = 324
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 109/290 (37%), Gaps = 82/290 (28%)
Query: 429 IGSGRHGSVYRAEL-------PSKEF-LAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P + +AVK ++D +E+E + I +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGK 99
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLS-------------NDAAAEEL----- 521
H+NI+ G C+ +I EY +G+L L N E++
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 159
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ + ++DFG+A+ D +N
Sbjct: 160 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLAR----DINNIDYYKN 215
Query: 560 T------YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR 607
T +++AP+ Y + DV+SF VL E+ F P P +
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI--------FTLGGSPYPGIPVEE 267
Query: 608 LDEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L ++L R+ P+ + +L +M C P RPT + + + L
Sbjct: 268 LFKLLKEGHRMDKPA-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 313
>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase
Domain From Human
Length = 314
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 50/178 (28%)
Query: 432 GRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCS 491
GR G V++A+L +F+AVK F PL D+ + Q E EI + ++H N+++F +
Sbjct: 26 GRFGCVWKAQL-MNDFVAVKIF--PL-QDKQSWQSE--REIFSTPGMKHENLLQF--IAA 77
Query: 492 HARHS------ILIYEYLKRGSLATNLSNDA--------AAEEL---------------- 521
R S LI + +GSL L + AE +
Sbjct: 78 EKRGSNLEVELWLITAFHDKGSLTDYLKGNIITWNELCHVAETMSRGLSYLHEDVPWCRG 137
Query: 522 ----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDS--SNWSALVGTYRYVAPD 567
D SKNVLL + A ++DFG+A +P + VGT RY+AP+
Sbjct: 138 EGHKPSIAHRDFKSKNVLLKSDLTAVLADFGLAVRFEPGKPPGDTHGQVGTRRYMAPE 195
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 167 GKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILR 226
G P L TL++S N + +S+PL L L D+S N + L L +L L+
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 227 GNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL 257
GN+L P + KLE L+L+ N+ + L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZR|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 109/290 (37%), Gaps = 82/290 (28%)
Query: 429 IGSGRHGSVYRAEL-------PSKEF-LAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P + +AVK ++D +E+E + I +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGK 99
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLS-------------NDAAAEEL----- 521
H+NI+ G C+ +I EY +G+L L N E++
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 159
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ + ++DFG+A+ D +N
Sbjct: 160 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMRIADFGLAR----DINNIDYYKK 215
Query: 560 T------YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR 607
T +++AP+ Y + DV+SF VL E+ F P P +
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI--------FTLGGSPYPGIPVEE 267
Query: 608 LDEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L ++L R+ P+ + +L +M C P RPT + + + L
Sbjct: 268 LFKLLKEGHRMDKPA-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 313
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 167 GKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILR 226
G P L TL++S N + +S+PL L L D+S N + L L +L L+
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 227 GNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL 257
GN+L P + KLE L+L+ N+ + L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human
5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant
(T172d)
pdb|3AQV|A Chain A, Human Amp-Activated Protein Kinase Alpha 2 Subunit Kinase
Domain (T172d) Complexed With Compound C
Length = 276
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 80/232 (34%), Gaps = 52/232 (22%)
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL--------- 521
EI+ L RH +I+K Y S ++ EY+ G L + EE+
Sbjct: 61 EIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQI 120
Query: 522 ---------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP 566
D+ +NVLLD A ++DFG++ + D G+ Y AP
Sbjct: 121 LSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMS-DGEFLRDSCGSPNYAAP 179
Query: 567 DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML---DPRLPPPSPDV 623
EVI G+ G I ++ L L D +P +
Sbjct: 180 ----------------EVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKI 223
Query: 624 QGKLI--------SIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
+G + S+ + L V P R T++ I + F SY P
Sbjct: 224 RGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQDLPSYLFP 275
>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant
V617f (Mg- Atp-Bound Form)
Length = 289
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 89/228 (39%), Gaps = 56/228 (24%)
Query: 468 FFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDA----------A 517
FF ++K+ H+++V YG C +IL+ E++K GSL T L +
Sbjct: 59 FFEAASMMSKLSHKHLVLNYGVCFCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEV 118
Query: 518 AEEL---------------DISSKNVLLDLEHKA--------HVSDFGIAKFLKPDSSNW 554
A++L ++ +KN+LL E +SD GI+ + P
Sbjct: 119 AKQLAWAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPK---- 174
Query: 555 SALVGTYRYVAPDYRK-------KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR 607
L +V P+ + D +SF E+ G P ++ + R
Sbjct: 175 DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDK--------PLSALDSQR 226
Query: 608 LDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ + R P+P K + + +C+D P+ RP+ + I + L
Sbjct: 227 KLQFYEDRHQLPAP----KAAELANLINNCMDYEPDHRPSFRAIIRDL 270
>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent
Protein Kinase With Unphosphorylated Turn Motif
Length = 371
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 167 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 214
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 215 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 258
>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
A- 443654
Length = 351
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 147 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 194
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 195 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent
Protein Kinase
Length = 350
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 123/310 (39%), Gaps = 42/310 (13%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN 62
T L+EL L +L GL P+ L L KL L N F S N SL +L++ N
Sbjct: 275 TQLQELDLTATHLKGL-PSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN- 332
Query: 63 LSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKC----L 118
V L L V LE + G L+ + + N C L
Sbjct: 333 --------VKKLHLGVGCLE-------------KLGNLQTLDLSHNDIEAS--DCCSLQL 369
Query: 119 RNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPK-----LS 173
+N +L ++L N G S+AF L LD++ F + N + P L
Sbjct: 370 KNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLA----FTRLHINAPQSPFQNLHFLQ 425
Query: 174 TLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIV-GKIPKE--FGKLNSLTKLILRGNQL 230
LN++ + S + L L +L NH G I K + SL LIL L
Sbjct: 426 VLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGL 485
Query: 231 IGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLV 290
+ SL K+ ++LS N + +SL +L + YL+L+ P+ L L
Sbjct: 486 LSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISPRLLPILS 544
Query: 291 QLSELELSHN 300
Q S + LSHN
Sbjct: 545 QQSTINLSHN 554
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 128/325 (39%), Gaps = 72/325 (22%)
Query: 29 LVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLM-LTVLALENNHFT 87
L L L GN +S+ SL++LFL + +S V NL L L L +NH +
Sbjct: 80 LSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHIS 139
Query: 88 G----------NLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLE--GNNMR 135
NL+ +N A+ + + +R+ + +SL GNN++
Sbjct: 140 SIKFPKDFPARNLKVLDFQNNAIHYIS----------REDMRSLEQAINLSLNFNGNNVK 189
Query: 136 GTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTL-NVSMNNITRSIPLEIGNLS 194
G AF D+ F + N+G P LS + N N+ T+S L +G
Sbjct: 190 GIELGAF------------DSTIFQSL--NFGGTPNLSVIFNGLQNSTTQS--LWLGTFE 233
Query: 195 TLNEFDLSLNHIVGKIPKEFGKLN------------------SLTKLILRGNQLIGHLPS 236
+++ D+S + G LN L +L L L G LPS
Sbjct: 234 DIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPS 292
Query: 237 EIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELG---KLVQLS 293
+ L L+ L LS N F L S N L +L + +++L +G KL L
Sbjct: 293 GMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN--VKKLHLGVGCLEKLGNLQ 350
Query: 294 ELELSHNFLGREIPSQICSMECCEV 318
L+LSHN I + +CC +
Sbjct: 351 TLDLSHN--------DIEASDCCSL 367
>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein
Kinase Catalytic Subunit
pdb|1J3H|B Chain B, Crystal Structure Of Apoenzyme Camp-Dependent Protein
Kinase Catalytic Subunit
Length = 350
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LXGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl)amide
pdb|2C1B|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
(4r,2s)-5'-(4-(4-Chlorobenzyloxy)pyrrolidin-2-
Ylmethanesulfonyl)isoquinoline
pdb|2VO7|A Chain A, Structure Of Pka Complexed With 4-(4-Chlorobenzyl)-1-(7h-
Pyrrolo(2,3-D)pyrimidin-4-Yl)piperidin-4-Ylamine
pdb|3AG9|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
pdb|3AG9|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
Length = 351
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 147 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 194
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 195 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 167 GKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILR 226
G P L TL++S N + +S+PL L L D+S N + L L +L L+
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 227 GNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL 257
GN+L P + KLE L+L+ N+ + L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit
Of Camp- Dependent Protein Kinase In Complex With Sp20
And Amp-Pnp
pdb|4DFZ|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit
Of Camp- Dependent Protein Kinase In Complex With Sp20
Length = 350
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent
Protein Kinase Cgd3_920 From Cryptosporidium Parvum
Length = 286
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 38/196 (19%)
Query: 429 IGSGRHGSVYRAE--LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKF 486
+G G G V + + + +E+ AVK N ++ D E+E L K+ H NI+K
Sbjct: 30 LGKGSFGEVLKCKDRITQQEY-AVKVINKASAKNK--DTSTILREVELLKKLDHPNIMKL 86
Query: 487 YGFCSHARHSILIYEYLKRGSLATNL-------SNDAAA-----------------EELD 522
+ + ++ E G L + +DAA D
Sbjct: 87 FEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRD 146
Query: 523 ISSKNVLLDLEHK---AHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-----YRKKCDV 574
+ +N+LL+ + K + DFG++ + + + +GT Y+AP+ Y +KCDV
Sbjct: 147 LKPENILLESKEKDCDIKIIDFGLSTCFQQN-TKMKDRIGTAYYIAPEVLRGTYDEKCDV 205
Query: 575 YSFRVLALEVIKGKHP 590
+S V+ ++ G P
Sbjct: 206 WSAGVILYILLSGTPP 221
>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
pdb|4AE6|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
Length = 343
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 139 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 186
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 187 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 230
>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit
Of Camp- Dependent Protein Kinase
Length = 350
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol
Length = 351
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 147 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 194
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 195 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|B Chain B, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|E Chain E, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
Length = 371
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 167 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 214
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 215 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 258
>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
A Peptide Inhibitor And Detergent
Length = 350
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077)
pdb|1XH4|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|3BWJ|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Lead Compound Arc-1034
pdb|3KKV|A Chain A, Structure Of Pka With A Protein Kinase B-Selective
Inhibitor
Length = 350
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Axitinib (Ag-013736)
(N-Methyl-2-(
3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-
Benzamide)
pdb|4AGD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sunitinib (Su11248) (N-2-
Diethylaminoethyl)-5-((Z)-(5-Fluoro-2-Oxo-1h-Indol-3-
Ylidene)methyl)-2,4-Dimethyl-1h-Pyrrole-3-Carboxamide)
pdb|4ASD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sorafenib (Bay 43-9006)
pdb|4ASE|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Tivozanib (Av-951)
Length = 353
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 94/247 (38%), Gaps = 67/247 (27%)
Query: 463 ADQKEFFAEIEALTKIRHR-NIVKFYGFCSHARHSIL-IYEYLKRGSLATNLSND----- 515
++ + +E++ L I H N+V G C+ ++ I E+ K G+L+T L +
Sbjct: 109 SEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFV 168
Query: 516 ---AAAEEL--------------------------------DISSKNVLLDLEHKAHVSD 540
A E+L D++++N+LL ++ + D
Sbjct: 169 PYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICD 228
Query: 541 FGIAK--FLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRG 592
FG+A+ + PD +++AP+ Y + DV+SF VL E+
Sbjct: 229 FGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI-------- 280
Query: 593 FVSSILPSPSVINMRLDEMLDPRLPPPS----PDVQGKLISIMEVAFSCLDVSPESRPTM 648
F P P V ++DE RL + PD + + C P RPT
Sbjct: 281 FSLGASPYPGV---KIDEEFCRRLKEGTRMRAPDYTTP--EMYQTMLDCWHGEPSQRPTF 335
Query: 649 QTITQQL 655
+ + L
Sbjct: 336 SELVEHL 342
>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In
Complex With Staurosporine
pdb|1Q8T|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase
(Pka) In Complex With Rho-Kinase Inhibitor Y-27632
pdb|1Q8U|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor H-1152p
pdb|1SVE|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 1
pdb|1SVG|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 4
pdb|1VEB|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 5
pdb|3E8C|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|C Chain C, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|D Chain D, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|F Chain F, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8E|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|I Chain I, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|L Chain L, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|P Chain P, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
Length = 350
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-670
pdb|3L9L|A Chain A, Crystal Structure Of Pka With Compound 36
pdb|3L9L|B Chain B, Crystal Structure Of Pka With Compound 36
pdb|3OOG|A Chain A, Human Camp-Dependent Protein Kinase In Complex With A
Small Fragment
pdb|3OVV|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OWP|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OXT|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3P0M|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3POO|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
Length = 351
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 147 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 194
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 195 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
pdb|3DNE|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 167 GKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILR 226
G P L TL++S N + +S+PL L L D+S N + L L +L L+
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 227 GNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL 257
GN+L P + KLE L+L+ N+ + L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 8
pdb|1XH5|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH6|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH8|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|2GFC|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant
Catalytic Subunit Of Camp-Dependent Protein Kinase
Complexed With The Peptide Inhibitor Pki(5-24) And
Adenosine
pdb|1JLU|E Chain E, Crystal Structure Of The Catalytic Subunit Of
Camp-dependent Protein Kinase Complexed With A
Phosphorylated Substrate Peptide And Detergent
pdb|1RE8|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 2
pdb|1REJ|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 1
pdb|1REK|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 8
pdb|2QVS|E Chain E, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
pdb|3FJQ|E Chain E, Crystal Structure Of Camp-Dependent Protein Kinase
Catalytic Subunit Alpha In Complex With Peptide
Inhibitor Pki Alpha (6-25)
pdb|3IDB|A Chain A, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
pdb|3IDC|A Chain A, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
pdb|3O7L|D Chain D, Crystal Structure Of Phospholamban (1-19):pka
C-Subunit:amp-Pnp:mg2+ Complex
pdb|3OW3|A Chain A, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|1ATP|E Chain E, 2.2 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
Mnatp And A Peptide Inhibitor
pdb|4DIN|A Chain A, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 350
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of
Camp-Dependent Protein Kinase And An Inhibitor Peptide
Displays An Open Conformation
Length = 350
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
pdb|1CDK|B Chain B, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
Length = 350
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
Length = 333
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 92/221 (41%), Gaps = 46/221 (20%)
Query: 421 NDFDAKYCIGSGRHGSVYR-AELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
+DF+ +G+G G V++ + PS +A K + + + A + + E++ L +
Sbjct: 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHECN 62
Query: 480 HRNIVKFYG-FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL----------------- 521
IV FYG F S SI + E++ GSL L E
Sbjct: 63 SPYIVGFYGAFYSDGEISICM-EHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLR 121
Query: 522 --------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
D+ N+L++ + + DFG++ L +N + VGT Y++P+
Sbjct: 122 EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN--SFVGTRSYMSPERLQGTH 179
Query: 568 YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRL 608
Y + D++S + +E+ G++P +P P + L
Sbjct: 180 YSVQSDIWSMGLSLVEMAVGRYP-------IPPPDAKELEL 213
>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp-
Dependent Protein Kinase Complexed With A Substrate
Peptide, Adp And Detergent
Length = 350
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
pdb|2CPK|E Chain E, Crystal Structure Of The Catalytic Subunit Of Cyclic
Adenosine Monophosphate-Dependent Protein Kinase
pdb|4DG0|E Chain E, Crystal Structure Of Myristoylated Wt Catalytic Subunit Of
Camp- Dependent Protein Kinase In Complex With Sp20 And
Amp-Pnp
pdb|4DG2|E Chain E, Crystal Structure Of Myristoylated Wt Catalytic Subunit Of
Camp- Dependent Protein Kinase In Complex With Sp20
pdb|4DH1|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With Low Mg2+, Atp And Ip20
pdb|4DH3|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Atp And Ip20
pdb|4DH5|A Chain A, Room Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Adp,
Phosphate, And Ip20
pdb|4DH7|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Amp-pnp And
Ip20'
pdb|4DH8|A Chain A, Room Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Amp-pnp And
Ip20
Length = 350
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of
Camp-Dependent Protein Kinase And Adenosine Further
Defines Conformational Flexibility
pdb|1BX6|A Chain A, Crystal Structure Of The Potent Natural Product Inhibitor
Balanol In Complex With The Catalytic Subunit Of Camp-
Dependent Protein Kinase
Length = 350
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363
Length = 340
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 39/207 (18%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVK--KFNSPLPSDQIADQKEFFAEIEAL 475
+N+F+ +G G G V E + + A+K K + D++A E L
Sbjct: 6 TMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHT---LTENRVL 62
Query: 476 TKIRHRNIVKF-YGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-------------- 520
RH + Y F +H R ++ EY G L +LS + E
Sbjct: 63 QNSRHPFLTALKYSFQTHDRLCFVM-EYANGGELFFHLSRERVFSEDRARFYGAEIVSAL 121
Query: 521 -----------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP--- 566
D+ +N++LD + ++DFG+ K D + GT Y+AP
Sbjct: 122 DYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKXFCGTPEYLAPEVL 181
Query: 567 ---DYRKKCDVYSFRVLALEVIKGKHP 590
DY + D + V+ E++ G+ P
Sbjct: 182 EDNDYGRAVDWWGLGVVMYEMMCGRLP 208
>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 345
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 141 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 188
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 189 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 232
>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To
Hydroxyfasudil
Length = 351
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 147 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 194
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 195 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The
Catalytic Subunit Of Camp-Dependent Protein Kinase
pdb|3TNP|C Chain C, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|F Chain F, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNQ|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 350
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex
With N-(4-
(5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h-
Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide
Length = 446
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 79/207 (38%), Gaps = 39/207 (18%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVK--KFNSPLPSDQIADQKEFFAEIEAL 475
+N+F+ +G G G V E + + A+K K + D++A E L
Sbjct: 146 TMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHT---LTENRVL 202
Query: 476 TKIRHRNIVKF-YGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-------------- 520
RH + Y F +H R + EY G L +LS + E
Sbjct: 203 QNSRHPFLTALKYSFQTHDR-LCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSAL 261
Query: 521 -----------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP--- 566
D+ +N++LD + ++DFG+ K D + GT Y+AP
Sbjct: 262 DYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVL 321
Query: 567 ---DYRKKCDVYSFRVLALEVIKGKHP 590
DY + D + V+ E++ G+ P
Sbjct: 322 EDNDYGRAVDWWGLGVVMYEMMCGRLP 348
>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
pdb|4AE9|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
Length = 343
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 139 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 186
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 187 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 230
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 10/200 (5%)
Query: 101 ERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFG 160
+R+ + GN ++C NL + L N + G + AF L LD+SDN
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 161 EI-ASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNS 219
+ + + L TL++ + P L+ L L N++ F L +
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 220 LTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQF- 278
LT L L GN++ L L+ L L N + + P + +L +L ++ Y F
Sbjct: 154 LTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRL----MTLYLFA 209
Query: 279 --IQELPKELGKLVQLSELE 296
+ LP E+ LV L L+
Sbjct: 210 NNLSMLPAEV--LVPLRSLQ 227
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 8/162 (4%)
Query: 2 LTNLRELHLRDNYLTGLI-PTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
LT L +L L DN ++ PT L L L L + P L++L+YL+L +
Sbjct: 78 LTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 61 NNLSGSIPPS----VGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPK 116
NNL ++P + +GNL T L L N H +L+R+++ NH P
Sbjct: 138 NNLQ-ALPDNTFRDLGNL--THLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPH 194
Query: 117 CLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNF 158
R+ L+ + L NN+ +E +L +L ++DN +
Sbjct: 195 AFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPW 236
>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit
Of Camp- Dependent Protein Kinase Reveal Open And Closed
Conformations
Length = 350
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered
N- Terminal Helix
pdb|1XHA|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+++D + V+DFG+AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLMIDQQGYIQVTDFGLAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium
Parvum Calcium Dependent Protein Kinase In Complex With
3- Mb-Pp1
Length = 287
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 38/196 (19%)
Query: 429 IGSGRHGSVYRAE--LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKF 486
+G G G V + + + +E+ AVK N ++ D E+E L K+ H NI+K
Sbjct: 30 LGKGSFGEVLKCKDRITQQEY-AVKVINKASAKNK--DTSTILREVELLKKLDHPNIMKL 86
Query: 487 YGFCSHARHSILIYEYLKRGSLATNL-------SNDAAA-----------------EELD 522
+ + ++ E G L + +DAA D
Sbjct: 87 FEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRD 146
Query: 523 ISSKNVLLDLEHK---AHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-----YRKKCDV 574
+ +N+LL+ + K + DFG++ + + + +GT Y+AP+ Y +KCDV
Sbjct: 147 LKPENILLESKEKDCDIKIIDFGLSTCFQQN-TKMKDRIGTAYYIAPEVLRGTYDEKCDV 205
Query: 575 YSFRVLALEVIKGKHP 590
+S V+ ++ G P
Sbjct: 206 WSAGVILYILLSGTPP 221
>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H89 Protein
Kinase Inhibitor N-[2-
(4-Bromocinnamylamino)ethyl]-5-Isoquinoline
pdb|1YDR|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H7 Protein
Kinase Inhibitor 1-(5-
Isoquinolinesulfonyl)-2-Methylpiperazine
pdb|1YDS|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H8 Protein
Kinase Inhibitor [n-(2-Methylamino)ethyl]-5-
Isoquinolinesulfonamide
Length = 350
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) Complexed With A Potent Inhibitor
Rdea119 And Mgatp
pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions.
pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions
Length = 341
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 92/221 (41%), Gaps = 46/221 (20%)
Query: 421 NDFDAKYCIGSGRHGSVYR-AELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
+DF+ +G+G G V++ + PS +A K + + + A + + E++ L +
Sbjct: 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHECN 62
Query: 480 HRNIVKFYG-FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL----------------- 521
IV FYG F S SI + E++ GSL L E
Sbjct: 63 SPYIVGFYGAFYSDGEISICM-EHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLR 121
Query: 522 --------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
D+ N+L++ + + DFG++ L +N + VGT Y++P+
Sbjct: 122 EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN--SFVGTRSYMSPERLQGTH 179
Query: 568 YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRL 608
Y + D++S + +E+ G++P +P P + L
Sbjct: 180 YSVQSDIWSMGLSLVEMAVGRYP-------IPPPDAKELEL 213
>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZ5|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 109/290 (37%), Gaps = 82/290 (28%)
Query: 429 IGSGRHGSVYRAEL-------PSKEF-LAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P + +AVK ++D +E+E + I +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGK 99
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLS-------------NDAAAEEL----- 521
H+NI+ G C+ +I EY +G+L L N E++
Sbjct: 100 HKNIITLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 159
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ + ++DFG+A+ D +N
Sbjct: 160 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLAR----DINNIDYYKK 215
Query: 560 T------YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR 607
T +++AP+ Y + DV+SF VL E+ F P P +
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI--------FTLGGSPYPGIPVEE 267
Query: 608 LDEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L ++L R+ P+ + +L +M C P RPT + + + L
Sbjct: 268 LFKLLKEGHRMDKPA-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 313
>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric
Inhibitor
Length = 446
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 79/207 (38%), Gaps = 39/207 (18%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVK--KFNSPLPSDQIADQKEFFAEIEAL 475
+N+F+ +G G G V E + + A+K K + D++A E L
Sbjct: 149 TMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHT---LTENRVL 205
Query: 476 TKIRHRNIVKF-YGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-------------- 520
RH + Y F +H R + EY G L +LS + E
Sbjct: 206 QNSRHPFLTALKYSFQTHDR-LCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSAL 264
Query: 521 -----------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP--- 566
D+ +N++LD + ++DFG+ K D + GT Y+AP
Sbjct: 265 DYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVL 324
Query: 567 ---DYRKKCDVYSFRVLALEVIKGKHP 590
DY + D + V+ E++ G+ P
Sbjct: 325 EDNDYGRAVDWWGLGVVMYEMMCGRLP 351
>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3AGL|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3VQH|A Chain A, Bromine Sad Partially Resolves Multiple Binding Modes For
Pka Inhibitor H-89
Length = 351
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 147 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 194
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 195 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 25/146 (17%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAK--FLKPDSSNWSALVGTYRYVAPD------YRKKCD 573
D++++N+LL ++ + DFG+A+ + PD +++AP+ Y + D
Sbjct: 169 DLAARNILLSEKNVVKIXDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSD 228
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS----PDVQGKLIS 629
V+SF VL E+ F P P V ++DE RL + PD
Sbjct: 229 VWSFGVLLWEI--------FSLGASPYPGV---KIDEEFXRRLKEGTRMRAPDYTTP--E 275
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+ + C P RPT + + L
Sbjct: 276 MYQTMLDCWHGEPSQRPTFSELVEHL 301
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 5 LRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLS 64
L ELHL N + + + L +LGLG NQ R S+ L +LR L L N LS
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254
Query: 65 GSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNG-ALERVIVGG-NHFRGPIP 115
+P + +L +L V+ L N+ T ++ C G ++R G + F P+P
Sbjct: 255 -RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 28/187 (14%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
++ +F IG G +G VY+A + E +A+KK ++ + EI L +
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 59
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYL----KRGSLATNLS-------------------- 513
+ H NIVK L++E+L K+ A+ L+
Sbjct: 60 LNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 119
Query: 514 -NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKC 572
+ D+ +N+L++ E ++DFG+A+ ++ V T Y AP+ C
Sbjct: 120 CHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGC 179
Query: 573 DVYSFRV 579
YS V
Sbjct: 180 KYYSTAV 186
>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp
pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgatp
Length = 328
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 92/221 (41%), Gaps = 46/221 (20%)
Query: 421 NDFDAKYCIGSGRHGSVYR-AELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
+DF+ +G+G G V++ + PS +A K + + + A + + E++ L +
Sbjct: 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHECN 62
Query: 480 HRNIVKFYG-FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL----------------- 521
IV FYG F S SI + E++ GSL L E
Sbjct: 63 SPYIVGFYGAFYSDGEISICM-EHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLR 121
Query: 522 --------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
D+ N+L++ + + DFG++ L +N + VGT Y++P+
Sbjct: 122 EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN--SFVGTRSYMSPERLQGTH 179
Query: 568 YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRL 608
Y + D++S + +E+ G++P +P P + L
Sbjct: 180 YSVQSDIWSMGLSLVEMAVGRYP-------IPPPDAKELEL 213
>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
Length = 322
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 92/221 (41%), Gaps = 46/221 (20%)
Query: 421 NDFDAKYCIGSGRHGSVYR-AELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
+DF+ +G+G G V++ + PS +A K + + + A + + E++ L +
Sbjct: 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHECN 62
Query: 480 HRNIVKFYG-FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL----------------- 521
IV FYG F S SI + E++ GSL L E
Sbjct: 63 SPYIVGFYGAFYSDGEISICM-EHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLR 121
Query: 522 --------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
D+ N+L++ + + DFG++ L +N + VGT Y++P+
Sbjct: 122 EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN--SFVGTRSYMSPERLQGTH 179
Query: 568 YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRL 608
Y + D++S + +E+ G++P +P P + L
Sbjct: 180 YSVQSDIWSMGLSLVEMAVGRYP-------IPPPDAKELEL 213
>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr)
Kinase Domain
Length = 316
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 94/247 (38%), Gaps = 67/247 (27%)
Query: 463 ADQKEFFAEIEALTKIRHR-NIVKFYGFCSHARHSIL-IYEYLKRGSLATNLSND----- 515
++ + +E++ L I H N+V G C+ ++ I E+ K G+L+T L +
Sbjct: 72 SEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFV 131
Query: 516 ---AAAEEL--------------------------------DISSKNVLLDLEHKAHVSD 540
A E+L D++++N+LL ++ + D
Sbjct: 132 PYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICD 191
Query: 541 FGIAK--FLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRG 592
FG+A+ + PD +++AP+ Y + DV+SF VL E+
Sbjct: 192 FGLARDIYKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI-------- 243
Query: 593 FVSSILPSPSVINMRLDEMLDPRLPP----PSPDVQGKLISIMEVAFSCLDVSPESRPTM 648
F P P V ++DE RL +PD + + C P RPT
Sbjct: 244 FSLGASPYPGV---KIDEEFCRRLKEGTRMRAPDYTTP--EMYQTMLDCWHGEPSQRPTF 298
Query: 649 QTITQQL 655
+ + L
Sbjct: 299 SELVEHL 305
>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer
Length = 395
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 92/221 (41%), Gaps = 46/221 (20%)
Query: 421 NDFDAKYCIGSGRHGSVYR-AELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
+DF+ +G+G G V++ + PS +A K + + + A + + E++ L +
Sbjct: 68 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHECN 124
Query: 480 HRNIVKFYG-FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL----------------- 521
IV FYG F S SI + E++ GSL L E
Sbjct: 125 SPYIVGFYGAFYSDGEISICM-EHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLR 183
Query: 522 --------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
D+ N+L++ + + DFG++ L +N + VGT Y++P+
Sbjct: 184 EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN--SFVGTRSYMSPERLQGTH 241
Query: 568 YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRL 608
Y + D++S + +E+ G++P +P P + L
Sbjct: 242 YSVQSDIWSMGLSLVEMAVGRYP-------IPPPDAKELEL 275
>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome.
pdb|2PWL|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 109/290 (37%), Gaps = 82/290 (28%)
Query: 429 IGSGRHGSVYRAEL-------PSKEF-LAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P + +AVK ++D +E+E + I +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGK 99
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLS-------------NDAAAEEL----- 521
H+NI+ G C+ +I EY +G+L L N E++
Sbjct: 100 HKNIIHLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 159
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ + ++DFG+A+ D +N
Sbjct: 160 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLAR----DINNIDYYKK 215
Query: 560 T------YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR 607
T +++AP+ Y + DV+SF VL E+ F P P +
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI--------FTLGGSPYPGIPVEE 267
Query: 608 LDEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L ++L R+ P+ + +L +M C P RPT + + + L
Sbjct: 268 LFKLLKEGHRMDKPA-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 313
>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate
Peptide And Inhibitor
pdb|3CQW|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate
Peptide And Inhibitor
pdb|3MV5|A Chain A, Crystal Structure Of Akt-1-Inhibitor Complexes
pdb|3MVH|A Chain A, Crystal Structure Of Akt-1-Inhibitor Complexes
Length = 342
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 39/207 (18%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVK--KFNSPLPSDQIADQKEFFAEIEAL 475
+N+F+ +G G G V E + + A+K K + D++A E L
Sbjct: 8 TMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHT---LTENRVL 64
Query: 476 TKIRHRNIVKF-YGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-------------- 520
RH + Y F +H R ++ EY G L +LS + E
Sbjct: 65 QNSRHPFLTALKYSFQTHDRLCFVM-EYANGGELFFHLSRERVFSEDRARFYGAEIVSAL 123
Query: 521 -----------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP--- 566
D+ +N++LD + ++DFG+ K D + GT Y+AP
Sbjct: 124 DYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKXFCGTPEYLAPEVL 183
Query: 567 ---DYRKKCDVYSFRVLALEVIKGKHP 590
DY + D + V+ E++ G+ P
Sbjct: 184 EDNDYGRAVDWWGLGVVMYEMMCGRLP 210
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 72/188 (38%), Gaps = 30/188 (15%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
++ +F IG G +G VY+A + E +A+KK ++ + EI L +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 61
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAE------------------ 519
+ H NIVK L++E+L + L T + A
Sbjct: 62 LNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKTFMDASALTGIPLPLIKSYLFQLLQGLA 120
Query: 520 --------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKK 571
D+ +N+L++ E ++DFG+A+ + V T Y AP+
Sbjct: 121 FCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLG 180
Query: 572 CDVYSFRV 579
C YS V
Sbjct: 181 CKYYSTAV 188
>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And
Potent Inhibitors For Akt: Synthesis And Sar Studies
Length = 337
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 133 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDEQGYIQVTDFGFAKRVK--G 180
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 181 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 224
>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyrazolone Inhibitor
Length = 314
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 94/247 (38%), Gaps = 67/247 (27%)
Query: 463 ADQKEFFAEIEALTKIRHR-NIVKFYGFCSHARHSIL-IYEYLKRGSLATNLSND----- 515
++ + +E++ L I H N+V G C+ ++ I E+ K G+L+T L +
Sbjct: 63 SEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFV 122
Query: 516 ---AAAEEL--------------------------------DISSKNVLLDLEHKAHVSD 540
A E+L D++++N+LL ++ + D
Sbjct: 123 PYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICD 182
Query: 541 FGIAK--FLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRG 592
FG+A+ + PD +++AP+ Y + DV+SF VL E+
Sbjct: 183 FGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI-------- 234
Query: 593 FVSSILPSPSVINMRLDEMLDPRLPP----PSPDVQGKLISIMEVAFSCLDVSPESRPTM 648
F P P V ++DE RL +PD + + C P RPT
Sbjct: 235 FSLGASPYPGV---KIDEEFCRRLKEGTRMRAPDYTTP--EMYQTMLDCWHGEPSQRPTF 289
Query: 649 QTITQQL 655
+ + L
Sbjct: 290 SELVEHL 296
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 28/186 (15%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ +F IG G +G VY+A + E +A+KK ++ + EI L ++
Sbjct: 9 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKEL 66
Query: 479 RHRNIVKFYGFCSHARHSILIYEY----LKRGSLATNLS--------------------- 513
H NIVK L++E+ LK+ A+ L+
Sbjct: 67 NHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 126
Query: 514 NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKCD 573
+ D+ +N+L++ E ++DFG+A+ ++ V T Y AP+ C
Sbjct: 127 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCK 186
Query: 574 VYSFRV 579
YS V
Sbjct: 187 YYSTAV 192
>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor
pdb|3OCB|B Chain B, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor
pdb|3OW4|A Chain A, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|3OW4|B Chain B, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|3QKK|A Chain A, Spirochromane Akt Inhibitors
pdb|3QKL|A Chain A, Spirochromane Akt Inhibitors
pdb|3QKM|A Chain A, Spirocyclic Sulfonamides As Akt Inhibitors
pdb|4EKK|A Chain A, Akt1 With Amp-Pnp
pdb|4EKK|B Chain B, Akt1 With Amp-Pnp
pdb|4EKL|A Chain A, Akt1 With Gdc0068
Length = 341
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 39/207 (18%)
Query: 419 AINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVK--KFNSPLPSDQIADQKEFFAEIEAL 475
+N+F+ +G G G V E + + A+K K + D++A E L
Sbjct: 7 TMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHT---LTENRVL 63
Query: 476 TKIRHRNIVKF-YGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-------------- 520
RH + Y F +H R ++ EY G L +LS + E
Sbjct: 64 QNSRHPFLTALKYSFQTHDRLCFVM-EYANGGELFFHLSRERVFSEDRARFYGAEIVSAL 122
Query: 521 -----------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP--- 566
D+ +N++LD + ++DFG+ K D + GT Y+AP
Sbjct: 123 DYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKXFCGTPEYLAPEVL 182
Query: 567 ---DYRKKCDVYSFRVLALEVIKGKHP 590
DY + D + V+ E++ G+ P
Sbjct: 183 EDNDYGRAVDWWGLGVVMYEMMCGRLP 209
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 28/187 (14%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
+ +F IG G +G VY+A + E +A+KK ++ + EI L +
Sbjct: 1 GMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 58
Query: 478 IRHRNIVKFYGFCSHARHSILIYEY----LKRGSLATNLS-------------------- 513
+ H NIVK L++E+ LK+ A+ L+
Sbjct: 59 LNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 118
Query: 514 -NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKC 572
+ D+ +N+L++ E ++DFG+A+ ++ V T Y AP+ C
Sbjct: 119 CHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGC 178
Query: 573 DVYSFRV 579
YS V
Sbjct: 179 KYYSTAV 185
>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A60|B Chain B, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A61|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form Ii)
Length = 327
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 36/203 (17%)
Query: 423 FDAKYCIGSGRHGSVYRAE----LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
F+ +G G +G V++ + + A+K + D AE L ++
Sbjct: 19 FELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEV 78
Query: 479 RHRNIVKF-YGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE----------------- 520
+H IV Y F + + LI EYL G L L + E
Sbjct: 79 KHPFIVDLIYAFQTGGK-LYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHL 137
Query: 521 -------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
D+ +N++L+ + ++DFG+ K D + GT Y+AP+
Sbjct: 138 HQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSG 197
Query: 568 YRKKCDVYSFRVLALEVIKGKHP 590
+ + D +S L +++ G P
Sbjct: 198 HNRAVDWWSLGALMYDMLTGAPP 220
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 111/266 (41%), Gaps = 4/266 (1%)
Query: 4 NLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNL 63
+L EL L +N ++ + P NL +L LGL N+ + LS+L L + EN +
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 64 SGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCP 122
+ +L L L + +N +LE++ + + + L +
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176
Query: 123 NLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNI 182
L+ + L N+ +F L L+IS + + N L++L+++ N+
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236
Query: 183 TRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLT 242
T L + +L L +LS N I +L L ++ L G QL P L
Sbjct: 237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296
Query: 243 KLEFLNLSTNRFSSL---IPESLGNL 265
L LN+S N+ ++L + S+GNL
Sbjct: 297 YLRVLNVSGNQLTTLEESVFHSVGNL 322
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 37/258 (14%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
L+NL +L + +N + L+ +L +L L +G N + L+SL L L +
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 62 NLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERV-------IVGGNHFRGPI 114
NL+ SIP + + ++ L H L N R+ + +R+ I +
Sbjct: 163 NLT-SIPTEALSHLHGLIVLRLRH----LNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217
Query: 115 PKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLST 174
P CL NL +S+ N+ A + L FL++S N +ST
Sbjct: 218 PNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN--------------PIST 262
Query: 175 LNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHL 234
+ SM + L L E L + P F LN L L + GNQL
Sbjct: 263 IEGSM----------LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312
Query: 235 PSEIGSLTKLEFLNLSTN 252
S S+ LE L L +N
Sbjct: 313 ESVFHSVGNLETLILDSN 330
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 78/201 (38%), Gaps = 26/201 (12%)
Query: 100 LERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFF 159
LE + + N P N NL + L N ++ F NLT LDIS+N
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI- 116
Query: 160 GEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNS 219
+ L+ ++ LE+G+ N +V + F LNS
Sbjct: 117 ------------VILLDYMFQDLYNLKSLEVGD-----------NDLVYISHRAFSGLNS 153
Query: 220 LTKLILRGNQLIGHLPSE-IGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQF 278
L +L L L +P+E + L L L L +++ S L +L L++S + +
Sbjct: 154 LEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 279 IQELPKELGKLVQLSELELSH 299
+ + + L+ L ++H
Sbjct: 213 LDTMTPNCLYGLNLTSLSITH 233
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 82/199 (41%), Gaps = 37/199 (18%)
Query: 423 FDAKYCIGSGRHGSVY--RAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
+ + +G G G V + ++ +E AVK S Q D++ E++ L ++ H
Sbjct: 28 YKGQRVLGKGSFGEVILCKDKITGQE-CAVKVI-SKRQVKQKTDKESLLREVQLLKQLDH 85
Query: 481 RNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISS--------------- 525
NI+K Y F + L+ E G L + + E+D +
Sbjct: 86 PNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKN 145
Query: 526 ---------KNVLLDLEHKA---HVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-----Y 568
+N+LL+ + K + DFG++ + S +GT Y+AP+ Y
Sbjct: 146 KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEA-SKKMKDKIGTAYYIAPEVLHGTY 204
Query: 569 RKKCDVYSFRVLALEVIKG 587
+KCDV+S V+ ++ G
Sbjct: 205 DEKCDVWSTGVILYILLSG 223
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 28/186 (15%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ +F IG G +G VY+A + E +A+KK ++ + EI L ++
Sbjct: 2 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKEL 59
Query: 479 RHRNIVKFYGFCSHARHSILIYEYL----KRGSLATNLS--------------------- 513
H NIVK L++E+L K+ A+ L+
Sbjct: 60 NHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLSFC 119
Query: 514 NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKCD 573
+ D+ +N+L++ E ++DFG+A+ ++ V T Y AP+ C
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCK 179
Query: 574 VYSFRV 579
YS V
Sbjct: 180 YYSTAV 185
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 37/192 (19%)
Query: 423 FDAKYCIGSGRHGSVY--RAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
+ + +G G G V + ++ +E AVK S Q D++ E++ L ++ H
Sbjct: 52 YKGQRVLGKGSFGEVILCKDKITGQE-CAVKVI-SKRQVKQKTDKESLLREVQLLKQLDH 109
Query: 481 RNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISS--------------- 525
NI+K Y F + L+ E G L + + E+D +
Sbjct: 110 PNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKN 169
Query: 526 ---------KNVLLDLEHKA---HVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-----Y 568
+N+LL+ + K + DFG++ + S +GT Y+AP+ Y
Sbjct: 170 KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEA-SKKMKDKIGTAYYIAPEVLHGTY 228
Query: 569 RKKCDVYSFRVL 580
+KCDV+S V+
Sbjct: 229 DEKCDVWSTGVI 240
>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632
pdb|2GNL|A Chain A, Pka Threefold Mutant Model Of Rho-Kinase With Inhibitor H-
1152p
Length = 350
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIKVADFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 82/199 (41%), Gaps = 37/199 (18%)
Query: 423 FDAKYCIGSGRHGSVY--RAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
+ + +G G G V + ++ +E AVK S Q D++ E++ L ++ H
Sbjct: 51 YKGQRVLGKGSFGEVILCKDKITGQE-CAVKVI-SKRQVKQKTDKESLLREVQLLKQLDH 108
Query: 481 RNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISS--------------- 525
NI+K Y F + L+ E G L + + E+D +
Sbjct: 109 PNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKN 168
Query: 526 ---------KNVLLDLEHKA---HVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-----Y 568
+N+LL+ + K + DFG++ + S +GT Y+AP+ Y
Sbjct: 169 KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEA-SKKMKDKIGTAYYIAPEVLHGTY 227
Query: 569 RKKCDVYSFRVLALEVIKG 587
+KCDV+S V+ ++ G
Sbjct: 228 DEKCDVWSTGVILYILLSG 246
>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With
Compound 1, Atp-Gs And Mg2p
pdb|3EQD|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Atp-Gs
And Mg2p
pdb|3EQF|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With K252a
And Mg2p
pdb|3EQG|A Chain A, X-ray Structure Of The Human Mitogen-activated Protein
Kinase Kinase 1 (mek1) In A Ternary Complex With Pd, Adp
And Mg2p
pdb|3EQH|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With U0126,
Adp And Mg2p
pdb|3EQI|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Adp And
Mg2p
Length = 360
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 92/221 (41%), Gaps = 46/221 (20%)
Query: 421 NDFDAKYCIGSGRHGSVYR-AELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
+DF+ +G+G G V++ + PS +A K + + + A + + E++ L +
Sbjct: 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHECN 89
Query: 480 HRNIVKFYG-FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL----------------- 521
IV FYG F S SI + E++ GSL L E
Sbjct: 90 SPYIVGFYGAFYSDGEISICM-EHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLR 148
Query: 522 --------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
D+ N+L++ + + DFG++ L +N + VGT Y++P+
Sbjct: 149 EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN--SFVGTRSYMSPERLQGTH 206
Query: 568 YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRL 608
Y + D++S + +E+ G++P +P P + L
Sbjct: 207 YSVQSDIWSMGLSLVEMAVGRYP-------IPPPDAKELEL 240
>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp
pdb|1Q62|A Chain A, Pka Double Mutant Model Of Pkb
Length = 350
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+++D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLMIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy)
Quinolin-4-Yloxy)benzofuran-3-Carboxamide)
pdb|4AG8|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Axitinib (Ag-013736)
(N-Methyl-2-(3-((E)-2-Pyridin-2-
Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-Benzamide)
Length = 316
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 94/247 (38%), Gaps = 67/247 (27%)
Query: 463 ADQKEFFAEIEALTKIRHR-NIVKFYGFCSHARHSIL-IYEYLKRGSLATNLSND----- 515
++ + +E++ L I H N+V G C+ ++ I E+ K G+L+T L +
Sbjct: 72 SEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFV 131
Query: 516 ---AAAEEL--------------------------------DISSKNVLLDLEHKAHVSD 540
A E+L D++++N+LL ++ + D
Sbjct: 132 PYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICD 191
Query: 541 FGIAK--FLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRG 592
FG+A+ + PD +++AP+ Y + DV+SF VL E+
Sbjct: 192 FGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI-------- 243
Query: 593 FVSSILPSPSVINMRLDEMLDPRLPPPS----PDVQGKLISIMEVAFSCLDVSPESRPTM 648
F P P V ++DE RL + PD + + C P RPT
Sbjct: 244 FSLGASPYPGV---KIDEEFCRRLKEGTRMRAPDYTTP--EMYQTMLDCWHGEPSQRPTF 298
Query: 649 QTITQQL 655
+ + L
Sbjct: 299 SELVEHL 305
>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridyl-Pyrimidine Benzimidazole Inhibitor
Length = 314
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 94/247 (38%), Gaps = 67/247 (27%)
Query: 463 ADQKEFFAEIEALTKIRHR-NIVKFYGFCSHARHSIL-IYEYLKRGSLATNLSND----- 515
++ + +E++ L I H N+V G C+ ++ I E+ K G+L+T L +
Sbjct: 63 SEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFV 122
Query: 516 ---AAAEEL--------------------------------DISSKNVLLDLEHKAHVSD 540
A E+L D++++N+LL ++ + D
Sbjct: 123 PYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICD 182
Query: 541 FGIAK--FLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRG 592
FG+A+ + PD +++AP+ Y + DV+SF VL E+
Sbjct: 183 FGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI-------- 234
Query: 593 FVSSILPSPSVINMRLDEMLDPRLPP----PSPDVQGKLISIMEVAFSCLDVSPESRPTM 648
F P P V ++DE RL +PD + + C P RPT
Sbjct: 235 FSLGASPYPGV---KIDEEFCRRLKEGTRMRAPDYTTP--EMYQTMLDCWHGEPSQRPTF 289
Query: 649 QTITQQL 655
+ + L
Sbjct: 290 SELVEHL 296
>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With
Y- 27632
Length = 350
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIKVADFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+++D + V+DFG+AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLMIDQQGYIKVTDFGLAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|3B2T|A Chain A, Structure Of Phosphotransferase
pdb|3B2T|B Chain B, Structure Of Phosphotransferase
Length = 311
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 109/290 (37%), Gaps = 82/290 (28%)
Query: 429 IGSGRHGSVYRAEL-------PSKEF-LAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P + +AVK ++D +E+E + I +
Sbjct: 30 LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGK 86
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLS-------------NDAAAEEL----- 521
H+NI+ G C+ +I EY +G+L L N E++
Sbjct: 87 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 146
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ + ++DFG+A+ D +N
Sbjct: 147 VSCTYQLARGMEYLASQKCIHRDLTARNVLVTENNVMKIADFGLAR----DINNIDYYKK 202
Query: 560 T------YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR 607
T +++AP+ Y + DV+SF VL E+ F P P +
Sbjct: 203 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI--------FTLGGSPYPGIPVEE 254
Query: 608 LDEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L ++L R+ P+ + +L +M C P RPT + + + L
Sbjct: 255 LFKLLKEGHRMDKPA-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 300
>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase
pdb|2GNH|A Chain A, Pka Five Fold Mutant Model Of Rho-Kinase With H1152p
pdb|2GNI|A Chain A, Pka Fivefold Mutant Model Of Rho-Kinase With Inhibitor
Fasudil (Ha1077)
Length = 350
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIKVADFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 28/186 (15%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ +F IG G +G VY+A + E +A+KK ++ + EI L ++
Sbjct: 2 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKEL 59
Query: 479 RHRNIVKFYGFCSHARHSILIYEY----LKRGSLATNLS--------------------- 513
H NIVK L++E+ LK+ A+ L+
Sbjct: 60 NHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 514 NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKCD 573
+ D+ +N+L++ E ++DFG+A+ ++ V T Y AP+ C
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCK 179
Query: 574 VYSFRV 579
YS V
Sbjct: 180 YYSTAV 185
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 28/186 (15%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ +F IG G +G VY+A + E +A+KK ++ + EI L ++
Sbjct: 1 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKEL 58
Query: 479 RHRNIVKFYGFCSHARHSILIYEY----LKRGSLATNLS--------------------- 513
H NIVK L++E+ LK+ A+ L+
Sbjct: 59 NHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 514 NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKCD 573
+ D+ +N+L++ E ++DFG+A+ ++ V T Y AP+ C
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCK 178
Query: 574 VYSFRV 579
YS V
Sbjct: 179 YYSTAV 184
>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Jnj- 7706621
pdb|3AMB|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Vx- 680
Length = 351
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 147 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIKVADFGFAKRVK--G 194
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 195 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
pdb|1S9I|B Chain B, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
Length = 354
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 39/203 (19%)
Query: 421 NDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
+DF+ +G+G G V + + PS +A K + + + A + + E++ L +
Sbjct: 16 DDFERISELGAGNGGVVTKVQHRPSGLIMARKLIHLEI---KPAIRNQIIRELQVLHECN 72
Query: 480 HRNIVKFYG-FCSHARHSILIYEYLKRGSLATNLSN-DAAAEEL---------------- 521
IV FYG F S SI + E++ GSL L EE+
Sbjct: 73 SPYIVGFYGAFYSDGEISICM-EHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLR 131
Query: 522 --------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
D+ N+L++ + + DFG++ L +N + VGT Y+AP+
Sbjct: 132 EKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN--SFVGTRSYMAPERLQGTH 189
Query: 568 YRKKCDVYSFRVLALEVIKGKHP 590
Y + D++S + +E+ G++P
Sbjct: 190 YSVQSDIWSMGLSLVELAVGRYP 212
>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1
Length = 327
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 36/203 (17%)
Query: 423 FDAKYCIGSGRHGSVYRAE----LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
F+ +G G +G V++ + + A+K + D AE L ++
Sbjct: 19 FELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEV 78
Query: 479 RHRNIVKF-YGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE----------------- 520
+H IV Y F + + LI EYL G L L + E
Sbjct: 79 KHPFIVDLIYAFQTGGK-LYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHL 137
Query: 521 -------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
D+ +N++L+ + ++DFG+ K D + GT Y+AP+
Sbjct: 138 HQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHXFCGTIEYMAPEILMRSG 197
Query: 568 YRKKCDVYSFRVLALEVIKGKHP 590
+ + D +S L +++ G P
Sbjct: 198 HNRAVDWWSLGALMYDMLTGAPP 220
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 28/186 (15%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ +F IG G +G VY+A + E +A+KK ++ + EI L ++
Sbjct: 6 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKEL 63
Query: 479 RHRNIVKFYGFCSHARHSILIYEY----LKRGSLATNLS--------------------- 513
H NIVK L++E+ LK+ A+ L+
Sbjct: 64 NHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 123
Query: 514 NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKCD 573
+ D+ +N+L++ E ++DFG+A+ ++ V T Y AP+ C
Sbjct: 124 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCK 183
Query: 574 VYSFRV 579
YS V
Sbjct: 184 YYSTAV 189
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 214 FGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDL 273
F KL +L +L+L NQL LT L +L L N+ SL L L LDL
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL 164
Query: 274 SKYQFIQELPKEL-GKLVQLSELELSHNFLGREIPSQI 310
Q +Q LP+ + KL QL +L L+ N L + +P +
Sbjct: 165 DNNQ-LQSLPEGVFDKLTQLKQLSLNDNQL-KSVPDGV 200
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 216 KLNSLTKLILRGNQLIGHLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS 274
+L +LT LIL GNQL LP+ + LT L+ L L N+ SL L L YL L
Sbjct: 83 ELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLY 141
Query: 275 KYQFIQELPKEL-GKLVQLSELELSHNFL 302
Q +Q LPK + KL L+ L+L +N L
Sbjct: 142 HNQ-LQSLPKGVFDKLTNLTRLDLDNNQL 169
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFE 60
LTNL L L N L L L +L +L L NQ + SLP V L++L YL+L+
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYH 142
Query: 61 NNLSGSIPPSVGNLM--LTVLALENNHF 86
N L S+P V + + LT L L+NN
Sbjct: 143 NQLQ-SLPKGVFDKLTNLTRLDLDNNQL 169
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFE 60
LTNL L+L N L L L +L +L L NQ + SLP V L+ L+ L L +
Sbjct: 132 LTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLND 190
Query: 61 NNLSGSIPPSVGNLM--LTVLALENNHF 86
N L S+P V + + LT + L NN +
Sbjct: 191 NQLK-SVPDGVFDRLTSLTHIWLLNNPW 217
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 167 GKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILR 226
G P L TL++S N + +S+PL L L D+S N + L L +L L+
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 227 GNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL 257
GN+L P + KLE L+L+ N + L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLTEL 163
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 167 GKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILR 226
G P L TL++S N + +S+PL L L D+S N + L L +L L+
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 227 GNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL 257
GN+L P + KLE L+L+ N + L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 167 GKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILR 226
G P L TL++S N + +S+PL L L D+S N + L L +L L+
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 227 GNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL 257
GN+L P + KLE L+L+ N + L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
pdb|3RI1|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
Length = 313
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 109/290 (37%), Gaps = 82/290 (28%)
Query: 429 IGSGRHGSVYRAEL-------PSKEF-LAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P + +AVK ++D +E+E + I +
Sbjct: 32 LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGK 88
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLS-------------NDAAAEEL----- 521
H+NI+ G C+ +I EY +G+L L N E++
Sbjct: 89 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 148
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ + ++DFG+A+ D +N
Sbjct: 149 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLAR----DINNIDYYKK 204
Query: 560 T------YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR 607
T +++AP+ Y + DV+SF VL E+ F P P +
Sbjct: 205 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI--------FTLGGSPYPGIPVEE 256
Query: 608 LDEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L ++L R+ P+ + +L +M C P RPT + + + L
Sbjct: 257 LFKLLKEGHRMDKPA-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 302
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 101/258 (39%), Gaps = 44/258 (17%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G+ VYRA L +A+KK D A + + EI+ L ++ H N++K+Y
Sbjct: 40 IGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKA-RADCIKEIDLLKQLNHPNVIKYY 98
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-------------------------- 521
++ E G L+ + + + L
Sbjct: 99 ASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVM 158
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCD 573
DI NV + + D G+ +F ++ +LVGT Y++P+ Y K D
Sbjct: 159 HRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSD 218
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEV 633
++S L E+ + P F + S+ ++++ P P PS +L ++ +
Sbjct: 219 IWSLGCLLYEMAALQSP--FYGDKMNLYSLCK-KIEQCDYP--PLPSDHYSEELRQLVNM 273
Query: 634 AFSCLDVSPESRPTMQTI 651
C++ PE RP + +
Sbjct: 274 ---CINPDPEKRPDVTYV 288
>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2
With A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 318
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 94/247 (38%), Gaps = 67/247 (27%)
Query: 463 ADQKEFFAEIEALTKIRHR-NIVKFYGFCSHARHSIL-IYEYLKRGSLATNLSND----- 515
++ + +E++ L I H N+V G C+ ++ I E+ K G+L+T L +
Sbjct: 74 SEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFV 133
Query: 516 ---AAAEEL--------------------------------DISSKNVLLDLEHKAHVSD 540
A E+L D++++N+LL ++ + D
Sbjct: 134 PYKEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICD 193
Query: 541 FGIAK--FLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRG 592
FG+A+ + PD +++AP+ Y + DV+SF VL E+
Sbjct: 194 FGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI-------- 245
Query: 593 FVSSILPSPSVINMRLDEMLDPRLPPPS----PDVQGKLISIMEVAFSCLDVSPESRPTM 648
F P P V ++DE RL + PD + + C P RPT
Sbjct: 246 FSLGASPYPGV---KIDEEFCRRLKEGTRMRAPDYTTP--EMYQTMLDCWHGEPSQRPTF 300
Query: 649 QTITQQL 655
+ + L
Sbjct: 301 SELVEHL 307
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 28/187 (14%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
++ +F IG G +G VY+A + E +A+KK ++ + EI L +
Sbjct: 5 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 62
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYL----KRGSLATNLS-------------------- 513
+ H NIVK L++E+L K+ A+ L+
Sbjct: 63 LNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 122
Query: 514 -NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKC 572
+ D+ +N+L++ E ++DFG+A+ + V T Y AP+ C
Sbjct: 123 CHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGC 182
Query: 573 DVYSFRV 579
YS V
Sbjct: 183 KYYSTAV 189
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 167 GKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILR 226
G P L TL++S N + +S+PL L L D+S N + L L +L L+
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 227 GNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL 257
GN+L P + KLE L+L+ N + L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With
Compound A
Length = 356
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 25/146 (17%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAK--FLKPDSSNWSALVGTYRYVAPD------YRKKCD 573
D++++N+LL ++ + DFG+A+ + PD +++AP+ Y + D
Sbjct: 216 DLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSD 275
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS----PDVQGKLIS 629
V+SF VL E+ F P P V ++DE RL + PD
Sbjct: 276 VWSFGVLLWEI--------FSLGASPYPGV---KIDEEFCRRLKEGTRMRAPDYTTP--E 322
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+ + C P RPT + + L
Sbjct: 323 MYQTMLDCWHGEPSQRPTFSELVEHL 348
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
pdb|1OEC|A Chain A, Fgfr2 Kinase Domain
Length = 316
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 109/290 (37%), Gaps = 82/290 (28%)
Query: 429 IGSGRHGSVYRAEL-------PSKEF-LAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P + +AVK ++D +E+E + I +
Sbjct: 35 LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGK 91
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLS-------------NDAAAEEL----- 521
H+NI+ G C+ +I EY +G+L L N E++
Sbjct: 92 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 151
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ + ++DFG+A+ D +N
Sbjct: 152 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLAR----DINNIDYYKK 207
Query: 560 T------YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR 607
T +++AP+ Y + DV+SF VL E+ F P P +
Sbjct: 208 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI--------FTLGGSPYPGIPVEE 259
Query: 608 LDEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L ++L R+ P+ + +L +M C P RPT + + + L
Sbjct: 260 LFKLLKEGHRMDKPA-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 305
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 167 GKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILR 226
G P L TL++S N + +S+PL L L D+S N + L L +L L+
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 227 GNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL 257
GN+L P + KLE L+L+ N + L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 25/146 (17%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAK--FLKPDSSNWSALVGTYRYVAPD------YRKKCD 573
D++++N+LL ++ + DFG+A+ + PD +++AP+ Y + D
Sbjct: 169 DLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSD 228
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS----PDVQGKLIS 629
V+SF VL E+ F P P V ++DE RL + PD
Sbjct: 229 VWSFGVLLWEI--------FSLGASPYPGV---KIDEEFCRRLKEGTRMRAPDYTTP--E 275
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+ + C P RPT + + L
Sbjct: 276 MYQTMLDCWHGEPSQRPTFSELVEHL 301
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 167 GKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILR 226
G P L TL++S N + +S+PL L L D+S N + L L +L L+
Sbjct: 75 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 227 GNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL 257
GN+L P + KLE L+L+ N + L
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLTEL 164
>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|2P2I|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|3EFL|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
pdb|3EFL|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
Length = 314
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 94/247 (38%), Gaps = 67/247 (27%)
Query: 463 ADQKEFFAEIEALTKIRHR-NIVKFYGFCSHARHSIL-IYEYLKRGSLATNLSND----- 515
++ + +E++ L I H N+V G C+ ++ I E+ K G+L+T L +
Sbjct: 63 SEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFV 122
Query: 516 ---AAAEEL--------------------------------DISSKNVLLDLEHKAHVSD 540
A E+L D++++N+LL ++ + D
Sbjct: 123 PYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICD 182
Query: 541 FGIAKFL--KPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRG 592
FG+A+ + PD +++AP+ Y + DV+SF VL E+
Sbjct: 183 FGLARDIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI-------- 234
Query: 593 FVSSILPSPSVINMRLDEMLDPRLPP----PSPDVQGKLISIMEVAFSCLDVSPESRPTM 648
F P P V ++DE RL +PD + + C P RPT
Sbjct: 235 FSLGASPYPGV---KIDEEFCRRLKEGTRMRAPDYTTP--EMYQTMLDCWHGEPSQRPTF 289
Query: 649 QTITQQL 655
+ + L
Sbjct: 290 SELVEHL 296
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 28/187 (14%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
++ +F IG G +G VY+A + E +A+KK ++ + EI L +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 61
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYL----KRGSLATNLS-------------------- 513
+ H NIVK L++E+L K+ A+ L+
Sbjct: 62 LNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 121
Query: 514 -NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKC 572
+ D+ +N+L++ E ++DFG+A+ + V T Y AP+ C
Sbjct: 122 CHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGC 181
Query: 573 DVYSFRV 579
YS V
Sbjct: 182 KYYSTAV 188
>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A
Novel Pyrrolopyrimidine Inhibitor
Length = 359
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 25/146 (17%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAK--FLKPDSSNWSALVGTYRYVAPD------YRKKCD 573
D++++N+LL ++ + DFG+A+ + PD +++AP+ Y + D
Sbjct: 218 DLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSD 277
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPP----PSPDVQGKLIS 629
V+SF VL E+ F P P V ++DE RL +PD
Sbjct: 278 VWSFGVLLWEI--------FSLGASPYPGV---KIDEEFCRRLKEGTRMRAPDYTTP--E 324
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+ + C P RPT + + L
Sbjct: 325 MYQTMLDCWHGEPSQRPTFSELVEHL 350
>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka
C-Subunit:amp-Pnp:mg2+ Complex
Length = 350
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+++D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLIIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIIISKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDV|A Chain A, Structure Of Pka-Pkb Chimera Complexed With A-443654
pdb|2UVX|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 7-Azaindole
pdb|2UW4|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
2-(4-(5-Methyl- 1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW7|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|4AXA|A Chain A, Structure Of Pka-pkb Chimera Complexed With
(1s)-2-amino-1-(
4-chlorophenyl)-1-(4-(1h-pyrazol-4-yl)phenyl)ethan-1-ol
Length = 351
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+++D + V+DFG AK +K
Sbjct: 147 YAAQIVLTFEYLHSLDLIYR----------DLKPENLMIDQQGYIKVTDFGFAKRVK--G 194
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 195 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridinyl-Triazine Inhibitor
pdb|2QU5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzimidazole Inhibitor
pdb|2QU6|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|2QU6|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|3B8Q|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8Q|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|2RL5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A 2,3-Dihydro-1,4-Benzoxazine Inhibitor
pdb|3BE2|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzamide Inhibitor
pdb|3CP9|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CP9|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPB|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPB|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPC|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPC|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3DTW|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
pdb|3DTW|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
Length = 314
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 94/247 (38%), Gaps = 67/247 (27%)
Query: 463 ADQKEFFAEIEALTKIRHR-NIVKFYGFCSHARHSIL-IYEYLKRGSLATNLSND----- 515
++ + +E++ L I H N+V G C+ ++ I E+ K G+L+T L +
Sbjct: 63 SEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFV 122
Query: 516 ---AAAEEL--------------------------------DISSKNVLLDLEHKAHVSD 540
A E+L D++++N+LL ++ + D
Sbjct: 123 PYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICD 182
Query: 541 FGIAKFL--KPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRG 592
FG+A+ + PD +++AP+ Y + DV+SF VL E+
Sbjct: 183 FGLARDIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI-------- 234
Query: 593 FVSSILPSPSVINMRLDEMLDPRLPP----PSPDVQGKLISIMEVAFSCLDVSPESRPTM 648
F P P V ++DE RL +PD + + C P RPT
Sbjct: 235 FSLGASPYPGV---KIDEEFCRRLKEGTRMRAPDYTTP--EMYQTMLDCWHGEPSQRPTF 289
Query: 649 QTITQQL 655
+ + L
Sbjct: 290 SELVEHL 296
>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
Length = 351
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+++D + V+DFG AK +K
Sbjct: 147 YAAQIVLTFEYLHSLDLIYR----------DLKPENLMIDQQGYIKVTDFGFAKRVK--G 194
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 195 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h-
Purin-6-yl)-benzyl)-amine
pdb|2UVZ|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
C-Phenyl-C-(4-( 9h-Purin-6-Yl)-Phenyl)-Methylamine
pdb|2UW0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 6-(4-(4-(4-
Chloro-Phenyl)-Piperidin-4-Yl)-Phenyl)-9h-Purine
pdb|2UW3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 5-Methyl-4-
Phenyl-1h-Pyrazole
pdb|2UW5|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (R)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (S)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW8|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 2-(4-Chloro-
Phenyl)-2-Phenyl-Ethylamine
pdb|2VNW|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)methanamine
pdb|2VNY|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)amine
pdb|2VO3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
pdb|2VO6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-
Chlorobenzyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Ylamine
Length = 351
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+++D + V+DFG AK +K
Sbjct: 147 YAAQIVLTFEYLHSLDLIYR----------DLKPENLMIDQQGYIKVTDFGFAKRVK--G 194
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 195 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 28/187 (14%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
++ +F IG G +G VY+A + E +A+KK ++ + EI L +
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 59
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYL----KRGSLATNLS-------------------- 513
+ H NIVK L++E+L K+ A+ L+
Sbjct: 60 LNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 119
Query: 514 -NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKC 572
+ D+ +N+L++ E ++DFG+A+ + V T Y AP+ C
Sbjct: 120 CHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGC 179
Query: 573 DVYSFRV 579
YS V
Sbjct: 180 KYYSTAV 186
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 28/187 (14%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
++ +F IG G +G VY+A + E +A+KK ++ + EI L +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 61
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYL----KRGSLATNLS-------------------- 513
+ H NIVK L++E+L K+ A+ L+
Sbjct: 62 LNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 121
Query: 514 -NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKC 572
+ D+ +N+L++ E ++DFG+A+ + V T Y AP+ C
Sbjct: 122 CHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGC 181
Query: 573 DVYSFRV 579
YS V
Sbjct: 182 KYYSTAV 188
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 28/187 (14%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
++ +F IG G +G VY+A + E +A+KK ++ + EI L +
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 60
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYL----KRGSLATNLS-------------------- 513
+ H NIVK L++E+L K+ A+ L+
Sbjct: 61 LNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 120
Query: 514 -NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKC 572
+ D+ +N+L++ E ++DFG+A+ + V T Y AP+ C
Sbjct: 121 CHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGC 180
Query: 573 DVYSFRV 579
YS V
Sbjct: 181 KYYSTAV 187
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 73/190 (38%), Gaps = 34/190 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
++ +F IG G +G VY+A + E +A+KK ++ + EI L +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 61
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAA------------------- 518
+ H NIVK L++E+L S+ DA+A
Sbjct: 62 LNHPNIVKLLDVIHTENKLYLVFEFL---SMDLKKFMDASALTGIPLPLIKSYLFQLLQG 118
Query: 519 ---------EELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYR 569
D+ +N+L++ E ++DFG+A+ + V T Y AP+
Sbjct: 119 LAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEIL 178
Query: 570 KKCDVYSFRV 579
C YS V
Sbjct: 179 LGCKYYSTAV 188
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 103/268 (38%), Gaps = 53/268 (19%)
Query: 429 IGSGRHGSVYRAEL--PSKEFLAVK-KFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK 485
+G G G V R E PS + ++V K P Q +F E+ A+ + HRN+++
Sbjct: 20 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 79
Query: 486 FYGFCSHARHSILIYEYLKRGSLATNLSNDAA--------------AEEL---------- 521
YG ++ E GSL L AE +
Sbjct: 80 LYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIH 138
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR-----YVAPD------YR 569
D++++N+LL + DFG+ + L + ++ ++ +R + AP+ +
Sbjct: 139 RDLAARNLLLATRDLVKIGDFGLMRALPQNDDHY--VMQEHRKVPFAWCAPESLKTRTFS 196
Query: 570 KKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
D + F V E+ G+ P I + S I ++D+ + RLP P Q
Sbjct: 197 HASDTWMFGVTLWEMFTYGQEP-----WIGLNGSQILHKIDKEGE-RLPRPEDCPQ---- 246
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQLL 656
I V C PE RPT + LL
Sbjct: 247 DIYNVMVQCWAHKPEDRPTFVALRDFLL 274
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 28/177 (15%)
Query: 429 IGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G VY+A + E +A+KK ++ + EI L ++ H NIVK
Sbjct: 10 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 67
Query: 488 GFCSHARHSILIYEY----LKRGSLATNLS---------------------NDAAAEELD 522
L++E+ LK+ A+ L+ + D
Sbjct: 68 DVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRD 127
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKCDVYSFRV 579
+ +N+L++ E ++DFG+A+ ++ V T Y AP+ C YS V
Sbjct: 128 LKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAV 184
>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
pdb|1SZM|B Chain B, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
Length = 350
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+++D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLMIDQQGYIKVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 28/187 (14%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
++ +F IG G +G VY+A + E +A+KK ++ + EI L +
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 58
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYL----KRGSLATNLS-------------------- 513
+ H NIVK L++E+L K+ A+ L+
Sbjct: 59 LNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 118
Query: 514 -NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKC 572
+ D+ +N+L++ E ++DFG+A+ + V T Y AP+ C
Sbjct: 119 CHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGC 178
Query: 573 DVYSFRV 579
YS V
Sbjct: 179 KYYSTAV 185
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 80/207 (38%), Gaps = 33/207 (15%)
Query: 416 IIRAINDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEA 474
I I DF +G G VYRAE + + +A+K + Q+ E++
Sbjct: 6 IGEKIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQR-VQNEVKI 64
Query: 475 LTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN------DAAAEEL------- 521
+++H +I++ Y + + + L+ E G + L N + A
Sbjct: 65 HCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITG 124
Query: 522 ------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYR 569
D++ N+LL ++DFG+A LK L GT Y++P+
Sbjct: 125 MLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIA 184
Query: 570 KK------CDVYSFRVLALEVIKGKHP 590
+ DV+S + ++ G+ P
Sbjct: 185 TRSAHGLESDVWSLGCMFYTLLIGRPP 211
>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel
4-amino-furo[2,3-d]pyrimidine
Length = 316
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 94/247 (38%), Gaps = 67/247 (27%)
Query: 463 ADQKEFFAEIEALTKIRHR-NIVKFYGFCSHARHSIL-IYEYLKRGSLATNLSND----- 515
++ + +E++ L I H N+V G C+ ++ I E+ K G+L+T L +
Sbjct: 72 SEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFV 131
Query: 516 ---AAAEEL--------------------------------DISSKNVLLDLEHKAHVSD 540
A E+L D++++N+LL ++ + D
Sbjct: 132 PYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICD 191
Query: 541 FGIAKFL--KPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRG 592
FG+A+ + PD +++AP+ Y + DV+SF VL E+
Sbjct: 192 FGLARDIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI-------- 243
Query: 593 FVSSILPSPSVINMRLDEMLDPRLPPPS----PDVQGKLISIMEVAFSCLDVSPESRPTM 648
F P P V ++DE RL + PD + + C P RPT
Sbjct: 244 FSLGASPYPGV---KIDEEFCRRLKEGTRMRAPDYTTP--EMYQTMLDCWHGEPSQRPTF 298
Query: 649 QTITQQL 655
+ + L
Sbjct: 299 SELVEHL 305
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 73/190 (38%), Gaps = 34/190 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
++ +F IG G +G VY+A + E +A+KK ++ + EI L +
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 59
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAA------------------- 518
+ H NIVK L++E+L S+ DA+A
Sbjct: 60 LNHPNIVKLLDVIHTENKLYLVFEFL---SMDLKKFMDASALTGIPLPLIKSYLFQLLQG 116
Query: 519 ---------EELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYR 569
D+ +N+L++ E ++DFG+A+ + V T Y AP+
Sbjct: 117 LAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEIL 176
Query: 570 KKCDVYSFRV 579
C YS V
Sbjct: 177 LGCKYYSTAV 186
>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb
Length = 350
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+++D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLMIDQQGYIKVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 28/187 (14%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
++ +F IG G +G VY+A + E +A+KK ++ + EI L +
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 58
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYL----KRGSLATNLS-------------------- 513
+ H NIVK L++E+L K+ A+ L+
Sbjct: 59 LNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 118
Query: 514 -NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKC 572
+ D+ +N+L++ E ++DFG+A+ + V T Y AP+ C
Sbjct: 119 CHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGC 178
Query: 573 DVYSFRV 579
YS V
Sbjct: 179 KYYSTAV 185
>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With
Quinoline-Thiadiazole- Thiophene Inhibitor
Length = 302
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 102/247 (41%), Gaps = 47/247 (19%)
Query: 446 EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFC-SHARHSI-LIYEYL 503
E +AVK + + K+ EI+ L + H +I+K+ G C S+ L+ EY+
Sbjct: 44 EMVAVKALKADCGPQHRSGWKQ---EIDILRTLYHEHIIKYKGCCEDQGEKSLQLVMEYV 100
Query: 504 KRGSLATNLSNDAA--------AEEL---------------DISSKNVLLDLEHKAHVSD 540
GSL L + A+++ +++++NVLLD + + D
Sbjct: 101 PLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHSQHYIHRNLAARNVLLDNDRLVKIGD 160
Query: 541 FGIAKFLKPDSSNWSALV----GTYRYVAPDYRKK------CDVYSFRVLALEVI----- 585
FG+AK + P+ + + + AP+ K+ DV+SF V E++
Sbjct: 161 FGLAKAV-PEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDS 219
Query: 586 KGKHPRGFVSSI-LPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPES 644
P F+ I + + +RL E+L+ P PD + + +C +
Sbjct: 220 SQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCP--CEVYHLMKNCWETEASF 277
Query: 645 RPTMQTI 651
RPT + +
Sbjct: 278 RPTFENL 284
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 28/187 (14%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
++ +F IG G +G VY+A + E +A+KK ++ + EI L +
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 60
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYL----KRGSLATNLS-------------------- 513
+ H NIVK L++E+L K+ A+ L+
Sbjct: 61 LNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 120
Query: 514 -NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKC 572
+ D+ +N+L++ E ++DFG+A+ + V T Y AP+ C
Sbjct: 121 CHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGC 180
Query: 573 DVYSFRV 579
YS V
Sbjct: 181 KYYSTAV 187
>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9M|B Chain B, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9N|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 27
Length = 351
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+++D + V+DFG AK +K
Sbjct: 147 YAAQIVLTFEYLHSLDLIYR----------DLKPENLMIDQQGYIKVTDFGFAKRVK--G 194
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL E+ G P
Sbjct: 195 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 73/190 (38%), Gaps = 34/190 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
++ +F IG G +G VY+A + E +A+KK ++ + EI L +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 61
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAA------------------- 518
+ H NIVK L++E+L S+ DA+A
Sbjct: 62 LNHPNIVKLLDVIHTENKLYLVFEFL---SMDLKDFMDASALTGIPLPLIKSYLFQLLQG 118
Query: 519 ---------EELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYR 569
D+ +N+L++ E ++DFG+A+ + V T Y AP+
Sbjct: 119 LAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEIL 178
Query: 570 KKCDVYSFRV 579
C YS V
Sbjct: 179 LGCKYYSTAV 188
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 28/187 (14%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
++ +F IG G +G VY+A + E +A+KK ++ + EI L +
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 58
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYL----KRGSLATNLS-------------------- 513
+ H NIVK L++E+L K+ A+ L+
Sbjct: 59 LNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 118
Query: 514 -NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKC 572
+ D+ +N+L++ E ++DFG+A+ + V T Y AP+ C
Sbjct: 119 CHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGC 178
Query: 573 DVYSFRV 579
YS V
Sbjct: 179 KYYSTAV 185
>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit
Of Camp- Dependent Protein Kinase
Length = 350
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAP------DYRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEYLAPAIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6
Length = 302
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 103/249 (41%), Gaps = 47/249 (18%)
Query: 444 SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFC-SHARHSI-LIYE 501
+ E +AVK + + K+ EI+ L + H +I+K+ G C S+ L+ E
Sbjct: 42 TGEMVAVKALKADCGPQHRSGWKQ---EIDILRTLYHEHIIKYKGCCEDQGEKSLQLVME 98
Query: 502 YLKRGSLATNLSNDAA--------AEEL---------------DISSKNVLLDLEHKAHV 538
Y+ GSL L + A+++ +++++NVLLD + +
Sbjct: 99 YVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQHYIHRNLAARNVLLDNDRLVKI 158
Query: 539 SDFGIAKFLKPDSSNWSALV----GTYRYVAPDYRKK------CDVYSFRVLALEVI--- 585
DFG+AK + P+ + + + AP+ K+ DV+SF V E++
Sbjct: 159 GDFGLAKAV-PEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHC 217
Query: 586 --KGKHPRGFVSSI-LPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSP 642
P F+ I + + +RL E+L+ P PD + + +C +
Sbjct: 218 DSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCP--CEVYHLMKNCWETEA 275
Query: 643 ESRPTMQTI 651
RPT + +
Sbjct: 276 SFRPTFENL 284
>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent
Protein Kinase Reveals Unexpected Apoenzyme Conformation
pdb|1SYK|B Chain B, Crystal Structure Of E230q Mutant Of Camp-Dependent
Protein Kinase Reveals Unexpected Apoenzyme Conformation
Length = 350
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT Y+AP+ Y K D ++ VL ++ G P
Sbjct: 194 RTWX-LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYQMAAGYPP 237
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 73/190 (38%), Gaps = 34/190 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
++ +F IG G +G VY+A + E +A+KK ++ + EI L +
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 60
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAA------------------- 518
+ H NIVK L++E+L S+ DA+A
Sbjct: 61 LNHPNIVKLLDVIHTENKLYLVFEFL---SMDLKDFMDASALTGIPLPLIKSYLFQLLQG 117
Query: 519 ---------EELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYR 569
D+ +N+L++ E ++DFG+A+ + V T Y AP+
Sbjct: 118 LAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEIL 177
Query: 570 KKCDVYSFRV 579
C YS V
Sbjct: 178 LGCKYYSTAV 187
>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNG|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNL|A Chain A, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|1UNL|B Chain B, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|3O0G|A Chain A, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
pdb|3O0G|B Chain B, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
Length = 292
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 34/194 (17%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G+V++A+ + E +A+K+ L D EI L +++H+NIV+ +
Sbjct: 10 IGEGTYGTVFKAKNRETHEIVALKRVR--LDDDDEGVPSSALREICLLKELKHKNIVRLH 67
Query: 488 GFCSHARHSILIYEY----LKR------GSLATNLSNDAAAEEL--------------DI 523
+ L++E+ LK+ G L + + L D+
Sbjct: 68 DVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDL 127
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKCDVYS 576
+N+L++ + +++FG+A+ +SA V T Y PD Y D++S
Sbjct: 128 KPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWS 187
Query: 577 FRVLALEVIKGKHP 590
+ E+ P
Sbjct: 188 AGCIFAELANAGRP 201
>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain
pdb|4HZR|B Chain B, Crystal Structure Of Ack1 Kinase Domain
Length = 277
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 103/268 (38%), Gaps = 53/268 (19%)
Query: 429 IGSGRHGSVYRAEL--PSKEFLAVK-KFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK 485
+G G G V R E PS + ++V K P Q +F E+ A+ + HRN+++
Sbjct: 20 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 79
Query: 486 FYGFCSHARHSILIYEYLKRGSLATNLSNDAA--------------AEEL---------- 521
YG ++ E GSL L AE +
Sbjct: 80 LYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIH 138
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR-----YVAPD------YR 569
D++++N+LL + DFG+ + L + ++ ++ +R + AP+ +
Sbjct: 139 RDLAARNLLLATRDLVKIGDFGLMRALPQNDDHY--VMQEHRKVPFAWCAPESLKTRTFS 196
Query: 570 KKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
D + F V E+ G+ P I + S I ++D+ + RLP P Q
Sbjct: 197 HASDTWMFGVTLWEMFTYGQEP-----WIGLNGSQILHKIDKEGE-RLPRPEDCPQ---- 246
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQLL 656
I V C PE RPT + LL
Sbjct: 247 DIYNVMVQCWAHKPEDRPTFVALRDFLL 274
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 33/200 (16%)
Query: 119 RNCPNLVRISLEGNNM----RGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLST 174
+NCP++ S + + + RG GI N +L++ +NN A + L
Sbjct: 44 QNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEV 103
Query: 175 LNVSMNNITRSIPLEIG---NLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL- 230
L + N+I + +E+G L++LN +L N + F L+ L +L LR N +
Sbjct: 104 LQLGRNSIRQ---IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160
Query: 231 ------IGHLPS----EIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQ 280
+PS ++G L KLE+ +S F L L YL+L I+
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEY--ISEGAFEG--------LFNLKYLNLGMCN-IK 209
Query: 281 ELPKELGKLVQLSELELSHN 300
++P L LV L ELE+S N
Sbjct: 210 DMPN-LTPLVGLEELEMSGN 228
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 100/258 (38%), Gaps = 54/258 (20%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN 62
+N R L+L +N + + +L L L LG N R + L+SL L LF+N
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN- 133
Query: 63 LSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN-C 121
LTV+ + LR RN +E IP N
Sbjct: 134 ------------WLTVIPSGAFEYLSKLRELWLRNNPIES-----------IPSYAFNRV 170
Query: 122 PNLVRISLEGNNMRGTISE-AFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNV-SM 179
P+L+R+ L ISE AF NL +L++ G C N+ M
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL-------------GMC------NIKDM 211
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
N+T + LE E ++S NH P F L+SL KL + +Q+ +
Sbjct: 212 PNLTPLVGLE--------ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD 263
Query: 240 SLTKLEFLNLSTNRFSSL 257
L L LNL+ N SSL
Sbjct: 264 GLASLVELNLAHNNLSSL 281
>pdb|4G3D|A Chain A, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
pdb|4G3D|B Chain B, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
pdb|4G3D|D Chain D, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
pdb|4G3D|E Chain E, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
Length = 371
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 91/241 (37%), Gaps = 50/241 (20%)
Query: 388 NREGQRSPQNSQGLLSILSFKGKFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF 447
+RE ++++G+L K DY E ++ + +G G G V+R E F
Sbjct: 62 SREPSPKTEDNEGVLLTEKLK-PVDY-EYREEVHWATHQLRLGRGSFGEVHRMEDKQTGF 119
Query: 448 -LAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRG 506
AVKK ++ +E A LT R IV YG + E L+ G
Sbjct: 120 QCAVKKVRL-----EVFRAEELMA-CAGLTSPR---IVPLYGAVREGPWVNIFMELLEGG 170
Query: 507 SLATNLSNDAAAEE------------------------LDISSKNVLL--DLEHKAHVSD 540
SL + E D+ + NVLL D H A + D
Sbjct: 171 SLGQLVKEQGCLPEDRALYYLGQALEGLEYLHSRRILHGDVKADNVLLSSDGSHAA-LCD 229
Query: 541 FGIAKFLKPDSSNWSALVGTY-----RYVAPDY------RKKCDVYSFRVLALEVIKGKH 589
FG A L+PD S L G Y ++AP+ K DV+S + L ++ G H
Sbjct: 230 FGHAVCLQPDGLGKSLLTGDYIPGTETHMAPEVVLGRSCDAKVDVWSSCCMMLHMLNGCH 289
Query: 590 P 590
P
Sbjct: 290 P 290
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 28/187 (14%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
++ +F IG G +G VY+A + E +A+KK ++ + EI L +
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 59
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYL----KRGSLATNLS-------------------- 513
+ H NIVK L++E+L K+ A+ L+
Sbjct: 60 LNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 119
Query: 514 -NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKC 572
+ D+ +N+L++ E ++DFG+A+ + V T Y AP+ C
Sbjct: 120 CHSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGC 179
Query: 573 DVYSFRV 579
YS V
Sbjct: 180 KYYSTAV 186
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 28/187 (14%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
++ +F IG G +G VY+A + E +A+KK ++ + EI L +
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 60
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYL----KRGSLATNLS-------------------- 513
+ H NIVK L++E+L K+ A+ L+
Sbjct: 61 LNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 120
Query: 514 -NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKC 572
+ D+ +N+L++ E ++DFG+A+ + V T Y AP+ C
Sbjct: 121 CHSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGC 180
Query: 573 DVYSFRV 579
YS V
Sbjct: 181 KYYSTAV 187
>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Back Pocket Binder
Length = 368
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 25/146 (17%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAK--FLKPDSSNWSALVGTYRYVAPD------YRKKCD 573
D++++N+LL ++ + DFG+A+ + PD +++AP+ Y + D
Sbjct: 225 DLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSD 284
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS----PDVQGKLIS 629
V+SF VL E+ F P P V ++DE RL + PD
Sbjct: 285 VWSFGVLLWEI--------FSLGASPYPGV---KIDEEFCRRLKEGTRMRAPDYTTP--E 331
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+ + C P RPT + + L
Sbjct: 332 MYQTMLDCWHGEPSQRPTFSELVEHL 357
>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U46|B Chain B, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U4D|A Chain A, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U4D|B Chain B, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U54|B Chain B, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 103/268 (38%), Gaps = 53/268 (19%)
Query: 429 IGSGRHGSVYRAEL--PSKEFLAVK-KFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK 485
+G G G V R E PS + ++V K P Q +F E+ A+ + HRN+++
Sbjct: 26 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 85
Query: 486 FYGFCSHARHSILIYEYLKRGSLATNLSNDAA--------------AEEL---------- 521
YG ++ E GSL L AE +
Sbjct: 86 LYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIH 144
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR-----YVAPD------YR 569
D++++N+LL + DFG+ + L + ++ ++ +R + AP+ +
Sbjct: 145 RDLAARNLLLATRDLVKIGDFGLMRALPQNDDHY--VMQEHRKVPFAWCAPESLKTRTFS 202
Query: 570 KKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
D + F V E+ G+ P I + S I ++D+ + RLP P Q
Sbjct: 203 HASDTWMFGVTLWEMFTYGQEP-----WIGLNGSQILHKIDKEGE-RLPRPEDCPQ---- 252
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQLL 656
I V C PE RPT + LL
Sbjct: 253 DIYNVMVQCWAHKPEDRPTFVALRDFLL 280
>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
pdb|2PSQ|B Chain B, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
Length = 370
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 109/290 (37%), Gaps = 82/290 (28%)
Query: 429 IGSGRHGSVYRAEL-------PSKEF-LAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P + +AVK ++D +E+E + I +
Sbjct: 89 LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGK 145
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLS-------------NDAAAEEL----- 521
H+NI+ G C+ +I EY +G+L L N E++
Sbjct: 146 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 205
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ + ++DFG+A+ D +N
Sbjct: 206 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLAR----DINNIDYYKK 261
Query: 560 T------YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR 607
T +++AP+ Y + DV+SF VL E+ F P P +
Sbjct: 262 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI--------FTLGGSPYPGIPVEE 313
Query: 608 LDEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L ++L R+ P+ + +L +M C P RPT + + + L
Sbjct: 314 LFKLLKEGHRMDKPA-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 359
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 28/187 (14%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
++ +F IG G +G VY+A + E +A+KK ++ + EI L +
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 58
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYL----KRGSLATNLS-------------------- 513
+ H NIVK L++E+L K+ A+ L+
Sbjct: 59 LNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 118
Query: 514 -NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKC 572
+ D+ +N+L++ E ++DFG+A+ + V T Y AP+ C
Sbjct: 119 CHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGC 178
Query: 573 DVYSFRV 579
YS V
Sbjct: 179 KYYSTAV 185
>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
pdb|1Y6B|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
Length = 366
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 25/146 (17%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAK--FLKPDSSNWSALVGTYRYVAPD------YRKKCD 573
D++++N+LL ++ + DFG+A+ + PD +++AP+ Y + D
Sbjct: 223 DLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSD 282
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPP----PSPDVQGKLIS 629
V+SF VL E+ F P P V ++DE RL +PD
Sbjct: 283 VWSFGVLLWEI--------FSLGASPYPGV---KIDEEFCRRLKEGTRMRAPDYTTP--E 329
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+ + C P RPT + + L
Sbjct: 330 MYQTMLDCWHGEPSQRPTFSELVEHL 355
>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor
Cis-3-[8-amino-1-(4-
Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
Length = 273
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 103/268 (38%), Gaps = 53/268 (19%)
Query: 429 IGSGRHGSVYRAEL--PSKEFLAVK-KFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK 485
+G G G V R E PS + ++V K P Q +F E+ A+ + HRN+++
Sbjct: 16 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 75
Query: 486 FYGFCSHARHSILIYEYLKRGSLATNLSNDAA--------------AEEL---------- 521
YG ++ E GSL L AE +
Sbjct: 76 LYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIH 134
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR-----YVAPD------YR 569
D++++N+LL + DFG+ + L + ++ ++ +R + AP+ +
Sbjct: 135 RDLAARNLLLATRDLVKIGDFGLMRALPQNDDHY--VMQEHRKVPFAWCAPESLKTRTFS 192
Query: 570 KKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
D + F V E+ G+ P I + S I ++D+ + RLP P Q
Sbjct: 193 HASDTWMFGVTLWEMFTYGQEP-----WIGLNGSQILHKIDKEGE-RLPRPEDCPQ---- 242
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQLL 656
I V C PE RPT + LL
Sbjct: 243 DIYNVMVQCWAHKPEDRPTFVALRDFLL 270
>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
In With Amp-Pnp
pdb|3KN5|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
In With Amp-Pnp
pdb|3KN6|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
pdb|3KN6|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
Length = 325
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 34/154 (22%)
Query: 471 EIEALTKIR-HRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------- 508
EI AL H NIVK + H+ L+ E L G L
Sbjct: 55 EITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKKKKHFSETEASYIMRK 114
Query: 509 ---ATNLSNDAAAEELDISSKNVLLDLEH---KAHVSDFGIAKFLKPDSSNWSALVGTYR 562
A + +D D+ +N+L E+ + + DFG A+ PD+ T
Sbjct: 115 LVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLH 174
Query: 563 YVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
Y AP+ Y + CD++S V+ ++ G+ P
Sbjct: 175 YAAPELLNQNGYDESCDLWSLGVILYTMLSGQVP 208
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 73/186 (39%), Gaps = 28/186 (15%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ +F IG G +G VY+A + E +A+KK ++ + EI L ++
Sbjct: 1 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKEL 58
Query: 479 RHRNIVKFYGFCSHARHSILIYEY----LKRGSLATNLS--------------------- 513
H NIVK L++E+ LK+ A+ L+
Sbjct: 59 NHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 514 NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKCD 573
+ D+ +N+L++ E ++DFG+A+ + V T Y AP+ C
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCK 178
Query: 574 VYSFRV 579
YS V
Sbjct: 179 YYSTAV 184
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 73/186 (39%), Gaps = 28/186 (15%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ +F IG G +G VY+A + E +A+KK ++ + EI L ++
Sbjct: 3 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKEL 60
Query: 479 RHRNIVKFYGFCSHARHSILIYEY----LKRGSLATNLS--------------------- 513
H NIVK L++E+ LK+ A+ L+
Sbjct: 61 NHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 120
Query: 514 NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKCD 573
+ D+ +N+L++ E ++DFG+A+ + V T Y AP+ C
Sbjct: 121 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCK 180
Query: 574 VYSFRV 579
YS V
Sbjct: 181 YYSTAV 186
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 73/186 (39%), Gaps = 28/186 (15%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ +F IG G +G VY+A + E +A+KK ++ + EI L ++
Sbjct: 1 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKEL 58
Query: 479 RHRNIVKFYGFCSHARHSILIYEY----LKRGSLATNLS--------------------- 513
H NIVK L++E+ LK+ A+ L+
Sbjct: 59 NHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 514 NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKCD 573
+ D+ +N+L++ E ++DFG+A+ + V T Y AP+ C
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCK 178
Query: 574 VYSFRV 579
YS V
Sbjct: 179 YYSTAV 184
>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea
Inhibitor
Length = 316
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 25/146 (17%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFL--KPDSSNWSALVGTYRYVAPD------YRKKCD 573
D++++N+LL ++ + DFG+A+ + PD +++AP+ Y + D
Sbjct: 173 DLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSD 232
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPP----PSPDVQGKLIS 629
V+SF VL E+ F P P V ++DE RL +PD
Sbjct: 233 VWSFGVLLWEI--------FSLGASPYPGV---KIDEEFCRRLKEGTRMRAPDYTTP--E 279
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+ + C P RPT + + L
Sbjct: 280 MYQTMLDCWHGEPSQRPTFSELVEHL 305
>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95
pdb|3EQP|A Chain A, Crystal Structure Of Ack1 With Compound T95
pdb|3EQR|A Chain A, Crystal Structure Of Ack1 With Compound T74
pdb|3EQR|B Chain B, Crystal Structure Of Ack1 With Compound T74
Length = 276
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 103/268 (38%), Gaps = 53/268 (19%)
Query: 429 IGSGRHGSVYRAEL--PSKEFLAVK-KFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK 485
+G G G V R E PS + ++V K P Q +F E+ A+ + HRN+++
Sbjct: 16 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 75
Query: 486 FYGFCSHARHSILIYEYLKRGSLATNLSNDAA--------------AEEL---------- 521
YG ++ E GSL L AE +
Sbjct: 76 LYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIH 134
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR-----YVAPD------YR 569
D++++N+LL + DFG+ + L + ++ ++ +R + AP+ +
Sbjct: 135 RDLAARNLLLATRDLVKIGDFGLMRALPQNDDHY--VMQEHRKVPFAWCAPESLKTRTFS 192
Query: 570 KKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
D + F V E+ G+ P I + S I ++D+ + RLP P Q
Sbjct: 193 HASDTWMFGVTLWEMFTYGQEP-----WIGLNGSQILHKIDKEGE-RLPRPEDCPQ---- 242
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQLL 656
I V C PE RPT + LL
Sbjct: 243 DIYNVMVQCWAHKPEDRPTFVALRDFLL 270
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 179 MNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKE--FGKLNSLTKLILRGNQLIGHLPS 236
+ I R IPL L LN+ +L G+I + FG+L L KL L+ NQL G P+
Sbjct: 20 LKEIPRDIPLHTTEL-LLNDNEL------GRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72
Query: 237 EIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELE 296
+ ++ L L N+ + + L +L L+L Q +P L L+ L
Sbjct: 73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132
Query: 297 LSHN 300
L+ N
Sbjct: 133 LASN 136
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Query: 120 NCPNLVRISLEGNNM----RGTISEAFGIYLNLTFLDISDNNFFGEIASN--WGKCPKLS 173
+CP + EG + RG I L+ T L ++DN G I+S+ +G+ P L
Sbjct: 1 DCPAMCHC--EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNEL-GRISSDGLFGRLPHLV 57
Query: 174 TLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGH 233
L + N +T P S + E L N I K F L+ L L L NQ+
Sbjct: 58 KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117
Query: 234 LPSEIGSLTKLEFLNLSTNRFS 255
+P L L LNL++N F+
Sbjct: 118 MPGSFEHLNSLTSLNLASNPFN 139
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 28/187 (14%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
++ +F IG G +G VY+A + E +A+KK ++ + EI L +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 61
Query: 478 IRHRNIVKFYGFCSHARHSILIYEY----LKRGSLATNLS-------------------- 513
+ H NIVK L++E+ LK+ A+ L+
Sbjct: 62 LNHPNIVKLLDVIHTENKLYLVFEHVDQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 121
Query: 514 -NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKC 572
+ D+ +N+L++ E ++DFG+A+ + V T Y AP+ C
Sbjct: 122 CHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGC 181
Query: 573 DVYSFRV 579
YS V
Sbjct: 182 KYYSTAV 188
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/272 (19%), Positives = 108/272 (39%), Gaps = 58/272 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKE-------FLAVKKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + +++ SP + +I D+ A +
Sbjct: 49 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIMELREATSPKANKEILDEAYVMASV 108
Query: 473 EALTKIRHRNIVKFYGFCSHARHSIL--------IYEYLKRG----------------SL 508
+ + ++ + G C + ++ + +Y++ +
Sbjct: 109 D------NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 162
Query: 509 ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAP 566
N D D++++NVL+ ++DFG+AK L + + A G +++A
Sbjct: 163 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 222
Query: 567 D------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP P
Sbjct: 223 ESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQP 275
Query: 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
I + + C + +SRP + +
Sbjct: 276 PICT----IDVYMIMVKCWMIDADSRPKFREL 303
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 72/187 (38%), Gaps = 28/187 (14%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
++ +F IG G +G VY+A + E +A+KK ++ + EI L +
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 58
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYLKR-------GSLATNLSNDAAAEEL--------- 521
+ H NIVK L++E+L + S T + L
Sbjct: 59 LNHPNIVKLLDVIHTENKLYLVFEFLHQDLKDFMDASALTGIPLPLIKSYLFQLLQGLAF 118
Query: 522 ---------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKC 572
D+ +N+L++ E ++DFG+A+ + V T Y AP+ C
Sbjct: 119 CHSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGC 178
Query: 573 DVYSFRV 579
YS V
Sbjct: 179 KYYSTAV 185
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 30/187 (16%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ +F IG G +G VY+A + E +A+KK ++ + EI L ++
Sbjct: 1 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKEL 58
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAE------------------- 519
H NIVK L++E++ + L T + A
Sbjct: 59 NHPNIVKLLDVIHTENKLYLVFEHVHQ-DLKTFMDASALTGIPLPLIKSYLFQLLQGLAF 117
Query: 520 -------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKC 572
D+ +N+L++ E ++DFG+A+ ++ V T Y AP+ C
Sbjct: 118 CHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGC 177
Query: 573 DVYSFRV 579
YS V
Sbjct: 178 KYYSTAV 184
>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 102/268 (38%), Gaps = 53/268 (19%)
Query: 429 IGSGRHGSVYRAEL--PSKEFLAVK-KFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK 485
+G G G V R E PS + ++V K P Q +F E+ A+ + HRN+++
Sbjct: 26 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 85
Query: 486 FYGFCSHARHSILIYEYLKRGSLATNLSNDAA--------------AEEL---------- 521
YG ++ E GSL L AE +
Sbjct: 86 LYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIH 144
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR-----YVAPD------YR 569
D++++N+LL + DFG+ + L + + ++ +R + AP+ +
Sbjct: 145 RDLAARNLLLATRDLVKIGDFGLMRALPQNDDH--XVMQEHRKVPFAWCAPESLKTRTFS 202
Query: 570 KKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
D + F V E+ G+ P I + S I ++D+ + RLP P Q
Sbjct: 203 HASDTWMFGVTLWEMFTYGQEP-----WIGLNGSQILHKIDKEGE-RLPRPEDCPQ---- 252
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQLL 656
I V C PE RPT + LL
Sbjct: 253 DIYNVMVQCWAHKPEDRPTFVALRDFLL 280
>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor
pdb|4EWH|A Chain A, Co-Crystal Structure Of Ack1 With Inhibitor
Length = 275
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 102/268 (38%), Gaps = 53/268 (19%)
Query: 429 IGSGRHGSVYRAEL--PSKEFLAVK-KFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK 485
+G G G V R E PS + ++V K P Q +F E+ A+ + HRN+++
Sbjct: 16 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 75
Query: 486 FYGFCSHARHSILIYEYLKRGSLATNLSNDAA--------------AEEL---------- 521
YG ++ E GSL L AE +
Sbjct: 76 LYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIH 134
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR-----YVAPD------YR 569
D++++N+LL + DFG+ + L + + ++ +R + AP+ +
Sbjct: 135 RDLAARNLLLATRDLVKIGDFGLMRALPQNDDH--XVMQEHRKVPFAWCAPESLKTRTFS 192
Query: 570 KKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
D + F V E+ G+ P I + S I ++D+ + RLP P Q
Sbjct: 193 HASDTWMFGVTLWEMFTYGQEP-----WIGLNGSQILHKIDKEGE-RLPRPEDCPQ---- 242
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQLL 656
I V C PE RPT + LL
Sbjct: 243 DIYNVMVQCWAHKPEDRPTFVALRDFLL 270
>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120
Length = 316
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 25/146 (17%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFL--KPDSSNWSALVGTYRYVAPD------YRKKCD 573
D++++N+LL ++ + DFG+A+ + PD +++AP+ Y + D
Sbjct: 173 DLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSD 232
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS----PDVQGKLIS 629
V+SF VL E+ F P P V ++DE RL + PD
Sbjct: 233 VWSFGVLLWEI--------FSLGASPYPGV---KIDEEFCRRLKEGTRMRAPDYTTP--E 279
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+ + C P RPT + + L
Sbjct: 280 MYQTMLDCWHGEPSQRPTFSELVEHL 305
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 119/300 (39%), Gaps = 85/300 (28%)
Query: 417 IRAINDFDAKYCIGSGRHGSVYRAE--LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEA 474
+R +DF+ +G G G V +A L S+ + A+KK ++++ +E+
Sbjct: 2 LRYASDFEEIAVLGQGAFGQVVKARNALDSR-YYAIKKIRHT--EEKLS---TILSEVML 55
Query: 475 LTKIRHRNIVKFYGFCSHARHSI-------------LIYEYLKRGSL-----ATNLSNDA 516
L + H+ +V++Y R+ + + EY + G+L + NL+
Sbjct: 56 LASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQR 115
Query: 517 AA---------EEL-----------DISSKNVLLDLEHKAHVSDFGIAK-------FLKP 549
E L D+ N+ +D + DFG+AK LK
Sbjct: 116 DEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKL 175
Query: 550 D-------SSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVS 595
D S N ++ +GT YVA + Y +K D+YS ++ E+I +P F +
Sbjct: 176 DSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMI---YP--FST 230
Query: 596 SILPSPSVINMRLDEMLDPRLPPPSPD----VQGKLISIMEVAFSCLDVSPESRPTMQTI 651
+ + +R + PP D V+ K+I ++ +D P RP +T+
Sbjct: 231 GMERVNILKKLR---SVSIEFPPDFDDNKMKVEKKIIRLL------IDHDPNKRPGARTL 281
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 41/200 (20%)
Query: 429 IGSGRHGSVY--RAELPSKE--FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+GSG +G V + +L E +KK + S+ A E+ L ++ H NI+
Sbjct: 12 LGSGAYGEVLLCKDKLTGAERAIKIIKKSSVTTTSNSGA----LLDEVAVLKQLDHPNIM 67
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNL-------SNDAAA-----------------EE 520
K Y F R+ L+ E + G L + DAA
Sbjct: 68 KLYEFFEDKRNYYLVMEVYRGGELFDEIILRQKFSEVDAAVIMKQVLSGTTYLHKHNIVH 127
Query: 521 LDISSKNVLLDLEHKA---HVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-----YRKKC 572
D+ +N+LL+ + + + DFG++ + +GT Y+AP+ Y +KC
Sbjct: 128 RDLKPENLLLESKSRDALIKIVDFGLSAHFEV-GGKMKERLGTAYYIAPEVLRKKYDEKC 186
Query: 573 DVYSFRVLALEVIKGKHPRG 592
DV+S V+ ++ G P G
Sbjct: 187 DVWSCGVILYILLCGYPPFG 206
>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk
Docking Partner
Length = 380
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 43/197 (21%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 50 VGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 107
Query: 488 GFCSHARHSILIYE--YLKRGSLATNLSNDAAAEEL------------------------ 521
+ AR S+ + YL + +L+N ++L
Sbjct: 108 DVFTPAR-SLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADI 166
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKK 571
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 167 IHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQT 223
Query: 572 CDVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 224 VDIWSVGCIMAELLTGR 240
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 79/199 (39%), Gaps = 35/199 (17%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ +F IG G +G VY+A + E +A+KK ++ + EI L ++
Sbjct: 9 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKEL 66
Query: 479 RHRNIVKFYGFCSHARHSILIYEY----LKRGSLATNLS--------------------- 513
H NIVK L++E+ LK+ A+ L+
Sbjct: 67 NHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 126
Query: 514 NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
+ D+ +N+L++ E ++DFG+A+ ++ V T Y AP+
Sbjct: 127 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGXK 186
Query: 568 -YRKKCDVYSFRVLALEVI 585
Y D++S + E++
Sbjct: 187 YYSTAVDIWSLGCIFAEMV 205
>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With
N-(4-chlorophenyl)-2-
((pyridin-4-ylmethyl)amino)benzamide
Length = 360
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 27/147 (18%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAK--FLKPDSSNWSALVGTYRYVAPD------YRKKCD 573
D++++N+LL + + DFG+A+ + PD +++AP+ Y K D
Sbjct: 224 DLAARNILLSENNVVKICDFGLARDIYKNPDYVRKGDTRLPLKWMAPESIFDKIYSTKSD 283
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSV-----INMRLDEMLDPRLPPPSPDVQGKLI 628
V+S+ VL E+ F P P V RL E + R P S
Sbjct: 284 VWSYGVLLWEI--------FSLGGSPYPGVQMDEDFCSRLREGMRMRAPEYSTP------ 329
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQL 655
I ++ C P+ RP + ++L
Sbjct: 330 EIYQIMLDCWHRDPKERPRFAELVEKL 356
>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|B Chain B, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|D Chain D, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
Length = 294
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 74/194 (38%), Gaps = 36/194 (18%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IG G G V ++ ++ +++ +P + D F EIE + + H NI++ Y
Sbjct: 34 IGRGSWGEV---KIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYE 90
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISS--KNVLLDLE--HKAHVS----- 539
L+ E G L + + E D + K+VL + HK +V+
Sbjct: 91 TFEDNTDIYLVMELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLK 150
Query: 540 ------------------DFGIAKFLKPDSSNWSALVGTYRYVAPD-----YRKKCDVYS 576
DFG+A KP VGT YV+P Y +CD +S
Sbjct: 151 PENFLFLTDSPDSPLKLIDFGLAARFKP-GKMMRTKVGTPYYVSPQVLEGLYGPECDEWS 209
Query: 577 FRVLALEVIKGKHP 590
V+ ++ G P
Sbjct: 210 AGVMMYVLLCGYPP 223
>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
pdb|2JC6|C Chain C, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
Length = 334
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 83/212 (39%), Gaps = 42/212 (19%)
Query: 414 VEIIRAINDFDAKYCIGSGRHGSVYRAELPSK-EFLAVKKFNSPLPSDQIADQKEFFA-E 471
E I+ I F+ K +G+G V AE + + AVK +P + ++ E
Sbjct: 17 AEDIKKI--FEFKETLGTGAFSEVVLAEEKATGKLFAVK----CIPKKALKGKESSIENE 70
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISS------ 525
I L KI+H NIV H L+ + + G L + E D S+
Sbjct: 71 IAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVL 130
Query: 526 ------------------KNVLL---DLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYV 564
+N+L D E K +SDFG++K ++ S GT YV
Sbjct: 131 DAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSK-MEGKGDVMSTACGTPGYV 189
Query: 565 APD------YRKKCDVYSFRVLALEVIKGKHP 590
AP+ Y K D +S V+A ++ G P
Sbjct: 190 APEVLAQKPYSKAVDCWSIGVIAYILLCGYPP 221
>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium
Dependent Protein Kinase Cgd7_1840 In Presence Of
Indirubin E804
Length = 277
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 74/194 (38%), Gaps = 36/194 (18%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IG G G V ++ ++ +++ +P + D F EIE + + H NI++ Y
Sbjct: 17 IGRGSWGEV---KIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYE 73
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISS--KNVLLDLE--HKAHVS----- 539
L+ E G L + + E D + K+VL + HK +V+
Sbjct: 74 TFEDNTDIYLVMELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLK 133
Query: 540 ------------------DFGIAKFLKPDSSNWSALVGTYRYVAPD-----YRKKCDVYS 576
DFG+A KP VGT YV+P Y +CD +S
Sbjct: 134 PENFLFLTDSPDSPLKLIDFGLAARFKP-GKMMRTKVGTPYYVSPQVLEGLYGPECDEWS 192
Query: 577 FRVLALEVIKGKHP 590
V+ ++ G P
Sbjct: 193 AGVMMYVLLCGYPP 206
>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
pdb|2Q0B|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 108/290 (37%), Gaps = 82/290 (28%)
Query: 429 IGSGRHGSVYRAEL-------PSKEF-LAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P + +AVK ++D +E+E + I +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGK 99
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLS-------------NDAAAEEL----- 521
H+NI+ G C+ +I Y +G+L L N E++
Sbjct: 100 HKNIINLLGACTQDGPLYVIVAYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 159
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ + ++DFG+A+ D +N
Sbjct: 160 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLAR----DINNIDYYKK 215
Query: 560 T------YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR 607
T +++AP+ Y + DV+SF VL E+ F P P +
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI--------FTLGGSPYPGIPVEE 267
Query: 608 LDEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L ++L R+ P+ + +L +M C P RPT + + + L
Sbjct: 268 LFKLLKEGHRMDKPA-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 313
>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655
pdb|1P38|A Chain A, The Structure Of The Map Kinase P38 At 2.1 Angstoms
Resolution
Length = 379
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 43/197 (21%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 49 VGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 106
Query: 488 GFCSHARHSILIYE--YLKRGSLATNLSNDAAAEEL------------------------ 521
+ AR S+ + YL + +L+N ++L
Sbjct: 107 DVFTPAR-SLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADI 165
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKK 571
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 166 IHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQT 222
Query: 572 CDVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 223 VDIWSVGCIMAELLTGR 239
>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From
Toxoplasma Gondii, 541.m00134, Kinase Domain
Length = 287
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 41/200 (20%)
Query: 429 IGSGRHGSVY--RAELPSKE--FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+GSG +G V + +L E +KK + S+ A E+ L ++ H NI+
Sbjct: 29 LGSGAYGEVLLCKDKLTGAERAIKIIKKSSVTTTSNSGA----LLDEVAVLKQLDHPNIM 84
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNL-------SNDAAA-----------------EE 520
K Y F R+ L+ E + G L + DAA
Sbjct: 85 KLYEFFEDKRNYYLVMEVYRGGELFDEIILRQKFSEVDAAVIMKQVLSGTTYLHKHNIVH 144
Query: 521 LDISSKNVLLDLEHK---AHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-----YRKKC 572
D+ +N+LL+ + + + DFG++ + +GT Y+AP+ Y +KC
Sbjct: 145 RDLKPENLLLESKSRDALIKIVDFGLSAHFEV-GGKMKERLGTAYYIAPEVLRKKYDEKC 203
Query: 573 DVYSFRVLALEVIKGKHPRG 592
DV+S V+ ++ G P G
Sbjct: 204 DVWSCGVILYILLCGYPPFG 223
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 106/273 (38%), Gaps = 60/273 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 18 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 77
Query: 473 EALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------------------------ 508
+ + ++ + G C + LI + + G L
Sbjct: 78 D------NPHVCRLLGICLTSTVQ-LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIA 130
Query: 509 -ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVA 565
N D D++++NVL+ ++DFG+AK L + + A G +++A
Sbjct: 131 KGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMA 190
Query: 566 PD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP
Sbjct: 191 LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQ 243
Query: 619 PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
P I + + C + +SRP + +
Sbjct: 244 PPICT----IDVYMIMVKCWMIDADSRPKFREL 272
>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195
Length = 365
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IGSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 35 IGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 92
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 93 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 152
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 153 HRDLKPSNLAVNEDXELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 209
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 210 DIWSVGCIMAELLTGR 225
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 7/174 (4%)
Query: 151 LDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKI 210
LD+S+N S+ +C L L ++ N I +L +L DLS N++
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 90
Query: 211 PKEFGKLNSLTKLILRGN--QLIGHLPSEIGSLTKLEFLNL-STNRFSSLIPESLGNLLK 267
F L+SLT L L GN + +G S LTKL+ L + + + F+ + + L
Sbjct: 91 SSWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 149
Query: 268 LHYLDLSKYQFIQELPKELGKLVQLSE--LELSHNFLGREIPSQIC-SMECCEV 318
L L++ PK L + +S L + + L EI + S+EC E+
Sbjct: 150 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 203
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 33/182 (18%)
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGK-CPKLSTLN 176
L+ C NL + L N + ++F +L LD+S N+ ++S+W K L+ LN
Sbjct: 46 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS-YNYLSNLSSSWFKPLSSLTFLN 104
Query: 177 VSMN------------NITRSIPLEIGNLST--------------LNEFDLSLNHIVGKI 210
+ N ++T+ L +GN+ T L E ++ + +
Sbjct: 105 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 164
Query: 211 PKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFL-----NLSTNRFSSLIPESLGNL 265
PK + +++ LIL Q I L + + +E L +L T FS L +L
Sbjct: 165 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 224
Query: 266 LK 267
+K
Sbjct: 225 IK 226
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 35/196 (17%)
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNW-GKCPKLSTLN 176
LR C NL + L+ + + +AF +L LD+SDN+ ++S+W G L LN
Sbjct: 72 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLN 130
Query: 177 VSMN------------NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLI 224
+ N N+T L IGN+ T +E + +I +F L SL +L
Sbjct: 131 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE--------IRRI--DFAGLTSLNELE 180
Query: 225 LRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLL-KLHYLD-----LSKYQF 278
++ L + + S+ + L L + S+ + E ++L + YL+ L+++QF
Sbjct: 181 IKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTNLARFQF 239
Query: 279 ----IQELPKELGKLV 290
+ E+ + KL
Sbjct: 240 SPLPVDEVSSPMKKLA 255
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 79/199 (39%), Gaps = 35/199 (17%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ +F IG G +G VY+A + E +A+KK ++ + EI L ++
Sbjct: 2 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKEL 59
Query: 479 RHRNIVKFYGFCSHARHSILIYEY----LKRGSLATNLS--------------------- 513
H NIVK L++E+ LK+ A+ L+
Sbjct: 60 NHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 514 NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
+ D+ +N+L++ E ++DFG+A+ ++ V T Y AP+
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGXK 179
Query: 568 -YRKKCDVYSFRVLALEVI 585
Y D++S + E++
Sbjct: 180 YYSTAVDIWSLGCIFAEMV 198
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 106/273 (38%), Gaps = 60/273 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 17 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 76
Query: 473 EALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------------------------ 508
+ + ++ + G C + LI + + G L
Sbjct: 77 D------NPHVCRLLGICLTSTVQ-LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIA 129
Query: 509 -ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVA 565
N D D++++NVL+ ++DFG+AK L + + A G +++A
Sbjct: 130 KGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMA 189
Query: 566 PD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP
Sbjct: 190 LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQ 242
Query: 619 PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
P I + + C + +SRP + +
Sbjct: 243 PPICT----IDVYMIMVKCWMIDADSRPKFREL 271
>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The
Murine Receptor Tyrosine Kinase Tyro3 (Sky)
Length = 323
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 101/277 (36%), Gaps = 64/277 (23%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIA--DQKEFFAEIEALTKIRHRNIVKF 486
+G G GSV A+L ++ VK L +D IA D +EF E + + H ++ K
Sbjct: 31 LGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKL 90
Query: 487 YGFCSHARHS------ILIYEYLKRGSLATNLSNDAAAE--------------------- 519
G +R ++I ++K G L L E
Sbjct: 91 VGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGM 150
Query: 520 ---------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS-----------SNWSALVG 559
D++++N +L + V+DFG+++ + W AL
Sbjct: 151 EYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALES 210
Query: 560 TYRYVAPDYRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618
+ Y DV++F V E++ +G+ P + + +I RL
Sbjct: 211 LADNL---YTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIG-------GNRLKQ 260
Query: 619 PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
P P+ ++ +M + C P+ RP+ + +L
Sbjct: 261 P-PECMEEVYDLM---YQCWSADPKQRPSFTCLRMEL 293
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 54/272 (19%), Positives = 109/272 (40%), Gaps = 58/272 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 22 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 81
Query: 473 EALTKIRHRNIVKFYGFCSHARHSIL--------IYEYLKR-----GSL----------- 508
+ + ++ + G C + ++ + +Y++ GS
Sbjct: 82 D------NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 135
Query: 509 ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAP 566
N D D++++NVL+ ++DFG+AK L + + A G +++A
Sbjct: 136 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 195
Query: 567 D------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP P
Sbjct: 196 ESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQP 248
Query: 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
I + + C + +SRP + +
Sbjct: 249 PICT----IDVYMIMVKCWMIDADSRPKFREL 276
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 54/272 (19%), Positives = 109/272 (40%), Gaps = 58/272 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 17 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 76
Query: 473 EALTKIRHRNIVKFYGFCSHARHSIL--------IYEYLKR-----GSL----------- 508
+ + ++ + G C + ++ + +Y++ GS
Sbjct: 77 D------NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 130
Query: 509 ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAP 566
N D D++++NVL+ ++DFG+AK L + + A G +++A
Sbjct: 131 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 190
Query: 567 D------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP P
Sbjct: 191 ESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQP 243
Query: 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
I + + C + +SRP + +
Sbjct: 244 PICT----IDVYMIMVKCWMIDADSRPKFREL 271
>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With
Inhibitor Pg-892579
pdb|2GTN|A Chain A, Mutated Map Kinase P38 (mus Musculus) In Complex With
Inhbitor Pg-951717
Length = 348
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 43/197 (21%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 26 VGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 83
Query: 488 GFCSHARHSILIYE--YLKRGSLATNLSNDAAAEEL------------------------ 521
+ AR S+ + YL + +L+N ++L
Sbjct: 84 DVFTPAR-SLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADI 142
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKK 571
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 143 IHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQT 199
Query: 572 CDVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 200 VDIWSVGCIMAELLTGR 216
>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
pdb|2PY3|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 108/290 (37%), Gaps = 82/290 (28%)
Query: 429 IGSGRHGSVYRAEL-------PSKEF-LAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P + +AVK ++D +E+E + I +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGK 99
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLS-------------NDAAAEEL----- 521
H+NI+ G C+ +I Y +G+L L N E++
Sbjct: 100 HKNIINLLGACTQDGPLYVIVGYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 159
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ + ++DFG+A+ D +N
Sbjct: 160 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLAR----DINNIDYYKK 215
Query: 560 T------YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR 607
T +++AP+ Y + DV+SF VL E+ F P P +
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI--------FTLGGSPYPGIPVEE 267
Query: 608 LDEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L ++L R+ P+ + +L +M C P RPT + + + L
Sbjct: 268 LFKLLKEGHRMDKPA-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 313
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 81/199 (40%), Gaps = 37/199 (18%)
Query: 423 FDAKYCIGSGRHGSVY--RAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
+ + +G G G V + ++ +E AVK S Q D++ E++ L ++ H
Sbjct: 28 YKGQRVLGKGSFGEVILCKDKITGQE-CAVKVI-SKRQVKQKTDKESLLREVQLLKQLDH 85
Query: 481 RNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISS--------------- 525
NI K Y F + L+ E G L + + E+D +
Sbjct: 86 PNIXKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYXHKN 145
Query: 526 ---------KNVLLDLEHKA---HVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-----Y 568
+N+LL+ + K + DFG++ + S +GT Y+AP+ Y
Sbjct: 146 KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEA-SKKXKDKIGTAYYIAPEVLHGTY 204
Query: 569 RKKCDVYSFRVLALEVIKG 587
+KCDV+S V+ ++ G
Sbjct: 205 DEKCDVWSTGVILYILLSG 223
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 106/273 (38%), Gaps = 60/273 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 19 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 78
Query: 473 EALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------------------------ 508
+ + ++ + G C + LI + + G L
Sbjct: 79 D------NPHVCRLLGICLTSTVQ-LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIA 131
Query: 509 -ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVA 565
N D D++++NVL+ ++DFG+AK L + + A G +++A
Sbjct: 132 KGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMA 191
Query: 566 PD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP
Sbjct: 192 LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQ 244
Query: 619 PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
P I + + C + +SRP + +
Sbjct: 245 PPICT----IDVYMIMVKCWMIDADSRPKFREL 273
>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In
Phosphorylated P38a And In Solution
Length = 370
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 43/197 (21%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 40 VGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 97
Query: 488 GFCSHARHSILIYE--YLKRGSLATNLSNDAAAEEL------------------------ 521
+ AR S+ + YL + +L+N ++L
Sbjct: 98 DVFTPAR-SLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADI 156
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKK 571
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 157 IHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQT 213
Query: 572 CDVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 214 VDIWSVGCIMAELLTGR 230
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 106/273 (38%), Gaps = 60/273 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 74
Query: 473 EALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------------------------ 508
+ + ++ + G C + LI + + G L
Sbjct: 75 D------NPHVCRLLGICLTSTVQ-LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIA 127
Query: 509 -ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVA 565
N D D++++NVL+ ++DFG+AK L + + A G +++A
Sbjct: 128 KGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMA 187
Query: 566 PD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP
Sbjct: 188 LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQ 240
Query: 619 PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
P I + + C + +SRP + +
Sbjct: 241 PPICT----IDVYMIMVKCWMIDADSRPKFREL 269
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 7/174 (4%)
Query: 151 LDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKI 210
LD+S+N S+ +C L L ++ N I +L +L DLS N++
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116
Query: 211 PKEFGKLNSLTKLILRGN--QLIGHLPSEIGSLTKLEFLNL-STNRFSSLIPESLGNLLK 267
F L+SLT L L GN + +G S LTKL+ L + + + F+ + + L
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175
Query: 268 LHYLDLSKYQFIQELPKELGKLVQLSE--LELSHNFLGREIPSQIC-SMECCEV 318
L L++ PK L + +S L + + L EI + S+EC E+
Sbjct: 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 96/231 (41%), Gaps = 44/231 (19%)
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGK-CPKLSTLN 176
L+ C NL + L N + ++F +L LD+S N+ ++S+W K L+ LN
Sbjct: 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS-YNYLSNLSSSWFKPLSSLTFLN 130
Query: 177 VSMN------------NITRSIPLEIGNLST--------------LNEFDLSLNHIVGKI 210
+ N ++T+ L +GN+ T L E ++ + +
Sbjct: 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190
Query: 211 PKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFL-----NLSTNRFSSLIPESLGNL 265
PK + +++ LIL Q I L + + +E L +L T FS L +L
Sbjct: 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250
Query: 266 LK------LHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQI 310
+K + D S +Q + K L ++ L ELE S N L + +P I
Sbjct: 251 IKKFTFRNVKITDESLFQVM----KLLNQISGLLELEFSRNQL-KSVPDGI 296
>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Nuclear Substrate Mef2a
pdb|1LEZ|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Activator Mkk3b
Length = 360
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 43/197 (21%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 30 VGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 87
Query: 488 GFCSHARHSILIYE--YLKRGSLATNLSNDAAAEEL------------------------ 521
+ AR S+ + YL + +L+N ++L
Sbjct: 88 DVFTPAR-SLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADI 146
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKK 571
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 147 IHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQT 203
Query: 572 CDVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 204 VDIWSVGCIMAELLTGR 220
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 52/272 (19%), Positives = 108/272 (39%), Gaps = 58/272 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 18 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 77
Query: 473 EALTKIRHRNIVKFYGFCSHARHSIL--------IYEYLKRG----------------SL 508
+ + ++ + G C + ++ + +Y++ +
Sbjct: 78 D------NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 131
Query: 509 ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAP 566
N D D++++NVL+ ++DFG+AK L + + A G +++A
Sbjct: 132 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 191
Query: 567 D------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP P
Sbjct: 192 ESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQP 244
Query: 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
I + + C + +SRP + +
Sbjct: 245 PICT----IDVYMIMVKCWMIDADSRPKFREL 272
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 73/186 (39%), Gaps = 28/186 (15%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ +F IG G +G VY+A + E +A+ K ++ + EI L ++
Sbjct: 2 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTA--IREISLLKEL 59
Query: 479 RHRNIVKFYGFCSHARHSILIYEYL----KRGSLATNLS--------------------- 513
H NIVK L++E+L K+ A+ L+
Sbjct: 60 NHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 514 NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKCD 573
+ D+ +N+L++ E ++DFG+A+ ++ V T Y AP+ C
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCK 179
Query: 574 VYSFRV 579
YS V
Sbjct: 180 YYSTAV 185
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 73/186 (39%), Gaps = 28/186 (15%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ +F IG G +G VY+A + E +A+ K ++ + EI L ++
Sbjct: 1 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTA--IREISLLKEL 58
Query: 479 RHRNIVKFYGFCSHARHSILIYEYL----KRGSLATNLS--------------------- 513
H NIVK L++E+L K+ A+ L+
Sbjct: 59 NHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 514 NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKCD 573
+ D+ +N+L++ E ++DFG+A+ ++ V T Y AP+ C
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCK 178
Query: 574 VYSFRV 579
YS V
Sbjct: 179 YYSTAV 184
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 54/272 (19%), Positives = 109/272 (40%), Gaps = 58/272 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 18 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 77
Query: 473 EALTKIRHRNIVKFYGFCSHARHSIL--------IYEYLKR-----GSL----------- 508
+ + ++ + G C + ++ + +Y++ GS
Sbjct: 78 D------NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 131
Query: 509 ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAP 566
N D D++++NVL+ ++DFG+AK L + + A G +++A
Sbjct: 132 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 191
Query: 567 D------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP P
Sbjct: 192 ESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQP 244
Query: 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
I + + C + +SRP + +
Sbjct: 245 PICT----IDVYMIMVKCWMIDADSRPKFREL 272
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 52/272 (19%), Positives = 108/272 (39%), Gaps = 58/272 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 21 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 80
Query: 473 EALTKIRHRNIVKFYGFCSHARHSIL--------IYEYLKRG----------------SL 508
+ + ++ + G C + ++ + +Y++ +
Sbjct: 81 D------NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 134
Query: 509 ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAP 566
N D D++++NVL+ ++DFG+AK L + + A G +++A
Sbjct: 135 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 194
Query: 567 D------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP P
Sbjct: 195 ESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQP 247
Query: 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
I + + C + +SRP + +
Sbjct: 248 PICT----IDVYMIMVKCWMIDADSRPKFREL 275
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 106/273 (38%), Gaps = 60/273 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 16 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 75
Query: 473 EALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------------------------ 508
+ + ++ + G C + LI + + G L
Sbjct: 76 D------NPHVCRLLGICLTSTVQ-LIMQLMPFGXLLDYVREHKDNIGSQYLLNWCVQIA 128
Query: 509 -ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVA 565
N D D++++NVL+ ++DFG+AK L + + A G +++A
Sbjct: 129 KGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMA 188
Query: 566 PD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP
Sbjct: 189 LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQ 241
Query: 619 PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
P I + + C + +SRP + +
Sbjct: 242 PPICT----IDVYMIMVKCWMIDADSRPKFREL 270
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 54/272 (19%), Positives = 109/272 (40%), Gaps = 58/272 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 12 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 71
Query: 473 EALTKIRHRNIVKFYGFCSHARHSIL--------IYEYLKR-----GSL----------- 508
+ + ++ + G C + ++ + +Y++ GS
Sbjct: 72 D------NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAE 125
Query: 509 ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAP 566
N D D++++NVL+ ++DFG+AK L + + A G +++A
Sbjct: 126 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 185
Query: 567 D------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP P
Sbjct: 186 ESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQP 238
Query: 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
I + + C + +SRP + +
Sbjct: 239 PICT----IDVYMIMVKCWMIDADSRPKFREL 266
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 35/196 (17%)
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNW-GKCPKLSTLN 176
LR C NL + L+ + + +AF +L LD+SDN+ ++S+W G L LN
Sbjct: 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLN 104
Query: 177 VSMN------------NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLI 224
+ N N+T L IGN+ T +E + +I +F L SL +L
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE--------IRRI--DFAGLTSLNELE 154
Query: 225 LRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLL-KLHYLD-----LSKYQF 278
++ L + + S+ + L L + S+ + E ++L + YL+ L+++QF
Sbjct: 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTNLARFQF 213
Query: 279 ----IQELPKELGKLV 290
+ E+ + KL
Sbjct: 214 SPLPVDEVSSPMKKLA 229
>pdb|4G3F|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase
(nik) Bound To A 2-(aminothiazoly)phenol (cmp2)
Length = 336
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 99/262 (37%), Gaps = 55/262 (20%)
Query: 371 SGCISVIAYVPIIWDQANREGQR---SPQNSQGLLSILSFKGKFDYVEIIRAINDFDAKY 427
SG +A + W + + QR ++++G+L K DY E ++ +
Sbjct: 7 SGQAHSLASLAKTWSSGSAKLQRLGPETEDNEGVLLTEKLK-PVDY-EYREEVHWMTHQP 64
Query: 428 CIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFF--AEIEALTKIRHRNIV 484
+G G G V+R + F AVKK + E F E+ A + IV
Sbjct: 65 RVGRGSFGEVHRMKDKQTGFQCAVKKV-----------RLEVFRVEELVACAGLSSPRIV 113
Query: 485 KFYGFCSHARHSILIYEYLKRGSLAT------NLSNDAAAEEL----------------- 521
YG + E L+ GSL L D A L
Sbjct: 114 PLYGAVREGPWVNIFMELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRRILH 173
Query: 522 -DISSKNVLLDLE-HKAHVSDFGIAKFLKPDSSNWSALVGTY-----RYVAPDY------ 568
D+ + NVLL + +A + DFG A L+PD S L G Y ++AP+
Sbjct: 174 GDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPC 233
Query: 569 RKKCDVYSFRVLALEVIKGKHP 590
K D++S + L ++ G HP
Sbjct: 234 DAKVDIWSSCCMMLHMLNGCHP 255
>pdb|4G3C|A Chain A, Crystal Structure Of Apo Murine Nf-kappab Inducing Kinase
(nik)
pdb|4G3C|B Chain B, Crystal Structure Of Apo Murine Nf-kappab Inducing Kinase
(nik)
pdb|4G3E|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase
(nik) Bound To A 6-alkynylindoline (cmp1)
pdb|4G3E|B Chain B, Crystal Structure Of Murine Nf-kappab Inducing Kinase
(nik) Bound To A 6-alkynylindoline (cmp1)
Length = 352
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 99/262 (37%), Gaps = 55/262 (20%)
Query: 371 SGCISVIAYVPIIWDQANREGQR---SPQNSQGLLSILSFKGKFDYVEIIRAINDFDAKY 427
SG +A + W + + QR ++++G+L K DY E ++ +
Sbjct: 23 SGQAHSLASLAKTWSSGSAKLQRLGPETEDNEGVLLTEKLK-PVDY-EYREEVHWMTHQP 80
Query: 428 CIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFF--AEIEALTKIRHRNIV 484
+G G G V+R + F AVKK + E F E+ A + IV
Sbjct: 81 RVGRGSFGEVHRMKDKQTGFQCAVKKV-----------RLEVFRVEELVACAGLSSPRIV 129
Query: 485 KFYGFCSHARHSILIYEYLKRGSLAT------NLSNDAAAEEL----------------- 521
YG + E L+ GSL L D A L
Sbjct: 130 PLYGAVREGPWVNIFMELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRRILH 189
Query: 522 -DISSKNVLLDLE-HKAHVSDFGIAKFLKPDSSNWSALVGTY-----RYVAPDY------ 568
D+ + NVLL + +A + DFG A L+PD S L G Y ++AP+
Sbjct: 190 GDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPC 249
Query: 569 RKKCDVYSFRVLALEVIKGKHP 590
K D++S + L ++ G HP
Sbjct: 250 DAKVDIWSSCCMMLHMLNGCHP 271
>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
pdb|3E93|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
Length = 371
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 41 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 98
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 99 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 158
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 159 HRDLKPSNLAVNEDXELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 215
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 216 DIWSVGCIMAELLTGR 231
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 106/273 (38%), Gaps = 60/273 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 16 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 75
Query: 473 EALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------------------------ 508
+ + ++ + G C + LI + + G L
Sbjct: 76 D------NPHVCRLLGICLTSTVQ-LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIA 128
Query: 509 -ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVA 565
N D D++++NVL+ ++DFG+AK L + + A G +++A
Sbjct: 129 KGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMA 188
Query: 566 PD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP
Sbjct: 189 LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQ 241
Query: 619 PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
P I + + C + +SRP + +
Sbjct: 242 PPICT----IDVYMIMVKCWMIDADSRPKFREL 270
>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydroquinolinone
pdb|1R3C|A Chain A, The Structure Of P38alpha C162s Mutant
pdb|2I0H|A Chain A, The Structure Of P38alpha In Complex With An
Arylpyridazinone
pdb|3GC7|A Chain A, The Structure Of P38alpha In Complex With A
Dihydroquinazolinone
pdb|3NEW|A Chain A, P38-Alpha Complexed With Compound 10
Length = 366
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 43/197 (21%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 36 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 93
Query: 488 GFCSHARHSILIYE--YLKRGSLATNLSNDAAAEEL------------------------ 521
+ AR S+ + YL + +L+N ++L
Sbjct: 94 DVFTPAR-SLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADI 152
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKK 571
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 153 IHRDLKPSNLAVNEDSELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQT 209
Query: 572 CDVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 210 VDIWSVGCIMAELLTGR 226
>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk
Docking Peptide
Length = 362
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 32 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 89
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 90 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 149
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 150 HRDLKPSNLAVNEDSELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 206
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 207 DIWSVGCIMAELLTGR 222
>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain
In Complex With A Monocyclic Pyrazolone Inhibitor
Length = 360
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 81/197 (41%), Gaps = 43/197 (21%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 30 VGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 87
Query: 488 GFCSHARHSILIYE--YLKRGSLATNLSNDAAAEEL------------------------ 521
+ AR S+ + YL + +L+N ++L
Sbjct: 88 DVFTPAR-SLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADI 146
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKK 571
D+ N+ ++ + + + DFG+A+ + V T Y AP+ Y +
Sbjct: 147 IHRDLKPSNLAVNEDCELKILDFGLARHT---DDEMAGFVATRWYRAPEIMLNWMHYNQT 203
Query: 572 CDVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 204 VDIWSVGCIMAELLTGR 220
>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
pdb|3IPH|A Chain A, Crystal Structure Of P38 In Complex With A Biphenylamide
Inhibitor
Length = 360
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 43/197 (21%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 30 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 87
Query: 488 GFCSHARHSILIYE--YLKRGSLATNLSNDAAAEEL------------------------ 521
+ AR S+ + YL + +L+N ++L
Sbjct: 88 DVFTPAR-SLEEFNDVYLVTHLMGADLNNIVKXQKLTDDHVQFLIYQILRGLKYIHSADI 146
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKK 571
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 147 IHRDLKPSNLAVNEDXELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQT 203
Query: 572 CDVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 204 VDIWSVGCIMAELLTGR 220
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 52/272 (19%), Positives = 108/272 (39%), Gaps = 58/272 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 74
Query: 473 EALTKIRHRNIVKFYGFCSHARHSIL--------IYEYLKRG----------------SL 508
+ + ++ + G C + ++ + +Y++ +
Sbjct: 75 D------NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 128
Query: 509 ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAP 566
N D D++++NVL+ ++DFG+AK L + + A G +++A
Sbjct: 129 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 188
Query: 567 D------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP P
Sbjct: 189 ESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQP 241
Query: 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
I + + C + +SRP + +
Sbjct: 242 PICT----IDVYMIMVKCWMIDADSRPKFREL 269
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 52/272 (19%), Positives = 108/272 (39%), Gaps = 58/272 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 74
Query: 473 EALTKIRHRNIVKFYGFCSHARHSIL--------IYEYLKRG----------------SL 508
+ + ++ + G C + ++ + +Y++ +
Sbjct: 75 D------NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 128
Query: 509 ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAP 566
N D D++++NVL+ ++DFG+AK L + + A G +++A
Sbjct: 129 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 188
Query: 567 D------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP P
Sbjct: 189 ESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQP 241
Query: 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
I + + C + +SRP + +
Sbjct: 242 PICT----IDVYMIMRKCWMIDADSRPKFREL 269
>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38)
Length = 360
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 81/197 (41%), Gaps = 43/197 (21%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 30 VGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 87
Query: 488 GFCSHARHSILIYE--YLKRGSLATNLSNDAAAEEL------------------------ 521
+ AR S+ + YL + +L+N ++L
Sbjct: 88 DVFTPAR-SLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADI 146
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKK 571
D+ N+ ++ + + + DFG+A+ + V T Y AP+ Y +
Sbjct: 147 IHRDLKPSNLAVNEDCELKILDFGLARHT---DDEMAGFVATRWYRAPEIMLNWMHYNQT 203
Query: 572 CDVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 204 VDIWSVGCIMAELLTGR 220
>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine
pdb|4AA5|A Chain A, P38alpha Map Kinase Bound To Cmpd 33
Length = 365
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 35 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 92
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 93 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 152
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 153 HRDLKPSNLAVNEDXELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 209
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 210 DIWSVGCIMAELLTGR 225
>pdb|2OZA|B Chain B, Structure Of P38alpha Complex
pdb|3P78|A Chain A, P38 Inhibitor-Bound
pdb|3P79|A Chain A, P38 Inhibitor-Bound
pdb|3P7A|A Chain A, P38 Inhibitor-Bound
pdb|3P7B|A Chain A, P38 Inhibitor-Bound
pdb|3P7C|A Chain A, P38 Inhibitor-Bound
pdb|3P5K|A Chain A, P38 Inhibitor-Bound
Length = 366
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 43/197 (21%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 36 VGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 93
Query: 488 GFCSHARHSILIYE--YLKRGSLATNLSNDAAAEEL------------------------ 521
+ AR S+ + YL + +L+N ++L
Sbjct: 94 DVFTPAR-SLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADI 152
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKK 571
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 153 IHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQT 209
Query: 572 CDVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 210 VDIWSVGCIMAELLTGR 226
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 54/272 (19%), Positives = 109/272 (40%), Gaps = 58/272 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 40 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 99
Query: 473 EALTKIRHRNIVKFYGFCSHARHSIL--------IYEYLKR-----GSL----------- 508
+ + ++ + G C + ++ + +Y++ GS
Sbjct: 100 D------NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 153
Query: 509 ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAP 566
N D D++++NVL+ ++DFG+AK L + + A G +++A
Sbjct: 154 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 213
Query: 567 D------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP P
Sbjct: 214 ESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQP 266
Query: 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
I + + C + +SRP + +
Sbjct: 267 PICT----IDVYMIMVKCWMIDADSRPKFREL 294
>pdb|4DN5|A Chain A, Crystal Structure Of Nf-kb-inducing Kinase (nik)
pdb|4DN5|B Chain B, Crystal Structure Of Nf-kb-inducing Kinase (nik)
Length = 356
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 92/241 (38%), Gaps = 50/241 (20%)
Query: 388 NREGQRSPQNSQGLLSILSFKGKFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF 447
+RE ++++G+L K DY E ++ + +G G G V+R E F
Sbjct: 43 SREPSPKTEDNEGVLLTEKLK-PVDY-EYREEVHWATHQLRLGRGSFGEVHRMEDKQTGF 100
Query: 448 -LAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRG 506
AVKK ++ +E A LT R IV YG + E L+ G
Sbjct: 101 QCAVKKVRL-----EVFRAEELMA-CAGLTSPR---IVPLYGAVREGPWVNIFMELLEGG 151
Query: 507 SLATNLSNDA-------------AAEEL-----------DISSKNVLL--DLEHKAHVSD 540
SL + A E L D+ + NVLL D H A + D
Sbjct: 152 SLGQLVKEQGCLPEDRALYYLGQALEGLEYLHSRRILHGDVKADNVLLSSDGSHAA-LCD 210
Query: 541 FGIAKFLKPDSSNWSALVGTY-----RYVAPDY------RKKCDVYSFRVLALEVIKGKH 589
FG A L+PD L G Y ++AP+ K DV+S + L ++ G H
Sbjct: 211 FGHAVCLQPDGLGKDLLTGDYIPGTETHMAPEVVLGRSCDAKVDVWSSCCMMLHMLNGCH 270
Query: 590 P 590
P
Sbjct: 271 P 271
>pdb|4G3G|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase
(nik) V408l Bound To A 2-(aminothiazolyl)phenol (cmp3)
Length = 350
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 99/262 (37%), Gaps = 55/262 (20%)
Query: 371 SGCISVIAYVPIIWDQANREGQR---SPQNSQGLLSILSFKGKFDYVEIIRAINDFDAKY 427
SG +A + W + + QR ++++G+L K DY E ++ +
Sbjct: 21 SGQAHSLASLAKTWSSGSAKLQRLGPETEDNEGVLLTEKLK-PVDY-EYREEVHWMTHQP 78
Query: 428 CIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFF--AEIEALTKIRHRNIV 484
+G G G V+R + F AVKK + E F E+ A + IV
Sbjct: 79 RLGRGSFGEVHRMKDKQTGFQCAVKKV-----------RLEVFRVEELVACAGLSSPRIV 127
Query: 485 KFYGFCSHARHSILIYEYLKRGSLAT------NLSNDAAAEEL----------------- 521
YG + E L+ GSL L D A L
Sbjct: 128 PLYGAVREGPWVNIFMELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRRILH 187
Query: 522 -DISSKNVLLDLE-HKAHVSDFGIAKFLKPDSSNWSALVGTY-----RYVAPDY------ 568
D+ + NVLL + +A + DFG A L+PD S L G Y ++AP+
Sbjct: 188 GDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPC 247
Query: 569 RKKCDVYSFRVLALEVIKGKHP 590
K D++S + L ++ G HP
Sbjct: 248 DAKVDIWSSCCMMLHMLNGCHP 269
>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With
Inhibitor Pg-874743
pdb|2GHM|A Chain A, Mutated Map Kinase P38 (Mus Musculus) In Complex With
Inhbitor Pg-895449
Length = 348
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 81/197 (41%), Gaps = 43/197 (21%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 26 VGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 83
Query: 488 GFCSHARHSILIYE--YLKRGSLATNLSNDAAAEEL------------------------ 521
+ AR S+ + YL + +L+N ++L
Sbjct: 84 DVFTPAR-SLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADI 142
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKK 571
D+ N+ ++ + + + DFG+A+ + V T Y AP+ Y +
Sbjct: 143 IHRDLKPSNLAVNEDCELKILDFGLARHT---DDEMAGFVATRWYRAPEIMLNWMHYNQT 199
Query: 572 CDVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 200 VDIWSVGCIMAELLTGR 216
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 106/273 (38%), Gaps = 60/273 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 74
Query: 473 EALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------------------------ 508
+ + ++ + G C + LI + + G L
Sbjct: 75 D------NPHVCRLLGICLTSTVQ-LITQLMPFGXLLDYVREHKDNIGSQYLLNWCVQIA 127
Query: 509 -ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVA 565
N D D++++NVL+ ++DFG+AK L + + A G +++A
Sbjct: 128 KGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMA 187
Query: 566 PD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP
Sbjct: 188 LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQ 240
Query: 619 PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
P I + + C + +SRP + +
Sbjct: 241 PPICT----IDVYMIMVKCWMIDADSRPKFREL 269
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent Dual
Inhibitor
Length = 315
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 52/272 (19%), Positives = 108/272 (39%), Gaps = 58/272 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 68
Query: 473 EALTKIRHRNIVKFYGFCSHARHSIL--------IYEYLKRG----------------SL 508
+ + ++ + G C + ++ + +Y++ +
Sbjct: 69 D------NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 122
Query: 509 ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAP 566
N D D++++NVL+ ++DFG+AK L + + A G +++A
Sbjct: 123 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 182
Query: 567 D------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP P
Sbjct: 183 ESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQP 235
Query: 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
I + + C + +SRP + +
Sbjct: 236 PICT----IDVYMIMVKCWMIDADSRPKFREL 263
>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk
Length = 476
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 25/121 (20%)
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------- 520
EI+ L RH +I+K Y S ++ EY+ G L + + +E
Sbjct: 66 EIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQI 125
Query: 521 --------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP 566
D+ +NVLLD A ++DFG++ + D G+ Y AP
Sbjct: 126 LSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMS-DGEFLRXSCGSPNYAAP 184
Query: 567 D 567
+
Sbjct: 185 E 185
>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499
pdb|3FKO|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3668
pdb|3FLN|C Chain C, P38 Kinase Crystal Structure In Complex With R1487
Length = 372
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 42 VGSGAYGSVCAAFDTKTGLRVAVKKLSKPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 99
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 100 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 159
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 160 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 216
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 217 DIWSVGCIMAELLTGR 232
>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1-
Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3-
Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide
Length = 380
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 50 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 107
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 108 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 167
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 168 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 224
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 225 DIWSVGCIMAELLTGR 240
>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P-
Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl-
Pyridin-3-Yl)naphthalen-1-Yl]urea
pdb|3CTQ|A Chain A, Structure Of Map Kinase P38 In Complex With A
1-O-Tolyl-1,2, 3-Triazole-4-Carboxamide
Length = 348
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 26 VGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 83
Query: 488 GFCSHAR-----HSILIYEYLKRGSL-----ATNLSND------------------AAAE 519
+ AR + + + +L L L++D A
Sbjct: 84 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCAKLTDDHVQFLIYQILRGLKYIHSADII 143
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 144 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 200
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 201 DIWSVGCIMAELLTGR 216
>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor
Length = 383
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 53 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 110
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 111 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 170
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 171 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 227
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 228 DIWSVGCIMAELLTGR 243
>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In
A Putative Auto-Inhibition State
Length = 340
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 106/281 (37%), Gaps = 57/281 (20%)
Query: 421 NDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIE-ALTKI 478
+D + +G G +G V + +PS + +AVK+ + + S + QK +++ ++ +
Sbjct: 51 DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQE---QKRLLMDLDISMRTV 107
Query: 479 RHRNIVKFYG---------FCSHARHSILIYEYLKRGSLATNLSND----------AAAE 519
V FYG C + L Y + + D A E
Sbjct: 108 DCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALE 167
Query: 520 EL---------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD--- 567
L D+ NVL++ + + DFGI+ +L DS + G Y+AP+
Sbjct: 168 HLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLV-DSVAKTIDAGCKPYMAPERIN 226
Query: 568 -------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620
Y K D++S + +E+ + P + + L + PS
Sbjct: 227 PELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPF-----------QQLKQVVEEPS 275
Query: 621 PDVQGKLISIMEVAFS--CLDVSPESRPTMQTITQQLLFSL 659
P + S V F+ CL + + RPT + Q F+L
Sbjct: 276 PQLPADKFSAEFVDFTSQCLKKNSKERPTYPELMQHPFFTL 316
>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain
Length = 332
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 418 RAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFFAEIEALT 476
R + DF+ C+G G G V+ A+ + A+K+ LP+ ++A +K E++AL
Sbjct: 3 RYLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIR--LPNRELAREK-VMREVKALA 59
Query: 477 KIRHRNIVKFY 487
K+ H IV+++
Sbjct: 60 KLEHPGIVRYF 70
>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955
Length = 350
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 28 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 85
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 86 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 145
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 146 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 202
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 203 DIWSVGCIMAELLTGR 218
>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995
pdb|1BL7|A Chain A, The Complex Structure Of The Map Kinase P38SB220025
pdb|2EWA|A Chain A, Dual Binding Mode Of Pyridinylimidazole To Map Kinase P38
pdb|1A9U|A Chain A, The Complex Structure Of The Map Kinase P38SB203580
pdb|3HA8|A Chain A, The Complex Structure Of The Map Kinase P38COMPOUND 14B
Length = 379
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 49 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 106
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 107 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 166
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 167 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 223
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 224 DIWSVGCIMAELLTGR 239
>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole
Inhibitor
Length = 372
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 42 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 99
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 100 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 159
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 160 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 216
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 217 DIWSVGCIMAELLTGR 232
>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195
pdb|3FKL|A Chain A, P38 Kinase Crystal Structure In Complex With Ro9552
pdb|3FKN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro7125
pdb|3FL4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro5634
pdb|3FLQ|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((S)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin
pdb|3FLS|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((R)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin-7-One
pdb|3FLW|A Chain A, P38 Kinase Crystal Structure In Complex With Pamapimod
pdb|3FLY|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-Isopropylamino-8-Methyl-8h-Pyrido[2,
3- D]pyrimidin-7-One
pdb|3FLZ|A Chain A, P38 Kinase Crystal Structure In Complex With
8-Methyl-6-Phenoxy-2-
(Tetrahydro-Pyran-4-Ylamino)-8h-Pyrido[2,
3-D]pyrimidin-7-One
pdb|3FMH|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((R)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FMJ|A Chain A, P38 Kinase Crystal Structure In Complex With
4-(5-Methyl-3-Phenyl- Isoxazol-4-Yl)-Pyrimidin-2-Ylamine
pdb|3FMK|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((S)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FML|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6224
pdb|3FMM|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6226
pdb|3FMN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro2530
pdb|3FSF|A Chain A, P38 Kinase Crystal Structure In Complex With 3-(2,6-
Dichloro-Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-
Phenylamino]-
1-Methyl-3,4-Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3FSK|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6257
Length = 372
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 42 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 99
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 100 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 159
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 160 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 216
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 217 DIWSVGCIMAELLTGR 232
>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a
pdb|4H1M|A Chain A, Crystal Structure Of Pyk2 With The Indole 10c
Length = 293
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 99/264 (37%), Gaps = 52/264 (19%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKE-FFAEIEALTKIRHRNIVKFY 487
+G G G VY + + + D D KE F +E + + H +IVK
Sbjct: 32 LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI 91
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-------------------------D 522
G + +I E G L L + + ++ D
Sbjct: 92 GIIEE-EPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRD 150
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT--YRYVAPD------YRKKCDV 574
I+ +N+L+ + DFG++++++ D + A V ++++P+ + DV
Sbjct: 151 IAVRNILVASPECVKLGDFGLSRYIE-DEDYYKASVTRLPIKWMSPESINFRRFTTASDV 209
Query: 575 YSFRVLALEVIK-GKHPRGFVSSILPSPSVINM--RLDEMLDPRLPPPSPDVQGKLISIM 631
+ F V E++ GK P + L + VI + + D + P L PP L ++M
Sbjct: 210 WMFAVCMWEILSFGKQPFFW----LENKDVIGVLEKGDRLPKPDLCPPV------LYTLM 259
Query: 632 EVAFSCLDVSPESRPTMQTITQQL 655
C D P RP + L
Sbjct: 260 T---RCWDYDPSDRPRFTELVCSL 280
>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376
pdb|3NNV|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp437
pdb|3NNW|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp802
Length = 354
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 30 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 87
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 88 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 147
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 148 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 204
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 205 DIWSVGCIMAELLTGR 220
>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine
Kinase 2 Beta (ptk2b)
Length = 281
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 99/264 (37%), Gaps = 52/264 (19%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKE-FFAEIEALTKIRHRNIVKFY 487
+G G G VY + + + D D KE F +E + + H +IVK
Sbjct: 20 LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI 79
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-------------------------D 522
G + +I E G L L + + ++ D
Sbjct: 80 GIIEE-EPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRD 138
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT--YRYVAPD------YRKKCDV 574
I+ +N+L+ + DFG++++++ D + A V ++++P+ + DV
Sbjct: 139 IAVRNILVASPECVKLGDFGLSRYIE-DEDYYKASVTRLPIKWMSPESINFRRFTTASDV 197
Query: 575 YSFRVLALEVIK-GKHPRGFVSSILPSPSVINM--RLDEMLDPRLPPPSPDVQGKLISIM 631
+ F V E++ GK P + L + VI + + D + P L PP L ++M
Sbjct: 198 WMFAVCMWEILSFGKQPFFW----LENKDVIGVLEKGDRLPKPDLCPPV------LYTLM 247
Query: 632 EVAFSCLDVSPESRPTMQTITQQL 655
C D P RP + L
Sbjct: 248 T---RCWDYDPSDRPRFTELVCSL 268
>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of
Camp-Dependent Protein Kinase
Length = 350
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 19/105 (18%)
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+A +L +EYL L D+ +N+L+D + V+DFG AK +K
Sbjct: 146 YAAQIVLTFEYLHSLDLIYR----------DLKPENLLIDQQGYIQVTDFGFAKRVK--G 193
Query: 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
W L GT +AP+ Y K D ++ VL E+ G P
Sbjct: 194 RTWX-LCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase
Erk1
pdb|2ZOQ|B Chain B, Structural Dissection Of Human Mitogen-Activated Kinase
Erk1
Length = 382
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 88/232 (37%), Gaps = 56/232 (24%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + K +A+KK + P + + EI+ L + RH N++
Sbjct: 51 IGEGAYGMVSSAYDHVRKTRVAIKKIS---PFEHQTYCQRTLREIQILLRFRHENVIGIR 107
Query: 488 GFCS----HARHSILIYEYLKRGSL-----ATNLSND------------------AAAEE 520
A + I + L L + LSND A
Sbjct: 108 DILRASTLEAMRDVYIVQDLMETDLYKLLKSQQLSNDHICYFLYQILRGLKYIHSANVLH 167
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+L++ + DFG+A+ P+ + L V T Y AP+ Y K
Sbjct: 168 RDLKPSNLLINTTCDLKICDFGLARIADPEHDHTGFLTEXVATRWYRAPEIMLNSKGYTK 227
Query: 571 KCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS------VINMR 607
D++S + E++ GKH + IL SPS +INM+
Sbjct: 228 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINMK 279
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 67/162 (41%), Gaps = 15/162 (9%)
Query: 148 LTFLDISDN--NFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNH 205
L FLD+S N +F G + + L L++S N + +G L L D H
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQ--H 405
Query: 206 IVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG------SLTKLEFLNLSTNRFS-SLI 258
K EF SL LI I H + + L+ LE L ++ N F + +
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLD---ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 259 PESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHN 300
P+ L L +LDLS+ Q Q P L L L +SHN
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 113/277 (40%), Gaps = 59/277 (21%)
Query: 23 TWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALE 82
T LKSL +L N +G S +L SL +L L N LS S + T L
Sbjct: 321 TLKLKSLKRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 83 NNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAF 142
+ F G VI ++F G L + + +N++ +SE F
Sbjct: 379 DLSFNG--------------VITMSSNFLG--------LEQLEHLDFQHSNLK-QMSE-F 414
Query: 143 GIYL---NLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEF 199
++L NL +LDIS + +A N G LS+L V L++ S F
Sbjct: 415 SVFLSLRNLIYLDISHTH--TRVAFN-GIFNGLSSLEV----------LKMAGNSFQENF 461
Query: 200 DLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL-- 257
+P F +L +LT L L QL P+ SL+ L+ LN+S N F SL
Sbjct: 462 ----------LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511
Query: 258 IPESLGNLLK-----LHYLDLSKYQFIQELPKELGKL 289
P N L+ L+++ SK Q +Q P L L
Sbjct: 512 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548
>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4X|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4Y|A Chain A, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Y|B Chain B, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Z|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 1.84a
pdb|3C50|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C50|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C51|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
pdb|3C51|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
Length = 543
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------DYRKKCDVY 575
D+ +NVLLD + +SD G+A LK + GT ++AP +Y D +
Sbjct: 314 DLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYF 373
Query: 576 SFRVLALEVIKGKHP 590
+ V E+I + P
Sbjct: 374 ALGVTLYEMIAARGP 388
>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
pdb|1KOB|B Chain B, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
Length = 387
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 82/214 (38%), Gaps = 48/214 (22%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYR-AELPSKEFLAVKKFNSPLPSDQIADQKEFF 469
+DY +I+ + GSG G V+R E + K N+P P D+ + E
Sbjct: 50 YDYYDILEEL---------GSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNE-- 98
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSND----AAAE------ 519
I + ++ H ++ + +LI E+L G L ++ + + AE
Sbjct: 99 --ISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMR 156
Query: 520 ---------------ELDISSKNVLLDLEHKAHVS--DFGIAKFLKPDSSNWSALVGTYR 562
LDI +N++ + + + V DFG+A L PD T
Sbjct: 157 QACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIV-KVTTATAE 215
Query: 563 YVAPDYRKK------CDVYSFRVLALEVIKGKHP 590
+ AP+ + D+++ VL ++ G P
Sbjct: 216 FAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSP 249
>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A
Pyrrole-2- Carboxamide Inhibitor
Length = 371
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 41 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 98
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 99 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 158
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 159 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 215
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 216 DIWSVGCIMAELLTGR 231
>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A
Dihydroquinazolinone Inhibitor
pdb|1OUK|A Chain A, The Structure Of P38 Alpha In Complex With A
Pyridinylimidazole Inhibitor
pdb|1OUY|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydropyrido- Pyrimidine Inhibitor
pdb|1R39|A Chain A, The Structure Of P38alpha
pdb|1YQJ|A Chain A, Crystal Structure Of P38 Alpha In Complex With A Selective
Pyridazine Inhibitor
pdb|2OKR|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2OKR|D Chain D, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|B Chain B, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|1WFC|A Chain A, Structure Of Apo, Unphosphorylated, P38 Mitogen Activated
Protein Kinase P38 (P38 Map Kinase) The Mammalian
Homologue Of The Yeast Hog1 Protein
pdb|3DS6|A Chain A, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|B Chain B, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|C Chain C, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|D Chain D, P38 Complex With A Phthalazine Inhibitor
pdb|3FC1|X Chain X, Crystal Structure Of P38 Kinase Bound To
Pyrimido-Pyridazinone Inhibitor
pdb|3GFE|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor
pdb|3ITZ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridazine Inhibitor
pdb|3LHJ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor.
pdb|3ZYA|A Chain A, Human P38 Map Kinase In Complex With 2-Amino-Phenylamino-
Dibenzosuberone
pdb|3U8W|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Triazolopyridazinone Inhibitor
Length = 366
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 36 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 93
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 94 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 153
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 154 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 210
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 211 DIWSVGCIMAELLTGR 226
>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYN|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYO|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
pdb|3NYO|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
Length = 576
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVY 575
D+ +N+LLD +SD G+A + P+ VGT Y+AP+ Y D +
Sbjct: 311 DLKPENILLDDHGHIRISDLGLAVHV-PEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWW 369
Query: 576 SFRVLALEVIKGKHP 590
+ L E+I G+ P
Sbjct: 370 ALGCLLYEMIAGQSP 384
>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 337
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 110/291 (37%), Gaps = 73/291 (25%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI--RHRNIVKF 486
IG GR+G V+ + E +AVK F + ++ +F E E + RH NI+ F
Sbjct: 45 IGKGRYGEVWMGKWRG-EKVAVKVFFT-------TEEASWFRETEIYQTVLMRHENILGF 96
Query: 487 YGFCSHARHS----ILIYEYLKRGSLATNLSN---DA----------------------- 516
S LI +Y + GSL L + DA
Sbjct: 97 IAADIKGTGSWTQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFS 156
Query: 517 -----AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS----ALVGTYRYVAPD 567
A D+ SKN+L+ ++D G+A D++ VGT RY+ P+
Sbjct: 157 TQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPE 216
Query: 568 YRKK------------CDVYSFRVLALEVIKGKHPRGFVS-------SILPS-PSVINMR 607
+ D+YSF ++ EV + G V ++PS PS +MR
Sbjct: 217 VLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMR 276
Query: 608 LDEMLDPRLPPPSPDVQGK---LISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ + +L P P+ L + ++ C +P SR T + + L
Sbjct: 277 -EIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTL 326
>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121
Length = 362
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 32 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 89
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 90 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 149
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 150 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 206
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 207 DIWSVGCIMAELLTGR 222
>pdb|3HEC|A Chain A, P38 In Complex With Imatinib
pdb|3HEG|A Chain A, P38 In Complex With Sorafenib
Length = 348
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 26 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 83
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 84 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 143
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 144 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 200
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 201 DIWSVGCIMAELLTGR 216
>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant
Length = 360
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 30 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 87
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 88 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 147
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 148 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 204
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 205 DIWSVGCIMAELLTGR 220
>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase
Length = 362
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 32 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 89
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 90 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 149
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 150 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 206
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 207 DIWSVGCIMAELLTGR 222
>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A
Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE
COMPLEX IN Solution
Length = 359
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 43/197 (21%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 35 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 92
Query: 488 GFCSHARHSILIYE--YLKRGSLATNLSNDAAAEEL------------------------ 521
+ AR S+ + YL + +L+N ++L
Sbjct: 93 DVFTPAR-SLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADI 151
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKK 571
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 152 IHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQT 208
Query: 572 CDVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 209 VDIWSVGCIMAELLTGR 225
>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution
Length = 543
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------DYRKKCDVY 575
D+ +NVLLD + +SD G+A LK + GT ++AP +Y D +
Sbjct: 314 DLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYF 373
Query: 576 SFRVLALEVIKGKHP 590
+ V E+I + P
Sbjct: 374 ALGVTLYEMIAARGP 388
>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map
Kinase
Length = 360
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 30 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 87
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 88 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 147
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 148 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 204
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 205 DIWSVGCIMAELLTGR 220
>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
pdb|3C4W|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
Length = 543
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------DYRKKCDVY 575
D+ +NVLLD + +SD G+A LK + GT ++AP +Y D +
Sbjct: 314 DLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYF 373
Query: 576 SFRVLALEVIKGKHP 590
+ V E+I + P
Sbjct: 374 ALGVTLYEMIAARGP 388
>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
pdb|2ACX|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
Length = 576
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVY 575
D+ +N+LLD +SD G+A + P+ VGT Y+AP+ Y D +
Sbjct: 311 DLKPENILLDDHGHIRISDLGLAVHV-PEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWW 369
Query: 576 SFRVLALEVIKGKHP 590
+ L E+I G+ P
Sbjct: 370 ALGCLLYEMIAGQSP 384
>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|B Chain B, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|C Chain C, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|D Chain D, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
Length = 543
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------DYRKKCDVY 575
D+ +NVLLD + +SD G+A LK + GT ++AP +Y D +
Sbjct: 314 DLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYF 373
Query: 576 SFRVLALEVIKGKHP 590
+ V E+I + P
Sbjct: 374 ALGVTLYEMIAARGP 388
>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48
pdb|3GCU|B Chain B, Human P38 Map Kinase In Complex With Rl48
pdb|3HV4|A Chain A, Human P38 Map Kinase In Complex With Rl51
pdb|3HV4|B Chain B, Human P38 Map Kinase In Complex With Rl51
pdb|3HV5|A Chain A, Human P38 Map Kinase In Complex With Rl24
pdb|3HV5|B Chain B, Human P38 Map Kinase In Complex With Rl24
pdb|3HV6|A Chain A, Human P38 Map Kinase In Complex With Rl39
pdb|3HV7|A Chain A, Human P38 Map Kinase In Complex With Rl38
pdb|3HUC|A Chain A, Human P38 Map Kinase In Complex With Rl40
pdb|3LFA|A Chain A, Human P38 Map Kinase In Complex With Dasatinib
pdb|3QUE|A Chain A, Human P38 Map Kinase In Complex With Skepinone-L
pdb|3QUD|A Chain A, Human P38 Map Kinase In Complex With
2-Amino-Phenylamino-Benzophenone
pdb|3UVP|A Chain A, Human P38 Map Kinase In Complex With A Benzamide
Substituted Benzosuberone
pdb|3UVQ|A Chain A, Human P38 Map Kinase In Complex With A Dibenzosuberone
Derivative
pdb|4EH2|A Chain A, Human P38 Map Kinase In Complex With Np-F1 And Rl87
pdb|4EH3|A Chain A, Human P38 Map Kinase In Complex With Np-F2 And Rl87
pdb|4EH4|A Chain A, Human P38 Map Kinase In Complex With Np-F3 And Rl87
pdb|4EH5|A Chain A, Human P38 Map Kinase In Complex With Np-F4 And Rl87
pdb|4EH6|A Chain A, Human P38 Map Kinase In Complex With Np-F5 And Rl87
pdb|4EH7|A Chain A, Human P38 Map Kinase In Complex With Np-F6 And Rl87
pdb|4EH8|A Chain A, Human P38 Map Kinase In Complex With Np-F7 And Rl87
pdb|4EH9|A Chain A, Human P38 Map Kinase In Complex With Np-F11 And Rl87
pdb|4EHV|A Chain A, Human P38 Map Kinase In Complex With Np-F10 And Rl87
pdb|3UVR|A Chain A, Human P38 Map Kinase In Complex With Km064
pdb|4DLI|A Chain A, Human P38 Map Kinase In Complex With Rl87
pdb|4DLJ|A Chain A, Human P38 Map Kinase In Complex With Rl163
Length = 360
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 30 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 87
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 88 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 147
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 148 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 204
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 205 DIWSVGCIMAELLTGR 220
>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine
pdb|2YIX|A Chain A, Triazolopyridine Inhibitors Of P38
Length = 351
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 27 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 84
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 85 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 144
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 145 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 201
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 202 DIWSVGCIMAELLTGR 217
>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant
Length = 360
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 30 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 87
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 88 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 147
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 148 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 204
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 205 DIWSVGCIMAELLTGR 220
>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant
Length = 360
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 30 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 87
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 88 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 147
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 148 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 204
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 205 DIWSVGCIMAELLTGR 220
>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
Length = 349
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 27 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 84
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 85 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 144
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 145 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 201
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 202 DIWSVGCIMAELLTGR 217
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 54/272 (19%), Positives = 109/272 (40%), Gaps = 58/272 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 18 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 77
Query: 473 EALTKIRHRNIVKFYGFCSHARHSIL--------IYEYLKR-----GSL----------- 508
+ + ++ + G C + ++ + +Y++ GS
Sbjct: 78 D------NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 131
Query: 509 ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAP 566
N D D++++NVL+ ++DFG+AK L + + A G +++A
Sbjct: 132 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 191
Query: 567 D------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP P
Sbjct: 192 ESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQP 244
Query: 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
I + + C + +SRP + +
Sbjct: 245 PICT----IDVYMIMRKCWMIDADSRPKFREL 272
>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l)
Activating Mutant
Length = 367
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 37 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 94
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 95 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 154
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 155 HRDLKPSNLAVNEDCELKILDFGLARHTADEMTGY---VATRWYRAPEIMLNWMHYNQTV 211
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 212 DIWSVGCIMAELLTGR 227
>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea
pdb|2BAK|A Chain A, P38alpha Map Kinase Bound To Mpaq
pdb|4A9Y|A Chain A, P38alpha Map Kinase Bound To Cmpd 8
pdb|4AA0|A Chain A, P38alpha Map Kinase Bound To Cmpd 2
pdb|4AA4|A Chain A, P38alpha Map Kinase Bound To Cmpd 22
pdb|4AAC|A Chain A, P38alpha Map Kinase Bound To Cmpd 29
Length = 365
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 35 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 92
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 93 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 152
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 153 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 209
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 210 DIWSVGCIMAELLTGR 225
>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|3MW1|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|2YIS|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase.
pdb|2YIW|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase
Length = 359
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 29 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 86
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 87 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 146
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 147 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 203
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 204 DIWSVGCIMAELLTGR 219
>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase
Length = 360
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 30 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 87
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 88 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 147
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 148 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNAMHYNQTV 204
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 205 DIWSVGCIMAELLTGR 220
>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase
Length = 367
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 37 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 94
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 95 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 154
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 155 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 211
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 212 DIWSVGCIMAELLTGR 227
>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In
Complex With 4-[3-Methylsulfanylanilino]-6,7-
Dimethoxyquinazoline
pdb|1KV1|A Chain A, P38 Map Kinase In Complex With Inhibitor 1
pdb|1KV2|A Chain A, Human P38 Map Kinase In Complex With Birb 796
pdb|1WBO|A Chain A, Fragment Based P38 Inhibitors
pdb|1W7H|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W82|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W83|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W84|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1ZZ2|A Chain A, Two Classes Of P38alpha Map Kinase Inhibitors Having A
Common Diphenylether Core But Exhibiting Divergent
Binding Modes
pdb|1WBN|A Chain A, Fragment Based P38 Inhibitors
pdb|1WBS|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBT|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-based Lead Generation.
pdb|1WBV|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBW|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1ZYJ|A Chain A, Human P38 Map Kinase In Complex With Inhibitor 1a
pdb|2ZAZ|A Chain A, Crystal Structure Of P38 In Complex With 4-Anilino
Quinoline Inhibitor
pdb|2ZB0|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|2ZB1|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|3HL7|A Chain A, Crystal Structure Of Human P38alpha Complexed With Sd-0006
pdb|3HLL|A Chain A, Crystal Structure Of Human P38alpha Complexed With
Ph-797804
pdb|3HP2|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyridinone Compound
pdb|3HP5|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyrimidopyridazinone Compound
pdb|3KF7|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Triazolopyrimidine Compound
pdb|3MGY|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3ROC|A Chain A, Crystal Structure Of Human P38 Alpha Complexed With A
Pyrimidinone Compound
pdb|3RIN|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|4E5B|A Chain A, Structure Of P38a Map Kinase Without Bog
pdb|4E6A|A Chain A, P38a-Pia23 Complex
pdb|4E6C|A Chain A, P38a-perifosine Complex
pdb|4E8A|A Chain A, The Crystal Structure Of P38a Map Kinase In Complex With
Pia24
Length = 360
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 30 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 87
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 88 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 147
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 148 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 204
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 205 DIWSVGCIMAELLTGR 220
>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715
pdb|3ZSH|A Chain A, X-Ray Structure Of P38alpha Bound To Scio-469
pdb|3ZSI|A Chain A, X-Ray Structure Of P38alpha Bound To Vx-745
pdb|3ZS5|A Chain A, Structural Basis For Kinase Selectivity Of Three Clinical
P38alpha Inhibitors
Length = 362
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 32 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 89
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 90 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 149
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 150 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 206
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 207 DIWSVGCIMAELLTGR 222
>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-A
pdb|2FSM|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-B
Length = 367
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 37 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 94
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 95 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 154
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 155 HRDLKPSNLAVNEDCELKILDFGLARHTADEMTGY---VATRWYRAPEIMLNWMHYNQTV 211
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 212 DIWSVGCIMAELLTGR 227
>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine
Kinase
pdb|3FZP|A Chain A, Crystal Structure Of Pyk2 Complexed With Atpgs
pdb|3FZR|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-431396
pdb|3FZS|A Chain A, Crystal Structure Of Pyk2 Complexed With Birb796
pdb|3FZT|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-4618433
pdb|3H3C|A Chain A, Crystal Structure Of Pyk2 In Complex With Sulfoximine-
Substituted Trifluoromethylpyrimidine Analog
pdb|3ET7|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-2318841
Length = 277
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 99/264 (37%), Gaps = 52/264 (19%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKE-FFAEIEALTKIRHRNIVKFY 487
+G G G VY + + + D D KE F +E + + H +IVK
Sbjct: 16 LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI 75
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-------------------------D 522
G + +I E G L L + + ++ D
Sbjct: 76 GIIEE-EPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRD 134
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT--YRYVAPD------YRKKCDV 574
I+ +N+L+ + DFG++++++ D + A V ++++P+ + DV
Sbjct: 135 IAVRNILVASPECVKLGDFGLSRYIE-DEDYYKASVTRLPIKWMSPESINFRRFTTASDV 193
Query: 575 YSFRVLALEVIK-GKHPRGFVSSILPSPSVINM--RLDEMLDPRLPPPSPDVQGKLISIM 631
+ F V E++ GK P + L + VI + + D + P L PP L ++M
Sbjct: 194 WMFAVCMWEILSFGKQPFFW----LENKDVIGVLEKGDRLPKPDLCPPV------LYTLM 243
Query: 632 EVAFSCLDVSPESRPTMQTITQQL 655
C D P RP + L
Sbjct: 244 T---RCWDYDPSDRPRFTELVCSL 264
>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a)
Activating Mutant
Length = 367
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 37 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 94
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 95 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 154
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 155 HRDLKPSNLAVNEDCELKILDFGLARHTADEMTGY---VATRWYRAPEIMLNWMHYNQTV 211
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 212 DIWSVGCIMAELLTGR 227
>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase
Length = 380
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 43/197 (21%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 50 VGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 107
Query: 488 GFCSHARHSILIYE--YLKRGSLATNLSNDAAAEEL------------------------ 521
+ AR S+ + YL + +L+N ++L
Sbjct: 108 DVFTPAR-SLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADI 166
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKK 571
D+ N+ ++ + + + DFG+A+ V T Y AP+ Y +
Sbjct: 167 IHRDLKPSNLAVNEDCELKILDFGLARHT---DDEMXGXVATRWYRAPEIMLNWMHYNQT 223
Query: 572 CDVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 224 VDIWSVGCIMAELLTGR 240
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 47/184 (25%)
Query: 145 YLN-----LTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEF 199
YLN LT LD+S N P L+ LN + N +T +++ + + L E
Sbjct: 110 YLNCDTNKLTKLDVSQN-------------PLLTYLNCARNTLTE---IDVSHNTQLTEL 153
Query: 200 DLSLNHIVGKIP----KEFGKL----NSLTKLILRGNQLIGHLPSEIGSLTKLE------ 245
D LN + K+ + L N +T+L + N+L+ L + ++TKL+
Sbjct: 154 DCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQ 213
Query: 246 --FLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLS-------ELE 296
FL+ S+N+ + + + L +L Y D S + L KL L E++
Sbjct: 214 LTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEID 270
Query: 297 LSHN 300
L+HN
Sbjct: 271 LTHN 274
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 52/272 (19%), Positives = 108/272 (39%), Gaps = 58/272 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 25 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 84
Query: 473 EALTKIRHRNIVKFYGFCSHARHSIL--------IYEYLKRG----------------SL 508
+ + ++ + G C + ++ + +Y++ +
Sbjct: 85 D------NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 138
Query: 509 ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAP 566
N D D++++NVL+ ++DFG+AK L + + A G +++A
Sbjct: 139 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 198
Query: 567 D------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP P
Sbjct: 199 ESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQP 251
Query: 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
I + + C + +SRP + +
Sbjct: 252 PICT----IDVYMIMRKCWMIDADSRPKFREL 279
>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
Length = 360
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 30 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 87
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 88 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKXQKLTDDHVQFLIYQILRGLKYIHSADII 147
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 148 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 204
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 205 DIWSVGCIMAELLTGR 220
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 68/163 (41%), Gaps = 15/163 (9%)
Query: 147 NLTFLDISDN--NFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLN 204
+L FLD+S N +F G + + L L++S N + +G L L D
Sbjct: 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQ-- 428
Query: 205 HIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG------SLTKLEFLNLSTNRFS-SL 257
H K EF SL LI I H + + L+ LE L ++ N F +
Sbjct: 429 HSNLKQMSEFSVFLSLRNLIYLD---ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 485
Query: 258 IPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHN 300
+P+ L L +LDLS+ Q Q P L L L +SHN
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 210 IPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL--IPESLGNLLK 267
+P F +L +LT L L QL P+ SL+ L+ LN+S N F SL P N L+
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545
Query: 268 -----LHYLDLSKYQFIQELPKELGKL 289
L+++ SK Q +Q P L L
Sbjct: 546 VLDYSLNHIMTSKKQELQHFPSSLAFL 572
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 3/152 (1%)
Query: 42 SLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNG--A 99
++ S+ L L +L +NL SV + ++ L+ +H + N NG +
Sbjct: 411 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 470
Query: 100 LERVIVGGNHFR-GPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNF 158
LE + + GN F+ +P NL + L + AF +L L++S NNF
Sbjct: 471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Query: 159 FGEIASNWGKCPKLSTLNVSMNNITRSIPLEI 190
F + L L+ S+N+I S E+
Sbjct: 531 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562
>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex
pdb|2QD9|A Chain A, P38 Alpha Map Kinase Inhibitor Based On Heterobicyclic
Scaffolds
pdb|2RG5|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11b
pdb|2RG6|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11j
pdb|3C5U|A Chain A, P38 Alpha Map Kinase Complexed With A Benzothiazole Based
Inhibitor
pdb|3BV2|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 30
pdb|3BV3|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 2
pdb|3BX5|A Chain A, P38 Alpha Map Kinase Complexed With Bms-640994
pdb|3L8X|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Pyrimidine
Based Inhibitor
pdb|3NWW|A Chain A, P38 Alpha Kinase Complexed With A
2-Aminothiazol-5-Yl-Pyrimidine Based Inhibitor
pdb|3MVL|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVL|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVM|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3MVM|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3OCG|A Chain A, P38 Alpha Kinase Complexed With A 5-Amino-Pyrazole Based
Inhibitor
pdb|3S4Q|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Triazine Based
Inhibitor
Length = 366
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 43/197 (21%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 36 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 93
Query: 488 GFCSHARHSILIYE--YLKRGSLATNLSNDAAAEEL------------------------ 521
+ AR S+ + YL + +L+N ++L
Sbjct: 94 DVFTPAR-SLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADI 152
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKK 571
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y +
Sbjct: 153 IHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQT 209
Query: 572 CDVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 210 VDIWSVGCIMAELLTGR 226
>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid-
Regulated Kinase 1 In Complex With Amp-Pnp
pdb|3HDM|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 1
pdb|3HDN|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 2
Length = 373
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 79/202 (39%), Gaps = 33/202 (16%)
Query: 421 NDFDAKYCIGSGRHGSVYRAELPSKE-FLAVKKFNSPLPSDQIADQKEFFAEIEALTK-I 478
+DF IG G G V A ++E F AVK + ++K +E L K +
Sbjct: 38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKK-KEEKHIMSERNVLLKNV 96
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDA----------AAE--------- 519
+H +V + A + +Y+ G L +L + AAE
Sbjct: 97 KHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLH 156
Query: 520 -----ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------Y 568
D+ +N+LLD + ++DFG+ K +S S GT Y+AP+ Y
Sbjct: 157 SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPY 216
Query: 569 RKKCDVYSFRVLALEVIKGKHP 590
+ D + + E++ G P
Sbjct: 217 DRTVDWWCLGAVLYEMLYGLPP 238
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 11/183 (6%)
Query: 124 LVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNIT 183
+ +S G + +G S++ +L +LD+S N ++SN+ +L L+ +N+
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 409
Query: 184 R----SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGH-LPSEI 238
+ S+ L + NL L D+S H F L+SL L + GN + LP
Sbjct: 410 QMSEFSVFLSLRNLIYL---DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 239 GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL-GKLVQLSELEL 297
L L FL+LS + L P + +L L L+++ Q ++ +P + +L L ++ L
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWL 525
Query: 298 SHN 300
N
Sbjct: 526 HTN 528
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 16/173 (9%)
Query: 147 NLTFLDISDN--NFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLN 204
+L FLD+S N +F G + + L L++S N + +G L L D
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQ-- 404
Query: 205 HIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG------SLTKLEFLNLSTNRFS-SL 257
H K EF SL LI I H + + L+ LE L ++ N F +
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLD---ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 258 IPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQI 310
+P+ L L +LDLS+ Q Q P L L L ++ N L + +P I
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL-KSVPDGI 513
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 93/241 (38%), Gaps = 30/241 (12%)
Query: 23 TWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALE 82
T LKSL +L N +G S +L SL +L L N LS S + T L
Sbjct: 321 TLKLKSLKRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 83 NNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAF 142
+ F G VI ++F G L + + +N++ +SE F
Sbjct: 379 DLSFNG--------------VITMSSNFLG--------LEQLEHLDFQHSNLK-QMSE-F 414
Query: 143 GIYL---NLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRS-IPLEIGNLSTLNE 198
++L NL +LDIS + + L L ++ N+ + +P L L
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 199 FDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLI 258
DLS + P F L+SL L + NQL LT L+ + L TN +
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534
Query: 259 P 259
P
Sbjct: 535 P 535
>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580
pdb|3GCQ|A Chain A, Human P38 Map Kinase In Complex With Rl45
pdb|3GCS|A Chain A, Human P38 Map Kinase In Complex With Sorafenib
pdb|3GCV|A Chain A, Human P38 Map Kinase In Complex With Rl62
pdb|3HV3|A Chain A, Human P38 Map Kinase In Complex With Rl49
pdb|3IW5|A Chain A, Human P38 Map Kinase In Complex With An Indole Derivative
pdb|3IW6|A Chain A, Human P38 Map Kinase In Complex With A Benzylpiperazin-
Pyrrol
pdb|3IW7|A Chain A, Human P38 Map Kinase In Complex With An Imidazo-Pyridine
pdb|3IW8|A Chain A, Structure Of Inactive Human P38 Map Kinase In Complex With
A Thiazole-Urea
pdb|3HUB|A Chain A, Human P38 Map Kinase In Complex With Scios-469
pdb|3L8S|A Chain A, Human P38 Map Kinase In Complex With Cp-547632
pdb|3LFB|A Chain A, Human P38 Map Kinase In Complex With Rl98
pdb|3LFC|A Chain A, Human P38 Map Kinase In Complex With Rl99
pdb|3LFD|A Chain A, Human P38 Map Kinase In Complex With Rl113
pdb|3LFE|A Chain A, Human P38 Map Kinase In Complex With Rl116
pdb|3LFF|A Chain A, Human P38 Map Kinase In Complex With Rl166
pdb|3PG3|A Chain A, Human P38 Map Kinase In Complex With Rl182
Length = 360
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 30 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 87
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N +++L
Sbjct: 88 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKSQKLTDDHVQFLIYQILRGLKYIHSADII 147
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+ + + + + V T Y AP+ Y +
Sbjct: 148 HRDLKPSNLAVNEDSELKILDFGLCRHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 204
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 205 DIWSVGCIMAELLTGR 220
>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based
Inhibitor
Length = 383
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 80/196 (40%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 53 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 110
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 111 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 170
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + + V T Y AP+ Y +
Sbjct: 171 HRDLKPSNLAVNEDCELKILDFGLARHTDDEMXGY---VATRWYRAPEIMLNWMHYNQTV 227
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 228 DIWSVGCIMAELLTGR 243
>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex
With Dp802
Length = 354
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 79/196 (40%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 30 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 87
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 88 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 147
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + DFG+A+ + V T Y AP+ Y +
Sbjct: 148 HRDLKPSNLAVNEDCELKILDFGLARHT---DDEMTGXVATRWYRAPEIMLNWMHYNQTV 204
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 205 DIWSVGCIMAELLTGR 220
>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d)
Length = 290
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 105/281 (37%), Gaps = 57/281 (20%)
Query: 421 NDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIE-ALTKI 478
+D + +G G +G V + +PS + +AVK+ + + S + QK +++ ++ +
Sbjct: 7 DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQE---QKRLLMDLDISMRTV 63
Query: 479 RHRNIVKFYG---------FCSHARHSILIYEYLKRGSLATNLSND----------AAAE 519
V FYG C + L Y + + D A E
Sbjct: 64 DCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALE 123
Query: 520 EL---------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD--- 567
L D+ NVL++ + + DFGI+ +L D + G Y+AP+
Sbjct: 124 HLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAK-DIDAGCKPYMAPERIN 182
Query: 568 -------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620
Y K D++S + +E+ + P + + L + PS
Sbjct: 183 PELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPF-----------QQLKQVVEEPS 231
Query: 621 PDVQGKLISIMEVAFS--CLDVSPESRPTMQTITQQLLFSL 659
P + S V F+ CL + + RPT + Q F+L
Sbjct: 232 PQLPADKFSAEFVDFTSQCLKKNSKERPTYPELMQHPFFTL 272
>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN The Apo Form
pdb|3UG2|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Gefitinib
pdb|3VJN|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Amppnp
Length = 334
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 20/139 (14%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAPD------YRKKCD 573
D++++NVL+ ++DFG+AK L + + A G +++A + Y + D
Sbjct: 149 DLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSD 208
Query: 574 VYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
V+S+ V E++ G P + + S I+ L++ RLP P I +
Sbjct: 209 VWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQPPICT----IDVYM 257
Query: 633 VAFSCLDVSPESRPTMQTI 651
+ C + +SRP + +
Sbjct: 258 IMVKCWMIDADSRPKFREL 276
>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156.
pdb|2X4F|B Chain B, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156
Length = 373
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 79/195 (40%), Gaps = 37/195 (18%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G GR G V++ E + K + + + D++E EI + ++ H N+++ Y
Sbjct: 97 LGGGRFGQVHKCEETATGLKLAAKI---IKTRGMKDKEEVKNEISVMNQLDHANLIQLYD 153
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDA-------------------------AAEELDI 523
+L+ EY+ G L + +++ LD+
Sbjct: 154 AFESKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQMYILHLDL 213
Query: 524 SSKNVL-LDLEHKA-HVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRK------KCDVY 575
+N+L ++ + K + DFG+A+ KP GT ++AP+ D++
Sbjct: 214 KPENILCVNRDAKQIKIIDFGLARRYKP-REKLKVNFGTPEFLAPEVVNYDFVSFPTDMW 272
Query: 576 SFRVLALEVIKGKHP 590
S V+A ++ G P
Sbjct: 273 SVGVIAYMLLSGLSP 287
>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s)
Length = 334
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 20/139 (14%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAPD------YRKKCD 573
D++++NVL+ ++DFG+AK L + + A G +++A + Y + D
Sbjct: 149 DLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSD 208
Query: 574 VYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
V+S+ V E++ G P + + S I+ L++ RLP P I +
Sbjct: 209 VWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQPPICT----IDVYM 257
Query: 633 VAFSCLDVSPESRPTMQTI 651
+ C + +SRP + +
Sbjct: 258 IMVKCWMIDADSRPKFREL 276
>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2
Length = 364
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 50/221 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A+KK + P + + EI+ L + RH NI+
Sbjct: 35 IGEGAYGMVCSAYDNLNKVRVAIKKIS---PFEHQTYXQRTLREIKILLRFRHENIIGIN 91
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------SND------------------AAAEE 520
+ Y+ + + T+L SND A
Sbjct: 92 DIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH 151
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + L V T Y AP+ Y K
Sbjct: 152 RDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTK 211
Query: 571 KCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS 602
D++S + E++ GKH + IL SPS
Sbjct: 212 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 252
>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine
Length = 353
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVY 575
D+ NVLLD E ++DFG+ K + + GT Y+AP+ Y D +
Sbjct: 149 DLKLDNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWW 208
Query: 576 SFRVLALEVIKGKHP 590
+ VL E++ G P
Sbjct: 209 AMGVLLYEMLCGHAP 223
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 105/273 (38%), Gaps = 60/273 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 17 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 76
Query: 473 EALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------------------------ 508
+ + ++ + G C + LI + + G L
Sbjct: 77 D------NPHVCRLLGICLTSTVQ-LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIA 129
Query: 509 -ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVA 565
N D D++++NVL+ ++DFG AK L + + A G +++A
Sbjct: 130 KGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMA 189
Query: 566 PD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP
Sbjct: 190 LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQ 242
Query: 619 PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
P I + + C + +SRP + +
Sbjct: 243 PPICT----IDVYMIMVKCWMIDADSRPKFREL 271
>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYD|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp.
pdb|1ZYD|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp
Length = 303
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 39/155 (25%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAK-------FLKPD-------SSNWSALVGTYRYVAPD 567
D+ N+ +D + DFG+AK LK D S N ++ +GT YVA +
Sbjct: 141 DLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATE 200
Query: 568 -------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620
Y +K D+YS ++ E+I +P F + + + +R + PP
Sbjct: 201 VLDGTGHYNEKIDMYSLGIIFFEMI---YP--FSTGMERVNILKKLR---SVSIEFPPDF 252
Query: 621 PD----VQGKLISIMEVAFSCLDVSPESRPTMQTI 651
D V+ K+I ++ +D P RP +T+
Sbjct: 253 DDNKMKVEKKIIRLL------IDHDPNKRPGARTL 281
>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Amp-Pnp
pdb|2ITO|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Iressa
pdb|2ITP|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Aee788
pdb|2ITQ|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Afn941
Length = 327
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 20/139 (14%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAPD------YRKKCD 573
D++++NVL+ ++DFG+AK L + + A G +++A + Y + D
Sbjct: 142 DLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSD 201
Query: 574 VYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
V+S+ V E++ G P + + S I+ L++ RLP P I +
Sbjct: 202 VWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQPPICT----IDVYM 250
Query: 633 VAFSCLDVSPESRPTMQTI 651
+ C + +SRP + +
Sbjct: 251 IMVKCWMIDADSRPKFREL 269
>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715
Length = 317
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 98/263 (37%), Gaps = 60/263 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN--IVKF 486
IGSG V++ K+ A+K N +Q D + EI L K++ + I++
Sbjct: 20 IGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLD--SYRNEIAYLNKLQQHSDKIIRL 77
Query: 487 YGFCSHARHSILIYE-----------------------YLKRGSLATNLSNDAAAEELDI 523
Y + ++ ++ E Y K A + + D+
Sbjct: 78 YDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDL 137
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW--SALVGTYRYVAPDYRKKC--------- 572
N L+ ++ + DFGIA ++PD+++ + VGT Y+ P+ K
Sbjct: 138 KPANFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKS 196
Query: 573 --------DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM--RLDEMLDPRLPPPSPD 622
DV+S + + GK P +IN +L ++DP PD
Sbjct: 197 KSKISPKSDVWSLGCILYYMTYGK---------TPFQQIINQISKLHAIIDPNHEIEFPD 247
Query: 623 VQGKLISIMEVAFSCLDVSPESR 645
+ K + +V CL P+ R
Sbjct: 248 IPEK--DLQDVLKCCLKRDPKQR 268
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 54/272 (19%), Positives = 108/272 (39%), Gaps = 58/272 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 22 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 81
Query: 473 EALTKIRHRNIVKFYGFCSHARHSIL--------IYEYLKR-----GSL----------- 508
+ + ++ + G C + ++ + +Y++ GS
Sbjct: 82 D------NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 135
Query: 509 ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAP 566
N D D++++NVL+ ++DFG AK L + + A G +++A
Sbjct: 136 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMAL 195
Query: 567 D------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP P
Sbjct: 196 ESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQP 248
Query: 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
I + + C + +SRP + +
Sbjct: 249 PICT----IDVYMIMVKCWMIDADSRPKFREL 276
>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By
Mutational Studies
Length = 298
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 85/213 (39%), Gaps = 44/213 (20%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFN----SPLPSDQIADQKEF-FAEIEA 474
+++ K +G G V R P+ + AVK + ++++ + +E E++
Sbjct: 17 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDI 76
Query: 475 LTKIR-HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------- 520
L K+ H NI++ L+++ +K+G L L+ E
Sbjct: 77 LRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEV 136
Query: 521 -----------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-- 567
D+ +N+LLD + ++DFG + L P ++ GT Y+AP+
Sbjct: 137 ICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDP-GEKLRSVCGTPSYLAPEII 195
Query: 568 ----------YRKKCDVYSFRVLALEVIKGKHP 590
Y K+ D++S V+ ++ G P
Sbjct: 196 ECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPP 228
>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide
Substrate Complex: Kinase Substrate Recognition
Length = 277
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 84/213 (39%), Gaps = 44/213 (20%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFN----SPLPSDQIADQKEF-FAEIEA 474
+++ K +G G V R P+ + AVK + ++++ + +E E++
Sbjct: 4 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDI 63
Query: 475 LTKIR-HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------- 520
L K+ H NI++ L+++ +K+G L L+ E
Sbjct: 64 LRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEV 123
Query: 521 -----------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-- 567
D+ +N+LLD + ++DFG + L P + GT Y+AP+
Sbjct: 124 ICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDP-GEKLREVCGTPSYLAPEII 182
Query: 568 ----------YRKKCDVYSFRVLALEVIKGKHP 590
Y K+ D++S V+ ++ G P
Sbjct: 183 ECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPP 215
>pdb|3VQU|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With 4- [(4-Amino-5-Cyano-6-Ethoxypyridin-2-
Yl)amino]benzamide
Length = 320
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 98/263 (37%), Gaps = 60/263 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN--IVKF 486
IGSG V++ K+ A+K N +Q D + EI L K++ + I++
Sbjct: 16 IGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLD--SYRNEIAYLNKLQQHSDKIIRL 73
Query: 487 YGFCSHARHSILIYE-----------------------YLKRGSLATNLSNDAAAEELDI 523
Y + ++ ++ E Y K A + + D+
Sbjct: 74 YDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDL 133
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW--SALVGTYRYVAPDYRKKC--------- 572
N L+ ++ + DFGIA ++PD+++ + VGT Y+ P+ K
Sbjct: 134 KPANFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKS 192
Query: 573 --------DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM--RLDEMLDPRLPPPSPD 622
DV+S + + GK P +IN +L ++DP PD
Sbjct: 193 KSKISPKSDVWSLGCILYYMTYGK---------TPFQQIINQISKLHAIIDPNHEIEFPD 243
Query: 623 VQGKLISIMEVAFSCLDVSPESR 645
+ K + +V CL P+ R
Sbjct: 244 IPEK--DLQDVLKCCLKRDPKQR 264
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 52/272 (19%), Positives = 107/272 (39%), Gaps = 58/272 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 74
Query: 473 EALTKIRHRNIVKFYGFCSHARHSIL--------IYEYLKRG----------------SL 508
+ + ++ + G C + ++ + +Y++ +
Sbjct: 75 D------NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 128
Query: 509 ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAP 566
N D D++++NVL+ ++DFG AK L + + A G +++A
Sbjct: 129 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMAL 188
Query: 567 D------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP P
Sbjct: 189 ESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQP 241
Query: 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
I + + C + +SRP + +
Sbjct: 242 PICT----IDVYMIMVKCWMIDADSRPKFREL 269
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 105/273 (38%), Gaps = 60/273 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 19 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 78
Query: 473 EALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------------------------ 508
+ + ++ + G C + LI + + G L
Sbjct: 79 D------NPHVCRLLGICLTSTVQ-LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIA 131
Query: 509 -ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVA 565
N D D++++NVL+ ++DFG AK L + + A G +++A
Sbjct: 132 KGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMA 191
Query: 566 PD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP
Sbjct: 192 LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQ 244
Query: 619 PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
P I + + C + +SRP + +
Sbjct: 245 PPICT----IDVYMIMVKCWMIDADSRPKFREL 273
>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1)
Catalytic Domain
Length = 317
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVY 575
D+ N+ L+ + + DFG+A ++ D L GT Y+AP+ + + D++
Sbjct: 167 DLKLGNLFLNDDMDVKIGDFGLATKIEFDGERKKTLCGTPNYIAPEVLCKKGHSFEVDIW 226
Query: 576 SFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAF 635
S + ++ GK P F +S L + I ++ +E PR P V LI M
Sbjct: 227 SLGCILYTLLVGKPP--FETSCLKE-TYIRIKKNEYSVPRHINP---VASALIRRM---- 276
Query: 636 SCLDVSPESRPTMQTITQQLLFSLVY 661
L P RP++ + F+ Y
Sbjct: 277 --LHADPTLRPSVAELLTDEFFTSGY 300
>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 85/213 (39%), Gaps = 49/213 (23%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSP-----LPSDQIADQKEFFAEI 472
A + ++ IG G +G+VY+A P S F+A+K P LP + + A +
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVRE----VALL 57
Query: 473 EALTKIRHRNIVKFYGFCSHARHS-----ILIYEYLKRGSLATNLSNDA----AAEEL-- 521
L H N+V+ C+ +R L++E++ + L T L AE +
Sbjct: 58 RRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ-DLRTYLDKAPPPGLPAETIKD 116
Query: 522 --------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561
D+ +N+L+ ++DFG+A+ + + +V T
Sbjct: 117 LMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALFPVVV-TL 175
Query: 562 RYVAPD------YRKKCDVYSFRVLALEVIKGK 588
Y AP+ Y D++S + E+ + K
Sbjct: 176 WYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRK 208
>pdb|3CEK|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(ttk)
pdb|3GFW|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrolo-Pyridin Ligand
Length = 313
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 98/263 (37%), Gaps = 60/263 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN--IVKF 486
IGSG V++ K+ A+K N +Q D + EI L K++ + I++
Sbjct: 36 IGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLD--SYRNEIAYLNKLQQHSDKIIRL 93
Query: 487 YGFCSHARHSILIYE-----------------------YLKRGSLATNLSNDAAAEELDI 523
Y + ++ ++ E Y K A + + D+
Sbjct: 94 YDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDL 153
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW--SALVGTYRYVAPDYRKKC--------- 572
N L+ ++ + DFGIA ++PD+++ + VGT Y+ P+ K
Sbjct: 154 KPANFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKS 212
Query: 573 --------DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM--RLDEMLDPRLPPPSPD 622
DV+S + + GK P +IN +L ++DP PD
Sbjct: 213 KSKISPKSDVWSLGCILYYMTYGK---------TPFQQIINQISKLHAIIDPNHEIEFPD 263
Query: 623 VQGKLISIMEVAFSCLDVSPESR 645
+ K + +V CL P+ R
Sbjct: 264 IPEK--DLQDVLKCCLKRDPKQR 284
>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75
pdb|4FV1|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek4
pdb|4FV2|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek5
pdb|4FV3|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek6
pdb|4FV4|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek7
pdb|4FV5|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek9
pdb|4FV8|A Chain A, Crystal Structure Of The Erk2 Complexed With E63
pdb|4FV9|A Chain A, Crystal Structure Of The Erk2 Complexed With E71
pdb|4G6N|A Chain A, Crystal Structure Of The Erk2
Length = 360
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 50/221 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A+KK + P + + EI+ L + RH NI+
Sbjct: 31 IGEGAYGMVCSAYDNVNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 87
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------SND------------------AAAEE 520
+ Y+ + + T+L SND A
Sbjct: 88 DIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH 147
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + L V T Y AP+ Y K
Sbjct: 148 RDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTK 207
Query: 571 KCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS 602
D++S + E++ GKH + IL SPS
Sbjct: 208 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 248
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 200 DLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIP 259
DLS + I + F L +L L N++ + LT L LNLS N S+
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340
Query: 260 ESLGNLLKLHYLDLSKYQFIQELPKE--LGKLVQLSELELSHNFLGREIPSQI 310
NL KL LDLS Y I+ L + LG L L EL L N L + +P I
Sbjct: 341 RMFENLDKLEVLDLS-YNHIRALGDQSFLG-LPNLKELALDTNQL-KSVPDGI 390
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 43/107 (40%), Gaps = 8/107 (7%)
Query: 153 ISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPK 212
I DN F+G L LN+S N + NL L DLS NHI +
Sbjct: 314 IDDNAFWG--------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365
Query: 213 EFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIP 259
F L +L +L L NQL LT L+ + L TN + P
Sbjct: 366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
>pdb|3ENM|A Chain A, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|B Chain B, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|C Chain C, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|D Chain D, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
Length = 316
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 65/301 (21%), Positives = 109/301 (36%), Gaps = 67/301 (22%)
Query: 405 LSFKGKFDYVEIIRAINDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIA 463
L F+G + E+ +D + +G G +G V + +PS + AVK+ + + S +
Sbjct: 20 LYFQGAXENFEV--KADDLEPIXELGRGAYGVVEKXRHVPSGQIXAVKRIRATVNSQE-- 75
Query: 464 DQKEFFAEIEALTKIRHRNI-----VKFYG---------FCSHARHSILIYEYLKRGSLA 509
QK +++ I R + V FYG C + L Y +
Sbjct: 76 -QKRLLXDLD----ISXRTVDCPFTVTFYGALFREGDVWICXELXDTSLDKFYKQVIDKG 130
Query: 510 TNLSND----------AAAEEL---------DISSKNVLLDLEHKAHVSDFGIAKFLKPD 550
+ D A E L D+ NVL++ + DFGI+ +L D
Sbjct: 131 QTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKXCDFGISGYLVDD 190
Query: 551 SSNWSALVGTYRYVAPD----------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPS 600
+ G Y AP+ Y K D++S + +E+ + P +
Sbjct: 191 VAK-DIDAGCKPYXAPERINPELNQKGYSVKSDIWSLGITXIELAILRFPYDSWGTPF-- 247
Query: 601 PSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFS--CLDVSPESRPTMQTITQQLLFS 658
+ L + PSP + S V F+ CL + + RPT + Q F+
Sbjct: 248 ---------QQLKQVVEEPSPQLPADKFSAEFVDFTSQCLKKNSKERPTYPELXQHPFFT 298
Query: 659 L 659
L
Sbjct: 299 L 299
>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3O8U|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 30 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 87
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 88 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 147
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + D+G+A+ + + + V T Y AP+ Y +
Sbjct: 148 HRDLKPSNLAVNEDCELKILDYGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 204
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 205 DIWSVGCIMAELLTGR 220
>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1
(Plk1) Catalytic Domain In Complex With Adp
Length = 317
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVY 575
D+ N+ L+ + + DFG+A ++ D L GT Y+AP+ + + D++
Sbjct: 167 DLKLGNLFLNDDMDVKIGDFGLATKIEFDGERKKXLCGTPNYIAPEVLCKKGHSFEVDIW 226
Query: 576 SFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAF 635
S + ++ GK P F +S L + I ++ +E PR P V LI M
Sbjct: 227 SLGCILYTLLVGKPP--FETSCLKE-TYIRIKKNEYSVPRHINP---VASALIRRM---- 276
Query: 636 SCLDVSPESRPTMQTITQQLLFSLVY 661
L P RP++ + F+ Y
Sbjct: 277 --LHADPTLRPSVAELLTDEFFTSGY 300
>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94
pdb|4G6O|A Chain A, Crystal Structure Of The Erk2
Length = 360
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 50/221 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A+KK + P + + EI+ L + RH NI+
Sbjct: 31 IGEGAYGMVCSAYDNVNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 87
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------SND------------------AAAEE 520
+ Y+ + + T+L SND A
Sbjct: 88 DIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH 147
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + L V T Y AP+ Y K
Sbjct: 148 RDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTK 207
Query: 571 KCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS 602
D++S + E++ GKH + IL SPS
Sbjct: 208 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 248
>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 902
pdb|3D5X|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Wortmannin.
pdb|3DBE|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 557
pdb|3DBF|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 562
Length = 301
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVY 575
D+ N+ L+ + + DFG+A ++ D L GT Y+AP+ + + D++
Sbjct: 151 DLKLGNLFLNDDMDVKIGDFGLATKIEFDGERKKDLCGTPNYIAPEVLCKKGHSFEVDIW 210
Query: 576 SFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAF 635
S + ++ GK P F +S L + I ++ +E PR P V LI M
Sbjct: 211 SLGCILYTLLVGKPP--FETSCLKE-TYIRIKKNEYSVPRHINP---VASALIRRM---- 260
Query: 636 SCLDVSPESRPTMQTITQQLLFSLVY 661
L P RP++ + F+ Y
Sbjct: 261 --LHADPTLRPSVAELLTDEFFTSGY 284
>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia
pdb|3GC0|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia In
Complex With Amp
Length = 329
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+G G +G VY+A + + E +A+K+ L ++ E+ L +++HRNI++
Sbjct: 42 LGEGTYGEVYKAIDTVTNETVAIKRIR--LEHEEEGVPGTAIREVSLLKELQHRNIIELK 99
Query: 488 GFCSHARHSILIYEY 502
H LI+EY
Sbjct: 100 SVIHHNHRLHLIFEY 114
>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor
pdb|3QYZ|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor
pdb|4GT3|A Chain A, Atp-Bound Form Of The Erk2 Kinase
pdb|4GVA|A Chain A, Adp-Bound Form Of The Erk2 Kinase
Length = 364
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 50/221 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A+KK + P + + EI+ L + RH NI+
Sbjct: 35 IGEGAYGMVCSAYDNLNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 91
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------SND------------------AAAEE 520
+ Y+ + + T+L SND A
Sbjct: 92 DIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH 151
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + L V T Y AP+ Y K
Sbjct: 152 RDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTK 211
Query: 571 KCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS 602
D++S + E++ GKH + IL SPS
Sbjct: 212 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 252
>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9Z|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 85/213 (39%), Gaps = 49/213 (23%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSP-----LPSDQIADQKEFFAEI 472
A + ++ IG G +G+VY+A P S F+A+K P LP + + A +
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVRE----VALL 57
Query: 473 EALTKIRHRNIVKFYGFCSHARHS-----ILIYEYLKRGSLATNLSNDA----AAEEL-- 521
L H N+V+ C+ +R L++E++ + L T L AE +
Sbjct: 58 RRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ-DLRTYLDKAPPPGLPAETIKD 116
Query: 522 --------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561
D+ +N+L+ ++DFG+A+ + + +V T
Sbjct: 117 LMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMA-LAPVVVTL 175
Query: 562 RYVAPD------YRKKCDVYSFRVLALEVIKGK 588
Y AP+ Y D++S + E+ + K
Sbjct: 176 WYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRK 208
>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol
pdb|4FUY|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek2
pdb|4FV0|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek3
Length = 360
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 50/221 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A+KK + P + + EI+ L + RH NI+
Sbjct: 31 IGEGAYGMVCSAYDNVNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 87
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------SND------------------AAAEE 520
+ Y+ + + T+L SND A
Sbjct: 88 DIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH 147
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + L V T Y AP+ Y K
Sbjct: 148 RDLKPSNLLLNTTXDLKIXDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTK 207
Query: 571 KCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS 602
D++S + E++ GKH + IL SPS
Sbjct: 208 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 248
>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase,
Kinase: An Active Protein Kinase Complexed With
Nucleotide, Substrate-Analogue And Product
Length = 298
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 84/213 (39%), Gaps = 44/213 (20%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFN----SPLPSDQIADQKEF-FAEIEA 474
+++ K +G G V R P+ + AVK + ++++ + +E E++
Sbjct: 17 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDI 76
Query: 475 LTKIR-HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------- 520
L K+ H NI++ L+++ +K+G L L+ E
Sbjct: 77 LRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEV 136
Query: 521 -----------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-- 567
D+ +N+LLD + ++DFG + L P + GT Y+AP+
Sbjct: 137 ICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDP-GEKLREVCGTPSYLAPEII 195
Query: 568 ----------YRKKCDVYSFRVLALEVIKGKHP 590
Y K+ D++S V+ ++ G P
Sbjct: 196 ECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPP 228
>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With
N,n-dimethyl-4-(4-
Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide
pdb|2OJI|A Chain A, Crystal Structure Of Erk2 In Complex With
N-Benzyl-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|2OJJ|A Chain A, Crystal Structure Of Erk2 In Complex With (S)-N-(1-(3-
Chloro-4-Fluorophenyl)-2-Hydroxyethyl)-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|3I5Z|A Chain A, Crystal Structure Of Erk2 Bound To
(S)-N-(2-Hydroxy-1-Phenylethyl)-4-
(5-Methyl-2-(Phenylamino)pyrimidin-4-Yl)-1h-Pyrrole-2-
Carboxamide
pdb|3I60|A Chain A, Crystal Structure Of Erk2 Bound To
(s)-4-(2-(2-chlorophenylamino)-5-
Methylpyrimidin-4-yl)-n-(2-hydroxy-1-phenylethyl)-1h-
pyrrole-2- Carboxamide
Length = 380
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 50/221 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A+KK + P + + EI+ L + RH NI+
Sbjct: 51 IGEGAYGMVCSAYDNVNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 107
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------SND------------------AAAEE 520
+ Y+ + + T+L SND A
Sbjct: 108 DIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH 167
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + L V T Y AP+ Y K
Sbjct: 168 RDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTK 227
Query: 571 KCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS 602
D++S + E++ GKH + IL SPS
Sbjct: 228 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 268
>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A
Pyrazolopyridazine Derivative
pdb|3W55|A Chain A, The Structure Of Erk2 In Complex With Fr148083
Length = 368
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 50/221 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A+KK + P + + EI+ L + RH NI+
Sbjct: 39 IGEGAYGMVCSAYDNVNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 95
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------SND------------------AAAEE 520
+ Y+ + + T+L SND A
Sbjct: 96 DIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH 155
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + L V T Y AP+ Y K
Sbjct: 156 RDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTK 215
Query: 571 KCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS 602
D++S + E++ GKH + IL SPS
Sbjct: 216 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 256
>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule
Inhibitor
Length = 368
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 50/221 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A+KK + P + + EI+ L + RH NI+
Sbjct: 31 IGEGAYGMVCSAYDNVNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 87
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------SND------------------AAAEE 520
+ Y+ + + T+L SND A
Sbjct: 88 DIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH 147
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + L V T Y AP+ Y K
Sbjct: 148 RDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTK 207
Query: 571 KCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS 602
D++S + E++ GKH + IL SPS
Sbjct: 208 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 248
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 63/158 (39%), Gaps = 36/158 (22%)
Query: 123 NLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNI 182
NL + L N++ SEAF NL +LD+S N+ L TL+ +
Sbjct: 65 NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH--------------LHTLDEFL--- 107
Query: 183 TRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI---- 238
+L L L NHIV F + L KL L NQ I P E+
Sbjct: 108 -------FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDG 159
Query: 239 GSLTKLEFLNLSTNRFSSL-------IPESLGNLLKLH 269
L KL L+LS+N+ L +P + N L LH
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 62/162 (38%), Gaps = 18/162 (11%)
Query: 127 ISLEGNNMRGTISEAFG--IYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITR 184
+SL N + T F + NLT LD+S NN ++ P L L++ NNI R
Sbjct: 227 LSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQR 286
Query: 185 SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKL 244
P LS L LSL K ++ + L L
Sbjct: 287 LSPRSFYGLSNLRY--LSLKRAFTKQSVSLASHPNIDDFSFQW-------------LKYL 331
Query: 245 EFLNLSTNRFSSLIPESLGNLLKLHYLDLSK-YQFIQELPKE 285
E+LN+ N S + L+ L YL LSK + +Q L E
Sbjct: 332 EYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNE 373
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 84/209 (40%), Gaps = 31/209 (14%)
Query: 76 LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMR 135
+TVL L +N N R L + G N P+ + P L ++L+ N +
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 136 GTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPK-LSTLNVSMNNIT----------- 183
+ F NLT LD+ N+ +I SN K K L L++S N ++
Sbjct: 87 QISDQTFVFCTNLTELDLMSNS-IHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLE 145
Query: 184 ---------------RSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGN 228
RS LE S+L + DLS N + P F + L L+L
Sbjct: 146 NLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNA 205
Query: 229 QLIGHLPSEIG---SLTKLEFLNLSTNRF 254
QL HL ++ S T ++ L+L+ N+
Sbjct: 206 QLNPHLTEKLCWELSNTSIQNLSLANNQL 234
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 121/317 (38%), Gaps = 35/317 (11%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLK--SLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
T+++ L L +N L + LK +L +L L N S L SLRYL L
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNH-----FRGPIP 115
NN+ P S L NLR+ + ++ + +H F
Sbjct: 282 NNIQRLSPRSFYGL-------------SNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWL 328
Query: 116 KCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISD-----NNFFGEIASNWGKCP 170
K L ++++ NN+ T S F ++L +L +S E + P
Sbjct: 329 KYLE------YLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSP 382
Query: 171 KLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIP-KEFGKLNSLTKLILRGNQ 229
L TLN++ N+I++ L L DL LN I K+ +E+ L ++ ++ L N+
Sbjct: 383 LL-TLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNK 441
Query: 230 LIGHLPSEIGSLTKLEFLNLSTNRFSS--LIPESLGNLLKLHYLDLSKYQFIQELPKELG 287
+ S + L+ L L + + P L L LDLS L
Sbjct: 442 YLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLE 501
Query: 288 KLVQLSELELSHNFLGR 304
L L L+ HN L R
Sbjct: 502 GLENLEILDFQHNNLAR 518
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase Domain
Co-crystallized With Gefitinib
Length = 329
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 105/273 (38%), Gaps = 60/273 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 17 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 76
Query: 473 EALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------------------------ 508
+ + ++ + G C + LI + + G L
Sbjct: 77 D------NPHVCRLLGICLTSTVQ-LIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIA 129
Query: 509 -ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVA 565
N D D++++NVL+ ++DFG AK L + + A G +++A
Sbjct: 130 KGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMA 189
Query: 566 PD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP
Sbjct: 190 LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQ 242
Query: 619 PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
P I + + C + +SRP + +
Sbjct: 243 PPICT----IDVYMIMRKCWMIDADSRPKFREL 271
>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 7 Activated Mutant (S287d, T291d)
Length = 318
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVA-----------PDYRK 570
D+ N+LLD + + DFGI+ L D + + G Y+A PDY
Sbjct: 150 DVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRS-AGCAAYMAPERIDPPDPTKPDYDI 208
Query: 571 KCDVYSFRVLALEVIKGKHP 590
+ DV+S + +E+ G+ P
Sbjct: 209 RADVWSLGISLVELATGQFP 228
>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain
Length = 343
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 98/263 (37%), Gaps = 60/263 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN--IVKF 486
IGSG V++ K+ A+K N +Q D + EI L K++ + I++
Sbjct: 17 IGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLD--SYRNEIAYLNKLQQHSDKIIRL 74
Query: 487 YGFCSHARHSILIYE-----------------------YLKRGSLATNLSNDAAAEELDI 523
Y + ++ ++ E Y K A + + D+
Sbjct: 75 YDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDL 134
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPDYRKKC--------- 572
N L+ ++ + DFGIA ++PD+++ + VGT Y+ P+ K
Sbjct: 135 KPANFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKS 193
Query: 573 --------DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM--RLDEMLDPRLPPPSPD 622
DV+S + + GK P +IN +L ++DP PD
Sbjct: 194 KSKISPKSDVWSLGCILYYMTYGK---------TPFQQIINQISKLHAIIDPNHEIEFPD 244
Query: 623 VQGKLISIMEVAFSCLDVSPESR 645
+ K + +V CL P+ R
Sbjct: 245 IPEK--DLQDVLKCCLKRDPKQR 265
>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain.
pdb|3DB8|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 041
pdb|3DBC|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 257
pdb|3DBD|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 094
Length = 317
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVY 575
D+ N+ L+ + + DFG+A ++ D L GT Y+AP+ + + D++
Sbjct: 167 DLKLGNLFLNDDMDVKIGDFGLATKIEFDGERKKDLCGTPNYIAPEVLCKKGHSFEVDIW 226
Query: 576 SFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAF 635
S + ++ GK P F +S L + I ++ +E PR P V LI M
Sbjct: 227 SLGCILYTLLVGKPP--FETSCLKE-TYIRIKKNEYSVPRHINP---VASALIRRM---- 276
Query: 636 SCLDVSPESRPTMQTITQQLLFSLVY 661
L P RP++ + F+ Y
Sbjct: 277 --LHADPTLRPSVAELLTDEFFTSGY 300
>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed
With A Specific Inhibitor Of Human P38 Map Kinase
Length = 380
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 91/240 (37%), Gaps = 55/240 (22%)
Query: 415 EIIRA-INDFDAKYC----IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEF 468
E++R + D +Y IG G +G V A + +K +A+KK + P + +
Sbjct: 32 EMVRGQVFDVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKIS---PFEHQTYCQRT 88
Query: 469 FAEIEALTKIRHRNIVKFYGFCS----HARHSILIYEYLKRGSL-----ATNLSND---- 515
EI+ L + RH NI+ + + +L L +LSND
Sbjct: 89 LREIKILLRFRHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLSNDHICY 148
Query: 516 --------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---V 558
A D+ N+LL+ + DFG+A+ PD + L V
Sbjct: 149 FLYQILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYV 208
Query: 559 GTYRYVAPD-------YRKKCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS 602
T Y AP+ Y K D++S + E++ GKH + IL SPS
Sbjct: 209 ATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 268
>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
pdb|2VN9|B Chain B, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
Length = 301
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 80/196 (40%), Gaps = 36/196 (18%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+G G V R ++P+ + A K N+ S + D ++ E ++H NIV+ +
Sbjct: 12 LGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSAR--DHQKLEREARICRLLKHPNIVRLH 69
Query: 488 GFCSHARHSILIYEYLKRGSL-----ATNLSNDAAAEEL-------------------DI 523
S L+++ + G L A ++A A D+
Sbjct: 70 DSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILESVNHCHLNGIVHRDL 129
Query: 524 SSKNVLLDLEHKA---HVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDV 574
+N+LL + K ++DFG+A ++ D W GT Y++P+ Y K D+
Sbjct: 130 KPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGYLSPEVLRKDPYGKPVDM 189
Query: 575 YSFRVLALEVIKGKHP 590
++ V+ ++ G P
Sbjct: 190 WACGVILYILLVGYPP 205
>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4FMQ|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
Length = 362
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 50/221 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A+KK + P + + EI+ L + RH NI+
Sbjct: 33 IGEGAYGMVCSAYDNVNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 89
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------SND------------------AAAEE 520
+ Y+ + + T+L SND A
Sbjct: 90 DIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH 149
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + L V T Y AP+ Y K
Sbjct: 150 RDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTK 209
Query: 571 KCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS 602
D++S + E++ GKH + IL SPS
Sbjct: 210 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 250
>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2
Length = 364
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 50/221 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A+KK + P + + EI+ L + RH NI+
Sbjct: 35 IGEGAYGMVCSAYDNLNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 91
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------SND------------------AAAEE 520
+ Y+ + + T+L SND A
Sbjct: 92 DIIRAPTIEQMKDVYIVQDLMETDLYKLLKCQHLSNDHICYFLYQILRGLKYIHSANVLH 151
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + L V T Y AP+ Y K
Sbjct: 152 RDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTK 211
Query: 571 KCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS 602
D++S + E++ GKH + IL SPS
Sbjct: 212 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 252
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 52/272 (19%), Positives = 107/272 (39%), Gaps = 58/272 (21%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAV-------KKFNSPLPSDQIADQKEFFAEI 472
+F +GSG G+VY+ +P E + + ++ SP + +I D+ A +
Sbjct: 17 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 76
Query: 473 EALTKIRHRNIVKFYGFCSHARHSIL--------IYEYLKRG----------------SL 508
+ + ++ + G C + ++ + +Y++ +
Sbjct: 77 D------NPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 130
Query: 509 ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAP 566
N D D++++NVL+ ++DFG AK L + + A G +++A
Sbjct: 131 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMAL 190
Query: 567 D------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619
+ Y + DV+S+ V E++ G P + + S I+ L++ RLP P
Sbjct: 191 ESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQP 243
Query: 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
I + + C + +SRP + +
Sbjct: 244 PICT----IDVYMIMRKCWMIDADSRPKFREL 271
>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57
Length = 360
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 50/221 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A+KK + P + + EI+ L + RH NI+
Sbjct: 31 IGEGAYGMVCSAYDNVNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 87
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------SND------------------AAAEE 520
+ Y+ + + T+L SND A
Sbjct: 88 DIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH 147
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + L V T Y AP+ Y K
Sbjct: 148 RDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTK 207
Query: 571 KCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS 602
D++S + E++ GKH + IL SPS
Sbjct: 208 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 248
>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
pdb|3OZ6|B Chain B, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
Length = 388
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 97/251 (38%), Gaps = 64/251 (25%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKF 486
+G G +G V+++ + + E +AVKK + D + F EI LT++ H NIV
Sbjct: 17 LGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNS--TDAQRTFREIMILTELSGHENIVNL 74
Query: 487 YGF--CSHARHSILIYEYLK-------RGSLATNLSNDAAAEEL---------------D 522
+ R L+++Y++ R ++ + +L D
Sbjct: 75 LNVLRADNDRDVYLVFDYMETDLHAVIRANILEPVHKQYVVYQLIKVIKYLHSGGLLHRD 134
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKF---------------------LKPDSSNWSALVGTY 561
+ N+LL+ E V+DFG+++ D + V T
Sbjct: 135 MKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATR 194
Query: 562 RYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP 614
Y AP+ Y K D++S + E++ GK I P S +N +L+ ++
Sbjct: 195 WYRAPEILLGSTKYTKGIDMWSLGCILGEILCGK-------PIFPGSSTMN-QLERIIGV 246
Query: 615 RLPPPSPDVQG 625
P + DV+
Sbjct: 247 IDFPSNEDVES 257
>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|C Chain C, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 364
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 50/221 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A+KK + P + + EI+ L + RH NI+
Sbjct: 35 IGEGAYGMVCSAYDNLNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 91
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------SND------------------AAAEE 520
+ Y+ + + T+L SND A
Sbjct: 92 DIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH 151
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + L V T Y AP+ Y K
Sbjct: 152 RDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLXEXVATRWYRAPEIMLNSKGYTK 211
Query: 571 KCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS 602
D++S + E++ GKH + IL SPS
Sbjct: 212 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 252
>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2
Length = 365
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 50/221 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A+KK + P + + EI+ L + RH NI+
Sbjct: 36 IGEGAYGMVCSAYDNLNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 92
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------SND------------------AAAEE 520
+ Y+ + + T+L SND A
Sbjct: 93 DIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH 152
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + L V T Y AP+ Y K
Sbjct: 153 RDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLXEXVATRWYRAPEIMLNSKGYTK 212
Query: 571 KCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS 602
D++S + E++ GKH + IL SPS
Sbjct: 213 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 253
>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 365
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 50/221 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A+KK + P + + EI+ L + RH NI+
Sbjct: 36 IGEGAYGMVCSAYDNLNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 92
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------SND------------------AAAEE 520
+ Y+ + + T+L SND A
Sbjct: 93 DIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH 152
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + L V T Y AP+ Y K
Sbjct: 153 RDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTK 212
Query: 571 KCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS 602
D++S + E++ GKH + IL SPS
Sbjct: 213 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 253
>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In
Complex With
(4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin
2-Yl]amino}phenyl)acetic Acid
Length = 366
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 50/221 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A+KK + P + + EI+ L + RH NI+
Sbjct: 37 IGEGAYGMVCSAYDNLNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 93
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------SND------------------AAAEE 520
+ Y+ + + T+L SND A
Sbjct: 94 DIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH 153
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + L V T Y AP+ Y K
Sbjct: 154 RDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTK 213
Query: 571 KCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS 602
D++S + E++ GKH + IL SPS
Sbjct: 214 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 254
>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently
Bound
pdb|3C9W|B Chain B, Crystal Structure Of Erk-2 With Hypothemycin Covalently
Bound
Length = 357
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 50/221 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A+KK + P + + EI+ L + RH NI+
Sbjct: 28 IGEGAYGMVCSAYDNLNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 84
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------SND------------------AAAEE 520
+ Y+ + + T+L SND A
Sbjct: 85 DIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH 144
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + L V T Y AP+ Y K
Sbjct: 145 RDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTK 204
Query: 571 KCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS 602
D++S + E++ GKH + IL SPS
Sbjct: 205 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 245
>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived
From Mkp3
pdb|2FYS|A Chain A, Crystal Structure Of Erk2 Complex With Kim Peptide Derived
From Mkp3
pdb|1ERK|A Chain A, Structure Of Signal-Regulated Kinase
pdb|3ERK|A Chain A, The Complex Structure Of The Map Kinase Erk2SB220025
pdb|4ERK|A Chain A, The Complex Structure Of The Map Kinase Erk2OLOMOUCINE
pdb|3QYI|A Chain A, Map Kinase Erk2 Complexed With
1,1-Dioxo-2,3-Dihydrothiophen-3-Yl Benzenesulfonate
Length = 364
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 50/221 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A+KK + P + + EI+ L + RH NI+
Sbjct: 35 IGEGAYGMVCSAYDNLNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 91
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------SND------------------AAAEE 520
+ Y+ + + T+L SND A
Sbjct: 92 DIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH 151
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + L V T Y AP+ Y K
Sbjct: 152 RDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTK 211
Query: 571 KCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS 602
D++S + E++ GKH + IL SPS
Sbjct: 212 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 252
>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX
Length = 358
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 50/221 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A+KK + P + + EI+ L + RH NI+
Sbjct: 29 IGEGAYGMVCSAYDNLNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 85
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------SND------------------AAAEE 520
+ Y+ + + T+L SND A
Sbjct: 86 DIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH 145
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + L V T Y AP+ Y K
Sbjct: 146 RDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTK 205
Query: 571 KCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS 602
D++S + E++ GKH + IL SPS
Sbjct: 206 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 246
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 210 IPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLH 269
+PK G +T+L L GNQ +P E+ + L ++LS NR S+L +S N+ +L
Sbjct: 25 LPK--GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81
Query: 270 YLDLSKYQFIQELPKELGKLVQLSELELSHN 300
L LS + P+ L L L L N
Sbjct: 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 186 IPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLE 245
+P E+ N L DLS N I + F + L LIL N+L P L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 246 FLNLSTNRFSSLIPESLGNLL 266
L+L N S++PE N L
Sbjct: 106 LLSLHGNDI-SVVPEGAFNDL 125
>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 84/213 (39%), Gaps = 49/213 (23%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSP-----LPSDQIADQKEFFAEI 472
A + ++ IG G +G+VY+A P S F+A+K P LP + + A +
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVRE----VALL 57
Query: 473 EALTKIRHRNIVKFYGFCSHARHS-----ILIYEYLKRGSLATNLSNDA----AAEEL-- 521
L H N+V+ C+ +R L++E++ + L T L AE +
Sbjct: 58 RRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ-DLRTYLDKAPPPGLPAETIKD 116
Query: 522 --------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561
D+ +N+L+ ++DFG+A+ + +V T
Sbjct: 117 LMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMA-LDPVVVTL 175
Query: 562 RYVAPD------YRKKCDVYSFRVLALEVIKGK 588
Y AP+ Y D++S + E+ + K
Sbjct: 176 WYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRK 208
>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 327
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 80/196 (40%), Gaps = 36/196 (18%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+G G V R ++P+ + A K N+ S + D ++ E ++H NIV+ +
Sbjct: 12 LGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSAR--DHQKLEREARICRLLKHPNIVRLH 69
Query: 488 GFCSHARHSILIYEYLKRGSL-----ATNLSNDAAAEEL-------------------DI 523
S L+++ + G L A ++A A D+
Sbjct: 70 DSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILESVNHCHLNGIVHRDL 129
Query: 524 SSKNVLLDLEHKA---HVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDV 574
+N+LL + K ++DFG+A ++ D W GT Y++P+ Y K D+
Sbjct: 130 KPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGYLSPEVLRKDPYGKPVDM 189
Query: 575 YSFRVLALEVIKGKHP 590
++ V+ ++ G P
Sbjct: 190 WACGVILYILLVGYPP 205
>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|C Chain C, Crystal Structure Of Cdk4CYCLIN D3
Length = 308
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 85/216 (39%), Gaps = 52/216 (24%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSP--------LPSDQIADQKEFF 469
A + ++ IG G +G+VY+A P S F+A+K P LP + +
Sbjct: 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVRE----V 62
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHS-----ILIYEYLKRGSLATNLSNDA----AAEE 520
A + L H N+V+ C+ +R L++E++ + L T L AE
Sbjct: 63 ALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ-DLRTYLDKAPPPGLPAET 121
Query: 521 L----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV 558
+ D+ +N+L+ ++DFG+A+ + + +V
Sbjct: 122 IKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMA-LTPVV 180
Query: 559 GTYRYVAPD------YRKKCDVYSFRVLALEVIKGK 588
T Y AP+ Y D++S + E+ + K
Sbjct: 181 VTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRK 216
>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
Length = 362
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 83/221 (37%), Gaps = 50/221 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A+KK + P + + EI+ L RH NI+
Sbjct: 33 IGEGAYGMVCSAYDNVNKVRVAIKKIS---PFEHQTYCQRTLREIKILLAFRHENIIGIN 89
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------SND------------------AAAEE 520
+ Y+ + + T+L SND A
Sbjct: 90 DIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH 149
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + L V T Y AP+ Y K
Sbjct: 150 RDLKPSNLLLNTTSDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTK 209
Query: 571 KCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS 602
D++S + E++ GKH + IL SPS
Sbjct: 210 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 250
>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3
Length = 361
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 83/210 (39%), Gaps = 42/210 (20%)
Query: 416 IIRAINDFDAKYCIGSGRHG--SVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIE 473
I+ + +D IGSG G + R +L +KE +AVK D+ + EI
Sbjct: 15 IMHDSDRYDFVKDIGSGNFGVARLMRDKL-TKELVAVKYIERGAAIDENVQR-----EII 68
Query: 474 ALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAA---EEL--- 521
+RH NIV+F H +I EY G L A S D A ++L
Sbjct: 69 NHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYERICNAGRFSEDEARFFFQQLLSG 128
Query: 522 ------------DISSKNVLLD--LEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD 567
D+ +N LLD + + DFG +K S S VGT Y+AP+
Sbjct: 129 VSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKST-VGTPAYIAPE 187
Query: 568 Y-------RKKCDVYSFRVLALEVIKGKHP 590
K DV+S V ++ G +P
Sbjct: 188 VLLRQEYDGKIADVWSCGVTLYVMLVGAYP 217
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 122/313 (38%), Gaps = 27/313 (8%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLK--SLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
T++R L L ++ L+ T LK +L L L N S L L Y FL
Sbjct: 232 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 291
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
NN+ S+ L N NL+ + + + + F KCL
Sbjct: 292 NNIQHLFSHSLHGLF--------NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE- 342
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDN-----NFFGEIASNWGKCPKLSTL 175
+++E N++ G S F +NL +L +S++ E + P L L
Sbjct: 343 -----HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP-LHIL 396
Query: 176 NVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIP-KEFGKLNSLTKLILRGN---QLI 231
N++ N I++ L L DL LN I ++ +E+ L ++ ++ L N QL
Sbjct: 397 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 456
Query: 232 GHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQ 291
+ + + SL +L ++ S P L L LDLS L L +
Sbjct: 457 RNSFALVPSLQRLMLRRVALKNVDS-SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 515
Query: 292 LSELELSHNFLGR 304
L L+L HN L R
Sbjct: 516 LEILDLQHNNLAR 528
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 147 NLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHI 206
N+T L+++ N A+N+ + +L++L+V N I++ P L L +L N +
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Query: 207 VGKIPKEFGKLNSLTKLILRGNQL 230
K F +LT+L L N +
Sbjct: 96 SQLSDKTFAFCTNLTELHLMSNSI 119
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 122/313 (38%), Gaps = 27/313 (8%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLK--SLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
T++R L L ++ L+ T LK +L L L N S L L Y FL
Sbjct: 227 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 286
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
NN+ S+ L N NL+ + + + + F KCL
Sbjct: 287 NNIQHLFSHSLHGLF--------NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE- 337
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDN-----NFFGEIASNWGKCPKLSTL 175
+++E N++ G S F +NL +L +S++ E + P L L
Sbjct: 338 -----HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP-LHIL 391
Query: 176 NVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIP-KEFGKLNSLTKLILRGN---QLI 231
N++ N I++ L L DL LN I ++ +E+ L ++ ++ L N QL
Sbjct: 392 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 451
Query: 232 GHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQ 291
+ + + SL +L ++ S P L L LDLS L L +
Sbjct: 452 RNSFALVPSLQRLMLRRVALKNVDS-SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 510
Query: 292 LSELELSHNFLGR 304
L L+L HN L R
Sbjct: 511 LEILDLQHNNLAR 523
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 147 NLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHI 206
N+T L+++ N A+N+ + +L++L+V N I++ P L L +L N +
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
Query: 207 VGKIPKEFGKLNSLTKLILRGNQL 230
K F +LT+L L N +
Sbjct: 91 SQLSDKTFAFCTNLTELHLMSNSI 114
>pdb|1X8B|A Chain A, Structure Of Human Wee1a Kinase: Kinase Domain Complexed
With Inhibitor Pd0407824
Length = 289
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 418 RAINDFDAKYCIGSGRHGSVYR-AELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT 476
R +F IGSG GSV++ + A+K+ PL D++ E+ A
Sbjct: 8 RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGS--VDEQNALREVYAHA 65
Query: 477 KI-RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSND 515
+ +H ++V+++ + H ++ EY GSLA +S +
Sbjct: 66 VLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISEN 105
>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e)
Length = 358
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 76/198 (38%), Gaps = 41/198 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A+KK + P + + EI+ L + RH NI+
Sbjct: 29 IGEGAYGMVCSAYDNLNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 85
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------SND------------------AAAEE 520
+ Y+ + + T+L SND A
Sbjct: 86 DIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH 145
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + L V T Y AP+ Y K
Sbjct: 146 RDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTK 205
Query: 571 KCDVYSFRVLALEVIKGK 588
D++S + E++ +
Sbjct: 206 SIDIWSVGCILAEMLSNR 223
>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In
Complex With P38 Map Kinase
Length = 360
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 82/197 (41%), Gaps = 43/197 (21%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 30 VGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 87
Query: 488 GFCSHARHSILIYE--YLKRGSLATNLSNDAAAEEL------------------------ 521
+ AR S+ + YL + +L+N ++L
Sbjct: 88 DVFTPAR-SLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADI 146
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKK 571
D+ N+ ++ + + + DF +A+ + + + V T Y AP+ Y +
Sbjct: 147 IHRDLKPSNLAVNEDCELKILDFYLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQT 203
Query: 572 CDVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 204 VDIWSVGCIMAELLTGR 220
>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent
Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In
Complex With Sto-609
Length = 298
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 46/215 (21%)
Query: 466 KEFFAEIEALTKIRHRNIVKFYGFCS--HARHSILIYEYLKRGSLA-----TNLSNDAAA 518
++ + EI L K+ H N+VK + H +++E + +G + LS D A
Sbjct: 81 EQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQAR 140
Query: 519 ---EEL---------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT 560
++L DI N+L+ + ++DFG++ K + S VGT
Sbjct: 141 FYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGT 200
Query: 561 YRYVAPD---------YRKKCDVYSFRVLALEVIKGKHPRGFVSS-ILPSPSVINMRLDE 610
++AP+ K DV++ V + G+ P F+ I+ S I + E
Sbjct: 201 PAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCP--FMDERIMCLHSKIKSQALE 258
Query: 611 MLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESR 645
P PD+ L ++ LD +PESR
Sbjct: 259 F------PDQPDIAEDLKDLIT---RMLDKNPESR 284
>pdb|3BI6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd352396
pdb|3BIZ|A Chain A, Wee1 Kinase Complex With Inhibitor Pd331618
pdb|3CQE|A Chain A, Wee1 Kinase Complex With Inhibitor Pd074291
pdb|3CR0|A Chain A, Wee1 Kinase Complex With Inhibitor Pd259_809
Length = 287
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 418 RAINDFDAKYCIGSGRHGSVYR-AELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT 476
R +F IGSG GSV++ + A+K+ PL D++ E+ A
Sbjct: 6 RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGS--VDEQNALREVYAHA 63
Query: 477 KI-RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSND 515
+ +H ++V+++ + H ++ EY GSLA +S +
Sbjct: 64 VLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISEN 103
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 72/199 (36%), Gaps = 44/199 (22%)
Query: 148 LTFLDISDNNFFGEIASNWGKCPK------LSTLNVSMNNITRSIPLEIGN-LSTLNEFD 200
L+F ++ N+ + ++ +WGKC L L+VS N T I N +S F
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235
Query: 201 LSL-NHIVG--------KIPKE----------------------------FGKLNSLTKL 223
L L +HI+G K P + F L L L
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295
Query: 224 ILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELP 283
L N++ L L+ LNLS N L + L K+ Y+DL K
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355
Query: 284 KELGKLVQLSELELSHNFL 302
+ L +L L+L N L
Sbjct: 356 QTFKFLEKLQTLDLRDNAL 374
>pdb|2IN6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd311839
pdb|2IO6|A Chain A, Wee1 Kinase Complexed With Inhibitor Pd330961
Length = 287
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 418 RAINDFDAKYCIGSGRHGSVYR-AELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT 476
R +F IGSG GSV++ + A+K+ PL D++ E+ A
Sbjct: 6 RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGS--VDEQNALREVYAHA 63
Query: 477 KI-RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSND 515
+ +H ++V+++ + H ++ EY GSLA +S +
Sbjct: 64 VLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISEN 103
>pdb|2Z2W|A Chain A, Humand Wee1 Kinase Complexed With Inhibitor Pf0335770
Length = 285
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 418 RAINDFDAKYCIGSGRHGSVYR-AELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT 476
R +F IGSG GSV++ + A+K+ PL D++ E+ A
Sbjct: 4 RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGS--VDEQNALREVYAHA 61
Query: 477 KI-RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSND 515
+ +H ++V+++ + H ++ EY GSLA +S +
Sbjct: 62 VLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISEN 101
>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
Length = 328
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 57/156 (36%), Gaps = 32/156 (20%)
Query: 466 KEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE----- 520
++ F E+ + + H NIVK + + LI EY G + L +E
Sbjct: 59 QKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARS 118
Query: 521 -------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561
D+ ++N+LLD + ++DFG + A G
Sbjct: 119 KFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTV-GGKLDAFCGAP 177
Query: 562 RYVAPDYRK-------KCDVYSFRVLALEVIKGKHP 590
Y AP+ + + DV+S V+ ++ G P
Sbjct: 178 PYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLP 213
>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|E Chain E, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|F Chain F, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
Length = 303
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 60/300 (20%), Positives = 112/300 (37%), Gaps = 85/300 (28%)
Query: 417 IRAINDFDAKYCIGSGRHGSVYRAE--LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEA 474
+R +DF+ +G G G V +A L S+ + A+KK ++++ +E+
Sbjct: 2 LRYASDFEEIAVLGQGAFGQVVKARNALDSR-YYAIKKIRHT--EEKLS---TILSEVXL 55
Query: 475 LTKIRHRNIVKFYGFCSHARHSI-------------LIYEYLKRGSLATNLSNDAAAEEL 521
L + H+ +V++Y R+ + + EY + +L + ++ ++
Sbjct: 56 LASLNHQYVVRYYAAWLERRNFVKPXTAVKKKSTLFIQXEYCENRTLYDLIHSENLNQQR 115
Query: 522 D-------------------------ISSKNVLLDLEHKAHVSDFGIAK-------FLKP 549
D + N+ +D + DFG+AK LK
Sbjct: 116 DEYWRLFRQILEALSYIHSQGIIHRNLKPXNIFIDESRNVKIGDFGLAKNVHRSLDILKL 175
Query: 550 D-------SSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVS 595
D S N ++ +GT YVA + Y +K D YS ++ E I
Sbjct: 176 DSQNLPGSSDNLTSAIGTAXYVATEVLDGTGHYNEKIDXYSLGIIFFEXIYPFSTGXERV 235
Query: 596 SILPSPSVINMRLDEMLDPRLPPPSPD----VQGKLISIMEVAFSCLDVSPESRPTMQTI 651
+IL +++ PP D V+ K+I ++ +D P RP +T+
Sbjct: 236 NILKKLRSVSI--------EFPPDFDDNKXKVEKKIIRLL------IDHDPNKRPGARTL 281
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 122/313 (38%), Gaps = 27/313 (8%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLK--SLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
T++R L L ++ L+ T LK +L L L N S L L Y FL
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
NN+ S+ L N NL+ + + + + F KCL
Sbjct: 282 NNIQHLFSHSLHGLF--------NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE- 332
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDN-----NFFGEIASNWGKCPKLSTL 175
+++E N++ G S F +NL +L +S++ E + P L L
Sbjct: 333 -----HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP-LHIL 386
Query: 176 NVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIP-KEFGKLNSLTKLILRGN---QLI 231
N++ N I++ L L DL LN I ++ +E+ L ++ ++ L N QL
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446
Query: 232 GHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQ 291
+ + + SL +L ++ S P L L LDLS L L +
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDS-SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505
Query: 292 LSELELSHNFLGR 304
L L+L HN L R
Sbjct: 506 LEILDLQHNNLAR 518
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 147 NLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHI 206
N+T L+++ N A+N+ + +L++L+V N I++ P L L +L N +
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 207 VGKIPKEFGKLNSLTKLILRGNQL 230
K F +LT+L L N +
Sbjct: 86 SQLSDKTFAFCTNLTELHLMSNSI 109
>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
pdb|3MPA|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 80/196 (40%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 30 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 87
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 88 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 147
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + FG+A+ + + + V T Y AP+ Y +
Sbjct: 148 HRDLKPSNLAVNEDCELKILGFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 204
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 205 DIWSVGCIMAELLTGR 220
>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4H3P|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4H3P|D Chain D, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
Length = 362
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 83/221 (37%), Gaps = 50/221 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A+KK + P + + EI+ L RH NI+
Sbjct: 33 IGEGAYGMVCSAYDNVNKVRVAIKKIS---PFEHQTYCQRTLREIKILLAFRHENIIGIN 89
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------SND------------------AAAEE 520
+ Y+ + + T+L SND A
Sbjct: 90 DIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH 149
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + L V T Y AP+ Y K
Sbjct: 150 RDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTK 209
Query: 571 KCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS 602
D++S + E++ GKH + IL SPS
Sbjct: 210 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 250
>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine
Mutation At Position 52
Length = 364
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 84/221 (38%), Gaps = 50/221 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A++K + P + + EI+ L + RH NI+
Sbjct: 35 IGEGAYGMVCSAYDNLNKVRVAIRKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 91
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------SND------------------AAAEE 520
+ Y+ + + T+L SND A
Sbjct: 92 DIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH 151
Query: 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + L V T Y AP+ Y K
Sbjct: 152 RDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTK 211
Query: 571 KCDVYSFRVLALEVIK------GKH---PRGFVSSILPSPS 602
D++S + E++ GKH + IL SPS
Sbjct: 212 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 252
>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map
Kinase Jnk1
Length = 370
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 77/199 (38%), Gaps = 49/199 (24%)
Query: 429 IGSGRHGSV---YRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK 485
IGSG G V Y A L +A+KK + P + A K + E+ + + H+NI+
Sbjct: 32 IGSGAQGIVCAAYDAILERN--VAIKKLSRPFQNQTHA--KRAYRELVLMKVVNHKNIIG 87
Query: 486 FYGFCS-------------------------------HARHSILIYEYLKRGSLATNLSN 514
+ H R S L+Y+ L + +
Sbjct: 88 LLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQMELDHERMSYLLYQML----VGIKHLH 143
Query: 515 DAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------Y 568
A D+ N+++ + + DFG+A+ S + V T Y AP+ Y
Sbjct: 144 SAGIIHRDLKPSNIVVKSDATLKILDFGLAR-TAGTSFMMTPYVVTRYYRAPEVILGMGY 202
Query: 569 RKKCDVYSFRVLALEVIKG 587
++ D++S V+ E+IKG
Sbjct: 203 KENVDIWSVGVIMGEMIKG 221
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 172 LSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLI 231
L LN++M N+ R IP + L L+E DLS NH+ P F L L KL + +Q+
Sbjct: 187 LRYLNLAMCNL-REIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244
Query: 232 GHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLD 272
+ +L L +NL+ N +L+P L LH+L+
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNL-TLLPHDL--FTPLHHLE 282
>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map
Kinase Jnk1
Length = 370
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 77/197 (39%), Gaps = 45/197 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IGSG G V A + + +A+KK + P + A K + E+ + + H+NI+
Sbjct: 32 IGSGAQGIVVAAYDAILERNVAIKKLSRPFQNQTHA--KRAYRELVLMKVVNHKNIIGLL 89
Query: 488 GFCS-------------------------------HARHSILIYEYLKRGSLATNLSNDA 516
+ H R S L+Y+ L + + A
Sbjct: 90 NVFTPQKSLEEFQDVYIVMELMDANLSQVIQMELDHERMSYLLYQML----VGIKHLHSA 145
Query: 517 AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRK 570
D+ N+++ + + DFG+A+ S + V T Y AP+ Y++
Sbjct: 146 GIIHRDLKPSNIVVKSDATLKILDFGLAR-TAGTSFMMTPYVVTRYYRAPEVILGMGYKE 204
Query: 571 KCDVYSFRVLALEVIKG 587
D++S V+ E+IKG
Sbjct: 205 NVDIWSVGVIMGEMIKG 221
>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With Atp
pdb|3HMO|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With The Inhibitor Staurosporine
pdb|3HMP|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With A Quinazolin Ligand Compound 4
Length = 342
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 98/263 (37%), Gaps = 60/263 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN--IVKF 486
IGSG V++ K+ A+K N +Q D + EI L K++ + I++
Sbjct: 64 IGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLD--SYRNEIAYLNKLQQHSDKIIRL 121
Query: 487 YGFCSHARHSILIYE-----------------------YLKRGSLATNLSNDAAAEELDI 523
Y + ++ ++ E Y K A + + D+
Sbjct: 122 YDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDL 181
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPDYRKKC--------- 572
N L+ ++ + DFGIA ++PD+++ + VGT Y+ P+ K
Sbjct: 182 KPANFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKS 240
Query: 573 --------DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM--RLDEMLDPRLPPPSPD 622
DV+S + + GK P +IN +L ++DP PD
Sbjct: 241 KSKISPKSDVWSLGCILYYMTYGK---------TPFQQIINQISKLHAIIDPNHEIEFPD 291
Query: 623 VQGKLISIMEVAFSCLDVSPESR 645
+ K + +V CL P+ R
Sbjct: 292 IPEK--DLQDVLKCCLKRDPKQR 312
>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3O8T|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg-Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 80/196 (40%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 30 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 87
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 88 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 147
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + D G+A+ + + + V T Y AP+ Y +
Sbjct: 148 HRDLKPSNLAVNEDCELKILDAGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 204
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 205 DIWSVGCIMAELLTGR 220
>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrimido-Diazepin Ligand
Length = 313
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 95/263 (36%), Gaps = 60/263 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN--IVKF 486
IGSG V++ K+ A+K N +Q D + EI L K++ + I++
Sbjct: 36 IGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLD--SYRNEIAYLNKLQQHSDKIIRL 93
Query: 487 YGFCSHARHSILIYE-----------------------YLKRGSLATNLSNDAAAEELDI 523
Y + ++ ++ E Y K A + + D+
Sbjct: 94 YDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDL 153
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW--SALVGTYRYVAPDYRKKC--------- 572
N L+ ++ + DFGIA ++PD + VGT Y+ P+ K
Sbjct: 154 KPANFLI-VDGMLKLIDFGIANQMQPDXXXVVKDSQVGTVNYMPPEAIKDMSSSRENGKS 212
Query: 573 --------DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM--RLDEMLDPRLPPPSPD 622
DV+S + + GK P +IN +L ++DP PD
Sbjct: 213 KSKISPKSDVWSLGCILYYMTYGK---------TPFQQIINQISKLHAIIDPNHEIEFPD 263
Query: 623 VQGKLISIMEVAFSCLDVSPESR 645
+ K + +V CL P+ R
Sbjct: 264 IPEK--DLQDVLKCCLKRDPKQR 284
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 22/89 (24%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLP----------------- 44
LTNL +L L +N ++ L P L L +L LG NQ P
Sbjct: 237 LTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 294
Query: 45 ---SSVGNLSSLRYLFLFENNLSGSIPPS 70
S + NL +L YL L+ NN+S P S
Sbjct: 295 EDISPISNLKNLTYLTLYFNNISDISPVS 323
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 5 LRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLS 64
L ELHL N +T + L +L KLGL N S+ N LR L L N L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 65 GSIPPSVGN-LMLTVLALENNHFTGNLRHNICRNG 98
+P + + + V+ L NN+ + ++ C G
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 32/252 (12%)
Query: 8 LHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSI 67
L L++N +T + + NLK+L L L N+ P + L L L+L +N L +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 68 PPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIV--GGNHFRGPIPKCLRNCPNLV 125
P + L L + N T +R ++ NG + ++V G N +
Sbjct: 116 PEKMPK-TLQELRVHENEIT-KVRKSVF-NGLNQMIVVELGTNPLKS------------- 159
Query: 126 RISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRS 185
G + AF L+++ I+D N G P L+ L++ N IT+
Sbjct: 160 ---------SGIENGAFQGMKKLSYIRIADTNI---TTIPQGLPPSLTELHLDGNKITKV 207
Query: 186 IPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLE 245
+ L+ L + LS N I L +L L N+L+ +P + ++
Sbjct: 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ 266
Query: 246 FLNLSTNRFSSL 257
+ L N S++
Sbjct: 267 VVYLHNNNISAI 278
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 199 FDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL- 257
DL N I +F L +L LIL N++ P L KLE L LS N+ L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 258 --IPESLGNLLKLHYLDLSKYQ 277
+P++L L++H +++K +
Sbjct: 117 EKMPKTLQE-LRVHENEITKVR 137
>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1
Catalytic Domain Apo Form
Length = 390
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 98/263 (37%), Gaps = 60/263 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN--IVKF 486
IGSG V++ K+ A+K N +Q D + EI L K++ + I++
Sbjct: 64 IGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLD--SYRNEIAYLNKLQQHSDKIIRL 121
Query: 487 YGFCSHARHSILIYE-----------------------YLKRGSLATNLSNDAAAEELDI 523
Y + ++ ++ E Y K A + + D+
Sbjct: 122 YDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDL 181
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPDYRKKC--------- 572
N L+ ++ + DFGIA ++PD+++ + VGT Y+ P+ K
Sbjct: 182 KPANFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKS 240
Query: 573 --------DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM--RLDEMLDPRLPPPSPD 622
DV+S + + GK P +IN +L ++DP PD
Sbjct: 241 KSKISPKSDVWSLGCILYYMTYGK---------TPFQQIINQISKLHAIIDPNHEIEFPD 291
Query: 623 VQGKLISIMEVAFSCLDVSPESR 645
+ K + +V CL P+ R
Sbjct: 292 IPEK--DLQDVLKCCLKRDPKQR 312
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 5 LRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLS 64
L ELHL N +T + L +L KLGL N S+ N LR L L N L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 65 GSIPPSVGN-LMLTVLALENNHFTGNLRHNICRNG 98
+P + + + V+ L NN+ + ++ C G
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 32/252 (12%)
Query: 8 LHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSI 67
L L++N +T + + NLK+L L L N+ P + L L L+L +N L +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 68 PPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIV--GGNHFRGPIPKCLRNCPNLV 125
P + L L + N T +R ++ NG + ++V G N +
Sbjct: 116 PEKMPK-TLQELRVHENEIT-KVRKSVF-NGLNQMIVVELGTNPLKS------------- 159
Query: 126 RISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRS 185
G + AF L+++ I+D N G P L+ L++ N IT+
Sbjct: 160 ---------SGIENGAFQGMKKLSYIRIADTNI---TTIPQGLPPSLTELHLDGNKITKV 207
Query: 186 IPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLE 245
+ L+ L + LS N I L +L L N+L+ +P + ++
Sbjct: 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ 266
Query: 246 FLNLSTNRFSSL 257
+ L N S++
Sbjct: 267 VVYLHNNNISAI 278
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 199 FDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL- 257
DL N I +F L +L LIL N++ P L KLE L LS N+ L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 258 --IPESLGNLLKLHYLDLSKYQ 277
+P++L L++H +++K +
Sbjct: 117 EKMPKTLQE-LRVHENEITKVR 137
>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent
Protein Kinase Ii Gamma
Length = 336
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 85/208 (40%), Gaps = 38/208 (18%)
Query: 418 RAINDFDAKYCIGSGRHGSVYRA--ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEAL 475
R +D+ +G G V R + P++E+ A K N+ S + D ++ E
Sbjct: 28 RFTDDYQLFEELGKGAFSVVRRCVKKTPTQEY-AAKIINTKKLSAR--DHQKLEREARIC 84
Query: 476 TKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL-----ATNLSNDAAAEEL--------- 521
++H NIV+ + S L+++ + G L A ++A A
Sbjct: 85 RLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILESVN 144
Query: 522 ----------DISSKNVLLDLEHKA---HVSDFGIAKFLKPDSSNWSALVGTYRYVAPD- 567
D+ +N+LL + K ++DFG+A ++ + W GT Y++P+
Sbjct: 145 HIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGYLSPEV 204
Query: 568 -----YRKKCDVYSFRVLALEVIKGKHP 590
Y K D+++ V+ ++ G P
Sbjct: 205 LRKDPYGKPVDIWACGVILYILLVGYPP 232
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 104/244 (42%), Gaps = 33/244 (13%)
Query: 51 SSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGA-----LERVIV 105
S L+ L L +LS VG L L L N F N+C+ A L + +
Sbjct: 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF-----ENLCQISASNFPSLTHLSI 332
Query: 106 GGNHFRGPI-PKCLRNCPNLVRISLEGNNMRGTISEAFGIYL----NLTFLDISDNNFFG 160
GN R + CL N NL + L +++ S+ + L +L L++S N
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIE--TSDCCNLQLRNLSHLQSLNLSYNEPLS 390
Query: 161 EIASNWGKCPKLSTLNVSMNNI-TRSIPLEIGNLSTLNEFDLSLNHIVGKIPKE--FGKL 217
+ +CP+L L+++ + + NL L +LS H + I E F L
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS--HSLLDISSEQLFDGL 448
Query: 218 NSLTKLILRGNQLIGHLP-------SEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHY 270
+L L L+GN H P + + +L +LE L LS SS+ + +L +++
Sbjct: 449 PALQHLNLQGN----HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504
Query: 271 LDLS 274
+DLS
Sbjct: 505 VDLS 508
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 108/277 (38%), Gaps = 49/277 (17%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSS-VGNLSSLRYLFLFE 60
L+ L++L L N L N SL L + GN R L + + NL +LR L L
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
+++ S NL L NL H L+ + + N + +
Sbjct: 360 DDIETS---DCCNLQLR-----------NLSH-------LQSLNLSYNEPLSLKTEAFKE 398
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNL----------TFLDISDNNFFGEIASNWGKCP 170
CP L + L ++ + +A + NL + LDIS F + P
Sbjct: 399 CPQLELLDLAFTRLK--VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL-------P 449
Query: 171 KLSTLNVSMNNITRSIPLEIGNLSTLNEFD---LSLNHIVGKIPKEFGKLNSLTKLILRG 227
L LN+ N+ + + +L TL + LS + F L + + L
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509
Query: 228 NQLIGHLPSEIGSLTKLE--FLNLSTNRFSSLIPESL 262
N+L S I +L+ L+ +LNL++N S ++P L
Sbjct: 510 NRLTS---SSIEALSHLKGIYLNLASNHISIILPSLL 543
>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3OBJ|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Mutants In
Response To Inhibitor Binding
Length = 360
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 80/196 (40%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 30 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 87
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 88 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 147
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + D G+A+ + + + V T Y AP+ Y +
Sbjct: 148 HRDLKPSNLAVNEDCELKILDRGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 204
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 205 DIWSVGCIMAELLTGR 220
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 78/204 (38%), Gaps = 54/204 (26%)
Query: 428 CIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG+G G V++A+L + +A+KK + D++ E++ + ++H N+V
Sbjct: 47 VIGNGSFGVVFQAKLVESDEVAIKKV--------LQDKRFKNRELQIMRIVKHPNVVDLK 98
Query: 488 GF------------------------CSHARHS-----------ILIYEYLKRGSLATNL 512
F +RH I +Y Y SLA
Sbjct: 99 AFFYSNGDKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH 158
Query: 513 SNDAAAEELDISSKNVLLDLEHKA-HVSDFGIAKFLKPDSSNWSALVGTYRYVAPD---- 567
S DI +N+LLD + DFG AK L N S + Y Y AP+
Sbjct: 159 SIGICHR--DIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSXICSRY-YRAPELIFG 215
Query: 568 ---YRKKCDVYSFRVLALEVIKGK 588
Y D++S + E+++G+
Sbjct: 216 ATNYTTNIDIWSTGCVMAELMQGQ 239
>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue
pdb|2PMN|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp-Site
Inhibitor
pdb|2PMO|X Chain X, Crystal Structure Of Pfpk7 In Complex With Hymenialdisine
Length = 348
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/197 (18%), Positives = 77/197 (39%), Gaps = 49/197 (24%)
Query: 418 RAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPL----------PSDQIA---D 464
+ IND+ + G+ + E +K F A+KK+ L +D+I+
Sbjct: 28 KYINDYRIIRTLNQGKFNKIILCEKDNK-FYALKKYEKSLLEKKRDFTKSNNDKISIKSK 86
Query: 465 QKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLA--------------- 509
+F E++ +T I++ + G ++ +IYEY++ S+
Sbjct: 87 YDDFKNELQIITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTC 146
Query: 510 ------------------TNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+ + N+ D+ N+L+D + +SDFG ++++
Sbjct: 147 FIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKK 206
Query: 552 SNWSALVGTYRYVAPDY 568
S GTY ++ P++
Sbjct: 207 IKGSR--GTYEFMPPEF 221
>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
pdb|2VD5|B Chain B, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
Length = 412
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL-VGTYRYVAPDYRK---------- 570
DI N+LLD ++DFG L+ D + S + VGT Y++P+ +
Sbjct: 187 DIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGS 246
Query: 571 ---KCDVYSFRVLALEVIKGKHP 590
+CD ++ V A E+ G+ P
Sbjct: 247 YGPECDWWALGVFAYEMFYGQTP 269
>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3OBG|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Mutants In
Response To Inhibitor Binding
pdb|3OC1|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 80/196 (40%), Gaps = 41/196 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV A + + +AVKK + P S I K + E+ L ++H N++
Sbjct: 30 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 87
Query: 488 GFCSHARHSILIYE-YLKRGSLATNLSNDAAAEEL------------------------- 521
+ AR + YL + +L+N ++L
Sbjct: 88 DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 147
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKC 572
D+ N+ ++ + + + D G+A+ + + + V T Y AP+ Y +
Sbjct: 148 HRDLKPSNLAVNEDCELKILDGGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTV 204
Query: 573 DVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 205 DIWSVGCIMAELLTGR 220
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 15/79 (18%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIA---KFLKPDSSNWSALVGTYRYVAPD-------YRKK 571
D+ N+LLD +SD G+A KP +S VGT+ Y+AP+ Y
Sbjct: 316 DLKPANILLDEHGHVRISDLGLACDFSKKKPHAS-----VGTHGYMAPEVLQKGVAYDSS 370
Query: 572 CDVYSFRVLALEVIKGKHP 590
D +S + ++++G P
Sbjct: 371 ADWFSLGCMLFKLLRGHSP 389
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 15/79 (18%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIA---KFLKPDSSNWSALVGTYRYVAPD-------YRKK 571
D+ N+LLD +SD G+A KP +S VGT+ Y+AP+ Y
Sbjct: 317 DLKPANILLDEHGHVRISDLGLACDFSKKKPHAS-----VGTHGYMAPEVLQKGVAYDSS 371
Query: 572 CDVYSFRVLALEVIKGKHP 590
D +S + ++++G P
Sbjct: 372 ADWFSLGCMLFKLLRGHSP 390
>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
Length = 346
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 26/177 (14%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSD-QIADQKEFFAEIEALTKIRHRNIVKF 486
+G G+ +VY+A + + + +A+KK S+ + + EI+ L ++ H NI+
Sbjct: 18 LGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGL 77
Query: 487 YGFCSHARHSILIYEYL--------KRGSLATNLSNDAAAEEL----------------D 522
H + L+++++ K SL S+ A + D
Sbjct: 78 LDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRD 137
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKCDVYSFRV 579
+ N+LLD ++DFG+AK + + V T Y AP+ +Y V
Sbjct: 138 LKPNNLLLDENGVLKLADFGLAKSFGSPNRAYXHQVVTRWYRAPELLFGARMYGVGV 194
>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha
pdb|3OHT|B Chain B, Crystal Structure Of Salmo Salar P38alpha
Length = 389
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 82/197 (41%), Gaps = 43/197 (21%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+GSG +GSV + ++ S +AVKK + P S I K + E+ L ++H N++
Sbjct: 59 VGSGAYGSVCSSYDVKSGLKIAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLL 116
Query: 488 GFCSHARHSILIYE--YLKRGSLATNLSNDAAAEEL------------------------ 521
+ A S+ + YL + +L+N ++L
Sbjct: 117 DVFTPAT-SLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADI 175
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKK 571
D+ N+ ++ + + + DFG+A+ + + + V T Y AP+ Y
Sbjct: 176 IHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNMT 232
Query: 572 CDVYSFRVLALEVIKGK 588
D++S + E++ G+
Sbjct: 233 VDIWSVGCIMAELLTGR 249
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 15/79 (18%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIA---KFLKPDSSNWSALVGTYRYVAPD-------YRKK 571
D+ N+LLD +SD G+A KP +S VGT+ Y+AP+ Y
Sbjct: 317 DLKPANILLDEHGHVRISDLGLACDFSKKKPHAS-----VGTHGYMAPEVLQKGVAYDSS 371
Query: 572 CDVYSFRVLALEVIKGKHP 590
D +S + ++++G P
Sbjct: 372 ADWFSLGCMLFKLLRGHSP 390
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 15/79 (18%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIA---KFLKPDSSNWSALVGTYRYVAPD-------YRKK 571
D+ N+LLD +SD G+A KP +S VGT+ Y+AP+ Y
Sbjct: 317 DLKPANILLDEHGHVRISDLGLACDFSKKKPHAS-----VGTHGYMAPEVLQKGVAYDSS 371
Query: 572 CDVYSFRVLALEVIKGKHP 590
D +S + ++++G P
Sbjct: 372 ADWFSLGCMLFKLLRGHSP 390
>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
Length = 327
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 32/156 (20%)
Query: 466 KEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE----- 520
++ F E+ + + H NIVK + + L+ EY G + L +E
Sbjct: 58 QKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARA 117
Query: 521 -------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561
D+ ++N+LLD + ++DFG + + A G
Sbjct: 118 KFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTF-GNKLDAFCGAP 176
Query: 562 RYVAPDYRK-------KCDVYSFRVLALEVIKGKHP 590
Y AP+ + + DV+S V+ ++ G P
Sbjct: 177 PYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLP 212
>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
Length = 328
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 32/156 (20%)
Query: 466 KEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE----- 520
++ F E+ + + H NIVK + + LI EY G + L +E
Sbjct: 56 QKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARS 115
Query: 521 -------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561
D+ ++N+LLD + ++DFG + G+
Sbjct: 116 KFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTV-GGKLDTFCGSP 174
Query: 562 RYVAPDYRK-------KCDVYSFRVLALEVIKGKHP 590
Y AP+ + + DV+S V+ ++ G P
Sbjct: 175 PYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLP 210
>pdb|1RJB|A Chain A, Crystal Structure Of Flt3
Length = 344
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 106/286 (37%), Gaps = 74/286 (25%)
Query: 429 IGSGRHGSVYRAELP--SKEFLAVKKFNSPLPSDQIADQKE-FFAEIEALTKI-RHRNIV 484
+GSG G V A SK ++++ L + ++E +E++ +T++ H NIV
Sbjct: 53 LGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIV 112
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNL--------------SNDAAAEE---------- 520
G C+ + LI+EY G L L N EE
Sbjct: 113 NLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFE 172
Query: 521 -----------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL 557
D++++NVL+ + DFG+A+ + DS+ +
Sbjct: 173 DLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSN--YVV 230
Query: 558 VGTYR----YVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV-INM 606
G R ++AP+ Y K DV+S+ +L E+ F + P P + ++
Sbjct: 231 RGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEI--------FSLGVNPYPGIPVDA 282
Query: 607 RLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTIT 652
+++ P + I I + SC RP+ +T
Sbjct: 283 NFYKLIQNGFKMDQPFYATEEIYI--IMQSCWAFDSRKRPSFPNLT 326
>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei,
Pb000659.00.0
pdb|3N9X|B Chain B, Crystal Structure Of Map Kinase From Plasmodium Berghei,
Pb000659.00.0
Length = 432
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 66/168 (39%), Gaps = 39/168 (23%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFF 469
F ++ + +++ K+ IG G +G VY A + +++ +A+KK N + + D K
Sbjct: 16 FQGIKNVHVPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMF--EDLIDCKRIL 73
Query: 470 AEIEALTKIRHRNIVKFYG--------------------------------FCSHARHSI 497
EI L +++ I++ Y F +
Sbjct: 74 REITILNRLKSDYIIRLYDLIIPDDLLKFDELYIVLEIADSDLKKLFKTPIFLTEEHIKT 133
Query: 498 LIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAK 545
++Y L L N +++ D+ N LL+ + V DFG+A+
Sbjct: 134 ILYNLL----LGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLAR 177
>pdb|2H34|A Chain A, Apoenzyme Crystal Structure Of The Tuberculosis
SerineTHREONINE Kinase, Pkne
pdb|2H34|B Chain B, Apoenzyme Crystal Structure Of The Tuberculosis
SerineTHREONINE Kinase, Pkne
Length = 309
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 20/102 (19%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDS-SNWSALVGTYRYVAPD--------YRKKC 572
D+ +N+L+ + A++ DFGIA + + VGT Y AP+ YR
Sbjct: 159 DVKPENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYXAPERFSESHATYR--A 216
Query: 573 DVYSFRVLALEVIKGKHPR---------GFVSSILPSPSVIN 605
D+Y+ + E + G P ++ +P PS +
Sbjct: 217 DIYALTCVLYECLTGSPPYQGDQLSVXGAHINQAIPRPSTVR 258
>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of
The Saccharomyces Cerevisiae Ampk Homolog Snf1
Length = 271
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 30/174 (17%)
Query: 420 INDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPL--PSDQIADQKEFFAEIEALT 476
I ++ +G G G V A + + +A+K N + SD Q EI L
Sbjct: 3 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDM---QGRIEREISYLR 59
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH +I+K Y I++ EY + D +E+
Sbjct: 60 LLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYC 119
Query: 521 -------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD 567
D+ +N+LLD ++DFG++ + D + G+ Y AP+
Sbjct: 120 HRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMT-DGNFLKTSCGSPNYAAPE 172
>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
pdb|1TKI|B Chain B, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
Length = 321
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 75/195 (38%), Gaps = 38/195 (19%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G G G V+R S + + KF +DQ+ +KE I L RHRNI+ +
Sbjct: 13 LGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKE----ISILNIARHRNILHLHE 68
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDA--------------AAEEL-----------DI 523
++I+E++ + ++ A E L DI
Sbjct: 69 SFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDI 128
Query: 524 SSKNVLLDLEHKAHVS--DFGIAKFLKPDSSNWSALVGTYRYVAPDYRK------KCDVY 575
+N++ + + +FG A+ LKP N+ L Y AP+ + D++
Sbjct: 129 RPENIIYQTRRSSTIKIIEFGQARQLKP-GDNFRLLFTAPEYYAPEVHQHDVVSTATDMW 187
Query: 576 SFRVLALEVIKGKHP 590
S L ++ G +P
Sbjct: 188 SLGTLVYVLLSGINP 202
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 74/199 (37%), Gaps = 23/199 (11%)
Query: 127 ISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSI 186
++L+ N+++ ++ F +L L +S N + P L+TL + N +T
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 187 PLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPS---------- 236
LS L E L N I F ++ SL +L L + + ++
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 237 -------------EIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELP 283
+ +L +LE L LS NR + P S L L L L Q
Sbjct: 160 YLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIER 219
Query: 284 KELGKLVQLSELELSHNFL 302
L L EL LSHN L
Sbjct: 220 NAFDDLKSLEELNLSHNNL 238
>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
pdb|2J90|B Chain B, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
Length = 304
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 94/224 (41%), Gaps = 46/224 (20%)
Query: 429 IGSGRHGSVY--RAELPSKEFLA--VKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+GSG+ V R + KE+ A +KK S + ++E E+ L +IRH NI+
Sbjct: 34 LGSGQFAIVRKCRQKGTGKEYAAKFIKK-RRLXSSRRGVSREEIEREVNILREIRHPNII 92
Query: 485 KFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAEEL----------------- 521
+ + +LI E + G L +L+ D A + L
Sbjct: 93 TLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKRIAH 152
Query: 522 -DISSKNVLLDLEH----KAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRK------ 570
D+ +N++L ++ + + DFGIA ++ + + + GT +VAP+
Sbjct: 153 FDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEA-GNEFKNIFGTPEFVAPEIVNYEPLGL 211
Query: 571 KCDVYSFRVLALEVIKGKHPRGFV----SSILPSPSVINMRLDE 610
+ D++S V+ ++ G P F+ L + S +N DE
Sbjct: 212 EADMWSIGVITYILLSGASP--FLGETKQETLTNISAVNYDFDE 253
>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
pdb|3HYH|B Chain B, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
Length = 275
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 30/174 (17%)
Query: 420 INDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPL--PSDQIADQKEFFAEIEALT 476
I ++ +G G G V A + + +A+K N + SD Q EI L
Sbjct: 12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDM---QGRIEREISYLR 68
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH +I+K Y I++ EY + D +E+
Sbjct: 69 LLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYC 128
Query: 521 -------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD 567
D+ +N+LLD ++DFG++ + D + G+ Y AP+
Sbjct: 129 HRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMT-DGNFLKTSCGSPNYAAPE 181
>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
pdb|3DAE|B Chain B, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
Length = 283
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 30/174 (17%)
Query: 420 INDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPL--PSDQIADQKEFFAEIEALT 476
I ++ +G G G V A + + +A+K N + SD Q EI L
Sbjct: 13 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDM---QGRIEREISYLR 69
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH +I+K Y I++ EY + D +E+
Sbjct: 70 LLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYC 129
Query: 521 -------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD 567
D+ +N+LLD ++DFG++ + D + G+ Y AP+
Sbjct: 130 HRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMT-DGNFLKTSCGSPNYAAPE 182
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 33/160 (20%)
Query: 464 DQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDI 523
D ++ E ++H NIV+ + S H LI++ + G L ++ E D
Sbjct: 53 DHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADA 112
Query: 524 SS------------------------KNVLLDLEHKA---HVSDFGIAKFLKPDSSNWSA 556
S +N+LL + K ++DFG+A ++ + W
Sbjct: 113 SHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFG 172
Query: 557 LVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
GT Y++P+ Y K D+++ V+ ++ G P
Sbjct: 173 FAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPP 212
>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3PP0|B Chain B, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3RCD|A Chain A, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|B Chain B, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|C Chain C, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|D Chain D, Her2 Kinase Domain Complexed With Tak-285
Length = 338
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 22/144 (15%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAPD------YRKKCD 573
D++++NVL+ + ++DFG+A+ L D + + A G +++A + + + D
Sbjct: 144 DLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILRRRFTHQSD 203
Query: 574 VYSFRVLALEVIK-GKHP-RGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIM 631
V+S+ V E++ G P G + +P RL P P + I +
Sbjct: 204 VWSYGVTVWELMTFGAKPYDGIPAREIPDLLEKGERL----------PQPPIC--TIDVY 251
Query: 632 EVAFSCLDVSPESRPTMQTITQQL 655
+ C + E RP + + +
Sbjct: 252 MIMVKCWMIDSECRPRFRELVSEF 275
>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast
Snf1
Length = 274
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 30/174 (17%)
Query: 420 INDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPL--PSDQIADQKEFFAEIEALT 476
I ++ +G G G V A + + +A+K N + SD Q EI L
Sbjct: 7 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDM---QGRIEREISYLR 63
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------- 520
+RH +I+K Y I++ EY + D +E+
Sbjct: 64 LLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYC 123
Query: 521 -------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD 567
D+ +N+LLD ++DFG++ + D + G+ Y AP+
Sbjct: 124 HRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMT-DGNFLKTSCGSPNYAAPE 176
>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
pdb|2VZ6|B Chain B, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
Length = 313
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 33/160 (20%)
Query: 464 DQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL-----ATNLSNDAAA 518
D ++ E ++H NIV+ + S H LI++ + G L A ++A A
Sbjct: 64 DHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADA 123
Query: 519 EEL-------------------DISSKNVLLDLEHKA---HVSDFGIAKFLKPDSSNWSA 556
D+ +N+LL + K ++DFG+A ++ + W
Sbjct: 124 SHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFG 183
Query: 557 LVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
GT Y++P+ Y K D+++ V+ ++ G P
Sbjct: 184 FAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPP 223
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 89/225 (39%), Gaps = 54/225 (24%)
Query: 104 IVGGNHFRGPIPKCLRNCPNLVRI---------------SLEGNNMRGT-ISEAFGIYLN 147
IV GN+ +P+ L+N P L I SLE N+R +++ + +
Sbjct: 220 IVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQS 278
Query: 148 LTFLDISDNNFFG----------------EIASNWGKCPKLSTLNVSMNNITRSIPLEIG 191
LTFLD+S+N F G EI S P L LNVS N + +E+
Sbjct: 279 LTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-----IELP 333
Query: 192 NLST-LNEFDLSLNHI--VGKIPKEFGKL----NSLTKLI--------LRGNQLIGHLPS 236
L L S NH+ V ++P+ +L N L + LR N + +P
Sbjct: 334 ALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393
Query: 237 EIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQE 281
+L +L F IPES+ +L + Y+F E
Sbjct: 394 LPQNLKQLHVETNPLREFPD-IPESVEDLRMNSERVVDPYEFAHE 437
>pdb|3P1A|A Chain A, Structure Of Human Membrane-Associated Tyrosine- And
Threonine- Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1)
Length = 311
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 499 IYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV 558
++ YL+ LA + LD+ N+ L + + DFG+ L +
Sbjct: 159 VWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAG-EVQE 217
Query: 559 GTYRYVAPD-----YRKKCDVYSFRVLALEV 584
G RY+AP+ Y DV+S + LEV
Sbjct: 218 GDPRYMAPELLQGSYGTAADVFSLGLTILEV 248
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 74/199 (37%), Gaps = 23/199 (11%)
Query: 127 ISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSI 186
++L+ N+++ ++ F +L L +S N + P L+TL + N +T
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 187 PLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPS---------- 236
LS L E L N I F ++ SL +L L + + ++
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 237 -------------EIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELP 283
+ +L +LE L LS NR + P S L L L L Q
Sbjct: 160 YLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIER 219
Query: 284 KELGKLVQLSELELSHNFL 302
L L EL LSHN L
Sbjct: 220 NAFDDLKSLEELNLSHNNL 238
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 231 IGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLV 290
+ +P+ I + T++ L L NR + L P L +L LDL Q KL
Sbjct: 21 LASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 291 QLSELELSHNFLGREIP 307
QL++L L+ N L + IP
Sbjct: 79 QLTQLSLNDNQL-KSIP 94
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%)
Query: 204 NHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLG 263
N I P F +L LT+L L NQL LT+L L+L+ N+ S+ +
Sbjct: 40 NRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 99
Query: 264 NLLKLHYLDL 273
NL L ++ L
Sbjct: 100 NLRSLTHIWL 109
>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
pdb|2JAM|B Chain B, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
Length = 304
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 56/153 (36%), Gaps = 35/153 (22%)
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDIS--SKNV 528
EI L KI+H NIV H L+ + + G L + E D S + V
Sbjct: 56 EIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKDASLVIQQV 115
Query: 529 LLDLEH-------------------------KAHVSDFGIAKFLKPDSSNWSALVGTYRY 563
L +++ K ++DFG++K + S GT Y
Sbjct: 116 LSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKM--EQNGIMSTACGTPGY 173
Query: 564 VAPD------YRKKCDVYSFRVLALEVIKGKHP 590
VAP+ Y K D +S V+ ++ G P
Sbjct: 174 VAPEVLAQKPYSKAVDCWSIGVITYILLCGYPP 206
>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
Length = 327
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 32/156 (20%)
Query: 466 KEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE----- 520
++ F E+ + + H NIVK + + L+ EY G + L +E
Sbjct: 58 QKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARA 117
Query: 521 -------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561
D+ ++N+LLD + ++DFG + + G+
Sbjct: 118 KFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTF-GNKLDTFCGSP 176
Query: 562 RYVAPDYRK-------KCDVYSFRVLALEVIKGKHP 590
Y AP+ + + DV+S V+ ++ G P
Sbjct: 177 PYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLP 212
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 32/156 (20%)
Query: 466 KEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE----- 520
++ F E+ + + H NIVK + + L+ EY G + L +E
Sbjct: 58 QKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARA 117
Query: 521 -------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561
D+ ++N+LLD + ++DFG + + G+
Sbjct: 118 KFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTF-GNKLDTFCGSP 176
Query: 562 RYVAPDYRK-------KCDVYSFRVLALEVIKGKHP 590
Y AP+ + + DV+S V+ ++ G P
Sbjct: 177 PYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLP 212
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 31/139 (22%)
Query: 199 FDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL-----IGHLPSEIGSLTKLEF------- 246
D S N + + + G L L LIL+ NQL I + +++ SL +L+
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 247 ---------------LNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQ 291
LN+S+N + I L +K+ LDL + I+ +PK++ KL
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKV--LDLHSNK-IKSIPKQVVKLEA 445
Query: 292 LSELELSHNFLGREIPSQI 310
L EL ++ N L + +P I
Sbjct: 446 LQELNVASNQL-KSVPDGI 463
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 17/152 (11%)
Query: 118 LRNCPNLVRIS---LEGNNMR--GTISEAFGIYLNLTFLDISDNNF-FGEIASNWGKCPK 171
NC +L + L+ N ++ I+E +L LDIS N+ + E +
Sbjct: 341 FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400
Query: 172 LSTLNVSMNNIT----RSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRG 227
L +LN+S N +T R +P I L DL N I IPK+ KL +L +L +
Sbjct: 401 LLSLNMSSNILTDTIFRCLPPRIKVL------DLHSNKI-KSIPKQVVKLEALQELNVAS 453
Query: 228 NQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIP 259
NQL LT L+ + L TN + P
Sbjct: 454 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 22/92 (23%)
Query: 223 LILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKL----------HYLD 272
L+ R + H+P ++ T + LN+S N S L + +L KL YLD
Sbjct: 4 LVDRSKNGLIHVPKDLSQKTTI--LNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61
Query: 273 LSKYQFIQELPKELGKLVQLSELELSHNFLGR 304
+S ++F QE L L+LSHN L +
Sbjct: 62 ISVFKFNQE----------LEYLDLSHNKLVK 83
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 32/156 (20%)
Query: 466 KEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE----- 520
++ F E+ + + H NIVK + + L+ EY G + L +E
Sbjct: 58 QKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARA 117
Query: 521 -------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561
D+ ++N+LLD + ++DFG + + G+
Sbjct: 118 KFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTF-GNKLDTFCGSP 176
Query: 562 RYVAPDYRK-------KCDVYSFRVLALEVIKGKHP 590
Y AP+ + + DV+S V+ ++ G P
Sbjct: 177 PYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLP 212
>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
Length = 319
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 32/156 (20%)
Query: 466 KEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE----- 520
++ F E+ + + H NIVK + + L+ EY G + L +E
Sbjct: 51 QKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGWMKEKEARA 110
Query: 521 -------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561
D+ ++N+LLD + ++DFG + + G+
Sbjct: 111 KFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTF-GNKLDTFCGSP 169
Query: 562 RYVAPDYRK-------KCDVYSFRVLALEVIKGKHP 590
Y AP+ + + DV+S V+ ++ G P
Sbjct: 170 PYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLP 205
>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|C Chain C, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|D Chain D, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
Length = 295
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 36/196 (18%)
Query: 429 IGSGRHGSVYR-AELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G V R +L + A K N+ S + D ++ E ++H NIV+ +
Sbjct: 12 IGKGAFSVVRRCVKLCTGHEYAAKIINTKKLSAR--DHQKLEREARICRLLKHSNIVRLH 69
Query: 488 GFCSHARHSILIYEYLKRGSL-----ATNLSNDAAAEEL-------------------DI 523
S L+++ + G L A ++A A D+
Sbjct: 70 DSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRDL 129
Query: 524 SSKNVLLDLEHKA---HVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDV 574
+N+LL + K ++DFG+A ++ D W GT Y++P+ Y K D+
Sbjct: 130 KPENLLLASKCKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGYLSPEVLRKEAYGKPVDI 189
Query: 575 YSFRVLALEVIKGKHP 590
++ V+ ++ G P
Sbjct: 190 WACGVILYILLVGYPP 205
>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
pdb|2BDW|B Chain B, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
Length = 362
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 74/185 (40%), Gaps = 34/185 (18%)
Query: 421 NDFDAKYCIGSGRHGSVYRA--ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+++D K +G G V R + EF A K N+ S + D ++ E K+
Sbjct: 29 DNYDVKEELGKGAFSVVRRCVHKTTGLEF-AAKIINTKKLSAR--DFQKLEREARICRKL 85
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISS------------- 525
+H NIV+ + L+++ + G L ++ E D S
Sbjct: 86 QHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCH 145
Query: 526 -----------KNVLLDLEHKA---HVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKK 571
+N+LL + K ++DFG+A + DS W GT Y++P+ KK
Sbjct: 146 SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN-DSEAWHGFAGTPGYLSPEVLKK 204
Query: 572 CDVYS 576
D YS
Sbjct: 205 -DPYS 208
>pdb|2NYA|A Chain A, Crystal Structure Of The Periplasmic Nitrate Reductase
(Nap) From Escherichia Coli
pdb|2NYA|F Chain F, Crystal Structure Of The Periplasmic Nitrate Reductase
(Nap) From Escherichia Coli
Length = 792
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 318 VFCTITNSVPTNNFLNCQKGYACQKVVLTFQQFSTSAKICPNLSRLPTNHHPQSGCISVI 377
V C P N LNC KGY K++ ++ L R+ + + G
Sbjct: 29 VACQGDPDAPVNRGLNCIKGYFLPKIMY------GKDRLTQPLLRMKNGKYDKEG----- 77
Query: 378 AYVPIIWDQA 387
+ PI WDQA
Sbjct: 78 EFTPITWDQA 87
>pdb|3UDB|A Chain A, Crystal Structure Of Snrk2.6
pdb|3UDB|B Chain B, Crystal Structure Of Snrk2.6
pdb|3UDB|C Chain C, Crystal Structure Of Snrk2.6
pdb|3UDB|D Chain D, Crystal Structure Of Snrk2.6
pdb|3UDB|E Chain E, Crystal Structure Of Snrk2.6
pdb|3UDB|F Chain F, Crystal Structure Of Snrk2.6
Length = 317
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 34/146 (23%)
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAA-------------- 517
+RH NIV+F H ++ EY G L A S D A
Sbjct: 72 LRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYA 131
Query: 518 ----AEELDISSKNVLLD--LEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDY--- 568
D+ +N LLD + ++DFG +K S SA VGT Y+AP+
Sbjct: 132 HAMQVAHRDLKLENTLLDGSPAPRLKIADFGYSKASVLHSQPKSA-VGTPAYIAPEVLLK 190
Query: 569 ----RKKCDVYSFRVLALEVIKGKHP 590
K DV+S V ++ G +P
Sbjct: 191 KEYDGKVADVWSCGVTLYVMLVGAYP 216
>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With A Beta-Carboline Ligand
pdb|3BQR|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With An Imidazo-Pyridazine Ligand
Length = 283
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 94/224 (41%), Gaps = 46/224 (20%)
Query: 429 IGSGRHGSVY--RAELPSKEFLA--VKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+GSG+ V R + KE+ A +KK S + ++E E+ L +IRH NI+
Sbjct: 13 LGSGQFAIVRKCRQKGTGKEYAAKFIKK-RRLSSSRRGVSREEIEREVNILREIRHPNII 71
Query: 485 KFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAEEL----------------- 521
+ + +LI E + G L +L+ D A + L
Sbjct: 72 TLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKRIAH 131
Query: 522 -DISSKNVLLDLEH----KAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRK------ 570
D+ +N++L ++ + + DFGIA ++ + + + GT +VAP+
Sbjct: 132 FDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEA-GNEFKNIFGTPEFVAPEIVNYEPLGL 190
Query: 571 KCDVYSFRVLALEVIKGKHPRGFV----SSILPSPSVINMRLDE 610
+ D++S V+ ++ G P F+ L + S +N DE
Sbjct: 191 EADMWSIGVITYILLSGASP--FLGETKQETLTNISAVNYDFDE 232
>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
Length = 327
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 32/156 (20%)
Query: 466 KEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE----- 520
++ F E+ + + H NIVK + + L+ EY G + L +E
Sbjct: 58 QKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARA 117
Query: 521 -------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561
D+ ++N+LLD + ++DFG + + G+
Sbjct: 118 KFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTF-GNKLDEFCGSP 176
Query: 562 RYVAPDYRK-------KCDVYSFRVLALEVIKGKHP 590
Y AP+ + + DV+S V+ ++ G P
Sbjct: 177 PYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLP 212
>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147
pdb|3NIE|B Chain B, Crystal Structure Of Pf11_0147
Length = 429
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/181 (18%), Positives = 71/181 (39%), Gaps = 41/181 (22%)
Query: 405 LSFKGKFDYVEIIRAINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIA 463
L F+G ++ ++ ++++ K+ IG G +G VY A + + + +A+KK N + +
Sbjct: 14 LYFQGAI--IKNVKVPDNYEIKHLIGRGSYGYVYLAYDKNANKNVAIKKVNRMF--EDLI 69
Query: 464 DQKEFFAEIEALTKIRHRNIVKFYG--------------------------------FCS 491
D K EI L +++ I++ + F +
Sbjct: 70 DCKRILREITILNRLKSDYIIRLHDLIIPEDLLKFDELYIVLEIADSDLKKLFKTPIFLT 129
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
++Y L L +++ D+ N LL+ + + DFG+A+ + D
Sbjct: 130 EQHVKTILYNLL----LGEKFIHESGIIHRDLKPANCLLNQDCSVKICDFGLARTINSDK 185
Query: 552 S 552
Sbjct: 186 D 186
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%)
Query: 204 NHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLG 263
N I P F +L LT+L L NQL LT+L L+L+ N+ S+ +
Sbjct: 48 NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 107
Query: 264 NLLKLHYLDL 273
NL L ++ L
Sbjct: 108 NLKSLTHIWL 117
>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
pdb|1YRP|B Chain B, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
Length = 278
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 94/224 (41%), Gaps = 46/224 (20%)
Query: 429 IGSGRHGSVY--RAELPSKEFLA--VKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+GSG+ V R + KE+ A +KK S + ++E E+ L +IRH NI+
Sbjct: 20 LGSGQFAIVRKCRQKGTGKEYAAKFIKK-RRLSSSRRGVSREEIEREVNILREIRHPNII 78
Query: 485 KFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAEEL----------------- 521
+ + +LI E + G L +L+ D A + L
Sbjct: 79 TLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKRIAH 138
Query: 522 -DISSKNVLLDLEH----KAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRK------ 570
D+ +N++L ++ + + DFGIA ++ + + + GT +VAP+
Sbjct: 139 FDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEA-GNEFKNIFGTPEFVAPEIVNYEPLGL 197
Query: 571 KCDVYSFRVLALEVIKGKHPRGFV----SSILPSPSVINMRLDE 610
+ D++S V+ ++ G P F+ L + S +N DE
Sbjct: 198 EADMWSIGVITYILLSGASP--FLGETKQETLTNISAVNYDFDE 239
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 24/182 (13%)
Query: 147 NLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHI 206
N+ LD+S N A++ KL LN+S N + ++ LE +LSTL DL+ N++
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLE--SLSTLRTLDLNNNYV 92
Query: 207 ----VG-KIPKEFGKLNSLTK-----------LILRGNQLIGHLPSEIGSLTKLEFLNLS 250
VG I N++++ + L N++ + G +++++L+L
Sbjct: 93 QELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152
Query: 251 TNRFSSL-IPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHN---FLGREI 306
N ++ E + L +L+L +Y FI ++ ++ +L L+LS N F+G E
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNL-QYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEF 210
Query: 307 PS 308
S
Sbjct: 211 QS 212
>pdb|3O5A|A Chain A, Crystal Structure Of Partially Reduced Periplasmic Nitrate
Reductase From Cupriavidus Necator Using Ionic Liquids
Length = 802
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 20/99 (20%)
Query: 305 EIPSQICSMECCEVFCTITNSV---------PTNNFLNCQKGYACQKVVLTFQQFSTSAK 355
+ P + C C N V N LNC KGY K++ + +
Sbjct: 16 KAPCRFCGTGCGVTVAVKDNKVVATQGDPQAEVNKGLNCVKGYFLSKIMYGQDRLTRP-- 73
Query: 356 ICPNLSRLPTNHHPQSGCISVIAYVPIIWDQANREGQRS 394
L R+ + ++G + P+ WDQA E +R
Sbjct: 74 ----LMRMKNGKYDKNG-----DFAPVTWDQAFDEMERQ 103
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%)
Query: 204 NHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLG 263
N I P F +L LT+L L NQL LT+L L+L+ N+ S+ +
Sbjct: 40 NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 99
Query: 264 NLLKLHYL 271
NL L ++
Sbjct: 100 NLKSLTHI 107
>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
pdb|1Y8G|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
Length = 327
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 32/156 (20%)
Query: 466 KEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE----- 520
++ F E+ + H NIVK + + L+ EY G + L +E
Sbjct: 58 QKLFREVRIXKVLNHPNIVKLFEVIETEKTLYLVXEYASGGEVFDYLVAHGRXKEKEARA 117
Query: 521 -------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561
D+ ++N+LLD + ++DFG + + A G
Sbjct: 118 KFRQIVSAVQYCHQKFIVHRDLKAENLLLDADXNIKIADFGFSNEFTF-GNKLDAFCGAP 176
Query: 562 RYVAPDYRK-------KCDVYSFRVLALEVIKGKHP 590
Y AP+ + + DV+S V+ ++ G P
Sbjct: 177 PYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLP 212
>pdb|2ZMD|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain T686a
Mutant In Complex With Sp600125 Inhibitor
Length = 390
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 97/263 (36%), Gaps = 60/263 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN--IVKF 486
IGSG V++ K+ A+K N +Q D + EI L K++ + I++
Sbjct: 64 IGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLD--SYRNEIAYLNKLQQHSDKIIRL 121
Query: 487 YGFCSHARHSILIYE-----------------------YLKRGSLATNLSNDAAAEELDI 523
Y + ++ ++ E Y K A + + D+
Sbjct: 122 YDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDL 181
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPDYRKKC--------- 572
N L+ ++ + DFGIA ++PD+++ + VG Y+ P+ K
Sbjct: 182 KPANFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKS 240
Query: 573 --------DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM--RLDEMLDPRLPPPSPD 622
DV+S + + GK P +IN +L ++DP PD
Sbjct: 241 KSKISPKSDVWSLGCILYYMTYGK---------TPFQQIINQISKLHAIIDPNHEIEFPD 291
Query: 623 VQGKLISIMEVAFSCLDVSPESR 645
+ K + +V CL P+ R
Sbjct: 292 IPEK--DLQDVLKCCLKRDPKQR 312
>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|C Chain C, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|D Chain D, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|E Chain E, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|F Chain F, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|G Chain G, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|H Chain H, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
Length = 328
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 32/156 (20%)
Query: 466 KEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE----- 520
++ F E+ + + H NIVK + + L+ EY G + L +E
Sbjct: 59 QKLFREVRIMKILNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARA 118
Query: 521 -------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561
D+ ++N+LLD + ++DFG + + G+
Sbjct: 119 KFRQIVSAVQYCHQKYIVHRDLKAENLLLDGDMNIKIADFGFSNEFTV-GNKLDTFCGSP 177
Query: 562 RYVAPDYRK-------KCDVYSFRVLALEVIKGKHP 590
Y AP+ + + DV+S V+ ++ G P
Sbjct: 178 PYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLP 213
>pdb|3ML1|A Chain A, Crystal Structure Of The Periplasmic Nitrate Reductase
From Cupriavidus Necator
Length = 802
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 20/99 (20%)
Query: 305 EIPSQICSMECCEVFCTITNSV---------PTNNFLNCQKGYACQKVVLTFQQFSTSAK 355
+ P + C C N V N LNC KGY K++ + +
Sbjct: 16 KAPCRFCGTGCGVTVAVKDNKVVATQGDPQAEVNKGLNCVKGYFLSKIMYGQDRLTRP-- 73
Query: 356 ICPNLSRLPTNHHPQSGCISVIAYVPIIWDQANREGQRS 394
L R+ + ++G + P+ WDQA E +R
Sbjct: 74 ----LMRMKNGKYDKNG-----DFAPVTWDQAFDEMERQ 103
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 190 IGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNL 249
I +L L E DL + P FG L +LIL+ + LP +I LT+LE L+L
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Query: 250 ----STNRFSSLIPESLGNLLKL 268
+ +R SLI + N + L
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIIL 307
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
Query: 123 NLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNI 182
NL + LE +R ++ + NL L I N+ + PKL L++
Sbjct: 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIR-NSPLSALGPAIHHLPKLEELDLRGCTA 241
Query: 183 TRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSL 241
R+ P G + L L + +P + +L L KL LRG + LPS I L
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 214 FGKLNSLTKLILRGNQLIGHLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLD 272
F KL LTKL L NQ I LP + LTKL L L N+ SL L +L L
Sbjct: 48 FDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106
Query: 273 LSKYQF 278
L Q
Sbjct: 107 LDTNQL 112
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 7 ELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFENNLSG 65
L L N L L L L KL L NQ + SLP V L+ L L+L EN L
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ- 89
Query: 66 SIPPSVGNLM--LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPK 116
S+P V + + L LAL+ N R +L+++ + N + P+
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
pdb|2WNT|B Chain B, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
Length = 330
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 538 VSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPR 591
+ DFG AK L+ ++ T +VAP+ Y + CD++S +L ++ G P
Sbjct: 166 ICDFGFAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYTP- 224
Query: 592 GFVSSILPSPSVINMRL 608
F + +P I R+
Sbjct: 225 -FANGPSDTPEEILTRI 240
>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor
Kinase
Length = 299
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/205 (18%), Positives = 76/205 (37%), Gaps = 53/205 (25%)
Query: 429 IGSGRHGSVYRA-------ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
+G G G VY + P +A+K N + + ++ EF E + +
Sbjct: 18 LGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNE---AASMRERIEFLNEASVMKEFNCH 73
Query: 482 NIVKFYGFCSHARHSILIYEYLKRGSLATNLSN--------------------DAAAE-- 519
++V+ G S + +++I E + RG L + L + A E
Sbjct: 74 HVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIA 133
Query: 520 ------------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG--TYRYVA 565
D++++N ++ + + DFG+ + + G R+++
Sbjct: 134 DGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIXETDXXRKGGKGLLPVRWMS 193
Query: 566 PDYRKK------CDVYSFRVLALEV 584
P+ K DV+SF V+ E+
Sbjct: 194 PESLKDGVFTTYSDVWSFGVVLWEI 218
>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp
pdb|2CN8|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Debromohymenialdisine
pdb|2WTC|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2WTD|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2WTI|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2WTJ|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2XBJ|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2XM8|A Chain A, Co-Crystal Structure Of A Small Molecule Inhibitor Bound
To The Kinase Domain Of Chk2
pdb|2XM9|A Chain A, Structure Of A Small Molecule Inhibitor With The Kinase
Domain Of Chk2
pdb|4A9R|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
pdb|4A9S|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
pdb|4A9T|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
pdb|4A9U|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
Length = 329
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 38/156 (24%)
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL--------- 521
EIE L K+ H I+K F A ++ E ++ G L + + +E
Sbjct: 71 EIEILKKLNHPCIIKIKNFFD-AEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQM 129
Query: 522 ---------------DISSKNVLLDLEHK---AHVSDFGIAKFLKPDSSNWSALVGTYRY 563
D+ +NVLL + + ++DFG +K L ++S L GT Y
Sbjct: 130 LLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILG-ETSLMRTLCGTPTY 188
Query: 564 VAPD---------YRKKCDVYSFRVLALEVIKGKHP 590
+AP+ Y + D +S V+ + G P
Sbjct: 189 LAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPP 224
>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
pdb|3RNY|B Chain B, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
Length = 346
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 538 VSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPR 591
+ DFG AK L+ ++ T +VAP+ Y + CD++S +L ++ G P
Sbjct: 166 ICDFGFAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYTP- 224
Query: 592 GFVSSILPSPSVINMRL 608
F + +P I R+
Sbjct: 225 -FANGPSDTPEEILTRI 240
>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1531
Length = 322
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 38/156 (24%)
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL--------- 521
EIE L K+ H I+K F A ++ E ++ G L + + +E
Sbjct: 65 EIEILKKLNHPCIIKIKNFFD-AEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQM 123
Query: 522 ---------------DISSKNVLLDLEHK---AHVSDFGIAKFLKPDSSNWSALVGTYRY 563
D+ +NVLL + + ++DFG +K L ++S L GT Y
Sbjct: 124 LLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILG-ETSLMRTLCGTPTY 182
Query: 564 VAPD---------YRKKCDVYSFRVLALEVIKGKHP 590
+AP+ Y + D +S V+ + G P
Sbjct: 183 LAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPP 218
>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A
Specific Inhibitor
pdb|2W7X|A Chain A, Cellular Inhibition Of Checkpoint Kinase 2 And
Potentiation Of Cytotoxic Drugs By Novel Chk2 Inhibitor
Pv1019
pdb|2YIQ|A Chain A, Structural Analysis Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1322
pdb|2YIR|A Chain A, Structural Analysis Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1352
pdb|2YIT|A Chain A, Structural Analysis Of Checkpoint Kinase 2 In Complex With
Pv1162, A Novel Inhibitor
pdb|2YCQ|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1115
pdb|2YCS|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Pv788
Length = 323
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 38/156 (24%)
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL--------- 521
EIE L K+ H I+K F A ++ E ++ G L + + +E
Sbjct: 65 EIEILKKLNHPCIIKIKNFFD-AEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQM 123
Query: 522 ---------------DISSKNVLLDLEHK---AHVSDFGIAKFLKPDSSNWSALVGTYRY 563
D+ +NVLL + + ++DFG +K L ++S L GT Y
Sbjct: 124 LLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILG-ETSLMRTLCGTPTY 182
Query: 564 VAPD---------YRKKCDVYSFRVLALEVIKGKHP 590
+AP+ Y + D +S V+ + G P
Sbjct: 183 LAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPP 218
>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In
Complex With Inhibitor Pv1533
Length = 322
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 38/156 (24%)
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL--------- 521
EIE L K+ H I+K F A ++ E ++ G L + + +E
Sbjct: 64 EIEILKKLNHPCIIKIKNFFD-AEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQM 122
Query: 522 ---------------DISSKNVLLDLEHK---AHVSDFGIAKFLKPDSSNWSALVGTYRY 563
D+ +NVLL + + ++DFG +K L ++S L GT Y
Sbjct: 123 LLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILG-ETSLMRTLCGTPTY 181
Query: 564 VAPD---------YRKKCDVYSFRVLALEVIKGKHP 590
+AP+ Y + D +S V+ + G P
Sbjct: 182 LAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPP 217
>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|3F5P|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|E Chain E, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|F Chain F, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|G Chain G, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|H Chain H, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|I Chain I, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|J Chain J, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|K Chain K, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|M Chain M, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|L Chain L, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|R Chain R, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|S Chain S, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|T Chain T, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
Length = 308
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/205 (18%), Positives = 76/205 (37%), Gaps = 53/205 (25%)
Query: 429 IGSGRHGSVYRA-------ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
+G G G VY + P +A+K N + + ++ EF E + +
Sbjct: 27 LGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNE---AASMRERIEFLNEASVMKEFNCH 82
Query: 482 NIVKFYGFCSHARHSILIYEYLKRGSLATNLSN--------------------DAAAE-- 519
++V+ G S + +++I E + RG L + L + A E
Sbjct: 83 HVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIA 142
Query: 520 ------------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG--TYRYVA 565
D++++N ++ + + DFG+ + + G R+++
Sbjct: 143 DGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIXETDXXRKGGKGLLPVRWMS 202
Query: 566 PDYRKK------CDVYSFRVLALEV 584
P+ K DV+SF V+ E+
Sbjct: 203 PESLKDGVFTTYSDVWSFGVVLWEI 227
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 28/184 (15%)
Query: 147 NLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHI 206
N+ LD+S N A++ KL LN+S N + ++ LE +LSTL DL+ N++
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLE--SLSTLRTLDLNNNYV 92
Query: 207 ----VG-KIPKEFGKLNSLTK-----------LILRGNQLIGHLPSEIGSLTKLEFLNLS 250
VG I N++++ + L N++ + G +++++L+L
Sbjct: 93 QELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152
Query: 251 TNRFSSL-IPESLGNLLKLHYLDLSKYQFIQELPKELGKLV--QLSELELSHN---FLGR 304
N ++ E + L +L+L +Y FI ++ G++V +L L+LS N F+G
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNL-QYNFIYDVK---GQVVFAKLKTLDLSSNKLAFMGP 208
Query: 305 EIPS 308
E S
Sbjct: 209 EFQS 212
>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex
pdb|3KL8|C Chain C, Camkiintide Inhibitor Complex
pdb|3KL8|E Chain E, Camkiintide Inhibitor Complex
pdb|3KL8|G Chain G, Camkiintide Inhibitor Complex
pdb|3KL8|I Chain I, Camkiintide Inhibitor Complex
Length = 269
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 81/205 (39%), Gaps = 39/205 (19%)
Query: 421 NDFDAKYCIGSGRHGSVYRA--ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+++D K +G G V R + EF A K N+ S + D ++ E K+
Sbjct: 6 DNYDVKEELGKGAFSVVRRCVHKTTGLEF-AAKIINTKKLSAR--DFQKLEREARICRKL 62
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISS------------- 525
+H NIV+ + L+++ + G L ++ E D S
Sbjct: 63 QHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCH 122
Query: 526 -----------KNVLLDLEHKA---HVSDFGIAKFLKPDSSNWSALVGTYRYVAPD---- 567
+N+LL + K ++DFG+A + DS W GT Y++P+
Sbjct: 123 SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN-DSEAWHGFAGTPGYLSPEVLKK 181
Query: 568 --YRKKCDVYSFRVLALEVIKGKHP 590
Y K D+++ V+ ++ G P
Sbjct: 182 DPYSKPVDIWACGVILYILLVGYPP 206
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 5 LRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFENNL 63
++ L L +N + IP + +L++L +L + NQ + S+P V L+SL+Y++L +N
Sbjct: 452 VKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509
Query: 64 SGSIP 68
+ P
Sbjct: 510 DCTCP 514
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 24/151 (15%)
Query: 147 NLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITR--SIPLEIGNLSTLNEFDLSLN 204
+ TFL+ + N F + +L TL + N + + L N+S+L D+SLN
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 205 HIVG-KIPKEFGKLNSLTKLILRGNQLIGH---------------------LPSEIGSLT 242
+ + S+ L L N L G +P ++ L
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQ 473
Query: 243 KLEFLNLSTNRFSSLIPESLGNLLKLHYLDL 273
L+ LN+++N+ S+ L L Y+ L
Sbjct: 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWL 504
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 77/196 (39%), Gaps = 34/196 (17%)
Query: 68 PPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRI 127
PPS + T L N FT ++ L+ +I+ N + N ++
Sbjct: 349 PPSPSSF--TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-----------NFFKV 395
Query: 128 SLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNIT---- 183
+L NM E + LN S N+ + W + + LN+S N +T
Sbjct: 396 ALMTKNMSSL--ETLDVSLN------SLNSHAYDRTCAWAE--SILVLNLSSNMLTGSVF 445
Query: 184 RSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTK 243
R +P ++ L DL N I+ IPK+ L +L +L + NQL LT
Sbjct: 446 RCLPPKVKVL------DLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTS 498
Query: 244 LEFLNLSTNRFSSLIP 259
L+++ L N + P
Sbjct: 499 LQYIWLHDNPWDCTCP 514
>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv976
Length = 323
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 38/156 (24%)
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL--------- 521
EIE L K+ H I+K F A ++ E ++ G L + + +E
Sbjct: 65 EIEILKKLNHPCIIKIKNFFD-AEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQM 123
Query: 522 ---------------DISSKNVLLDLEHK---AHVSDFGIAKFLKPDSSNWSALVGTYRY 563
D+ +NVLL + + ++DFG +K L ++S L GT Y
Sbjct: 124 LLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILG-ETSLMRTLCGTPTY 182
Query: 564 VAPD---------YRKKCDVYSFRVLALEVIKGKHP 590
+AP+ Y + D +S V+ + G P
Sbjct: 183 LAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPP 218
>pdb|3I6U|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6U|B Chain B, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
Length = 419
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 38/157 (24%)
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-------- 521
EIE L K+ H I+K F A ++ E ++ G L + + +E
Sbjct: 189 TEIEILKKLNHPCIIKIKNFFD-AEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQ 247
Query: 522 ----------------DISSKNVLLDLEHKA---HVSDFGIAKFLKPDSSNWSALVGTYR 562
D+ +NVLL + + ++DFG +K L ++S L GT
Sbjct: 248 MLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILG-ETSLMRTLCGTPT 306
Query: 563 YVAPD---------YRKKCDVYSFRVLALEVIKGKHP 590
Y+AP+ Y + D +S V+ + G P
Sbjct: 307 YLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPP 343
>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2 (rsk2)
pdb|4D9U|A Chain A, Rsk2 C-Terminal Kinase Domain, (E)-Tert-Butyl
3-(4-Amino-7-(3-
Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
pdb|4D9T|A Chain A, Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl
3-(4-Amino-7-
(3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
Length = 342
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 538 VSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
+ DFG AK L+ ++ T +VAP+ Y CD++S VL ++ G P
Sbjct: 161 ICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTP 219
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Query: 167 GKCP-KLSTLNVSMNNITRSIP-LEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLI 224
CP + S ++N RS+ + G +T L +N I P F L LT L
Sbjct: 11 AACPSQCSCSGTTVNCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLN 70
Query: 225 LRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDL 273
L NQL LTKL L L N+ S+ NL L ++ L
Sbjct: 71 LAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYL 119
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWN-LKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFL 58
+LT L L+L N LT L P ++ L L L L NQ + S+P V NL SL +++L
Sbjct: 62 SLTQLTYLNLAVNQLTAL-PVGVFDKLTKLTHLALHINQLK-SIPMGVFDNLKSLTHIYL 119
Query: 59 FEN 61
F N
Sbjct: 120 FNN 122
>pdb|3I6W|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|B Chain B, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|C Chain C, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|D Chain D, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|E Chain E, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|F Chain F, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|G Chain G, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|H Chain H, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
Length = 443
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 38/157 (24%)
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-------- 521
EIE L K+ H I+K F + I++ E ++ G L + + +E
Sbjct: 203 TEIEILKKLNHPCIIKIKNFFDAEDYYIVL-ELMEGGELFDKVVGNKRLKEATCKLYFYQ 261
Query: 522 ----------------DISSKNVLLDLEHK---AHVSDFGIAKFLKPDSSNWSALVGTYR 562
D+ +NVLL + + ++DFG +K L ++S L GT
Sbjct: 262 MLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILG-ETSLMRTLCGTPT 320
Query: 563 YVAPD---------YRKKCDVYSFRVLALEVIKGKHP 590
Y+AP+ Y + D +S V+ + G P
Sbjct: 321 YLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPP 357
>pdb|3KK8|A Chain A, Camkii Substrate Complex A
Length = 284
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 81/205 (39%), Gaps = 39/205 (19%)
Query: 421 NDFDAKYCIGSGRHGSVYRA--ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+++D K +G G V R + EF A K N+ S + D ++ E K+
Sbjct: 6 DNYDVKEELGKGAFSVVRRCVHKTTGLEF-AAKIINTKKLSAR--DFQKLEREARICRKL 62
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISS------------- 525
+H NIV+ + L+++ + G L ++ E D S
Sbjct: 63 QHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCH 122
Query: 526 -----------KNVLLDLEHKA---HVSDFGIAKFLKPDSSNWSALVGTYRYVAPD---- 567
+N+LL + K ++DFG+A + DS W GT Y++P+
Sbjct: 123 SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN-DSEAWHGFAGTPGYLSPEVLKK 181
Query: 568 --YRKKCDVYSFRVLALEVIKGKHP 590
Y K D+++ V+ ++ G P
Sbjct: 182 DPYSKPVDIWACGVILYILLVGYPP 206
>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2: Se-Met Derivative
Length = 342
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 538 VSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPR 591
+ DFG AK L+ ++ T +VAP+ Y CD++S VL + G P
Sbjct: 161 ICDFGFAKQLRAENGLLXTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTXLTGYTP- 219
Query: 592 GFVSSILPSPSVINMRL 608
F + +P I R+
Sbjct: 220 -FANGPDDTPEEILARI 235
>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6
pdb|3UC4|B Chain B, The Crystal Structure Of Snf1-Related Kinase 2.6
Length = 362
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 77/196 (39%), Gaps = 40/196 (20%)
Query: 429 IGSGRHG-SVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IGSG G + + S E +AVK ++IA + EI +RH NIV+F
Sbjct: 27 IGSGNFGVARLMRDKQSNELVAVKYIER---GEKIAANVK--REIINHRSLRHPNIVRFK 81
Query: 488 GFCSHARHSILIYEYLKRGSL------ATNLSNDAAA---EEL---------------DI 523
H ++ EY G L A S D A ++L D+
Sbjct: 82 EVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDL 141
Query: 524 SSKNVLLD--LEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDY-------RKKCDV 574
+N LLD + + DFG +K S S VGT Y+AP+ K DV
Sbjct: 142 KLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKST-VGTPAYIAPEVLLKKEYDGKVADV 200
Query: 575 YSFRVLALEVIKGKHP 590
+S V ++ G +P
Sbjct: 201 WSCGVTLYVMLVGAYP 216
>pdb|3KK9|A Chain A, Camkii Substrate Complex B
Length = 282
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 81/205 (39%), Gaps = 39/205 (19%)
Query: 421 NDFDAKYCIGSGRHGSVYRA--ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+++D K +G G V R + EF A K N+ S + D ++ E K+
Sbjct: 5 DNYDVKEELGKGAFSVVRRCVHKTTGLEF-AAKIINTKKLSAR--DFQKLEREARICRKL 61
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISS------------- 525
+H NIV+ + L+++ + G L ++ E D S
Sbjct: 62 QHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCH 121
Query: 526 -----------KNVLLDLEHKA---HVSDFGIAKFLKPDSSNWSALVGTYRYVAPD---- 567
+N+LL + K ++DFG+A + DS W GT Y++P+
Sbjct: 122 SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN-DSEAWHGFAGTPGYLSPEVLKK 180
Query: 568 --YRKKCDVYSFRVLALEVIKGKHP 590
Y K D+++ V+ ++ G P
Sbjct: 181 DPYSKPVDIWACGVILYILLVGYPP 205
>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 361
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 75/196 (38%), Gaps = 40/196 (20%)
Query: 429 IGSGRHG-SVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IGSG G + + S E +AVK D+ + EI +RH NIV+F
Sbjct: 26 IGSGNFGVARLMRDKQSNELVAVKYIERGEKIDENVKR-----EIINHRSLRHPNIVRFK 80
Query: 488 GFCSHARHSILIYEYLKRGSL------ATNLSNDAAA---EEL---------------DI 523
H ++ EY G L A S D A ++L D+
Sbjct: 81 EVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDL 140
Query: 524 SSKNVLLD--LEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDY-------RKKCDV 574
+N LLD + + DFG +K S S VGT Y+AP+ K DV
Sbjct: 141 KLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKST-VGTPAYIAPEVLLKKEYDGKVADV 199
Query: 575 YSFRVLALEVIKGKHP 590
+S V ++ G +P
Sbjct: 200 WSCGVTLYVMLVGAYP 215
>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With Bms-754807
[1-(4-((5-Cyclopropyl-
1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2,
4]triazin-2-Yl)-N-
(6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide]
Length = 315
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 429 IGSGRHGSVYRA-------ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
+G G G VY + P +A+K N + + ++ EF E + +
Sbjct: 26 LGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNE---AASMRERIEFLNEASVMKEFNCH 81
Query: 482 NIVKFYGFCSHARHSILIYEYLKRGSLATNL 512
++V+ G S + +++I E + RG L + L
Sbjct: 82 HVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 112
>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
pdb|1M7N|B Chain B, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
Length = 322
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 429 IGSGRHGSVYRA-------ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
+G G G VY + P +A+K N + + ++ EF E + +
Sbjct: 33 LGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNE---AASMRERIEFLNEASVMKEFNCH 88
Query: 482 NIVKFYGFCSHARHSILIYEYLKRGSLATNL 512
++V+ G S + +++I E + RG L + L
Sbjct: 89 HVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 119
>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution.
pdb|1P4O|B Chain B, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution
Length = 322
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 429 IGSGRHGSVYRA-------ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
+G G G VY + P +A+K N + + ++ EF E + +
Sbjct: 33 LGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNE---AASMRERIEFLNEASVMKEFNCH 88
Query: 482 NIVKFYGFCSHARHSILIYEYLKRGSLATNL 512
++V+ G S + +++I E + RG L + L
Sbjct: 89 HVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 119
>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1
Receptor Kinase In Complex With Pqip
Length = 301
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 429 IGSGRHGSVYRA-------ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
+G G G VY + P +A+K N + + ++ EF E + +
Sbjct: 20 LGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNE---AASMRERIEFLNEASVMKEFNCH 75
Query: 482 NIVKFYGFCSHARHSILIYEYLKRGSLATNL 512
++V+ G S + +++I E + RG L + L
Sbjct: 76 HVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 106
>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain
pdb|2HW6|B Chain B, Crystal Structure Of Mnk1 Catalytic Domain
Length = 307
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 46/168 (27%)
Query: 469 FAEIEALTKIR-HRNIVKFYGFCSHARHSILIYEYLKRGSL--------------ATNLS 513
F E+E L + + ++NI++ F L++E L+ GS+ A+ +
Sbjct: 58 FREVETLYQCQGNKNILELIEFFEDDTRFYLVFEKLQGGSILAHIQKQKHFNEREASRVV 117
Query: 514 NDAAA----------EELDISSKNVLLDLEHK---AHVSDFGIAKFLKPDSS-------N 553
D AA D+ +N+L + K + DF + +K ++S
Sbjct: 118 RDVAAALDFLHTKGIAHRDLKPENILCESPEKVSPVKICDFDLGSGMKLNNSCTPITTPE 177
Query: 554 WSALVGTYRYVAPD-----------YRKKCDVYSFRVLALEVIKGKHP 590
+ G+ Y+AP+ Y K+CD++S V+ ++ G P
Sbjct: 178 LTTPCGSAEYMAPEVVEVFTDQATFYDKRCDLWSLGVVLYIMLSGYPP 225
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 227 GNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL 286
GN I + + + LTKL+ L+L N+ S ++P L L KL L LSK I +L + L
Sbjct: 139 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK-NHISDL-RAL 193
Query: 287 GKLVQLSELEL 297
L L LEL
Sbjct: 194 AGLKNLDVLEL 204
>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|B Chain B, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|C Chain C, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|D Chain D, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
Length = 301
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 429 IGSGRHGSVYRA-------ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
+G G G VY + P +A+K N + + ++ EF E + +
Sbjct: 20 LGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNE---AASMRERIEFLNEASVMKEFNCH 75
Query: 482 NIVKFYGFCSHARHSILIYEYLKRGSLATNL 512
++V+ G S + +++I E + RG L + L
Sbjct: 76 HVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 106
>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A
Benzimidazole Inhibitor
pdb|3NW5|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11b)
pdb|3NW6|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11a)
pdb|3NW7|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (34)
Length = 307
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 429 IGSGRHGSVYRA-------ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
+G G G VY + P +A+K N + + ++ EF E + +
Sbjct: 26 LGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNE---AASMRERIEFLNEASVMKEFNCH 81
Query: 482 NIVKFYGFCSHARHSILIYEYLKRGSLATNL 512
++V+ G S + +++I E + RG L + L
Sbjct: 82 HVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 112
>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex
With An Hydantoin Inhibitor
Length = 305
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 429 IGSGRHGSVYRA-------ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
+G G G VY + P +A+K N + + ++ EF E + +
Sbjct: 24 LGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNE---AASMRERIEFLNEASVMKEFNCH 79
Query: 482 NIVKFYGFCSHARHSILIYEYLKRGSLATNL 512
++V+ G S + +++I E + RG L + L
Sbjct: 80 HVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 110
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
+ T+L +L L N + + W L L +L L NQ + S+P + L+SL+ ++L
Sbjct: 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK-SVPDGIFDRLTSLQKIWLH 355
Query: 60 ENNLSGSIP 68
N S P
Sbjct: 356 TNPWDCSCP 364
>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|B Chain B, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|C Chain C, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|D Chain D, Igf-1rk In Complex With Ligand Msc1609119a-1
Length = 304
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 429 IGSGRHGSVYRA-------ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
+G G G VY + P +A+K N + + ++ EF E + +
Sbjct: 23 LGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNE---AASMRERIEFLNEASVMKEFNCH 78
Query: 482 NIVKFYGFCSHARHSILIYEYLKRGSLATNL 512
++V+ G S + +++I E + RG L + L
Sbjct: 79 HVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 109
>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain
pdb|1JQH|B Chain B, Igf-1 Receptor Kinase Domain
pdb|1JQH|C Chain C, Igf-1 Receptor Kinase Domain
Length = 308
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 429 IGSGRHGSVYRA-------ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
+G G G VY + P +A+K N + + ++ EF E + +
Sbjct: 27 LGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNE---AASMRERIEFLNEASVMKEFNCH 82
Query: 482 NIVKFYGFCSHARHSILIYEYLKRGSLATNL 512
++V+ G S + +++I E + RG L + L
Sbjct: 83 HVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 113
>pdb|3V4B|A Chain A, Crystal Structure Of An Enolase From The Soil Bacterium
Cellvibrio Japonicus (Target Efi-502161) With Bound Mg
And L-Tartrate
pdb|3V3W|A Chain A, Crystal Structure Of An Enolase From The Soil Bacterium
Cellvibrio Japonicus (Target Efi-502161) With Bound Mg
And Glycerol
Length = 424
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 440 AELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
A+LPS E + +K+ + +P A +KEF +I L + HR
Sbjct: 195 ADLPSVEVWSTEKYLNYIPDVFAAVRKEFGPDIHLLHDVHHR 236
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 429 IGSGRHGSVYRA-------ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
+G G G VY + P +A+K N + + ++ EF E + +
Sbjct: 55 LGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNE---AASMRERIEFLNEASVMKEFNCH 110
Query: 482 NIVKFYGFCSHARHSILIYEYLKRGSLATNL 512
++V+ G S + +++I E + RG L + L
Sbjct: 111 HVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 141
>pdb|3JUH|A Chain A, Crystal Structure Of A Mutant Of Human Protein Kinase
Ck2alpha With Altered Cosubstrate Specificity
pdb|3JUH|B Chain B, Crystal Structure Of A Mutant Of Human Protein Kinase
Ck2alpha With Altered Cosubstrate Specificity
Length = 335
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 499 IYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEH-KAHVSDFGIAKFLKPDSSNWSAL 557
+YE LK A + + D+ NVL+D EH K + D+G+A+F P ++
Sbjct: 137 MYEILK----ALDYCHSMGIMHRDVKPHNVLIDHEHRKLRLIDWGLAEFYHP-GQEYNVR 191
Query: 558 VGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHP 590
V + + P+ Y D++S + +I K P
Sbjct: 192 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEP 231
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 15/148 (10%)
Query: 172 LSTLNVSMNNITRSIPLEI-GNLSTLNEFDLS-LNHIVGKIPKEFGKLNSLTKLILRGNQ 229
L + +S N++ I ++ NL L+E + N+++ P+ F L +L L++ N
Sbjct: 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI-SNT 114
Query: 230 LIGHLPS--EIGSLTKL-----EFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQEL 282
I HLP +I SL K+ + +N+ T +S + S +++ L L+K IQE+
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI----LWLNK-NGIQEI 169
Query: 283 PKELGKLVQLSELELSHNFLGREIPSQI 310
QL EL LS N E+P+ +
Sbjct: 170 HNSAFNGTQLDELNLSDNNNLEELPNDV 197
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%)
Query: 99 ALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNF 158
++++ +G N R P +N P L + LE N++ F LT L +S+NN
Sbjct: 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159
Query: 159 FGEIASNWGKCPKLSTLNVSMNNIT 183
+ L L +S N +T
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRLT 184
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 36/86 (41%)
Query: 99 ALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNF 158
++++ +G N R P +N P L + LE N++ F LT L +S+NN
Sbjct: 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153
Query: 159 FGEIASNWGKCPKLSTLNVSMNNITR 184
+ L L +S N +T
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRLTH 179
>pdb|2Y38|A Chain A, Laminin Alpha5 Chain N-Terminal Fragment
Length = 403
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 177 VSMNNITRSIPLEIGNL--STLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHL 234
+ +R +PLE G + S +N +LN + ++F K ++ LR N L+GHL
Sbjct: 180 ICTTEYSRIVPLENGEIVVSLVNGRPGALNFSYSPLLRDFTKATNIRLRFLRTNTLLGHL 239
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 241 LTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELEL 297
LTKL+ L+L N+ S ++P L L KL L LSK I +L + L L L LEL
Sbjct: 155 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK-NHISDL-RALAGLKNLDVLEL 207
>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|B Chain B, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|C Chain C, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|D Chain D, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2CKE|A Chain A, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|B Chain B, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|C Chain C, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|D Chain D, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
Length = 321
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 39/211 (18%)
Query: 418 RAINDF-DAKYCIGSGRHGSVYRAELPSKEFLAVKKF---NSPLPSDQIADQKEFFAEIE 473
+ + DF D +GSG+ V + S KF S + ++E E+
Sbjct: 8 QKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVS 67
Query: 474 ALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISS--KNVL-- 529
L ++ H N++ + + +LI E + G L L+ + E + +S K +L
Sbjct: 68 ILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDG 127
Query: 530 ---LDLEHKAHVS---------------------DFGIAKFLKPDSSNWSALVGTYRYVA 565
L + AH DFG+A ++ D + + GT +VA
Sbjct: 128 VNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE-DGVEFKNIFGTPEFVA 186
Query: 566 PDYRK------KCDVYSFRVLALEVIKGKHP 590
P+ + D++S V+ ++ G P
Sbjct: 187 PEIVNYEPLGLEADMWSIGVITYILLSGASP 217
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 238 IGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELEL 297
+ LTKL+ L+L N+ S ++P L L KL L LSK I +L + L L L LEL
Sbjct: 172 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK-NHISDL-RALAGLKNLDVLEL 227
>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|C Chain C, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|D Chain D, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|E Chain E, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|F Chain F, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|G Chain G, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|H Chain H, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
Length = 288
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 39/211 (18%)
Query: 418 RAINDF-DAKYCIGSGRHGSVYRAELPSKEFLAVKKF---NSPLPSDQIADQKEFFAEIE 473
+ + DF D +GSG+ V + S KF S + ++E E+
Sbjct: 8 QKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVS 67
Query: 474 ALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISS--KNVL-- 529
L ++ H N++ + + +LI E + G L L+ + E + +S K +L
Sbjct: 68 ILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDG 127
Query: 530 ---LDLEHKAHVS---------------------DFGIAKFLKPDSSNWSALVGTYRYVA 565
L + AH DFG+A ++ D + + GT +VA
Sbjct: 128 VNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE-DGVEFKNIFGTPEFVA 186
Query: 566 PDYRK------KCDVYSFRVLALEVIKGKHP 590
P+ + D++S V+ ++ G P
Sbjct: 187 PEIVNYEPLGLEADMWSIGVITYILLSGASP 217
>pdb|2AC5|A Chain A, Structure Of Human Mnk2 Kinase Domain Mutant D228g
pdb|2HW7|A Chain A, Crystal Structure Of Mnk2-D228g In Complex With
Staurosporine
Length = 316
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 50/170 (29%)
Query: 469 FAEIEALTKIR-HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------ 521
F E+E L + + HRN+++ F L++E ++ GS+ +++ EL
Sbjct: 58 FREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKRRHFNELEASVVV 117
Query: 522 ------------------DISSKNVLLDLEHKAHVS-----DFGIAKFLK--PDSSNWS- 555
D+ +N+L EH VS DFG+ +K D S S
Sbjct: 118 QDVASALDFLHNKGIAHRDLKPENIL--CEHPNQVSPVKICDFGLGSGIKLNGDCSPIST 175
Query: 556 ----ALVGTYRYVAPD-----------YRKKCDVYSFRVLALEVIKGKHP 590
G+ Y+AP+ Y K+CD++S V+ ++ G P
Sbjct: 176 PELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPP 225
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 238 IGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELEL 297
+ LTKL+ L+L N+ S ++P L L KL L LSK I +L + L L L LEL
Sbjct: 150 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK-NHISDL-RALAGLKNLDVLEL 205
>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|E Chain E, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|C Chain C, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|B Chain B, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|F Chain F, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|D Chain D, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|H Chain H, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|G Chain G, Human Death-Associated Kinase Drp-1, Mutant S308d D40
Length = 321
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 39/211 (18%)
Query: 418 RAINDF-DAKYCIGSGRHGSVYRAELPSKEFLAVKKF---NSPLPSDQIADQKEFFAEIE 473
+ + DF D +GSG+ V + S KF S + ++E E+
Sbjct: 8 QKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVS 67
Query: 474 ALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISS--KNVL-- 529
L ++ H N++ + + +LI E + G L L+ + E + +S K +L
Sbjct: 68 ILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDG 127
Query: 530 ---LDLEHKAHVS---------------------DFGIAKFLKPDSSNWSALVGTYRYVA 565
L + AH DFG+A ++ D + + GT +VA
Sbjct: 128 VNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE-DGVEFKNIFGTPEFVA 186
Query: 566 PDYRK------KCDVYSFRVLALEVIKGKHP 590
P+ + D++S V+ ++ G P
Sbjct: 187 PEIVNYEPLGLEADMWSIGVITYILLSGASP 217
>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277
Length = 277
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 82/207 (39%), Gaps = 42/207 (20%)
Query: 423 FDAKYCIGSGRHGSVYRAELPSKEFLAVKKF---NSPLPSDQIADQKEFFAEIEALTKIR 479
+D +GSG+ V + S KF S + +++ E+ L +I+
Sbjct: 13 YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ 72
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAEEL------------ 521
H N++ + + ILI E + G L +L+ + A E L
Sbjct: 73 HPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHS 132
Query: 522 ------DISSKNVLLDLEH-----KAHVSDFGIAKFLKPDSSN-WSALVGTYRYVAPDYR 569
D+ +N++L L+ + + DFG+A K D N + + GT +VAP+
Sbjct: 133 LQIAHFDLKPENIML-LDRNVPKPRIKIIDFGLAH--KIDFGNEFKNIFGTPEFVAPEIV 189
Query: 570 K------KCDVYSFRVLALEVIKGKHP 590
+ D++S V+ ++ G P
Sbjct: 190 NYEPLGLEADMWSIGVITYILLSGASP 216
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 238 IGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELEL 297
+ LTKL+ L+L N+ S ++P L L KL L LSK I +L + L L L LEL
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK-NHISDL-RALAGLKNLDVLEL 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,723,956
Number of Sequences: 62578
Number of extensions: 827599
Number of successful extensions: 3683
Number of sequences better than 100.0: 990
Number of HSP's better than 100.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 571
Number of HSP's that attempted gapping in prelim test: 2241
Number of HSP's gapped (non-prelim): 1422
length of query: 667
length of database: 14,973,337
effective HSP length: 105
effective length of query: 562
effective length of database: 8,402,647
effective search space: 4722287614
effective search space used: 4722287614
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)