BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042738
(107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 36/48 (75%)
Query: 12 FSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
++G SMNPA +FG AV+ G+++N +YWVGP+ GA +AG +Y+ V P
Sbjct: 224 YTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCP 271
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 36/48 (75%)
Query: 12 FSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
++G SMNPA +FG AV+ G+++N +YWVGP+ GA +AG +Y+ V P
Sbjct: 185 YTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCP 232
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 36/48 (75%)
Query: 12 FSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
++G SMNPA +FG AV+ G+++N +YWVGP+ GA +AG +Y+ V P
Sbjct: 185 YTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCP 232
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 36/48 (75%)
Query: 12 FSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
++G SMNPA +FG AV+ G+++N +YWVGP+ GA +AG +Y+ V P
Sbjct: 176 YTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCP 223
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 12 FSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
++G MNPA +F A++ +F N VYWVGP+ GA + L+YD ++FP
Sbjct: 178 YTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFP 225
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 12 FSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
++G MNPA +F A++ +F N VYWVGP+ GA + L+YD ++FP
Sbjct: 178 YTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFP 225
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 12 FSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
++G +NPA +FGSAV+ +F N ++WVGP G A+A L+YD ++ P
Sbjct: 186 YTGCGINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFILAP 233
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 12 FSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
++G MNPA +F A++ +F N VYWVGP+ GA + L+YD ++FP
Sbjct: 174 YTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFP 221
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 12 FSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
++G MNPA +F A++ +F N VYWVGP+ GA + L+YD ++FP
Sbjct: 172 YTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFP 219
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 36/48 (75%)
Query: 12 FSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
++G +NPA +FGS+V+ +F++ ++WVGP GAA+A L+YD ++ P
Sbjct: 188 YTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAP 235
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 12 FSGGSMNPACAFGSAVVAGSFKN-QAVYWVGPLFGAAVAGLVYDIVVFPAQVQDS 65
F+G SMNPA +FG AVV F V+WVGP+ GA +A ++Y ++FP + S
Sbjct: 180 FTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPNSLSLS 234
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 7 LATGPFSGGSMNPACAFGSAVVAGSFK---NQAVYWVGPLFGAAVAGLVYDIVVFPAQVQ 63
LAT P +G +NPA +FG+AV+ S K +Q ++WVGP GAAVA + V+ A ++
Sbjct: 211 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 270
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 7 LATGPFSGGSMNPACAFGSAVVAGSFK---NQAVYWVGPLFGAAVAGLVYDIVVFPAQVQ 63
LAT P +G +NPA +FG+AV+ S K +Q ++WVGP GAAVA + V+ A ++
Sbjct: 234 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 293
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 7 LATGPFSGGSMNPACAFGSAVVAGSFK---NQAVYWVGPLFGAAVAGLVYDIVVFPAQVQ 63
LAT P +G +NPA +FG+AV+ S K +Q ++WVGP GAAVA + V+ A ++
Sbjct: 234 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 293
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 7 LATGPFSGGSMNPACAFGSAVVAGSFK---NQAVYWVGPLFGAAVAGLVYDIVVFPAQVQ 63
LAT P +G +NPA +FG+AV+ S K +Q ++WVGP GAAVA + V+ A ++
Sbjct: 230 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 289
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 7 LATGPFSGGSMNPACAFGSAVVAGSFK---NQAVYWVGPLFGAAVAGLVYDIVVFPAQVQ 63
LAT P +G +NPA +FG+AV+ S K +Q ++WVGP GAAVA + V+ A ++
Sbjct: 211 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 270
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 12 FSGGSMNPACAFGSAVVAGSFKN-QAVYWVGPLFGAAVAGLVYDI 55
++G +NPA +FG AV A SF N +YW+GP+ GA +A ++ +
Sbjct: 218 YTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQM 262
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 10 GPFSGGSMNPACAFGS----AVVAGS--FKNQAVYWVGPLFGAAVAGLVYD 54
G SG S+NPA FG + AG+ + ++Y +GP+ GA +A L Y
Sbjct: 191 GNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQ 241
>pdb|3LUY|A Chain A, Putative Chorismate Mutase From Bifidobacterium
Adolescentis
Length = 329
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 44 FGAAVAGLVYDIVVFPAQVQDSIAGVSDGIGGTQRREVVR 83
FG A+ G +YDI +QD +D + + R EV R
Sbjct: 154 FGPAICGELYDITRIGTAIQDYQGAATDFLVLSPRAEVAR 193
>pdb|3P30|L Chain L, Crystal Structure Of The Cluster Ii Fab 1281 In Complex
With Hiv-1 Gp41 Ectodomain
Length = 213
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 34 NQAVYWVGPLFGAAVAGLVYDIVVFPAQVQDSIAGVSDGIGGTQRREVVRNINTIDMSKM 93
N VYW L G A L+Y + P+ V D +G G + +R+ + D
Sbjct: 31 NNYVYWYQQLPGTAPKLLIYKNNIRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD---- 86
Query: 94 YVLVCLIDDLS 104
Y D LS
Sbjct: 87 YYCAAWDDSLS 97
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 10 GPFSGGSMNPACAFGSAVVA--GSFKNQAV-------YWVGPLFGAAVAGLV 52
GP +G +MNPA FG V A + N A Y++ PLFG V +V
Sbjct: 195 GPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIV 246
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 10 GPFSGGSMNPACAFGSAVVA--GSFKNQAV-------YWVGPLFGAAVAGLV 52
GP +G +MNPA FG V A + N A Y++ PLFG V +V
Sbjct: 195 GPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIV 246
>pdb|4IRY|B Chain B, Influenza A Virus Tail-loop Free Nucleoprotein At 2.8 A
Resolution
pdb|4IRY|A Chain A, Influenza A Virus Tail-loop Free Nucleoprotein At 2.8 A
Resolution
Length = 483
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 1 MAGANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVG 41
+A + ++ G + S PAC +GSAV +G F+ + VG
Sbjct: 259 LARSALILRGSVAHKSCLPACVYGSAVASGYDFEREGYSLVG 300
>pdb|2IQH|A Chain A, Influenza A Virus Nucleoprotein Np At 3.2a Resolution
pdb|2IQH|B Chain B, Influenza A Virus Nucleoprotein Np At 3.2a Resolution
pdb|2IQH|C Chain C, Influenza A Virus Nucleoprotein Np At 3.2a Resolution
pdb|2WFS|A Chain A, Fitting Of Influenza Virus Np Structure Into The 9-Fold
Symmetryzed Cryoem Reconstruction Of An Active Rnp
Particle.
pdb|2WFS|B Chain B, Fitting Of Influenza Virus Np Structure Into The 9-Fold
Symmetryzed Cryoem Reconstruction Of An Active Rnp
Particle.
pdb|2WFS|C Chain C, Fitting Of Influenza Virus Np Structure Into The 9-Fold
Symmetryzed Cryoem Reconstruction Of An Active Rnp
Particle.
pdb|2WFS|D Chain D, Fitting Of Influenza Virus Np Structure Into The 9-Fold
Symmetryzed Cryoem Reconstruction Of An Active Rnp
Particle.
pdb|2WFS|E Chain E, Fitting Of Influenza Virus Np Structure Into The 9-Fold
Symmetryzed Cryoem Reconstruction Of An Active Rnp
Particle.
pdb|2WFS|F Chain F, Fitting Of Influenza Virus Np Structure Into The 9-Fold
Symmetryzed Cryoem Reconstruction Of An Active Rnp
Particle.
pdb|2WFS|G Chain G, Fitting Of Influenza Virus Np Structure Into The 9-Fold
Symmetryzed Cryoem Reconstruction Of An Active Rnp
Particle.
pdb|2WFS|H Chain H, Fitting Of Influenza Virus Np Structure Into The 9-Fold
Symmetryzed Cryoem Reconstruction Of An Active Rnp
Particle.
pdb|2WFS|I Chain I, Fitting Of Influenza Virus Np Structure Into The 9-Fold
Symmetryzed Cryoem Reconstruction Of An Active Rnp
Particle.
pdb|3RO5|A Chain A, Crystal Structure Of Influenza A Virus Nucleoprotein With
Ligand
pdb|3RO5|B Chain B, Crystal Structure Of Influenza A Virus Nucleoprotein With
Ligand
pdb|3TG6|A Chain A, Crystal Structure Of Influenza A Virus Nucleoprotein With
Ligand
pdb|3TG6|B Chain B, Crystal Structure Of Influenza A Virus Nucleoprotein With
Ligand
pdb|4BBL|A Chain A, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|B Chain B, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|C Chain C, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|D Chain D, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|E Chain E, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|F Chain F, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|G Chain G, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|H Chain H, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|I Chain I, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|J Chain J, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|K Chain K, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|L Chain L, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|M Chain M, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|N Chain N, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|O Chain O, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|P Chain P, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|Q Chain Q, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|R Chain R, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|S Chain S, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|T Chain T, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|U Chain U, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|V Chain V, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|W Chain W, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|X Chain X, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions
Length = 499
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 1 MAGANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVG 41
+A + ++ G + S PAC +GSAV +G F+ + VG
Sbjct: 252 LARSALILRGSVAHKSCLPACVYGSAVASGYDFEREGYSLVG 293
>pdb|2YMN|A Chain A, Organization Of The Influenza Virus Replication Machinery
pdb|2YMN|B Chain B, Organization Of The Influenza Virus Replication Machinery
pdb|2YMN|C Chain C, Organization Of The Influenza Virus Replication Machinery
pdb|2YMN|D Chain D, Organization Of The Influenza Virus Replication Machinery
pdb|2YMN|E Chain E, Organization Of The Influenza Virus Replication Machinery
pdb|2YMN|F Chain F, Organization Of The Influenza Virus Replication Machinery
Length = 498
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 1 MAGANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVG 41
+A + ++ G + S PAC +GSAV +G F+ + VG
Sbjct: 259 LARSALILRGSVAHKSCLPACVYGSAVASGYDFEREGYSLVG 300
>pdb|3G04|A Chain A, Crystal Structure Of The Tsh Receptor In Complex With A
Thyroid- Stimulating Autoantibody
Length = 216
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 34 NQAVYWVGPLFGAAVAGLVYDIVVFPAQVQDSIAGVSDGIGGTQRREVVRNINTIDMSKM 93
N AV W L G A L+Y P+ V D +G GT +R + + D +
Sbjct: 31 NNAVNWYQQLPGKAPKLLIYYDDQLPSGVSDRFSG---SRSGTSASLAIRGLQSEDEADY 87
Query: 94 Y 94
Y
Sbjct: 88 Y 88
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 3 GANVLATGPFSGGSMNPACAFG-----SAVVAGSFKNQAVYWVGPLFGAAVAGLVYD 54
G + G +G S+NPA FG S + ++ +Y +GP+ GA A +Y+
Sbjct: 185 GGIITTIGNITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLYN 241
>pdb|3LMJ|L Chain L, Structure Of Human Anti Hiv 21c Fab
pdb|3LQA|L Chain L, Crystal Structure Of Clade C Gp120 In Complex With Scd4
And
Length = 217
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 37 VYWVGPLFGAAVAGLVYDIVVFPAQVQDSIAGVSDGIGGT 76
V W L GAA L++D P+ + D +G G T
Sbjct: 34 VSWYQQLPGAAPKLLIFDDTQRPSGIPDRFSGSKSGTSAT 73
>pdb|2O05|A Chain A, Human Spermidine Synthase
pdb|2O05|B Chain B, Human Spermidine Synthase
pdb|2O06|A Chain A, Human Spermidine Synthase
pdb|2O06|B Chain B, Human Spermidine Synthase
pdb|2O07|A Chain A, Human Spermidine Synthase
pdb|2O07|B Chain B, Human Spermidine Synthase
pdb|2O0L|A Chain A, Human Spermidine Synthase
pdb|2O0L|B Chain B, Human Spermidine Synthase
Length = 304
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 10 GPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVY-------DIVVFPAQV 62
G G PA + +A+ G F+ W G V L++ DI+VF ++
Sbjct: 1 GSMEPGPDGPAASGPAAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKT 60
Query: 63 QDSIAGVSDGIGGTQRRE 80
++ + I T+R E
Sbjct: 61 YGNVLVLDGVIQCTERDE 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,020,592
Number of Sequences: 62578
Number of extensions: 105849
Number of successful extensions: 398
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 59
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)