Query 042738
Match_columns 107
No_of_seqs 126 out of 1076
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 08:56:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0223 Aquaporin (major intri 99.7 3.6E-19 7.7E-24 139.1 2.5 61 3-63 171-231 (238)
2 PLN00182 putative aquaporin NI 99.6 1.2E-16 2.5E-21 127.3 1.9 56 4-59 200-255 (283)
3 PLN00184 aquaporin NIP1; Provi 99.6 9.6E-17 2.1E-21 128.4 1.2 63 4-66 219-281 (296)
4 PLN00027 aquaporin TIP; Provis 99.6 1.2E-16 2.5E-21 124.7 1.3 57 5-61 186-242 (252)
5 PLN00166 aquaporin TIP2; Provi 99.6 2.1E-16 4.7E-21 123.4 2.5 58 4-61 183-240 (250)
6 PLN00026 aquaporin NIP; Provi 99.6 3.3E-16 7.2E-21 125.6 1.0 61 3-63 227-287 (298)
7 PLN00167 aquaporin TIP5; Provi 99.5 1.3E-15 2.8E-20 119.5 1.9 60 5-64 187-246 (256)
8 PRK05420 aquaporin Z; Provisio 99.5 1.4E-15 3E-20 117.4 1.6 56 5-60 173-230 (231)
9 PLN00183 putative aquaporin NI 99.5 2.4E-15 5.2E-20 119.2 1.2 59 4-62 202-260 (274)
10 PTZ00016 aquaglyceroporin; Pro 99.5 1.9E-14 4E-19 114.9 2.3 56 5-60 227-292 (294)
11 cd00333 MIP Major intrinsic pr 99.4 1.8E-14 3.8E-19 109.9 -0.2 53 4-56 173-228 (228)
12 PF00230 MIP: Major intrinsic 99.4 3.2E-14 7E-19 107.2 -1.7 48 6-53 180-227 (227)
13 PLN00184 aquaporin NIP1; Provi 99.4 5.5E-14 1.2E-18 112.6 -0.5 59 2-60 98-157 (296)
14 TIGR00861 MIP MIP family chann 99.4 6.5E-14 1.4E-18 106.0 -0.5 49 5-53 166-216 (216)
15 PLN00026 aquaporin NIP; Provi 99.4 6.6E-14 1.4E-18 112.4 -0.7 59 2-60 115-174 (298)
16 PLN00166 aquaporin TIP2; Provi 99.3 4.5E-13 9.7E-18 104.8 -0.8 57 2-58 67-124 (250)
17 PLN00183 putative aquaporin NI 99.2 1E-12 2.3E-17 104.2 -0.7 57 3-59 90-147 (274)
18 PLN00167 aquaporin TIP5; Provi 99.2 1.6E-12 3.6E-17 102.0 0.2 58 2-59 71-129 (256)
19 PLN00182 putative aquaporin NI 99.2 1.2E-12 2.6E-17 104.3 -0.6 56 3-58 87-143 (283)
20 PRK05420 aquaporin Z; Provisio 99.2 1.4E-12 3.1E-17 100.7 -0.5 57 3-59 48-105 (231)
21 COG0580 GlpF Glycerol uptake f 99.2 1.9E-12 4.1E-17 101.7 -0.3 63 2-64 52-115 (241)
22 PLN00027 aquaporin TIP; Provis 99.2 1.9E-12 4E-17 101.1 -0.9 56 3-58 70-126 (252)
23 PTZ00016 aquaglyceroporin; Pro 99.2 1.9E-12 4E-17 103.4 -1.2 58 3-60 95-153 (294)
24 TIGR00861 MIP MIP family chann 99.2 2.3E-12 5.1E-17 97.5 -0.7 58 4-61 47-105 (216)
25 COG0580 GlpF Glycerol uptake f 99.2 5.2E-12 1.1E-16 99.2 1.2 54 5-58 178-240 (241)
26 cd00333 MIP Major intrinsic pr 99.2 2.6E-12 5.7E-17 97.9 -1.7 59 4-62 47-106 (228)
27 KOG0224 Aquaporin (major intri 99.1 1.2E-11 2.7E-16 100.0 0.2 58 2-59 77-135 (316)
28 PF00230 MIP: Major intrinsic 98.9 1E-10 2.3E-15 88.1 -2.8 56 5-60 61-117 (227)
29 KOG0223 Aquaporin (major intri 98.8 5.3E-10 1.2E-14 87.6 -0.4 59 2-60 55-114 (238)
30 KOG0224 Aquaporin (major intri 98.8 2.2E-09 4.7E-14 87.1 0.9 57 8-64 214-281 (316)
31 COG0707 MurG UDP-N-acetylgluco 64.5 5.7 0.00012 32.7 2.4 27 6-32 3-29 (357)
32 PRK12446 undecaprenyldiphospho 57.9 6.4 0.00014 31.7 1.6 22 8-29 6-27 (352)
33 KOG1330 Sugar transporter/spin 35.4 28 0.00061 30.5 2.1 37 34-70 187-224 (493)
34 PRK09979 putative rho operon l 34.7 11 0.00024 21.1 -0.3 18 10-27 4-21 (33)
35 PF03918 CcmH: Cytochrome C bi 33.9 14 0.0003 27.1 0.0 37 34-70 100-136 (148)
36 PF03033 Glyco_transf_28: Glyc 32.4 17 0.00038 24.2 0.3 20 11-30 6-25 (139)
37 PF15176 LRR19-TM: Leucine-ric 28.5 1E+02 0.0022 21.7 3.6 50 33-82 14-74 (102)
38 PF14034 Spore_YtrH: Sporulati 25.4 86 0.0019 22.0 2.8 47 14-60 53-102 (102)
39 PF05656 DUF805: Protein of un 20.7 2.4E+02 0.0053 18.6 4.3 22 40-64 90-111 (120)
No 1
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.75 E-value=3.6e-19 Score=139.05 Aligned_cols=61 Identities=54% Similarity=1.066 Sum_probs=56.5
Q ss_pred EEEEeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcCCccc
Q 042738 3 GANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQ 63 (107)
Q Consensus 3 ~~~v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p~~~~ 63 (107)
.+.+++++++||++|||||+|||+++.+.|++||+||+||++|+++++++|+.++.|..++
T Consensus 171 ~~~~l~~g~~TG~sMNPArSfGpAvv~~~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~~~~ 231 (238)
T KOG0223|consen 171 GLNILAAGPFTGASMNPARSFGPAVVYGSWDDHWIYWVGPLLGAILAALIYRLVFIPDESE 231 (238)
T ss_pred HHHHHeecCcCcCccCcHHHhhHHHHhcCCCcEEEEEhhHHHHHHHHHHHHHHhccCcccc
Confidence 4567888999999999999999999999999999999999999999999999999998433
No 2
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.62 E-value=1.2e-16 Score=127.26 Aligned_cols=56 Identities=46% Similarity=0.874 Sum_probs=51.7
Q ss_pred EEEeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcC
Q 042738 4 ANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59 (107)
Q Consensus 4 ~~v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p 59 (107)
+.+++.+++||+||||||+|||++..+.|+++|+||+||++|+++++++|++++.+
T Consensus 200 ~~~~~~g~~SGa~lNPARt~gpal~~~~~~~~wvY~vap~lGA~lgally~~l~~~ 255 (283)
T PLN00182 200 LNVFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIIAGGFVYNLIRFT 255 (283)
T ss_pred HHHHHccccCccccChHHHHHHHHHhccccceeHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45567889999999999999999998899999999999999999999999999854
No 3
>PLN00184 aquaporin NIP1; Provisional
Probab=99.61 E-value=9.6e-17 Score=128.41 Aligned_cols=63 Identities=37% Similarity=0.601 Sum_probs=56.9
Q ss_pred EEEeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcCCcccccc
Q 042738 4 ANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQDSI 66 (107)
Q Consensus 4 ~~v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p~~~~~~~ 66 (107)
+.+++.+++||++|||||+|||+++.+.|+++|+||+||++|+++++++|++++.++.+.+++
T Consensus 219 ~~~~~~g~~TG~smNPAR~~GPal~~~~~~~~WVy~vgPilGa~laal~y~~l~~~~~~~~~~ 281 (296)
T PLN00184 219 LNVLIAAPVSSASMNPGRSLGPAMVYGCYKGIWIYIVAPTLGAIAGAWVYNTVRYTDKPLREI 281 (296)
T ss_pred HHHHHhcccCccccCchhhHHHHHHhhcccccchHHhHHHHHHHHHHHHHHHHhcCCCcchhh
Confidence 345678999999999999999999999999999999999999999999999999888766544
No 4
>PLN00027 aquaporin TIP; Provisional
Probab=99.61 E-value=1.2e-16 Score=124.73 Aligned_cols=57 Identities=51% Similarity=0.998 Sum_probs=52.5
Q ss_pred EEeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcCCc
Q 042738 5 NVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQ 61 (107)
Q Consensus 5 ~v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p~~ 61 (107)
.+++++++||++|||||+|||+++.+.|+++|+||+||++|+++++++|++++.++.
T Consensus 186 ~~~~~g~~TG~~~NPAR~~gPal~~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~~ 242 (252)
T PLN00027 186 NILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWAGPLIGGGIAGLVYELIFIGST 242 (252)
T ss_pred HHHhcccccccccCcchhHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 456778999999999999999999999999999999999999999999999987644
No 5
>PLN00166 aquaporin TIP2; Provisional
Probab=99.61 E-value=2.1e-16 Score=123.43 Aligned_cols=58 Identities=60% Similarity=1.070 Sum_probs=51.9
Q ss_pred EEEeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcCCc
Q 042738 4 ANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQ 61 (107)
Q Consensus 4 ~~v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p~~ 61 (107)
+.++.++++||++|||||+|||+++.+.|+++|+||+||++|+++++++|+.++.+..
T Consensus 183 ~~~~~~~~~tG~~~NPAR~~gPal~~~~~~~~wvywvgPi~Ga~~aa~~y~~l~~~~~ 240 (250)
T PLN00166 183 ANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVFIGSY 240 (250)
T ss_pred HHHHcccCCCCCccCchHhhHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHhcccC
Confidence 3456788999999999999999999999999999999999999999999998865333
No 6
>PLN00026 aquaporin NIP; Provisional
Probab=99.58 E-value=3.3e-16 Score=125.62 Aligned_cols=61 Identities=36% Similarity=0.605 Sum_probs=54.9
Q ss_pred EEEEeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcCCccc
Q 042738 3 GANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQ 63 (107)
Q Consensus 3 ~~~v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p~~~~ 63 (107)
++++++++++||++|||||+|||++..++|+++|+||+||++|+++++++|+.+..++++.
T Consensus 227 ~~~~l~~g~~TGa~mNPARtlgPal~~~~~~~~wVy~vaPilGAilga~ly~~~~~~~~~~ 287 (298)
T PLN00026 227 MLNILVAGPSTGGSMNPVRTLGPAVAAGNYRAIWIYLVAPTLGALAGAGTYTAVKLREEDG 287 (298)
T ss_pred HHHHHHhcccCccccChHHHHHHHHhcCCchheeHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 3455678899999999999999999999999999999999999999999999997776643
No 7
>PLN00167 aquaporin TIP5; Provisional
Probab=99.55 E-value=1.3e-15 Score=119.50 Aligned_cols=60 Identities=85% Similarity=1.382 Sum_probs=53.9
Q ss_pred EEeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcCCcccc
Q 042738 5 NVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQD 64 (107)
Q Consensus 5 ~v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p~~~~~ 64 (107)
..+.++++||++|||||+|||++..+.|+++|+||+||++|+++++++|++++.|..+.+
T Consensus 187 ~~~~~g~~TG~a~NPAR~~gPal~~~~~~~~wvywvgP~~Ga~l~a~~y~~l~~~~~~~~ 246 (256)
T PLN00167 187 NVLAAGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLLGGAVAGLLYDNVVFPTQDDR 246 (256)
T ss_pred HHHhccCCCCcccCcccchHHHHhccCccCcEEEeHHHHHHHHHHHHHHHHHhCCCcCCC
Confidence 456778999999999999999999989999999999999999999999999997665443
No 8
>PRK05420 aquaporin Z; Provisional
Probab=99.54 E-value=1.4e-15 Score=117.43 Aligned_cols=56 Identities=30% Similarity=0.629 Sum_probs=49.6
Q ss_pred EEeeeccccCCcCChHhHHHHHHhcCCC--CcceeehhhhhhHHHHHHHHHHHHhcCC
Q 042738 5 NVLATGPFSGGSMNPACAFGSAVVAGSF--KNQAVYWVGPLFGAAVAGLVYDIVVFPA 60 (107)
Q Consensus 5 ~v~~~g~~SGasLNPArs~gpav~~~~w--~~~wvY~vap~lGAilaally~~l~~p~ 60 (107)
.+++++++||++|||||+|||+++.+.| +++|+||+||++|+++++++|++++..+
T Consensus 173 ~~~~~~~~TG~s~NPAR~~gpal~~g~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~ 230 (231)
T PRK05420 173 IHLISIPVTNTSVNPARSTGVALFVGGWALEQLWLFWVAPIVGAIIGGLIYRLLLEKD 230 (231)
T ss_pred HHHHhhccCCCccCcHHHHHHHHHhCCCCccceEEeehHHHHHHHHHHHHHHHHhccC
Confidence 3456789999999999999999998755 5899999999999999999999987654
No 9
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.52 E-value=2.4e-15 Score=119.21 Aligned_cols=59 Identities=41% Similarity=0.691 Sum_probs=53.7
Q ss_pred EEEeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcCCcc
Q 042738 4 ANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQV 62 (107)
Q Consensus 4 ~~v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p~~~ 62 (107)
+.+++++++||+||||||+|+|++.+..|+++|+||+||++|+++++++|+.++.++..
T Consensus 202 ~~v~~~g~~TG~~~NPArtlgpai~~~~~~~~wvy~vapilGailaa~l~~~l~~~~~~ 260 (274)
T PLN00183 202 LAVLITGPVSGGSMNPARSLGPAIVSWDFKDIWIYITAPTIGAVAGALMFHLLRLRTQP 260 (274)
T ss_pred HHHHhccCCCCCEeCHHHHHHHHHhCCChhheehHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 34567889999999999999999999899999999999999999999999999876654
No 10
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.46 E-value=1.9e-14 Score=114.87 Aligned_cols=56 Identities=29% Similarity=0.444 Sum_probs=48.7
Q ss_pred EEeeeccccCCcCChHhHHHHHHhc----C--CCC----cceeehhhhhhHHHHHHHHHHHHhcCC
Q 042738 5 NVLATGPFSGGSMNPACAFGSAVVA----G--SFK----NQAVYWVGPLFGAAVAGLVYDIVVFPA 60 (107)
Q Consensus 5 ~v~~~g~~SGasLNPArs~gpav~~----~--~w~----~~wvY~vap~lGAilaally~~l~~p~ 60 (107)
..++.++.||++|||||+|||+++. + .|+ ++|+||+||++|+++|+++|++++.|.
T Consensus 227 i~~~~g~~TG~smNPAR~fGPal~~~~~~g~~~~~~~~~~~WVy~vgP~vGa~~aally~~ll~~~ 292 (294)
T PTZ00016 227 IGISFGGNTGYALNPARDLGPRLFSAILWGSEVFTKDNYYFWVPLVAPFVGAVLGMFLYDKFIPPL 292 (294)
T ss_pred HHHhccCCCCCcccchhhHHHHHHHHHhccccccCcCCceeeeeehHHHHHHHHHHHHHHHHhCCC
Confidence 3456788999999999999999996 2 454 689999999999999999999998765
No 11
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.43 E-value=1.8e-14 Score=109.88 Aligned_cols=53 Identities=53% Similarity=0.877 Sum_probs=47.7
Q ss_pred EEEeeeccccCCcCChHhHHHHHHhcCC---CCcceeehhhhhhHHHHHHHHHHHH
Q 042738 4 ANVLATGPFSGGSMNPACAFGSAVVAGS---FKNQAVYWVGPLFGAAVAGLVYDIV 56 (107)
Q Consensus 4 ~~v~~~g~~SGasLNPArs~gpav~~~~---w~~~wvY~vap~lGAilaally~~l 56 (107)
+.++.++++||+|+||||+|+|++.++. |+++|+||++|++|+++++++|+++
T Consensus 173 ~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~~ 228 (228)
T cd00333 173 AIGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228 (228)
T ss_pred HHHHHhhcccccccCHhhchHHHHHhccccccceeehhhhHHHHHHHHHHHHHHhC
Confidence 3456678999999999999999999985 9999999999999999999999863
No 12
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.37 E-value=3.2e-14 Score=107.22 Aligned_cols=48 Identities=52% Similarity=0.998 Sum_probs=43.8
Q ss_pred EeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHH
Q 042738 6 VLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVY 53 (107)
Q Consensus 6 v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally 53 (107)
.+.+++.||++|||||+|||++..+.|+++|+||++|++|+++|+++|
T Consensus 180 ~~~~~~~tG~~~NPAr~~g~~l~~~~~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 180 VLAGGPYTGASLNPARALGPALFSGIWDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp HHHHHHHHST-SSHHHHHHHHHHHTHHTTTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCchhhcCceeecccCCeEEEEEehHHHHHHHHHhhC
Confidence 445678899999999999999999999999999999999999999987
No 13
>PLN00184 aquaporin NIP1; Provisional
Probab=99.37 E-value=5.5e-14 Score=112.56 Aligned_cols=59 Identities=19% Similarity=0.299 Sum_probs=53.3
Q ss_pred EEEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCC
Q 042738 2 AGANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPA 60 (107)
Q Consensus 2 V~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~ 60 (107)
|++++++.+++||+|+||||||++++.++ +|.++|+||++|++|+++|+++++.++...
T Consensus 98 v~~~i~~~g~iSGaH~NPAVTla~al~g~~~~~~~~~YiiaQllGA~lga~~~~~l~~~~ 157 (296)
T PLN00184 98 IMVLIYSLGHISGAHINPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLD 157 (296)
T ss_pred HHHHHHHhcCCCccccCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 44567788999999999999999999988 899999999999999999999999988643
No 14
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.36 E-value=6.5e-14 Score=106.00 Aligned_cols=49 Identities=49% Similarity=0.972 Sum_probs=44.9
Q ss_pred EEeeeccccCCcCChHhHHHHHHhcC--CCCcceeehhhhhhHHHHHHHHH
Q 042738 5 NVLATGPFSGGSMNPACAFGSAVVAG--SFKNQAVYWVGPLFGAAVAGLVY 53 (107)
Q Consensus 5 ~v~~~g~~SGasLNPArs~gpav~~~--~w~~~wvY~vap~lGAilaally 53 (107)
.++..+++||+|+||||+|+|++.++ +|+++|+||++|++|+++++++|
T Consensus 166 ~~~~~g~~sG~~~NPAr~l~~~l~~~~~~~~~~~vy~vap~~Ga~~a~~~y 216 (216)
T TIGR00861 166 IHLSMGPYTGTGMNPARSLGPALFAGLAGWGNHWVYWVGPIIGAILGALVY 216 (216)
T ss_pred HHHhCCCCcccccCchhhhhHHHHhccccccceeHHHHHHHHHHHHHHHhC
Confidence 45667899999999999999999987 89999999999999999999875
No 15
>PLN00026 aquaporin NIP; Provisional
Probab=99.36 E-value=6.6e-14 Score=112.39 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=53.2
Q ss_pred EEEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCC
Q 042738 2 AGANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPA 60 (107)
Q Consensus 2 V~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~ 60 (107)
|++.+++.+++||+|||||||+++++.++ +|.++|+||++|++|+++|+++++.++.+.
T Consensus 115 V~~~i~~~g~ISGaHlNPAVTla~al~g~~~~~~~~~YiiaQilGAi~aa~~~~~~~~~~ 174 (298)
T PLN00026 115 VMIVILSTGHISGAHLNPSLTIAFAALRHFPWKHVPAYIAAQVSASICASFALKGVFHPF 174 (298)
T ss_pred HHHHHHHhhccCccccCHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34556778999999999999999999987 899999999999999999999999998763
No 16
>PLN00166 aquaporin TIP2; Provisional
Probab=99.27 E-value=4.5e-13 Score=104.79 Aligned_cols=57 Identities=28% Similarity=0.447 Sum_probs=51.2
Q ss_pred EEEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhc
Q 042738 2 AGANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVF 58 (107)
Q Consensus 2 V~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~ 58 (107)
|++++++++++||+|+|||||+++++.++ +|.+.|+||++|++|+++++.+++.++.
T Consensus 67 v~~~i~~~g~iSGah~NPAvt~~~~l~g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~ 124 (250)
T PLN00166 67 LFVGVSIAANISGGHLNPAVTLGLAIGGNITIITGFFYWIAQCLGSIVACLLLVFVTN 124 (250)
T ss_pred HHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567788999999999999999999876 7899999999999999999999998864
No 17
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.23 E-value=1e-12 Score=104.21 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=51.7
Q ss_pred EEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcC
Q 042738 3 GANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59 (107)
Q Consensus 3 ~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p 59 (107)
++.+++.+++||+|+|||||+++++.++ +|..+|+||++|++|+++|+.+++.++..
T Consensus 90 ~~~i~~~g~vSGah~NPAvTla~~l~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~ 147 (274)
T PLN00183 90 VVVVFSIGSISGAHVNPSVTIAFATFGHFPWSKVPLYITAQTVGSVLATYVGVSVYGV 147 (274)
T ss_pred HHHHHHhhccCccccCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4456778999999999999999999988 89999999999999999999999888764
No 18
>PLN00167 aquaporin TIP5; Provisional
Probab=99.22 E-value=1.6e-12 Score=102.01 Aligned_cols=58 Identities=28% Similarity=0.519 Sum_probs=51.9
Q ss_pred EEEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcC
Q 042738 2 AGANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59 (107)
Q Consensus 2 V~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p 59 (107)
|++++++.+++||+|+|||+|+++++.++ +|...|+||++|++|+++++.+++.++..
T Consensus 71 v~~~i~~~g~iSGah~NPAvtl~~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 129 (256)
T PLN00167 71 LSSAVYIAANISGGHVNPAVTFGMAVGGHISVPTAMFYWISQMLASVMACLFLKVTTVG 129 (256)
T ss_pred HHHHHHHhhcccccccCHHHHHHHHHhCCCcHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44567888999999999999999999887 79999999999999999999999887644
No 19
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.22 E-value=1.2e-12 Score=104.34 Aligned_cols=56 Identities=23% Similarity=0.341 Sum_probs=51.4
Q ss_pred EEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhc
Q 042738 3 GANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVF 58 (107)
Q Consensus 3 ~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~ 58 (107)
++++++.+++||+|+|||+|+++++.++ +|.+.|+||++|++|+++|+++++.++.
T Consensus 87 ~~~i~~~g~iSGah~NPAVTla~~~~~~~~~~~~~~Yi~aQ~lGa~~ga~~~~~~~~ 143 (283)
T PLN00182 87 MVMIYSTGHISGAHFNPAVTVTFAIFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFN 143 (283)
T ss_pred HHHHHHhcCCCccccCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456778999999999999999999998 8999999999999999999999998884
No 20
>PRK05420 aquaporin Z; Provisional
Probab=99.22 E-value=1.4e-12 Score=100.66 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=50.7
Q ss_pred EEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcC
Q 042738 3 GANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59 (107)
Q Consensus 3 ~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p 59 (107)
++++++.+++||+|+|||+|+++.+.++ +|.+.|+||++|++|+++|+.+.+.++.+
T Consensus 48 ~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~~~~~Y~~aQ~lGa~~ga~l~~~~~~~ 105 (231)
T PRK05420 48 LTMAYAVGHISGGHFNPAVSVGLWAGGRFPAKELVPYIIAQVVGGIAAAAVLYLIASG 105 (231)
T ss_pred HHHHHHHhCcccccCCHHHHHHHHHhCCCCHHHhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456778999999999999999999987 89999999999999999999888777654
No 21
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.20 E-value=1.9e-12 Score=101.65 Aligned_cols=63 Identities=21% Similarity=0.341 Sum_probs=57.9
Q ss_pred EEEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCCcccc
Q 042738 2 AGANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQD 64 (107)
Q Consensus 2 V~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~~~~~ 64 (107)
|.+++|+.+++||+|+|||+|++.++.++ +|++...||++|++||++++.+...++.++..+-
T Consensus 52 V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~ 115 (241)
T COG0580 52 VLVAIYAFGGISGAHLNPAVTIALAVRGRFPWRKVLPYIVAQVLGAFAGAALLYLLYYGKILET 115 (241)
T ss_pred HHHHHHhccCcCccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhh
Confidence 45678899999999999999999999999 8999999999999999999999999999888544
No 22
>PLN00027 aquaporin TIP; Provisional
Probab=99.19 E-value=1.9e-12 Score=101.13 Aligned_cols=56 Identities=29% Similarity=0.510 Sum_probs=49.8
Q ss_pred EEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhc
Q 042738 3 GANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVF 58 (107)
Q Consensus 3 ~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~ 58 (107)
++++++++++||+|+|||||+++++.++ +|...|+||++|++|+++++++++.+..
T Consensus 70 ~~~i~~~~~iSGah~NPAvtl~~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 126 (252)
T PLN00027 70 FVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLLLKFSTG 126 (252)
T ss_pred HHHHHHHcccCccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556778899999999999999999777 7889999999999999999999987753
No 23
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.19 E-value=1.9e-12 Score=103.42 Aligned_cols=58 Identities=29% Similarity=0.457 Sum_probs=52.3
Q ss_pred EEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCC
Q 042738 3 GANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPA 60 (107)
Q Consensus 3 ~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~ 60 (107)
++++++++++||+|+|||+|+++++.++ +|...|.||++|++|+++|+++.+.++.++
T Consensus 95 ~~~i~~~g~iSG~h~NPAVTla~~l~g~i~~~~~~~YiiaQ~lGa~~ga~ll~~~~~~~ 153 (294)
T PTZ00016 95 TFGLLVSAGISGGHLNPAVTLGNAVFGKFPWKKLPGYFVAQLLGAFVGAACVYGLYYGF 153 (294)
T ss_pred HHHHHHhcccCcCccCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3456778899999999999999999998 899999999999999999999998887654
No 24
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.18 E-value=2.3e-12 Score=97.51 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=52.1
Q ss_pred EEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCCc
Q 042738 4 ANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQ 61 (107)
Q Consensus 4 ~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~~ 61 (107)
+.+++.+++||+|+|||+|+++++.++ +|.+.|+||++|++|+++++++++.++.++.
T Consensus 47 ~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~~y~~aQ~~Ga~~~~~~~~~~~~~~~ 105 (216)
T TIGR00861 47 TLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVPVYIVAQLIGAILGAALLYGLTSGLF 105 (216)
T ss_pred HHHHHHhcccccccCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 345667889999999999999999988 8999999999999999999999998887764
No 25
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.18 E-value=5.2e-12 Score=99.17 Aligned_cols=54 Identities=26% Similarity=0.468 Sum_probs=46.1
Q ss_pred EEeeeccccCCcCChHhHHHHHHhcC---------CCCcceeehhhhhhHHHHHHHHHHHHhc
Q 042738 5 NVLATGPFSGGSMNPACAFGSAVVAG---------SFKNQAVYWVGPLFGAAVAGLVYDIVVF 58 (107)
Q Consensus 5 ~v~~~g~~SGasLNPArs~gpav~~~---------~w~~~wvY~vap~lGAilaally~~l~~ 58 (107)
..+..++.||.++||||++||++... +++|+|+||++|++|+++++++|+.++.
T Consensus 178 i~~s~g~~TG~aiNPARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa~lg~~~~~~~~~ 240 (241)
T COG0580 178 IGLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLYKLLLG 240 (241)
T ss_pred HHHHhcCCCCCccChHHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHHHHHHHHHHHHcc
Confidence 34567889999999999999999542 1248999999999999999999998765
No 26
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.15 E-value=2.6e-12 Score=97.94 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=52.9
Q ss_pred EEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCCcc
Q 042738 4 ANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQV 62 (107)
Q Consensus 4 ~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~~~ 62 (107)
++++..+++||+|+|||+++++++.++ +|.+.|+||++|++|+++++++++.++.++..
T Consensus 47 ~~~~~~~~~sga~~NPa~t~~~~~~~~~~~~~~~~y~~aq~~Ga~~~~~~~~~~~~~~~~ 106 (228)
T cd00333 47 VLVYAVGHISGGHINPAVTLALAVGGRFPLIRVIPYIIAQLLGAILGAALLYGLYYGLYL 106 (228)
T ss_pred HHHHHhccCCCCeEcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 455678899999999999999999988 79999999999999999999999998876543
No 27
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.11 E-value=1.2e-11 Score=100.00 Aligned_cols=58 Identities=22% Similarity=0.406 Sum_probs=53.1
Q ss_pred EEEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcC
Q 042738 2 AGANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59 (107)
Q Consensus 2 V~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p 59 (107)
|++++++++.+||+|+|||+||+..+.++ +|.++.+|.++|++||++|+.....+|+.
T Consensus 77 v~~gVyvag~iSGgHlNPAVS~a~~~~g~~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d 135 (316)
T KOG0224|consen 77 VMMGVYVAGRISGGHLNPAVSLAMCILGRLPWKKFPVYVLAQFIGAFLGAATVYGLYYD 135 (316)
T ss_pred HHHHHHhhccccccccCHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999 89999999999999999999887777743
No 28
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=98.87 E-value=1e-10 Score=88.13 Aligned_cols=56 Identities=29% Similarity=0.462 Sum_probs=49.7
Q ss_pred EEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCC
Q 042738 5 NVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPA 60 (107)
Q Consensus 5 ~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~ 60 (107)
.++..+++||+|+|||+|++..+.++ +|.+...|+++|++|+++|+.+.+.++.+.
T Consensus 61 ~i~~~~~iSGaH~NPaVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~ 117 (227)
T PF00230_consen 61 LIYAFGPISGAHFNPAVTLAFALTGRISWKKAIVYIIAQFLGAFLGALLVYALYPDS 117 (227)
T ss_dssp HHHHHHHHHTSS-SHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHH
T ss_pred hhhhhhhccccccccchhhheeeeeeecccceeeEEeeccccccccccchhhcccCc
Confidence 45567889999999999999999998 899999999999999999999998888764
No 29
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=98.82 E-value=5.3e-10 Score=87.60 Aligned_cols=59 Identities=29% Similarity=0.343 Sum_probs=53.5
Q ss_pred EEEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCC
Q 042738 2 AGANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPA 60 (107)
Q Consensus 2 V~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~ 60 (107)
++..++..+++||+|+|||+|++..+.++ ++.+...||++|++|+++|+.+.+.+..+.
T Consensus 55 v~v~i~~~g~iSGaH~NPAVT~a~~~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~ 114 (238)
T KOG0223|consen 55 VFVLVYSTGHISGAHFNPAVTLAFAVGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQ 114 (238)
T ss_pred HHHHHhhhccccccccCHHHHHHHHHhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcc
Confidence 34567788999999999999999999998 788999999999999999999999998875
No 30
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=98.75 E-value=2.2e-09 Score=87.07 Aligned_cols=57 Identities=30% Similarity=0.442 Sum_probs=48.5
Q ss_pred eeccccCCcCChHhHHHHHHhcC-------CC----CcceeehhhhhhHHHHHHHHHHHHhcCCcccc
Q 042738 8 ATGPFSGGSMNPACAFGSAVVAG-------SF----KNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQD 64 (107)
Q Consensus 8 ~~g~~SGasLNPArs~gpav~~~-------~w----~~~wvY~vap~lGAilaally~~l~~p~~~~~ 64 (107)
..+..+|..|||||+|||+++.. .+ .++|+.|++|++|+++++++|.++..-|.+++
T Consensus 214 s~G~N~GyaiNPARDlgPRlF~~~aGyG~~vF~~~~~~~WvPivgPl~Gai~G~~iY~~~Ig~h~~~~ 281 (316)
T KOG0224|consen 214 SLGYNTGYAINPARDLGPRLFTSIAGYGPEVFSAGHNWWWVPIVGPLIGAILGGWIYDFFIGFHIPRE 281 (316)
T ss_pred HhhcccCcccCcccccchHHHHHHHhcchhhcccCCceeeeeehhhhhhhhhhhhhheeeeeccCCCC
Confidence 44677999999999999999941 11 46789999999999999999999999888754
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=64.52 E-value=5.7 Score=32.70 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=22.6
Q ss_pred EeeeccccCCcCChHhHHHHHHhcCCC
Q 042738 6 VLATGPFSGGSMNPACAFGSAVVAGSF 32 (107)
Q Consensus 6 v~~~g~~SGasLNPArs~gpav~~~~w 32 (107)
++.++.-||||+-||.++...+....|
T Consensus 3 ivl~~gGTGGHv~pAlAl~~~l~~~g~ 29 (357)
T COG0707 3 IVLTAGGTGGHVFPALALAEELAKRGW 29 (357)
T ss_pred EEEEeCCCccchhHHHHHHHHHHhhCc
Confidence 345566799999999999999988766
No 32
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=57.92 E-value=6.4 Score=31.71 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=17.8
Q ss_pred eeccccCCcCChHhHHHHHHhc
Q 042738 8 ATGPFSGGSMNPACAFGSAVVA 29 (107)
Q Consensus 8 ~~g~~SGasLNPArs~gpav~~ 29 (107)
.++.=||||+.||.+++-.+-.
T Consensus 6 ~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 6 FTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred EEcCCcHHHHHHHHHHHHHHHh
Confidence 3444499999999999998874
No 33
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=35.36 E-value=28 Score=30.50 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=30.4
Q ss_pred cceeehhhhhhHHHHHHHHHHHHhcCCc-ccccccccc
Q 042738 34 NQAVYWVGPLFGAAVAGLVYDIVVFPAQ-VQDSIAGVS 70 (107)
Q Consensus 34 ~~wvY~vap~lGAilaally~~l~~p~~-~~~~~~~~~ 70 (107)
+.|-|++.+.+|.+++.+++.+...|+. ..++.++.+
T Consensus 187 Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~ 224 (493)
T KOG1330|consen 187 WRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGEN 224 (493)
T ss_pred eEEEEEeehHHHHHHHHHHHhhccCcccccccccccCC
Confidence 6788999999999999999999988886 555554443
No 34
>PRK09979 putative rho operon leader peptide; Provisional
Probab=34.73 E-value=11 Score=21.08 Aligned_cols=18 Identities=50% Similarity=0.898 Sum_probs=13.7
Q ss_pred ccccCCcCChHhHHHHHH
Q 042738 10 GPFSGGSMNPACAFGSAV 27 (107)
Q Consensus 10 g~~SGasLNPArs~gpav 27 (107)
-.++|.++||..-|..+.
T Consensus 4 eqisgsslnpscrfssay 21 (33)
T PRK09979 4 EQISGSSLNPSCRFSSAY 21 (33)
T ss_pred ccccCCcCCccccccccc
Confidence 357899999998776543
No 35
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=33.86 E-value=14 Score=27.09 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=0.0
Q ss_pred cceeehhhhhhHHHHHHHHHHHHhcCCcccccccccc
Q 042738 34 NQAVYWVGPLFGAAVAGLVYDIVVFPAQVQDSIAGVS 70 (107)
Q Consensus 34 ~~wvY~vap~lGAilaally~~l~~p~~~~~~~~~~~ 70 (107)
..|+-|++|++.-++++++...............+++
T Consensus 100 ~~~~lW~~P~~~l~~g~~~~~~~~rr~~~~~~~~~ls 136 (148)
T PF03918_consen 100 FTWLLWLGPFLLLLLGGALLFRRLRRWRRRAAQEELS 136 (148)
T ss_dssp -------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC
Confidence 5688899999999998877776665554333223344
No 36
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=32.38 E-value=17 Score=24.20 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=17.1
Q ss_pred cccCCcCChHhHHHHHHhcC
Q 042738 11 PFSGGSMNPACAFGSAVVAG 30 (107)
Q Consensus 11 ~~SGasLNPArs~gpav~~~ 30 (107)
.=|++|+||..+++-.+...
T Consensus 6 ~Gt~Ghv~P~lala~~L~~r 25 (139)
T PF03033_consen 6 GGTRGHVYPFLALARALRRR 25 (139)
T ss_dssp ESSHHHHHHHHHHHHHHHHT
T ss_pred cCChhHHHHHHHHHHHHhcc
Confidence 33889999999999999864
No 37
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=28.46 E-value=1e+02 Score=21.68 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=30.5
Q ss_pred CcceeehhhhhhHHHHHHHHHHHHh-----------cCCccccccccccCCCCCcchhhhh
Q 042738 33 KNQAVYWVGPLFGAAVAGLVYDIVV-----------FPAQVQDSIAGVSDGIGGTQRREVV 82 (107)
Q Consensus 33 ~~~wvY~vap~lGAilaally~~l~-----------~p~~~~~~~~~~~~~~~~~~~~~~~ 82 (107)
...|.|.+|-.+++++-+++..+.. ..|.+-++.++.+...|.+.+.|.+
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY~H~rL~e~e~~~~~~g~~~~p~~~ 74 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKCPVWYKYLASYRHHRLPETEAETYEDGFTENPEVG 74 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccccccCCcccccccccccCCCCCcc
Confidence 5789999999999998876654332 2333333444444444556666555
No 38
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=25.41 E-value=86 Score=21.99 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=35.7
Q ss_pred CCcCChHhHHHHHHhcCCCC---cceeehhhhhhHHHHHHHHHHHHhcCC
Q 042738 14 GGSMNPACAFGSAVVAGSFK---NQAVYWVGPLFGAAVAGLVYDIVVFPA 60 (107)
Q Consensus 14 GasLNPArs~gpav~~~~w~---~~wvY~vap~lGAilaally~~l~~p~ 60 (107)
|+.+.|-|.+---+..+..+ ...+|++.-++||-.+..+.+++-..|
T Consensus 53 GGTfd~~~~iE~g~~~G~~~~~~KQ~l~Il~Af~GA~~g~~lI~wl~~~~ 102 (102)
T PF14034_consen 53 GGTFDTFRSIEKGFFEGELSDIIKQLLYILSAFLGAHTGYILIRWLTGGH 102 (102)
T ss_pred hcCchHHHHHHhHhcCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCC
Confidence 56677777777777666443 456899999999999999998876543
No 39
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=20.70 E-value=2.4e+02 Score=18.61 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=10.5
Q ss_pred hhhhhHHHHHHHHHHHHhcCCcccc
Q 042738 40 VGPLFGAAVAGLVYDIVVFPAQVQD 64 (107)
Q Consensus 40 vap~lGAilaally~~l~~p~~~~~ 64 (107)
+.|++|.++ ....+..|..+.+
T Consensus 90 ~ip~i~~i~---~l~l~~~pg~~~~ 111 (120)
T PF05656_consen 90 LIPIIGIIV---LLYLLFLPGQPGP 111 (120)
T ss_pred HHHHHHHHH---HHHHHhcCCCCCC
Confidence 444444433 3334456665555
Done!