BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042739
(505 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 105/165 (63%), Gaps = 3/165 (1%)
Query: 14 NKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIETTDIS 73
KY+VFLSFRG DTR+ F S L L R+ I+ F DD+EL+ G SP L + IE + +
Sbjct: 7 TKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFA 66
Query: 74 IIIFSKGYASSKWCLNELVKTLDCKRTNGQIVIPVFYQIDPSDVRKQSESLEEAFLEH-E 132
+++ S+ YA+S WCL+ELV +D ++ V+P+FY ++P+ VR Q+ L E F +H
Sbjct: 67 VVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS 126
Query: 133 KNFPDKVQKWRAALTEASNLSGYDPTESRNEAELVEEIVADISKK 177
+ P+KV KWR ALT + LSG ++++LV++I +IS K
Sbjct: 127 REDPEKVLKWRQALTNFAQLSG--DCSGDDDSKLVDKIANEISNK 169
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 101/162 (62%), Gaps = 2/162 (1%)
Query: 15 KYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIETTDISI 74
+YEVFLSFRG DTR FT L +L R +I F DD+EL KG EI P L AI+ + I +
Sbjct: 35 EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 75 IIFSKGYASSKWCLNELVKTLDCKRTNG-QIVIPVFYQIDPSDVRKQSESLEEAFLEHEK 133
I S GYA SKWCL EL + + + + +I++P+FY +DPSDVR Q+ ++AF +H
Sbjct: 95 PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154
Query: 134 NFPDK-VQKWRAALTEASNLSGYDPTESRNEAELVEEIVADI 174
F + +Q W+ AL + +L G+ ++ + + +++ ADI
Sbjct: 155 KFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADI 196
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 31/232 (13%)
Query: 214 VGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREES----NKLGVIRVRDEVISQVL 269
V I+GM G GK+ +A+ S +G CF V S +K G++ + ++
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHS-LLEG-CFSGGVHWVSIGKQDKSGLLMKLQNLCMRLD 207
Query: 270 GENLKVGTLTIPQNIKKGLQRMKVL---------IVLDDVHDEFTQLESLAGVIDRFSPG 320
E + + +P NI++ R++VL ++LDDV D + V+ F
Sbjct: 208 QE--ESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------VLKAFDNQ 257
Query: 321 SRIIITTRDKRVLDKC-EVSNIFEVK-GLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVV 378
+I++TTRDK V D ++ V+ GL K E+ + N + DL + ++
Sbjct: 258 CQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEIL---SLFVNMKKEDLPAEAHSII 314
Query: 379 CYADGNPLALEVLGSSLYQNSIQQWEDKLHNLNLISEPNIYKVLKISYDELN 430
G+PL + ++G +L ++ +W L L I K Y+ L+
Sbjct: 315 KECKGSPLVVSLIG-ALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALD 365
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 43/219 (19%)
Query: 214 VGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREES----NKLGVIRVRDEVISQVL 269
V I GM G GK+ +A+ S +G CF V S +K G++ + +++
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHS-LLEG-CFPGGVHWVSVGKQDKSGLLMKLQNLCTRL- 206
Query: 270 GENLKVGTLTIPQNIKKGLQRMKVL---------IVLDDVHDEFTQLESLAGVIDRFSPG 320
+ + + +P NI++ R+++L ++LDDV D + V+ F
Sbjct: 207 -DQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW--------VLKAFDSQ 257
Query: 321 SRIIITTRDKRVLDKCE--------VSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQ 372
+I++TTRDK V D S++ + KGLE LF N + DL +
Sbjct: 258 CQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLE---ILSLFV------NMKKADLPE 308
Query: 373 LSQRVVCYADGNPLALEVLGSSLYQNSIQQWEDKLHNLN 411
+ ++ G+PL + ++G +L ++ +WE L L
Sbjct: 309 QAHSIIKECKGSPLVVSLIG-ALLRDFPNRWEYYLKQLQ 346
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 104/238 (43%), Gaps = 43/238 (18%)
Query: 214 VGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREES----NKLGVIRVRDEVISQVL 269
V I GM G GK+ +A+ S +G CF V S +K G++ + +++
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHS-LLEG-CFPGGVHWVSVGKQDKSGLLMKLQNLCTRL- 212
Query: 270 GENLKVGTLTIPQNIKKGLQRMKVL---------IVLDDVHDEFTQLESLAGVIDRFSPG 320
+ + + +P NI++ R+++L ++LDDV D + V+ F
Sbjct: 213 -DQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW--------VLKAFDSQ 263
Query: 321 SRIIITTRDKRVLDKCE--------VSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQ 372
+I++TTRDK V D S++ + KGLE LF N + DL +
Sbjct: 264 CQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLE---ILSLFV------NMKKADLPE 314
Query: 373 LSQRVVCYADGNPLALEVLGSSLYQNSIQQWEDKLHNLNLISEPNIYKVLKISYDELN 430
+ ++ G+PL + ++G +L ++ +WE L L I K Y+ L+
Sbjct: 315 QAHSIIKECKGSPLVVSLIG-ALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALD 371
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 101/232 (43%), Gaps = 31/232 (13%)
Query: 214 VGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREES----NKLGVIRVRDEVISQVL 269
V I+GM G GK+ +A+ S +G CF V S +K G++ + ++
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHS-LLEG-CFSGGVHWVSIGKQDKSGLLMKLQNLCMRLD 214
Query: 270 GENLKVGTLTIPQNIKKGLQRMKV---------LIVLDDVHDEFTQLESLAGVIDRFSPG 320
E + + +P NI++ R++V L++LDDV D + V+ F
Sbjct: 215 QE--ESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------VLKAFDNQ 264
Query: 321 SRIIITTRDKRVLDKC-EVSNIFEVK-GLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVV 378
+I++TT DK V D ++ V+ GL K E+ + N + DL + ++
Sbjct: 265 CQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEIL---SLFVNMKKEDLPAEAHSII 321
Query: 379 CYADGNPLALEVLGSSLYQNSIQQWEDKLHNLNLISEPNIYKVLKISYDELN 430
G+PL + ++G +L ++ +W L L I K Y+ L+
Sbjct: 322 KECKGSPLVVSLIG-ALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALD 372
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 10 LDAQNKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIET 69
L + +++F+S ED + F LA L + + DD L+ GD + ++ + +
Sbjct: 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGS 73
Query: 70 TDISIIIFSKGYASSKWCLNELVKTLDCKRTNGQIVIPVFYQIDPSDVRKQSESLEE 126
+ I++ S + +W EL + + ++P+++++ +V S ++ +
Sbjct: 74 SRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMAD 130
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 138 KVQKWRAALTEASN-LSGYDPTESRNEAELVEEIVADISKKLEDMSDSTDLDGFIGINSR 196
+V K AA +N L GY P E+ ++ + + + K++ D+ S DL +
Sbjct: 219 RVSKSYAARVGINNFLKGYLPAEN---MKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKI 275
Query: 197 IEEIKSLLCL----ESHDARIVGIWGMGGIGKTTIASVVFHQIS 236
I+++ + E+ + I+GI G GIGKTT A ++ +I+
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT 319
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 15/173 (8%)
Query: 88 LNELVKTLDCKRTNGQIVIPVFYQIDPSDVRKQSESLEEAFLEHEK----NFPDKVQKWR 143
L ++ L+ K G++V+ V + + VR + E + EK P V R
Sbjct: 25 LPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGR 84
Query: 144 AALTEASNLSGYDPTESRN--EAELVEEIVADISKKLEDMSDSTDLDGFIGINSRIEEIK 201
L N+ G +P + R +++L + I AD E + + L+ I ++
Sbjct: 85 ETLGRIINVIG-EPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGI-------KVV 136
Query: 202 SLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNK 254
LL + +I G++G G+GKT + + I++ G V E + +
Sbjct: 137 DLLAPYARGGKI-GLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTRE 188
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 15/173 (8%)
Query: 88 LNELVKTLDCKRTNGQIVIPVFYQIDPSDVRKQSESLEEAFLEHEK----NFPDKVQKWR 143
L ++ L+ K G++V+ V + + VR + E + EK P V R
Sbjct: 36 LPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGR 95
Query: 144 AALTEASNLSGYDPTESRN--EAELVEEIVADISKKLEDMSDSTDLDGFIGINSRIEEIK 201
L N+ G +P + R +++L + I AD E + + L+ I ++
Sbjct: 96 ETLGRIINVIG-EPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGI-------KVV 147
Query: 202 SLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNK 254
LL + +I G++G G+GKT + + I++ G V E + +
Sbjct: 148 DLLAPYARGGKI-GLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTRE 199
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 15/173 (8%)
Query: 88 LNELVKTLDCKRTNGQIVIPVFYQIDPSDVRKQSESLEEAFLEHEK----NFPDKVQKWR 143
L ++ L+ K G++V+ V + + VR + E + EK P V R
Sbjct: 25 LPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGR 84
Query: 144 AALTEASNLSGYDPTESRN--EAELVEEIVADISKKLEDMSDSTDLDGFIGINSRIEEIK 201
L N+ G +P + R +++L + I AD E + + L+ I ++
Sbjct: 85 ETLGRIINVIG-EPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGI-------KVV 136
Query: 202 SLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNK 254
LL + +I G++G G+GKT + + I++ G V E + +
Sbjct: 137 DLLAPYARGGKI-GLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTRE 188
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 15/173 (8%)
Query: 88 LNELVKTLDCKRTNGQIVIPVFYQIDPSDVRKQSESLEEAFLEHEK----NFPDKVQKWR 143
L ++ L+ K G++V+ V + + VR + E + EK P V R
Sbjct: 36 LPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGR 95
Query: 144 AALTEASNLSGYDPTESRN--EAELVEEIVADISKKLEDMSDSTDLDGFIGINSRIEEIK 201
L N+ G +P + R +++L + I AD E + + L+ I ++
Sbjct: 96 ETLGRIINVIG-EPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGI-------KVV 147
Query: 202 SLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNK 254
LL + +I G++G G+GKT + + I++ G V E + +
Sbjct: 148 DLLAPYARGGKI-GLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTRE 199
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 15/173 (8%)
Query: 88 LNELVKTLDCKRTNGQIVIPVFYQIDPSDVRKQSESLEEAFLEHEK----NFPDKVQKWR 143
L ++ L+ K G++V+ V + + VR + E + EK P V R
Sbjct: 30 LPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGR 89
Query: 144 AALTEASNLSGYDPTESRN--EAELVEEIVADISKKLEDMSDSTDLDGFIGINSRIEEIK 201
L N+ G +P + R +++L + I AD E + + L+ I ++
Sbjct: 90 ETLGRIINVIG-EPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGI-------KVV 141
Query: 202 SLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNK 254
LL + +I G++G G+GKT + + I++ G V E + +
Sbjct: 142 DLLAPYARGGKI-GLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTRE 193
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 15/173 (8%)
Query: 88 LNELVKTLDCKRTNGQIVIPVFYQIDPSDVRKQSESLEEAFLEHEK----NFPDKVQKWR 143
L ++ L+ K G++V+ V + + VR + E + EK P V R
Sbjct: 63 LPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGR 122
Query: 144 AALTEASNLSGYDPTESRN--EAELVEEIVADISKKLEDMSDSTDLDGFIGINSRIEEIK 201
L N+ G +P + R +++L + I AD E + + L+ I ++
Sbjct: 123 ETLGRIINVIG-EPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGI-------KVV 174
Query: 202 SLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNK 254
LL + +I G++G G+GKT + + I++ G V E + +
Sbjct: 175 DLLAPYARGGKI-GLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTRE 226
>pdb|1KNQ|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KNQ|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO1|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO1|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO5|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO5|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO8|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO8|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KOF|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KOF|B Chain B, Crystal Structure Of Gluconate Kinase
Length = 175
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 204 LCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVR 249
+ +HD I + G+ G GK+ +AS V HQ+ F F+ R
Sbjct: 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR 46
>pdb|1KO4|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO4|B Chain B, Crystal Structure Of Gluconate Kinase
Length = 175
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 204 LCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVR 249
+ +HD I + G+ G GK+ +AS V HQ+ F F+ R
Sbjct: 1 MSTTNHDHHIYVLXGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR 46
>pdb|1Z6Z|A Chain A, Crystal Structure Of Human Sepiapterin Reductase In
Complex With Nadp+
pdb|1Z6Z|B Chain B, Crystal Structure Of Human Sepiapterin Reductase In
Complex With Nadp+
pdb|1Z6Z|C Chain C, Crystal Structure Of Human Sepiapterin Reductase In
Complex With Nadp+
pdb|1Z6Z|D Chain D, Crystal Structure Of Human Sepiapterin Reductase In
Complex With Nadp+
pdb|1Z6Z|E Chain E, Crystal Structure Of Human Sepiapterin Reductase In
Complex With Nadp+
pdb|1Z6Z|F Chain F, Crystal Structure Of Human Sepiapterin Reductase In
Complex With Nadp+
Length = 282
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 171 VADISKKLEDMSDSTDLDGFIGINSRIEEIKSLLCLES 208
+ D+SK D+SDST ++ + +N + S+LCL S
Sbjct: 123 LGDVSKGFVDLSDSTQVNNYWALN-----LTSMLCLTS 155
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|E Chain E, Structure Of The Protein Phosphatase 2a Holoenzyme
Length = 449
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 27/126 (21%)
Query: 307 LESLAGVIDRFSPGSRIIITTRDKRVLDKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNR 366
L L ++D P + I R L KC S F+V R + NN
Sbjct: 305 LNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAE-----------RALYYWNNE 353
Query: 367 SHDLYQLSQRVVCYADGNPLALEVLGSSLYQNSIQQWEDKLHNLNLISEPNIYKVLKISY 426
Y +S +D L ++ SLY+NS W +H L IY LK+ +
Sbjct: 354 ----YIMS----LISDNAAKILPIMFPSLYRNSKTHWNKTIHGL-------IYNALKL-F 397
Query: 427 DELNSE 432
E+N +
Sbjct: 398 MEMNQK 403
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction
Length = 403
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 27/124 (21%)
Query: 307 LESLAGVIDRFSPGSRIIITTRDKRVLDKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNR 366
L L ++D P + I R L KC S F+V R + NN
Sbjct: 272 LNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAE-----------RALYYWNNE 320
Query: 367 SHDLYQLSQRVVCYADGNPLALEVLGSSLYQNSIQQWEDKLHNLNLISEPNIYKVLKISY 426
Y +S +D L ++ SLY+NS W +H L IY LK+ +
Sbjct: 321 ----YIMS----LISDNAAKILPIMFPSLYRNSKTHWNKTIHGL-------IYNALKL-F 364
Query: 427 DELN 430
E+N
Sbjct: 365 MEMN 368
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|E Chain E, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme
Length = 407
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 27/126 (21%)
Query: 307 LESLAGVIDRFSPGSRIIITTRDKRVLDKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNR 366
L L ++D P + I R L KC S F+V R + NN
Sbjct: 276 LNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAE-----------RALYYWNNE 324
Query: 367 SHDLYQLSQRVVCYADGNPLALEVLGSSLYQNSIQQWEDKLHNLNLISEPNIYKVLKISY 426
Y +S +D L ++ SLY+NS W +H L IY LK+ +
Sbjct: 325 ----YIMS----LISDNAAKILPIMFPSLYRNSKTHWNKTIHGL-------IYNALKL-F 368
Query: 427 DELNSE 432
E+N +
Sbjct: 369 MEMNQK 374
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 214 VGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNK 254
+G++G G+GKT + + H I++ G A V E + +
Sbjct: 154 IGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTRE 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,050,031
Number of Sequences: 62578
Number of extensions: 579131
Number of successful extensions: 1772
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1759
Number of HSP's gapped (non-prelim): 26
length of query: 505
length of database: 14,973,337
effective HSP length: 103
effective length of query: 402
effective length of database: 8,527,803
effective search space: 3428176806
effective search space used: 3428176806
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)