Query 042739
Match_columns 505
No_of_seqs 430 out of 2956
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:56:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 5.4E-79 1.2E-83 682.2 49.7 492 1-501 1-506 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 1.5E-38 3.4E-43 339.3 24.7 301 191-498 161-496 (889)
3 PLN03194 putative disease resi 100.0 1.2E-38 2.7E-43 270.3 15.7 160 7-180 18-179 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 4.4E-36 9.5E-41 289.6 17.0 261 193-458 1-278 (287)
5 smart00255 TIR Toll - interleu 99.8 1.1E-20 2.4E-25 161.5 11.9 134 15-150 1-138 (140)
6 PRK04841 transcriptional regul 99.8 4.2E-18 9.1E-23 190.2 27.1 298 185-502 11-337 (903)
7 PF01582 TIR: TIR domain; Int 99.8 1.2E-20 2.7E-25 160.8 4.9 129 18-147 1-140 (141)
8 PF13676 TIR_2: TIR domain; PD 99.7 3.8E-18 8.1E-23 137.0 3.6 87 18-111 1-87 (102)
9 COG2909 MalT ATP-dependent tra 99.7 1.3E-15 2.9E-20 156.0 21.8 298 185-502 16-343 (894)
10 COG3899 Predicted ATPase [Gene 99.7 1.7E-15 3.8E-20 163.5 16.9 306 190-500 2-389 (849)
11 PRK00411 cdc6 cell division co 99.6 1.1E-12 2.3E-17 132.4 25.0 282 185-477 27-357 (394)
12 TIGR00635 ruvB Holliday juncti 99.5 5.3E-13 1.2E-17 129.7 15.7 259 188-483 4-294 (305)
13 TIGR02928 orc1/cdc6 family rep 99.5 4.4E-11 9.5E-16 119.4 27.4 282 185-478 12-350 (365)
14 PRK00080 ruvB Holliday junctio 99.5 4.6E-13 9.9E-18 131.0 12.6 261 185-482 22-314 (328)
15 PF01637 Arch_ATPase: Archaeal 99.5 6.4E-13 1.4E-17 123.9 12.6 198 190-391 1-234 (234)
16 TIGR03015 pepcterm_ATPase puta 99.4 3.2E-11 7E-16 115.0 17.3 181 210-395 42-242 (269)
17 COG3903 Predicted ATPase [Gene 99.3 1.5E-12 3.1E-17 124.3 5.8 281 210-499 13-316 (414)
18 PF05729 NACHT: NACHT domain 99.2 8E-11 1.7E-15 103.4 11.1 143 212-360 1-163 (166)
19 KOG3678 SARM protein (with ste 99.2 8.2E-11 1.8E-15 112.4 10.7 93 12-110 609-709 (832)
20 COG2256 MGS1 ATPase related to 99.1 5E-09 1.1E-13 99.8 15.8 172 188-388 24-209 (436)
21 PRK06893 DNA replication initi 99.0 3.8E-09 8.3E-14 97.6 14.2 155 211-395 39-207 (229)
22 PRK07003 DNA polymerase III su 99.0 2.3E-08 5E-13 103.9 19.8 183 185-390 13-220 (830)
23 PRK13342 recombination factor 99.0 2.5E-08 5.5E-13 100.6 19.3 182 185-395 9-200 (413)
24 PF14516 AAA_35: AAA-like doma 98.9 5.2E-07 1.1E-11 88.2 25.4 282 185-493 8-329 (331)
25 PF05496 RuvB_N: Holliday junc 98.9 2.3E-08 5E-13 89.1 14.2 182 185-397 21-227 (233)
26 TIGR03420 DnaA_homol_Hda DnaA 98.9 2.2E-08 4.8E-13 92.8 14.7 177 187-395 14-205 (226)
27 PRK12402 replication factor C 98.9 7.5E-08 1.6E-12 95.0 19.2 203 186-393 13-228 (337)
28 PTZ00112 origin recognition co 98.9 1.1E-07 2.4E-12 99.5 20.5 279 185-478 752-1086(1164)
29 PRK07471 DNA polymerase III su 98.9 2.2E-07 4.8E-12 91.4 21.7 197 185-392 16-239 (365)
30 PLN03025 replication factor C 98.9 1.2E-07 2.6E-12 92.4 18.9 187 185-391 10-200 (319)
31 PRK14961 DNA polymerase III su 98.9 2.5E-07 5.4E-12 91.7 21.2 184 185-391 13-220 (363)
32 COG1474 CDC6 Cdc6-related prot 98.9 2.8E-07 6.2E-12 90.4 21.2 280 185-478 14-334 (366)
33 PRK14949 DNA polymerase III su 98.9 1.8E-07 3.8E-12 99.3 20.4 189 185-391 13-220 (944)
34 PRK14963 DNA polymerase III su 98.9 1.5E-07 3.2E-12 96.4 19.3 190 185-389 11-215 (504)
35 PRK00440 rfc replication facto 98.9 1.6E-07 3.4E-12 92.0 18.9 187 186-392 15-204 (319)
36 PF13191 AAA_16: AAA ATPase do 98.9 3.8E-09 8.3E-14 94.6 6.8 50 189-238 1-51 (185)
37 PRK08903 DnaA regulatory inact 98.9 2.6E-08 5.7E-13 92.3 12.6 176 185-395 15-203 (227)
38 PRK08727 hypothetical protein; 98.9 7.2E-08 1.6E-12 89.4 15.3 176 185-392 16-205 (233)
39 PRK12323 DNA polymerase III su 98.9 1.7E-07 3.7E-12 96.3 19.0 199 185-391 13-225 (700)
40 PF00308 Bac_DnaA: Bacterial d 98.9 6.2E-08 1.3E-12 88.7 14.5 187 188-395 8-212 (219)
41 PRK08084 DNA replication initi 98.9 7.2E-08 1.6E-12 89.5 14.9 176 188-395 22-213 (235)
42 PRK14960 DNA polymerase III su 98.8 1.8E-07 3.8E-12 96.4 18.4 182 185-389 12-217 (702)
43 PTZ00202 tuzin; Provisional 98.8 6.9E-07 1.5E-11 87.0 21.2 164 185-360 259-434 (550)
44 PRK05642 DNA replication initi 98.8 9.8E-08 2.1E-12 88.5 15.1 155 211-395 45-212 (234)
45 PRK04195 replication factor C 98.8 2.3E-07 5E-12 95.6 18.3 185 185-395 11-206 (482)
46 PRK05564 DNA polymerase III su 98.8 5.5E-07 1.2E-11 87.6 19.8 178 188-390 4-189 (313)
47 PRK09112 DNA polymerase III su 98.8 3.4E-07 7.4E-12 89.5 17.9 196 185-392 20-241 (351)
48 PRK07940 DNA polymerase III su 98.8 2.4E-07 5.3E-12 91.8 17.0 176 188-389 5-211 (394)
49 PRK08691 DNA polymerase III su 98.8 2E-07 4.3E-12 96.8 16.5 196 185-392 13-221 (709)
50 PRK14087 dnaA chromosomal repl 98.8 1.1E-06 2.4E-11 89.2 21.3 168 211-395 141-323 (450)
51 PRK14956 DNA polymerase III su 98.8 7.5E-07 1.6E-11 89.2 19.2 192 185-388 15-219 (484)
52 PRK14951 DNA polymerase III su 98.7 9.2E-07 2E-11 92.1 19.7 197 185-391 13-225 (618)
53 PRK14964 DNA polymerase III su 98.7 7.4E-07 1.6E-11 90.2 18.4 182 185-389 10-215 (491)
54 TIGR00678 holB DNA polymerase 98.7 6.3E-07 1.4E-11 80.4 15.9 160 199-386 3-186 (188)
55 PRK07994 DNA polymerase III su 98.7 2.5E-07 5.5E-12 96.4 15.1 196 185-392 13-221 (647)
56 TIGR02397 dnaX_nterm DNA polym 98.7 1.4E-06 3.1E-11 86.6 19.6 186 185-393 11-220 (355)
57 PRK14958 DNA polymerase III su 98.7 7.2E-07 1.6E-11 91.7 17.6 184 185-391 13-220 (509)
58 PF13401 AAA_22: AAA domain; P 98.7 3.8E-08 8.2E-13 82.7 7.0 114 210-329 3-125 (131)
59 PRK06645 DNA polymerase III su 98.7 1.1E-06 2.5E-11 89.6 18.9 190 185-389 18-227 (507)
60 PRK14962 DNA polymerase III su 98.7 1.7E-06 3.6E-11 88.1 19.9 186 185-393 11-221 (472)
61 PRK14957 DNA polymerase III su 98.7 5.6E-07 1.2E-11 92.4 16.6 179 185-386 13-215 (546)
62 PRK09087 hypothetical protein; 98.7 7.5E-07 1.6E-11 81.9 15.5 144 211-395 44-199 (226)
63 PF13173 AAA_14: AAA domain 98.7 1.1E-07 2.4E-12 79.4 9.0 119 211-351 2-126 (128)
64 PRK13341 recombination factor 98.7 2.4E-06 5.3E-11 91.0 21.1 178 185-392 25-218 (725)
65 PRK00149 dnaA chromosomal repl 98.7 2.5E-06 5.4E-11 87.3 20.4 227 211-458 148-414 (450)
66 PRK07764 DNA polymerase III su 98.7 1.9E-06 4.1E-11 93.0 19.8 187 185-388 12-218 (824)
67 PRK05896 DNA polymerase III su 98.7 1.8E-06 4E-11 88.9 18.8 192 185-388 13-217 (605)
68 COG2255 RuvB Holliday junction 98.6 2.9E-06 6.3E-11 77.5 17.2 261 185-483 23-316 (332)
69 PRK14955 DNA polymerase III su 98.6 1.8E-06 4E-11 86.6 17.3 201 185-391 13-228 (397)
70 PRK14970 DNA polymerase III su 98.6 6.1E-06 1.3E-10 82.3 20.9 184 185-390 14-208 (367)
71 KOG2028 ATPase related to the 98.6 4.9E-07 1.1E-11 84.9 11.7 175 187-386 137-331 (554)
72 PRK09111 DNA polymerase III su 98.6 3.5E-06 7.6E-11 88.0 19.4 198 185-392 21-234 (598)
73 PRK14086 dnaA chromosomal repl 98.6 7.9E-06 1.7E-10 84.3 21.2 164 211-395 314-492 (617)
74 PRK14088 dnaA chromosomal repl 98.6 1.7E-06 3.8E-11 87.6 16.2 166 211-395 130-309 (440)
75 cd00009 AAA The AAA+ (ATPases 98.6 6.1E-07 1.3E-11 76.6 11.1 45 191-237 1-45 (151)
76 PRK14950 DNA polymerase III su 98.6 4.2E-06 9.2E-11 88.1 19.5 198 185-393 13-223 (585)
77 PRK14952 DNA polymerase III su 98.6 6E-06 1.3E-10 85.8 20.2 190 185-386 10-214 (584)
78 PRK14969 DNA polymerase III su 98.6 1.1E-06 2.4E-11 90.8 14.5 181 185-388 13-217 (527)
79 TIGR01242 26Sp45 26S proteasom 98.6 7.7E-07 1.7E-11 88.5 12.7 175 185-385 119-328 (364)
80 PRK14954 DNA polymerase III su 98.5 6.8E-06 1.5E-10 86.0 19.6 199 185-389 13-226 (620)
81 PRK14953 DNA polymerase III su 98.5 1.4E-05 2.9E-10 81.9 21.5 194 185-392 13-221 (486)
82 TIGR00362 DnaA chromosomal rep 98.5 2.1E-06 4.5E-11 86.8 15.3 164 211-395 136-314 (405)
83 PRK06620 hypothetical protein; 98.5 2.2E-06 4.8E-11 78.1 14.0 139 212-394 45-192 (214)
84 PRK14959 DNA polymerase III su 98.5 5.1E-06 1.1E-10 86.1 18.0 198 185-394 13-224 (624)
85 PRK08451 DNA polymerase III su 98.5 1.1E-05 2.3E-10 82.7 20.0 188 185-392 11-219 (535)
86 TIGR03345 VI_ClpV1 type VI sec 98.5 2.6E-06 5.5E-11 93.1 16.5 193 166-384 169-389 (852)
87 TIGR02639 ClpA ATP-dependent C 98.5 1.8E-06 4E-11 93.4 14.7 171 166-360 164-358 (731)
88 PRK14971 DNA polymerase III su 98.5 2.6E-05 5.5E-10 82.2 21.7 183 185-390 14-221 (614)
89 PRK07133 DNA polymerase III su 98.4 6.6E-06 1.4E-10 86.6 16.0 188 185-389 15-217 (725)
90 PRK14948 DNA polymerase III su 98.4 3.2E-05 6.9E-10 81.4 21.0 199 185-393 13-224 (620)
91 CHL00095 clpC Clp protease ATP 98.4 1.8E-06 3.9E-11 94.6 12.0 152 188-359 179-353 (821)
92 PRK05563 DNA polymerase III su 98.4 2.6E-05 5.7E-10 81.4 20.0 192 185-389 13-218 (559)
93 PRK06647 DNA polymerase III su 98.4 2.1E-05 4.5E-10 81.9 19.1 190 185-391 13-220 (563)
94 PRK05707 DNA polymerase III su 98.4 1.4E-05 3E-10 77.7 16.6 94 292-391 107-203 (328)
95 PRK06305 DNA polymerase III su 98.4 1.2E-05 2.7E-10 81.6 16.9 185 185-390 14-221 (451)
96 PF08937 DUF1863: MTH538 TIR-l 98.4 7.7E-07 1.7E-11 74.4 6.8 90 16-110 1-107 (130)
97 PRK12422 chromosomal replicati 98.4 7.1E-06 1.5E-10 83.1 14.4 157 211-388 141-310 (445)
98 PRK03992 proteasome-activating 98.4 5E-06 1.1E-10 83.1 13.1 173 186-384 129-336 (389)
99 TIGR02881 spore_V_K stage V sp 98.3 5.5E-06 1.2E-10 78.4 12.0 153 189-360 7-191 (261)
100 PRK14965 DNA polymerase III su 98.3 2.7E-05 5.9E-10 81.7 18.2 185 185-386 13-215 (576)
101 PF10443 RNA12: RNA12 protein; 98.3 0.00023 4.9E-09 69.9 23.0 105 292-397 149-284 (431)
102 PHA02544 44 clamp loader, smal 98.3 9.4E-06 2E-10 79.3 13.8 150 185-358 18-171 (316)
103 COG3267 ExeA Type II secretory 98.3 4.9E-05 1.1E-09 68.7 16.5 181 209-394 49-248 (269)
104 PRK07399 DNA polymerase III su 98.3 9.4E-05 2E-09 71.5 19.8 195 188-393 4-223 (314)
105 COG0593 DnaA ATPase involved i 98.3 1.3E-05 2.9E-10 78.7 13.9 162 210-391 112-286 (408)
106 KOG0989 Replication factor C, 98.3 9.2E-06 2E-10 75.1 11.3 181 185-386 33-225 (346)
107 TIGR03346 chaperone_ClpB ATP-d 98.3 4.4E-05 9.6E-10 84.1 18.6 155 186-360 171-349 (852)
108 PRK10865 protein disaggregatio 98.3 2.8E-05 6.1E-10 85.3 16.8 169 166-360 160-354 (857)
109 TIGR03689 pup_AAA proteasome A 98.2 1.7E-05 3.6E-10 80.9 13.8 160 186-360 180-378 (512)
110 PF08357 SEFIR: SEFIR domain; 98.2 1.8E-06 3.8E-11 74.4 5.5 65 17-81 2-70 (150)
111 PRK08769 DNA polymerase III su 98.2 0.00011 2.4E-09 70.8 17.1 95 290-392 112-209 (319)
112 TIGR02903 spore_lon_C ATP-depe 98.2 2E-05 4.3E-10 83.3 12.8 49 185-235 151-199 (615)
113 PF05621 TniB: Bacterial TniB 98.2 7.1E-05 1.5E-09 70.2 14.8 195 195-392 44-262 (302)
114 PRK11034 clpA ATP-dependent Cl 98.1 2.1E-05 4.6E-10 84.4 12.6 152 188-360 186-362 (758)
115 TIGR02880 cbbX_cfxQ probable R 98.1 3.9E-05 8.4E-10 73.3 13.0 130 212-360 59-208 (284)
116 PRK06871 DNA polymerase III su 98.1 0.00018 3.8E-09 69.5 17.3 175 197-388 11-200 (325)
117 CHL00195 ycf46 Ycf46; Provisio 98.1 4E-05 8.7E-10 78.2 13.3 176 187-385 227-429 (489)
118 PRK07993 DNA polymerase III su 98.1 0.00016 3.4E-09 70.5 16.4 175 197-388 11-201 (334)
119 PTZ00454 26S protease regulato 98.1 6.6E-05 1.4E-09 74.9 13.9 175 185-385 142-351 (398)
120 PF05673 DUF815: Protein of un 98.1 0.00047 1E-08 62.8 17.7 55 185-239 24-80 (249)
121 PF00004 AAA: ATPase family as 98.1 3.3E-05 7.2E-10 64.6 9.7 23 214-236 1-23 (132)
122 COG1373 Predicted ATPase (AAA+ 98.0 0.00065 1.4E-08 68.1 20.0 236 195-477 24-269 (398)
123 CHL00176 ftsH cell division pr 98.0 7.1E-05 1.5E-09 78.9 13.3 182 186-392 181-396 (638)
124 PRK08058 DNA polymerase III su 98.0 0.00018 3.8E-09 70.4 15.2 160 190-359 7-181 (329)
125 CHL00181 cbbX CbbX; Provisiona 98.0 0.00034 7.3E-09 66.8 16.1 131 211-360 59-209 (287)
126 PTZ00361 26 proteosome regulat 98.0 3.4E-05 7.3E-10 77.5 9.3 172 188-385 183-389 (438)
127 PRK08181 transposase; Validate 97.9 5.1E-05 1.1E-09 71.3 9.4 100 212-330 107-209 (269)
128 PRK06090 DNA polymerase III su 97.9 0.0012 2.5E-08 63.7 18.7 91 291-391 108-201 (319)
129 TIGR01241 FtsH_fam ATP-depende 97.9 0.0002 4.4E-09 74.3 14.5 183 185-392 52-268 (495)
130 PRK06964 DNA polymerase III su 97.9 0.0011 2.4E-08 64.5 18.6 92 290-391 131-225 (342)
131 TIGR02640 gas_vesic_GvpN gas v 97.9 0.0003 6.5E-09 66.5 14.0 25 212-236 22-46 (262)
132 PRK08116 hypothetical protein; 97.9 0.0001 2.2E-09 69.7 10.7 103 212-330 115-221 (268)
133 KOG2543 Origin recognition com 97.9 0.0006 1.3E-08 65.2 15.4 199 187-394 5-229 (438)
134 PRK10536 hypothetical protein; 97.9 0.00013 2.9E-09 67.1 10.6 138 186-330 53-213 (262)
135 cd01128 rho_factor Transcripti 97.9 2.6E-05 5.6E-10 72.5 6.1 90 210-301 15-113 (249)
136 COG2812 DnaX DNA polymerase II 97.9 0.00042 9E-09 70.4 15.0 189 185-386 13-215 (515)
137 TIGR01243 CDC48 AAA family ATP 97.8 0.00012 2.5E-09 79.8 11.5 174 186-386 176-382 (733)
138 TIGR00602 rad24 checkpoint pro 97.8 0.00039 8.4E-09 73.0 14.7 52 185-236 81-135 (637)
139 COG1222 RPT1 ATP-dependent 26S 97.8 0.00045 9.7E-09 65.6 13.4 172 190-387 153-359 (406)
140 smart00382 AAA ATPases associa 97.8 0.0001 2.2E-09 62.1 8.6 28 212-239 3-30 (148)
141 COG0542 clpA ATP-binding subun 97.8 0.00067 1.5E-08 71.8 16.0 155 186-360 168-346 (786)
142 PRK09376 rho transcription ter 97.8 3.1E-05 6.6E-10 75.3 5.7 90 210-301 168-266 (416)
143 TIGR03346 chaperone_ClpB ATP-d 97.8 0.0012 2.6E-08 73.0 18.5 118 188-314 565-691 (852)
144 PRK12377 putative replication 97.8 0.00015 3.2E-09 67.3 9.6 36 211-246 101-136 (248)
145 PF01695 IstB_IS21: IstB-like 97.8 3.7E-05 7.9E-10 67.9 5.0 36 211-246 47-82 (178)
146 PF13177 DNA_pol3_delta2: DNA 97.8 0.00046 9.9E-09 60.0 11.8 139 192-348 1-162 (162)
147 TIGR01243 CDC48 AAA family ATP 97.7 0.00038 8.2E-09 75.8 13.8 180 187-392 452-665 (733)
148 KOG2227 Pre-initiation complex 97.7 0.00079 1.7E-08 66.1 14.3 205 185-395 147-372 (529)
149 TIGR02639 ClpA ATP-dependent C 97.7 0.00044 9.6E-09 75.1 14.2 115 188-314 454-577 (731)
150 PRK09183 transposase/IS protei 97.7 0.00011 2.4E-09 69.1 8.1 27 211-237 102-128 (259)
151 COG0466 Lon ATP-dependent Lon 97.7 0.00014 3E-09 74.9 8.8 158 189-360 324-508 (782)
152 KOG2228 Origin recognition com 97.7 0.0011 2.5E-08 62.3 13.8 172 188-360 24-219 (408)
153 PRK06526 transposase; Provisio 97.7 9.9E-05 2.1E-09 69.0 6.8 28 211-238 98-125 (254)
154 KOG0735 AAA+-type ATPase [Post 97.7 0.00091 2E-08 68.8 13.8 162 211-392 431-617 (952)
155 TIGR00767 rho transcription te 97.7 9E-05 1.9E-09 72.5 6.4 90 210-301 167-265 (415)
156 PRK06921 hypothetical protein; 97.6 0.00011 2.4E-09 69.3 6.9 36 211-246 117-153 (266)
157 TIGR01817 nifA Nif-specific re 97.6 0.0025 5.4E-08 67.0 17.7 52 185-236 193-244 (534)
158 KOG0741 AAA+-type ATPase [Post 97.6 0.00054 1.2E-08 68.0 11.6 131 209-360 536-686 (744)
159 PRK10865 protein disaggregatio 97.6 0.00094 2E-08 73.6 14.9 118 188-314 568-694 (857)
160 KOG0991 Replication factor C, 97.6 0.001 2.3E-08 59.2 12.2 50 185-236 24-73 (333)
161 PLN00020 ribulose bisphosphate 97.6 0.0011 2.3E-08 64.0 13.2 30 209-238 146-175 (413)
162 PRK11608 pspF phage shock prot 97.6 0.0026 5.5E-08 62.2 16.3 47 188-234 6-52 (326)
163 PRK07952 DNA replication prote 97.6 0.00037 8E-09 64.6 9.6 49 197-245 85-133 (244)
164 PRK04132 replication factor C 97.6 0.003 6.4E-08 68.4 17.5 158 216-392 569-732 (846)
165 PRK13531 regulatory ATPase Rav 97.6 0.00036 7.9E-09 70.1 10.0 46 188-237 20-65 (498)
166 PRK08699 DNA polymerase III su 97.6 0.0013 2.7E-08 64.0 13.4 87 292-388 114-203 (325)
167 KOG0733 Nuclear AAA ATPase (VC 97.6 0.00084 1.8E-08 67.9 11.9 174 186-384 188-395 (802)
168 COG0470 HolB ATPase involved i 97.6 0.0038 8.3E-08 61.1 16.9 146 190-351 3-172 (325)
169 COG0542 clpA ATP-binding subun 97.6 0.00047 1E-08 73.0 10.5 119 188-315 491-618 (786)
170 PRK08939 primosomal protein Dn 97.5 0.0006 1.3E-08 65.6 10.4 55 192-246 135-191 (306)
171 TIGR02974 phageshock_pspF psp 97.5 0.0016 3.6E-08 63.5 13.4 46 190-235 1-46 (329)
172 COG2607 Predicted ATPase (AAA+ 97.5 0.0024 5.2E-08 57.4 12.9 57 185-241 57-115 (287)
173 KOG2004 Mitochondrial ATP-depe 97.5 0.0004 8.7E-09 71.4 9.1 52 189-240 412-467 (906)
174 PRK06835 DNA replication prote 97.5 0.00039 8.5E-09 67.4 8.6 35 212-246 184-218 (329)
175 TIGR03345 VI_ClpV1 type VI sec 97.5 0.00046 9.9E-09 75.8 10.0 50 188-237 566-622 (852)
176 PF02562 PhoH: PhoH-like prote 97.5 0.00045 9.8E-09 61.8 8.2 124 192-329 4-155 (205)
177 CHL00095 clpC Clp protease ATP 97.5 0.00062 1.3E-08 74.9 10.9 119 188-315 509-636 (821)
178 PF00158 Sigma54_activat: Sigm 97.5 0.00092 2E-08 58.4 9.5 46 190-235 1-46 (168)
179 PRK05022 anaerobic nitric oxid 97.4 0.006 1.3E-07 63.5 17.1 51 186-236 185-235 (509)
180 COG1484 DnaC DNA replication p 97.4 0.00062 1.3E-08 63.8 8.8 37 210-246 104-140 (254)
181 PF14532 Sigma54_activ_2: Sigm 97.4 0.00027 5.9E-09 59.7 5.4 107 191-330 1-110 (138)
182 PRK15429 formate hydrogenlyase 97.4 0.0076 1.7E-07 65.3 17.7 49 187-235 375-423 (686)
183 TIGR02902 spore_lonB ATP-depen 97.4 0.0024 5.2E-08 66.6 13.1 46 187-234 64-109 (531)
184 PF07728 AAA_5: AAA domain (dy 97.4 0.0001 2.2E-09 62.4 2.3 22 214-235 2-23 (139)
185 PRK10787 DNA-binding ATP-depen 97.4 0.0068 1.5E-07 65.9 16.7 51 189-239 323-377 (784)
186 PRK11331 5-methylcytosine-spec 97.3 0.00031 6.7E-09 70.0 5.8 46 188-237 175-220 (459)
187 PRK11034 clpA ATP-dependent Cl 97.3 0.00086 1.9E-08 72.3 9.5 49 188-236 458-513 (758)
188 PF10236 DAP3: Mitochondrial r 97.3 0.0067 1.4E-07 58.7 14.7 49 341-389 258-307 (309)
189 KOG1514 Origin recognition com 97.3 0.0093 2E-07 61.7 15.7 200 185-393 393-623 (767)
190 PRK04296 thymidine kinase; Pro 97.3 0.00047 1E-08 61.7 5.6 111 212-331 3-117 (190)
191 cd01120 RecA-like_NTPases RecA 97.3 0.0016 3.4E-08 56.5 8.9 33 214-246 2-34 (165)
192 TIGR00763 lon ATP-dependent pr 97.3 0.0035 7.6E-08 68.6 13.4 51 189-239 321-375 (775)
193 cd01394 radB RadB. The archaea 97.2 0.00069 1.5E-08 62.2 6.7 49 198-246 6-54 (218)
194 PRK12608 transcription termina 97.2 0.00081 1.8E-08 65.5 7.3 99 199-300 122-229 (380)
195 PRK08118 topology modulation p 97.2 0.00068 1.5E-08 59.2 6.1 24 213-236 3-26 (167)
196 KOG0744 AAA+-type ATPase [Post 97.2 0.001 2.2E-08 62.2 7.4 36 211-246 177-216 (423)
197 PF04665 Pox_A32: Poxvirus A32 97.2 0.00055 1.2E-08 62.7 5.6 35 212-246 14-48 (241)
198 PRK09361 radB DNA repair and r 97.2 0.0012 2.7E-08 60.9 8.1 48 199-246 11-58 (225)
199 COG1223 Predicted ATPase (AAA+ 97.2 0.0016 3.4E-08 59.1 8.2 172 188-384 121-318 (368)
200 cd01131 PilT Pilus retraction 97.2 0.00088 1.9E-08 60.4 6.7 107 212-330 2-109 (198)
201 TIGR02237 recomb_radB DNA repa 97.2 0.001 2.2E-08 60.7 7.2 44 203-246 4-47 (209)
202 PF03215 Rad17: Rad17 cell cyc 97.2 0.0044 9.6E-08 63.9 12.4 49 188-236 19-70 (519)
203 PF13207 AAA_17: AAA domain; P 97.2 0.00028 6E-09 58.1 3.0 23 213-235 1-23 (121)
204 smart00763 AAA_PrkA PrkA AAA d 97.2 0.00036 7.8E-09 67.6 4.1 49 189-237 52-104 (361)
205 PRK00771 signal recognition pa 97.2 0.014 3E-07 59.0 15.5 29 210-238 94-122 (437)
206 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0024 5.2E-08 64.7 9.8 129 211-361 545-693 (802)
207 KOG0730 AAA+-type ATPase [Post 97.1 0.0049 1.1E-07 63.2 11.8 151 209-385 466-637 (693)
208 COG1066 Sms Predicted ATP-depe 97.1 0.0013 2.7E-08 63.8 7.2 97 197-301 79-178 (456)
209 COG1618 Predicted nucleotide k 97.1 0.00047 1E-08 57.9 3.7 30 212-241 6-36 (179)
210 PRK10820 DNA-binding transcrip 97.1 0.018 3.9E-07 60.1 16.2 50 185-234 201-250 (520)
211 PRK06696 uridine kinase; Valid 97.1 0.00068 1.5E-08 62.5 5.1 46 192-237 2-48 (223)
212 PF00448 SRP54: SRP54-type pro 97.1 0.0008 1.7E-08 60.3 4.9 56 211-269 1-56 (196)
213 KOG1970 Checkpoint RAD17-RFC c 97.1 0.0061 1.3E-07 61.2 11.3 44 193-236 87-135 (634)
214 PHA00729 NTP-binding motif con 97.0 0.002 4.3E-08 58.4 7.3 27 210-236 16-42 (226)
215 PRK07667 uridine kinase; Provi 97.0 0.0012 2.7E-08 59.2 5.9 41 197-237 3-43 (193)
216 KOG0731 AAA+-type ATPase conta 97.0 0.027 5.8E-07 59.7 16.2 179 186-388 309-521 (774)
217 cd01121 Sms Sms (bacterial rad 97.0 0.0016 3.4E-08 64.4 6.9 49 198-246 69-117 (372)
218 PRK14974 cell division protein 97.0 0.024 5.1E-07 55.2 14.5 29 210-238 139-167 (336)
219 cd01393 recA_like RecA is a b 97.0 0.0042 9.2E-08 57.3 9.0 47 200-246 8-60 (226)
220 cd01133 F1-ATPase_beta F1 ATP 96.9 0.0031 6.7E-08 59.1 7.8 55 210-266 68-122 (274)
221 PF13604 AAA_30: AAA domain; P 96.9 0.0056 1.2E-07 55.1 9.3 40 196-238 6-45 (196)
222 PRK06067 flagellar accessory p 96.9 0.002 4.3E-08 59.9 6.5 48 199-246 13-60 (234)
223 PTZ00494 tuzin-like protein; P 96.9 0.066 1.4E-06 53.0 16.7 165 185-360 368-544 (664)
224 TIGR01420 pilT_fam pilus retra 96.9 0.0028 6.2E-08 62.3 7.8 92 211-311 122-214 (343)
225 PRK11889 flhF flagellar biosyn 96.9 0.0071 1.5E-07 59.3 10.3 29 210-238 240-268 (436)
226 PRK10733 hflB ATP-dependent me 96.9 0.0061 1.3E-07 65.2 10.8 128 212-361 186-336 (644)
227 PRK07261 topology modulation p 96.9 0.003 6.6E-08 55.4 7.2 23 213-235 2-24 (171)
228 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.0024 5.2E-08 56.8 6.5 23 213-235 1-23 (183)
229 KOG2035 Replication factor C, 96.9 0.0069 1.5E-07 55.6 9.2 184 188-386 13-223 (351)
230 PRK10923 glnG nitrogen regulat 96.9 0.033 7.2E-07 57.6 15.7 48 188-235 138-185 (469)
231 PRK11388 DNA-binding transcrip 96.9 0.04 8.8E-07 59.3 16.8 50 186-235 323-372 (638)
232 cd00561 CobA_CobO_BtuR ATP:cor 96.9 0.0062 1.4E-07 52.2 8.4 117 212-330 3-138 (159)
233 cd00544 CobU Adenosylcobinamid 96.9 0.0015 3.2E-08 57.1 4.7 21 214-234 2-22 (169)
234 PRK14722 flhF flagellar biosyn 96.8 0.013 2.8E-07 57.7 11.5 29 210-238 136-164 (374)
235 cd01123 Rad51_DMC1_radA Rad51_ 96.8 0.0044 9.5E-08 57.6 7.9 47 200-246 8-60 (235)
236 KOG1969 DNA replication checkp 96.8 0.0041 8.9E-08 64.4 8.0 28 208-235 323-350 (877)
237 COG0464 SpoVK ATPases of the A 96.8 0.0091 2E-07 62.2 10.8 152 209-383 274-445 (494)
238 PF01583 APS_kinase: Adenylyls 96.8 0.0017 3.8E-08 55.3 4.3 36 211-246 2-37 (156)
239 cd01129 PulE-GspE PulE/GspE Th 96.7 0.0069 1.5E-07 57.2 8.6 102 196-312 68-169 (264)
240 PF03969 AFG1_ATPase: AFG1-lik 96.7 0.0032 6.9E-08 62.0 6.3 103 210-330 61-167 (362)
241 PRK11823 DNA repair protein Ra 96.7 0.0042 9.1E-08 63.2 7.2 49 198-246 67-115 (446)
242 KOG0743 AAA+-type ATPase [Post 96.7 0.034 7.3E-07 54.9 13.0 151 211-395 235-413 (457)
243 COG4088 Predicted nucleotide k 96.7 0.006 1.3E-07 53.6 7.0 28 212-239 2-29 (261)
244 KOG3928 Mitochondrial ribosome 96.7 0.03 6.6E-07 54.4 12.4 58 338-395 402-460 (461)
245 TIGR00416 sms DNA repair prote 96.7 0.004 8.6E-08 63.5 7.0 50 197-246 80-129 (454)
246 PRK15455 PrkA family serine pr 96.7 0.0021 4.6E-08 65.7 4.8 51 187-237 75-129 (644)
247 PRK07132 DNA polymerase III su 96.7 0.6 1.3E-05 44.8 21.2 167 197-390 5-184 (299)
248 PRK00279 adk adenylate kinase; 96.7 0.0039 8.5E-08 57.1 6.2 23 213-235 2-24 (215)
249 PF10137 TIR-like: Predicted n 96.6 0.0068 1.5E-07 49.6 6.5 61 17-80 1-61 (125)
250 PRK05800 cobU adenosylcobinami 96.6 0.0025 5.4E-08 55.8 4.2 23 213-235 3-25 (170)
251 TIGR02329 propionate_PrpR prop 96.6 0.083 1.8E-06 54.9 16.0 49 187-235 211-259 (526)
252 KOG0734 AAA+-type ATPase conta 96.6 0.024 5.1E-07 56.9 11.2 46 190-235 306-361 (752)
253 TIGR00150 HI0065_YjeE ATPase, 96.6 0.0032 7E-08 52.2 4.6 42 195-236 6-47 (133)
254 PF00406 ADK: Adenylate kinase 96.6 0.0026 5.7E-08 54.6 4.3 20 216-235 1-20 (151)
255 PRK10867 signal recognition pa 96.6 0.071 1.5E-06 53.8 14.9 29 210-238 99-127 (433)
256 PF03308 ArgK: ArgK protein; 96.6 0.0042 9.1E-08 57.0 5.6 42 197-238 15-56 (266)
257 TIGR00064 ftsY signal recognit 96.6 0.0079 1.7E-07 57.0 7.7 30 209-238 70-99 (272)
258 PRK05541 adenylylsulfate kinas 96.6 0.0026 5.6E-08 56.2 4.2 36 210-245 6-41 (176)
259 PF00910 RNA_helicase: RNA hel 96.6 0.0013 2.7E-08 52.8 2.0 25 214-238 1-25 (107)
260 PRK14527 adenylate kinase; Pro 96.6 0.0033 7.2E-08 56.4 4.9 26 210-235 5-30 (191)
261 PF13238 AAA_18: AAA domain; P 96.5 0.0017 3.7E-08 53.8 2.8 22 214-235 1-22 (129)
262 TIGR01425 SRP54_euk signal rec 96.5 0.056 1.2E-06 54.2 13.7 29 210-238 99-127 (429)
263 cd01858 NGP_1 NGP-1. Autoanti 96.5 0.026 5.5E-07 48.8 9.9 43 192-234 82-125 (157)
264 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.011 2.3E-07 50.3 7.3 103 210-333 25-130 (144)
265 PF07726 AAA_3: ATPase family 96.5 0.0026 5.7E-08 51.8 3.3 28 214-241 2-29 (131)
266 PF00485 PRK: Phosphoribulokin 96.5 0.0022 4.8E-08 57.6 3.2 26 213-238 1-26 (194)
267 COG0563 Adk Adenylate kinase a 96.5 0.0041 8.9E-08 54.7 4.7 95 213-314 2-100 (178)
268 TIGR03499 FlhF flagellar biosy 96.4 0.013 2.8E-07 56.0 8.5 29 210-238 193-221 (282)
269 PRK05917 DNA polymerase III su 96.4 0.1 2.2E-06 49.5 14.3 127 198-347 7-154 (290)
270 cd01122 GP4d_helicase GP4d_hel 96.4 0.022 4.8E-07 54.2 10.1 37 210-246 29-66 (271)
271 KOG0735 AAA+-type ATPase [Post 96.4 0.042 9E-07 57.1 12.2 173 190-387 669-872 (952)
272 PF13671 AAA_33: AAA domain; P 96.4 0.0023 5E-08 54.2 3.0 24 213-236 1-24 (143)
273 PRK14528 adenylate kinase; Pro 96.4 0.0064 1.4E-07 54.2 5.9 24 212-235 2-25 (186)
274 PRK12726 flagellar biosynthesi 96.4 0.016 3.6E-07 56.6 8.9 37 210-246 205-241 (407)
275 PRK10463 hydrogenase nickel in 96.4 0.0033 7.2E-08 59.3 4.1 36 209-244 102-137 (290)
276 TIGR02915 PEP_resp_reg putativ 96.4 0.12 2.6E-06 53.1 15.8 48 188-235 139-186 (445)
277 PRK08233 hypothetical protein; 96.4 0.0028 6.1E-08 56.3 3.4 26 211-236 3-28 (182)
278 cd02019 NK Nucleoside/nucleoti 96.4 0.0027 5.8E-08 46.3 2.6 23 213-235 1-23 (69)
279 PRK06762 hypothetical protein; 96.4 0.0029 6.4E-08 55.3 3.4 25 211-235 2-26 (166)
280 TIGR03574 selen_PSTK L-seryl-t 96.4 0.0047 1E-07 58.0 4.9 25 213-237 1-25 (249)
281 COG0468 RecA RecA/RadA recombi 96.4 0.0088 1.9E-07 56.3 6.6 45 202-246 51-95 (279)
282 PRK12723 flagellar biosynthesi 96.4 0.04 8.6E-07 54.8 11.5 27 210-236 173-199 (388)
283 PF08433 KTI12: Chromatin asso 96.4 0.0055 1.2E-07 57.8 5.3 27 212-238 2-28 (270)
284 cd03247 ABCC_cytochrome_bd The 96.4 0.0091 2E-07 52.8 6.5 27 210-236 27-53 (178)
285 PRK15115 response regulator Gl 96.3 0.2 4.3E-06 51.5 17.1 48 188-235 134-181 (444)
286 cd03214 ABC_Iron-Siderophores_ 96.3 0.017 3.7E-07 51.2 7.9 122 210-333 24-161 (180)
287 KOG0736 Peroxisome assembly fa 96.3 0.04 8.7E-07 57.8 11.3 49 189-237 673-731 (953)
288 TIGR03878 thermo_KaiC_2 KaiC d 96.3 0.0054 1.2E-07 57.8 4.7 38 209-246 34-71 (259)
289 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.007 1.5E-07 56.3 5.3 48 199-246 9-56 (237)
290 PRK05480 uridine/cytidine kina 96.2 0.0042 9.1E-08 56.6 3.7 27 209-235 4-30 (209)
291 PRK07276 DNA polymerase III su 96.2 0.27 5.7E-06 46.9 15.9 68 290-358 103-173 (290)
292 COG1703 ArgK Putative periplas 96.2 0.0069 1.5E-07 56.5 4.9 43 198-240 38-80 (323)
293 TIGR01351 adk adenylate kinase 96.2 0.0093 2E-07 54.4 5.9 22 214-235 2-23 (210)
294 COG1875 NYN ribonuclease and A 96.2 0.03 6.5E-07 53.7 9.2 43 189-233 225-267 (436)
295 COG4608 AppF ABC-type oligopep 96.2 0.013 2.9E-07 54.1 6.8 123 210-335 38-175 (268)
296 PTZ00088 adenylate kinase 1; P 96.2 0.0088 1.9E-07 55.0 5.7 23 213-235 8-30 (229)
297 PRK09270 nucleoside triphospha 96.2 0.0072 1.6E-07 55.9 5.2 31 208-238 30-60 (229)
298 TIGR01818 ntrC nitrogen regula 96.2 0.092 2E-06 54.2 14.0 49 188-236 134-182 (463)
299 COG0529 CysC Adenylylsulfate k 96.2 0.0096 2.1E-07 51.1 5.3 32 209-240 21-52 (197)
300 PTZ00301 uridine kinase; Provi 96.2 0.0044 9.4E-08 56.2 3.5 26 211-236 3-28 (210)
301 PRK14532 adenylate kinase; Pro 96.2 0.011 2.3E-07 52.9 6.1 22 214-235 3-24 (188)
302 TIGR02524 dot_icm_DotB Dot/Icm 96.2 0.01 2.2E-07 58.5 6.3 95 211-311 134-231 (358)
303 PRK14531 adenylate kinase; Pro 96.2 0.0091 2E-07 53.1 5.5 23 213-235 4-26 (183)
304 COG0467 RAD55 RecA-superfamily 96.2 0.0073 1.6E-07 57.1 5.1 44 203-246 15-58 (260)
305 PRK11361 acetoacetate metaboli 96.2 0.15 3.2E-06 52.6 15.2 48 188-235 143-190 (457)
306 CHL00206 ycf2 Ycf2; Provisiona 96.1 0.051 1.1E-06 63.0 12.1 26 210-235 1629-1654(2281)
307 cd02027 APSK Adenosine 5'-phos 96.1 0.021 4.5E-07 48.9 7.3 24 213-236 1-24 (149)
308 PLN02674 adenylate kinase 96.1 0.018 3.9E-07 53.2 7.3 25 211-235 31-55 (244)
309 cd03222 ABC_RNaseL_inhibitor T 96.1 0.019 4.2E-07 50.5 7.2 106 210-334 24-136 (177)
310 cd03228 ABCC_MRP_Like The MRP 96.1 0.013 2.8E-07 51.5 6.1 121 210-334 27-159 (171)
311 PRK03839 putative kinase; Prov 96.1 0.0047 1E-07 54.8 3.3 24 213-236 2-25 (180)
312 PRK00131 aroK shikimate kinase 96.1 0.005 1.1E-07 54.1 3.5 26 211-236 4-29 (175)
313 KOG0728 26S proteasome regulat 96.1 0.061 1.3E-06 48.7 10.1 146 192-360 151-331 (404)
314 TIGR00235 udk uridine kinase. 96.1 0.0058 1.2E-07 55.6 3.9 28 209-236 4-31 (207)
315 PF03266 NTPase_1: NTPase; In 96.1 0.0061 1.3E-07 53.2 3.8 24 214-237 2-25 (168)
316 PRK04040 adenylate kinase; Pro 96.1 0.0059 1.3E-07 54.4 3.7 25 212-236 3-27 (188)
317 cd03115 SRP The signal recogni 96.1 0.035 7.6E-07 48.8 8.6 26 213-238 2-27 (173)
318 KOG0739 AAA+-type ATPase [Post 96.1 0.072 1.6E-06 49.6 10.6 49 188-236 133-191 (439)
319 PRK00889 adenylylsulfate kinas 96.0 0.0078 1.7E-07 53.1 4.3 28 210-237 3-30 (175)
320 PF13245 AAA_19: Part of AAA d 96.0 0.017 3.7E-07 42.9 5.4 25 211-235 10-34 (76)
321 TIGR01360 aden_kin_iso1 adenyl 96.0 0.0055 1.2E-07 54.7 3.3 25 211-235 3-27 (188)
322 cd00227 CPT Chloramphenicol (C 96.0 0.0056 1.2E-07 54.0 3.3 26 211-236 2-27 (175)
323 PRK06217 hypothetical protein; 96.0 0.025 5.5E-07 50.2 7.5 24 213-236 3-26 (183)
324 KOG0729 26S proteasome regulat 96.0 0.073 1.6E-06 48.7 10.3 46 190-235 179-235 (435)
325 cd03223 ABCD_peroxisomal_ALDP 96.0 0.016 3.5E-07 50.6 6.1 118 210-333 26-151 (166)
326 PRK06547 hypothetical protein; 96.0 0.0065 1.4E-07 53.2 3.6 27 209-235 13-39 (172)
327 KOG1051 Chaperone HSP104 and r 96.0 0.067 1.5E-06 58.0 11.6 107 190-308 564-678 (898)
328 PRK15424 propionate catabolism 96.0 0.044 9.6E-07 56.9 10.1 48 187-234 218-265 (538)
329 cd01428 ADK Adenylate kinase ( 96.0 0.022 4.8E-07 51.1 7.1 22 214-235 2-23 (194)
330 COG0465 HflB ATP-dependent Zn 96.0 0.06 1.3E-06 55.9 10.8 178 185-387 147-357 (596)
331 TIGR02858 spore_III_AA stage I 96.0 0.037 8E-07 52.2 8.6 114 211-332 111-231 (270)
332 COG1102 Cmk Cytidylate kinase 96.0 0.0055 1.2E-07 51.6 2.7 24 213-236 2-25 (179)
333 TIGR02012 tigrfam_recA protein 95.9 0.011 2.4E-07 57.0 5.1 48 199-246 42-90 (321)
334 PRK00625 shikimate kinase; Pro 95.9 0.006 1.3E-07 53.5 3.1 24 213-236 2-25 (173)
335 TIGR02525 plasmid_TraJ plasmid 95.9 0.011 2.4E-07 58.3 5.3 93 212-311 150-244 (372)
336 PF00625 Guanylate_kin: Guanyl 95.9 0.0093 2E-07 53.0 4.4 35 211-245 2-36 (183)
337 PHA02244 ATPase-like protein 95.9 0.0078 1.7E-07 58.6 4.1 51 187-237 95-145 (383)
338 PRK02496 adk adenylate kinase; 95.9 0.016 3.5E-07 51.5 5.9 23 213-235 3-25 (184)
339 cd01124 KaiC KaiC is a circadi 95.9 0.0071 1.5E-07 53.9 3.5 33 214-246 2-34 (187)
340 PF06745 KaiC: KaiC; InterPro 95.9 0.0058 1.3E-07 56.4 3.0 47 200-246 8-55 (226)
341 TIGR00959 ffh signal recogniti 95.9 0.051 1.1E-06 54.8 9.8 27 210-236 98-124 (428)
342 COG2204 AtoC Response regulato 95.9 0.66 1.4E-05 47.0 17.5 49 186-234 139-187 (464)
343 cd01125 repA Hexameric Replica 95.9 0.05 1.1E-06 50.7 9.3 24 213-236 3-26 (239)
344 cd02028 UMPK_like Uridine mono 95.9 0.0079 1.7E-07 53.2 3.6 25 213-237 1-25 (179)
345 COG4133 CcmA ABC-type transpor 95.9 0.054 1.2E-06 47.1 8.5 28 211-238 28-55 (209)
346 COG1419 FlhF Flagellar GTP-bin 95.9 0.039 8.4E-07 54.1 8.6 26 211-236 203-228 (407)
347 TIGR03881 KaiC_arch_4 KaiC dom 95.9 0.014 3E-07 54.0 5.5 48 199-246 8-55 (229)
348 PRK05973 replicative DNA helic 95.9 0.011 2.5E-07 54.3 4.7 38 209-246 62-99 (237)
349 PRK04328 hypothetical protein; 95.9 0.012 2.7E-07 55.0 5.1 48 199-246 11-58 (249)
350 PRK14529 adenylate kinase; Pro 95.9 0.018 3.9E-07 52.5 5.9 93 214-312 3-97 (223)
351 cd03216 ABC_Carb_Monos_I This 95.9 0.02 4.3E-07 49.8 6.0 117 210-333 25-145 (163)
352 PF12775 AAA_7: P-loop contain 95.8 0.0086 1.9E-07 56.7 3.9 27 211-237 33-59 (272)
353 PF06068 TIP49: TIP49 C-termin 95.8 0.015 3.3E-07 56.2 5.5 56 185-240 21-79 (398)
354 cd00983 recA RecA is a bacter 95.8 0.013 2.8E-07 56.6 5.0 48 199-246 42-90 (325)
355 PRK12727 flagellar biosynthesi 95.8 0.03 6.5E-07 57.2 7.8 29 210-238 349-377 (559)
356 KOG0652 26S proteasome regulat 95.8 0.18 4E-06 46.0 11.8 49 190-238 173-232 (424)
357 PRK03846 adenylylsulfate kinas 95.8 0.012 2.7E-07 53.0 4.6 37 209-245 22-58 (198)
358 COG3910 Predicted ATPase [Gene 95.8 0.083 1.8E-06 46.0 9.1 25 210-234 36-60 (233)
359 cd03230 ABC_DR_subfamily_A Thi 95.8 0.038 8.2E-07 48.6 7.6 27 210-236 25-51 (173)
360 TIGR02238 recomb_DMC1 meiotic 95.8 0.042 9.2E-07 53.1 8.4 36 199-234 84-119 (313)
361 PF13086 AAA_11: AAA domain; P 95.8 0.024 5.2E-07 52.3 6.7 37 195-235 5-41 (236)
362 COG0572 Udk Uridine kinase [Nu 95.8 0.011 2.4E-07 53.0 4.1 29 210-238 7-35 (218)
363 PRK09435 membrane ATPase/prote 95.8 0.019 4.2E-07 55.7 6.0 40 199-238 44-83 (332)
364 PRK14738 gmk guanylate kinase; 95.8 0.0087 1.9E-07 54.3 3.4 28 207-234 9-36 (206)
365 COG1224 TIP49 DNA helicase TIP 95.7 0.019 4.2E-07 54.7 5.7 56 185-240 36-94 (450)
366 cd01857 HSR1_MMR1 HSR1/MMR1. 95.7 0.097 2.1E-06 44.2 9.6 50 61-112 3-52 (141)
367 PRK05703 flhF flagellar biosyn 95.7 0.037 8.1E-07 55.9 8.1 26 211-236 221-246 (424)
368 COG0714 MoxR-like ATPases [Gen 95.7 0.015 3.2E-07 57.0 5.1 48 189-240 25-72 (329)
369 PRK05439 pantothenate kinase; 95.7 0.013 2.9E-07 56.1 4.5 30 208-237 83-112 (311)
370 PF08298 AAA_PrkA: PrkA AAA do 95.7 0.013 2.8E-07 56.5 4.4 51 188-238 61-115 (358)
371 PF09848 DUF2075: Uncharacteri 95.7 0.034 7.4E-07 55.1 7.6 35 212-246 2-38 (352)
372 TIGR00390 hslU ATP-dependent p 95.7 0.035 7.6E-07 55.0 7.4 51 189-239 13-75 (441)
373 PRK09354 recA recombinase A; P 95.7 0.017 3.6E-07 56.2 5.2 48 199-246 47-95 (349)
374 cd02021 GntK Gluconate kinase 95.7 0.0074 1.6E-07 51.7 2.5 23 213-235 1-23 (150)
375 PF03193 DUF258: Protein of un 95.7 0.015 3.2E-07 50.0 4.2 35 195-234 24-58 (161)
376 PRK13947 shikimate kinase; Pro 95.7 0.0089 1.9E-07 52.5 3.1 25 213-237 3-27 (171)
377 PRK14526 adenylate kinase; Pro 95.6 0.024 5.2E-07 51.5 5.9 22 214-235 3-24 (211)
378 cd03246 ABCC_Protease_Secretio 95.6 0.017 3.6E-07 50.9 4.7 27 210-236 27-53 (173)
379 TIGR02322 phosphon_PhnN phosph 95.6 0.0092 2E-07 52.8 3.1 25 212-236 2-26 (179)
380 COG1936 Predicted nucleotide k 95.6 0.0086 1.9E-07 51.2 2.7 20 213-232 2-21 (180)
381 TIGR02533 type_II_gspE general 95.6 0.048 1E-06 56.1 8.7 114 196-328 230-343 (486)
382 cd00071 GMPK Guanosine monopho 95.6 0.0084 1.8E-07 50.5 2.6 25 214-238 2-26 (137)
383 TIGR00708 cobA cob(I)alamin ad 95.6 0.037 8E-07 48.1 6.6 118 212-330 6-140 (173)
384 COG0378 HypB Ni2+-binding GTPa 95.6 0.017 3.7E-07 50.5 4.5 37 211-247 13-49 (202)
385 PF02374 ArsA_ATPase: Anion-tr 95.6 0.014 3.1E-07 56.2 4.5 34 212-245 2-35 (305)
386 PF03205 MobB: Molybdopterin g 95.6 0.014 3.1E-07 49.2 3.9 34 212-245 1-35 (140)
387 KOG0651 26S proteasome regulat 95.6 0.054 1.2E-06 50.8 7.9 30 210-239 165-194 (388)
388 PRK08533 flagellar accessory p 95.6 0.011 2.5E-07 54.5 3.6 38 209-246 22-59 (230)
389 COG2884 FtsE Predicted ATPase 95.6 0.15 3.2E-06 44.6 10.0 55 281-336 145-203 (223)
390 PRK05537 bifunctional sulfate 95.6 0.018 3.8E-07 60.5 5.4 51 187-237 368-418 (568)
391 cd02024 NRK1 Nicotinamide ribo 95.6 0.0085 1.8E-07 53.1 2.5 23 213-235 1-23 (187)
392 cd02020 CMPK Cytidine monophos 95.5 0.0098 2.1E-07 50.6 2.8 23 213-235 1-23 (147)
393 TIGR02655 circ_KaiC circadian 95.5 0.019 4.1E-07 59.4 5.3 51 196-246 248-298 (484)
394 COG0003 ArsA Predicted ATPase 95.5 0.019 4.2E-07 55.3 5.1 35 211-245 2-36 (322)
395 COG1428 Deoxynucleoside kinase 95.5 0.011 2.4E-07 52.4 3.0 26 211-236 4-29 (216)
396 PRK04301 radA DNA repair and r 95.5 0.038 8.2E-07 53.9 7.1 39 198-236 89-127 (317)
397 PRK10751 molybdopterin-guanine 95.5 0.021 4.6E-07 49.7 4.7 29 210-238 5-33 (173)
398 PRK14737 gmk guanylate kinase; 95.5 0.012 2.6E-07 52.4 3.2 26 210-235 3-28 (186)
399 cd02023 UMPK Uridine monophosp 95.5 0.0095 2.1E-07 53.7 2.6 23 213-235 1-23 (198)
400 cd02025 PanK Pantothenate kina 95.5 0.0092 2E-07 54.7 2.5 24 213-236 1-24 (220)
401 TIGR03880 KaiC_arch_3 KaiC dom 95.5 0.023 4.9E-07 52.4 5.2 47 200-246 5-51 (224)
402 COG1643 HrpA HrpA-like helicas 95.5 0.088 1.9E-06 57.2 10.2 128 195-330 53-205 (845)
403 PF02367 UPF0079: Uncharacteri 95.5 0.018 3.9E-07 47.0 3.9 27 209-235 13-39 (123)
404 COG3854 SpoIIIAA ncharacterize 95.4 0.048 1E-06 48.9 6.7 28 211-238 137-164 (308)
405 COG0703 AroK Shikimate kinase 95.4 0.027 5.9E-07 48.6 5.1 28 212-239 3-30 (172)
406 PRK12339 2-phosphoglycerate ki 95.4 0.013 2.9E-07 52.5 3.4 25 211-235 3-27 (197)
407 PRK14723 flhF flagellar biosyn 95.4 0.2 4.3E-06 53.8 12.6 26 211-236 185-210 (767)
408 TIGR01650 PD_CobS cobaltochela 95.4 0.03 6.5E-07 53.8 5.9 48 188-239 45-92 (327)
409 COG3640 CooC CO dehydrogenase 95.4 0.02 4.4E-07 51.5 4.4 37 213-249 2-38 (255)
410 PF07693 KAP_NTPase: KAP famil 95.4 0.055 1.2E-06 52.9 8.1 45 194-238 2-47 (325)
411 COG0194 Gmk Guanylate kinase [ 95.4 0.017 3.7E-07 50.2 3.8 25 211-235 4-28 (191)
412 KOG3347 Predicted nucleotide k 95.4 0.012 2.7E-07 48.8 2.7 25 211-235 7-31 (176)
413 PRK13808 adenylate kinase; Pro 95.4 0.027 5.7E-07 54.5 5.4 22 214-235 3-24 (333)
414 cd03232 ABC_PDR_domain2 The pl 95.4 0.058 1.3E-06 48.3 7.4 25 210-234 32-56 (192)
415 PRK05818 DNA polymerase III su 95.4 2 4.4E-05 40.0 17.4 57 291-347 88-147 (261)
416 PRK15453 phosphoribulokinase; 95.4 0.021 4.5E-07 53.5 4.5 29 209-237 3-31 (290)
417 TIGR02788 VirB11 P-type DNA tr 95.4 0.034 7.4E-07 53.9 6.2 92 210-309 143-235 (308)
418 cd00464 SK Shikimate kinase (S 95.4 0.013 2.9E-07 50.2 3.1 22 214-235 2-23 (154)
419 PRK13949 shikimate kinase; Pro 95.4 0.014 3.1E-07 51.0 3.2 24 213-236 3-26 (169)
420 TIGR00750 lao LAO/AO transport 95.4 0.029 6.4E-07 54.1 5.7 31 208-238 31-61 (300)
421 PRK10416 signal recognition pa 95.3 0.027 5.8E-07 54.6 5.3 29 210-238 113-141 (318)
422 KOG0742 AAA+-type ATPase [Post 95.3 0.085 1.8E-06 51.3 8.5 29 211-239 384-412 (630)
423 cd03281 ABC_MSH5_euk MutS5 hom 95.3 0.086 1.9E-06 48.1 8.4 23 211-233 29-51 (213)
424 PRK12724 flagellar biosynthesi 95.3 0.051 1.1E-06 54.1 7.3 25 211-235 223-247 (432)
425 PRK05201 hslU ATP-dependent pr 95.3 0.025 5.3E-07 56.1 5.0 50 189-238 16-77 (443)
426 TIGR00764 lon_rel lon-related 95.3 0.032 6.8E-07 59.2 6.2 56 187-246 17-73 (608)
427 PRK13948 shikimate kinase; Pro 95.3 0.016 3.5E-07 51.2 3.5 28 210-237 9-36 (182)
428 TIGR01313 therm_gnt_kin carboh 95.3 0.011 2.5E-07 51.3 2.5 22 214-235 1-22 (163)
429 TIGR03263 guanyl_kin guanylate 95.3 0.012 2.7E-07 52.0 2.8 24 212-235 2-25 (180)
430 KOG1532 GTPase XAB1, interacts 95.3 0.017 3.7E-07 52.9 3.6 32 210-241 18-49 (366)
431 PF05970 PIF1: PIF1-like helic 95.3 0.039 8.4E-07 54.9 6.5 29 210-238 21-49 (364)
432 TIGR02236 recomb_radA DNA repa 95.3 0.054 1.2E-06 52.6 7.4 38 199-236 83-120 (310)
433 PLN02459 probable adenylate ki 95.3 0.043 9.2E-07 51.1 6.2 91 213-312 31-129 (261)
434 PRK14530 adenylate kinase; Pro 95.3 0.014 3.1E-07 53.4 3.1 23 213-235 5-27 (215)
435 COG2401 ABC-type ATPase fused 95.3 0.031 6.8E-07 54.4 5.4 46 190-235 373-433 (593)
436 PRK00300 gmk guanylate kinase; 95.3 0.015 3.3E-07 52.7 3.2 27 210-236 4-30 (205)
437 PF08477 Miro: Miro-like prote 95.2 0.015 3.3E-07 47.3 2.8 21 214-234 2-22 (119)
438 PRK13765 ATP-dependent proteas 95.2 0.029 6.2E-07 59.4 5.5 59 185-247 28-87 (637)
439 PF06414 Zeta_toxin: Zeta toxi 95.2 0.016 3.4E-07 52.3 3.2 28 209-236 13-40 (199)
440 PRK10646 ADP-binding protein; 95.2 0.032 6.9E-07 47.4 4.7 42 195-236 12-53 (153)
441 PLN02200 adenylate kinase fami 95.2 0.018 3.9E-07 53.3 3.5 26 210-235 42-67 (234)
442 cd03233 ABC_PDR_domain1 The pl 95.2 0.08 1.7E-06 47.9 7.7 27 210-236 32-58 (202)
443 PF13521 AAA_28: AAA domain; P 95.2 0.016 3.4E-07 50.5 2.9 21 214-234 2-22 (163)
444 cd00984 DnaB_C DnaB helicase C 95.2 0.057 1.2E-06 50.3 6.9 38 209-246 11-49 (242)
445 PF00006 ATP-synt_ab: ATP synt 95.2 0.028 6E-07 51.1 4.5 83 211-300 15-114 (215)
446 COG2804 PulE Type II secretory 95.2 0.1 2.2E-06 52.7 8.8 116 195-329 245-360 (500)
447 PRK09519 recA DNA recombinatio 95.1 0.06 1.3E-06 57.9 7.6 49 198-246 46-95 (790)
448 PRK09280 F0F1 ATP synthase sub 95.1 0.073 1.6E-06 53.8 7.8 89 210-300 143-247 (463)
449 TIGR00073 hypB hydrogenase acc 95.1 0.026 5.7E-07 51.2 4.4 30 208-237 19-48 (207)
450 COG1221 PspF Transcriptional r 95.1 0.47 1E-05 47.1 13.2 50 185-234 75-124 (403)
451 PRK13946 shikimate kinase; Pro 95.1 0.018 4E-07 51.2 3.3 26 211-236 10-35 (184)
452 TIGR00041 DTMP_kinase thymidyl 95.1 0.045 9.7E-07 49.1 5.8 26 212-237 4-29 (195)
453 smart00072 GuKc Guanylate kina 95.1 0.019 4.1E-07 51.1 3.3 29 211-239 2-30 (184)
454 COG2805 PilT Tfp pilus assembl 95.1 0.064 1.4E-06 50.2 6.7 105 210-327 124-229 (353)
455 cd00820 PEPCK_HprK Phosphoenol 95.1 0.02 4.4E-07 45.4 3.1 22 211-232 15-36 (107)
456 PF03029 ATP_bind_1: Conserved 95.1 0.018 4E-07 53.3 3.3 23 216-238 1-23 (238)
457 PRK13768 GTPase; Provisional 95.1 0.026 5.6E-07 53.0 4.4 27 212-238 3-29 (253)
458 PRK06995 flhF flagellar biosyn 95.1 0.095 2.1E-06 53.5 8.6 26 211-236 256-281 (484)
459 PRK12597 F0F1 ATP synthase sub 95.1 0.063 1.4E-06 54.4 7.2 89 210-300 142-246 (461)
460 COG2019 AdkA Archaeal adenylat 95.0 0.024 5.2E-07 48.2 3.4 25 211-235 4-28 (189)
461 TIGR03600 phage_DnaB phage rep 95.0 0.37 8E-06 49.1 12.8 71 192-269 176-247 (421)
462 TIGR00176 mobB molybdopterin-g 95.0 0.022 4.8E-07 49.0 3.4 26 213-238 1-26 (155)
463 cd00267 ABC_ATPase ABC (ATP-bi 95.0 0.02 4.4E-07 49.4 3.2 117 211-335 25-145 (157)
464 TIGR02655 circ_KaiC circadian 95.0 0.031 6.7E-07 57.8 5.1 48 199-246 9-57 (484)
465 PRK14493 putative bifunctional 95.0 0.025 5.4E-07 53.5 3.9 34 212-246 2-35 (274)
466 PRK13975 thymidylate kinase; P 95.0 0.021 4.5E-07 51.3 3.3 26 212-237 3-28 (196)
467 PRK10078 ribose 1,5-bisphospho 95.0 0.019 4E-07 51.3 2.9 25 212-236 3-27 (186)
468 PRK10436 hypothetical protein; 95.0 0.072 1.6E-06 54.3 7.5 114 196-328 206-319 (462)
469 PRK06761 hypothetical protein; 95.0 0.029 6.4E-07 53.0 4.3 27 212-238 4-30 (282)
470 PF06309 Torsin: Torsin; Inte 95.0 0.048 1E-06 44.4 4.9 41 195-235 36-77 (127)
471 cd01672 TMPK Thymidine monopho 95.0 0.047 1E-06 49.0 5.5 25 213-237 2-26 (200)
472 TIGR01039 atpD ATP synthase, F 94.9 0.095 2.1E-06 52.8 8.0 89 210-300 142-246 (461)
473 cd03213 ABCG_EPDR ABCG transpo 94.9 0.08 1.7E-06 47.5 7.0 26 210-235 34-59 (194)
474 KOG0727 26S proteasome regulat 94.9 0.034 7.3E-07 50.4 4.2 50 190-239 157-217 (408)
475 TIGR01287 nifH nitrogenase iro 94.9 0.025 5.4E-07 54.0 3.7 28 212-239 1-28 (275)
476 PRK05057 aroK shikimate kinase 94.9 0.024 5.2E-07 49.8 3.3 25 212-236 5-29 (172)
477 TIGR01069 mutS2 MutS2 family p 94.9 0.022 4.8E-07 62.0 3.7 24 211-234 322-345 (771)
478 PRK10875 recD exonuclease V su 94.9 0.08 1.7E-06 56.0 7.7 27 211-237 167-193 (615)
479 PRK10365 transcriptional regul 94.9 1.2 2.6E-05 45.6 16.3 47 189-235 140-186 (441)
480 COG0802 Predicted ATPase or ki 94.9 0.044 9.5E-07 46.0 4.6 44 193-236 7-50 (149)
481 cd03287 ABC_MSH3_euk MutS3 hom 94.9 0.019 4E-07 52.6 2.7 24 210-233 30-53 (222)
482 PRK14721 flhF flagellar biosyn 94.9 0.12 2.6E-06 51.9 8.5 26 210-235 190-215 (420)
483 PRK05986 cob(I)alamin adenolsy 94.8 0.033 7.2E-07 49.1 3.9 119 211-330 22-158 (191)
484 cd01855 YqeH YqeH. YqeH is an 94.8 0.21 4.6E-06 44.5 9.4 40 191-234 111-150 (190)
485 cd00046 DEXDc DEAD-like helica 94.8 0.095 2.1E-06 43.5 6.8 25 213-237 2-26 (144)
486 smart00487 DEXDc DEAD-like hel 94.8 0.14 3E-06 45.5 8.2 23 212-234 25-47 (201)
487 TIGR02782 TrbB_P P-type conjug 94.8 0.026 5.7E-07 54.2 3.6 87 212-309 133-221 (299)
488 smart00534 MUTSac ATPase domai 94.8 0.01 2.2E-07 52.9 0.7 21 213-233 1-21 (185)
489 TIGR02768 TraA_Ti Ti-type conj 94.8 0.15 3.2E-06 55.7 9.6 25 28-52 177-201 (744)
490 KOG0730 AAA+-type ATPase [Post 94.8 0.2 4.3E-06 52.0 9.8 174 188-385 184-386 (693)
491 COG4240 Predicted kinase [Gene 94.8 0.076 1.7E-06 47.5 6.0 32 208-239 47-78 (300)
492 PLN02318 phosphoribulokinase/u 94.8 0.036 7.7E-07 57.3 4.5 29 207-235 61-89 (656)
493 TIGR00554 panK_bact pantothena 94.8 0.029 6.3E-07 53.4 3.7 28 209-236 60-87 (290)
494 cd03114 ArgK-like The function 94.7 0.031 6.8E-07 47.7 3.5 25 214-238 2-26 (148)
495 COG1124 DppF ABC-type dipeptid 94.7 0.032 6.8E-07 50.6 3.6 25 210-234 32-56 (252)
496 PRK04182 cytidylate kinase; Pr 94.7 0.027 5.8E-07 49.7 3.3 24 213-236 2-25 (180)
497 cd02117 NifH_like This family 94.7 0.033 7.1E-07 50.8 3.9 27 212-238 1-27 (212)
498 PHA02530 pseT polynucleotide k 94.7 0.025 5.5E-07 54.7 3.3 24 212-235 3-26 (300)
499 TIGR02173 cyt_kin_arch cytidyl 94.7 0.026 5.6E-07 49.4 3.1 23 213-235 2-24 (171)
500 cd01130 VirB11-like_ATPase Typ 94.7 0.039 8.5E-07 49.2 4.2 27 211-237 25-51 (186)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.4e-79 Score=682.19 Aligned_cols=492 Identities=41% Similarity=0.664 Sum_probs=434.4
Q ss_pred CCCCCCCCCCCCCCcccEEEcccccccccchHHHHHHHHHhcCcceeeccccccCCCchhHHHHHHHhhcceEEEEecCC
Q 042739 1 MASSSSASSLDAQNKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIETTDISIIIFSKG 80 (505)
Q Consensus 1 ~~~~~~~~~~~~~~~~dvFisy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~ 80 (505)
|++|+|++ ..++|||||||+|+|++++|+.||+++|.++||.+|.|. ++..|+.+..++.+||++|+++|||+|++
T Consensus 1 ~~~~~~~~---~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ 76 (1153)
T PLN03210 1 MASSSSSS---RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKN 76 (1153)
T ss_pred CCCCCCCC---CCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCC
Confidence 55555433 468999999999999999999999999999999999998 79999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHhhhhCCCeEEEEEeecCCccccccccchHHHHHHHHhhCh-hhHHHHHHHHHhhccCCCCCCCC
Q 042739 81 YASSKWCLNELVKTLDCKRTNGQIVIPVFYQIDPSDVRKQSESLEEAFLEHEKNFP-DKVQKWRAALTEASNLSGYDPTE 159 (505)
Q Consensus 81 ~~~s~~~~~El~~~~~~~~~~~~~v~pv~~~~~p~~vr~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~ 159 (505)
|++|.||++||++|++|.+..+++|+||||+|+|++||+|+|+|+++|.+++.+.. +++++|++||.+++++.|+++..
T Consensus 77 ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~ 156 (1153)
T PLN03210 77 YASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQN 156 (1153)
T ss_pred cccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCC
Confidence 99999999999999999999999999999999999999999999999999887754 45999999999999999999998
Q ss_pred CChhHHHHHHHHHhhccccccCCCCCCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccc
Q 042739 160 SRNEAELVEEIVADISKKLEDMSDSTDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYF 239 (505)
Q Consensus 160 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (505)
+.+|++++++|+++|..++...++ .+.+.+|||+..+++|..+|..+.+++++|+|+||||+||||||+.+++++..+|
T Consensus 157 ~~~E~~~i~~Iv~~v~~~l~~~~~-~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F 235 (1153)
T PLN03210 157 WPNEAKMIEEIANDVLGKLNLTPS-NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQF 235 (1153)
T ss_pred CCCHHHHHHHHHHHHHHhhccccC-cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcC
Confidence 899999999999999999987776 7888999999999999999987677799999999999999999999999999999
Q ss_pred cceEEEeec--cccc---c------cccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCCHHHHH
Q 042739 240 QGNCFMANV--REES---N------KLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDEFTQLE 308 (505)
Q Consensus 240 ~~~~~~~~~--~~~~---~------~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~ 308 (505)
+..+|+... .... . ......+..+++..+...... .......+++.+.++|+||||||+ ++..+++
T Consensus 236 ~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~--~~~~~~~~~~~L~~krvLLVLDdv-~~~~~l~ 312 (1153)
T PLN03210 236 QSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI--KIYHLGAMEERLKHRKVLIFIDDL-DDQDVLD 312 (1153)
T ss_pred CeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc--ccCCHHHHHHHHhCCeEEEEEeCC-CCHHHHH
Confidence 988887531 1000 0 011233445556555443221 111246678889999999999999 7788899
Q ss_pred HHhcCcCCCCCCCEEEEEeCcchhhcccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHH
Q 042739 309 SLAGVIDRFSPGSRIIITTRDKRVLDKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLAL 388 (505)
Q Consensus 309 ~l~~~l~~~~~~~~iliTsR~~~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (505)
.+.....+.++|++||||||+..++...+..+.++++.|+.++|++||++++|+...++....+++.+|+++|+|+||||
T Consensus 313 ~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl 392 (1153)
T PLN03210 313 ALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGL 392 (1153)
T ss_pred HHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHH
Confidence 88877777789999999999998887766678999999999999999999999877777778899999999999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHhhccCCCccHHHHHHHhHhcCCh-hHHHHHhhhhccCCCCCHHHHHHHHhC-CCchhhHH
Q 042739 389 EVLGSSLYQNSIQQWEDKLHNLNLISEPNIYKVLKISYDELNS-EEKGIFLDIACFFKGEDVDLLTRIQDN-PTSMCHRL 466 (505)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~~~~l~~l~~~-~~~~~~~l 466 (505)
+.+|++|++++..+|...+.++....+..+..+|+.||+.|++ .+|.+|+++|+|+.+.+.+.+..++.. +..+..++
T Consensus 393 ~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l 472 (1153)
T PLN03210 393 NVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGL 472 (1153)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhCh
Confidence 9999999999999999999999888888899999999999986 589999999999999999988888877 77778889
Q ss_pred HHHhhccceEEcCCCcEEecHHHHHHHHHHHhhcC
Q 042739 467 KILVGKSLIAISDRKRLQMHDLLQEMGQTIVRQES 501 (505)
Q Consensus 467 ~~L~~~sLl~~~~~~~~~~H~lvr~~a~~~~~~e~ 501 (505)
+.|++++||+.. .+++.||+++|++|++++++++
T Consensus 473 ~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~ 506 (1153)
T PLN03210 473 KNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS 506 (1153)
T ss_pred HHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc
Confidence 999999999987 6789999999999999999876
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-38 Score=339.34 Aligned_cols=301 Identities=27% Similarity=0.405 Sum_probs=258.1
Q ss_pred eechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhh---hcccccceEEEeecccccccccHHHHHHHHHHH
Q 042739 191 IGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQ---ISRYFQGNCFMANVREESNKLGVIRVRDEVISQ 267 (505)
Q Consensus 191 vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 267 (505)
||.+..++.+.+.|..+. ..+++|+||||+||||||+++.++ +..+|+..+|+. ++.......++.+++..
T Consensus 161 VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 999999999999998544 389999999999999999999986 568899999999 77788899999999998
Q ss_pred HhCCCCccCCC--Cc-hHHHHhccCCCeEEEEEeCCCCCHHHHHHHhcCcCCCCCCCEEEEEeCcchhhcc-cCCCcEEE
Q 042739 268 VLGENLKVGTL--TI-PQNIKKGLQRMKVLIVLDDVHDEFTQLESLAGVIDRFSPGSRIIITTRDKRVLDK-CEVSNIFE 343 (505)
Q Consensus 268 ~~~~~~~~~~~--~~-~~~l~~~l~~~~~LlVlDdv~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~-~~~~~~~~ 343 (505)
+.......... +. ...+.+.|.++|+||||||+|+ ...|+.+...++....|++|++|||+..++.. ++....++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~-~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWE-EVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIE 313 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccc-cccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccc
Confidence 87655433222 23 7888999999999999999964 44488888888877788999999999999888 66778899
Q ss_pred cCCCCHhHHHHHHHHhhcCCC-CCChhHHHHHHHHHHHhcCChHHHHHHHHhhcCC-CHHHHHHHHHhhccC-------C
Q 042739 344 VKGLEHNKAFELFCRKAFGQN-NRSHDLYQLSQRVVCYADGNPLALEVLGSSLYQN-SIQQWEDKLHNLNLI-------S 414 (505)
Q Consensus 344 l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~-~~~~~~~~l~~l~~~-------~ 414 (505)
++.|+.+|||+||++.++... ...+..++++++++++|+|+|||+..+|+.|+.+ +..+|..+...+... .
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 999999999999999997663 3334589999999999999999999999999885 677999999987664 1
Q ss_pred CccHHHHHHHhHhcCChhHHHHHhhhhccCCC--CCHHHHHHHHhC-CC------------chhhHHHHHhhccceEEcC
Q 042739 415 EPNIYKVLKISYDELNSEEKGIFLDIACFFKG--EDVDLLTRIQDN-PT------------SMCHRLKILVGKSLIAISD 479 (505)
Q Consensus 415 ~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~--~~~~~l~~l~~~-~~------------~~~~~l~~L~~~sLl~~~~ 479 (505)
.+.+..++..||+.|+++.|.||+|||.||++ +..+.+..+|.+ |+ ...+++++|++++|+....
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 35688999999999999999999999999999 577899999998 63 2345899999999998753
Q ss_pred C----CcEEecHHHHHHHHHHHh
Q 042739 480 R----KRLQMHDLLQEMGQTIVR 498 (505)
Q Consensus 480 ~----~~~~~H~lvr~~a~~~~~ 498 (505)
. ..+.|||++|++|..+++
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIAS 496 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhc
Confidence 2 469999999999999998
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=270.32 Aligned_cols=160 Identities=28% Similarity=0.477 Sum_probs=143.2
Q ss_pred CCCCCCCCcccEEEcccccccccchHHHHHHHHHhcCcceeeccccccCCCchhHHHHHHHhhcceEEEEecCCcccchh
Q 042739 7 ASSLDAQNKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIETTDISIIIFSKGYASSKW 86 (505)
Q Consensus 7 ~~~~~~~~~~dvFisy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~~~~s~~ 86 (505)
++|++...+|||||||+|+|++++|+.||+++|+++||+||+|.+++.+|+.+.+.|.+||++|+++|+|+|++|++|.|
T Consensus 18 ~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~W 97 (187)
T PLN03194 18 PSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYF 97 (187)
T ss_pred ccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchh
Confidence 35556677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhCCCeEEEEEeecCCcccccc-ccchHHHHHHHHhhChhhHHHHHHHHHhhccCCCCCCCC-CChhH
Q 042739 87 CLNELVKTLDCKRTNGQIVIPVFYQIDPSDVRKQ-SESLEEAFLEHEKNFPDKVQKWRAALTEASNLSGYDPTE-SRNEA 164 (505)
Q Consensus 87 ~~~El~~~~~~~~~~~~~v~pv~~~~~p~~vr~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~ 164 (505)
|++||.+|+++. .+||||||+|+|++|++| .|. ...+.+++|+.||.+++++.|+++.. .+++.
T Consensus 98 CLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~----------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~ 163 (187)
T PLN03194 98 CLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGT----------CPDEEIRRFNWALEEAKYTVGLTFDSLKGNWS 163 (187)
T ss_pred HHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCC----------CCHHHHHHHHHHHHHHhccccccCCCCCCCHH
Confidence 999999999864 479999999999999997 443 13456999999999999999987654 47899
Q ss_pred HHHHHHHHhhcccccc
Q 042739 165 ELVEEIVADISKKLED 180 (505)
Q Consensus 165 ~~~~~i~~~~~~~~~~ 180 (505)
+++++|+..+.+.+..
T Consensus 164 e~i~~iv~~v~k~l~~ 179 (187)
T PLN03194 164 EVVTMASDAVIKNLIE 179 (187)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998877643
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.4e-36 Score=289.57 Aligned_cols=261 Identities=30% Similarity=0.482 Sum_probs=200.6
Q ss_pred chhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhh--hcccccceEEEeecccccccccHHHHHHHHHHHHhC
Q 042739 193 INSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQ--ISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLG 270 (505)
Q Consensus 193 R~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 270 (505)
||.++++|.+.|....++.++|+|+|+||+|||+||.+++++ +..+|+..+|+. .........++..++..+..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----cccccccccccccccccccc
Confidence 789999999999876678999999999999999999999998 889998888887 33334447777888888776
Q ss_pred CCCcc---CCCCc-hHHHHhccCCCeEEEEEeCCCCCHHHHHHHhcCcCCCCCCCEEEEEeCcchhhcccCC-CcEEEcC
Q 042739 271 ENLKV---GTLTI-PQNIKKGLQRMKVLIVLDDVHDEFTQLESLAGVIDRFSPGSRIIITTRDKRVLDKCEV-SNIFEVK 345 (505)
Q Consensus 271 ~~~~~---~~~~~-~~~l~~~l~~~~~LlVlDdv~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~~-~~~~~l~ 345 (505)
..... .+... ...+.+.+.++++||||||+ ++...++.+...++....+++||+|||+..+...... ...++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv-~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDV-WDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE--SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred cccccccccccccccccchhhhccccceeeeeee-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 64432 12222 78888999999999999999 6667777777666666679999999999877765543 5789999
Q ss_pred CCCHhHHHHHHHHhhcCCC-CCChhHHHHHHHHHHHhcCChHHHHHHHHhhcC-CCHHHHHHHHHhhccCC------Ccc
Q 042739 346 GLEHNKAFELFCRKAFGQN-NRSHDLYQLSQRVVCYADGNPLALEVLGSSLYQ-NSIQQWEDKLHNLNLIS------EPN 417 (505)
Q Consensus 346 ~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~-~~~~~~~~~l~~l~~~~------~~~ 417 (505)
+|+.+++.+||.+.++... .......+.+++|++.|+|+||||+++|++++. .+..+|...++.+.... ...
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999986544 223344677899999999999999999999944 25677888777654332 466
Q ss_pred HHHHHHHhHhcCChhHHHHHhhhhccCCC--CCHHHHHHHHhC
Q 042739 418 IYKVLKISYDELNSEEKGIFLDIACFFKG--EDVDLLTRIQDN 458 (505)
Q Consensus 418 l~~~l~~s~~~L~~~~~~~l~~la~f~~~--~~~~~l~~l~~~ 458 (505)
+..++..||+.|+++.|.||.+||+||.+ ++.+.+..+|..
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~ 278 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVA 278 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHH
Confidence 99999999999999999999999999988 458999999987
No 5
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.84 E-value=1.1e-20 Score=161.46 Aligned_cols=134 Identities=40% Similarity=0.703 Sum_probs=112.8
Q ss_pred cccEEEcccc-cccccchHHHHHHHHHhcCcceeeccccccCCCchhHHHHHHHhhcceEEEEecCCcccchhhHHHHHH
Q 042739 15 KYEVFLSFRG-EDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIETTDISIIIFSKGYASSKWCLNELVK 93 (505)
Q Consensus 15 ~~dvFisy~~-~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~~~~s~~~~~El~~ 93 (505)
+|||||||++ .|....|+.+|...|...|+.+|.|.+.. |.....+|.++|++|+++|+|+|++|+.|+||..|+..
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~--~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~ 78 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEP--GGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCccc--ccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence 4999999999 34445699999999999999999998543 33333499999999999999999999999999999999
Q ss_pred HHHhhhh-CCCeEEEEEeecCCccccccccchHHHHHHHHhhChhhH--HHHHHHHHhhc
Q 042739 94 TLDCKRT-NGQIVIPVFYQIDPSDVRKQSESLEEAFLEHEKNFPDKV--QKWRAALTEAS 150 (505)
Q Consensus 94 ~~~~~~~-~~~~v~pv~~~~~p~~vr~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 150 (505)
++..... .+.+||||+++..|.++..+.+.+...+.....++.+.. ..|++.+..+.
T Consensus 79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~ 138 (140)
T smart00255 79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVP 138 (140)
T ss_pred HHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhc
Confidence 9987755 567999999998888889999999999988766666665 48888776654
No 6
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.81 E-value=4.2e-18 Score=190.18 Aligned_cols=298 Identities=16% Similarity=0.172 Sum_probs=191.9
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEV 264 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 264 (505)
+.+..+|-|..-++.|... ...+++.|+||+|.||||++.+++... +.+.|+. +.. ...+...++..+
T Consensus 11 ~~~~~~~~R~rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~~--~d~~~~~f~~~l 78 (903)
T PRK04841 11 VRLHNTVVRERLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LDE--SDNQPERFASYL 78 (903)
T ss_pred CCccccCcchHHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cCc--ccCCHHHHHHHH
Confidence 5567889998777766532 357899999999999999999998643 2577875 322 223444455555
Q ss_pred HHHHhCCCCc----c------CC-CCc---hHHHHhccC--CCeEEEEEeCCCC--CHHHHHHHhcCcCCCCCCCEEEEE
Q 042739 265 ISQVLGENLK----V------GT-LTI---PQNIKKGLQ--RMKVLIVLDDVHD--EFTQLESLAGVIDRFSPGSRIIIT 326 (505)
Q Consensus 265 l~~~~~~~~~----~------~~-~~~---~~~l~~~l~--~~~~LlVlDdv~~--~~~~~~~l~~~l~~~~~~~~iliT 326 (505)
+..+...... . .. ... ...+...+. +.+++|||||+++ +....+.+...+....++.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 5555311110 0 00 111 222323332 6799999999973 233233333333344677899999
Q ss_pred eCcchhhcccC---CCcEEEcC----CCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhcCCC
Q 042739 327 TRDKRVLDKCE---VSNIFEVK----GLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSLYQNS 399 (505)
Q Consensus 327 sR~~~~~~~~~---~~~~~~l~----~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~ 399 (505)
||......... .....+|. +|+.+|+.+||...... ....+.+.+|++.|+|+|++|.+++..+....
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-----~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~ 233 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-----PIEAAESSRLCDDVEGWATALQLIALSARQNN 233 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-----CCCHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Confidence 99853221100 12234555 99999999999776521 12345678899999999999999987765432
Q ss_pred HHHHHHHHHhhccCCCccHHHHHH-HhHhcCChhHHHHHhhhhccCCCCCHHHHHHHHhCCCchhhHHHHHhhccceEE-
Q 042739 400 IQQWEDKLHNLNLISEPNIYKVLK-ISYDELNSEEKGIFLDIACFFKGEDVDLLTRIQDNPTSMCHRLKILVGKSLIAI- 477 (505)
Q Consensus 400 ~~~~~~~l~~l~~~~~~~l~~~l~-~s~~~L~~~~~~~l~~la~f~~~~~~~~l~~l~~~~~~~~~~l~~L~~~sLl~~- 477 (505)
. ........+.......+...+. ..++.||++.+.++..+|+++ .++.+.+..+.+ ..+....|+.|.+.||+..
T Consensus 234 ~-~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~-~~~~~~~L~~l~~~~l~~~~ 310 (903)
T PRK04841 234 S-SLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG-EENGQMRLEELERQGLFIQR 310 (903)
T ss_pred C-chhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC-CCcHHHHHHHHHHCCCeeEe
Confidence 1 0111112222222344666544 448999999999999999986 888777776665 3445788999999999653
Q ss_pred cC--CCcEEecHHHHHHHHHHHhhcCC
Q 042739 478 SD--RKRLQMHDLLQEMGQTIVRQESL 502 (505)
Q Consensus 478 ~~--~~~~~~H~lvr~~a~~~~~~e~~ 502 (505)
.+ ..+|++|++++++++..+..+.+
T Consensus 311 ~~~~~~~yr~H~L~r~~l~~~l~~~~~ 337 (903)
T PRK04841 311 MDDSGEWFRYHPLFASFLRHRCQWELA 337 (903)
T ss_pred ecCCCCEEehhHHHHHHHHHHHHhcCc
Confidence 22 33799999999999998865544
No 7
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.81 E-value=1.2e-20 Score=160.77 Aligned_cols=129 Identities=34% Similarity=0.633 Sum_probs=109.4
Q ss_pred EEEcccc-cccccchHHHHHHHHHhc--CcceeeccccccCCCchhHHHHHHHhhcceEEEEecCCcccchhhHHHHHHH
Q 042739 18 VFLSFRG-EDTRNGFTSHLAAALHRK--QIQFFIDDEELKKGDEISPALSNAIETTDISIIIFSKGYASSKWCLNELVKT 94 (505)
Q Consensus 18 vFisy~~-~D~~~~~~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~~~~s~~~~~El~~~ 94 (505)
|||||++ .| ...|+.+|...|++. |+++|++.+|+.+|..+.++|.++|++|+++|+|+|++|+.|.||+.|+..+
T Consensus 1 vfisy~~~~d-~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a 79 (141)
T PF01582_consen 1 VFISYSGKDD-REWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEA 79 (141)
T ss_dssp EEEEE-GHHG-HHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHH
T ss_pred cEEEeCCCCc-HHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhh
Confidence 7999999 55 445899999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhCC--CeEEEEEeecCCcccc-ccccchHHHHHHHHhhChh-----hHHHHHHHHH
Q 042739 95 LDCKRTNG--QIVIPVFYQIDPSDVR-KQSESLEEAFLEHEKNFPD-----KVQKWRAALT 147 (505)
Q Consensus 95 ~~~~~~~~--~~v~pv~~~~~p~~vr-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~ 147 (505)
+++....+ .+|+|||+++.+.++. .+.+.+...+.+....... ....|+++..
T Consensus 80 ~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 80 LERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 99997755 7999999999999999 6788887777665443332 3678877653
No 8
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.71 E-value=3.8e-18 Score=137.05 Aligned_cols=87 Identities=33% Similarity=0.634 Sum_probs=75.7
Q ss_pred EEEcccccccccchHHHHHHHHHhcCcceeeccccccCCCchhHHHHHHHhhcceEEEEecCCcccchhhHHHHHHHHHh
Q 042739 18 VFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIETTDISIIIFSKGYASSKWCLNELVKTLDC 97 (505)
Q Consensus 18 vFisy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~~~~s~~~~~El~~~~~~ 97 (505)
|||||+++|.. |+++|...|+..|+++|+|. ++.+|+.|...|.++|++|+++|+++|++|+.|+||..|+..+.+
T Consensus 1 VFIS~~~~D~~--~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~- 76 (102)
T PF13676_consen 1 VFISYSSEDRE--FAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK- 76 (102)
T ss_dssp EEEEEEGGGCC--CHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC-
T ss_pred eEEEecCCcHH--HHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH-
Confidence 89999999966 99999999999999999997 999999999999999999999999999999999999999998843
Q ss_pred hhhCCCeEEEEEee
Q 042739 98 KRTNGQIVIPVFYQ 111 (505)
Q Consensus 98 ~~~~~~~v~pv~~~ 111 (505)
.+.+|+||..+
T Consensus 77 ---~~~~iipv~~~ 87 (102)
T PF13676_consen 77 ---RGKPIIPVRLD 87 (102)
T ss_dssp ---TSESEEEEECS
T ss_pred ---CCCEEEEEEEC
Confidence 45579999854
No 9
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.70 E-value=1.3e-15 Score=155.97 Aligned_cols=298 Identities=15% Similarity=0.192 Sum_probs=195.7
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEV 264 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 264 (505)
..+.+.|-|..-++.|.+. .+.|.+.|+.|+|.|||||+.+++. ....-..+.|+..-. ...+...+...+
T Consensus 16 ~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde---~dndp~rF~~yL 86 (894)
T COG2909 16 VRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDE---SDNDPARFLSYL 86 (894)
T ss_pred CCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCC---ccCCHHHHHHHH
Confidence 5567788888777776653 3589999999999999999999998 444456688887332 234555666666
Q ss_pred HHHHhCCCCccCC-----------CC---chHHHHhccC--CCeEEEEEeCCC--CCHHHHHHHhcCcCCCCCCCEEEEE
Q 042739 265 ISQVLGENLKVGT-----------LT---IPQNIKKGLQ--RMKVLIVLDDVH--DEFTQLESLAGVIDRFSPGSRIIIT 326 (505)
Q Consensus 265 l~~~~~~~~~~~~-----------~~---~~~~l~~~l~--~~~~LlVlDdv~--~~~~~~~~l~~~l~~~~~~~~iliT 326 (505)
+..+........+ .. ..+.+...+. .+++++||||.| .+...-..+...+...+++..+++|
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~ 166 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVT 166 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEE
Confidence 6655422221111 01 1333344333 468999999997 3333333333333445689999999
Q ss_pred eCcchhhcccC---CCcEEEcC----CCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhcCC-
Q 042739 327 TRDKRVLDKCE---VSNIFEVK----GLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSLYQN- 398 (505)
Q Consensus 327 sR~~~~~~~~~---~~~~~~l~----~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~- 398 (505)
||+...+.-.. ....++++ .|+.+|+.++|..... .+.....++.+++.++|.+-+|.+++=.+++.
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-----l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~ 241 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-----LPLDAADLKALYDRTEGWAAALQLIALALRNNT 241 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-----CCCChHHHHHHHhhcccHHHHHHHHHHHccCCC
Confidence 99874432211 11234443 5899999999977651 12234568899999999999999998877743
Q ss_pred CHHHHHHHHHhhccCCCccH-HHHHHHhHhcCChhHHHHHhhhhccCCCCCHHHHHHHHhCCCchhhHHHHHhhccceEE
Q 042739 399 SIQQWEDKLHNLNLISEPNI-YKVLKISYDELNSEEKGIFLDIACFFKGEDVDLLTRIQDNPTSMCHRLKILVGKSLIAI 477 (505)
Q Consensus 399 ~~~~~~~~l~~l~~~~~~~l-~~~l~~s~~~L~~~~~~~l~~la~f~~~~~~~~l~~l~~~~~~~~~~l~~L~~~sLl~~ 477 (505)
+.... ...+... ..-+ .-+.+..++.||++.|.++..+|++. .|+-+...++.+ ..+....|++|.++||.-.
T Consensus 242 ~~~q~---~~~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~-~f~~eL~~~Ltg-~~ng~amLe~L~~~gLFl~ 315 (894)
T COG2909 242 SAEQS---LRGLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLS-RFNDELCNALTG-EENGQAMLEELERRGLFLQ 315 (894)
T ss_pred cHHHH---hhhccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH-HhhHHHHHHHhc-CCcHHHHHHHHHhCCCcee
Confidence 22221 1112111 1122 23556779999999999999999984 455555555544 3455567999999998652
Q ss_pred ---cCCCcEEecHHHHHHHHHHHhhcCC
Q 042739 478 ---SDRKRLQMHDLLQEMGQTIVRQESL 502 (505)
Q Consensus 478 ---~~~~~~~~H~lvr~~a~~~~~~e~~ 502 (505)
+++++|++|+++.+|.+.....+-+
T Consensus 316 ~Ldd~~~WfryH~LFaeFL~~r~~~~~~ 343 (894)
T COG2909 316 RLDDEGQWFRYHHLFAEFLRQRLQRELA 343 (894)
T ss_pred eecCCCceeehhHHHHHHHHhhhccccC
Confidence 3367899999999999999887544
No 10
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.66 E-value=1.7e-15 Score=163.50 Aligned_cols=306 Identities=16% Similarity=0.240 Sum_probs=188.2
Q ss_pred ceechhhHHHHHHhhhccC-CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe----ecccccccccHHHHHHHH
Q 042739 190 FIGINSRIEEIKSLLCLES-HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA----NVREESNKLGVIRVRDEV 264 (505)
Q Consensus 190 fvGR~~el~~l~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~----~~~~~~~~~~~~~~~~~l 264 (505)
++||+.|++.|...+.... +...++.|.|.+|||||+|++++...+.+.. +.++. ......+-..+...++++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~--~~~i~~~f~q~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQR--GYFIKGKFDQFERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccc--eeeeHhhcccccCCCchHHHHHHHHHH
Confidence 7999999999999998543 4478999999999999999999999876552 11111 111112222333344444
Q ss_pred HHHHhCCCC------------------------------------cc---CCCCc--------hHHHHhcc-CCCeEEEE
Q 042739 265 ISQVLGENL------------------------------------KV---GTLTI--------PQNIKKGL-QRMKVLIV 296 (505)
Q Consensus 265 l~~~~~~~~------------------------------------~~---~~~~~--------~~~l~~~l-~~~~~LlV 296 (505)
..++..... .. ..... ...+.... +.+|.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 443321100 00 00000 01111222 34699999
Q ss_pred EeCCCCCHH-H---HHHHhcCcC--C-CCCCCEEEEEeCcc--hhhcccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCC
Q 042739 297 LDDVHDEFT-Q---LESLAGVID--R-FSPGSRIIITTRDK--RVLDKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRS 367 (505)
Q Consensus 297 lDdv~~~~~-~---~~~l~~~l~--~-~~~~~~iliTsR~~--~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 367 (505)
+||++|.+. . ++.++.... . .......+.|.+.. .+.......+.+.|.||+..+...++........
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~--- 236 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK--- 236 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc---
Confidence 999975332 2 333333221 0 00122222233322 1122233457899999999999999988874322
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHHHhhcCC-------CHHHHHHHHHhhccCC-CccHHHHHHHhHhcCChhHHHHHhh
Q 042739 368 HDLYQLSQRVVCYADGNPLALEVLGSSLYQN-------SIQQWEDKLHNLNLIS-EPNIYKVLKISYDELNSEEKGIFLD 439 (505)
Q Consensus 368 ~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~-------~~~~~~~~l~~l~~~~-~~~l~~~l~~s~~~L~~~~~~~l~~ 439 (505)
....+....|++++.|||++++++...+... +...|......+.... .+.+...+...+++||...|.++..
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~ 316 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKA 316 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2234678899999999999999999988653 3344444443333322 1235667889999999999999999
Q ss_pred hhccCCCCCHHHHHHHHhC-CCc-hhhHHHHHhhccceEEc-----C--CC---cEEecHHHHHHHHHHHhhc
Q 042739 440 IACFFKGEDVDLLTRIQDN-PTS-MCHRLKILVGKSLIAIS-----D--RK---RLQMHDLLQEMGQTIVRQE 500 (505)
Q Consensus 440 la~f~~~~~~~~l~~l~~~-~~~-~~~~l~~L~~~sLl~~~-----~--~~---~~~~H~lvr~~a~~~~~~e 500 (505)
.||++..|+.+.|..++.. ... +...++.|....++-.. . .. +-+.|+++|+++...+.+.
T Consensus 317 AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~ 389 (849)
T COG3899 317 AACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES 389 (849)
T ss_pred HHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh
Confidence 9999999999999999985 333 33444444444444311 1 11 2277999999998766544
No 11
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.56 E-value=1.1e-12 Score=132.37 Aligned_cols=282 Identities=14% Similarity=0.089 Sum_probs=164.4
Q ss_pred CCCCCceechhhHHHHHHhhhcc--CCCceEEEEeccCcchHHHHHHHHHhhhccccc--ceEEEeecccccccccHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLE--SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQ--GNCFMANVREESNKLGVIRV 260 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~ 260 (505)
..|+.|+||+.|+++|...+... ......+.|+|++|+|||++++.+++.+....+ ..+++. + ........+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~---~~~~~~~~~ 102 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-C---QIDRTRYAI 102 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-C---CcCCCHHHH
Confidence 56788999999999999998532 233566889999999999999999998765442 223332 2 222344566
Q ss_pred HHHHHHHHhCCCCccCC--CC-chHHHHhccC--CCeEEEEEeCCCC-----CHHHHHHHhcCcCCCC-CCCEEEEEeCc
Q 042739 261 RDEVISQVLGENLKVGT--LT-IPQNIKKGLQ--RMKVLIVLDDVHD-----EFTQLESLAGVIDRFS-PGSRIIITTRD 329 (505)
Q Consensus 261 ~~~ll~~~~~~~~~~~~--~~-~~~~l~~~l~--~~~~LlVlDdv~~-----~~~~~~~l~~~l~~~~-~~~~iliTsR~ 329 (505)
+..++.++......... .. ....+.+.+. +++.+||||+++. ..+.+..+........ .+..+|.++..
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~ 182 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSD 182 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECC
Confidence 77777777652211111 11 1444555554 4578999999942 1233444443322211 13345666654
Q ss_pred chhhccc-------CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHh----cCChHHHHHHHHhh---
Q 042739 330 KRVLDKC-------EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYA----DGNPLALEVLGSSL--- 395 (505)
Q Consensus 330 ~~~~~~~-------~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~----~G~PLal~~~~~~l--- 395 (505)
....... -....+.+++++.++..+++..++...........+.++.+++.+ |..+.++..+-...
T Consensus 183 ~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 183 LTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIA 262 (394)
T ss_pred cchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 4322211 113468999999999999998876321111111233444454444 44566666554321
Q ss_pred --cC---CCHHHHHHHHHhhccCCCccHHHHHHHhHhcCChhHHHHHhhhhccC----CCCCHHHHHH----HHhC-C--
Q 042739 396 --YQ---NSIQQWEDKLHNLNLISEPNIYKVLKISYDELNSEEKGIFLDIACFF----KGEDVDLLTR----IQDN-P-- 459 (505)
Q Consensus 396 --~~---~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~----~~~~~~~l~~----l~~~-~-- 459 (505)
.+ -+...+....+.. -.......+..||...+.+|..++... ..+....+.. ++.. +
T Consensus 263 ~~~~~~~I~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~ 335 (394)
T PRK00411 263 EREGSRKVTEEDVRKAYEKS-------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE 335 (394)
T ss_pred HHcCCCCcCHHHHHHHHHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC
Confidence 11 1344444444433 123345668899999999988877553 2344433332 2221 2
Q ss_pred ----CchhhHHHHHhhccceEE
Q 042739 460 ----TSMCHRLKILVGKSLIAI 477 (505)
Q Consensus 460 ----~~~~~~l~~L~~~sLl~~ 477 (505)
....+.++.|...|||..
T Consensus 336 ~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 336 PRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred cCcHHHHHHHHHHHHhcCCeEE
Confidence 234568999999999985
No 12
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.49 E-value=5.3e-13 Score=129.65 Aligned_cols=259 Identities=14% Similarity=0.165 Sum_probs=150.9
Q ss_pred CCceechhhHHHHHHhhhcc---CCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHH
Q 042739 188 DGFIGINSRIEEIKSLLCLE---SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEV 264 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 264 (505)
..|||+++.++.|..++... ....+.+.|+|++|+|||+||+.+++.+...+. .......... ..+...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~~~~----~~l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPALEKP----GDLAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----EeccchhcCc----hhHHHH
Confidence 45999999999999988632 233556889999999999999999998754321 1110000111 111111
Q ss_pred HHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCC-CHHHHHHHhcCcC-------------------CCCCCCEEE
Q 042739 265 ISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHD-EFTQLESLAGVID-------------------RFSPGSRII 324 (505)
Q Consensus 265 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~l~-------------------~~~~~~~il 324 (505)
+..+ +...+|+||+++. .....+.+...+. ...+.+-|.
T Consensus 76 l~~~---------------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 76 LTNL---------------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred HHhc---------------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 1111 1234667777641 1122222221110 011233344
Q ss_pred EEeCcchhhccc--CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhcCCCHHH
Q 042739 325 ITTRDKRVLDKC--EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSLYQNSIQQ 402 (505)
Q Consensus 325 iTsR~~~~~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~ 402 (505)
.|++...+.... .....+.+++++.++..+++.+.+.... ....++.+..|++.|+|.|..+..++..+..
T Consensus 135 ~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~--~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~----- 207 (305)
T TIGR00635 135 ATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLN--VEIEPEAALEIARRSRGTPRIANRLLRRVRD----- 207 (305)
T ss_pred ecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHHhCCCcchHHHHHHHHHH-----
Confidence 556654322211 1234689999999999999988774322 2234567889999999999877666553310
Q ss_pred HHHHHHhhccCCCccH---HHHHHHhHhcCChhHHHHHh-hhhccCC-CCCHHHHHHHHhC-CCchhhHHH-HHhhccce
Q 042739 403 WEDKLHNLNLISEPNI---YKVLKISYDELNSEEKGIFL-DIACFFK-GEDVDLLTRIQDN-PTSMCHRLK-ILVGKSLI 475 (505)
Q Consensus 403 ~~~~l~~l~~~~~~~l---~~~l~~s~~~L~~~~~~~l~-~la~f~~-~~~~~~l~~l~~~-~~~~~~~l~-~L~~~sLl 475 (505)
...... ......+.+ ...+...+..+++..+..|. .+..+.. +++.+.+...++. .......++ .|++++||
T Consensus 208 ~a~~~~-~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li 286 (305)
T TIGR00635 208 FAQVRG-QKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFL 286 (305)
T ss_pred HHHHcC-CCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCc
Confidence 000000 000111111 11234456788888888777 4455543 4788888888887 667777788 69999999
Q ss_pred EEcCCCcE
Q 042739 476 AISDRKRL 483 (505)
Q Consensus 476 ~~~~~~~~ 483 (505)
...+.|++
T Consensus 287 ~~~~~g~~ 294 (305)
T TIGR00635 287 QRTPRGRI 294 (305)
T ss_pred ccCCchhh
Confidence 87666654
No 13
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.47 E-value=4.4e-11 Score=119.42 Aligned_cols=282 Identities=15% Similarity=0.139 Sum_probs=159.8
Q ss_pred CCCCCceechhhHHHHHHhhhc--cCCCceEEEEeccCcchHHHHHHHHHhhhccccc------ceEEEeeccccccccc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCL--ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQ------GNCFMANVREESNKLG 256 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~~ 256 (505)
..|+.|+||+.|+++|...+.. .....+.+.|+|++|+|||++++.+++.+..... ..+++. + .....
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in-~---~~~~~ 87 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN-C---QILDT 87 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE-C---CCCCC
Confidence 5567899999999999999863 1233567899999999999999999987653322 123333 2 22233
Q ss_pred HHHHHHHHHHHHhC--CCCccCCCC---chHHHHhccC--CCeEEEEEeCCCCCH-----HHHHHHhcC--cCCC-CCCC
Q 042739 257 VIRVRDEVISQVLG--ENLKVGTLT---IPQNIKKGLQ--RMKVLIVLDDVHDEF-----TQLESLAGV--IDRF-SPGS 321 (505)
Q Consensus 257 ~~~~~~~ll~~~~~--~~~~~~~~~---~~~~l~~~l~--~~~~LlVlDdv~~~~-----~~~~~l~~~--l~~~-~~~~ 321 (505)
...++..++.++.. ......... ....+.+.+. +++++||||+++ .. +.+..+... .... +...
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d-~L~~~~~~~L~~l~~~~~~~~~~~~~v 166 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEID-YLVGDDDDLLYQLSRARSNGDLDNAKV 166 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchh-hhccCCcHHHHhHhccccccCCCCCeE
Confidence 45566667776642 111111111 1334444443 568899999994 32 223333332 1111 1334
Q ss_pred EEEEEeCcchhhcccC-------CCcEEEcCCCCHhHHHHHHHHhhc---CCCCCChhHHHHHHHHHHHhcCChHHHHHH
Q 042739 322 RIIITTRDKRVLDKCE-------VSNIFEVKGLEHNKAFELFCRKAF---GQNNRSHDLYQLSQRVVCYADGNPLALEVL 391 (505)
Q Consensus 322 ~iliTsR~~~~~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~---~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 391 (505)
.+|.++........+. ....+.+++++.++..+++..++. ......+...+.+..++..+.|.|..+..+
T Consensus 167 ~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~ 246 (365)
T TIGR02928 167 GVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDL 246 (365)
T ss_pred EEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHH
Confidence 4555554432211110 124689999999999999988763 111222233345556777778998655433
Q ss_pred HHhh-----c-C---CCHHHHHHHHHhhccCCCccHHHHHHHhHhcCChhHHHHHhhhhccC----CCCCHHHHHH----
Q 042739 392 GSSL-----Y-Q---NSIQQWEDKLHNLNLISEPNIYKVLKISYDELNSEEKGIFLDIACFF----KGEDVDLLTR---- 454 (505)
Q Consensus 392 ~~~l-----~-~---~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~----~~~~~~~l~~---- 454 (505)
.... . + -+.+......... -.......+..||.+.+.++..++.+- ..+....+..
T Consensus 247 l~~a~~~a~~~~~~~it~~~v~~a~~~~-------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 247 LRVAGEIAEREGAERVTEDHVEKAQEKI-------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 3221 1 1 1333333333332 123445677899998888877766332 1233333322
Q ss_pred HHhC-C------CchhhHHHHHhhccceEEc
Q 042739 455 IQDN-P------TSMCHRLKILVGKSLIAIS 478 (505)
Q Consensus 455 l~~~-~------~~~~~~l~~L~~~sLl~~~ 478 (505)
++.. + ....+.++.|...|||+..
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 320 VCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 2221 2 2345689999999999964
No 14
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.46 E-value=4.6e-13 Score=131.04 Aligned_cols=261 Identities=16% Similarity=0.159 Sum_probs=155.2
Q ss_pred CCCCCceechhhHHHHHHhhhc---cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCL---ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVR 261 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 261 (505)
.....|+|++..++.+..++.. .....+.+.|+|++|+|||+||+.+++.+...+. .......... ..+
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~----~~~~~~~~~~----~~l 93 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR----ITSGPALEKP----GDL 93 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE----EEecccccCh----HHH
Confidence 4557799999999999888863 2233567889999999999999999998754321 1111001110 111
Q ss_pred HHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCC-CHHHHHHHhcCcC-------------------CCCCCC
Q 042739 262 DEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHD-EFTQLESLAGVID-------------------RFSPGS 321 (505)
Q Consensus 262 ~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~l~-------------------~~~~~~ 321 (505)
..++.. + +...+|+||+++. .....+.+...+. ...+.+
T Consensus 94 ~~~l~~--------------------l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~ 152 (328)
T PRK00080 94 AAILTN--------------------L-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFT 152 (328)
T ss_pred HHHHHh--------------------c-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCce
Confidence 111111 1 1244777787741 1111111111110 001223
Q ss_pred EEEEEeCcchhhccc--CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhcCCC
Q 042739 322 RIIITTRDKRVLDKC--EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSLYQNS 399 (505)
Q Consensus 322 ~iliTsR~~~~~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~ 399 (505)
-|..|++...+...+ .....+++++++.++..+++.+.+.... ....++.+..|++.|+|.|..+..+...+..
T Consensus 153 li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~-- 228 (328)
T PRK00080 153 LIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG--VEIDEEGALEIARRSRGTPRIANRLLRRVRD-- 228 (328)
T ss_pred EEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHcCCCchHHHHHHHHHHH--
Confidence 344555544322211 1234689999999999999998774322 2334567899999999999776666554321
Q ss_pred HHHHHHHHHhhccCCCcc---HHHHHHHhHhcCChhHHHHHh-hhhccC-CCCCHHHHHHHHhC-CCchhhHHH-HHhhc
Q 042739 400 IQQWEDKLHNLNLISEPN---IYKVLKISYDELNSEEKGIFL-DIACFF-KGEDVDLLTRIQDN-PTSMCHRLK-ILVGK 472 (505)
Q Consensus 400 ~~~~~~~l~~l~~~~~~~---l~~~l~~s~~~L~~~~~~~l~-~la~f~-~~~~~~~l~~l~~~-~~~~~~~l~-~L~~~ 472 (505)
|.... ......... ....+...+..|++..+..+. .+..|. .++..+.+...++. ....++.++ .|++.
T Consensus 229 ---~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 229 ---FAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQ 304 (328)
T ss_pred ---HHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHc
Confidence 11100 000111111 122344556788888888886 556665 44888999999888 666777888 99999
Q ss_pred cceEEcCCCc
Q 042739 473 SLIAISDRKR 482 (505)
Q Consensus 473 sLl~~~~~~~ 482 (505)
+||+..+.|+
T Consensus 305 ~li~~~~~gr 314 (328)
T PRK00080 305 GFIQRTPRGR 314 (328)
T ss_pred CCcccCCchH
Confidence 9998766655
No 15
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.45 E-value=6.4e-13 Score=123.86 Aligned_cols=198 Identities=19% Similarity=0.228 Sum_probs=103.2
Q ss_pred ceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHH------HH-
Q 042739 190 FIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRV------RD- 262 (505)
Q Consensus 190 fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~------~~- 262 (505)
|+||+.|+++|.+++..+ ..+.+.|+|+.|+|||+|++++.+.........+|+........ ...... ..
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 899999999999999742 35689999999999999999999988554434455443222111 111111 01
Q ss_pred --HHHHHHhCCCCc--------cCCCCchHHHHhccC--CCeEEEEEeCCCCC-------HHHHHHHhcCcCC--CCCCC
Q 042739 263 --EVISQVLGENLK--------VGTLTIPQNIKKGLQ--RMKVLIVLDDVHDE-------FTQLESLAGVIDR--FSPGS 321 (505)
Q Consensus 263 --~ll~~~~~~~~~--------~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~-------~~~~~~l~~~l~~--~~~~~ 321 (505)
..+......... .........+.+.+. +++++||||+++.- ......+...+.. .....
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 111111111100 000111333333333 24599999999521 1222333322222 13344
Q ss_pred EEEEEeCcchhhcc--------cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHH
Q 042739 322 RIIITTRDKRVLDK--------CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVL 391 (505)
Q Consensus 322 ~iliTsR~~~~~~~--------~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 391 (505)
.+++++........ .+....+.|++|+.+++.+++.........- +...+..++++..+||+|..|..+
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQEL 234 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhcC
Confidence 45555554433322 2334469999999999999998865322111 234667899999999999998753
No 16
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.36 E-value=3.2e-11 Score=115.01 Aligned_cols=181 Identities=13% Similarity=0.104 Sum_probs=106.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHh---
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKK--- 286 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~--- 286 (505)
+.+.++|+|++|+|||||++.++..+...-...+++. ........++..++..+...............+..
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999988753211122222 11233445666666555332211111111222222
Q ss_pred --ccCCCeEEEEEeCCCC-CHHHHHHHhc---CcCCCCCCCEEEEEeCcchh--hc--c---c--CCCcEEEcCCCCHhH
Q 042739 287 --GLQRMKVLIVLDDVHD-EFTQLESLAG---VIDRFSPGSRIIITTRDKRV--LD--K---C--EVSNIFEVKGLEHNK 351 (505)
Q Consensus 287 --~l~~~~~LlVlDdv~~-~~~~~~~l~~---~l~~~~~~~~iliTsR~~~~--~~--~---~--~~~~~~~l~~L~~~e 351 (505)
...+++.+||+|+++. ....++.+.. ..........|++|...... +. . . .....+.+++|+.+|
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2257789999999963 2333443322 11111223355666653311 01 0 0 113467899999999
Q ss_pred HHHHHHHhhcCCC--CCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 042739 352 AFELFCRKAFGQN--NRSHDLYQLSQRVVCYADGNPLALEVLGSSL 395 (505)
Q Consensus 352 a~~L~~~~~~~~~--~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 395 (505)
..+++...+.... .......+..+.|++.|+|+|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999987763221 1223456789999999999999999998765
No 17
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.32 E-value=1.5e-12 Score=124.33 Aligned_cols=281 Identities=21% Similarity=0.231 Sum_probs=194.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccC
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQ 289 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~ 289 (505)
..+.+.++|+|||||||++.++.+ +...|...++++++..+.++..+.......+..... +.......+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-----~g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-----PGDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhhcccccc-----cchHHHHHHHHHHh
Confidence 467999999999999999999999 888999999998877776655444433322221110 11112556777788
Q ss_pred CCeEEEEEeCCCCCHHHHHHHhcCcCCCCCCCEEEEEeCcchhhcccCCCcEEEcCCCCHh-HHHHHHHHhhcCCC---C
Q 042739 290 RMKVLIVLDDVHDEFTQLESLAGVIDRFSPGSRIIITTRDKRVLDKCEVSNIFEVKGLEHN-KAFELFCRKAFGQN---N 365 (505)
Q Consensus 290 ~~~~LlVlDdv~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~~~~~~~l~~L~~~-ea~~L~~~~~~~~~---~ 365 (505)
+++.++|+||.++-.+....+...+....+...++.|+|+.. ...+.....+++|+.. ++.++|...+.... .
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~---l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAI---LVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhh---cccccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 899999999995444445555555555566778899999752 2334556788888776 68888876652111 1
Q ss_pred CChhHHHHHHHHHHHhcCChHHHHHHHHhhcCCCHHHHHHHHHh----hccC------CCccHHHHHHHhHhcCChhHHH
Q 042739 366 RSHDLYQLSQRVVCYADGNPLALEVLGSSLYQNSIQQWEDKLHN----LNLI------SEPNIYKVLKISYDELNSEEKG 435 (505)
Q Consensus 366 ~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~~~l~~----l~~~------~~~~l~~~l~~s~~~L~~~~~~ 435 (505)
........+.+|+++.+|.|++|+.+++........+....++. +... ........+..|+.-|+..++.
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~ 243 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERA 243 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHH
Confidence 12233456788999999999999999999888766665554443 2222 1234566888999999999999
Q ss_pred HHhhhhccCCCCCHHHHHHHHhC-CC-----chhhHHHHHhhccceEEcC---CCcEEecHHHHHHHHHHHhh
Q 042739 436 IFLDIACFFKGEDVDLLTRIQDN-PT-----SMCHRLKILVGKSLIAISD---RKRLQMHDLLQEMGQTIVRQ 499 (505)
Q Consensus 436 ~l~~la~f~~~~~~~~l~~l~~~-~~-----~~~~~l~~L~~~sLl~~~~---~~~~~~H~lvr~~a~~~~~~ 499 (505)
.+..++.|...|..+........ .. .....+..|++++++...+ .-+|+.-.-.+.|+-+.+.+
T Consensus 244 ~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 244 LFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred HhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988744433332 22 2345688889999987654 22477777777777766654
No 18
>PF05729 NACHT: NACHT domain
Probab=99.22 E-value=8e-11 Score=103.42 Aligned_cols=143 Identities=20% Similarity=0.305 Sum_probs=83.6
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhccccc-----ceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHH-
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYFQ-----GNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIK- 285 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~- 285 (505)
|++.|+|.+|+|||+++..++..+..... ..+++...+..........+...+........... ...+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-----~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPI-----EELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhh-----HHHHHH
Confidence 57899999999999999999988755432 23333333333332222122222222221111100 11111
Q ss_pred hccCCCeEEEEEeCCCCCHHH---------HHH-HhcCcCC-CCCCCEEEEEeCcchh---hcccCCCcEEEcCCCCHhH
Q 042739 286 KGLQRMKVLIVLDDVHDEFTQ---------LES-LAGVIDR-FSPGSRIIITTRDKRV---LDKCEVSNIFEVKGLEHNK 351 (505)
Q Consensus 286 ~~l~~~~~LlVlDdv~~~~~~---------~~~-l~~~l~~-~~~~~~iliTsR~~~~---~~~~~~~~~~~l~~L~~~e 351 (505)
.....++++||||+++ +... +.. +...+.. ..+++++++|+|.... .........++|.+|+.++
T Consensus 76 ~~~~~~~~llilDglD-E~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLD-ELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHcCCceEEEEechH-hcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 1224679999999994 2111 111 2222222 3568999999998755 2233444689999999999
Q ss_pred HHHHHHHhh
Q 042739 352 AFELFCRKA 360 (505)
Q Consensus 352 a~~L~~~~~ 360 (505)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998765
No 19
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.21 E-value=8.2e-11 Score=112.43 Aligned_cols=93 Identities=23% Similarity=0.468 Sum_probs=80.4
Q ss_pred CCCcccEEEcccccccccchHHHHHHHHHhcCcceeeccccccCCCchhHHHHHHHhhcceEEEEecCCcccc-------
Q 042739 12 AQNKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIETTDISIIIFSKGYASS------- 84 (505)
Q Consensus 12 ~~~~~dvFisy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~~~~s------- 84 (505)
.+...||||||+..- ..-.+..|.-.|+-+||+||+|.+++..|+ |...+.+.|..++.+|.|+||+.++.
T Consensus 609 ~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC 686 (832)
T KOG3678|consen 609 LSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC 686 (832)
T ss_pred ccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence 455799999998874 334889999999999999999998998885 55788899999999999999998763
Q ss_pred -hhhHHHHHHHHHhhhhCCCeEEEEEe
Q 042739 85 -KWCLNELVKTLDCKRTNGQIVIPVFY 110 (505)
Q Consensus 85 -~~~~~El~~~~~~~~~~~~~v~pv~~ 110 (505)
+|...|+.-+++++++ |||||.
T Consensus 687 eDWVHKEl~~Afe~~KN----IiPI~D 709 (832)
T KOG3678|consen 687 EDWVHKELKCAFEHQKN----IIPIFD 709 (832)
T ss_pred HHHHHHHHHHHHHhcCC----eeeeec
Confidence 7999999999998876 999984
No 20
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.07 E-value=5e-09 Score=99.77 Aligned_cols=172 Identities=20% Similarity=0.292 Sum_probs=103.6
Q ss_pred CCceechhhH---HHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHH
Q 042739 188 DGFIGINSRI---EEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEV 264 (505)
Q Consensus 188 ~~fvGR~~el---~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 264 (505)
+.+||-+..+ .-|..++. .+......+|||+|+||||||+.++......|.. + +....-..-++.+
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~---~------sAv~~gvkdlr~i 92 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEA---L------SAVTSGVKDLREI 92 (436)
T ss_pred HHhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEE---e------ccccccHHHHHHH
Confidence 4455544433 23344443 3456778899999999999999999987666542 1 1111111222222
Q ss_pred HHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEE--EeCcchh---hcccCC
Q 042739 265 ISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIII--TTRDKRV---LDKCEV 338 (505)
Q Consensus 265 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~ili--TsR~~~~---~~~~~~ 338 (505)
+... -.....+++++|++|.+| -+..+.+.|++.+. .|.-++| ||-++.. ..-...
T Consensus 93 ~e~a---------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 93 IEEA---------------RKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSR 154 (436)
T ss_pred HHHH---------------HHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhh
Confidence 2211 122234789999999997 45667777777653 4555555 4544421 111234
Q ss_pred CcEEEcCCCCHhHHHHHHHHhhcCCCCC-----ChhHHHHHHHHHHHhcCChHHH
Q 042739 339 SNIFEVKGLEHNKAFELFCRKAFGQNNR-----SHDLYQLSQRVVCYADGNPLAL 388 (505)
Q Consensus 339 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal 388 (505)
..++++++|+.++..+++.+.+...... ....++....+++.++|--...
T Consensus 155 ~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 155 ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 5789999999999999998844211111 1123567778889998876543
No 21
>PRK06893 DNA replication initiation factor; Validated
Probab=99.05 E-value=3.8e-09 Score=97.64 Aligned_cols=155 Identities=14% Similarity=0.214 Sum_probs=94.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCC
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQR 290 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~ 290 (505)
.+.+.|+|++|+|||+|+..+++.+........|+.. .. ....... +.+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~----~~---~~~~~~~--------------------~~~~~~- 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL----SK---SQYFSPA--------------------VLENLE- 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH----HH---hhhhhHH--------------------HHhhcc-
Confidence 4578999999999999999999987655555555541 10 0000001 111112
Q ss_pred CeEEEEEeCCCC--CHHHHH-HHhcCcCCC-CCCCEEEE-EeCcc---------hhhcccCCCcEEEcCCCCHhHHHHHH
Q 042739 291 MKVLIVLDDVHD--EFTQLE-SLAGVIDRF-SPGSRIII-TTRDK---------RVLDKCEVSNIFEVKGLEHNKAFELF 356 (505)
Q Consensus 291 ~~~LlVlDdv~~--~~~~~~-~l~~~l~~~-~~~~~ili-TsR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L~ 356 (505)
+.-+|+|||++. ....++ .+...+... ..+..+|+ |+... .+.+.+.....+++++++.++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 234899999962 112222 233322222 23555544 45431 33334445568999999999999999
Q ss_pred HHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 042739 357 CRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSL 395 (505)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 395 (505)
.+.+.... -...++....|++.+.|..-.+..+...+
T Consensus 171 ~~~a~~~~--l~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 171 QRNAYQRG--IELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 98885332 23346778889999999888776665544
No 22
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.02 E-value=2.3e-08 Score=103.85 Aligned_cols=183 Identities=14% Similarity=0.144 Sum_probs=113.4
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccc-----cc----------------eE
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYF-----QG----------------NC 243 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~----------------~~ 243 (505)
...+.+||.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+-... ++ .+
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEE
Confidence 445679999999999999997432 256778999999999999999998753210 00 00
Q ss_pred EEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCE
Q 042739 244 FMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSR 322 (505)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~ 322 (505)
.+. .....+ .+.+++++.... ..-..++.-++|||+++ -+......|+..+.....+.+
T Consensus 92 EID----Aas~rg-VDdIReLIe~a~---------------~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~ 151 (830)
T PRK07003 92 EMD----AASNRG-VDEMAALLERAV---------------YAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVK 151 (830)
T ss_pred Eec----cccccc-HHHHHHHHHHHH---------------hccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeE
Confidence 000 000000 011111111110 00112345589999996 344556777776665566788
Q ss_pred EEEEeCcchhh-cc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChH-HHHH
Q 042739 323 IIITTRDKRVL-DK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPL-ALEV 390 (505)
Q Consensus 323 iliTsR~~~~~-~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~ 390 (505)
+|++|.+.... .. ......+.+.+++.++..+.+.+.+...+ .....+.+..|++.++|... +|.+
T Consensus 152 FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg--I~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 152 FILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER--IAFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred EEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 88888765322 11 23456799999999999999988763222 22345677889999998764 5444
No 23
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.01 E-value=2.5e-08 Score=100.65 Aligned_cols=182 Identities=18% Similarity=0.251 Sum_probs=109.0
Q ss_pred CCCCCceechhhHHH---HHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHH
Q 042739 185 TDLDGFIGINSRIEE---IKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVR 261 (505)
Q Consensus 185 ~~~~~fvGR~~el~~---l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 261 (505)
...+.|||++..+.. |..++.. +....+.|+|++|+||||||+.+++.....|.. +. ... .+ ...+
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~---a~~--~~-~~~i 77 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LS---AVT--SG-VKDL 77 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Ee---ccc--cc-HHHH
Confidence 344669999988766 8777753 335578899999999999999999876544321 11 011 01 1111
Q ss_pred HHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEE--eCcch--hh-cc
Q 042739 262 DEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIIT--TRDKR--VL-DK 335 (505)
Q Consensus 262 ~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliT--sR~~~--~~-~~ 335 (505)
+.++..... ....+++.+|+||+++ ....+.+.+...+. .+..++|. |.+.. +. ..
T Consensus 78 r~ii~~~~~---------------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 78 REVIEEARQ---------------RRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HHHHHHHHH---------------hhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHH
Confidence 222221110 0113467899999996 33445555655543 24444442 33321 11 11
Q ss_pred cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCC-hhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 042739 336 CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRS-HDLYQLSQRVVCYADGNPLALEVLGSSL 395 (505)
Q Consensus 336 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~-~~~~~~~~~i~~~~~G~PLal~~~~~~l 395 (505)
......+.+.+++.++..+++.+.+....... ....+....+++.|+|.+..+..+...+
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 12346789999999999999988653211111 2345678889999999998776555443
No 24
>PF14516 AAA_35: AAA-like domain
Probab=98.95 E-value=5.2e-07 Score=88.16 Aligned_cols=282 Identities=11% Similarity=0.117 Sum_probs=149.8
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccc--cccHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESN--KLGVIRVRD 262 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~~~~ 262 (505)
.+...+|.|...-+++.+.+.. ....+.|.|+-.+|||+|..++.+.....--..+++ ++..... ......+++
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~i-d~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYI-DLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEE-EeecCCCcccCCHHHHHH
Confidence 5666788999666666666642 245899999999999999999998876542233343 3443322 234444444
Q ss_pred HHHHHHhCCCC---c--------cCCCCc-hHHHHhc-c--CCCeEEEEEeCCC---CCHHHHHHHhcCc----CCCC--
Q 042739 263 EVISQVLGENL---K--------VGTLTI-PQNIKKG-L--QRMKVLIVLDDVH---DEFTQLESLAGVI----DRFS-- 318 (505)
Q Consensus 263 ~ll~~~~~~~~---~--------~~~~~~-~~~l~~~-l--~~~~~LlVlDdv~---~~~~~~~~l~~~l----~~~~-- 318 (505)
.++..+...-. . ...... ...+.+. + .+++++|+||+++ +.......+...+ ....
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 44443322111 0 111111 2223332 2 2589999999994 1111112222211 1000
Q ss_pred ---CCCEEEEEeCcc-hhhc-----ccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHH
Q 042739 319 ---PGSRIIITTRDK-RVLD-----KCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALE 389 (505)
Q Consensus 319 ---~~~~iliTsR~~-~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 389 (505)
...++++....+ .... ..+....++|++++.+|+..|+..+... ......++|...+||+|..+.
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHHHHH
Confidence 112233322211 1111 1123457899999999999999876521 112338899999999999999
Q ss_pred HHHHhhcCC--CHHHHHHHHHhhccCCCccHHHHHHHhHhcC--ChhHHHHHhhhhccCCCCCHHHHHHHHhCCCchhhH
Q 042739 390 VLGSSLYQN--SIQQWEDKLHNLNLISEPNIYKVLKISYDEL--NSEEKGIFLDIACFFKGEDVDLLTRIQDNPTSMCHR 465 (505)
Q Consensus 390 ~~~~~l~~~--~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L--~~~~~~~l~~la~f~~~~~~~~l~~l~~~~~~~~~~ 465 (505)
.++..+... +.++......... ..-..-++.-+..| .++.+.++..+-.-...+ . .....
T Consensus 238 ~~~~~l~~~~~~~~~l~~~a~~~~----~~~~~hL~~l~~~L~~~~~L~~~~~~il~~~~~~-----------~-~~~~~ 301 (331)
T PF14516_consen 238 KACYLLVEEQITLEQLLEEAITDN----GIYNDHLDRLLDRLQQNPELLEAYQQILFSGEPV-----------D-LDSDD 301 (331)
T ss_pred HHHHHHHHccCcHHHHHHHHHHhc----ccHHHHHHHHHHHHccCHHHHHHHHHHHhCCCCc-----------c-cChHH
Confidence 999998663 3322222111111 11122233333333 223333333222111111 1 12245
Q ss_pred HHHHhhccceEEcCCCcEEe-cHHHHHHH
Q 042739 466 LKILVGKSLIAISDRKRLQM-HDLLQEMG 493 (505)
Q Consensus 466 l~~L~~~sLl~~~~~~~~~~-H~lvr~~a 493 (505)
...|...|||... ++.+.+ -++-|+|-
T Consensus 302 ~~~L~~~GLV~~~-~~~~~~~n~iY~~yF 329 (331)
T PF14516_consen 302 IYKLESLGLVKRD-GNQLEVRNPIYRQYF 329 (331)
T ss_pred HHHHHHCCeEEEe-CCEEEEEcHHHHHHh
Confidence 7889999999998 555544 45656553
No 25
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.95 E-value=2.3e-08 Score=89.07 Aligned_cols=182 Identities=17% Similarity=0.181 Sum_probs=101.5
Q ss_pred CCCCCceechhhHHHHHHhhhc---cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCL---ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVR 261 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 261 (505)
...+.|||-++.+..+.-++.. .......+.+|||+|+||||||.-+++.....|. +.. ........++..
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g~~i~k~~dl~~-- 94 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-GPAIEKAGDLAA-- 94 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-CCC--SCHHHHH--
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-chhhhhHHHHHH--
Confidence 4567899999999988766652 2234678899999999999999999999876653 111 111111111111
Q ss_pred HHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCC--------CCC----------CE
Q 042739 262 DEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRF--------SPG----------SR 322 (505)
Q Consensus 262 ~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~--------~~~----------~~ 322 (505)
+ ...+. ++.+|++|.+| -+..+-+.|.+.+... +++ ..
T Consensus 95 --i--------------------l~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 95 --I--------------------LTNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp --H--------------------HHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred --H--------------------HHhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 1 11122 34588899997 3444444444433211 111 12
Q ss_pred -EEEEeCcchhhcccC--CCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhcC
Q 042739 323 -IIITTRDKRVLDKCE--VSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSLYQ 397 (505)
Q Consensus 323 -iliTsR~~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~ 397 (505)
|=.|||...+...+. ..-..+++..+.+|-.+++.+.+.. ..-+..++.+.+|+++|.|-|.-..-+.+.++.
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~--l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI--LNIEIDEDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHC--TT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHH--hCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 234777654433332 2234689999999999999876632 223455788999999999999877666655543
No 26
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.94 E-value=2.2e-08 Score=92.79 Aligned_cols=177 Identities=18% Similarity=0.278 Sum_probs=104.8
Q ss_pred CCCcee--chhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHH
Q 042739 187 LDGFIG--INSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEV 264 (505)
Q Consensus 187 ~~~fvG--R~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 264 (505)
.+.|++ .+..++.+.+++.. ...+.+.|+|++|+|||+||..+++.........+++. +..... ....+
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~------~~~~~ 84 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQ------ADPEV 84 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHH------hHHHH
Confidence 445663 44567777777642 34678999999999999999999987654433334443 211110 00111
Q ss_pred HHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCC---CHHHHHHHhcCcCC-CCCCCEEEEEeCcchh--------
Q 042739 265 ISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHD---EFTQLESLAGVIDR-FSPGSRIIITTRDKRV-------- 332 (505)
Q Consensus 265 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~---~~~~~~~l~~~l~~-~~~~~~iliTsR~~~~-------- 332 (505)
+ ..+.+ .-+|||||++. .....+.+...+.. ...+..+|+|++....
T Consensus 85 ~--------------------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~ 143 (226)
T TIGR03420 85 L--------------------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPD 143 (226)
T ss_pred H--------------------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHH
Confidence 1 11122 23899999951 11123333332221 1234578888875421
Q ss_pred -hcccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 042739 333 -LDKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSL 395 (505)
Q Consensus 333 -~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 395 (505)
...+.....+++++++.++...++...+.... ....++..+.|.+.+.|+|..+..+...+
T Consensus 144 L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~--~~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 144 LRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG--LQLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 11222245799999999999999987652222 22345667888889999999988776543
No 27
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.93 E-value=7.5e-08 Score=95.04 Aligned_cols=203 Identities=12% Similarity=0.090 Sum_probs=110.6
Q ss_pred CCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccc-cc-eEEEeecccccc-cccHHHHHH
Q 042739 186 DLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYF-QG-NCFMANVREESN-KLGVIRVRD 262 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~-~~~~~~~~~~~~-~~~~~~~~~ 262 (505)
..+.++|++..++.|.+++.. +..+.+.|+|++|+|||++|..+++.+.... .. .+++. ...... .........
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~ 89 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDS--PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQGKKYLVEDP 89 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhcchhhhhcCc
Confidence 346689999999999998864 2344688999999999999999998765332 21 12222 111100 000000000
Q ss_pred HHHHHHhCC-CCccCCCCchHHHH-h---c--cCCCeEEEEEeCCCC-CHHHHHHHhcCcCCCCCCCEEEEEeCcch-hh
Q 042739 263 EVISQVLGE-NLKVGTLTIPQNIK-K---G--LQRMKVLIVLDDVHD-EFTQLESLAGVIDRFSPGSRIIITTRDKR-VL 333 (505)
Q Consensus 263 ~ll~~~~~~-~~~~~~~~~~~~l~-~---~--l~~~~~LlVlDdv~~-~~~~~~~l~~~l~~~~~~~~iliTsR~~~-~~ 333 (505)
......... .......+....+. . . ....+-+|||||++. .......+...+......+++|+|+.... ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCc
Confidence 000000000 00000001111111 1 1 113345899999952 22334444444443445677888775432 22
Q ss_pred ccc-CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHH
Q 042739 334 DKC-EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGS 393 (505)
Q Consensus 334 ~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 393 (505)
..+ .....+++.+++.++..+++...+...+. .-..+.+..+++.++|++-.+.....
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~al~~l~~~~~gdlr~l~~~l~ 228 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV--DYDDDGLELIAYYAGGDLRKAILTLQ 228 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 211 23457899999999999999887632221 23456788899999999777654443
No 28
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.93 E-value=1.1e-07 Score=99.50 Aligned_cols=279 Identities=12% Similarity=0.081 Sum_probs=141.8
Q ss_pred CCCCCceechhhHHHHHHhhhc---cCCCceEEEEeccCcchHHHHHHHHHhhhccc-----cc-c-eEEEeeccccccc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCL---ESHDARIVGIWGMGGIGKTTIASVVFHQISRY-----FQ-G-NCFMANVREESNK 254 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~-~-~~~~~~~~~~~~~ 254 (505)
..|+.+.||+.|+++|...|.. +.+...++.|+|++|.|||+.++.+..++... .+ . .+++. +...
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-Cm~L--- 827 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-GMNV--- 827 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-CCcc---
Confidence 5678899999999999998863 22334577899999999999999999876432 12 1 23333 2222
Q ss_pred ccHHHHHHHHHHHHhCCCCccC--CCCchHHHHhccC---CCeEEEEEeCCCC----CHHHHHHHhcCcCCCCCCCEEEE
Q 042739 255 LGVIRVRDEVISQVLGENLKVG--TLTIPQNIKKGLQ---RMKVLIVLDDVHD----EFTQLESLAGVIDRFSPGSRIII 325 (505)
Q Consensus 255 ~~~~~~~~~ll~~~~~~~~~~~--~~~~~~~l~~~l~---~~~~LlVlDdv~~----~~~~~~~l~~~l~~~~~~~~ili 325 (505)
.....++..+..++.+...... .......+...+. +...+||||+++. ..+.+-.|..... ..+++|++
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiL 905 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVL 905 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEE
Confidence 2333444445555543322111 1111334444332 2346999999941 1122222222211 23444433
Q ss_pred --EeCcchh--------hcccCCCcEEEcCCCCHhHHHHHHHHhhcCCC-CCCh-hHHHHHHHHHHHhcCC-hHHHHHHH
Q 042739 326 --TTRDKRV--------LDKCEVSNIFEVKGLEHNKAFELFCRKAFGQN-NRSH-DLYQLSQRVVCYADGN-PLALEVLG 392 (505)
Q Consensus 326 --TsR~~~~--------~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~-~~~~~~~~i~~~~~G~-PLal~~~~ 392 (505)
++..... ...+ ....+..+|++.++..+++..++.... ...+ ..+-+++.++ ...|- =.||.++-
T Consensus 906 IGISNdlDLperLdPRLRSRL-g~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA-q~SGDARKALDILR 983 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRL-AFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA-NVSGDIRKALQICR 983 (1164)
T ss_pred EEecCchhcchhhhhhhhhcc-ccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh-hcCCHHHHHHHHHH
Confidence 3332211 1111 123467799999999999998884221 1122 2222222222 33333 34444433
Q ss_pred HhhcC--C---CHHHHHHHHHhhccCCCccHHHHHHHhHhcCChhHHHHHhhhhccCC-----CCCHHHH----HHHHh-
Q 042739 393 SSLYQ--N---SIQQWEDKLHNLNLISEPNIYKVLKISYDELNSEEKGIFLDIACFFK-----GEDVDLL----TRIQD- 457 (505)
Q Consensus 393 ~~l~~--~---~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~-----~~~~~~l----~~l~~- 457 (505)
..... . .......+...+ ....+...+..||.+.+.+|..+..... .+....+ ..++.
T Consensus 984 rAgEikegskVT~eHVrkAleei-------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~ 1056 (1164)
T PTZ00112 984 KAFENKRGQKIVPRDITEATNQL-------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVET 1056 (1164)
T ss_pred HHHhhcCCCccCHHHHHHHHHHH-------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHh
Confidence 33211 1 112222222211 1223445567899888887775543322 1322211 22222
Q ss_pred ------C-CC--chhhHHHHHhhccceEEc
Q 042739 458 ------N-PT--SMCHRLKILVGKSLIAIS 478 (505)
Q Consensus 458 ------~-~~--~~~~~l~~L~~~sLl~~~ 478 (505)
. .. .+.+.|.+|...|+|...
T Consensus 1057 ~Gk~iGv~plTqRV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1057 SGKYIGMCSNNELFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred hhhhcCCCCcHHHHHHHHHHHHhcCeEEec
Confidence 1 11 245578999999998764
No 29
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=2.2e-07 Score=91.37 Aligned_cols=197 Identities=12% Similarity=0.079 Sum_probs=114.8
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccc--cceEE---EeecccccccccHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYF--QGNCF---MANVREESNKLGVIR 259 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~---~~~~~~~~~~~~~~~ 259 (505)
.....++|.+...+.|.+.+..+. -...+.++|+.|+||++||..+++.+-.+- ..... ...+. .... ..
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~---c~ 90 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPD---HP 90 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCC---Ch
Confidence 455679999999999999987432 256788999999999999999998753211 10000 00000 0000 00
Q ss_pred HHHHHHHHHhCC-------CCccC---CCCc-hHHHH---hccC-----CCeEEEEEeCCC-CCHHHHHHHhcCcCCCCC
Q 042739 260 VRDEVISQVLGE-------NLKVG---TLTI-PQNIK---KGLQ-----RMKVLIVLDDVH-DEFTQLESLAGVIDRFSP 319 (505)
Q Consensus 260 ~~~~ll~~~~~~-------~~~~~---~~~~-~~~l~---~~l~-----~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~ 319 (505)
..+.+.....+. ..... .... ++.++ +.+. +.+.++|||+++ .+......|+..+.....
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 111111110000 00000 0111 23332 2222 457799999996 456667777777765556
Q ss_pred CCEEEEEeCcch-hhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHH
Q 042739 320 GSRIIITTRDKR-VLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLG 392 (505)
Q Consensus 320 ~~~iliTsR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 392 (505)
++.+|++|.+.. +... ......+.+.+++.++..+++...... .. .+....++..++|+|+....+.
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 666777666553 2222 234568999999999999999876411 11 1223678999999998665543
No 30
>PLN03025 replication factor C subunit; Provisional
Probab=98.90 E-value=1.2e-07 Score=92.41 Aligned_cols=187 Identities=14% Similarity=0.196 Sum_probs=109.5
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcc-cccceEEEeecccccccccHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISR-YFQGNCFMANVREESNKLGVIRVRDE 263 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~ 263 (505)
.....++|.+..++.|..++.. +..+.+.++|++|+||||+|..+++.+.. .|...+.-.+ .+...+ ....++
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~~~-~~~vr~ 83 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARD--GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDDRG-IDVVRN 83 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---cccccc-HHHHHH
Confidence 3445689999999999888763 23445779999999999999999988632 2321111111 111111 112223
Q ss_pred HHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-hhhccc-CCCc
Q 042739 264 VISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK-RVLDKC-EVSN 340 (505)
Q Consensus 264 ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~-~~~~ 340 (505)
.+.......... ..++.-++|||+++ -+......+...+...+..+++++++... .+...+ ....
T Consensus 84 ~i~~~~~~~~~~------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 84 KIKMFAQKKVTL------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHHhccccC------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 322211110000 01346699999995 23334445554444445567777766443 221111 1235
Q ss_pred EEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHH
Q 042739 341 IFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVL 391 (505)
Q Consensus 341 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 391 (505)
.+++.+++.++..+.+...+...+. ....+....|++.++|....+...
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi--~i~~~~l~~i~~~~~gDlR~aln~ 200 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKV--PYVPEGLEAIIFTADGDMRQALNN 200 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 7899999999999999887733221 223567889999999987655433
No 31
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=2.5e-07 Score=91.71 Aligned_cols=184 Identities=15% Similarity=0.142 Sum_probs=111.5
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccc-----cc----------------eE
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYF-----QG----------------NC 243 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~----------------~~ 243 (505)
.....++|-+..++.|.+.+..+ .-.+.+.++|++|+||||+|+.+++.+.... ++ ..
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLI 91 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceE
Confidence 44567899999999999988743 2356788999999999999999998763211 00 00
Q ss_pred EEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCE
Q 042739 244 FMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSR 322 (505)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~ 322 (505)
.+. ...... ....++++..+.. .-..++.-++|||+++ -+......++..+...+....
T Consensus 92 ~~~----~~~~~~-v~~ir~i~~~~~~---------------~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~ 151 (363)
T PRK14961 92 EID----AASRTK-VEEMREILDNIYY---------------SPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIK 151 (363)
T ss_pred Eec----ccccCC-HHHHHHHHHHHhc---------------CcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 000 000000 1111111111100 0012345699999995 233345667766665556677
Q ss_pred EEEEeCcch-hhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHH
Q 042739 323 IIITTRDKR-VLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVL 391 (505)
Q Consensus 323 iliTsR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 391 (505)
+|++|.+.. +... ......+++.+++.++..+.+...+...+ ....++.+..|++.++|.|..+...
T Consensus 152 fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g--~~i~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 152 FILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES--IDTDEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred EEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 777765442 2222 12346799999999999999887663322 1223466788999999998754433
No 32
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.8e-07 Score=90.43 Aligned_cols=280 Identities=15% Similarity=0.205 Sum_probs=162.9
Q ss_pred CCCCCceechhhHHHHHHhhhc--cCCCceEEEEeccCcchHHHHHHHHHhhhcccccce--EEEeecccccccccHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCL--ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGN--CFMANVREESNKLGVIRV 260 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~~~~~~~~~~~~~~~~ 260 (505)
..|+.+.+|+.+++++...|.. ....+.-+.|+|++|.|||+.++.+++++....... ++++ + ........+
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN-c---~~~~t~~~i 89 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN-C---LELRTPYQV 89 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe-e---eeCCCHHHH
Confidence 4556699999999999998863 222344589999999999999999999987664433 4444 3 334455666
Q ss_pred HHHHHHHHhCCCC-ccCCCCchHHHHhccC--CCeEEEEEeCCC----CCHHHHHHHhcCcCCCCCCCEE--EEEeCcch
Q 042739 261 RDEVISQVLGENL-KVGTLTIPQNIKKGLQ--RMKVLIVLDDVH----DEFTQLESLAGVIDRFSPGSRI--IITTRDKR 331 (505)
Q Consensus 261 ~~~ll~~~~~~~~-~~~~~~~~~~l~~~l~--~~~~LlVlDdv~----~~~~~~~~l~~~l~~~~~~~~i--liTsR~~~ 331 (505)
+..++..+...+. +....+....+.+.+. ++.+++|||++. .+.+.+-.|....... .++| |..+-+..
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~ 167 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHH
Confidence 6677777653332 2222233555666555 478999999993 1112333443332222 3333 33333222
Q ss_pred h--------hcccCCCcEEEcCCCCHhHHHHHHHHhh---cCCCCCChhHHHHHHHHHHHhcCCh-HHHHHHHHh--hcC
Q 042739 332 V--------LDKCEVSNIFEVKGLEHNKAFELFCRKA---FGQNNRSHDLYQLSQRVVCYADGNP-LALEVLGSS--LYQ 397 (505)
Q Consensus 332 ~--------~~~~~~~~~~~l~~L~~~ea~~L~~~~~---~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~~~~--l~~ 397 (505)
. .+.++ ...+..+|.+.+|-.+.+..++ |......+..-+++..++...+|-. .||..+-.. +++
T Consensus 168 ~~~~ld~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe 246 (366)
T COG1474 168 FLDYLDPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAE 246 (366)
T ss_pred HHHHhhhhhhhccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 1 12222 2348899999999999998877 3344444444555556666666532 233222211 111
Q ss_pred C------CHHHHHHHHHhhccCCCccHHHHHHHhHhcCChhHHHHHhhhhccCCCCCHH----HHHHHHhC-CC---chh
Q 042739 398 N------SIQQWEDKLHNLNLISEPNIYKVLKISYDELNSEEKGIFLDIACFFKGEDVD----LLTRIQDN-PT---SMC 463 (505)
Q Consensus 398 ~------~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~~~----~l~~l~~~-~~---~~~ 463 (505)
. +.+........ .-.......+..|+.+.+..+..++....++... ....++.. .. ...
T Consensus 247 ~~~~~~v~~~~v~~a~~~-------~~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~~ 319 (366)
T COG1474 247 REGSRKVSEDHVREAQEE-------IERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRFS 319 (366)
T ss_pred hhCCCCcCHHHHHHHHHH-------hhHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHHH
Confidence 0 11111111000 0123445568899999888877776664444443 33444444 44 455
Q ss_pred hHHHHHhhccceEEc
Q 042739 464 HRLKILVGKSLIAIS 478 (505)
Q Consensus 464 ~~l~~L~~~sLl~~~ 478 (505)
+.++.|...|++...
T Consensus 320 ~ii~~L~~lgiv~~~ 334 (366)
T COG1474 320 DIISELEGLGIVSAS 334 (366)
T ss_pred HHHHHHHhcCeEEee
Confidence 789999999999853
No 33
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.88 E-value=1.8e-07 Score=99.32 Aligned_cols=189 Identities=13% Similarity=0.120 Sum_probs=116.8
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccccc-c--eEEEee-cc-----------
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQ-G--NCFMAN-VR----------- 249 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~--~~~~~~-~~----------- 249 (505)
.....+||-+..+..|.+++..+. -.+.+.++|+.|+||||+|+.+++.+-.... . .|..+. +.
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 445679999999999999986432 2556689999999999999999988643210 0 000000 00
Q ss_pred ccccc-ccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEe
Q 042739 250 EESNK-LGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITT 327 (505)
Q Consensus 250 ~~~~~-~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTs 327 (505)
..... ..-...+++++..+. ..-..++.-++|||+++ .+......|+..+......+++|++|
T Consensus 92 EidAas~~kVDdIReLie~v~---------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaT 156 (944)
T PRK14949 92 EVDAASRTKVDDTRELLDNVQ---------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLAT 156 (944)
T ss_pred EeccccccCHHHHHHHHHHHH---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEEC
Confidence 00000 000111122221110 01123566799999997 45667788887777656677777766
Q ss_pred Ccc-hhhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHH
Q 042739 328 RDK-RVLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVL 391 (505)
Q Consensus 328 R~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 391 (505)
.+. .+... ......+++.+|+.++..+.+.+.+.... .....+.+..|++.++|.|.-+..+
T Consensus 157 Te~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 157 TDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 554 22222 22356899999999999999988763221 2234567888999999999755443
No 34
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=1.5e-07 Score=96.42 Aligned_cols=190 Identities=15% Similarity=0.125 Sum_probs=112.7
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcc--cccceEEEeecccccccccHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISR--YFQGNCFMANVREESNKLGVIRVRD 262 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~~~ 262 (505)
...+.++|-+...+.|..++..+. -.+.+.++|++|+||||+|+.+++.+.. .....++.+... .
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc------------~ 77 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC------------L 77 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh------------H
Confidence 344568999999999999887432 3566799999999999999999987632 122223322100 0
Q ss_pred HHHHHHhCCC-----CccCCCCchHHHHhc-----cCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-
Q 042739 263 EVISQVLGEN-----LKVGTLTIPQNIKKG-----LQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK- 330 (505)
Q Consensus 263 ~ll~~~~~~~-----~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~- 330 (505)
.+.......- ......+....+++. ..+++-++|||+++ .+...+..++..+......+.+|+++...
T Consensus 78 ~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~ 157 (504)
T PRK14963 78 AVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPE 157 (504)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChh
Confidence 0000000000 000000111122221 12456689999995 34455667777666545555666655433
Q ss_pred hhhccc-CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHH
Q 042739 331 RVLDKC-EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALE 389 (505)
Q Consensus 331 ~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 389 (505)
.+...+ .....+++.+++.++..+++.+.+...+. ....+.+..|++.++|.+.-+.
T Consensus 158 kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi--~i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 158 KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR--EAEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred hCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 222222 23567999999999999999887733221 2245678889999999997664
No 35
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.87 E-value=1.6e-07 Score=91.98 Aligned_cols=187 Identities=17% Similarity=0.152 Sum_probs=110.0
Q ss_pred CCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHH
Q 042739 186 DLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVI 265 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll 265 (505)
....++|++..++.+..++.. +..+.+.|+|++|+|||++++.++..+........++. +. .+.... .....+.+
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~--~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~~~~-~~~~~~~i 89 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKE--KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASDERG-IDVIRNKI 89 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-cccccc-hHHHHHHH
Confidence 335689999999999999864 23445799999999999999999988643221111111 10 011111 11111222
Q ss_pred HHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcch-hhcc-cCCCcEE
Q 042739 266 SQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDKR-VLDK-CEVSNIF 342 (505)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~~-~~~~-~~~~~~~ 342 (505)
........ .....+-++++|+++ -..+....+...+......+.+|+++.... .... ......+
T Consensus 90 ~~~~~~~~-------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 90 KEFARTAP-------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred HHHHhcCC-------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 22111000 001235689999994 223344455555554455677777764331 1111 1223468
Q ss_pred EcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHH
Q 042739 343 EVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLG 392 (505)
Q Consensus 343 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 392 (505)
++.+++.++...++...+...+. ...++.+..+++.++|.+.-+....
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~--~i~~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGI--EITDDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999887733222 2335678889999999988754433
No 36
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.87 E-value=3.8e-09 Score=94.56 Aligned_cols=50 Identities=26% Similarity=0.452 Sum_probs=35.7
Q ss_pred CceechhhHHHHHHhhh-ccCCCceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 189 GFIGINSRIEEIKSLLC-LESHDARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 189 ~fvGR~~el~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.|+||+.++++|...|. ......+.+.|+|++|+|||+|+.+++..+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38999999999999994 233447899999999999999999999988776
No 37
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.87 E-value=2.6e-08 Score=92.25 Aligned_cols=176 Identities=15% Similarity=0.212 Sum_probs=100.4
Q ss_pred CCCCCce-echhhH-HHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHH
Q 042739 185 TDLDGFI-GINSRI-EEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRD 262 (505)
Q Consensus 185 ~~~~~fv-GR~~el-~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 262 (505)
...++|+ |.+.+. ..+.++.. .....+.+.|+|++|+|||+||..+++.....-....++. .... ..
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~-~~~~------~~--- 83 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD-AASP------LL--- 83 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-hHHh------HH---
Confidence 3345566 554444 44444443 2233568899999999999999999987643323334443 1110 00
Q ss_pred HHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCC-CHHHHHHHhcCcCCC-CCCC-EEEEEeCcchhhc-----
Q 042739 263 EVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHD-EFTQLESLAGVIDRF-SPGS-RIIITTRDKRVLD----- 334 (505)
Q Consensus 263 ~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~l~~~-~~~~-~iliTsR~~~~~~----- 334 (505)
. + ... ...-+||+||++. +......+...+... ..+. .+|+|++......
T Consensus 84 ~-~--------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~ 141 (227)
T PRK08903 84 A-F--------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLRED 141 (227)
T ss_pred H-H--------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHH
Confidence 0 0 001 1233789999951 222233333333211 1233 3666666432111
Q ss_pred ---ccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 042739 335 ---KCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSL 395 (505)
Q Consensus 335 ---~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 395 (505)
.+.....+++++++.++-..++.+...... ....++....+++.+.|++..+..+...+
T Consensus 142 L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 142 LRTRLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 222346899999999988777776542211 22345778889999999999998777654
No 38
>PRK08727 hypothetical protein; Validated
Probab=98.87 E-value=7.2e-08 Score=89.35 Aligned_cols=176 Identities=13% Similarity=0.163 Sum_probs=101.2
Q ss_pred CCCCCceechhh-HHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHH
Q 042739 185 TDLDGFIGINSR-IEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDE 263 (505)
Q Consensus 185 ~~~~~fvGR~~e-l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 263 (505)
...++|++.... +..+..... ......+.|+|++|+|||+|+..+++..........|+. ... ....+.+
T Consensus 16 ~~f~~f~~~~~n~~~~~~~~~~--~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~~------~~~~~~~ 86 (233)
T PRK08727 16 QRFDSYIAAPDGLLAQLQALAA--GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQA------AAGRLRD 86 (233)
T ss_pred CChhhccCCcHHHHHHHHHHHh--ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HHH------hhhhHHH
Confidence 344567765543 333333332 122456999999999999999999988765544445554 111 1111111
Q ss_pred HHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCC---CHHHHHHHhcCcCCC-CCCCEEEEEeCcch--------
Q 042739 264 VISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHD---EFTQLESLAGVIDRF-SPGSRIIITTRDKR-------- 331 (505)
Q Consensus 264 ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~---~~~~~~~l~~~l~~~-~~~~~iliTsR~~~-------- 331 (505)
.+. .+. +.-+|||||++. .......+...+... ..+..+|+|++...
T Consensus 87 ~~~--------------------~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~ 145 (233)
T PRK08727 87 ALE--------------------ALE-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLP 145 (233)
T ss_pred HHH--------------------HHh-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhH
Confidence 111 111 224899999951 122222333322211 24667999998642
Q ss_pred -hhcccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHH
Q 042739 332 -VLDKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLG 392 (505)
Q Consensus 332 -~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 392 (505)
+.+.+.....+++++++.++-.+++.+++.... -.-.++....|++.++|-.-.+..+.
T Consensus 146 dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~--l~l~~e~~~~La~~~~rd~r~~l~~L 205 (233)
T PRK08727 146 DLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG--LALDEAAIDWLLTHGERELAGLVALL 205 (233)
T ss_pred HHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 122223356899999999999999998663222 22345677888888887766654333
No 39
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=1.7e-07 Score=96.27 Aligned_cols=199 Identities=12% Similarity=0.098 Sum_probs=114.0
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccce-EEEeecccccccccHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGN-CFMANVREESNKLGVIRVRDE 263 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~ 263 (505)
...+.+||-+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+-..-+.. --.. ..+.+.......
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-----~~PCG~C~sC~~ 86 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-----AQPCGQCRACTE 86 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-----CCCCcccHHHHH
Confidence 445678999999999999997432 256778999999999999999998753210000 0000 000000000000
Q ss_pred HHHHHhCCCCcc-----CCCCchHHHHhc-----cCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-h
Q 042739 264 VISQVLGENLKV-----GTLTIPQNIKKG-----LQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK-R 331 (505)
Q Consensus 264 ll~~~~~~~~~~-----~~~~~~~~l~~~-----l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~-~ 331 (505)
+...-......+ ...+.+..+.+. ..++.-++|||+++ .+......|+..+.....++.+|++|.+. .
T Consensus 87 I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 87 IDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred HHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 000000000000 001111111111 13456699999996 45566777887777656677766666544 3
Q ss_pred hhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHH
Q 042739 332 VLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVL 391 (505)
Q Consensus 332 ~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 391 (505)
+... ......+.+.+++.++..+.+.+.+...+ .....+.+..|++.++|.|.-...+
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg--i~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG--IAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3222 12346799999999999999887663222 1223456678999999999754433
No 40
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.86 E-value=6.2e-08 Score=88.70 Aligned_cols=187 Identities=14% Similarity=0.212 Sum_probs=104.1
Q ss_pred CCc-eechhhH-HHHHHhhhccC-CCceEEEEeccCcchHHHHHHHHHhhhcccccc--eEEEeecccccccccHHHHHH
Q 042739 188 DGF-IGINSRI-EEIKSLLCLES-HDARIVGIWGMGGIGKTTIASVVFHQISRYFQG--NCFMANVREESNKLGVIRVRD 262 (505)
Q Consensus 188 ~~f-vGR~~el-~~l~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~~ 262 (505)
++| +|-..++ -.....+.... .....+.|+|+.|+|||.|+..+++.+...++. ++++. ...+..
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~ 77 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIR 77 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHH
Confidence 445 4654332 23333333322 234568899999999999999999987655442 33332 223333
Q ss_pred HHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC--CCHH-HHHHHhcCcCCC-CCCCEEEEEeCcchh------
Q 042739 263 EVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH--DEFT-QLESLAGVIDRF-SPGSRIIITTRDKRV------ 332 (505)
Q Consensus 263 ~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~-~~~~l~~~l~~~-~~~~~iliTsR~~~~------ 332 (505)
.+...+.. .....+++.+++- =+|+|||++ .... ..+.+...+... ..|.++|+|+.....
T Consensus 78 ~~~~~~~~--------~~~~~~~~~~~~~-DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~ 148 (219)
T PF00308_consen 78 EFADALRD--------GEIEEFKDRLRSA-DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLL 148 (219)
T ss_dssp HHHHHHHT--------TSHHHHHHHHCTS-SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-
T ss_pred HHHHHHHc--------ccchhhhhhhhcC-CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccC
Confidence 33333222 1134455555533 388999995 2222 223333322211 357789999965421
Q ss_pred ---hcccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 042739 333 ---LDKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSL 395 (505)
Q Consensus 333 ---~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 395 (505)
.+.+...-.++|.+++.++-.+++.+.+.... ....++.+..|++.+.+..-.|..+...|
T Consensus 149 ~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~--~~l~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 149 PDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG--IELPEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred hhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 12233456899999999999999998883322 22456778888888888877776655443
No 41
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.85 E-value=7.2e-08 Score=89.46 Aligned_cols=176 Identities=14% Similarity=0.212 Sum_probs=100.9
Q ss_pred CCce-echh-hHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHH
Q 042739 188 DGFI-GINS-RIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVI 265 (505)
Q Consensus 188 ~~fv-GR~~-el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll 265 (505)
++|+ |-.. .+..+.++... .+.+.+.|+|++|+|||+|+..+++..........|+. +... .....++
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~------~~~~~~~- 91 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKR------AWFVPEV- 91 (235)
T ss_pred cccccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHH------hhhhHHH-
Confidence 4555 6333 34444444432 23468899999999999999999987654433334443 1110 0000111
Q ss_pred HHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCC---CHHHHHHHhcCcCCC--CCCCEEEEEeCcch---------
Q 042739 266 SQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHD---EFTQLESLAGVIDRF--SPGSRIIITTRDKR--------- 331 (505)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~---~~~~~~~l~~~l~~~--~~~~~iliTsR~~~--------- 331 (505)
.+.+.+ --+|+|||++. ....-+.+...+... ....++|+||+...
T Consensus 92 -------------------~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~ 151 (235)
T PRK08084 92 -------------------LEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPD 151 (235)
T ss_pred -------------------HHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHH
Confidence 111111 13799999951 122222222222211 22347999998652
Q ss_pred hhcccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 042739 332 VLDKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSL 395 (505)
Q Consensus 332 ~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 395 (505)
+.+.+....++++.+++.++-.+++.+.+.... -.-.++....|++.+.|..-.+..+...+
T Consensus 152 L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 152 LASRLDWGQIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 223334556899999999999999987663221 23346788889999998887776655443
No 42
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=1.8e-07 Score=96.37 Aligned_cols=182 Identities=14% Similarity=0.107 Sum_probs=113.5
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccccc---------------------ceE
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQ---------------------GNC 243 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~~ 243 (505)
.....+||.+...+.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+-.... ..+
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDvi 90 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLI 90 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceE
Confidence 445678999999999999997432 2568899999999999999999987532110 001
Q ss_pred EEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCE
Q 042739 244 FMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSR 322 (505)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~ 322 (505)
.+. .....+ ...+++++.... ..-..++.-++|||+++ -+......++..+.....+..
T Consensus 91 EID----AAs~~~-VddIReli~~~~---------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~ 150 (702)
T PRK14960 91 EID----AASRTK-VEDTRELLDNVP---------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVK 150 (702)
T ss_pred Eec----ccccCC-HHHHHHHHHHHh---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcE
Confidence 110 000000 011111111100 00112456689999996 344566677776665566777
Q ss_pred EEEEeCcchhh--cccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHH
Q 042739 323 IIITTRDKRVL--DKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALE 389 (505)
Q Consensus 323 iliTsR~~~~~--~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 389 (505)
+|++|.+..-. ........+++.+++.++..+.+...+...+ .....+.+..|++.++|.+..+.
T Consensus 151 FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg--I~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 151 FLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ--IAADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred EEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 88877654221 1123456799999999999999987773322 22345667889999999886554
No 43
>PTZ00202 tuzin; Provisional
Probab=98.84 E-value=6.9e-07 Score=87.03 Aligned_cols=164 Identities=13% Similarity=0.148 Sum_probs=100.0
Q ss_pred CCCCCceechhhHHHHHHhhhccC-CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLES-HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDE 263 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 263 (505)
+++..|+||+.|+.+|...|...+ +..+++.|+|++|+|||||++.+..... ...++.+.. +..+++..
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr------g~eElLr~ 328 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR------GTEDTLRS 328 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC------CHHHHHHH
Confidence 778899999999999999997433 3367999999999999999999997654 224444222 55788888
Q ss_pred HHHHHhCCCCccCCCCch----HHHHh-ccC-CCeEEEEEeCCC-CCHH-HHHHHhcCcCCCCCCCEEEEEeCcchhh--
Q 042739 264 VISQVLGENLKVGTLTIP----QNIKK-GLQ-RMKVLIVLDDVH-DEFT-QLESLAGVIDRFSPGSRIIITTRDKRVL-- 333 (505)
Q Consensus 264 ll~~~~~~~~~~~~~~~~----~~l~~-~l~-~~~~LlVlDdv~-~~~~-~~~~l~~~l~~~~~~~~iliTsR~~~~~-- 333 (505)
++..++-..... ..+.. +.+.+ ... +++.+||+-==+ ++.. ...... .+.....-|+|++----+.+.
T Consensus 329 LL~ALGV~p~~~-k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 329 VVKALGVPNVEA-CGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHHHcCCCCccc-HHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchh
Confidence 888887532211 11122 22222 223 667777776442 2211 111111 111123457777644332211
Q ss_pred -cccCCCcEEEcCCCCHhHHHHHHHHhh
Q 042739 334 -DKCEVSNIFEVKGLEHNKAFELFCRKA 360 (505)
Q Consensus 334 -~~~~~~~~~~l~~L~~~ea~~L~~~~~ 360 (505)
..++.-..|-+++++.++|.++.....
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhcc
Confidence 111233468899999999998886655
No 44
>PRK05642 DNA replication initiation factor; Validated
Probab=98.84 E-value=9.8e-08 Score=88.46 Aligned_cols=155 Identities=15% Similarity=0.313 Sum_probs=92.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCC
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQR 290 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~ 290 (505)
...+.|+|++|+|||+|+..+++.+......++|+. .. ++... ...+.+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~---------~~~~~-----------------~~~~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LA---------ELLDR-----------------GPELLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HH---------HHHhh-----------------hHHHHHhhhh
Confidence 367899999999999999999987654433445554 11 11100 0112222222
Q ss_pred CeEEEEEeCCC---CCHHHHHHHhcCcCCC-CCCCEEEEEeCcchh---------hcccCCCcEEEcCCCCHhHHHHHHH
Q 042739 291 MKVLIVLDDVH---DEFTQLESLAGVIDRF-SPGSRIIITTRDKRV---------LDKCEVSNIFEVKGLEHNKAFELFC 357 (505)
Q Consensus 291 ~~~LlVlDdv~---~~~~~~~~l~~~l~~~-~~~~~iliTsR~~~~---------~~~~~~~~~~~l~~L~~~ea~~L~~ 357 (505)
-. +||+||++ .....-+.+...++.. ..|..+|+|++.... .+.+.....+++++++.++-.+++.
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 22 68899995 1112223333333222 346778888875421 1222334678999999999999998
Q ss_pred HhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 042739 358 RKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSL 395 (505)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 395 (505)
.++.... -...++....|++.+.|..-.+..+...|
T Consensus 177 ~ka~~~~--~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 177 LRASRRG--LHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHcC--CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6553221 22335778888888888877776665544
No 45
>PRK04195 replication factor C large subunit; Provisional
Probab=98.81 E-value=2.3e-07 Score=95.62 Aligned_cols=185 Identities=15% Similarity=0.144 Sum_probs=111.1
Q ss_pred CCCCCceechhhHHHHHHhhhccC--CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLES--HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRD 262 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 262 (505)
.....++|.+..++.|.+|+..-. ...+.+.|+|++|+|||++|..+++.+.- + .+.+. . +.. .....+.
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~--~-~ieln-a---sd~-r~~~~i~ 82 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGW--E-VIELN-A---SDQ-RTADVIE 82 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCC--C-EEEEc-c---ccc-ccHHHHH
Confidence 344569999999999999986421 22678999999999999999999998732 1 11121 1 111 1112222
Q ss_pred HHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCCH------HHHHHHhcCcCCCCCCCEEEEEeCcchhh-c-
Q 042739 263 EVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDEF------TQLESLAGVIDRFSPGSRIIITTRDKRVL-D- 334 (505)
Q Consensus 263 ~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~~~~~l~~~l~~~~~~~~iliTsR~~~~~-~- 334 (505)
.++....... .....++-+||||+++ .. .....+...+. ..+..+|+|+.+..-. .
T Consensus 83 ~~i~~~~~~~-------------sl~~~~~kvIiIDEaD-~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 83 RVAGEAATSG-------------SLFGARRKLILLDEVD-GIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLR 146 (482)
T ss_pred HHHHHhhccC-------------cccCCCCeEEEEecCc-ccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchh
Confidence 2222211110 0011356799999994 22 23455544443 2344566666443111 1
Q ss_pred -ccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 042739 335 -KCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSL 395 (505)
Q Consensus 335 -~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 395 (505)
.......+.+.+++.++....+...+...+. ....+....|++.++|....+......+
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi--~i~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGI--ECDDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1123467999999999999998877633222 2235678899999999877665444333
No 46
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=5.5e-07 Score=87.61 Aligned_cols=178 Identities=16% Similarity=0.191 Sum_probs=112.4
Q ss_pred CCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcc-----cccceEEEeecccccccccHHHHHH
Q 042739 188 DGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISR-----YFQGNCFMANVREESNKLGVIRVRD 262 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-----~f~~~~~~~~~~~~~~~~~~~~~~~ 262 (505)
..++|-+...+.|.+.+..+ .-.+...++|+.|+|||++|..++..+-. .++....+.... ..... .+.++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~--~~~i~-v~~ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN--KKSIG-VDDIR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc--CCCCC-HHHHH
Confidence 35788888899999998643 23568889999999999999999987522 122222222100 01111 11122
Q ss_pred HHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcchhh-cc-cCCC
Q 042739 263 EVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDKRVL-DK-CEVS 339 (505)
Q Consensus 263 ~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~-~~-~~~~ 339 (505)
++...+... -..+++-++|+|+++ .+......++..+...+.++.+|++|.+...+ +. ....
T Consensus 80 ~~~~~~~~~---------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 80 NIIEEVNKK---------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHHHHHhcC---------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 222222110 112345578888885 46667888888888777788888888655322 21 2235
Q ss_pred cEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHH
Q 042739 340 NIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEV 390 (505)
Q Consensus 340 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 390 (505)
..+++.+++.++..+++.+... ....+.+..++..++|.|.-+..
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYN------DIKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhc------CCCHHHHHHHHHHcCCCHHHHHH
Confidence 6899999999999988876541 11234467889999999875543
No 47
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=3.4e-07 Score=89.55 Aligned_cols=196 Identities=10% Similarity=0.054 Sum_probs=115.4
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc----ccceEEEeecccccccccHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY----FQGNCFMANVREESNKLGVIRV 260 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~~~ 260 (505)
.....++|-+...+.|...+..+. .+..+.|+|+.|+||||||..+++.+-.. +...... .+.+-...
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-------~~~~~c~~ 91 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-------DPDPASPV 91 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-------CCCCCCHH
Confidence 566779999999999999997432 35678999999999999999999886432 1100000 00000111
Q ss_pred HHHHHHHHh-------CC-CCcc--CCC----CchHHHHhcc-----CCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCC
Q 042739 261 RDEVISQVL-------GE-NLKV--GTL----TIPQNIKKGL-----QRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPG 320 (505)
Q Consensus 261 ~~~ll~~~~-------~~-~~~~--~~~----~~~~~l~~~l-----~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~ 320 (505)
.+.+..... .. .... ... +.+..+.+.+ .++.-++|||+++ .+......++..+.....+
T Consensus 92 c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 92 WRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred HHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 111111100 00 0000 001 1122233332 2456799999996 3555666676666654455
Q ss_pred CEEEEEeCcc-hhhccc-CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHH
Q 042739 321 SRIIITTRDK-RVLDKC-EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLG 392 (505)
Q Consensus 321 ~~iliTsR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 392 (505)
..+|++|... .+.... .....+.+.+++.++..+++...... .. ...+.+..+++.++|.|.....+.
T Consensus 172 ~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~--~~--~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 172 ALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS--QG--SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc--cC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5555544433 332222 23468999999999999999874311 11 224557789999999998665443
No 48
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=2.4e-07 Score=91.82 Aligned_cols=176 Identities=11% Similarity=0.109 Sum_probs=106.0
Q ss_pred CCceechhhHHHHHHhhhccCC--------CceEEEEeccCcchHHHHHHHHHhhhcccc--------------------
Q 042739 188 DGFIGINSRIEEIKSLLCLESH--------DARIVGIWGMGGIGKTTIASVVFHQISRYF-------------------- 239 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-------------------- 239 (505)
..++|-+..++.|.+.+..+.+ -.+.+.++|++|+|||++|..++..+-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4588999999999999975431 256788999999999999999998643221
Q ss_pred cceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCC
Q 042739 240 QGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFS 318 (505)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~ 318 (505)
+...++.. . ..... ..-++++...... .-..+++-++|||+++ .+......|+..+...+
T Consensus 85 pD~~~i~~-~--~~~i~-i~~iR~l~~~~~~---------------~p~~~~~kViiIDead~m~~~aanaLLk~LEep~ 145 (394)
T PRK07940 85 PDVRVVAP-E--GLSIG-VDEVRELVTIAAR---------------RPSTGRWRIVVIEDADRLTERAANALLKAVEEPP 145 (394)
T ss_pred CCEEEecc-c--cccCC-HHHHHHHHHHHHh---------------CcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC
Confidence 11111110 0 00000 0011111111110 0012345588899996 34445566666666555
Q ss_pred CCCEEEEEeCcc-hhhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHH
Q 042739 319 PGSRIIITTRDK-RVLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALE 389 (505)
Q Consensus 319 ~~~~iliTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 389 (505)
.+..+|++|.+. .+.+. ......+.+.+++.++..+.+.+.. . . ..+.+..++..++|.|....
T Consensus 146 ~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---~-~---~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 146 PRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---G-V---DPETARRAARASQGHIGRAR 211 (394)
T ss_pred CCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc---C-C---CHHHHHHHHHHcCCCHHHHH
Confidence 667666666654 33322 2345689999999999999887543 1 1 13457788999999997443
No 49
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.78 E-value=2e-07 Score=96.83 Aligned_cols=196 Identities=12% Similarity=0.067 Sum_probs=111.7
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEV 264 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 264 (505)
.....+||.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+-...... . ..+. .......+
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-~-~pCg-------~C~sCr~i 82 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-G-EPCG-------VCQSCTQI 82 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-C-CCCc-------ccHHHHHH
Confidence 445679999999999999997432 256789999999999999999998753211000 0 0000 00000000
Q ss_pred HHHHhCCC-----CccCCCCchHHHHhc-----cCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcch-h
Q 042739 265 ISQVLGEN-----LKVGTLTIPQNIKKG-----LQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDKR-V 332 (505)
Q Consensus 265 l~~~~~~~-----~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~~-~ 332 (505)
...-.... ......+.+..+.+. ..++.-++|||+++ -+......|+..+......+++|++|.+.. +
T Consensus 83 ~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred hccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 00000000 000000001111111 12455689999995 233445566666655456677777775442 2
Q ss_pred hcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHH
Q 042739 333 LDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLG 392 (505)
Q Consensus 333 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 392 (505)
... .+....+.+.+++.++..+.+.+.+...+ .....+.+..|++.++|.+.-+..+.
T Consensus 163 ~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg--i~id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 163 PVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK--IAYEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred chHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHhCCCHHHHHHHH
Confidence 111 12335688899999999999988773322 22345678899999999996655444
No 50
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.77 E-value=1.1e-06 Score=89.20 Aligned_cols=168 Identities=13% Similarity=0.193 Sum_probs=101.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhccccc--ceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhcc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQ--GNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGL 288 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l 288 (505)
...+.|+|+.|+|||+|+..+++.+....+ ..+++. ...+...+...+.... .....+++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~~------~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKTH------KEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHhh------hHHHHHHHHh
Confidence 456889999999999999999987654322 223332 1233333333332100 1133344444
Q ss_pred CCCeEEEEEeCCCC---CHHHHHHHhcCcCCC-CCCCEEEEEeCcch---------hhcccCCCcEEEcCCCCHhHHHHH
Q 042739 289 QRMKVLIVLDDVHD---EFTQLESLAGVIDRF-SPGSRIIITTRDKR---------VLDKCEVSNIFEVKGLEHNKAFEL 355 (505)
Q Consensus 289 ~~~~~LlVlDdv~~---~~~~~~~l~~~l~~~-~~~~~iliTsR~~~---------~~~~~~~~~~~~l~~L~~~ea~~L 355 (505)
.. .-+|||||++. .....+.+...+... ..+..||+|+.... +.+.+...-.+.+++++.++-.++
T Consensus 205 ~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 CQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred cc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 43 34888999951 122333343333221 34557888876431 222333455788999999999999
Q ss_pred HHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 042739 356 FCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSL 395 (505)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 395 (505)
+.+.+-..+......++.+..|++.++|.|..+.-+...+
T Consensus 284 L~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 284 IKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 9988733221113456788999999999999987766443
No 51
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=7.5e-07 Score=89.22 Aligned_cols=192 Identities=13% Similarity=0.100 Sum_probs=112.4
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEV 264 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 264 (505)
.....++|-+..+..|..++..+. -.+.+.++|+.|+||||+|+.+++.+-....... ..+..... ...+
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~--~pCg~C~s-------C~~i 84 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN--EPCNECTS-------CLEI 84 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc--cccCCCcH-------HHHH
Confidence 445678999999999999987432 2456889999999999999999987643211000 00000000 0000
Q ss_pred HHHHhCCCCcc-----CCCCchHHHHhc-----cCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-hh
Q 042739 265 ISQVLGENLKV-----GTLTIPQNIKKG-----LQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK-RV 332 (505)
Q Consensus 265 l~~~~~~~~~~-----~~~~~~~~l~~~-----l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~ 332 (505)
.......-..+ ...+....+.+. ..++.-++|||+++ -+.+....|+..+........+|++|.+. .+
T Consensus 85 ~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI 164 (484)
T PRK14956 85 TKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKI 164 (484)
T ss_pred HccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhc
Confidence 00000000000 001111112111 23456799999996 45566777777776545566666555543 32
Q ss_pred hcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHH
Q 042739 333 LDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLAL 388 (505)
Q Consensus 333 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (505)
... ......+.+.+++.++..+.+...+...+ .....+.+..|++.++|.+.-.
T Consensus 165 ~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg--i~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 165 PETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN--VQYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred cHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCChHHHH
Confidence 222 22345799999999999999888763222 2234567889999999998544
No 52
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=9.2e-07 Score=92.10 Aligned_cols=197 Identities=14% Similarity=0.158 Sum_probs=113.2
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccccc---ceEEEeecccccccccHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQ---GNCFMANVREESNKLGVIRVR 261 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~~ 261 (505)
...+.+||-+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+-..-+ .+.- ..+-+.-...
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~-------~~pCg~C~~C 84 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT-------ATPCGVCQAC 84 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC-------CCCCCccHHH
Confidence 445679999999999999987432 3567789999999999999999887532100 0000 0000000011
Q ss_pred HHHHHHHhCCCCccC-----CCCchHHHHhc-----cCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc
Q 042739 262 DEVISQVLGENLKVG-----TLTIPQNIKKG-----LQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK 330 (505)
Q Consensus 262 ~~ll~~~~~~~~~~~-----~~~~~~~l~~~-----l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~ 330 (505)
..+-.........+. ..+....+.+. ..++.-++|||+++ -+......|+..+......+.+|++|.+.
T Consensus 85 ~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~ 164 (618)
T PRK14951 85 RDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDP 164 (618)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCc
Confidence 111000000000000 00011111111 12345589999997 45556777777776655666676665442
Q ss_pred -hhh-cccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHH
Q 042739 331 -RVL-DKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVL 391 (505)
Q Consensus 331 -~~~-~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 391 (505)
.+. ........+++.+++.++..+.+.+.+...+. ....+.+..|++.++|.+.-+..+
T Consensus 165 ~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi--~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 165 QKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV--PAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 222 12234567999999999999999877632221 223466788999999988665444
No 53
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=7.4e-07 Score=90.23 Aligned_cols=182 Identities=13% Similarity=0.168 Sum_probs=112.7
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc---------------------ccceE
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY---------------------FQGNC 243 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~ 243 (505)
.....+||-+..++.|.+.+..+. -.+.+.++|+.|+||||+|+.++..+-.. +...+
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 445678999999999998886432 25578899999999999999998754211 11111
Q ss_pred EEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCE
Q 042739 244 FMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSR 322 (505)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~ 322 (505)
.+.. ....++ +..++++...... -..++.-++|+|+++ -+......|+..+...++.+.
T Consensus 89 eida----as~~~v-ddIR~Iie~~~~~---------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~ 148 (491)
T PRK14964 89 EIDA----ASNTSV-DDIKVILENSCYL---------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVK 148 (491)
T ss_pred EEec----ccCCCH-HHHHHHHHHHHhc---------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeE
Confidence 1110 000111 1111222111100 012345689999996 344566777777776667777
Q ss_pred EEEEeCcc-hhhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHH
Q 042739 323 IIITTRDK-RVLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALE 389 (505)
Q Consensus 323 iliTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 389 (505)
+|++|.+. .+... ......+++.+++.++..+.+.+.+...+ ....++.+..|++.++|.+..+.
T Consensus 149 fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Eg--i~i~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 149 FILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKEN--IEHDEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred EEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 77766443 22222 23456799999999999999988773322 22345667889999999987443
No 54
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.72 E-value=6.3e-07 Score=80.37 Aligned_cols=160 Identities=13% Similarity=0.162 Sum_probs=94.8
Q ss_pred HHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc---------------------ccceEEEeecccccccccH
Q 042739 199 EIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY---------------------FQGNCFMANVREESNKLGV 257 (505)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~~~~ 257 (505)
.|.+.+..+ .-.+.+.++|+.|+|||++|..++..+-.. ++...++... .....
T Consensus 3 ~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~~~- 77 (188)
T TIGR00678 3 QLKRALEKG-RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQSIK- 77 (188)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCcCC-
Confidence 345555422 224678999999999999999999886432 1111111100 00000
Q ss_pred HHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-hhhcc
Q 042739 258 IRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK-RVLDK 335 (505)
Q Consensus 258 ~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~ 335 (505)
.+.+++++..+... -..+.+-++|+||++ .+.+..+.++..+...+..+.+|++|++. .+...
T Consensus 78 ~~~i~~i~~~~~~~---------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~ 142 (188)
T TIGR00678 78 VDQVRELVEFLSRT---------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPT 142 (188)
T ss_pred HHHHHHHHHHHccC---------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHH
Confidence 11111111111100 012456689999995 24445666777776656677777777654 22111
Q ss_pred c-CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChH
Q 042739 336 C-EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPL 386 (505)
Q Consensus 336 ~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 386 (505)
+ .....+++.+++.++..+.+.+.. ..++.+..+++.++|.|.
T Consensus 143 i~sr~~~~~~~~~~~~~~~~~l~~~g--------i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 143 IRSRCQVLPFPPLSEEALLQWLIRQG--------ISEEAAELLLALAGGSPG 186 (188)
T ss_pred HHhhcEEeeCCCCCHHHHHHHHHHcC--------CCHHHHHHHHHHcCCCcc
Confidence 1 234689999999999999997761 124668899999999985
No 55
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.72 E-value=2.5e-07 Score=96.41 Aligned_cols=196 Identities=14% Similarity=0.119 Sum_probs=115.1
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEV 264 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 264 (505)
.....+||-+..++.|.+.+..+. -.+.+.++|+.|+||||+|+.+++.+-.... .. ..+.+.......+
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~----~~-----~~pCg~C~~C~~i 82 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETG----IT-----ATPCGECDNCREI 82 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccC----CC-----CCCCCCCHHHHHH
Confidence 445679999999999999997432 2456789999999999999999987532110 00 0000000111111
Q ss_pred HHHHhCCCCcc-----CCCCchHHHHhc-----cCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-hh
Q 042739 265 ISQVLGENLKV-----GTLTIPQNIKKG-----LQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK-RV 332 (505)
Q Consensus 265 l~~~~~~~~~~-----~~~~~~~~l~~~-----l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~ 332 (505)
...-......+ ...+....+.+. ..++.-++|||+++ .+......|+..+......+++|++|.+. .+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 10000000000 000011111111 23456799999997 45567777877777656677666666554 33
Q ss_pred hcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHH
Q 042739 333 LDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLG 392 (505)
Q Consensus 333 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 392 (505)
... ......+.+.+|+.++..+.+...+...+ .....+....|++.++|.+.-...+.
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~--i~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ--IPFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 222 23356899999999999999987662221 12234567789999999887554443
No 56
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.70 E-value=1.4e-06 Score=86.60 Aligned_cols=186 Identities=15% Similarity=0.110 Sum_probs=112.0
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc----c-c----------------ceE
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY----F-Q----------------GNC 243 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~----f-~----------------~~~ 243 (505)
.....++|.+..++.|.+++..+. -.+.+.++|++|+|||++|..++..+... + + ...
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence 344568999999999999886432 25678899999999999999999875321 1 0 011
Q ss_pred EEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCE
Q 042739 244 FMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSR 322 (505)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~ 322 (505)
++.. ..... ....++++..+.. .-..+++-++|+|+++ -+......+...+...+..+.
T Consensus 90 ~~~~----~~~~~-~~~~~~l~~~~~~---------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 90 EIDA----ASNNG-VDDIREILDNVKY---------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred Eeec----cccCC-HHHHHHHHHHHhc---------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 1110 00000 0111122211110 0012345589999994 233445666666655456667
Q ss_pred EEEEeCcch-hhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHH
Q 042739 323 IIITTRDKR-VLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGS 393 (505)
Q Consensus 323 iliTsR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 393 (505)
+|++|.+.. +... ......+++.+++.++..+++...+...+. ...++.+..+++.++|.|..+.....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~--~i~~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI--KIEDEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCChHHHHHHHH
Confidence 777765443 2221 123457899999999999999887632221 22346788899999999987655543
No 57
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=7.2e-07 Score=91.68 Aligned_cols=184 Identities=14% Similarity=0.092 Sum_probs=112.0
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc---------------------ccceE
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY---------------------FQGNC 243 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~ 243 (505)
.....+||-+..++.|.+++..+. -.+.+.++|++|+||||+|+.+++.+-.. ++...
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 445678999999999999997432 25567899999999999999999875221 01111
Q ss_pred EEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCE
Q 042739 244 FMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSR 322 (505)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~ 322 (505)
.+. .....++ +..++++..... .-..++.-++|||+++ -+......++..+...+..++
T Consensus 92 eid----aas~~~v-~~iR~l~~~~~~---------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~ 151 (509)
T PRK14958 92 EVD----AASRTKV-EDTRELLDNIPY---------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVK 151 (509)
T ss_pred EEc----ccccCCH-HHHHHHHHHHhh---------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeE
Confidence 111 0000111 111222221110 0112445689999996 345566777777766566777
Q ss_pred EEEEeCcc-hhhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHH
Q 042739 323 IIITTRDK-RVLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVL 391 (505)
Q Consensus 323 iliTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 391 (505)
+|++|.+. .+... ......+++.+++.++..+.+...+...+. ....+.+..|++.++|.+.-+..+
T Consensus 152 fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi--~~~~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 152 FILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV--EFENAALDLLARAANGSVRDALSL 220 (509)
T ss_pred EEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 77766543 22211 123456889999999988887776632221 223456778999999988655443
No 58
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.70 E-value=3.8e-08 Score=82.69 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=69.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc-----ccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCc-hHH
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY-----FQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTI-PQN 283 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~~ 283 (505)
+.+.+.|+|++|+|||+++.+++..+... ....+|+. .........+...++..+............ .+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 78 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKSRQTSDELRSL 78 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccccCCHHHHHHH
Confidence 35689999999999999999999986543 23344554 333336777788888887765544122222 556
Q ss_pred HHhccCCC-eEEEEEeCCC-C-CHHHHHHHhcCcCCCCCCCEEEEEeCc
Q 042739 284 IKKGLQRM-KVLIVLDDVH-D-EFTQLESLAGVIDRFSPGSRIIITTRD 329 (505)
Q Consensus 284 l~~~l~~~-~~LlVlDdv~-~-~~~~~~~l~~~l~~~~~~~~iliTsR~ 329 (505)
+.+.+... ..+||||+++ - ....++.+..... ..+.++|+..+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 66666644 4599999994 2 2344444444333 567788887775
No 59
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=1.1e-06 Score=89.60 Aligned_cols=190 Identities=13% Similarity=0.164 Sum_probs=110.9
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccccc--c-----eEEEeecccccccccH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQ--G-----NCFMANVREESNKLGV 257 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~-----~~~~~~~~~~~~~~~~ 257 (505)
.....++|-+..++.|...+..+. -.+.+.++|++|+||||+|+.+++.+-.... . .|..+
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----------- 85 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----------- 85 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC-----------
Confidence 445668999999999998876432 2567889999999999999999987532110 0 00000
Q ss_pred HHHHHHHHHHHhCCCCcc-----CCCCchHHHHhc-----cCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEE
Q 042739 258 IRVRDEVISQVLGENLKV-----GTLTIPQNIKKG-----LQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIIT 326 (505)
Q Consensus 258 ~~~~~~ll~~~~~~~~~~-----~~~~~~~~l~~~-----l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliT 326 (505)
.....+.......-..+ ...+....+.+. ..+++-++|||+++ -+...+..|+..+...+..+.+|++
T Consensus 86 -~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~a 164 (507)
T PRK06645 86 -TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFA 164 (507)
T ss_pred -hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEE
Confidence 00000000000000000 000001111111 22456689999996 2445567777666655556666554
Q ss_pred e-Ccchhhccc-CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHH
Q 042739 327 T-RDKRVLDKC-EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALE 389 (505)
Q Consensus 327 s-R~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 389 (505)
| +...+...+ .....+++.+++.++..+.+...+...+ .....+.+..|++.++|.+.-+.
T Consensus 165 Tte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg--i~ie~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 165 TTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN--LKTDIEALRIIAYKSEGSARDAV 227 (507)
T ss_pred eCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 4 433333222 2345799999999999999988874322 22235667889999999886553
No 60
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=1.7e-06 Score=88.07 Aligned_cols=186 Identities=14% Similarity=0.121 Sum_probs=107.5
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccc-----c----------------ceE
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYF-----Q----------------GNC 243 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~----------------~~~ 243 (505)
...+.++|.+...+.|...+..+. -.+.+.++|++|+||||+|+.+++.+...- + ...
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 445679999999888888886432 245688999999999999999998753210 0 000
Q ss_pred EEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCE
Q 042739 244 FMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSR 322 (505)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~ 322 (505)
.+. .....+. ..++++...... .-..+++-++|+|+++ -+......++..+...+....
T Consensus 90 el~----aa~~~gi-d~iR~i~~~~~~---------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv 149 (472)
T PRK14962 90 ELD----AASNRGI-DEIRKIRDAVGY---------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV 149 (472)
T ss_pred EEe----CcccCCH-HHHHHHHHHHhh---------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence 110 0000011 011111111000 0122456799999995 233445666666654444555
Q ss_pred EEEEeCcc-hhhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCC-hHHHHHHHH
Q 042739 323 IIITTRDK-RVLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGN-PLALEVLGS 393 (505)
Q Consensus 323 iliTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~~ 393 (505)
+|++|.+. .+... ......+++.+++.++....+.+.+...+ ....++.+..|++.++|. ..++..+-.
T Consensus 150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg--i~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 150 FVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG--IEIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred EEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55555432 22221 22346899999999999999888763222 123356678888888766 555555544
No 61
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=5.6e-07 Score=92.45 Aligned_cols=179 Identities=13% Similarity=0.114 Sum_probs=109.9
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccc---------------------cceE
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYF---------------------QGNC 243 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~ 243 (505)
.....++|-+..++.|...+..+ ...+.+.++|+.|+||||+|+.+++.+.... ...+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 34567899999999999998643 2356688999999999999999998653210 1111
Q ss_pred EEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCE
Q 042739 244 FMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSR 322 (505)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~ 322 (505)
.+. .....++ +..++++..+.. .-..+++-++|+|+++ .+......|+..+...+..+.
T Consensus 92 eid----aas~~gv-d~ir~ii~~~~~---------------~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 92 EID----AASRTGV-EETKEILDNIQY---------------MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred Eee----cccccCH-HHHHHHHHHHHh---------------hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 110 0000011 111111111100 0122456699999996 355567777777776556666
Q ss_pred EEEEeCcc-hhhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChH
Q 042739 323 IIITTRDK-RVLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPL 386 (505)
Q Consensus 323 iliTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 386 (505)
+|++|.+. .+... ......+++.+++.++..+.+...+...+ .....+.+..|++.++|.+.
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLR 215 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 66555433 23322 23456899999999999988887653221 22345667789999999875
No 62
>PRK09087 hypothetical protein; Validated
Probab=98.68 E-value=7.5e-07 Score=81.87 Aligned_cols=144 Identities=13% Similarity=0.166 Sum_probs=89.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCC
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQR 290 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~ 290 (505)
.+.+.|+|++|+|||+|++.++.... ..++.. ..+..+.+..+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~----------~~~~~~~~~~~--------------------~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP----------NEIGSDAANAA--------------------AE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH----------HHcchHHHHhh--------------------hc
Confidence 46789999999999999998887642 223331 01111111111 01
Q ss_pred CeEEEEEeCCCC---CHHHHHHHhcCcCCCCCCCEEEEEeCcc---------hhhcccCCCcEEEcCCCCHhHHHHHHHH
Q 042739 291 MKVLIVLDDVHD---EFTQLESLAGVIDRFSPGSRIIITTRDK---------RVLDKCEVSNIFEVKGLEHNKAFELFCR 358 (505)
Q Consensus 291 ~~~LlVlDdv~~---~~~~~~~l~~~l~~~~~~~~iliTsR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L~~~ 358 (505)
-+|+|||++. +...+-.+...+. ..|..+|+|++.. ...+.+.....+++++++.++-.+++.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 2788899951 2222222222222 3467899988743 2333445567899999999999999998
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 042739 359 KAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSL 395 (505)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 395 (505)
.+... .-.-.++....|++.+.|..-.+..+...|
T Consensus 165 ~~~~~--~~~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 165 LFADR--QLYVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHHc--CCCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 87332 123346778889999998888877655444
No 63
>PF13173 AAA_14: AAA domain
Probab=98.67 E-value=1.1e-07 Score=79.38 Aligned_cols=119 Identities=16% Similarity=0.212 Sum_probs=70.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCC
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQR 290 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~ 290 (505)
.+++.|.|+.|+|||||+.+++.+.. .-...+++. +..... ......+ ..+.+.+....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~~---~~~~~~~----------------~~~~~~~~~~~ 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPRD---RRLADPD----------------LLEYFLELIKP 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHHH---HHHhhhh----------------hHHHHHHhhcc
Confidence 36899999999999999999998866 112333443 211111 0000000 11223333334
Q ss_pred CeEEEEEeCCCCCHHHHHHHhcCcCCCCCCCEEEEEeCcchhhcc------cCCCcEEEcCCCCHhH
Q 042739 291 MKVLIVLDDVHDEFTQLESLAGVIDRFSPGSRIIITTRDKRVLDK------CEVSNIFEVKGLEHNK 351 (505)
Q Consensus 291 ~~~LlVlDdv~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~------~~~~~~~~l~~L~~~e 351 (505)
++.+|+||+++ ....|......+....+..+|++|+........ .+....+++.||+..|
T Consensus 61 ~~~~i~iDEiq-~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 61 GKKYIFIDEIQ-YLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred CCcEEEEehhh-hhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 67899999995 333444444444333457899999987754422 1223468999999876
No 64
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.67 E-value=2.4e-06 Score=91.02 Aligned_cols=178 Identities=19% Similarity=0.283 Sum_probs=103.4
Q ss_pred CCCCCceechhhHH---HHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHH
Q 042739 185 TDLDGFIGINSRIE---EIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVR 261 (505)
Q Consensus 185 ~~~~~fvGR~~el~---~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 261 (505)
...+.|+|.+..+. .|.+.+.. +....+.|+|++|+||||||+.+++.....|. .+. ... .++ ...
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln---a~~--~~i-~di 93 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN---AVL--AGV-KDL 93 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh---hhh--hhh-HHH
Confidence 34466899998884 56666653 34557789999999999999999987654431 111 000 011 011
Q ss_pred HHHHHHHhCCCCccCCCCchHHHHhcc--CCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEE--eCcch--hhc
Q 042739 262 DEVISQVLGENLKVGTLTIPQNIKKGL--QRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIIT--TRDKR--VLD 334 (505)
Q Consensus 262 ~~ll~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliT--sR~~~--~~~ 334 (505)
++.+.. ....+ .+++.+||||+++ .+....+.+...+. .+..++|+ |.+.. +..
T Consensus 94 r~~i~~----------------a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 94 RAEVDR----------------AKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred HHHHHH----------------HHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 111111 11111 2356799999996 34445555655443 34444443 33321 111
Q ss_pred c-cCCCcEEEcCCCCHhHHHHHHHHhhcC-----CCCCChhHHHHHHHHHHHhcCChHHHHHHH
Q 042739 335 K-CEVSNIFEVKGLEHNKAFELFCRKAFG-----QNNRSHDLYQLSQRVVCYADGNPLALEVLG 392 (505)
Q Consensus 335 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~-----~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 392 (505)
. ......+.+++|+.++...++.+.+.. +.......++....|++.+.|+...+.-+.
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~L 218 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNAL 218 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 1 122457999999999999999876631 011223345677889999999866554443
No 65
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.66 E-value=2.5e-06 Score=87.33 Aligned_cols=227 Identities=14% Similarity=0.163 Sum_probs=127.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccc--eEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhcc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQG--NCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGL 288 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l 288 (505)
...+.|+|++|+|||+|+..+++.+...++. ..++. . ..+...+...+... ....+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~---------~~~~~~~~~~~~~~--------~~~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-S---------EKFTNDFVNALRNN--------TMEEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHHHHHHcC--------cHHHHHHHH
Confidence 4678999999999999999999998766532 22332 1 12222222222110 122333333
Q ss_pred CCCeEEEEEeCCCC---CHHHHHHHhcCcCCC-CCCCEEEEEeCcch---------hhcccCCCcEEEcCCCCHhHHHHH
Q 042739 289 QRMKVLIVLDDVHD---EFTQLESLAGVIDRF-SPGSRIIITTRDKR---------VLDKCEVSNIFEVKGLEHNKAFEL 355 (505)
Q Consensus 289 ~~~~~LlVlDdv~~---~~~~~~~l~~~l~~~-~~~~~iliTsR~~~---------~~~~~~~~~~~~l~~L~~~ea~~L 355 (505)
. +.-+|+|||++. .....+.+...+... ..+..+|+||.... +.+.+.....+++++++.++-.++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 244899999951 111222333222111 23456888776541 122334446799999999999999
Q ss_pred HHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhc------C--CCHHHHHHHHHhhccC-----CCccHHHHH
Q 042739 356 FCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSLY------Q--NSIQQWEDKLHNLNLI-----SEPNIYKVL 422 (505)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~------~--~~~~~~~~~l~~l~~~-----~~~~l~~~l 422 (505)
+.+.+... ...-.++.+..|++.+.|....|.-+...+. + -+.......+..+... ..+.+...+
T Consensus 289 l~~~~~~~--~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~~~~~~~~~~~~~i~~~v 366 (450)
T PRK00149 289 LKKKAEEE--GIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENIQKVV 366 (450)
T ss_pred HHHHHHHc--CCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCCCCCHHHHHHHH
Confidence 99887332 2223457788999999999886655443331 1 2445555555554211 112233333
Q ss_pred HHhHh----cCC------h--hHHHHHhhhhccCCCCCHHHHHHHHhC
Q 042739 423 KISYD----ELN------S--EEKGIFLDIACFFKGEDVDLLTRIQDN 458 (505)
Q Consensus 423 ~~s~~----~L~------~--~~~~~l~~la~f~~~~~~~~l~~l~~~ 458 (505)
...|. .|- + ..|++..|++---.+.+...+...++.
T Consensus 367 ~~~~~i~~~~l~~~~R~~~~~~aR~iamyl~~~~~~~s~~~Ig~~fg~ 414 (450)
T PRK00149 367 AEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFGG 414 (450)
T ss_pred HHHcCCCHHHHhCCCCCcccChHHHHHHHHHHHhcCCCHHHHHHHcCC
Confidence 33332 221 0 356666677665566677777777653
No 66
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=1.9e-06 Score=93.02 Aligned_cols=187 Identities=11% Similarity=0.077 Sum_probs=111.4
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccc-----cceEEEeecccccccccHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYF-----QGNCFMANVREESNKLGVIR 259 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~ 259 (505)
.....+||.+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-... .++. + .
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~--C------------~ 76 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE--C------------D 76 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc--c------------H
Confidence 344568999999999999997432 245688999999999999999998763210 1100 0 0
Q ss_pred HHHHHHHHHhCCC-----C--ccCCCCchHHHHhc-----cCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEE
Q 042739 260 VRDEVISQVLGEN-----L--KVGTLTIPQNIKKG-----LQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIIT 326 (505)
Q Consensus 260 ~~~~ll~~~~~~~-----~--~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliT 326 (505)
....+........ + .....+.+..+++. ..++.-++|||+++ .+......|+..+......+.+|++
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~ 156 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFA 156 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 0000000000000 0 00001111112111 23455688999996 4556677777777766677777766
Q ss_pred eCcc-hhhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHH
Q 042739 327 TRDK-RVLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLAL 388 (505)
Q Consensus 327 sR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (505)
|.+. .+... ......+++.+++.++..+++.+.+...+ .....+.+..|++.++|.+..+
T Consensus 157 tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG--v~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 157 TTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG--VPVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred eCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 6443 33332 23456899999999999999887662222 1223456678899999988544
No 67
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=1.8e-06 Score=88.87 Aligned_cols=192 Identities=14% Similarity=0.100 Sum_probs=108.0
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEV 264 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 264 (505)
.....++|++..++.|.+++..+ .-.+.+.++|+.|+||||+|..+++.+...-+... ..+ +.....+.+
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~--~~C-------g~C~sCr~i 82 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG--DCC-------NSCSVCESI 82 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--CCC-------cccHHHHHH
Confidence 45567899999999999998643 23567889999999999999999987632110000 000 000000000
Q ss_pred HHHHhCCCCccC-----CCCchHHHHhc-----cCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-hh
Q 042739 265 ISQVLGENLKVG-----TLTIPQNIKKG-----LQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK-RV 332 (505)
Q Consensus 265 l~~~~~~~~~~~-----~~~~~~~l~~~-----l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~ 332 (505)
............ ..+....+.+. ..+++-++|+|+++ .+......|+..+...+....+|++|... .+
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 000000000000 00001111111 11234479999995 23455666766665545556666555433 22
Q ss_pred hcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHH
Q 042739 333 LDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLAL 388 (505)
Q Consensus 333 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (505)
... ......+++.+++.++....+...+...+ .....+.+..+++.++|.+.-+
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il~keg--i~Is~eal~~La~lS~GdlR~A 217 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEK--IKIEDNAIDKIADLADGSLRDG 217 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCcHHHH
Confidence 222 23346799999999999999887663222 1123456788999999987644
No 68
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.63 E-value=2.9e-06 Score=77.47 Aligned_cols=261 Identities=15% Similarity=0.181 Sum_probs=147.9
Q ss_pred CCCCCceechhhHHHHHHhhhcc---CCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLE---SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVR 261 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 261 (505)
.....|||-++..+.|.=.+... ....-.+.++||+|.||||||.-+++.+...+. +........+.++..
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k----~tsGp~leK~gDlaa-- 96 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK----ITSGPALEKPGDLAA-- 96 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE----ecccccccChhhHHH--
Confidence 44567999999888887776532 223567899999999999999999998765432 111100111111111
Q ss_pred HHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCCHHHHHHHh-cCcCC--------CCCCC-----------
Q 042739 262 DEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDEFTQLESLA-GVIDR--------FSPGS----------- 321 (505)
Q Consensus 262 ~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~l~-~~l~~--------~~~~~----------- 321 (505)
++. .|+. .=+|++|.+|.-....+.++ +.+.. .+++.
T Consensus 97 --iLt--------------------~Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 97 --ILT--------------------NLEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred --HHh--------------------cCCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 111 1221 23677888863222222221 11110 11222
Q ss_pred EEEEEeCcchhhccc--CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhcCCC
Q 042739 322 RIIITTRDKRVLDKC--EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSLYQNS 399 (505)
Q Consensus 322 ~iliTsR~~~~~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~ 399 (505)
-|=.|||.-.+...+ ...-+.+++-.+.+|-.+++.+.+.. ......++.+.+|+++..|-|.--.-+.+.++.
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~--l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD-- 229 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI--LGIEIDEEAALEIARRSRGTPRIANRLLRRVRD-- 229 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH--hCCCCChHHHHHHHHhccCCcHHHHHHHHHHHH--
Confidence 223477755333222 13346789999999999999887721 222334567889999999999766555544432
Q ss_pred HHHHHHHHHhhccCCCc----cHHHHHHHhHhcCChhHHHHHhhhhccC--CCCCHHHHHHHHhC-CCchhhHHH-HHhh
Q 042739 400 IQQWEDKLHNLNLISEP----NIYKVLKISYDELNSEEKGIFLDIACFF--KGEDVDLLTRIQDN-PTSMCHRLK-ILVG 471 (505)
Q Consensus 400 ~~~~~~~l~~l~~~~~~----~l~~~l~~s~~~L~~~~~~~l~~la~f~--~~~~~~~l~~l~~~-~~~~~~~l~-~L~~ 471 (505)
+...... ...+. .....|..-=..|+.-.+..|..+.-.. ++...+.+...++. ....++.++ -|++
T Consensus 230 ---fa~V~~~--~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq 304 (332)
T COG2255 230 ---FAQVKGD--GDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQ 304 (332)
T ss_pred ---HHHHhcC--CcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHH
Confidence 1110000 00011 1122222222356666677776655443 55788888888776 444444444 5899
Q ss_pred ccceEEcCCCcE
Q 042739 472 KSLIAISDRKRL 483 (505)
Q Consensus 472 ~sLl~~~~~~~~ 483 (505)
.|+|+....||.
T Consensus 305 ~gfi~RTpRGR~ 316 (332)
T COG2255 305 QGFIQRTPRGRI 316 (332)
T ss_pred hchhhhCCCcce
Confidence 999999888875
No 69
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=1.8e-06 Score=86.61 Aligned_cols=201 Identities=11% Similarity=0.106 Sum_probs=111.9
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc--ccceEEEeecccccccccHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY--FQGNCFMANVREESNKLGVIRVRD 262 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~~ 262 (505)
.....++|-+...+.|.+++..+. -...+.++|++|+||||+|..+++.+... +...-|.... ..+-+.-....
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~---~~~c~~c~~c~ 88 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV---TEPCGECESCR 88 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC---CCCCCCCHHHH
Confidence 445678999999999999887432 24568899999999999999999876321 1000000000 00000000001
Q ss_pred HHHHHHhCCC---C--ccCCCCchHHHHhcc-----CCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCc-c
Q 042739 263 EVISQVLGEN---L--KVGTLTIPQNIKKGL-----QRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRD-K 330 (505)
Q Consensus 263 ~ll~~~~~~~---~--~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~-~ 330 (505)
.+.......- . .....+.+..+.+.+ .+.+-++|+|+++ .+......+...+....+.+.+|+++.+ .
T Consensus 89 ~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 89 DFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 1110000000 0 000011122222222 2445689999995 2444566677666655566666665533 3
Q ss_pred hhhccc-CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHH
Q 042739 331 RVLDKC-EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVL 391 (505)
Q Consensus 331 ~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 391 (505)
.+...+ .....+++.+++.++..+.+...+... ......+.+..|++.++|.+.-+...
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~--g~~i~~~al~~l~~~s~g~lr~a~~~ 228 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAE--GISVDADALQLIGRKAQGSMRDAQSI 228 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 332221 123468999999999999888766221 12234577889999999988755443
No 70
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=6.1e-06 Score=82.33 Aligned_cols=184 Identities=17% Similarity=0.185 Sum_probs=108.6
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc--------ccceEEEeeccccccccc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY--------FQGNCFMANVREESNKLG 256 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~ 256 (505)
...+.++|.+...+.+.+.+..+ .-.+.+.++|++|+|||++|..+++.+... +...++-. ... ...+
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~~~-~~~~ 89 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--DAA-SNNS 89 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--ccc-cCCC
Confidence 44567899999999999999642 235688899999999999999998876431 11111111 000 0000
Q ss_pred HHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-hhhc
Q 042739 257 VIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK-RVLD 334 (505)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~ 334 (505)
.....+++...... -..+++-++++|+++ .....+..+...+......+.+|+++... ....
T Consensus 90 -~~~i~~l~~~~~~~---------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 90 -VDDIRNLIDQVRIP---------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred -HHHHHHHHHHHhhc---------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 11112222211100 012345589999994 23344556655554434455566555332 2222
Q ss_pred c-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHH
Q 042739 335 K-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEV 390 (505)
Q Consensus 335 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 390 (505)
. ......+++.+++.++....+...+...+. ....+.+..+++.++|.+..+..
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~--~i~~~al~~l~~~~~gdlr~~~~ 208 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGI--KFEDDALHIIAQKADGALRDALS 208 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHHHH
Confidence 2 123457899999999999998876633221 22356788899999998775543
No 71
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.60 E-value=4.9e-07 Score=84.90 Aligned_cols=175 Identities=18% Similarity=0.307 Sum_probs=103.0
Q ss_pred CCCceechhhHHH---HHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHH
Q 042739 187 LDGFIGINSRIEE---IKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDE 263 (505)
Q Consensus 187 ~~~fvGR~~el~~---l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 263 (505)
.+.+||-+..+.+ |.+++. .+..+.+.+||++|+||||||+-++..-+.+- ..|+..........++ +.
T Consensus 137 L~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~a~t~dv----R~ 208 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATNAKTNDV----RD 208 (554)
T ss_pred HHHhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEeccccchHHH----HH
Confidence 3456666655433 344443 35577889999999999999999998755532 3344421111222222 33
Q ss_pred HHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEE--EeCcchh---hcccC
Q 042739 264 VISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIII--TTRDKRV---LDKCE 337 (505)
Q Consensus 264 ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~ili--TsR~~~~---~~~~~ 337 (505)
++.+.. -...+.+++.+|++|.+| -+..+.+.+++.. ..|.-++| ||-++.. ...+.
T Consensus 209 ife~aq--------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlS 271 (554)
T KOG2028|consen 209 IFEQAQ--------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLS 271 (554)
T ss_pred HHHHHH--------------HHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHh
Confidence 333211 122345789999999997 3444555555543 35655555 5555422 11223
Q ss_pred CCcEEEcCCCCHhHHHHHHHHhh--c-CCC----CCC----hhHHHHHHHHHHHhcCChH
Q 042739 338 VSNIFEVKGLEHNKAFELFCRKA--F-GQN----NRS----HDLYQLSQRVVCYADGNPL 386 (505)
Q Consensus 338 ~~~~~~l~~L~~~ea~~L~~~~~--~-~~~----~~~----~~~~~~~~~i~~~~~G~PL 386 (505)
...++.|++|+.++...++.+.. . ... ..+ .....+.+-++..|.|-..
T Consensus 272 RC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 272 RCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 45689999999999999987733 1 111 111 1345677778888888754
No 72
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=3.5e-06 Score=87.97 Aligned_cols=198 Identities=15% Similarity=0.160 Sum_probs=115.0
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccc---eEEEeecccccccccHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQG---NCFMANVREESNKLGVIRVR 261 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~~~ 261 (505)
.....++|.+..++.|.+.+..+. -.+.+.++|+.|+||||+|+.+++.+-..... +.-+..+ +.-...
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c-------g~c~~C 92 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC-------GVGEHC 92 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC-------cccHHH
Confidence 445679999999999999997432 25678899999999999999999875322110 0000000 000000
Q ss_pred HHHHHHHhCCCCcc-----CCCCchHHHHhcc-----CCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCc-
Q 042739 262 DEVISQVLGENLKV-----GTLTIPQNIKKGL-----QRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRD- 329 (505)
Q Consensus 262 ~~ll~~~~~~~~~~-----~~~~~~~~l~~~l-----~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~- 329 (505)
..+.......-..+ ...+.+..+.+.+ .+++-++|+|+++ .+......|+..+......+.+|++|.+
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~ 172 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence 11111000000000 0001111222211 2345589999996 3445566777777665667777665533
Q ss_pred chhhccc-CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHH
Q 042739 330 KRVLDKC-EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLG 392 (505)
Q Consensus 330 ~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 392 (505)
..+...+ .....+++.+++.++..+.+.+.+...+ .....+.+..|++.++|.+.-+....
T Consensus 173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg--i~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG--VEVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3332221 2346799999999999999988763222 12334678889999999987665443
No 73
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.58 E-value=7.9e-06 Score=84.33 Aligned_cols=164 Identities=15% Similarity=0.237 Sum_probs=97.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhccccc-c-eEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhcc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQ-G-NCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGL 288 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~-~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l 288 (505)
...+.|+|..|+|||.|+..+++.+...+. . +.|+. ...+..++...+... ....+++.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~~--------~~~~f~~~y 375 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRDG--------KGDSFRRRY 375 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHhc--------cHHHHHHHh
Confidence 346899999999999999999998765332 2 23333 122222333222110 122333333
Q ss_pred CCCeEEEEEeCCC---CCHHHHHHHhcCcCCC-CCCCEEEEEeCcc---------hhhcccCCCcEEEcCCCCHhHHHHH
Q 042739 289 QRMKVLIVLDDVH---DEFTQLESLAGVIDRF-SPGSRIIITTRDK---------RVLDKCEVSNIFEVKGLEHNKAFEL 355 (505)
Q Consensus 289 ~~~~~LlVlDdv~---~~~~~~~~l~~~l~~~-~~~~~iliTsR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L 355 (505)
.+ .-+|||||++ ......+.|...++.. ..+..|||||... .+.+.+...-.++|.+.+.+.-.++
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 33 3478899995 1111122333322211 3356788888753 2233344556899999999999999
Q ss_pred HHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 042739 356 FCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSL 395 (505)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 395 (505)
+.+.+.... ....+++++.|++.+.++.-.|.-+...|
T Consensus 455 L~kka~~r~--l~l~~eVi~yLa~r~~rnvR~LegaL~rL 492 (617)
T PRK14086 455 LRKKAVQEQ--LNAPPEVLEFIASRISRNIRELEGALIRV 492 (617)
T ss_pred HHHHHHhcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 998873322 23346788888888888877766555433
No 74
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.58 E-value=1.7e-06 Score=87.65 Aligned_cols=166 Identities=11% Similarity=0.118 Sum_probs=97.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccc-eEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccC
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQG-NCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQ 289 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~ 289 (505)
...+.|+|++|+|||+|+..+++.+...++. .+.+.. ...+...+...+... ....+++...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~---------~~~f~~~~~~~~~~~--------~~~~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT---------SEKFLNDLVDSMKEG--------KLNEFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE---------HHHHHHHHHHHHhcc--------cHHHHHHHHH
Confidence 4569999999999999999999987665432 233321 122333333333211 1223333333
Q ss_pred CCeEEEEEeCCCC---CHHHHHHHhcCcCC-CCCCCEEEEEeCcc-h--------hhcccCCCcEEEcCCCCHhHHHHHH
Q 042739 290 RMKVLIVLDDVHD---EFTQLESLAGVIDR-FSPGSRIIITTRDK-R--------VLDKCEVSNIFEVKGLEHNKAFELF 356 (505)
Q Consensus 290 ~~~~LlVlDdv~~---~~~~~~~l~~~l~~-~~~~~~iliTsR~~-~--------~~~~~~~~~~~~l~~L~~~ea~~L~ 356 (505)
.+.-+|+|||++. .....+.+...+.. ...+..+|+||... . +.+.+.....+++++.+.+.-.+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 3456899999951 11111222222211 12355788887532 1 1222334457899999999999999
Q ss_pred HHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 042739 357 CRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSL 395 (505)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 395 (505)
.+.+.... ..-.++.+..|++.+.|+-..|.-+...|
T Consensus 273 ~~~~~~~~--~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l 309 (440)
T PRK14088 273 RKMLEIEH--GELPEEVLNFVAENVDDNLRRLRGAIIKL 309 (440)
T ss_pred HHHHHhcC--CCCCHHHHHHHHhccccCHHHHHHHHHHH
Confidence 88873222 22335778889999999877776554433
No 75
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.57 E-value=6.1e-07 Score=76.64 Aligned_cols=45 Identities=29% Similarity=0.482 Sum_probs=37.7
Q ss_pred eechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 191 IGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 191 vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
+|++..+..+...+.. +..+.+.|+|++|+|||+|++.+++.+..
T Consensus 1 ~~~~~~~~~i~~~~~~--~~~~~v~i~G~~G~GKT~l~~~i~~~~~~ 45 (151)
T cd00009 1 VGQEEAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFR 45 (151)
T ss_pred CchHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 4788899999888863 23568899999999999999999998753
No 76
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=4.2e-06 Score=88.09 Aligned_cols=198 Identities=12% Similarity=0.112 Sum_probs=113.2
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEV 264 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 264 (505)
...+.+||-+..++.|..++..+. -.+.+.++|+.|+|||++|+.+++.+.......-+ .+.+.......+
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~--------~~c~~c~~c~~i 83 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG--------RPCGTCEMCRAI 83 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCCccCHHHHHH
Confidence 345679999999999999886432 35667899999999999999999876321100000 000000111111
Q ss_pred HHHHhCCCCcc-----CCCCchHHHHhc-----cCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-hh
Q 042739 265 ISQVLGENLKV-----GTLTIPQNIKKG-----LQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK-RV 332 (505)
Q Consensus 265 l~~~~~~~~~~-----~~~~~~~~l~~~-----l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~ 332 (505)
........... ...+....+.+. ..+++-++|||+++ .+.+..+.|+..+......+.+|+++.+. .+
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 11100000000 000011112211 12346689999995 24455666776666555566666666443 22
Q ss_pred hcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHH
Q 042739 333 LDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGS 393 (505)
Q Consensus 333 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 393 (505)
... ......+++.+++.++....+...+...+. ....+.+..|++.++|.+..+.....
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl--~i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI--NLEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 221 123457889999999999988877633221 22356788999999999976654443
No 77
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=6e-06 Score=85.77 Aligned_cols=190 Identities=15% Similarity=0.126 Sum_probs=110.3
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEV 264 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 264 (505)
.....++|.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.++..+-...... . ..+ +.-.....+
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~-~pC-------g~C~~C~~i 79 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-A-TPC-------GVCESCVAL 79 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-C-Ccc-------cccHHHHHh
Confidence 445678999999999999997432 255678999999999999999998753211000 0 000 000000000
Q ss_pred HHHHhCCCC-------ccCCCCchHHHHhc-----cCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCc-c
Q 042739 265 ISQVLGENL-------KVGTLTIPQNIKKG-----LQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRD-K 330 (505)
Q Consensus 265 l~~~~~~~~-------~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~-~ 330 (505)
........+ .....+....+++. ..++.-++|||+++ -+......|+..+......+.+|++|.+ .
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred hcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 000000000 00001111122211 12345589999996 4556677777777766667766665544 3
Q ss_pred hhhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChH
Q 042739 331 RVLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPL 386 (505)
Q Consensus 331 ~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 386 (505)
.+... ......+++.+++.++..+.+...+...+. ....+.+..|++.++|.+.
T Consensus 160 kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi--~i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV--VVDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 33322 233567999999999999998876633221 2234567788899999886
No 78
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.1e-06 Score=90.85 Aligned_cols=181 Identities=12% Similarity=0.090 Sum_probs=108.8
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccc-----cc----------------eE
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYF-----QG----------------NC 243 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~----------------~~ 243 (505)
.....++|-+..++.|.+++..+. -.+.+.++|++|+||||+|+.+++.+-... ++ .+
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 344668999999999999987422 245678999999999999999998753211 00 00
Q ss_pred EEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCE
Q 042739 244 FMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSR 322 (505)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~ 322 (505)
.+. ..... -.+.+++++..... .-..+++-++|+|+++ -+......++..+...+..+.
T Consensus 92 ei~----~~~~~-~vd~ir~l~~~~~~---------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 92 EVD----AASNT-QVDAMRELLDNAQY---------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred Eee----ccccC-CHHHHHHHHHHHhh---------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 010 00000 01111112111100 0112456699999995 244456667777766556666
Q ss_pred EEEEeCcc-hhhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHH
Q 042739 323 IIITTRDK-RVLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLAL 388 (505)
Q Consensus 323 iliTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (505)
+|++|.+. .+... ......+++.+++.++..+.+.+.+...+ .....+.+..|++.++|.+.-+
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg--i~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN--IPFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 66666443 22211 12245789999999999988877663222 1223456788999999988643
No 79
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.55 E-value=7.7e-07 Score=88.51 Aligned_cols=175 Identities=18% Similarity=0.285 Sum_probs=99.3
Q ss_pred CCCCCceechhhHHHHHHhhhcc--C---------CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLE--S---------HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESN 253 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~--~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 253 (505)
.....+.|++.++++|.+.+... . ..++-+.|+|++|+|||+||+.++......|-.. . .
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v---~------~ 189 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV---V------G 189 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec---c------h
Confidence 34456899999999998876421 1 2245689999999999999999999876543211 0 0
Q ss_pred cccHHHHHHHHHHHHhCCCCccCCCCchHHH-HhccCCCeEEEEEeCCCCCH-------------H---HHHHHhcCcCC
Q 042739 254 KLGVIRVRDEVISQVLGENLKVGTLTIPQNI-KKGLQRMKVLIVLDDVHDEF-------------T---QLESLAGVIDR 316 (505)
Q Consensus 254 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l-~~~l~~~~~LlVlDdv~~~~-------------~---~~~~l~~~l~~ 316 (505)
..+ .....+. .......+ ...-...+.+|+||+++ .. . .+..++..+..
T Consensus 190 ----~~l----~~~~~g~-----~~~~i~~~f~~a~~~~p~il~iDEiD-~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 190 ----SEL----VRKYIGE-----GARLVREIFELAKEKAPSIIFIDEID-AIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred ----HHH----HHHhhhH-----HHHHHHHHHHHHHhcCCcEEEhhhhh-hhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 001 1110000 00001111 11123467899999993 21 1 12222222221
Q ss_pred C--CCCCEEEEEeCcchhh-----cccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCh
Q 042739 317 F--SPGSRIIITTRDKRVL-----DKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNP 385 (505)
Q Consensus 317 ~--~~~~~iliTsR~~~~~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (505)
. ..+..||.||...... ........+.++..+.++..++|..+..+...... .....+++.+.|..
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 1 2466778887754222 11123457899999999999999887744332211 12456777777764
No 80
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=6.8e-06 Score=85.99 Aligned_cols=199 Identities=12% Similarity=0.127 Sum_probs=110.8
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc--ccceEEEeecccccccccHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY--FQGNCFMANVREESNKLGVIRVRD 262 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~~ 262 (505)
.....++|-+..+..|.+.+..+ .-...+.++|+.|+||||+|..+++.+-.. .....|..... .+-+.-...+
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~---~~Cg~C~sC~ 88 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT---EPCGECESCR 88 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC---CCCccCHHHH
Confidence 44567999999999999988642 224568899999999999999999875321 10000110000 0000000011
Q ss_pred HHHHHHhCCC---C--ccCCCCchHHHHhcc-----CCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCc-c
Q 042739 263 EVISQVLGEN---L--KVGTLTIPQNIKKGL-----QRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRD-K 330 (505)
Q Consensus 263 ~ll~~~~~~~---~--~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~-~ 330 (505)
.+.......- + .....+.+..+.+.+ .+.+-++|+|+++ .+......|+..+......+.+|++|.+ .
T Consensus 89 ~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~ 168 (620)
T PRK14954 89 DFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELH 168 (620)
T ss_pred HHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 1100000000 0 000011112222222 2345588999995 3445566777777655556665555533 3
Q ss_pred hhhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHH
Q 042739 331 RVLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALE 389 (505)
Q Consensus 331 ~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 389 (505)
.+... ......+++.+++.++....+.+.+...+ .....+.+..|++.++|...-+.
T Consensus 169 kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg--i~I~~eal~~La~~s~Gdlr~al 226 (620)
T PRK14954 169 KIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG--IQIDADALQLIARKAQGSMRDAQ 226 (620)
T ss_pred hhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHHHHH
Confidence 33322 23456899999999999988887663211 12335678889999999776443
No 81
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=1.4e-05 Score=81.87 Aligned_cols=194 Identities=13% Similarity=0.114 Sum_probs=110.2
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc-----ccceEEEeecccccc--cccH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY-----FQGNCFMANVREESN--KLGV 257 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~--~~~~ 257 (505)
.....++|-+.....|.+++..+. -.+.+.++|+.|+||||+|+.++..+-.. .+++.- .++..... ..++
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c-~nc~~i~~g~~~d~ 90 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC-ENCVEIDKGSFPDL 90 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc-HHHHHHhcCCCCcE
Confidence 344568999999999999997432 25567889999999999999999875321 011100 00000000 0000
Q ss_pred HHHHHHHHHHHhCCCCccCCCCchHHHHhc-----cCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCc-c
Q 042739 258 IRVRDEVISQVLGENLKVGTLTIPQNIKKG-----LQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRD-K 330 (505)
Q Consensus 258 ~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~-~ 330 (505)
.. + ........+....+.+. ..+++-++|+|+++ -+......++..+...++...+|++|.+ .
T Consensus 91 ~e--------i--daas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~ 160 (486)
T PRK14953 91 IE--------I--DAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYD 160 (486)
T ss_pred EE--------E--eCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHH
Confidence 00 0 00000000101122221 12456799999995 2344556666666654555555555533 2
Q ss_pred hhhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHH
Q 042739 331 RVLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLG 392 (505)
Q Consensus 331 ~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 392 (505)
.+... ......+.+.+++.++....+...+-..+ .....+.+..|++.++|.+..+....
T Consensus 161 kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg--i~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 161 KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK--IEYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22221 12345799999999999999888763222 12234667889999999887655444
No 82
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.53 E-value=2.1e-06 Score=86.78 Aligned_cols=164 Identities=13% Similarity=0.176 Sum_probs=96.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccc--eEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhcc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQG--NCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGL 288 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l 288 (505)
...+.|+|++|+|||+|+..+++.+....+. .+++. ...+...+...+... ....+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~--------~~~~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----------SEKFTNDFVNALRNN--------KMEEFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----------HHHHHHHHHHHHHcC--------CHHHHHHHH
Confidence 4578899999999999999999987655432 23332 112222333332211 122333333
Q ss_pred CCCeEEEEEeCCCC---CHHHHHHHhcCcCCC-CCCCEEEEEeCcch---------hhcccCCCcEEEcCCCCHhHHHHH
Q 042739 289 QRMKVLIVLDDVHD---EFTQLESLAGVIDRF-SPGSRIIITTRDKR---------VLDKCEVSNIFEVKGLEHNKAFEL 355 (505)
Q Consensus 289 ~~~~~LlVlDdv~~---~~~~~~~l~~~l~~~-~~~~~iliTsR~~~---------~~~~~~~~~~~~l~~L~~~ea~~L 355 (505)
.+ .-+|+|||++. .....+.+...+... ..+..+|+|+.... +.+.+.....+.+++.+.++-.++
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 32 34899999951 111122233222211 23556888776431 122233345789999999999999
Q ss_pred HHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 042739 356 FCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSL 395 (505)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 395 (505)
+.+.+.... ....++.+..|++.+.|..-.|.-+...|
T Consensus 277 l~~~~~~~~--~~l~~e~l~~ia~~~~~~~r~l~~~l~~l 314 (405)
T TIGR00362 277 LQKKAEEEG--LELPDEVLEFIAKNIRSNVRELEGALNRL 314 (405)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 998874322 22346778889999999988766554433
No 83
>PRK06620 hypothetical protein; Validated
Probab=98.53 E-value=2.2e-06 Score=78.09 Aligned_cols=139 Identities=11% Similarity=0.081 Sum_probs=83.4
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCC
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRM 291 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~ 291 (505)
+.+.|+|++|+|||+|++.+++.... .++... . . ... .. +.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~---~--~-----~~~-----------------------~~-~~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI---F--F-----NEE-----------------------IL-EK 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchh---h--h-----chh-----------------------HH-hc
Confidence 67899999999999999987765432 121100 0 0 000 00 12
Q ss_pred eEEEEEeCCCCCHH--HHHHHhcCcCCCCCCCEEEEEeCcchh-------hcccCCCcEEEcCCCCHhHHHHHHHHhhcC
Q 042739 292 KVLIVLDDVHDEFT--QLESLAGVIDRFSPGSRIIITTRDKRV-------LDKCEVSNIFEVKGLEHNKAFELFCRKAFG 362 (505)
Q Consensus 292 ~~LlVlDdv~~~~~--~~~~l~~~l~~~~~~~~iliTsR~~~~-------~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 362 (505)
.-+|++||++ ..+ .+-.+...+. ..|..+|+|++.... .+.+....++++++++.++-.+++.+.+..
T Consensus 86 ~d~lliDdi~-~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 86 YNAFIIEDIE-NWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred CCEEEEeccc-cchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 2478899995 222 2222222222 346688998875532 222334457999999999988888777632
Q ss_pred CCCCChhHHHHHHHHHHHhcCChHHHHHHHHh
Q 042739 363 QNNRSHDLYQLSQRVVCYADGNPLALEVLGSS 394 (505)
Q Consensus 363 ~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 394 (505)
. .-.-.++..+.|++.+.|.--.+.-+...
T Consensus 163 ~--~l~l~~ev~~~L~~~~~~d~r~l~~~l~~ 192 (214)
T PRK06620 163 S--SVTISRQIIDFLLVNLPREYSKIIEILEN 192 (214)
T ss_pred c--CCCCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 1 11234577888888888877666554443
No 84
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=5.1e-06 Score=86.07 Aligned_cols=198 Identities=11% Similarity=0.100 Sum_probs=112.2
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEV 264 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 264 (505)
.....++|-+...+.|.+.+..+ .-.+.+.++|+.|+||||+|..+++.+-...... ..+-+.-.....+
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~---------~~pCg~C~sC~~i 82 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT---------GEPCNTCEQCRKV 82 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC---------CCCCcccHHHHHH
Confidence 34456899999999999988642 2256788999999999999999998753211000 0000000000011
Q ss_pred HHHHhCCCCccC-----CCCchHHHHhc-----cCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-hh
Q 042739 265 ISQVLGENLKVG-----TLTIPQNIKKG-----LQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK-RV 332 (505)
Q Consensus 265 l~~~~~~~~~~~-----~~~~~~~l~~~-----l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~ 332 (505)
..........+. ..+....+++. ..+++-++|||+++ .+......|+..+........+|++|.+. .+
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl 162 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF 162 (624)
T ss_pred hcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence 000000000000 00001112111 13456699999995 34455667777665544566666655543 33
Q ss_pred hcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCh-HHHHHHHHh
Q 042739 333 LDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNP-LALEVLGSS 394 (505)
Q Consensus 333 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~~~~ 394 (505)
... ......+++.+++.++..+.+...+.... .....+.+..|++.++|.+ .++..+...
T Consensus 163 l~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg--i~id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 163 PVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG--VDYDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred hHHHHhhhhccccCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 222 22345789999999999999987663322 1223567888999999976 566665443
No 85
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=1.1e-05 Score=82.72 Aligned_cols=188 Identities=16% Similarity=0.119 Sum_probs=114.2
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcc-cccc--eEEE---------------e
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISR-YFQG--NCFM---------------A 246 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~--~~~~---------------~ 246 (505)
...+.++|-+...+.|...+..+. -.+...++|+.|+|||++|+.++..+-. .... .|.. .
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 445678999999999999986432 3567789999999999999999987521 1100 0000 0
Q ss_pred ecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEE
Q 042739 247 NVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIII 325 (505)
Q Consensus 247 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~ili 325 (505)
.... ....+ .+.+++++..... .-..++.-++|+|+++ .+.+....|+..+...+..+.+|+
T Consensus 90 elda-as~~g-Id~IRelie~~~~---------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL 152 (535)
T PRK08451 90 EMDA-ASNRG-IDDIRELIEQTKY---------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFIL 152 (535)
T ss_pred Eecc-ccccC-HHHHHHHHHHHhh---------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEE
Confidence 0000 00001 1112222211100 0011345689999996 355666777777766566777777
Q ss_pred EeCcch-hhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHH
Q 042739 326 TTRDKR-VLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLG 392 (505)
Q Consensus 326 TsR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 392 (505)
+|.+.. +... ......+++.+++.++..+.+...+...+ ....++.+..|++.++|.+.-+..+.
T Consensus 153 ~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG--i~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 153 ATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG--VSYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred EECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 776542 1111 12346799999999999999987763322 12235678899999999996655443
No 86
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.52 E-value=2.6e-06 Score=93.08 Aligned_cols=193 Identities=13% Similarity=0.119 Sum_probs=105.0
Q ss_pred HHHHHHHhhccccccCCCCCCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccc------
Q 042739 166 LVEEIVADISKKLEDMSDSTDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYF------ 239 (505)
Q Consensus 166 ~~~~i~~~~~~~~~~~~~~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------ 239 (505)
.+++...+......+ ...+.++||+.++.++.+.|... ...-+.++|++|+|||+||..+++++....
T Consensus 169 ~l~~~~~~L~~~~r~----~~ld~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~ 242 (852)
T TIGR03345 169 ALDQYTTDLTAQARE----GKIDPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALR 242 (852)
T ss_pred hHHHHhhhHHHHhcC----CCCCcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCcccc
Confidence 444444444443332 34467999999999999988643 234567999999999999999999874331
Q ss_pred cceEEEeecccccc----cccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCC---------HHH
Q 042739 240 QGNCFMANVREESN----KLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDE---------FTQ 306 (505)
Q Consensus 240 ~~~~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---------~~~ 306 (505)
...+|..++..... ...+..-++.++.. +.+ .+.+++|+||++|.- .+.
T Consensus 243 ~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e----------------~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~ 304 (852)
T TIGR03345 243 NVRLLSLDLGLLQAGASVKGEFENRLKSVIDE----------------VKA--SPQPIILFIDEAHTLIGAGGQAGQGDA 304 (852)
T ss_pred CCeEEEeehhhhhcccccchHHHHHHHHHHHH----------------HHh--cCCCeEEEEeChHHhccCCCccccccH
Confidence 12233332222111 01111112222211 111 246899999999510 111
Q ss_pred HHHHhcCcCCCCCCCEEEEEeCcchhhc-------ccCCCcEEEcCCCCHhHHHHHHHHhhcC--CCCCChhHHHHHHHH
Q 042739 307 LESLAGVIDRFSPGSRIIITTRDKRVLD-------KCEVSNIFEVKGLEHNKAFELFCRKAFG--QNNRSHDLYQLSQRV 377 (505)
Q Consensus 307 ~~~l~~~l~~~~~~~~iliTsR~~~~~~-------~~~~~~~~~l~~L~~~ea~~L~~~~~~~--~~~~~~~~~~~~~~i 377 (505)
...|.+.+. ....++|-||....... .......+.+++++.++..+++...... ....-....+....+
T Consensus 305 ~n~Lkp~l~--~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~ 382 (852)
T TIGR03345 305 ANLLKPALA--RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAA 382 (852)
T ss_pred HHHhhHHhh--CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHH
Confidence 112333332 23456666665432111 1123458999999999999997544311 111112234555666
Q ss_pred HHHhcCC
Q 042739 378 VCYADGN 384 (505)
Q Consensus 378 ~~~~~G~ 384 (505)
++.+.++
T Consensus 383 ~~ls~ry 389 (852)
T TIGR03345 383 VELSHRY 389 (852)
T ss_pred HHHcccc
Confidence 6666555
No 87
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.49 E-value=1.8e-06 Score=93.43 Aligned_cols=171 Identities=15% Similarity=0.188 Sum_probs=94.7
Q ss_pred HHHHHHHhhccccccCCCCCCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccc------
Q 042739 166 LVEEIVADISKKLEDMSDSTDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYF------ 239 (505)
Q Consensus 166 ~~~~i~~~~~~~~~~~~~~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------ 239 (505)
.+++...+......+ ...+.++||+.++..+.+.|... ...-+.++|++|+|||++|..+++++....
T Consensus 164 ~l~~~~~~l~~~~r~----~~l~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~ 237 (731)
T TIGR02639 164 ALEKYTVDLTEKAKN----GKIDPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLK 237 (731)
T ss_pred HHHHHhhhHHHHHhc----CCCCcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhc
Confidence 444444444444332 33456999999999999988643 244567999999999999999999864321
Q ss_pred cceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhcc-CCCeEEEEEeCCCC----------CHHHHH
Q 042739 240 QGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGL-QRMKVLIVLDDVHD----------EFTQLE 308 (505)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~----------~~~~~~ 308 (505)
...+|..++...........-+.+ ....+.+.+ ..++++|+||+++. +.+...
T Consensus 238 ~~~~~~~~~~~l~a~~~~~g~~e~----------------~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~ 301 (731)
T TIGR02639 238 NAKIYSLDMGSLLAGTKYRGDFEE----------------RLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASN 301 (731)
T ss_pred CCeEEEecHHHHhhhccccchHHH----------------HHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHH
Confidence 233443322111100000000000 122222222 24578999999951 122233
Q ss_pred HHhcCcCCCCCCCEEEEEeCcchhhc-------ccCCCcEEEcCCCCHhHHHHHHHHhh
Q 042739 309 SLAGVIDRFSPGSRIIITTRDKRVLD-------KCEVSNIFEVKGLEHNKAFELFCRKA 360 (505)
Q Consensus 309 ~l~~~l~~~~~~~~iliTsR~~~~~~-------~~~~~~~~~l~~L~~~ea~~L~~~~~ 360 (505)
.+.+.+. ....++|-+|....... .......+++++++.++..+++....
T Consensus 302 ~L~~~l~--~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 302 LLKPALS--SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHh--CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 4444432 22345555554321100 01124579999999999999998654
No 88
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=2.6e-05 Score=82.16 Aligned_cols=183 Identities=14% Similarity=0.131 Sum_probs=110.6
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccccc----------------------ce
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQ----------------------GN 242 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~----------------------~~ 242 (505)
...+.++|-+...+.|...+..+ .-.+.+.++|+.|+|||++|..++..+-.... ..
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 34467899999999999999642 22567889999999999999999887531100 00
Q ss_pred EEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCC
Q 042739 243 CFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGS 321 (505)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~ 321 (505)
..+. ...... ...+++++..+... -..+++-++|||+++ .+......|+..+...+..+
T Consensus 93 ~~ld----~~~~~~-vd~Ir~li~~~~~~---------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 93 HELD----AASNNS-VDDIRNLIEQVRIP---------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred EEec----ccccCC-HHHHHHHHHHHhhC---------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 0000 000000 11111221111000 011345588999996 34556777777776655666
Q ss_pred EEEEEe-Ccchhhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHH
Q 042739 322 RIIITT-RDKRVLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEV 390 (505)
Q Consensus 322 ~iliTs-R~~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 390 (505)
.+|++| ....+... ......+++.+++.++..+.+.+.+...+ -....+.+..|+..++|...-+..
T Consensus 153 ifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg--i~i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 153 IFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG--ITAEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred EEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 666555 33333332 23456799999999999999987663222 122345678899999998765533
No 89
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=6.6e-06 Score=86.58 Aligned_cols=188 Identities=12% Similarity=0.108 Sum_probs=109.0
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEV 264 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 264 (505)
.....++|-+..++.|..++..+ .-.+.+.++|+.|+|||++|+.++..+-.......+- .+... ...
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~-pC~~C----------~~~ 82 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLE-PCQEC----------IEN 82 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCC-chhHH----------HHh
Confidence 34456899999999999999743 2356778999999999999999998753211100000 00000 000
Q ss_pred HHHHhCCCC-----ccC--CCCchHHHHhcc-----CCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeC-cc
Q 042739 265 ISQVLGENL-----KVG--TLTIPQNIKKGL-----QRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTR-DK 330 (505)
Q Consensus 265 l~~~~~~~~-----~~~--~~~~~~~l~~~l-----~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR-~~ 330 (505)
.....+ ... ..+....+.+.+ .+++-++|+|+++ -.......|+..+...+..+.+|++|. ..
T Consensus 83 ---~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~ 159 (725)
T PRK07133 83 ---VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVH 159 (725)
T ss_pred ---hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChh
Confidence 000000 000 001112222222 2456699999996 344566677776665455555555553 33
Q ss_pred hhhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHH
Q 042739 331 RVLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALE 389 (505)
Q Consensus 331 ~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 389 (505)
.+... ......+++.+++.++..+.+...+...+ .....+.+..+++.++|.+.-+.
T Consensus 160 KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg--I~id~eAl~~LA~lS~GslR~Al 217 (725)
T PRK07133 160 KIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN--ISYEKNALKLIAKLSSGSLRDAL 217 (725)
T ss_pred hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 33322 23456899999999999999887652222 12234567789999999876443
No 90
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=3.2e-05 Score=81.43 Aligned_cols=199 Identities=15% Similarity=0.124 Sum_probs=111.2
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEV 264 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 264 (505)
.....++|.+...+.|..++..+. -.+.+.++|+.|+|||++|+.++..+-.......-.. +-+.....+.+
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~-------~Cg~C~~C~~i 84 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPE-------PCGKCELCRAI 84 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCC-------CCcccHHHHHH
Confidence 344668999999999999997432 2457889999999999999999987533210000000 00000111111
Q ss_pred HHHHhCCCCcc-----CCCCchHHHHhcc-----CCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-hh
Q 042739 265 ISQVLGENLKV-----GTLTIPQNIKKGL-----QRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK-RV 332 (505)
Q Consensus 265 l~~~~~~~~~~-----~~~~~~~~l~~~l-----~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~ 332 (505)
........... ...+.+..+.+.+ .++.-++|||+++ .+.+....|+..+......+.+|++|.+. .+
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 11100000000 0000111121111 2345689999995 34456677777766545556555555433 22
Q ss_pred hcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHH
Q 042739 333 LDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGS 393 (505)
Q Consensus 333 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 393 (505)
... ......+++.+++.++....+...+...+. ....+.+..|++.++|.+..+..+..
T Consensus 165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi--~is~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI--EIEPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 222 223467888999999988888776632211 12245678899999998875544433
No 91
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.41 E-value=1.8e-06 Score=94.60 Aligned_cols=152 Identities=16% Similarity=0.150 Sum_probs=85.5
Q ss_pred CCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc-----c-cceEEEeecccccccccHHHHH
Q 042739 188 DGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY-----F-QGNCFMANVREESNKLGVIRVR 261 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f-~~~~~~~~~~~~~~~~~~~~~~ 261 (505)
++.+||+.+++++.+.|.... .+-+.++|++|+|||++|..++.++... . ...+|..+....
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l---------- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLL---------- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHH----------
Confidence 459999999999999997432 3456799999999999999999886431 1 133443322111
Q ss_pred HHHHHHHhCCCCccCCCCchHHHHhc-cCCCeEEEEEeCCCC---------CHHHHHHHhcCcCCCCCCCEEEEEeCcch
Q 042739 262 DEVISQVLGENLKVGTLTIPQNIKKG-LQRMKVLIVLDDVHD---------EFTQLESLAGVIDRFSPGSRIIITTRDKR 331 (505)
Q Consensus 262 ~~ll~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~---------~~~~~~~l~~~l~~~~~~~~iliTsR~~~ 331 (505)
+. +........+....+.+. ...++++|+||++|. ..+....|.+.+. ....++|.+|....
T Consensus 247 ---~a---g~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~e 318 (821)
T CHL00095 247 ---LA---GTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLDE 318 (821)
T ss_pred ---hc---cCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHHH
Confidence 00 000000000011222222 234689999999941 1112223333322 23356666665443
Q ss_pred hhc-------ccCCCcEEEcCCCCHhHHHHHHHHh
Q 042739 332 VLD-------KCEVSNIFEVKGLEHNKAFELFCRK 359 (505)
Q Consensus 332 ~~~-------~~~~~~~~~l~~L~~~ea~~L~~~~ 359 (505)
... .......+.+...+.++..+++...
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 211 1123456889999999988888643
No 92
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=2.6e-05 Score=81.38 Aligned_cols=192 Identities=11% Similarity=0.105 Sum_probs=109.8
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccccc-ceEEEeecccccccccHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQ-GNCFMANVREESNKLGVIRVRDE 263 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~~~ 263 (505)
.....++|.+...+.|.+++..+. -.+.+.++|+.|+|||++|+.++..+-...+ .+- .++ .......
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~---pC~-------~C~~C~~ 81 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE---PCN-------ECEICKA 81 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---CCC-------ccHHHHH
Confidence 455679999999999999997532 3567788999999999999999987532110 000 000 0000001
Q ss_pred HHHHHhCCCCcc-----CCCCchHHHHhc-----cCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-h
Q 042739 264 VISQVLGENLKV-----GTLTIPQNIKKG-----LQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK-R 331 (505)
Q Consensus 264 ll~~~~~~~~~~-----~~~~~~~~l~~~-----l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~-~ 331 (505)
+.......-... ...+....+++. ..++.-++|||+++ -+......|+..+...+..+.+|++|... .
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~k 161 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHK 161 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhh
Confidence 100000000000 001112222222 13456689999996 34455667776666545555555555333 2
Q ss_pred hhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHH
Q 042739 332 VLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALE 389 (505)
Q Consensus 332 ~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 389 (505)
+... ......+++.+++.++..+.+...+...+. ....+.+..|++.++|.+.-+.
T Consensus 162 i~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi--~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 162 IPATILSRCQRFDFKRISVEDIVERLKYILDKEGI--EYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred CcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 2222 223457889999999999998877632221 1234667788899999876543
No 93
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=2.1e-05 Score=81.86 Aligned_cols=190 Identities=14% Similarity=0.123 Sum_probs=112.8
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc-----ccceEEEeecccccccccHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY-----FQGNCFMANVREESNKLGVIR 259 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~ 259 (505)
.....++|-+..++.|..++..+. -.+.+.++|+.|+|||++|+.+++.+-.. .+++. ...+
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~-C~~C----------- 79 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE-CSSC----------- 79 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc-chHH-----------
Confidence 445678999999999999997432 35678899999999999999999875321 11100 0000
Q ss_pred HHHHHHHHHhCC---CCcc--CCCCchHHHHh-----ccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeC
Q 042739 260 VRDEVISQVLGE---NLKV--GTLTIPQNIKK-----GLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTR 328 (505)
Q Consensus 260 ~~~~ll~~~~~~---~~~~--~~~~~~~~l~~-----~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR 328 (505)
..+....... ..+. ...+....+.+ -..+++-++|+|+++ .+......|+..+...+....+|++|.
T Consensus 80 --~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tt 157 (563)
T PRK06647 80 --KSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATT 157 (563)
T ss_pred --HHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecC
Confidence 0000000000 0000 00001111111 113456689999996 345566777777766556666766664
Q ss_pred cc-hhhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHH
Q 042739 329 DK-RVLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVL 391 (505)
Q Consensus 329 ~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 391 (505)
+. .+... ......+++.+++.++..+.+...+...+ ....++.+..|++.++|.+..+..+
T Consensus 158 e~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg--i~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 158 EVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ--IKYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred ChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 43 22222 12345789999999999999987763322 1234567788999999988655433
No 94
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=1.4e-05 Score=77.65 Aligned_cols=94 Identities=9% Similarity=0.105 Sum_probs=64.4
Q ss_pred eEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcch-hhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCCh
Q 042739 292 KVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDKR-VLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSH 368 (505)
Q Consensus 292 ~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~ 368 (505)
+-++|||+++ .+......++..+...+.++.+|++|.+.. +++. ......+.+.+++.+++.+.+..... .
T Consensus 107 ~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~--~---- 180 (328)
T PRK05707 107 RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP--E---- 180 (328)
T ss_pred CeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc--c----
Confidence 4455789996 466777788877776666777777777653 3322 23456799999999999999976531 1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHH
Q 042739 369 DLYQLSQRVVCYADGNPLALEVL 391 (505)
Q Consensus 369 ~~~~~~~~i~~~~~G~PLal~~~ 391 (505)
...+.+..++..++|.|+....+
T Consensus 181 ~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CChHHHHHHHHHcCCCHHHHHHH
Confidence 11234567788999999755443
No 95
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=1.2e-05 Score=81.63 Aligned_cols=185 Identities=15% Similarity=0.175 Sum_probs=109.4
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccc------cceE--------------E
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYF------QGNC--------------F 244 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~--------------~ 244 (505)
...+.++|.+..++.|.+.+..+. -.+.+.++|++|+|||++|..+++.+-..- +++. |
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce
Confidence 345679999999999999996422 246788999999999999999998753210 0000 0
Q ss_pred EeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEE
Q 042739 245 MANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRI 323 (505)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~i 323 (505)
+. +... ...+ .+.++++...+. ..-..+.+-++|+|+++ ........|...+........+
T Consensus 93 ~~-i~g~-~~~g-id~ir~i~~~l~---------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~ 154 (451)
T PRK06305 93 LE-IDGA-SHRG-IEDIRQINETVL---------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF 154 (451)
T ss_pred EE-eecc-ccCC-HHHHHHHHHHHH---------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceE
Confidence 00 0000 0000 011111111100 00012456689999994 2344556666666655556667
Q ss_pred EEEeCcc-hhhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHH
Q 042739 324 IITTRDK-RVLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEV 390 (505)
Q Consensus 324 liTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 390 (505)
|++|.+. .+... ......+++.+++.++..+.+...+...+ .....+.+..|++.++|.+.-+..
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg--~~i~~~al~~L~~~s~gdlr~a~~ 221 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG--IETSREALLPIARAAQGSLRDAES 221 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 7666432 22222 12345799999999999998887663221 123456788899999998764433
No 96
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.39 E-value=7.7e-07 Score=74.37 Aligned_cols=90 Identities=23% Similarity=0.474 Sum_probs=48.0
Q ss_pred ccEEEcccccccccchHHHHHHHHHhc-------Ccce-e---------eccccccCCCchhHHHHHHHhhcceEEEEec
Q 042739 16 YEVFLSFRGEDTRNGFTSHLAAALHRK-------QIQF-F---------IDDEELKKGDEISPALSNAIETTDISIIIFS 78 (505)
Q Consensus 16 ~dvFisy~~~D~~~~~~~~l~~~L~~~-------g~~~-~---------~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~s 78 (505)
|+|||||++.|.. .++..|...+... .+.. | -+..+....+.+...|.+.|.+|.++||++|
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5799999999854 3677777777663 2211 1 1222222344789999999999999999999
Q ss_pred CCcccchhhHHHHHHHHHhhhhCCCeEEEEEe
Q 042739 79 KGYASSKWCLNELVKTLDCKRTNGQIVIPVFY 110 (505)
Q Consensus 79 ~~~~~s~~~~~El~~~~~~~~~~~~~v~pv~~ 110 (505)
++-..|.|+..|+..+++ .+..||-|..
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~ 107 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVYL 107 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEET
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEEC
Confidence 999999999999998876 4445777754
No 97
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.37 E-value=7.1e-06 Score=83.06 Aligned_cols=157 Identities=13% Similarity=0.128 Sum_probs=90.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCC
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQR 290 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~ 290 (505)
...+.|+|++|+|||+|+..+++.+.......+++. ...+...+...+.. .....++..+..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~----------~~~f~~~~~~~l~~--------~~~~~f~~~~~~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR----------SELFTEHLVSAIRS--------GEMQRFRQFYRN 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee----------HHHHHHHHHHHHhc--------chHHHHHHHccc
Confidence 356889999999999999999998765433334443 11222233222211 012334443333
Q ss_pred CeEEEEEeCCCC---CHHHHHHHhcCcCC-CCCCCEEEEEeCcc---------hhhcccCCCcEEEcCCCCHhHHHHHHH
Q 042739 291 MKVLIVLDDVHD---EFTQLESLAGVIDR-FSPGSRIIITTRDK---------RVLDKCEVSNIFEVKGLEHNKAFELFC 357 (505)
Q Consensus 291 ~~~LlVlDdv~~---~~~~~~~l~~~l~~-~~~~~~iliTsR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L~~ 357 (505)
.-+|+|||++. .....+.+...+.. ...+..||+||... .+.+.+.....+++.+++.++-.+++.
T Consensus 203 -~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 203 -VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred -CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 44888999951 11122222222211 12456788888543 122233445689999999999999998
Q ss_pred HhhcCCCCCChhHHHHHHHHHHHhcCChHHH
Q 042739 358 RKAFGQNNRSHDLYQLSQRVVCYADGNPLAL 388 (505)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (505)
+.+-..+ ....++.+..|+..+.|+--.|
T Consensus 282 ~k~~~~~--~~l~~evl~~la~~~~~dir~L 310 (445)
T PRK12422 282 RKAEALS--IRIEETALDFLIEALSSNVKSL 310 (445)
T ss_pred HHHHHcC--CCCCHHHHHHHHHhcCCCHHHH
Confidence 8773322 2233566777877777775333
No 98
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.37 E-value=5e-06 Score=83.13 Aligned_cols=173 Identities=20% Similarity=0.307 Sum_probs=96.4
Q ss_pred CCCCceechhhHHHHHHhhhc-----------cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeeccccccc
Q 042739 186 DLDGFIGINSRIEEIKSLLCL-----------ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNK 254 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 254 (505)
..+.+.|++.++++|.+.+.. +-..++-+.|+|++|+|||+||+.+++.....|- .+. ..
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i---~v~-~~----- 199 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI---RVV-GS----- 199 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE---Eee-hH-----
Confidence 345688999999999887632 1123567899999999999999999998654321 111 10
Q ss_pred ccHHHHHHHHHHHHhCCCCccCCCCchHHH-HhccCCCeEEEEEeCCCCCH-------------HH---HHHHhcCcCCC
Q 042739 255 LGVIRVRDEVISQVLGENLKVGTLTIPQNI-KKGLQRMKVLIVLDDVHDEF-------------TQ---LESLAGVIDRF 317 (505)
Q Consensus 255 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l-~~~l~~~~~LlVlDdv~~~~-------------~~---~~~l~~~l~~~ 317 (505)
.+.....+. .......+ ...-...+.+|+||++ +.. .. +..++..+...
T Consensus 200 --------~l~~~~~g~-----~~~~i~~~f~~a~~~~p~IlfiDEi-D~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 200 --------ELVQKFIGE-----GARLVRELFELAREKAPSIIFIDEI-DAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred --------HHhHhhccc-----hHHHHHHHHHHHHhcCCeEEEEech-hhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 011111000 00011111 1112346789999999 322 11 12222222211
Q ss_pred --CCCCEEEEEeCcchhhcc-----cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCC
Q 042739 318 --SPGSRIIITTRDKRVLDK-----CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGN 384 (505)
Q Consensus 318 --~~~~~iliTsR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 384 (505)
..+..||.||........ ......+++++.+.++-.++|..+..+...... .....+++.+.|.
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g~ 336 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD---VDLEELAELTEGA 336 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCCC
Confidence 235567777765422211 123457999999999999999887743322111 1245566667665
No 99
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.33 E-value=5.5e-06 Score=78.39 Aligned_cols=153 Identities=12% Similarity=0.150 Sum_probs=80.0
Q ss_pred CceechhhHHHHHHhhhc-------------cCCCceEEEEeccCcchHHHHHHHHHhhhcccc--cceEEEeecccccc
Q 042739 189 GFIGINSRIEEIKSLLCL-------------ESHDARIVGIWGMGGIGKTTIASVVFHQISRYF--QGNCFMANVREESN 253 (505)
Q Consensus 189 ~fvGR~~el~~l~~~L~~-------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~ 253 (505)
.++|.+...++|.+.... ..+....+.++|++|+|||++|+.++..+.... ....++. ...
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~----~~~ 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE----VER 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE----ecH
Confidence 367777666665543210 122356788999999999999999998753211 1112221 000
Q ss_pred cccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCC---------CHHHHHHHhcCcCCCCCCCEEE
Q 042739 254 KLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHD---------EFTQLESLAGVIDRFSPGSRII 324 (505)
Q Consensus 254 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~---------~~~~~~~l~~~l~~~~~~~~il 324 (505)
.. +.....+.. ......+.+... ..+|+||+++. ..+.+..+...+........++
T Consensus 83 ----~~----l~~~~~g~~-----~~~~~~~~~~a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vi 147 (261)
T TIGR02881 83 ----AD----LVGEYIGHT-----AQKTREVIKKAL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLI 147 (261)
T ss_pred ----HH----hhhhhccch-----HHHHHHHHHhcc--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEE
Confidence 00 111111100 001111212112 34899999941 1234555655554433444555
Q ss_pred EEeCcchhh------ccc--CCCcEEEcCCCCHhHHHHHHHHhh
Q 042739 325 ITTRDKRVL------DKC--EVSNIFEVKGLEHNKAFELFCRKA 360 (505)
Q Consensus 325 iTsR~~~~~------~~~--~~~~~~~l~~L~~~ea~~L~~~~~ 360 (505)
+++.....- +.+ .....+.+++++.++-.+++.+.+
T Consensus 148 la~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~ 191 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMV 191 (261)
T ss_pred ecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHH
Confidence 655432210 001 123468999999999999998776
No 100
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=2.7e-05 Score=81.67 Aligned_cols=185 Identities=13% Similarity=0.111 Sum_probs=107.2
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc-c----cceEEEeecccccccccHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY-F----QGNCFMANVREESNKLGVIR 259 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f----~~~~~~~~~~~~~~~~~~~~ 259 (505)
.....++|-+...+.|.+.+..+ .-.+.+.++|+.|+||||+|+.++..+-.. . +++. + .
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~--c------------~ 77 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV--C------------P 77 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc--c------------H
Confidence 44567999999999999998743 225677899999999999999999875321 1 0000 0 0
Q ss_pred HHHHHHHHHhCCC---Ccc--CCCCchHHHHhcc-----CCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeC
Q 042739 260 VRDEVISQVLGEN---LKV--GTLTIPQNIKKGL-----QRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTR 328 (505)
Q Consensus 260 ~~~~ll~~~~~~~---~~~--~~~~~~~~l~~~l-----~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR 328 (505)
....+...-.... +.. ...+....+++.+ .++.-++|||+++ .+......|+..+......+.+|++|.
T Consensus 78 ~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred HHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeC
Confidence 0000000000000 000 0000111222211 2345589999996 344556677777765556666666554
Q ss_pred c-chhhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChH
Q 042739 329 D-KRVLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPL 386 (505)
Q Consensus 329 ~-~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 386 (505)
+ ..+... ......+++.+++.++....+...+...+ .....+.+..|++.++|...
T Consensus 158 ~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg--i~i~~~al~~la~~a~G~lr 215 (576)
T PRK14965 158 EPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG--ISISDAALALVARKGDGSMR 215 (576)
T ss_pred ChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCCHH
Confidence 3 333322 22345788999999999988877653222 12235667788999999764
No 101
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.33 E-value=0.00023 Score=69.87 Aligned_cols=105 Identities=13% Similarity=0.099 Sum_probs=68.1
Q ss_pred eEEEEEeCCCC---C-H---HHHHHHhcCcCCCCCCCEEEEEeCcchhhc----cc--CCCcEEEcCCCCHhHHHHHHHH
Q 042739 292 KVLIVLDDVHD---E-F---TQLESLAGVIDRFSPGSRIIITTRDKRVLD----KC--EVSNIFEVKGLEHNKAFELFCR 358 (505)
Q Consensus 292 ~~LlVlDdv~~---~-~---~~~~~l~~~l~~~~~~~~iliTsR~~~~~~----~~--~~~~~~~l~~L~~~ea~~L~~~ 358 (505)
+-+|||||+.. . . +.+..+...+.. ++--+||++|-+..... .+ ...+.+.|...+.+.|.+++..
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 67999999941 1 1 122222222221 34457888887653322 22 2446789999999999999998
Q ss_pred hhcCCCCC------------------ChhHHHHHHHHHHHhcCChHHHHHHHHhhcC
Q 042739 359 KAFGQNNR------------------SHDLYQLSQRVVCYADGNPLALEVLGSSLYQ 397 (505)
Q Consensus 359 ~~~~~~~~------------------~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~ 397 (505)
++...... ...........++.+||--.=|+.+++.++.
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 88432110 0124455677888999999999999998865
No 102
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.33 E-value=9.4e-06 Score=79.30 Aligned_cols=150 Identities=15% Similarity=0.197 Sum_probs=87.2
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEV 264 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 264 (505)
...+.++|.+...+.+..++..+ .-..++.++|++|+|||++|..+++.....+ ..+. ... .. ....+..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~~~----~~-~~~i~~~ 87 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-GSD----CR-IDFVRNR 87 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-cCc----cc-HHHHHHH
Confidence 44567899999999999998742 2356777899999999999999998763321 2222 111 11 1222221
Q ss_pred HHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCC--CHHHHHHHhcCcCCCCCCCEEEEEeCcchhh-cc-cCCCc
Q 042739 265 ISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHD--EFTQLESLAGVIDRFSPGSRIIITTRDKRVL-DK-CEVSN 340 (505)
Q Consensus 265 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~-~~-~~~~~ 340 (505)
+....... .+.+.+-+||||+++. ..+....+...+.....++.+|+||...... .. .....
T Consensus 88 l~~~~~~~--------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 88 LTRFASTV--------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHHHHHhh--------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 21111000 0113355899999941 2233344444444445677888888654211 11 12234
Q ss_pred EEEcCCCCHhHHHHHHHH
Q 042739 341 IFEVKGLEHNKAFELFCR 358 (505)
Q Consensus 341 ~~~l~~L~~~ea~~L~~~ 358 (505)
.+.++..+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 678888888887766554
No 103
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.30 E-value=4.9e-05 Score=68.75 Aligned_cols=181 Identities=14% Similarity=0.155 Sum_probs=102.1
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCC-ccCC--CCchHHHH
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENL-KVGT--LTIPQNIK 285 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~~--~~~~~~l~ 285 (505)
.+.+++.|+|.-|.|||.+++.....+.+.-...+.+. ....+...+...++..+...+. .... ......+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 45679999999999999999955444433222222222 2334445555566665554221 1110 01122222
Q ss_pred hcc-CCCe-EEEEEeCCC-CCHH---HHHHHhcCcCCCCCCCEEEEEeCcc-------hhhccc-CCCcE-EEcCCCCHh
Q 042739 286 KGL-QRMK-VLIVLDDVH-DEFT---QLESLAGVIDRFSPGSRIIITTRDK-------RVLDKC-EVSNI-FEVKGLEHN 350 (505)
Q Consensus 286 ~~l-~~~~-~LlVlDdv~-~~~~---~~~~l~~~l~~~~~~~~iliTsR~~-------~~~~~~-~~~~~-~~l~~L~~~ 350 (505)
+.. ++++ ..+++|+.+ -..+ .+..|...-...+...+|+.....+ ...... ..... |+++|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 222 3555 999999997 2233 3333333322223333455443322 011111 12234 899999999
Q ss_pred HHHHHHHHhhcCCCCC-ChhHHHHHHHHHHHhcCChHHHHHHHHh
Q 042739 351 KAFELFCRKAFGQNNR-SHDLYQLSQRVVCYADGNPLALEVLGSS 394 (505)
Q Consensus 351 ea~~L~~~~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~~~~ 394 (505)
+...++..+..+...+ +-...+....|.....|.|.++..++..
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 9999998887444322 2234567788999999999999988753
No 104
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=9.4e-05 Score=71.46 Aligned_cols=195 Identities=12% Similarity=0.082 Sum_probs=111.5
Q ss_pred CCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc---------------ccceEEEeeccccc
Q 042739 188 DGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY---------------FQGNCFMANVREES 252 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------f~~~~~~~~~~~~~ 252 (505)
..++|-+...+.|.+.+..+. -.+...++|+.|+||+++|..++..+-.. ++...|+.......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 358899999999999997432 25789999999999999999999875221 23333332110000
Q ss_pred ccccHHHHHHHHHHHHhCCCCccCCC--CchHHHHhccC-----CCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEE
Q 042739 253 NKLGVIRVRDEVISQVLGENLKVGTL--TIPQNIKKGLQ-----RMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRII 324 (505)
Q Consensus 253 ~~~~~~~~~~~ll~~~~~~~~~~~~~--~~~~~l~~~l~-----~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~il 324 (505)
. .... ...+............. +.+..+.+.+. +.+-++|+|+++ .+......|+..+...+ .+.+|
T Consensus 83 g-~~~~---~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 83 G-KLIT---ASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred c-cccc---hhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 0 0000 00000000000000011 11223333332 456689999995 45556667777666555 44555
Q ss_pred EEeCc-chhhccc-CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHH
Q 042739 325 ITTRD-KRVLDKC-EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGS 393 (505)
Q Consensus 325 iTsR~-~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 393 (505)
++|.+ ..+++.+ .....+++.+++.++..+.+.+..... .. ......++..++|.|.....+..
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~--~~---~~~~~~l~~~a~Gs~~~al~~l~ 223 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE--IL---NINFPELLALAQGSPGAAIANIE 223 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc--cc---hhHHHHHHHHcCCCHHHHHHHHH
Confidence 55543 3333322 345689999999999999998765211 11 11235788999999976655443
No 105
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.30 E-value=1.3e-05 Score=78.65 Aligned_cols=162 Identities=14% Similarity=0.156 Sum_probs=95.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccC
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQ 289 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~ 289 (505)
....+.|+|+.|.|||.|++.+++......+...++. .+ ...+...++..+.. ...+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~~----se~f~~~~v~a~~~--------~~~~~Fk~~y- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----LT----SEDFTNDFVKALRD--------NEMEKFKEKY- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----cc----HHHHHHHHHHHHHh--------hhHHHHHHhh-
Confidence 3678999999999999999999999877766433332 11 12222333333221 1134455555
Q ss_pred CCeEEEEEeCCC---CCHHHHHHHhcCcCCC-CCCCEEEEEeCcc---------hhhcccCCCcEEEcCCCCHhHHHHHH
Q 042739 290 RMKVLIVLDDVH---DEFTQLESLAGVIDRF-SPGSRIIITTRDK---------RVLDKCEVSNIFEVKGLEHNKAFELF 356 (505)
Q Consensus 290 ~~~~LlVlDdv~---~~~~~~~~l~~~l~~~-~~~~~iliTsR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L~ 356 (505)
.--++++||++ ......+.+...++.. ..|..||+|++.. .+.+.+...-.+++.+++.+....++
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 33489999996 2212233333333222 3445899998654 22333445678999999999999999
Q ss_pred HHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHH
Q 042739 357 CRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVL 391 (505)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 391 (505)
.+.+.... -...++...-|++....+=..|..+
T Consensus 254 ~kka~~~~--~~i~~ev~~~la~~~~~nvReLega 286 (408)
T COG0593 254 RKKAEDRG--IEIPDEVLEFLAKRLDRNVRELEGA 286 (408)
T ss_pred HHHHHhcC--CCCCHHHHHHHHHHhhccHHHHHHH
Confidence 88662222 1122355555655555554444333
No 106
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.27 E-value=9.2e-06 Score=75.07 Aligned_cols=181 Identities=18% Similarity=0.204 Sum_probs=110.9
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhc--ccccceEEEeecccccccccHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQIS--RYFQGNCFMANVREESNKLGVIRVRD 262 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~~~~~~~~~~~~~~~~~~ 262 (505)
...+.++|-+..++.|.+.+.. ...+....+||+|.|||+-|..+++.+- +-|++++.-.+. +...+.. +.+
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna---SderGis-vvr 106 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA---SDERGIS-VVR 106 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc---ccccccc-chh
Confidence 4556799999999999999875 4577889999999999999999998753 234443332211 1111111 000
Q ss_pred HHHHHHhCCCCccCCCCchHHHHhcc---CC---Ce-EEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-hhh
Q 042739 263 EVISQVLGENLKVGTLTIPQNIKKGL---QR---MK-VLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK-RVL 333 (505)
Q Consensus 263 ~ll~~~~~~~~~~~~~~~~~~l~~~l---~~---~~-~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~ 333 (505)
+=+ .+ .+.+.... .+ .+ -++|||+++ ...+.|..+...+...+...+.++.+..- .+.
T Consensus 107 ~Ki----------k~---fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii 173 (346)
T KOG0989|consen 107 EKI----------KN---FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRII 173 (346)
T ss_pred hhh----------cC---HHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCC
Confidence 000 00 11111111 01 12 489999995 45677888887777766666665544432 111
Q ss_pred cc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChH
Q 042739 334 DK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPL 386 (505)
Q Consensus 334 ~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 386 (505)
.. ......+..++|..++..+-+...+-. .......+..+.|++.++|--.
T Consensus 174 ~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~--E~v~~d~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 174 RPLVSRCQKFRFKKLKDEDIVDRLEKIASK--EGVDIDDDALKLIAKISDGDLR 225 (346)
T ss_pred hHHHhhHHHhcCCCcchHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHcCCcHH
Confidence 11 122345889999999998888877732 2233446778889999988643
No 107
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.26 E-value=4.4e-05 Score=84.10 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=86.3
Q ss_pred CCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccc------cceEEEeecccccccccHHH
Q 042739 186 DLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYF------QGNCFMANVREESNKLGVIR 259 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 259 (505)
..+.++||+.++.++...|... ....+.++|++|+|||+||..++.++...+ ...+|..++...
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l-------- 240 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL-------- 240 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH--------
Confidence 3456999999999999999743 234566899999999999999999865431 123333322111
Q ss_pred HHHHHHHHHhCCCCccCCCCchHHHHhcc--CCCeEEEEEeCCCCC---------HHHHHHHhcCcCCCCCCCEEEEEeC
Q 042739 260 VRDEVISQVLGENLKVGTLTIPQNIKKGL--QRMKVLIVLDDVHDE---------FTQLESLAGVIDRFSPGSRIIITTR 328 (505)
Q Consensus 260 ~~~~ll~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~---------~~~~~~l~~~l~~~~~~~~iliTsR 328 (505)
+. +.............+.+.+ .+++.+|+||+++.- .+....+.+.+. ....++|.+|.
T Consensus 241 -----~a---~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaTt 310 (852)
T TIGR03346 241 -----IA---GAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGATT 310 (852)
T ss_pred -----hh---cchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeCc
Confidence 00 0000000000112222222 246899999999510 112233333321 22345555554
Q ss_pred cchhhc-------ccCCCcEEEcCCCCHhHHHHHHHHhh
Q 042739 329 DKRVLD-------KCEVSNIFEVKGLEHNKAFELFCRKA 360 (505)
Q Consensus 329 ~~~~~~-------~~~~~~~~~l~~L~~~ea~~L~~~~~ 360 (505)
....-. .......+.++..+.++..+++....
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 432211 11233568899999999999887653
No 108
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.25 E-value=2.8e-05 Score=85.31 Aligned_cols=169 Identities=14% Similarity=0.107 Sum_probs=92.0
Q ss_pred HHHHHHHhhccccccCCCCCCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccc------
Q 042739 166 LVEEIVADISKKLEDMSDSTDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYF------ 239 (505)
Q Consensus 166 ~~~~i~~~~~~~~~~~~~~~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------ 239 (505)
.+++...+......+ ...+.++||+.++.++.+.|... ....+.++|++|+|||+||..++.++....
T Consensus 160 ~l~~~~~~l~~~~r~----~~l~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~ 233 (857)
T PRK10865 160 ALKKYTIDLTERAEQ----GKLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLK 233 (857)
T ss_pred HHHHHhhhHHHHHhc----CCCCcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhC
Confidence 444444444443332 33456999999999999999743 244566999999999999999999875421
Q ss_pred cceEEEeeccccccc----ccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCC---------CHHH
Q 042739 240 QGNCFMANVREESNK----LGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHD---------EFTQ 306 (505)
Q Consensus 240 ~~~~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~---------~~~~ 306 (505)
...+|..++...... ..+...++.++.. +. -.+.+++|++|++|. ..+.
T Consensus 234 ~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~----------------~~--~~~~~~ILfIDEih~l~~~~~~~~~~d~ 295 (857)
T PRK10865 234 GRRVLALDMGALVAGAKYRGEFEERLKGVLND----------------LA--KQEGNVILFIDELHTMVGAGKADGAMDA 295 (857)
T ss_pred CCEEEEEehhhhhhccchhhhhHHHHHHHHHH----------------HH--HcCCCeEEEEecHHHhccCCCCccchhH
Confidence 123333322211100 0011111111111 11 124689999999951 0112
Q ss_pred HHHHhcCcCCCCCCCEEEEEeCcchhhc-------ccCCCcEEEcCCCCHhHHHHHHHHhh
Q 042739 307 LESLAGVIDRFSPGSRIIITTRDKRVLD-------KCEVSNIFEVKGLEHNKAFELFCRKA 360 (505)
Q Consensus 307 ~~~l~~~l~~~~~~~~iliTsR~~~~~~-------~~~~~~~~~l~~L~~~ea~~L~~~~~ 360 (505)
...+.+.+. ....++|-+|....... .......+.+...+.++..++++...
T Consensus 296 ~~~lkp~l~--~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 296 GNMLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHhcchhh--cCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 333333332 23455665555443210 01123356777778899988886554
No 109
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.25 E-value=1.7e-05 Score=80.89 Aligned_cols=160 Identities=19% Similarity=0.334 Sum_probs=87.6
Q ss_pred CCCCceechhhHHHHHHhhhc-----------cCCCceEEEEeccCcchHHHHHHHHHhhhcccc-----cceEEEeecc
Q 042739 186 DLDGFIGINSRIEEIKSLLCL-----------ESHDARIVGIWGMGGIGKTTIASVVFHQISRYF-----QGNCFMANVR 249 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~~~~~~ 249 (505)
....+.|.+..++++.+.+.. +-..++-+.|+|++|+|||++|+.+++.+...+ ....|+. +.
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~ 258 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IK 258 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-cc
Confidence 335577899999998887632 112356689999999999999999999875542 1223332 11
Q ss_pred cccccccHHHHHHHHHHHHhCCCCccCCCC-chHHHHhc-cCCCeEEEEEeCCCCCH--------------HHHHHHhcC
Q 042739 250 EESNKLGVIRVRDEVISQVLGENLKVGTLT-IPQNIKKG-LQRMKVLIVLDDVHDEF--------------TQLESLAGV 313 (505)
Q Consensus 250 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~~l~~~-l~~~~~LlVlDdv~~~~--------------~~~~~l~~~ 313 (505)
. . +++....+... .... .....+.. ..+++++|+||+++ .. ..+..++..
T Consensus 259 ~---~--------eLl~kyvGete--~~ir~iF~~Ar~~a~~g~p~IIfIDEiD-~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 259 G---P--------ELLNKYVGETE--RQIRLIFQRAREKASDGRPVIVFFDEMD-SIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred c---h--------hhcccccchHH--HHHHHHHHHHHHHhhcCCCceEEEehhh-hhhcccCCCccchHHHHHHHHHHHH
Confidence 1 0 00000000000 0000 01111211 23578999999994 11 112234333
Q ss_pred cCCCC--CCCEEEEEeCcchhhc-c----cCCCcEEEcCCCCHhHHHHHHHHhh
Q 042739 314 IDRFS--PGSRIIITTRDKRVLD-K----CEVSNIFEVKGLEHNKAFELFCRKA 360 (505)
Q Consensus 314 l~~~~--~~~~iliTsR~~~~~~-~----~~~~~~~~l~~L~~~ea~~L~~~~~ 360 (505)
+.... .+..||.||.....+. . ......++++..+.++..++|..+.
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 33222 3444555554332211 1 1234569999999999999998887
No 110
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=98.23 E-value=1.8e-06 Score=74.38 Aligned_cols=65 Identities=25% Similarity=0.417 Sum_probs=57.3
Q ss_pred cEEEcccccccc-cchHHHHHHHHHhc-CcceeeccccccC--CCchhHHHHHHHhhcceEEEEecCCc
Q 042739 17 EVFLSFRGEDTR-NGFTSHLAAALHRK-QIQFFIDDEELKK--GDEISPALSNAIETTDISIIIFSKGY 81 (505)
Q Consensus 17 dvFisy~~~D~~-~~~~~~l~~~L~~~-g~~~~~d~~~~~~--g~~~~~~i~~~i~~s~~~i~v~s~~~ 81 (505)
.|||||++.... ..+|..|+..|+.. |+.|.+|.|+... +..+..++.+.+++++.+|+|+||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 599999995543 35899999999999 9999999999854 77999999999999999999999655
No 111
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=0.00011 Score=70.82 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=65.2
Q ss_pred CCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-hhhccc-CCCcEEEcCCCCHhHHHHHHHHhhcCCCCC
Q 042739 290 RMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK-RVLDKC-EVSNIFEVKGLEHNKAFELFCRKAFGQNNR 366 (505)
Q Consensus 290 ~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 366 (505)
++.-++|||+++ .+......|+..+...+.++.+|++|.+. .+++.+ .....+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 345699999995 45566777777777666777777777654 333332 345678999999999998886532 1
Q ss_pred ChhHHHHHHHHHHHhcCChHHHHHHH
Q 042739 367 SHDLYQLSQRVVCYADGNPLALEVLG 392 (505)
Q Consensus 367 ~~~~~~~~~~i~~~~~G~PLal~~~~ 392 (505)
+ ...+..++..++|.|+....+.
T Consensus 187 ~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 2336678999999998664443
No 112
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.16 E-value=2e-05 Score=83.27 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=39.8
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+.++|++..+..+.+.+.. .....+.|+|++|+||||||+.+....
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4456799999999998877753 335679999999999999999988754
No 113
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.16 E-value=7.1e-05 Score=70.24 Aligned_cols=195 Identities=13% Similarity=0.114 Sum_probs=109.7
Q ss_pred hhHHHHHHhhhcc-CCCceEEEEeccCcchHHHHHHHHHhhhcccccce-----EEEeecccccccccHHHHHHHHHHHH
Q 042739 195 SRIEEIKSLLCLE-SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGN-----CFMANVREESNKLGVIRVRDEVISQV 268 (505)
Q Consensus 195 ~el~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-----~~~~~~~~~~~~~~~~~~~~~ll~~~ 268 (505)
..++.|.+++... ....+.+.|+|.+|+|||+++++|.......++.. +++. +.....+...+...++..+
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~v---q~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYV---QMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEE---ecCCCCChHHHHHHHHHHh
Confidence 4456666666543 23467899999999999999999998764433211 1211 2566778888999999998
Q ss_pred hCCCCccCCCCc-hHHHHhccCC-CeEEEEEeCCCC----CHHHHHHHhcCcCCCCC---CCEEEEEeCcchhhccc---
Q 042739 269 LGENLKVGTLTI-PQNIKKGLQR-MKVLIVLDDVHD----EFTQLESLAGVIDRFSP---GSRIIITTRDKRVLDKC--- 336 (505)
Q Consensus 269 ~~~~~~~~~~~~-~~~l~~~l~~-~~~LlVlDdv~~----~~~~~~~l~~~l~~~~~---~~~iliTsR~~~~~~~~--- 336 (505)
.-.......... .......++. +.-+||||++|+ +......++..+...++ -+-|.+-|++...+-..
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 766543333333 3333344443 345999999962 22222223222222222 23344555443111110
Q ss_pred --CCCcEEEcCCCCHhH-HHHHHHHhh--cC-CCCCChhHHHHHHHHHHHhcCChHHHHHHH
Q 042739 337 --EVSNIFEVKGLEHNK-AFELFCRKA--FG-QNNRSHDLYQLSQRVVCYADGNPLALEVLG 392 (505)
Q Consensus 337 --~~~~~~~l~~L~~~e-a~~L~~~~~--~~-~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 392 (505)
+....+.|+....++ ...|+.... .+ .....-...+++..|...++|+.--+..+.
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll 262 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLL 262 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 123457777766554 444443322 11 111122346789999999999987665444
No 114
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.14 E-value=2.1e-05 Score=84.41 Aligned_cols=152 Identities=16% Similarity=0.250 Sum_probs=84.5
Q ss_pred CCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccc------cceEEEeecccccccccHHHHH
Q 042739 188 DGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYF------QGNCFMANVREESNKLGVIRVR 261 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~ 261 (505)
++++||+.++.++.+.|.... ...+.|+|++|+|||+||..+++++.... ...+|..+. .
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~---------~--- 251 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI---------G--- 251 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH---------H---
Confidence 459999999999999997532 34556899999999999999998753321 122222111 0
Q ss_pred HHHHHHHhCCCCccCCCCc-hHHHHhcc-CCCeEEEEEeCCCC----------CHHHHHHHhcCcCCCCCCCEEEEEeCc
Q 042739 262 DEVISQVLGENLKVGTLTI-PQNIKKGL-QRMKVLIVLDDVHD----------EFTQLESLAGVIDRFSPGSRIIITTRD 329 (505)
Q Consensus 262 ~~ll~~~~~~~~~~~~~~~-~~~l~~~l-~~~~~LlVlDdv~~----------~~~~~~~l~~~l~~~~~~~~iliTsR~ 329 (505)
.++. +... ....+. ...+...+ ...+.+|+||+++. ..+....+.+.+. ....++|.+|..
T Consensus 252 -~lla---G~~~-~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~ 324 (758)
T PRK11034 252 -SLLA---GTKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTY 324 (758)
T ss_pred -HHhc---ccch-hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCCh
Confidence 1110 0000 001111 22222222 34578999999951 0111122333322 233455555543
Q ss_pred chhhc-------ccCCCcEEEcCCCCHhHHHHHHHHhh
Q 042739 330 KRVLD-------KCEVSNIFEVKGLEHNKAFELFCRKA 360 (505)
Q Consensus 330 ~~~~~-------~~~~~~~~~l~~L~~~ea~~L~~~~~ 360 (505)
..... .......+.+++++.++..+++....
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 32110 01233579999999999999998654
No 115
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.13 E-value=3.9e-05 Score=73.25 Aligned_cols=130 Identities=16% Similarity=0.204 Sum_probs=70.7
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccc--cceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccC
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYF--QGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQ 289 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~ 289 (505)
..+.++|++|+|||++|+.++..+.... ....|+. .+. .+++..+.+... .....+.+..
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~----v~~--------~~l~~~~~g~~~-----~~~~~~~~~a- 120 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS----VTR--------DDLVGQYIGHTA-----PKTKEILKRA- 120 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE----ecH--------HHHhHhhcccch-----HHHHHHHHHc-
Confidence 3688999999999999988887654321 1122332 111 112222222110 0111122222
Q ss_pred CCeEEEEEeCCCC----------CHHHHHHHhcCcCCCCCCCEEEEEeCcchhhc--cc------CCCcEEEcCCCCHhH
Q 042739 290 RMKVLIVLDDVHD----------EFTQLESLAGVIDRFSPGSRIIITTRDKRVLD--KC------EVSNIFEVKGLEHNK 351 (505)
Q Consensus 290 ~~~~LlVlDdv~~----------~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~--~~------~~~~~~~l~~L~~~e 351 (505)
.+-+|+||+++. ..+....+...+.....+.+||+++.....-. .. .....+++++++.+|
T Consensus 121 -~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 121 -MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred -cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 236899999931 12234455555544445666777664331111 01 123579999999999
Q ss_pred HHHHHHHhh
Q 042739 352 AFELFCRKA 360 (505)
Q Consensus 352 a~~L~~~~~ 360 (505)
..+++...+
T Consensus 200 l~~I~~~~l 208 (284)
T TIGR02880 200 LLVIAGLML 208 (284)
T ss_pred HHHHHHHHH
Confidence 999998776
No 116
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=0.00018 Score=69.52 Aligned_cols=175 Identities=8% Similarity=0.039 Sum_probs=98.0
Q ss_pred HHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCC-----
Q 042739 197 IEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGE----- 271 (505)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----- 271 (505)
-+.|.+.+..+ .-.+...++|+.|+||+++|..++..+--.-+... ..++ .-...+.+.....+.
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~--~~Cg-------~C~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 11 YQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD--QPCG-------QCHSCHLFQAGNHPDFHILE 80 (325)
T ss_pred HHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC--CCCC-------CCHHHHHHhcCCCCCEEEEc
Confidence 34455555422 22567889999999999999999987522110000 0000 000000000000000
Q ss_pred --CCccCCCCchHHHHhcc-----CCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-hhhcc-cCCCcE
Q 042739 272 --NLKVGTLTIPQNIKKGL-----QRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK-RVLDK-CEVSNI 341 (505)
Q Consensus 272 --~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~-~~~~~~ 341 (505)
....-..+.+..+.+.+ .++.-++|+|+++ .+......|+..+...+.+..+|++|.+. .+++. ......
T Consensus 81 p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 81 PIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred cccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 00000011122222222 2445688899996 46667778888887767777777777665 33333 234568
Q ss_pred EEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHH
Q 042739 342 FEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLAL 388 (505)
Q Consensus 342 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (505)
+.+.+++.+++.+.+..... .. ...+..++..++|.|+..
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~----~~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSS----AE---ISEILTALRINYGRPLLA 200 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhc----cC---hHHHHHHHHHcCCCHHHH
Confidence 99999999999999977641 11 123566788899999633
No 117
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.11 E-value=4e-05 Score=78.18 Aligned_cols=176 Identities=13% Similarity=0.116 Sum_probs=90.9
Q ss_pred CCCceechhhHHHHHHhh---hc-----cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHH
Q 042739 187 LDGFIGINSRIEEIKSLL---CL-----ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVI 258 (505)
Q Consensus 187 ~~~fvGR~~el~~l~~~L---~~-----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 258 (505)
...+.|.+...+.+.... .. +-..++-+.++|++|+|||.+|+.++..+...| +..+...
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~-------- 294 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGK-------- 294 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHH--------
Confidence 345678776665555422 10 112356789999999999999999999864332 1111110
Q ss_pred HHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCCH--------------HHHHHHhcCcCCCCCCCEEE
Q 042739 259 RVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDEF--------------TQLESLAGVIDRFSPGSRII 324 (505)
Q Consensus 259 ~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------------~~~~~l~~~l~~~~~~~~il 324 (505)
+.....+. ........+...-...+++|+||+++ .. ..+..+...+.....+..||
T Consensus 295 -----l~~~~vGe----se~~l~~~f~~A~~~~P~IL~IDEID-~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 295 -----LFGGIVGE----SESRMRQMIRIAEALSPCILWIDEID-KAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred -----hcccccCh----HHHHHHHHHHHHHhcCCcEEEehhhh-hhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 00000000 00000111221223468999999993 11 01122222222223445566
Q ss_pred EEeCcchhhc-----ccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCh
Q 042739 325 ITTRDKRVLD-----KCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNP 385 (505)
Q Consensus 325 iTsR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (505)
.||.+...+. .......+.++..+.++-.++|..+........ ........+++.+.|+-
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~-~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKS-WKKYDIKKLSKLSNKFS 429 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCc-ccccCHHHHHhhcCCCC
Confidence 6765543211 123456788999999999999987773322110 01122456666666653
No 118
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=0.00016 Score=70.50 Aligned_cols=175 Identities=11% Similarity=0.058 Sum_probs=97.6
Q ss_pred HHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHh-------
Q 042739 197 IEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVL------- 269 (505)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~------- 269 (505)
-+.|.+.+..+ .-.+...++|+.|+||+++|..++..+--.-+..- ..++.. ...+.+.....
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~--~~Cg~C-------~sC~~~~~g~HPD~~~i~ 80 (334)
T PRK07993 11 YEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGH--KSCGHC-------RGCQLMQAGTHPDYYTLT 80 (334)
T ss_pred HHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCC--CCCCCC-------HHHHHHHcCCCCCEEEEe
Confidence 34555555422 23678889999999999999999987521100000 000000 00000000000
Q ss_pred CCCC-ccCCCCchHHHHhcc-----CCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-hhhcc-cCCCc
Q 042739 270 GENL-KVGTLTIPQNIKKGL-----QRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK-RVLDK-CEVSN 340 (505)
Q Consensus 270 ~~~~-~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~-~~~~~ 340 (505)
+... ..-..+.+..+.+.+ .++.-++|||+++ .+......|+..+...+.+..+|++|.+. .+++. .....
T Consensus 81 p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 81 PEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR 160 (334)
T ss_pred cccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc
Confidence 0000 000011122222222 2456689999996 56667778888887766777777777654 34433 23445
Q ss_pred EEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHH
Q 042739 341 IFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLAL 388 (505)
Q Consensus 341 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (505)
.+.+.+++.+++.+.+.... ..+ .+.+..++..++|.|...
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~----~~~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSREV----TMS---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred cccCCCCCHHHHHHHHHHcc----CCC---HHHHHHHHHHcCCCHHHH
Confidence 78999999999998886542 111 233667889999999643
No 119
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.08 E-value=6.6e-05 Score=74.85 Aligned_cols=175 Identities=19% Similarity=0.236 Sum_probs=96.7
Q ss_pred CCCCCceechhhHHHHHHhhhc-----------cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCL-----------ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESN 253 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 253 (505)
.....+.|.+...++|.+.+.. +-..++-+.|+|++|+|||+||+.+++.....|- .+. .
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~-~----- 212 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV-G----- 212 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-h-----
Confidence 3345688999888888876631 1123677999999999999999999987654321 111 0
Q ss_pred cccHHHHHHHHHHHHhCCCCccCCCCc-hHHHHhccCCCeEEEEEeCCCCCH-------------H---HHHHHhcCcCC
Q 042739 254 KLGVIRVRDEVISQVLGENLKVGTLTI-PQNIKKGLQRMKVLIVLDDVHDEF-------------T---QLESLAGVIDR 316 (505)
Q Consensus 254 ~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~~l~~~l~~~~~LlVlDdv~~~~-------------~---~~~~l~~~l~~ 316 (505)
. .+.....+.. ... ...+.......+.+|+||+++ .. . .+..++..+..
T Consensus 213 ----s----~l~~k~~ge~-----~~~lr~lf~~A~~~~P~ILfIDEID-~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~ 278 (398)
T PTZ00454 213 ----S----EFVQKYLGEG-----PRMVRDVFRLARENAPSIIFIDEVD-SIATKRFDAQTGADREVQRILLELLNQMDG 278 (398)
T ss_pred ----H----HHHHHhcchh-----HHHHHHHHHHHHhcCCeEEEEECHh-hhccccccccCCccHHHHHHHHHHHHHhhc
Confidence 0 0111111100 001 112222234578999999983 21 1 12223332221
Q ss_pred C--CCCCEEEEEeCcchhhcc-----cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCh
Q 042739 317 F--SPGSRIIITTRDKRVLDK-----CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNP 385 (505)
Q Consensus 317 ~--~~~~~iliTsR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (505)
. ..+..||+||.....+.. ......++++..+.++-.++|........... .-....++..+.|+-
T Consensus 279 ~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~---dvd~~~la~~t~g~s 351 (398)
T PTZ00454 279 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE---EVDLEDFVSRPEKIS 351 (398)
T ss_pred cCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc---ccCHHHHHHHcCCCC
Confidence 1 235667777765533211 12345789999999998888876653222111 112446666776664
No 120
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.06 E-value=0.00047 Score=62.78 Aligned_cols=55 Identities=24% Similarity=0.379 Sum_probs=43.1
Q ss_pred CCCCCceechhhHHHHHHhhhc--cCCCceEEEEeccCcchHHHHHHHHHhhhcccc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCL--ESHDARIVGIWGMGGIGKTTIASVVFHQISRYF 239 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (505)
...+.++|-+.+.+.|.+.... ......-+.++|..|.|||+|++.+...+....
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 5667899999999998775432 223456788999999999999999999876643
No 121
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.05 E-value=3.3e-05 Score=64.60 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.3
Q ss_pred EEEeccCcchHHHHHHHHHhhhc
Q 042739 214 VGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999975
No 122
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.03 E-value=0.00065 Score=68.08 Aligned_cols=236 Identities=16% Similarity=0.121 Sum_probs=125.9
Q ss_pred hhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCc
Q 042739 195 SRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLK 274 (505)
Q Consensus 195 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 274 (505)
.-+.++.+.+.. ...++.|.|+-++|||||++.+.....+. .+++...........+.+.......
T Consensus 24 ~~~~~l~~~~~~---~~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~~~~-------- 89 (398)
T COG1373 24 KLLPRLIKKLDL---RPFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRAYIE-------- 89 (398)
T ss_pred hhhHHHHhhccc---CCcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHHHHH--------
Confidence 444455555432 22299999999999999997777766554 4555422222222222111111111
Q ss_pred cCCCCchHHHHhccCCCeEEEEEeCCCCCHHHHHHHhcCcCCCCCCCEEEEEeCcchhhcc------cCCCcEEEcCCCC
Q 042739 275 VGTLTIPQNIKKGLQRMKVLIVLDDVHDEFTQLESLAGVIDRFSPGSRIIITTRDKRVLDK------CEVSNIFEVKGLE 348 (505)
Q Consensus 275 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~------~~~~~~~~l~~L~ 348 (505)
.-..++.+|+||.|+ ....|...+..+...+.. ++++|+.+...... .+....+++-||+
T Consensus 90 ------------~~~~~~~yifLDEIq-~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 90 ------------LKEREKSYIFLDEIQ-NVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred ------------hhccCCceEEEeccc-CchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 111167899999994 445555555555443444 78888877644322 1335579999999
Q ss_pred HhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhcCCCHHHHHHHHHhhccCCCccHHHHHHHhH-h
Q 042739 349 HNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSLYQNSIQQWEDKLHNLNLISEPNIYKVLKISY-D 427 (505)
Q Consensus 349 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~~~l~~l~~~~~~~l~~~l~~s~-~ 427 (505)
..|-..+..... ... .. ...-+-.-.+||.|.++..-...-. ........+. .++.+..- .
T Consensus 156 F~Efl~~~~~~~----~~~-~~-~~~f~~Yl~~GGfP~~v~~~~~~~~--~~~~~~~~~~----------~Di~~~~~~~ 217 (398)
T COG1373 156 FREFLKLKGEEI----EPS-KL-ELLFEKYLETGGFPESVKADLSEKK--LKEYLDTILK----------RDIIERGKIE 217 (398)
T ss_pred HHHHHhhccccc----chh-HH-HHHHHHHHHhCCCcHHHhCcchhhH--HHHHHHHHHH----------HHHHHHcCcc
Confidence 988766542101 000 11 1123334557999998854322111 0000000000 11111110 0
Q ss_pred cCChhHHHHHhhh-hccCCCCCHHHHHHHHh-C-CCchhhHHHHHhhccceEE
Q 042739 428 ELNSEEKGIFLDI-ACFFKGEDVDLLTRIQD-N-PTSMCHRLKILVGKSLIAI 477 (505)
Q Consensus 428 ~L~~~~~~~l~~l-a~f~~~~~~~~l~~l~~-~-~~~~~~~l~~L~~~sLl~~ 477 (505)
.. ...+.++..+ +-.+..++...+...+. . .......++.|.+.-++..
T Consensus 218 ~~-~~~k~i~~~l~~~~g~~~s~~~la~~l~~is~~Ti~~Yl~~le~~fll~~ 269 (398)
T COG1373 218 NA-DLMKRILRFLASNIGSPISYSSLARELKGISKDTIRKYLSYLEDAFLLFL 269 (398)
T ss_pred cH-HHHHHHHHHHHhhcCCccCHHHHHHHHhccchHHHHHHHHHHHHhhheEE
Confidence 11 3445555544 44456689999999884 4 4556677888888777763
No 123
>CHL00176 ftsH cell division protein; Validated
Probab=98.01 E-value=7.1e-05 Score=78.94 Aligned_cols=182 Identities=18% Similarity=0.232 Sum_probs=98.7
Q ss_pred CCCCceechhhHHHHHHhhh---cc-------CCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccc
Q 042739 186 DLDGFIGINSRIEEIKSLLC---LE-------SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKL 255 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~---~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 255 (505)
....++|.+...+++.+.+. .. ....+-+.++|++|+|||+||+.++...... |+. .+. .
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~----is~-s 250 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS----ISG-S 250 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eee----ccH-H
Confidence 33557888877666665542 11 1124568999999999999999999875322 121 000 0
Q ss_pred cHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCCH----------------HHHHHHhcCcCCC--
Q 042739 256 GVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDEF----------------TQLESLAGVIDRF-- 317 (505)
Q Consensus 256 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~~l~~~l~~~-- 317 (505)
.+.. ...+. ........+.......+++|+||++ +.. ..+..++..+...
T Consensus 251 ~f~~-------~~~g~----~~~~vr~lF~~A~~~~P~ILfIDEI-D~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 251 EFVE-------MFVGV----GAARVRDLFKKAKENSPCIVFIDEI-DAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred HHHH-------Hhhhh----hHHHHHHHHHHHhcCCCcEEEEecc-hhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 0000 00000 0000122333444567899999999 322 1233333333221
Q ss_pred CCCCEEEEEeCcchhhc-----ccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcC-ChHHHHHH
Q 042739 318 SPGSRIIITTRDKRVLD-----KCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADG-NPLALEVL 391 (505)
Q Consensus 318 ~~~~~iliTsR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~ 391 (505)
..+..||.||.....+. .......+.++..+.++-.+++..++..... ........+++.+.| .+--|..+
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G~sgaDL~~l 395 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL---SPDVSLELIARRTPGFSGADLANL 395 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCCCCHHHHHHH
Confidence 23455666665432211 1123467899999999999999887733211 123345677888887 44444443
Q ss_pred H
Q 042739 392 G 392 (505)
Q Consensus 392 ~ 392 (505)
.
T Consensus 396 v 396 (638)
T CHL00176 396 L 396 (638)
T ss_pred H
Confidence 3
No 124
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=0.00018 Score=70.37 Aligned_cols=160 Identities=11% Similarity=0.078 Sum_probs=88.3
Q ss_pred cee-chhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHH
Q 042739 190 FIG-INSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQV 268 (505)
Q Consensus 190 fvG-R~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 268 (505)
++| -+...+.|...+..+ .-.+...++|+.|+|||++|..+++.+-..-+...- .++ .-.....+....
T Consensus 7 i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~--~cg-------~C~~c~~~~~~~ 76 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE--PCG-------TCTNCKRIDSGN 76 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC--CCC-------cCHHHHHHhcCC
Confidence 455 566677777777532 236677999999999999999999875321100000 000 000000000000
Q ss_pred hCCC------CccCCCCchHHHHhc-----cCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcch-hhcc
Q 042739 269 LGEN------LKVGTLTIPQNIKKG-----LQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDKR-VLDK 335 (505)
Q Consensus 269 ~~~~------~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~~-~~~~ 335 (505)
.+.. ...-..+.+..+.+. ..+.+-++|+|+++ .+......|+..+...+.++.+|++|.+.. +.+.
T Consensus 77 hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~T 156 (329)
T PRK08058 77 HPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPT 156 (329)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHH
Confidence 0000 000000111112211 22445689999995 355567778887776677777777776542 2222
Q ss_pred -cCCCcEEEcCCCCHhHHHHHHHHh
Q 042739 336 -CEVSNIFEVKGLEHNKAFELFCRK 359 (505)
Q Consensus 336 -~~~~~~~~l~~L~~~ea~~L~~~~ 359 (505)
......+++.+++.++..+.+...
T Consensus 157 IrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 157 ILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHhhceeeeCCCCCHHHHHHHHHHc
Confidence 234567999999999998888653
No 125
>CHL00181 cbbX CbbX; Provisional
Probab=97.98 E-value=0.00034 Score=66.83 Aligned_cols=131 Identities=15% Similarity=0.228 Sum_probs=71.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhccc-c-cceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhcc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRY-F-QGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGL 288 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l 288 (505)
...+.++|++|+|||++|+.++..+... + ....|+. .+. ..+.....+... ......+.. .
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v~~--------~~l~~~~~g~~~----~~~~~~l~~-a 121 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----VTR--------DDLVGQYIGHTA----PKTKEVLKK-A 121 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----ecH--------HHHHHHHhccch----HHHHHHHHH-c
Confidence 3458899999999999999998865321 1 1111222 110 112222221110 000112222 2
Q ss_pred CCCeEEEEEeCCCC----------CHHHHHHHhcCcCCCCCCCEEEEEeCcchhhc--------ccCCCcEEEcCCCCHh
Q 042739 289 QRMKVLIVLDDVHD----------EFTQLESLAGVIDRFSPGSRIIITTRDKRVLD--------KCEVSNIFEVKGLEHN 350 (505)
Q Consensus 289 ~~~~~LlVlDdv~~----------~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~--------~~~~~~~~~l~~L~~~ 350 (505)
..-+|+||+++. ..+....+...+........||+++....... .-.....+.+++++.+
T Consensus 122 --~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~ 199 (287)
T CHL00181 122 --MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPE 199 (287)
T ss_pred --cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHH
Confidence 234999999941 12344455555544445566777765332211 0012457999999999
Q ss_pred HHHHHHHHhh
Q 042739 351 KAFELFCRKA 360 (505)
Q Consensus 351 ea~~L~~~~~ 360 (505)
|..+++...+
T Consensus 200 el~~I~~~~l 209 (287)
T CHL00181 200 ELLQIAKIML 209 (287)
T ss_pred HHHHHHHHHH
Confidence 9999998777
No 126
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.96 E-value=3.4e-05 Score=77.52 Aligned_cols=172 Identities=18% Similarity=0.249 Sum_probs=95.0
Q ss_pred CCceechhhHHHHHHhhhcc-----------CCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeeccccccccc
Q 042739 188 DGFIGINSRIEEIKSLLCLE-----------SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLG 256 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 256 (505)
..+.|.+.++++|.+.+... -...+-+.|+|++|+|||+||+.++......|- .+. . +.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~-~---se--- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVV-G---SE--- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEe-c---ch---
Confidence 45689999999998877421 123567889999999999999999998755431 111 0 00
Q ss_pred HHHHHHHHHHHHhCCCCccCCCCc-hHHHHhccCCCeEEEEEeCCCCCH-------------H---HHHHHhcCcCCC--
Q 042739 257 VIRVRDEVISQVLGENLKVGTLTI-PQNIKKGLQRMKVLIVLDDVHDEF-------------T---QLESLAGVIDRF-- 317 (505)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~~~~~-~~~l~~~l~~~~~LlVlDdv~~~~-------------~---~~~~l~~~l~~~-- 317 (505)
+ .....+. .... ...+.....+.+++|+||+++ .. + .+..++..+...
T Consensus 253 L-------~~k~~Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID-~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 253 L-------IQKYLGD-----GPKLVRELFRVAEENAPSIVFIDEID-AIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred h-------hhhhcch-----HHHHHHHHHHHHHhCCCcEEeHHHHH-HHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 0 0000000 0000 111222223568899999982 11 1 112222222211
Q ss_pred CCCCEEEEEeCcchhhcc-----cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCh
Q 042739 318 SPGSRIIITTRDKRVLDK-----CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNP 385 (505)
Q Consensus 318 ~~~~~iliTsR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (505)
..+..||+||.....+.. ......++++..+.++..++|..+......... -....++..+.|+-
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d---vdl~~la~~t~g~s 389 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED---VDLEEFIMAKDELS 389 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC---cCHHHHHHhcCCCC
Confidence 235677777765433221 123457899999999999999877632221111 12345666666554
No 127
>PRK08181 transposase; Validated
Probab=97.93 E-value=5.1e-05 Score=71.33 Aligned_cols=100 Identities=16% Similarity=0.122 Sum_probs=53.8
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCC
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRM 291 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~ 291 (505)
..+.|+|++|+|||.||..+++........+.|+. ...++..+..... . .....+.+.+. +
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~----------~~~L~~~l~~a~~-------~-~~~~~~l~~l~-~ 167 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR----------TTDLVQKLQVARR-------E-LQLESAIAKLD-K 167 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee----------HHHHHHHHHHHHh-------C-CcHHHHHHHHh-c
Confidence 45899999999999999999988655443444443 1223333322110 0 11222222222 2
Q ss_pred eEEEEEeCCC---CCHHHHHHHhcCcCCCCCCCEEEEEeCcc
Q 042739 292 KVLIVLDDVH---DEFTQLESLAGVIDRFSPGSRIIITTRDK 330 (505)
Q Consensus 292 ~~LlVlDdv~---~~~~~~~~l~~~l~~~~~~~~iliTsR~~ 330 (505)
.-||||||+. .+......+...+...-.+..+||||...
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 3499999994 12222233333332211234688888754
No 128
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.0012 Score=63.69 Aligned_cols=91 Identities=13% Similarity=0.189 Sum_probs=64.1
Q ss_pred CeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-hhhccc-CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCC
Q 042739 291 MKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK-RVLDKC-EVSNIFEVKGLEHNKAFELFCRKAFGQNNRS 367 (505)
Q Consensus 291 ~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 367 (505)
..-++|||+++ .+......|+..+...+.++.+|++|.+. .+++.+ .....+.+.+++.+++.+.+.... . .
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~-~ 182 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I-T 182 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-c
Confidence 45589999996 45667778888887767777777766654 333332 345679999999999999886542 1 1
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHH
Q 042739 368 HDLYQLSQRVVCYADGNPLALEVL 391 (505)
Q Consensus 368 ~~~~~~~~~i~~~~~G~PLal~~~ 391 (505)
....++..++|.|+....+
T Consensus 183 -----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 183 -----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -----hHHHHHHHcCCCHHHHHHH
Confidence 1346788999999876554
No 129
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.92 E-value=0.0002 Score=74.27 Aligned_cols=183 Identities=19% Similarity=0.180 Sum_probs=96.8
Q ss_pred CCCCCceechhhHHHHHHhhh---c-------cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeeccccccc
Q 042739 185 TDLDGFIGINSRIEEIKSLLC---L-------ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNK 254 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~---~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 254 (505)
...+.++|-+...+++.+.+. . +....+-+.++|++|+|||+||+.++......| +. .+.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~----i~~- 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS----ISG- 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee----ccH-
Confidence 344567888877766665443 1 112245688999999999999999998753322 11 010
Q ss_pred ccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCCH----------------HHHHHHhcCcCCC-
Q 042739 255 LGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDEF----------------TQLESLAGVIDRF- 317 (505)
Q Consensus 255 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~~l~~~l~~~- 317 (505)
..+ .....+. ........+.......+.+|+||+++ .. ..+..++..+...
T Consensus 122 ---~~~----~~~~~g~----~~~~l~~~f~~a~~~~p~Il~iDEid-~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 122 ---SDF----VEMFVGV----GASRVRDLFEQAKKNAPCIIFIDEID-AVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 189 (495)
T ss_pred ---HHH----HHHHhcc----cHHHHHHHHHHHHhcCCCEEEEechh-hhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence 000 0110000 00000122223334567899999993 21 1122233333211
Q ss_pred -CCCCEEEEEeCcchh-----hcccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCC-hHHHHH
Q 042739 318 -SPGSRIIITTRDKRV-----LDKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGN-PLALEV 390 (505)
Q Consensus 318 -~~~~~iliTsR~~~~-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~ 390 (505)
..+..||.||..... .........+.++..+.++-.+++..+........ ......+++.+.|. +--|..
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sgadl~~ 266 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGADLAN 266 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHHHHHH
Confidence 224445555644321 11112456789999999999999987763322211 12345788888874 444544
Q ss_pred HH
Q 042739 391 LG 392 (505)
Q Consensus 391 ~~ 392 (505)
+.
T Consensus 267 l~ 268 (495)
T TIGR01241 267 LL 268 (495)
T ss_pred HH
Confidence 43
No 130
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.0011 Score=64.50 Aligned_cols=92 Identities=16% Similarity=0.225 Sum_probs=62.3
Q ss_pred CCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCc-chhhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCC
Q 042739 290 RMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRD-KRVLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNR 366 (505)
Q Consensus 290 ~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 366 (505)
++.-++|||+++ .+......|+..+...++++.+|++|.+ ..+++. ......+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 345588899996 5667778888888776777766666655 444433 2345689999999999999987642 1
Q ss_pred ChhHHHHHHHHHHHhcCChHHHHHH
Q 042739 367 SHDLYQLSQRVVCYADGNPLALEVL 391 (505)
Q Consensus 367 ~~~~~~~~~~i~~~~~G~PLal~~~ 391 (505)
.. ...++..++|.|+....+
T Consensus 206 ~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 223577889999754433
No 131
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.89 E-value=0.0003 Score=66.47 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=21.6
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
+.+.|.|++|+|||+||+.++....
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 4677999999999999999998653
No 132
>PRK08116 hypothetical protein; Validated
Probab=97.88 E-value=0.0001 Score=69.66 Aligned_cols=103 Identities=22% Similarity=0.277 Sum_probs=56.2
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCC
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRM 291 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~ 291 (505)
..+.|+|.+|+|||.||..+++.+..+....+++. ...++..+....... .......+.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~-----~~~~~~~~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSS-----GKEDENEIIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhcc-----ccccHHHHHHHhcCC
Confidence 45889999999999999999998765533344443 222333332222111 111122344444544
Q ss_pred eEEEEEeCCC---CCHHHHHHHhcCcCC-CCCCCEEEEEeCcc
Q 042739 292 KVLIVLDDVH---DEFTQLESLAGVIDR-FSPGSRIIITTRDK 330 (505)
Q Consensus 292 ~~LlVlDdv~---~~~~~~~~l~~~l~~-~~~~~~iliTsR~~ 330 (505)
. ||||||+. .+......+...+.. ...+..+|+||...
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 4 89999993 111222233332221 13456788888643
No 133
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.88 E-value=0.0006 Score=65.22 Aligned_cols=199 Identities=17% Similarity=0.170 Sum_probs=111.2
Q ss_pred CCCceechhhHHHHHHhhhccCCC-ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHH
Q 042739 187 LDGFIGINSRIEEIKSLLCLESHD-ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVI 265 (505)
Q Consensus 187 ~~~fvGR~~el~~l~~~L~~~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll 265 (505)
.+.|.+|+.++..|..++...+.. +..|.|+|..|.|||.+.+++.+... -..+|+.. -+......++..++
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n~----~ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLNC----VECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---Ccceeeeh----HHhccHHHHHHHHH
Confidence 356889999999999999754443 45669999999999999999998862 24678773 34455666777777
Q ss_pred HHHh-CCCCcc-CCC--Cc----hHHHHh--ccC--CCeEEEEEeCCCCCHHH-----HHHHhcCcCCCCCCCEEEEEeC
Q 042739 266 SQVL-GENLKV-GTL--TI----PQNIKK--GLQ--RMKVLIVLDDVHDEFTQ-----LESLAGVIDRFSPGSRIIITTR 328 (505)
Q Consensus 266 ~~~~-~~~~~~-~~~--~~----~~~l~~--~l~--~~~~LlVlDdv~~~~~~-----~~~l~~~l~~~~~~~~iliTsR 328 (505)
.+.. ...++. ... +. ...+.+ ... ++.++|||||++ .... +..+.....-.......|+++-
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad-~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNAD-ALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHH-hhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 7764 222211 111 00 222222 122 468999999993 3222 2222211111122233444443
Q ss_pred cc---hhhcccCC--CcEEEcCCCCHhHHHHHHHHhhcCCCC---CChhHHHHHHHHHHHhcCChHHHHHHHHh
Q 042739 329 DK---RVLDKCEV--SNIFEVKGLEHNKAFELFCRKAFGQNN---RSHDLYQLSQRVVCYADGNPLALEVLGSS 394 (505)
Q Consensus 329 ~~---~~~~~~~~--~~~~~l~~L~~~ea~~L~~~~~~~~~~---~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 394 (505)
.. .....++. .-++..+..+.+|..+++.+.-.+... ...-..-+..-....|+ -+-.+..++..
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~ 229 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISL 229 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHH
Confidence 22 11221222 235678899999999998655421111 01111223444556676 55556555543
No 134
>PRK10536 hypothetical protein; Provisional
Probab=97.87 E-value=0.00013 Score=67.09 Aligned_cols=138 Identities=12% Similarity=0.116 Sum_probs=75.3
Q ss_pred CCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhh-h-cccccceEEEeecccccc-----cccHH
Q 042739 186 DLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQ-I-SRYFQGNCFMANVREESN-----KLGVI 258 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~-~-~~~f~~~~~~~~~~~~~~-----~~~~~ 258 (505)
+...+.+|......+..++.. ...+.++|++|.|||+||..++.+ + ...|...+.....-.... +.+..
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHH
Confidence 345577899999999988853 349999999999999999999875 3 344543333321111111 11111
Q ss_pred H-------HHHHHHHHHhCCCC-c-c---CCCCchHHHHhccCCC---eEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCE
Q 042739 259 R-------VRDEVISQVLGENL-K-V---GTLTIPQNIKKGLQRM---KVLIVLDDVH-DEFTQLESLAGVIDRFSPGSR 322 (505)
Q Consensus 259 ~-------~~~~ll~~~~~~~~-~-~---~~~~~~~~l~~~l~~~---~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~ 322 (505)
+ -+.+.+..+.+... . . ......-.-..+++++ .-+||+|.++ -+..+...++.. .+.+++
T Consensus 129 eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk 205 (262)
T PRK10536 129 EKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVT 205 (262)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCE
Confidence 1 11222222222110 0 0 0000000011234444 3599999996 344555555543 478999
Q ss_pred EEEEeCcc
Q 042739 323 IIITTRDK 330 (505)
Q Consensus 323 iliTsR~~ 330 (505)
+|+|.-..
T Consensus 206 ~v~~GD~~ 213 (262)
T PRK10536 206 VIVNGDIT 213 (262)
T ss_pred EEEeCChh
Confidence 99987643
No 135
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.86 E-value=2.6e-05 Score=72.47 Aligned_cols=90 Identities=17% Similarity=0.136 Sum_probs=55.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcc-cccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCc-------h
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISR-YFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTI-------P 281 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~-------~ 281 (505)
....++|.|++|+|||||++.+++.+.. +|+..+|+....+ ...++.++++.+...+.-.....+.... .
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 3568889999999999999999998654 5777778774432 1246667776663332222111111110 1
Q ss_pred HHHHh-ccCCCeEEEEEeCCC
Q 042739 282 QNIKK-GLQRMKVLIVLDDVH 301 (505)
Q Consensus 282 ~~l~~-~l~~~~~LlVlDdv~ 301 (505)
+.... .-.++++++++|++.
T Consensus 93 ~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHH
Confidence 11111 134789999999994
No 136
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.85 E-value=0.00042 Score=70.40 Aligned_cols=189 Identities=14% Similarity=0.113 Sum_probs=113.9
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccc-cceEEEeecccccccccHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYF-QGNCFMANVREESNKLGVIRVRDE 263 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~ 263 (505)
.....++|-+.....|...+..+. -......+|+-|+||||+|+-++..+--.- .. ..+-+-....+.
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~----------~ePC~~C~~Ck~ 81 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPT----------AEPCGKCISCKE 81 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCC----------CCcchhhhhhHh
Confidence 445668999999999999997432 255677899999999999999998642110 00 000000011111
Q ss_pred HHHHHhCCC---C--ccCCCCchHHHHhccC-----CCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcchh
Q 042739 264 VISQVLGEN---L--KVGTLTIPQNIKKGLQ-----RMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDKRV 332 (505)
Q Consensus 264 ll~~~~~~~---~--~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~ 332 (505)
+-..-...- + .....+....+++... ++.=+.|||.|| -+...+..|+..+...+.+..+|+.|.+..-
T Consensus 82 I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~K 161 (515)
T COG2812 82 INEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQK 161 (515)
T ss_pred hhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCc
Confidence 111000000 0 0011111333333322 345589999997 4667788888888776778777777766532
Q ss_pred h--cccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChH
Q 042739 333 L--DKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPL 386 (505)
Q Consensus 333 ~--~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 386 (505)
. .-......+.+..++.++....+...+... .-...++....|++..+|-..
T Consensus 162 ip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E--~I~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 162 IPNTILSRCQRFDFKRLDLEEIAKHLAAILDKE--GINIEEDALSLIARAAEGSLR 215 (515)
T ss_pred CchhhhhccccccccCCCHHHHHHHHHHHHHhc--CCccCHHHHHHHHHHcCCChh
Confidence 2 223445679999999999999998877322 223345566677777777443
No 137
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.83 E-value=0.00012 Score=79.83 Aligned_cols=174 Identities=16% Similarity=0.172 Sum_probs=93.5
Q ss_pred CCCCceechhhHHHHHHhhhcc-----------CCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeeccccc-c
Q 042739 186 DLDGFIGINSRIEEIKSLLCLE-----------SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREES-N 253 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~ 253 (505)
..+.+.|.+..++.|.+.+... -...+.+.|+|++|+|||+||+.+++.....| +.+. ..... .
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~ 251 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSK 251 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhcc
Confidence 3345889999999998876421 12346788999999999999999998764432 1111 10000 0
Q ss_pred ccc-HHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCC-------------HHHHHHHhcCcCCCC-
Q 042739 254 KLG-VIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDE-------------FTQLESLAGVIDRFS- 318 (505)
Q Consensus 254 ~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~~l~~~l~~~~- 318 (505)
..+ ....+ ...+.......+.+|+||+++ . ......+...+....
T Consensus 252 ~~g~~~~~l-------------------~~lf~~a~~~~p~il~iDEid-~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~ 311 (733)
T TIGR01243 252 YYGESEERL-------------------REIFKEAEENAPSIIFIDEID-AIAPKREEVTGEVEKRVVAQLLTLMDGLKG 311 (733)
T ss_pred cccHHHHHH-------------------HHHHHHHHhcCCcEEEeehhh-hhcccccCCcchHHHHHHHHHHHHhhcccc
Confidence 000 00001 112222234567899999983 2 112333443333222
Q ss_pred CCCEEEE-EeCcchhh-ccc----CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChH
Q 042739 319 PGSRIII-TTRDKRVL-DKC----EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPL 386 (505)
Q Consensus 319 ~~~~ili-TsR~~~~~-~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 386 (505)
.+..++| ||...... ..+ .....+.++..+.++-.+++.......... .......+++.+.|.--
T Consensus 312 ~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~---~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 312 RGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA---EDVDLDKLAEVTHGFVG 382 (733)
T ss_pred CCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc---cccCHHHHHHhCCCCCH
Confidence 2333444 44332211 111 123568888889998888887655221111 11235667778888743
No 138
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.83 E-value=0.00039 Score=72.99 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=42.8
Q ss_pred CCCCCceechhhHHHHHHhhhccC---CCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLES---HDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...+.++|-+..++++..++.... ...++++|+|++|+||||+++.++..+.
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 555679999999999999987422 2356899999999999999999998654
No 139
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00045 Score=65.59 Aligned_cols=172 Identities=20% Similarity=0.275 Sum_probs=95.2
Q ss_pred ceechhhHHHHHHhhhcc-----------CCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHH
Q 042739 190 FIGINSRIEEIKSLLCLE-----------SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVI 258 (505)
Q Consensus 190 fvGR~~el~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 258 (505)
.=|-+.++++|.+..... -..++=|.++||+|.|||-||+.++++....| +...+
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----Irvvg--------- 218 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVG--------- 218 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEecc---------
Confidence 446777777777765421 13467788999999999999999999865443 32111
Q ss_pred HHHHHHHHHHhCCCCccCCCCchHHHHhccC-CCeEEEEEeCCCCC-------------HHH---HHHHhcCcCCCC--C
Q 042739 259 RVRDEVISQVLGENLKVGTLTIPQNIKKGLQ-RMKVLIVLDDVHDE-------------FTQ---LESLAGVIDRFS--P 319 (505)
Q Consensus 259 ~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~-------------~~~---~~~l~~~l~~~~--~ 319 (505)
.++.....++.. .....+.+..+ ..+++|++|.+ |. .+. +-.|+..+..+. .
T Consensus 219 ---SElVqKYiGEGa-----RlVRelF~lArekaPsIIFiDEI-DAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 219 ---SELVQKYIGEGA-----RLVRELFELAREKAPSIIFIDEI-DAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred ---HHHHHHHhccch-----HHHHHHHHHHhhcCCeEEEEech-hhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 122222222210 11233333333 56999999999 32 111 223444444343 3
Q ss_pred CCEEEEEeCcchhh-----cccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHH
Q 042739 320 GSRIIITTRDKRVL-----DKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLA 387 (505)
Q Consensus 320 ~~~iliTsR~~~~~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 387 (505)
..+||..|-..+.+ ........++++.-+.+.-.++|.-+...-.... + --.+.+++.|.|.--|
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~-d--vd~e~la~~~~g~sGA 359 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLAD-D--VDLELLARLTEGFSGA 359 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCcc-C--cCHHHHHHhcCCCchH
Confidence 56888877554332 2223456788885555555566655553222111 1 1145667777776543
No 140
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.81 E-value=0.0001 Score=62.14 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=24.8
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYF 239 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (505)
+.+.|+|++|+||||++..++..+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 5789999999999999999999876654
No 141
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00067 Score=71.84 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=86.2
Q ss_pred CCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc-cc-----ceEEEeecccccccccHHH
Q 042739 186 DLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY-FQ-----GNCFMANVREESNKLGVIR 259 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~-----~~~~~~~~~~~~~~~~~~~ 259 (505)
.-++.+||+.|+.++.+.|.....+.+ .++|.+|+|||+++.-++.++... .+ ..++-.++...-
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~Lv------- 238 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLV------- 238 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHh-------
Confidence 345699999999999999985444333 367999999999999999986432 22 122222111110
Q ss_pred HHHHHHHHHhCCCCccCCCCchHHHHhcc-CCCeEEEEEeCCCC------C----HHHHHHHhcCcCCCCCCCEEE-EEe
Q 042739 260 VRDEVISQVLGENLKVGTLTIPQNIKKGL-QRMKVLIVLDDVHD------E----FTQLESLAGVIDRFSPGSRII-ITT 327 (505)
Q Consensus 260 ~~~~ll~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~------~----~~~~~~l~~~l~~~~~~~~il-iTs 327 (505)
.+......-.+....+.+.+ ...+++|++|.+|. . .+....+.+.+.. ...++| .||
T Consensus 239 ---------AGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR--GeL~~IGATT 307 (786)
T COG0542 239 ---------AGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--GELRCIGATT 307 (786)
T ss_pred ---------ccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc--CCeEEEEecc
Confidence 11111000111122232323 34489999999961 1 2333334444321 223444 455
Q ss_pred Ccchh------hcccCCCcEEEcCCCCHhHHHHHHHHhh
Q 042739 328 RDKRV------LDKCEVSNIFEVKGLEHNKAFELFCRKA 360 (505)
Q Consensus 328 R~~~~------~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 360 (505)
-++.- .........+.+...+.+++.++++...
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 43311 0111245678899999999998887543
No 142
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.80 E-value=3.1e-05 Score=75.34 Aligned_cols=90 Identities=16% Similarity=0.116 Sum_probs=55.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcc-cccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCc-------h
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISR-YFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTI-------P 281 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~-------~ 281 (505)
..+..+|+|++|+|||||++++++.+.. +|+..+|+..+++- +..+.++.+.++..+............ .
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 3567889999999999999999998654 58888898865442 235666666665322211111111000 1
Q ss_pred HHHHhc-cCCCeEEEEEeCCC
Q 042739 282 QNIKKG-LQRMKVLIVLDDVH 301 (505)
Q Consensus 282 ~~l~~~-l~~~~~LlVlDdv~ 301 (505)
+..... ..++++||++|+++
T Consensus 246 e~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChH
Confidence 111111 35789999999994
No 143
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.79 E-value=0.0012 Score=73.01 Aligned_cols=118 Identities=14% Similarity=0.194 Sum_probs=65.9
Q ss_pred CCceechhhHHHHHHhhhccC------C-CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHH
Q 042739 188 DGFIGINSRIEEIKSLLCLES------H-DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRV 260 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~------~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 260 (505)
..++|.+..++.+...+.... . ....+.++|++|+|||+||+.++..+.......+.+. ........
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d-~s~~~~~~----- 638 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID-MSEYMEKH----- 638 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe-chhhcccc-----
Confidence 458999999999988886421 1 1357889999999999999999987644322222222 22111111
Q ss_pred HHHHHHHHhCCCCccCCCCchHHHHhccCCC-eEEEEEeCCC-CCHHHHHHHhcCc
Q 042739 261 RDEVISQVLGENLKVGTLTIPQNIKKGLQRM-KVLIVLDDVH-DEFTQLESLAGVI 314 (505)
Q Consensus 261 ~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~-~~~~~~~~l~~~l 314 (505)
....+.+...+....+....+...+..+ ..+|+||+++ ...+....|+..+
T Consensus 639 ---~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l 691 (852)
T TIGR03346 639 ---SVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVL 691 (852)
T ss_pred ---hHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHH
Confidence 1122223222211111122233333222 3599999996 3455555555544
No 144
>PRK12377 putative replication protein; Provisional
Probab=97.77 E-value=0.00015 Score=67.33 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=28.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
...+.|+|++|+|||+||..+++.+......+.++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 457889999999999999999998766544445544
No 145
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.75 E-value=3.7e-05 Score=67.91 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=26.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
..-+.|+|++|+|||.||..+++.+......+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 456889999999999999999988665444455554
No 146
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.75 E-value=0.00046 Score=60.00 Aligned_cols=139 Identities=14% Similarity=0.145 Sum_probs=73.5
Q ss_pred echhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc--------------------ccceEEEeecccc
Q 042739 192 GINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY--------------------FQGNCFMANVREE 251 (505)
Q Consensus 192 GR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------------------f~~~~~~~~~~~~ 251 (505)
|-+...+.|.+.+..+ .-+..+.++|+.|+||+++|..+++.+-.. ++...++... ..
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD-KK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT-TS
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc-cc
Confidence 4455667777777532 235678999999999999999999875221 1222222100 00
Q ss_pred cccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc
Q 042739 252 SNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK 330 (505)
Q Consensus 252 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~ 330 (505)
...... +..+++...+... -..+..=++||||++ .+.+....|+..+...+.++.+|++|.+.
T Consensus 79 ~~~i~i-~~ir~i~~~~~~~---------------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 79 KKSIKI-DQIREIIEFLSLS---------------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSBSH-HHHHHHHHHCTSS----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred cchhhH-HHHHHHHHHHHHH---------------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 000011 1111222111110 012345689999996 46677788888887777888988888876
Q ss_pred hh-hcc-cCCCcEEEcCCCC
Q 042739 331 RV-LDK-CEVSNIFEVKGLE 348 (505)
Q Consensus 331 ~~-~~~-~~~~~~~~l~~L~ 348 (505)
.. +.. ......+.+.+|+
T Consensus 143 ~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 143 SKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGS-HHHHTTSEEEEE----
T ss_pred HHChHHHHhhceEEecCCCC
Confidence 32 222 2334567776654
No 147
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.75 E-value=0.00038 Score=75.84 Aligned_cols=180 Identities=17% Similarity=0.203 Sum_probs=96.9
Q ss_pred CCCceechhhHHHHHHhhhc-----------cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccc
Q 042739 187 LDGFIGINSRIEEIKSLLCL-----------ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKL 255 (505)
Q Consensus 187 ~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 255 (505)
-..+.|.+...+.|.+.+.. +-..++-+.++|++|+|||+||+.++......| +....
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~------- 520 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRG------- 520 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEeh-------
Confidence 34567888887777775531 112345688999999999999999999865432 11110
Q ss_pred cHHHHHHHHHHHHhCCCCccCCCCc-hHHHHhccCCCeEEEEEeCCCCCH--------------HHHHHHhcCcCCC--C
Q 042739 256 GVIRVRDEVISQVLGENLKVGTLTI-PQNIKKGLQRMKVLIVLDDVHDEF--------------TQLESLAGVIDRF--S 318 (505)
Q Consensus 256 ~~~~~~~~ll~~~~~~~~~~~~~~~-~~~l~~~l~~~~~LlVlDdv~~~~--------------~~~~~l~~~l~~~--~ 318 (505)
.+++....+.. ... ...+...-...+++|+||+++ .. .....++..+... .
T Consensus 521 ------~~l~~~~vGes-----e~~i~~~f~~A~~~~p~iifiDEid-~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 521 ------PEILSKWVGES-----EKAIREIFRKARQAAPAIIFFDEID-AIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred ------HHHhhcccCcH-----HHHHHHHHHHHHhcCCEEEEEEChh-hhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 01111111100 001 112222223568999999983 11 1223344333321 2
Q ss_pred CCCEEEEEeCcchhhc-c----cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChH-HHHHHH
Q 042739 319 PGSRIIITTRDKRVLD-K----CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPL-ALEVLG 392 (505)
Q Consensus 319 ~~~~iliTsR~~~~~~-~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~~ 392 (505)
.+..||.||.....+. . ......+.++..+.++-.++|..+..+..... ......+++.|.|+-- .|..++
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~---~~~l~~la~~t~g~sgadi~~~~ 665 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAE---DVDLEELAEMTEGYTGADIEAVC 665 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCc---cCCHHHHHHHcCCCCHHHHHHHH
Confidence 3445555665443221 1 12456788999999999999876653222111 1124567777877643 344433
No 148
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=0.00079 Score=66.10 Aligned_cols=205 Identities=16% Similarity=0.206 Sum_probs=115.0
Q ss_pred CCCCCceechhhHHHHHHhhhc--cCCCceEEEEeccCcchHHHHHHHHHhhhcccccc--eEEEeecccccccccHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCL--ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQG--NCFMANVREESNKLGVIRV 260 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~ 260 (505)
..+..++||+.|+..+..++.. ..+..+.+-|.|-+|.|||.+...++.+....... .+++.. ..-.....+
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc----~sl~~~~ai 222 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINC----TSLTEASAI 222 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEee----ccccchHHH
Confidence 5567899999999999999874 33446788899999999999999999887665443 244442 111334445
Q ss_pred HHHHHHHHhCCCCccCCC-CchHHHHhccCC--CeEEEEEeCCCCCHHH--HHHHhcCcCCC-CCCCEEEEEeCcc----
Q 042739 261 RDEVISQVLGENLKVGTL-TIPQNIKKGLQR--MKVLIVLDDVHDEFTQ--LESLAGVIDRF-SPGSRIIITTRDK---- 330 (505)
Q Consensus 261 ~~~ll~~~~~~~~~~~~~-~~~~~l~~~l~~--~~~LlVlDdv~~~~~~--~~~l~~~l~~~-~~~~~iliTsR~~---- 330 (505)
+..+...+.......+.. +....+.....+ ..+|+|+|.. |.... ...+...+.|. -+++++|+..--.
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEm-D~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEM-DHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechh-hHHhhcccceeeeehhcccCCcceeeeeeehhhhhH
Confidence 555555553322222222 224444444433 4789999998 42221 01111111111 2344544432211
Q ss_pred --hhhcccC-----CCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 042739 331 --RVLDKCE-----VSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSL 395 (505)
Q Consensus 331 --~~~~~~~-----~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 395 (505)
..+..+. ....+..+|.+.++..++|..++-.. .........++.+++++.|.---++.+....
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~-~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~ 372 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE-STSIFLNAAIELCARKVAAPSGDLRKALDVC 372 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc-cccccchHHHHHHHHHhccCchhHHHHHHHH
Confidence 1122221 23468889999999999999888322 1122223344555555555554444444433
No 149
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.74 E-value=0.00044 Score=75.14 Aligned_cols=115 Identities=15% Similarity=0.176 Sum_probs=64.2
Q ss_pred CCceechhhHHHHHHhhhcc------CC-CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHH
Q 042739 188 DGFIGINSRIEEIKSLLCLE------SH-DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRV 260 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~------~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 260 (505)
...+|-+..++.+...+... .+ ....+.++|++|+|||.||+.++..+... .+.+. ..+......
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~---~~~~d-~se~~~~~~---- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVH---LERFD-MSEYMEKHT---- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCC---eEEEe-Cchhhhccc----
Confidence 45789888888888877631 11 23468899999999999999999877322 12222 221111111
Q ss_pred HHHHHHHHhCCCCccCCCCchHHHHhccCC-CeEEEEEeCCC-CCHHHHHHHhcCc
Q 042739 261 RDEVISQVLGENLKVGTLTIPQNIKKGLQR-MKVLIVLDDVH-DEFTQLESLAGVI 314 (505)
Q Consensus 261 ~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~-~~~~~~~~l~~~l 314 (505)
...+.+...+.-..+....+.+.++. ...+++||+++ ...+....|+..+
T Consensus 526 ----~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~l 577 (731)
T TIGR02639 526 ----VSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVM 577 (731)
T ss_pred ----HHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhh
Confidence 12222222211111222233444333 34699999996 3455555555544
No 150
>PRK09183 transposase/IS protein; Provisional
Probab=97.73 E-value=0.00011 Score=69.10 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=22.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
...+.|+|++|+|||+||..++.....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 346889999999999999999877543
No 151
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00014 Score=74.91 Aligned_cols=158 Identities=16% Similarity=0.228 Sum_probs=87.1
Q ss_pred CceechhhHHHHHHhhhc----cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHH
Q 042739 189 GFIGINSRIEEIKSLLCL----ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEV 264 (505)
Q Consensus 189 ~fvGR~~el~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 264 (505)
.-+|.++..+++.+.|.- ..-..++++++||||+|||+|++.+++-+.+.|- -..++++.+...+..
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv----R~sLGGvrDEAEIRG----- 394 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV----RISLGGVRDEAEIRG----- 394 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE----EEecCccccHHHhcc-----
Confidence 578999999999998863 2234689999999999999999999998877663 122333332111110
Q ss_pred HHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCCH------HHHHHHhcCc------------CCCCC-CCE-EE
Q 042739 265 ISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDEF------TQLESLAGVI------------DRFSP-GSR-II 324 (505)
Q Consensus 265 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~~~~~l~~~l------------~~~~~-~~~-il 324 (505)
......+.......+.+++ ...++-|++||.+. .. +-..+++..+ ....- -|. +.
T Consensus 395 ---HRRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEID-Km~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 395 ---HRRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEID-KMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ---ccccccccCChHHHHHHHH-hCCcCCeEEeechh-hccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 0000001111111222222 23456689999993 10 1111222111 11110 122 33
Q ss_pred EEeCcc-h--hhcccCCCcEEEcCCCCHhHHHHHHHHhh
Q 042739 325 ITTRDK-R--VLDKCEVSNIFEVKGLEHNKAFELFCRKA 360 (505)
Q Consensus 325 iTsR~~-~--~~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 360 (505)
|+|-+. . ..+.+....++++.+.+.+|-.++-.+++
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 444332 2 12233455789999999999888887776
No 152
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.69 E-value=0.0011 Score=62.31 Aligned_cols=172 Identities=20% Similarity=0.234 Sum_probs=98.5
Q ss_pred CCceechhhHHHHHHhhhc--cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccc--cccHHHHHHH
Q 042739 188 DGFIGINSRIEEIKSLLCL--ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESN--KLGVIRVRDE 263 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~~~~~ 263 (505)
..|+|-.++...+..++.+ -.++...|.|.||.|.|||.|......+ .+.+......+.+.+.-. ...+..+.++
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHH
Confidence 4599999999999999874 2344567889999999999998877766 344444444554443322 2223333333
Q ss_pred HHHHHhCCCCccCCCCc-hHHHHhccC------CCeEEEEEeCCC-----CCHHHHHHHhcCcCCC-CCCCEEEEEeCcc
Q 042739 264 VISQVLGENLKVGTLTI-PQNIKKGLQ------RMKVLIVLDDVH-----DEFTQLESLAGVIDRF-SPGSRIIITTRDK 330 (505)
Q Consensus 264 ll~~~~~~~~~~~~~~~-~~~l~~~l~------~~~~LlVlDdv~-----~~~~~~~~l~~~l~~~-~~~~~iliTsR~~ 330 (505)
+-.++............ ...+...|. +.++++|+|.+. .....+-.+...-... .+-|-|-+|||-.
T Consensus 103 l~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 103 LALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred HHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 33333222222222222 444544444 237899999883 1122222333222211 3344556788854
Q ss_pred -------hhhcccCCCcEEEcCCCCHhHHHHHHHHhh
Q 042739 331 -------RVLDKCEVSNIFEVKGLEHNKAFELFCRKA 360 (505)
Q Consensus 331 -------~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 360 (505)
.+-+......++-++.++-++-.+++++..
T Consensus 183 ~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 183 ILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 222233333356677889999999998877
No 153
>PRK06526 transposase; Provisional
Probab=97.67 E-value=9.9e-05 Score=69.01 Aligned_cols=28 Identities=25% Similarity=0.154 Sum_probs=23.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
...+.|+|++|+|||+||..++......
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 4568999999999999999999876543
No 154
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00091 Score=68.81 Aligned_cols=162 Identities=14% Similarity=0.133 Sum_probs=86.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCC
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQR 290 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~ 290 (505)
.+.|.|.|+.|+|||+|+++++..+.....+.+-+..+..... ..+.. ++..+.. .+.+.+..
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~-~~~e~-iQk~l~~---------------vfse~~~~ 493 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDG-SSLEK-IQKFLNN---------------VFSEALWY 493 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccc-hhHHH-HHHHHHH---------------HHHHHHhh
Confidence 5678999999999999999999987754333333333322221 11222 2222222 23334456
Q ss_pred CeEEEEEeCCCCCH---------------HHHHHHh----cCcCCCCCCCEEEEEeCcchhhc-----ccCCCcEEEcCC
Q 042739 291 MKVLIVLDDVHDEF---------------TQLESLA----GVIDRFSPGSRIIITTRDKRVLD-----KCEVSNIFEVKG 346 (505)
Q Consensus 291 ~~~LlVlDdv~~~~---------------~~~~~l~----~~l~~~~~~~~iliTsR~~~~~~-----~~~~~~~~~l~~ 346 (505)
.|-+|||||++ .. .-+..++ ......+....+|.|..+...+. ..-......|++
T Consensus 494 ~PSiIvLDdld-~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 494 APSIIVLDDLD-CLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred CCcEEEEcchh-hhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 68899999993 11 0111111 11111122234555555432211 112334688999
Q ss_pred CCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCC-hHHHHHHH
Q 042739 347 LEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGN-PLALEVLG 392 (505)
Q Consensus 347 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~ 392 (505)
+...+-.++++..... .. .....+...-+..+|+|+ |.-+.++.
T Consensus 573 p~~~~R~~IL~~~~s~-~~-~~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSK-NL-SDITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred cchhHHHHHHHHHHHh-hh-hhhhhHHHHHHHHhcCCccchhHHHHH
Confidence 9998888888765521 11 222334445588888886 55554444
No 155
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.65 E-value=9e-05 Score=72.51 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=58.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc-ccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCc---h----
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY-FQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTI---P---- 281 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~---~---- 281 (505)
....++|+|++|+|||||+..+++.+... |+..+|+...++ .+..+.++++.++..+.......+.... .
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 45688999999999999999999987655 777788774432 2346777777775443322221111111 1
Q ss_pred HHHH-hccCCCeEEEEEeCCC
Q 042739 282 QNIK-KGLQRMKVLIVLDDVH 301 (505)
Q Consensus 282 ~~l~-~~l~~~~~LlVlDdv~ 301 (505)
+... ....+++++|++|.++
T Consensus 245 e~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChh
Confidence 1111 1135789999999995
No 156
>PRK06921 hypothetical protein; Provisional
Probab=97.65 E-value=0.00011 Score=69.27 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=28.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhccc-ccceEEEe
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRY-FQGNCFMA 246 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 246 (505)
...+.++|++|+|||+||..+++.+... ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 5678999999999999999999987665 33455554
No 157
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.65 E-value=0.0025 Score=66.95 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=42.3
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.....++|....++++.+.+..-......|.|+|++|+|||++|+.+.+.-.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 4456799999999999988865444455788999999999999999987643
No 158
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00054 Score=68.04 Aligned_cols=131 Identities=19% Similarity=0.203 Sum_probs=72.6
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHH-HHHHHHhCCCCccCCCCchHHHHhc
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRD-EVISQVLGENLKVGTLTIPQNIKKG 287 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~~~~~~~~l~~~ 287 (505)
.+...+.+.|++|+|||+||.+++.. ..|+.+-.+. ..+..++.+..+ ..+ ...+.+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS----pe~miG~sEsaKc~~i---------------~k~F~DA 594 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS----PEDMIGLSESAKCAHI---------------KKIFEDA 594 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC----hHHccCccHHHHHHHH---------------HHHHHHh
Confidence 34677889999999999999999875 5676444333 111111111000 000 1112222
Q ss_pred cCCCeEEEEEeCCCC-----------CHHHHHHHhcCcCCCC---CCCEEEEEeCcchhhcccC----CCcEEEcCCCCH
Q 042739 288 LQRMKVLIVLDDVHD-----------EFTQLESLAGVIDRFS---PGSRIIITTRDKRVLDKCE----VSNIFEVKGLEH 349 (505)
Q Consensus 288 l~~~~~LlVlDdv~~-----------~~~~~~~l~~~l~~~~---~~~~iliTsR~~~~~~~~~----~~~~~~l~~L~~ 349 (505)
-+..--+||+||++. +-..+..|.-.+...+ ...-|+-||....++..++ ....+.++.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 334456899999941 1122333333333222 2334455777777777664 345789999987
Q ss_pred -hHHHHHHHHhh
Q 042739 350 -NKAFELFCRKA 360 (505)
Q Consensus 350 -~ea~~L~~~~~ 360 (505)
++..+.++..-
T Consensus 675 ~~~~~~vl~~~n 686 (744)
T KOG0741|consen 675 GEQLLEVLEELN 686 (744)
T ss_pred hHHHHHHHHHcc
Confidence 67777776543
No 159
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.64 E-value=0.00094 Score=73.55 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=65.2
Q ss_pred CCceechhhHHHHHHhhhccC------CC-ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHH
Q 042739 188 DGFIGINSRIEEIKSLLCLES------HD-ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRV 260 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~------~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 260 (505)
..++|.+..++.+...+.... +. ...+.++|++|+|||+||+.++..+.......+.+. ......
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id-~se~~~------- 639 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID-MSEFME------- 639 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE-hHHhhh-------
Confidence 358899999999888776321 11 247889999999999999999987643322222222 211111
Q ss_pred HHHHHHHHhCCCCccCCCCchHHHHhccCCC-eEEEEEeCCC-CCHHHHHHHhcCc
Q 042739 261 RDEVISQVLGENLKVGTLTIPQNIKKGLQRM-KVLIVLDDVH-DEFTQLESLAGVI 314 (505)
Q Consensus 261 ~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~-~~~~~~~~l~~~l 314 (505)
......+.+........+....+.+.++.+ .-+|+||+++ ...+....+...+
T Consensus 640 -~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~il 694 (857)
T PRK10865 640 -KHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL 694 (857)
T ss_pred -hhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHH
Confidence 112223333322211111122233333322 3699999995 3455555555544
No 160
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.64 E-value=0.001 Score=59.23 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=40.3
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
......||-++-++.|.-...+ ++.+-+.|.||+|+||||-+..+++.+-
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 3445689999999888776653 4577888999999999999999998753
No 161
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.63 E-value=0.0011 Score=64.03 Aligned_cols=30 Identities=33% Similarity=0.591 Sum_probs=26.0
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
..++.++|+|++|+|||.+|+.++..+.-.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 347899999999999999999999987543
No 162
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.63 E-value=0.0026 Score=62.18 Aligned_cols=47 Identities=26% Similarity=0.229 Sum_probs=38.9
Q ss_pred CCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhh
Q 042739 188 DGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
+.++|+...+..+.+.+..-......|.|+|.+|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 45999999999999888754444567889999999999999988754
No 163
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.61 E-value=0.00037 Score=64.56 Aligned_cols=49 Identities=10% Similarity=0.099 Sum_probs=32.8
Q ss_pred HHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEE
Q 042739 197 IEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFM 245 (505)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (505)
+..+.+....-..+...+.++|.+|+|||+|+..+++.+......++++
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3344444432222345788999999999999999999876554444444
No 164
>PRK04132 replication factor C small subunit; Provisional
Probab=97.60 E-value=0.003 Score=68.40 Aligned_cols=158 Identities=17% Similarity=0.165 Sum_probs=94.7
Q ss_pred Eec--cCcchHHHHHHHHHhhh-cccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCe
Q 042739 216 IWG--MGGIGKTTIASVVFHQI-SRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMK 292 (505)
Q Consensus 216 I~G--~~GiGKTtLa~~~~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~ 292 (505)
+.| |.++||||+|..+++++ .+.+...+.-.+. ++..+ .+.+++++........ . -..+.
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNA---Sd~rg-id~IR~iIk~~a~~~~-~------------~~~~~ 631 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNA---SDERG-INVIREKVKEFARTKP-I------------GGASF 631 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeC---CCccc-HHHHHHHHHHHHhcCC-c------------CCCCC
Confidence 447 89999999999999986 2222222222211 22112 2234444443321110 0 01234
Q ss_pred EEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-hhhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChh
Q 042739 293 VLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK-RVLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHD 369 (505)
Q Consensus 293 ~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~ 369 (505)
-++|||+++ .+.+....|...+...+..+++|+++.+. .+... ......+.+.+++.++..+.+...+...+. ..
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi--~i 709 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL--EL 709 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC--CC
Confidence 699999996 34556777777776656677777766654 22222 234568999999999999888776532211 12
Q ss_pred HHHHHHHHHHHhcCChHHHHHHH
Q 042739 370 LYQLSQRVVCYADGNPLALEVLG 392 (505)
Q Consensus 370 ~~~~~~~i~~~~~G~PLal~~~~ 392 (505)
.++....|++.++|.+.....+.
T Consensus 710 ~~e~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 710 TEEGLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 35678899999999986554433
No 165
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.60 E-value=0.00036 Score=70.09 Aligned_cols=46 Identities=20% Similarity=0.109 Sum_probs=38.8
Q ss_pred CCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 188 DGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
..++||++.++.+...+..+ ..|.|.|++|+|||+||+.++.....
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 45999999999999888543 36889999999999999999987644
No 166
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.0013 Score=63.98 Aligned_cols=87 Identities=14% Similarity=0.208 Sum_probs=53.0
Q ss_pred eEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcch-hhccc-CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCCh
Q 042739 292 KVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDKR-VLDKC-EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSH 368 (505)
Q Consensus 292 ~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~ 368 (505)
+-++|+|+++ -+......+...+.....+..+|++|.+.. +...+ .....+.+.+++.+++.+.+.... ...
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~~- 188 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----VAE- 188 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----CCc-
Confidence 4455679885 345555666665554445676777777653 33221 234578999999999998886542 111
Q ss_pred hHHHHHHHHHHHhcCChHHH
Q 042739 369 DLYQLSQRVVCYADGNPLAL 388 (505)
Q Consensus 369 ~~~~~~~~i~~~~~G~PLal 388 (505)
.. ..+..++|.|+..
T Consensus 189 -~~----~~l~~~~g~p~~~ 203 (325)
T PRK08699 189 -PE----ERLAFHSGAPLFD 203 (325)
T ss_pred -HH----HHHHHhCCChhhh
Confidence 11 1235688999643
No 167
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00084 Score=67.91 Aligned_cols=174 Identities=17% Similarity=0.195 Sum_probs=94.0
Q ss_pred CCCCceechhhHHHHHHhhhcc----------CCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccc
Q 042739 186 DLDGFIGINSRIEEIKSLLCLE----------SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKL 255 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 255 (505)
....+=|.+..+.+|.+++..- -..++=|.+|||+|+|||.||+.++.++.-.| +. ++.
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~----isA-- 256 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LS----ISA-- 256 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Ee----ecc--
Confidence 3456789999999998877421 12357789999999999999999999865433 22 111
Q ss_pred cHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCC-------------HHHHHHHhcCcCCC-----
Q 042739 256 GVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDE-------------FTQLESLAGVIDRF----- 317 (505)
Q Consensus 256 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~~l~~~l~~~----- 317 (505)
.++++...++. +....+.+.+.-...+++++||++ |. ......|+..+...
T Consensus 257 ------peivSGvSGES----EkkiRelF~~A~~~aPcivFiDeI-DAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~ 325 (802)
T KOG0733|consen 257 ------PEIVSGVSGES----EKKIRELFDQAKSNAPCIVFIDEI-DAITPKREEAQREMERRIVAQLLTSMDELSNEKT 325 (802)
T ss_pred ------hhhhcccCccc----HHHHHHHHHHHhccCCeEEEeecc-cccccchhhHHHHHHHHHHHHHHHhhhccccccc
Confidence 12222222211 001133334444567999999999 32 11223333332211
Q ss_pred -CCCCEEEE-EeCcchhhccc----CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCC
Q 042739 318 -SPGSRIII-TTRDKRVLDKC----EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGN 384 (505)
Q Consensus 318 -~~~~~ili-TsR~~~~~~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 384 (505)
+.+.-||- |+|...+-+.+ ...+.|.|.--+..+-.+++...+.+-.... . -..++|++.+-|+
T Consensus 326 ~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~--~d~~qlA~lTPGf 395 (802)
T KOG0733|consen 326 KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-D--FDFKQLAKLTPGF 395 (802)
T ss_pred CCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-C--cCHHHHHhcCCCc
Confidence 22333332 44544322221 2345677777777666666665552211111 1 1145666666666
No 168
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.0038 Score=61.11 Aligned_cols=146 Identities=12% Similarity=0.100 Sum_probs=81.0
Q ss_pred ceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccccc---------------------ceEEEeec
Q 042739 190 FIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQ---------------------GNCFMANV 248 (505)
Q Consensus 190 fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~~~~~~~ 248 (505)
++|-+.....+..+........+.+.++|++|+|||++|..+++.+-...+ ....+...
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 566677777787777644344556999999999999999999998653221 11111100
Q ss_pred ccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEe
Q 042739 249 REESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITT 327 (505)
Q Consensus 249 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTs 327 (505)
......-..+..+++........ ..++.-+++||+++ .+.+....+...+........+|++|
T Consensus 83 -~~~~~~i~~~~vr~~~~~~~~~~---------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 83 -DLRKIDIIVEQVRELAEFLSESP---------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred -ccCCCcchHHHHHHHHHHhccCC---------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 00000001222222222211110 02456799999994 23445566666666556777888777
Q ss_pred Ccc-hhhccc-CCCcEEEcCCCCHhH
Q 042739 328 RDK-RVLDKC-EVSNIFEVKGLEHNK 351 (505)
Q Consensus 328 R~~-~~~~~~-~~~~~~~l~~L~~~e 351 (505)
.+. .+.... .....+++.+.+..+
T Consensus 147 n~~~~il~tI~SRc~~i~f~~~~~~~ 172 (325)
T COG0470 147 NDPSKILPTIRSRCQRIRFKPPSRLE 172 (325)
T ss_pred CChhhccchhhhcceeeecCCchHHH
Confidence 643 333322 234567777744433
No 169
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00047 Score=73.00 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=78.3
Q ss_pred CCceechhhHHHHHHhhhcc-------CCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHH
Q 042739 188 DGFIGINSRIEEIKSLLCLE-------SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRV 260 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 260 (505)
...+|-+.-+..+.+.+... +.........||.|+|||.||+.++..+-..=...+-+. .++..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy~-------- 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEYM-------- 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-hHHHH--------
Confidence 35889998888888877532 222567888999999999999999998654322222222 22211
Q ss_pred HHHHHHHHhCCCCccCCCCchHHHHhccCCCeE-EEEEeCCC-CCHHHHHHHhcCcC
Q 042739 261 RDEVISQVLGENLKVGTLTIPQNIKKGLQRMKV-LIVLDDVH-DEFTQLESLAGVID 315 (505)
Q Consensus 261 ~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~-~~~~~~~~l~~~l~ 315 (505)
-+.-.+.+.+.+++.-..+....|-+..+++|+ +|.||+++ ...+....|+..+.
T Consensus 562 EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 562 EKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred HHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 233455666666644444445566677777876 89999997 56677777766554
No 170
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.54 E-value=0.0006 Score=65.64 Aligned_cols=55 Identities=9% Similarity=0.141 Sum_probs=36.0
Q ss_pred echhhHHHHHHhhhccC--CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 192 GINSRIEEIKSLLCLES--HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 192 GR~~el~~l~~~L~~~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
+|...+....+++..-. ...+-+.|+|+.|+|||.||..+++.+......+.|+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 34444444444444211 13467889999999999999999999765544455554
No 171
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.53 E-value=0.0016 Score=63.48 Aligned_cols=46 Identities=26% Similarity=0.205 Sum_probs=36.2
Q ss_pred ceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 190 FIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 190 fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
++|+...++++.+.+..-......|.|+|.+|+||+++|+.+...-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4788888888888776544445678899999999999999887653
No 172
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.53 E-value=0.0024 Score=57.36 Aligned_cols=57 Identities=21% Similarity=0.353 Sum_probs=43.2
Q ss_pred CCCCCceechhhHHHHHHhhhc--cCCCceEEEEeccCcchHHHHHHHHHhhhcccccc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCL--ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQG 241 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 241 (505)
.+-..++|-+...+.|.+.... ..-...-|.+||.-|.|||+|++.+...+...+..
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 3445689999988888764432 22235678899999999999999999998776654
No 173
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0004 Score=71.42 Aligned_cols=52 Identities=27% Similarity=0.438 Sum_probs=43.7
Q ss_pred CceechhhHHHHHHhhhc----cCCCceEEEEeccCcchHHHHHHHHHhhhccccc
Q 042739 189 GFIGINSRIEEIKSLLCL----ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQ 240 (505)
Q Consensus 189 ~fvGR~~el~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 240 (505)
.-+|.++-.+++.+.+.- ++-+.++++++||+|+|||++++.++..+.+.|.
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 468999999999998862 3445789999999999999999999998876653
No 174
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.50 E-value=0.00039 Score=67.44 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=28.3
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
..+.++|++|+|||+||..+++.+......++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67899999999999999999998765544455554
No 175
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.50 E-value=0.00046 Score=75.75 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=38.3
Q ss_pred CCceechhhHHHHHHhhhcc-------CCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 188 DGFIGINSRIEEIKSLLCLE-------SHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
...+|-+.-++.+.+.+... .....++.++|++|+|||.||+.++..+-.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 35788888888888877421 112347899999999999999999987643
No 176
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.49 E-value=0.00045 Score=61.81 Aligned_cols=124 Identities=17% Similarity=0.176 Sum_probs=59.8
Q ss_pred echhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh--cccccceEEEeeccccccc-----ccHH------
Q 042739 192 GINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI--SRYFQGNCFMANVREESNK-----LGVI------ 258 (505)
Q Consensus 192 GR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~--~~~f~~~~~~~~~~~~~~~-----~~~~------ 258 (505)
.+..+.....+.|. ...++.+.|++|.|||.||...+-+. ...|...++....-..... .+..
T Consensus 4 p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 4 PKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp --SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 34556666666665 34599999999999999999988653 3556666665433221110 0110
Q ss_pred -HHHHHHHHHHhCCCCccCCCCchHHHH----------hccCCC---eEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEE
Q 042739 259 -RVRDEVISQVLGENLKVGTLTIPQNIK----------KGLQRM---KVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRI 323 (505)
Q Consensus 259 -~~~~~ll~~~~~~~~~~~~~~~~~~l~----------~~l~~~---~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~i 323 (505)
.-+.+.+..+.+ ....+.+. ..++++ ..+||+|+++ .+..++..++.. .+.+|++
T Consensus 80 ~~p~~d~l~~~~~-------~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~ski 149 (205)
T PF02562_consen 80 LRPIYDALEELFG-------KEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKI 149 (205)
T ss_dssp THHHHHHHTTTS--------TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EE
T ss_pred HHHHHHHHHHHhC-------hHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEE
Confidence 011111111111 11111111 233443 5799999996 455666666554 4789999
Q ss_pred EEEeCc
Q 042739 324 IITTRD 329 (505)
Q Consensus 324 liTsR~ 329 (505)
+++.-.
T Consensus 150 i~~GD~ 155 (205)
T PF02562_consen 150 IITGDP 155 (205)
T ss_dssp EEEE--
T ss_pred EEecCc
Confidence 998764
No 177
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.49 E-value=0.00062 Score=74.93 Aligned_cols=119 Identities=13% Similarity=0.181 Sum_probs=66.4
Q ss_pred CCceechhhHHHHHHhhhcc------CCC-ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHH
Q 042739 188 DGFIGINSRIEEIKSLLCLE------SHD-ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRV 260 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~------~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 260 (505)
..++|-+.-++.+...+... .+. ...+.++||+|+|||+||+.+++.+-......+-+ +..........
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~~~~~--- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRL-DMSEYMEKHTV--- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEE-EchhccccccH---
Confidence 45889888888888877521 111 34677999999999999999998763322222222 22222222221
Q ss_pred HHHHHHHHhCCCCccCCCCchHHHHhccCCCe-EEEEEeCCC-CCHHHHHHHhcCcC
Q 042739 261 RDEVISQVLGENLKVGTLTIPQNIKKGLQRMK-VLIVLDDVH-DEFTQLESLAGVID 315 (505)
Q Consensus 261 ~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~-~LlVlDdv~-~~~~~~~~l~~~l~ 315 (505)
..+.+...+.-..+....+.+.++.++ .+++||+++ ...+....|+..+.
T Consensus 585 -----~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le 636 (821)
T CHL00095 585 -----SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILD 636 (821)
T ss_pred -----HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhc
Confidence 122222221111122233444555444 589999996 45555666655543
No 178
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.45 E-value=0.00092 Score=58.36 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=34.6
Q ss_pred ceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 190 FIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 190 fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
+||.+..+.++.+.+..-......|.|+|..|.||+.+|+.+.+.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 4788888888888876544444677899999999999999998743
No 179
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.45 E-value=0.006 Score=63.53 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=42.7
Q ss_pred CCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 186 DLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
....++|+...++++.+.+..-......|.|+|..|+|||.+|+.+.+.-.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 346699999999999998876555566889999999999999999987644
No 180
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.00062 Score=63.75 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=28.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
...-+.++|++|+|||.||..+++++......+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4567889999999999999999999874334444544
No 181
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.40 E-value=0.00027 Score=59.74 Aligned_cols=107 Identities=17% Similarity=0.228 Sum_probs=61.2
Q ss_pred eechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe-ecccccccccHHHHHHHHHHHHh
Q 042739 191 IGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA-NVREESNKLGVIRVRDEVISQVL 269 (505)
Q Consensus 191 vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~ 269 (505)
||+...++++.+.+..-......|.|+|++|+||+++|+.+...-... ...++. .+... + .+++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~--~~~~~~~~~~~~--~-------~~~l~~-- 67 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRA--NGPFIVIDCASL--P-------AELLEQ-- 67 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTC--CS-CCCCCHHCT--C-------HHHHHH--
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCcc--CCCeEEechhhC--c-------HHHHHH--
Confidence 577888888888776544455678899999999999999887754332 112221 11110 0 111111
Q ss_pred CCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCC-CCCCEEEEEeCcc
Q 042739 270 GENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRF-SPGSRIIITTRDK 330 (505)
Q Consensus 270 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~-~~~~~iliTsR~~ 330 (505)
. +.-.|+|+|++ -+.+....+...+... ....++|.||+..
T Consensus 68 ------------------a--~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 68 ------------------A--KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ------------------C--TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ------------------c--CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 1 33468899995 2334444444444322 4678999999865
No 182
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.39 E-value=0.0076 Score=65.31 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=39.8
Q ss_pred CCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 187 LDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 187 ~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...++|+...+..+.+.+..-......|.|+|++|+|||.+|+.+...-
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 3469999999999887776443445678899999999999999998764
No 183
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.37 E-value=0.0024 Score=66.60 Aligned_cols=46 Identities=35% Similarity=0.591 Sum_probs=37.5
Q ss_pred CCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhh
Q 042739 187 LDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 187 ~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...++|.+..++.+...+.. .....+.|+|++|+|||++|+.+.+.
T Consensus 64 f~~iiGqs~~i~~l~~al~~--~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCG--PNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999987653 23456789999999999999998764
No 184
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.36 E-value=0.0001 Score=62.43 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=20.8
Q ss_pred EEEeccCcchHHHHHHHHHhhh
Q 042739 214 VGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999988
No 185
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.36 E-value=0.0068 Score=65.95 Aligned_cols=51 Identities=20% Similarity=0.374 Sum_probs=41.0
Q ss_pred CceechhhHHHHHHhhhc----cCCCceEEEEeccCcchHHHHHHHHHhhhcccc
Q 042739 189 GFIGINSRIEEIKSLLCL----ESHDARIVGIWGMGGIGKTTIASVVFHQISRYF 239 (505)
Q Consensus 189 ~fvGR~~el~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (505)
..+|.++..++|.++|.. ......++.++|++|+|||++++.++..+...|
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 489999999999888863 122456899999999999999999998765443
No 186
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.34 E-value=0.00031 Score=69.96 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=37.9
Q ss_pred CCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 188 DGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
...++.+..++.+...|.. .+.+.++|++|+|||++|+.++..+..
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4577788889999888853 347788999999999999999988643
No 187
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00086 Score=72.26 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=38.5
Q ss_pred CCceechhhHHHHHHhhhcc-------CCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 188 DGFIGINSRIEEIKSLLCLE-------SHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..++|-+..++.|...+... ......+.++|++|+|||.||+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999998888877621 11235788999999999999999998873
No 188
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.33 E-value=0.0067 Score=58.65 Aligned_cols=49 Identities=29% Similarity=0.217 Sum_probs=35.3
Q ss_pred EEEcCCCCHhHHHHHHHHhhcCCCCCC-hhHHHHHHHHHHHhcCChHHHH
Q 042739 341 IFEVKGLEHNKAFELFCRKAFGQNNRS-HDLYQLSQRVVCYADGNPLALE 389 (505)
Q Consensus 341 ~~~l~~L~~~ea~~L~~~~~~~~~~~~-~~~~~~~~~i~~~~~G~PLal~ 389 (505)
.+++++++.+|+..++..+.-.+-... ...+...+++.-..+|||.-+.
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~ 307 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELE 307 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhc
Confidence 789999999999999987773332222 3345566677777799997653
No 189
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.29 E-value=0.0093 Score=61.69 Aligned_cols=200 Identities=12% Similarity=0.152 Sum_probs=119.3
Q ss_pred CCCCCceechhhHHHHHHhhhc---cCCCceEEEEeccCcchHHHHHHHHHhhhc-----ccccc--eEEEeeccccccc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCL---ESHDARIVGIWGMGGIGKTTIASVVFHQIS-----RYFQG--NCFMANVREESNK 254 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-----~~f~~--~~~~~~~~~~~~~ 254 (505)
..+..+-+|+.|..+|...+.. .++....+-|+|.+|.|||..+..+.+.+. ..-+. .+.++. ..-
T Consensus 393 ~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINg----m~l 468 (767)
T KOG1514|consen 393 AVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEING----LRL 468 (767)
T ss_pred hccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcc----eee
Confidence 4567788999999999998863 224466999999999999999999998653 11222 333332 223
Q ss_pred ccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccC-----CCeEEEEEeCCC----CCHHHHHHHhcCcCCCCCCCEEEE
Q 042739 255 LGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQ-----RMKVLIVLDDVH----DEFTQLESLAGVIDRFSPGSRIII 325 (505)
Q Consensus 255 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~----~~~~~~~~l~~~l~~~~~~~~ili 325 (505)
.....+...+...+.+.... .....+.|..+.. .+++++++|++. ...+.+-.+..... .++++++|
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~--~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt--~~~sKLvv 544 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVT--WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPT--LKNSKLVV 544 (767)
T ss_pred cCHHHHHHHHHHhcccCccc--HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCc--CCCCceEE
Confidence 34666667777766554331 1111444444433 468999999993 22444444443322 35666655
Q ss_pred EeC-cc-h---------hhcccCCCcEEEcCCCCHhHHHHHHHHhhcCCCC-CChhHHHHHHHHHHHhcCChHHHHHHHH
Q 042739 326 TTR-DK-R---------VLDKCEVSNIFEVKGLEHNKAFELFCRKAFGQNN-RSHDLYQLSQRVVCYADGNPLALEVLGS 393 (505)
Q Consensus 326 TsR-~~-~---------~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~-~~~~~~~~~~~i~~~~~G~PLal~~~~~ 393 (505)
.+= +. + +...+ +...+...|.+.++-.+++..++.+... .....+-.+++++...|..=.|+...-+
T Consensus 545 i~IaNTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 545 IAIANTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred EEecccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 432 11 1 11111 3356888999999999999887733221 1223344455565556665555555444
No 190
>PRK04296 thymidine kinase; Provisional
Probab=97.26 E-value=0.00047 Score=61.72 Aligned_cols=111 Identities=18% Similarity=0.104 Sum_probs=58.5
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCc--cCCCCc-hHHHHhcc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLK--VGTLTI-PQNIKKGL 288 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~~~~~-~~~l~~~l 288 (505)
.++.|+|+.|.||||++..++.+...+...++++.. ........ ..+...+...... ...... ...+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~--~~d~~~~~----~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP--AIDDRYGE----GKVVSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec--cccccccC----CcEecCCCCcccceEeCChHHHHHHHHh-h
Confidence 478899999999999999999887555433333320 00111111 1112222111000 111111 222333 2
Q ss_pred CCCeEEEEEeCCCC-CHHHHHHHhcCcCCCCCCCEEEEEeCcch
Q 042739 289 QRMKVLIVLDDVHD-EFTQLESLAGVIDRFSPGSRIIITTRDKR 331 (505)
Q Consensus 289 ~~~~~LlVlDdv~~-~~~~~~~l~~~l~~~~~~~~iliTsR~~~ 331 (505)
.++.-+||+|.++. +.+++..+...+. ..+..|++|.++..
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 33556999999962 2333444444332 46888999998753
No 191
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.26 E-value=0.0016 Score=56.49 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=26.1
Q ss_pred EEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 214 VGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
+.|+|++|+|||+++..++..........+|+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 679999999999999999988765444455554
No 192
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.26 E-value=0.0035 Score=68.63 Aligned_cols=51 Identities=24% Similarity=0.413 Sum_probs=39.3
Q ss_pred CceechhhHHHHHHhhhc----cCCCceEEEEeccCcchHHHHHHHHHhhhcccc
Q 042739 189 GFIGINSRIEEIKSLLCL----ESHDARIVGIWGMGGIGKTTIASVVFHQISRYF 239 (505)
Q Consensus 189 ~fvGR~~el~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (505)
..+|.+.-.+.+.+++.. .....+.+.++|++|+|||++|+.++..+...|
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 477888888888876642 222345899999999999999999999875543
No 193
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.25 E-value=0.00069 Score=62.24 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=35.6
Q ss_pred HHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 198 EEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
..|..+|..+-....++.|+|++|+|||+||.+++.........++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3445555433345789999999999999999999988755544556664
No 194
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.24 E-value=0.00081 Score=65.47 Aligned_cols=99 Identities=15% Similarity=0.093 Sum_probs=57.2
Q ss_pred HHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccce-EEEeecccccccccHHHHHHHHHHHHhCCCCccCC
Q 042739 199 EIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGN-CFMANVREESNKLGVIRVRDEVISQVLGENLKVGT 277 (505)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 277 (505)
++.+.+..- +..+.+.|+|++|+|||||++.+++.+....+.. +++..+. .....+.++++.+...+.........
T Consensus 122 RvID~l~Pi-GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIg--ER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 122 RVVDLVAPI-GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLID--ERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hhhhheeec-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEec--CCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 355555421 2345678999999999999999999876654332 2333222 23445666777766654432211111
Q ss_pred CCc---h---HHHHhc--cCCCeEEEEEeCC
Q 042739 278 LTI---P---QNIKKG--LQRMKVLIVLDDV 300 (505)
Q Consensus 278 ~~~---~---~~l~~~--l~~~~~LlVlDdv 300 (505)
... . ....++ -.+++++||+|++
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 111 1 111111 1478999999999
No 195
>PRK08118 topology modulation protein; Reviewed
Probab=97.23 E-value=0.00068 Score=59.25 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.8
Q ss_pred EEEEeccCcchHHHHHHHHHhhhc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.|.|+|++|+||||||+.++..+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998864
No 196
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.001 Score=62.17 Aligned_cols=36 Identities=17% Similarity=0.394 Sum_probs=28.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh----cccccceEEEe
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI----SRYFQGNCFMA 246 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~----~~~f~~~~~~~ 246 (505)
.|++.++||||.|||+|++.+++++ .+.|..+..+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 5899999999999999999999975 34455555443
No 197
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.23 E-value=0.00055 Score=62.72 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=29.1
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
-.++|.|.+|+|||+|+..+.......|...+++.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 36779999999999999999999888886555443
No 198
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.22 E-value=0.0012 Score=60.89 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=35.7
Q ss_pred HHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 199 EIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
.|-+.|..+-....++.|+|++|+|||+||.+++.........++|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 344555433345789999999999999999999987655555566665
No 199
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.21 E-value=0.0016 Score=59.10 Aligned_cols=172 Identities=17% Similarity=0.191 Sum_probs=91.8
Q ss_pred CCceechhhHHH---HHHhhhcc----CCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHH
Q 042739 188 DGFIGINSRIEE---IKSLLCLE----SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRV 260 (505)
Q Consensus 188 ~~fvGR~~el~~---l~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 260 (505)
+..||-+..... |.+.|... .-.++.|..+|++|.|||.+|+.+++...-.+- .+. .
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l---~vk------a------- 184 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLL---LVK------A------- 184 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceE---Eec------h-------
Confidence 446776654433 33444321 123788999999999999999999988543221 111 0
Q ss_pred HHHHHHHHhCCCCccCCCCchHHHHh-ccCCCeEEEEEeCCC-------------CCHHHHHHHhcCcCCC--CCCCEEE
Q 042739 261 RDEVISQVLGENLKVGTLTIPQNIKK-GLQRMKVLIVLDDVH-------------DEFTQLESLAGVIDRF--SPGSRII 324 (505)
Q Consensus 261 ~~~ll~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~-------------~~~~~~~~l~~~l~~~--~~~~~il 324 (505)
.+++....+.. .. .+..+.+ .-+.-+|+++||.+. |-.+....|+..+... +.|...|
T Consensus 185 -t~liGehVGdg----ar-~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 185 -TELIGEHVGDG----AR-RIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred -HHHHHHHhhhH----HH-HHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 12222222111 00 1222222 223469999999982 1233445565555433 3455555
Q ss_pred EEeCcchhhcc-c--CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCC
Q 042739 325 ITTRDKRVLDK-C--EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGN 384 (505)
Q Consensus 325 iTsR~~~~~~~-~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 384 (505)
..|-+...+.. . .....++..--+.+|-.+++..++-.-..+. ..-.+.++.+++|.
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv---~~~~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV---DADLRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc---ccCHHHHHHHhCCC
Confidence 55554433322 1 2234577777788888888888772211111 11145666666665
No 200
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.20 E-value=0.00088 Score=60.40 Aligned_cols=107 Identities=13% Similarity=0.266 Sum_probs=58.3
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCC-CCccCCCCchHHHHhccCC
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGE-NLKVGTLTIPQNIKKGLQR 290 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~~~l~~~l~~ 290 (505)
.++.|+|+.|+||||++..++..+.......++.. ..+.... ... ....... ..........+.++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~-----e~~~E~~--~~~-~~~~i~q~~vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI-----EDPIEFV--HES-KRSLINQREVGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEE-----cCCcccc--ccC-ccceeeecccCCCccCHHHHHHHHhcC
Confidence 47899999999999999998887654433333332 1111000 000 0000000 0011111225667777877
Q ss_pred CeEEEEEeCCCCCHHHHHHHhcCcCCCCCCCEEEEEeCcc
Q 042739 291 MKVLIVLDDVHDEFTQLESLAGVIDRFSPGSRIIITTRDK 330 (505)
Q Consensus 291 ~~~LlVlDdv~~~~~~~~~l~~~l~~~~~~~~iliTsR~~ 330 (505)
.+=++++|++ .+.+......... ..|..++.|+-..
T Consensus 74 ~pd~ii~gEi-rd~e~~~~~l~~a---~~G~~v~~t~Ha~ 109 (198)
T cd01131 74 DPDVILVGEM-RDLETIRLALTAA---ETGHLVMSTLHTN 109 (198)
T ss_pred CcCEEEEcCC-CCHHHHHHHHHHH---HcCCEEEEEecCC
Confidence 8889999999 5555555444322 2344566666543
No 201
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.20 E-value=0.001 Score=60.70 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=33.6
Q ss_pred hhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 203 LLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 203 ~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
+|..+-....++.|+|++|+|||+|+.+++.........++|+.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34333345789999999999999999999987655555667776
No 202
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.19 E-value=0.0044 Score=63.90 Aligned_cols=49 Identities=31% Similarity=0.392 Sum_probs=38.6
Q ss_pred CCceechhhHHHHHHhhhc---cCCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 188 DGFIGINSRIEEIKSLLCL---ESHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..++--.+.++++..||.. +....+++.++||+|+||||.++.+++.+.
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455556788899999974 233367999999999999999999998863
No 203
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.19 E-value=0.00028 Score=58.10 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=21.4
Q ss_pred EEEEeccCcchHHHHHHHHHhhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
+|+|.|++|+||||+|+++++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999975
No 204
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.18 E-value=0.00036 Score=67.60 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=41.5
Q ss_pred CceechhhHHHHHHhhhcc----CCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 189 GFIGINSRIEEIKSLLCLE----SHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 189 ~fvGR~~el~~l~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
.++|.++.+.++.+++... ....++++|+|++|+||||||..++..+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 6999999999999988642 223688999999999999999999987644
No 205
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.18 E-value=0.014 Score=58.97 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=25.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.+.++.++|++|+||||++..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46799999999999999999999887654
No 206
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0024 Score=64.72 Aligned_cols=129 Identities=16% Similarity=0.225 Sum_probs=76.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHH-HhccC
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNI-KKGLQ 289 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l-~~~l~ 289 (505)
+.=|.+|||+|+|||-||+.+++...-.|- . +.. .+++....++. ...+..+ .+.-.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFi-----s----VKG--------PELlNkYVGES-----ErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFI-----S----VKG--------PELLNKYVGES-----ERAVRQVFQRARA 602 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceE-----e----ecC--------HHHHHHHhhhH-----HHHHHHHHHHhhc
Confidence 456889999999999999999998766552 2 111 12233222211 1112223 23334
Q ss_pred CCeEEEEEeCCC------------CCHHHHHHHhcCcCCC--CCCCEEEEEeCcchhh-----cccCCCcEEEcCCCCHh
Q 042739 290 RMKVLIVLDDVH------------DEFTQLESLAGVIDRF--SPGSRIIITTRDKRVL-----DKCEVSNIFEVKGLEHN 350 (505)
Q Consensus 290 ~~~~LlVlDdv~------------~~~~~~~~l~~~l~~~--~~~~~iliTsR~~~~~-----~~~~~~~~~~l~~L~~~ 350 (505)
..+|+|+||.+. ........|+..+... ..|..||-.|-.+++. ........+-++.-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 579999999992 0123445555555433 2455666555444322 12223457778888888
Q ss_pred HHHHHHHHhhc
Q 042739 351 KAFELFCRKAF 361 (505)
Q Consensus 351 ea~~L~~~~~~ 361 (505)
|-.+++.....
T Consensus 683 eR~~ILK~~tk 693 (802)
T KOG0733|consen 683 ERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHhc
Confidence 98899887774
No 207
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0049 Score=63.23 Aligned_cols=151 Identities=18% Similarity=0.204 Sum_probs=81.9
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCc-hHHHHhc
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTI-PQNIKKG 287 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~~l~~~ 287 (505)
..++-|.++||||+|||++|+.+++.....|-.+ .. .+++....++. +.. .+.+++.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---------kg--------pEL~sk~vGeS-----Er~ir~iF~kA 523 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---------KG--------PELFSKYVGES-----ERAIREVFRKA 523 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---------cC--------HHHHHHhcCch-----HHHHHHHHHHH
Confidence 4577899999999999999999999866554311 11 11222211110 001 1112222
Q ss_pred cCCCeEEEEEeCCCCC-------------HHHHHHHhcCcCCCCCCCEEEE---EeCcchhhcc----cCCCcEEEcCCC
Q 042739 288 LQRMKVLIVLDDVHDE-------------FTQLESLAGVIDRFSPGSRIII---TTRDKRVLDK----CEVSNIFEVKGL 347 (505)
Q Consensus 288 l~~~~~LlVlDdv~~~-------------~~~~~~l~~~l~~~~~~~~ili---TsR~~~~~~~----~~~~~~~~l~~L 347 (505)
-+-.+++|+||.+ |. ...+..|+..+........|+| |.|...+-.. ......+.++.-
T Consensus 524 R~~aP~IiFfDEi-Dsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplP 602 (693)
T KOG0730|consen 524 RQVAPCIIFFDEI-DALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLP 602 (693)
T ss_pred hhcCCeEEehhhH-HhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCc
Confidence 2335789999998 32 2234455555543333323333 3333322111 124567888888
Q ss_pred CHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCh
Q 042739 348 EHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNP 385 (505)
Q Consensus 348 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (505)
+.+.-.++|..++.+-..... -...+|++++.|.-
T Consensus 603 D~~aR~~Ilk~~~kkmp~~~~---vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 603 DLEARLEILKQCAKKMPFSED---VDLEELAQATEGYS 637 (693)
T ss_pred cHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHhccCC
Confidence 888888899888733222111 12456666666664
No 208
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0013 Score=63.84 Aligned_cols=97 Identities=19% Similarity=0.160 Sum_probs=56.4
Q ss_pred HHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCc--
Q 042739 197 IEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLK-- 274 (505)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-- 274 (505)
+.++.+.|..+--...++.|-|.+|||||||..+++.++..+. ...++. ...++.. .+--..++.-....
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs------GEES~~Q-iklRA~RL~~~~~~l~ 150 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS------GEESLQQ-IKLRADRLGLPTNNLY 150 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe------CCcCHHH-HHHHHHHhCCCccceE
Confidence 3455556643222357999999999999999999999988776 555554 1111111 12222233221111
Q ss_pred cCCCCchHHHHhccC-CCeEEEEEeCCC
Q 042739 275 VGTLTIPQNIKKGLQ-RMKVLIVLDDVH 301 (505)
Q Consensus 275 ~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 301 (505)
.......+.+.+.+. .++-++|+|-++
T Consensus 151 l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 151 LLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred EehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 111111444444444 578999999995
No 209
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.12 E-value=0.00047 Score=57.90 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=25.5
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhccc-ccc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRY-FQG 241 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~ 241 (505)
--++|+|++|+|||||+..++..++.. |..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv 36 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKV 36 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence 368899999999999999999987765 543
No 210
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.11 E-value=0.018 Score=60.08 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=38.6
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhh
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...+.++|....+.++.+.+..-......|.|+|..|+||+.||+.+...
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 45567999999888888777542233446889999999999999986543
No 211
>PRK06696 uridine kinase; Validated
Probab=97.10 E-value=0.00068 Score=62.46 Aligned_cols=46 Identities=24% Similarity=0.254 Sum_probs=36.6
Q ss_pred echhhHHHHHHhhhc-cCCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 192 GINSRIEEIKSLLCL-ESHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 192 GR~~el~~l~~~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
.|.+.+++|.+.+.. ..++..+|+|.|.+|+||||||..++..+..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 366677777776653 3445789999999999999999999988754
No 212
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.06 E-value=0.0008 Score=60.35 Aligned_cols=56 Identities=13% Similarity=0.237 Sum_probs=35.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVL 269 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 269 (505)
++++.++|+.|+||||.+.+++.++..+-..+..+. .. ....+..+.++.....+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis-~D--~~R~ga~eQL~~~a~~l~ 56 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS-AD--TYRIGAVEQLKTYAEILG 56 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-ES--TSSTHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec-CC--CCCccHHHHHHHHHHHhc
Confidence 468999999999999999999988765533334443 11 122344444555555443
No 213
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.05 E-value=0.0061 Score=61.24 Aligned_cols=44 Identities=27% Similarity=0.385 Sum_probs=35.6
Q ss_pred chhhHHHHHHhhh-----ccCCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 193 INSRIEEIKSLLC-----LESHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 193 R~~el~~l~~~L~-----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
-.+.+.++..||. ...-+.+++.|+||+|+||||-++.++..+.
T Consensus 87 HkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred hHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 4466788888887 4455678999999999999999998887643
No 214
>PHA00729 NTP-binding motif containing protein
Probab=97.04 E-value=0.002 Score=58.45 Aligned_cols=27 Identities=33% Similarity=0.286 Sum_probs=23.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
+...++|+|.+|+|||+||..+++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999998753
No 215
>PRK07667 uridine kinase; Provisional
Probab=97.03 E-value=0.0012 Score=59.22 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=32.1
Q ss_pred HHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 197 IEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
++.|.+.+....+...+|+|.|.+|+||||+|..+...+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34555666554555689999999999999999999987754
No 216
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.027 Score=59.71 Aligned_cols=179 Identities=17% Similarity=0.212 Sum_probs=98.7
Q ss_pred CCCCceechhhHHHH---HHhhhcc-------CCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccc
Q 042739 186 DLDGFIGINSRIEEI---KSLLCLE-------SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKL 255 (505)
Q Consensus 186 ~~~~fvGR~~el~~l---~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 255 (505)
....+.|-++..++| .+.|... ..-++=+.|+||+|.|||-||+.++-.. .+-|+.. +.
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~sv----SG-- 377 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSV----SG-- 377 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-----CCceeee----ch--
Confidence 345678877555544 4455421 1226778899999999999999999773 2333431 11
Q ss_pred cHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCC-----------------HHHHHHHhcCcCCCC
Q 042739 256 GVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDE-----------------FTQLESLAGVIDRFS 318 (505)
Q Consensus 256 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------------~~~~~~l~~~l~~~~ 318 (505)
. +++..+.+. ......+.....-.+.|++|.+|++ +. ...+..++..+..+.
T Consensus 378 --S----EFvE~~~g~----~asrvr~lf~~ar~~aP~iifidei-da~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 378 --S----EFVEMFVGV----GASRVRDLFPLARKNAPSIIFIDEI-DAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred --H----HHHHHhccc----chHHHHHHHHHhhccCCeEEEeccc-ccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 0 111111110 0000011222222356889999988 31 123444554444333
Q ss_pred CCC--EEEEEeCcchhhc-----ccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHH
Q 042739 319 PGS--RIIITTRDKRVLD-----KCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLAL 388 (505)
Q Consensus 319 ~~~--~iliTsR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 388 (505)
... -++-+|...+++. .......+.++.-+...-.++|..++...... .+..++.+ |+..+-|++-|.
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 322 3333444443322 12345678888888888889998887443332 33445555 999999998765
No 217
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.00 E-value=0.0016 Score=64.42 Aligned_cols=49 Identities=22% Similarity=0.233 Sum_probs=34.9
Q ss_pred HHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 198 EEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
.+|.+.|..+-....++.|.|++|+|||||+.+++.........++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3444555433334679999999999999999999988765544455554
No 218
>PRK14974 cell division protein FtsY; Provisional
Probab=96.97 E-value=0.024 Score=55.23 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=25.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
++.++.++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999876554
No 219
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.95 E-value=0.0042 Score=57.33 Aligned_cols=47 Identities=21% Similarity=0.177 Sum_probs=33.3
Q ss_pred HHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccc------cceEEEe
Q 042739 200 IKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYF------QGNCFMA 246 (505)
Q Consensus 200 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~ 246 (505)
|.++|..+-....++.|+|++|+|||+||.+++....... ..++|+.
T Consensus 8 lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 8 LDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 4444443334577999999999999999999988754443 3455655
No 220
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.94 E-value=0.0031 Score=59.07 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=39.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHH
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVIS 266 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~ 266 (505)
..+.++|.|.+|.|||+|+..+++..+.+|...+++..+.+ ....+.++.+.+..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGe--r~~Ev~e~~~~~~~ 122 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGE--RTREGNDLYHEMKE 122 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc--CcHHHHHHHHHHHh
Confidence 35678999999999999999999998877776666654432 23345555555543
No 221
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.93 E-value=0.0056 Score=55.07 Aligned_cols=40 Identities=23% Similarity=0.387 Sum_probs=29.4
Q ss_pred hHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 196 RIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 196 el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
..+.+...+. ++.+++.|.|++|.|||+++..+...+...
T Consensus 6 Q~~a~~~~l~---~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 6 QREAVRAILT---SGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHHH---CTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh---cCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 3444555554 334688899999999999999988776654
No 222
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.92 E-value=0.002 Score=59.90 Aligned_cols=48 Identities=15% Similarity=0.059 Sum_probs=34.2
Q ss_pred HHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 199 EIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
.|-+.|..+-+...++.|+|++|+|||+|+.+++.....+-..++|+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 344455444455789999999999999999999876544444555655
No 223
>PTZ00494 tuzin-like protein; Provisional
Probab=96.92 E-value=0.066 Score=52.95 Aligned_cols=165 Identities=10% Similarity=0.049 Sum_probs=92.9
Q ss_pred CCCCCceechhhHHHHHHhhhcc-CCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLE-SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDE 263 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 263 (505)
..+..+|.|+.|-..+.+.|.+. ...+++++++|.-|.|||+|++....+-. -..+|+. ++.. .+.++.
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~---~paV~VD-VRg~------EDtLrs 437 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG---VALVHVD-VGGT------EDTLRS 437 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC---CCeEEEE-ecCC------cchHHH
Confidence 56778999999999999999753 34589999999999999999998876532 2455554 2211 122334
Q ss_pred HHHHHhCCCCccCCCCc------hHHHHhccCCCeEEEEEeCCC-CCHH-HHHHHhcCcCCCCCCCEEEEEeCcchhh--
Q 042739 264 VISQVLGENLKVGTLTI------PQNIKKGLQRMKVLIVLDDVH-DEFT-QLESLAGVIDRFSPGSRIIITTRDKRVL-- 333 (505)
Q Consensus 264 ll~~~~~~~~~~~~~~~------~~~l~~~l~~~~~LlVlDdv~-~~~~-~~~~l~~~l~~~~~~~~iliTsR~~~~~-- 333 (505)
+.+.+.-........-. ....+....++.-+||+-==+ .+.. ....... +.....-|+|++----+.+.
T Consensus 438 VVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~va-LacDrRlCHvv~EVplESLT~~ 516 (664)
T PTZ00494 438 VVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVS-LVSDCQACHIVLAVPMKALTPL 516 (664)
T ss_pred HHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHH-HHccchhheeeeechHhhhchh
Confidence 44444433322211111 112222344556666665332 1111 1111111 11113456777643322111
Q ss_pred -cccCCCcEEEcCCCCHhHHHHHHHHhh
Q 042739 334 -DKCEVSNIFEVKGLEHNKAFELFCRKA 360 (505)
Q Consensus 334 -~~~~~~~~~~l~~L~~~ea~~L~~~~~ 360 (505)
..++.-..|-+++++.++|.++.....
T Consensus 517 n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 517 NVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hccCccceeEecCCcCHHHHHHHHhccc
Confidence 112233468999999999998886655
No 224
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.91 E-value=0.0028 Score=62.33 Aligned_cols=92 Identities=13% Similarity=0.289 Sum_probs=53.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhC-CCCccCCCCchHHHHhccC
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLG-ENLKVGTLTIPQNIKKGLQ 289 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~~~l~~~l~ 289 (505)
...+.|+|+.|+||||++..+...+.......++.. .++.... ... ...... ...+.........++..++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti-----Edp~E~~--~~~-~~~~i~q~evg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI-----EDPIEYV--HRN-KRSLINQREVGLDTLSFANALRAALR 193 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE-----cCChhhh--ccC-ccceEEccccCCCCcCHHHHHHHhhc
Confidence 468999999999999999998887765444444432 1111110 000 000000 0111111222667888888
Q ss_pred CCeEEEEEeCCCCCHHHHHHHh
Q 042739 290 RMKVLIVLDDVHDEFTQLESLA 311 (505)
Q Consensus 290 ~~~~LlVlDdv~~~~~~~~~l~ 311 (505)
..+=+|++|.+ .+.+......
T Consensus 194 ~~pd~i~vgEi-rd~~~~~~~l 214 (343)
T TIGR01420 194 EDPDVILIGEM-RDLETVELAL 214 (343)
T ss_pred cCCCEEEEeCC-CCHHHHHHHH
Confidence 89999999999 5555555433
No 225
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.0071 Score=59.29 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
++++++|+|++|+||||++..++..+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 35799999999999999999999876544
No 226
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.91 E-value=0.0061 Score=65.18 Aligned_cols=128 Identities=18% Similarity=0.206 Sum_probs=67.8
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCC
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRM 291 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~ 291 (505)
+-+.|+|++|+|||++|+.++......|- .+. .. .+. ....+. ........+.......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~---~is-~~---------~~~----~~~~g~----~~~~~~~~f~~a~~~~ 244 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFF---TIS-GS---------DFV----EMFVGV----GASRVRDMFEQAKKAA 244 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEE---EEe-hH---------HhH----Hhhhcc----cHHHHHHHHHHHHhcC
Confidence 44889999999999999999887644321 111 10 000 000000 0000011222223346
Q ss_pred eEEEEEeCCCCCH----------------HHHHHHhcCcCCC--CCCCEEEEEeCcchhhcc-----cCCCcEEEcCCCC
Q 042739 292 KVLIVLDDVHDEF----------------TQLESLAGVIDRF--SPGSRIIITTRDKRVLDK-----CEVSNIFEVKGLE 348 (505)
Q Consensus 292 ~~LlVlDdv~~~~----------------~~~~~l~~~l~~~--~~~~~iliTsR~~~~~~~-----~~~~~~~~l~~L~ 348 (505)
+++|+||++ |.. ..+..++..+... ..+.-+|.||.....+.. ......+.++..+
T Consensus 245 P~IifIDEi-D~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 245 PCIIFIDEI-DAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CcEEEehhH-hhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 899999999 322 1222333223222 224445556655432211 1234678899889
Q ss_pred HhHHHHHHHHhhc
Q 042739 349 HNKAFELFCRKAF 361 (505)
Q Consensus 349 ~~ea~~L~~~~~~ 361 (505)
.++-.+++..+..
T Consensus 324 ~~~R~~Il~~~~~ 336 (644)
T PRK10733 324 VRGREQILKVHMR 336 (644)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888877763
No 227
>PRK07261 topology modulation protein; Provisional
Probab=96.91 E-value=0.003 Score=55.42 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.6
Q ss_pred EEEEeccCcchHHHHHHHHHhhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.|+|+|++|+||||||++++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 228
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.88 E-value=0.0024 Score=56.81 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=21.0
Q ss_pred EEEEeccCcchHHHHHHHHHhhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
+|.|+|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999875
No 229
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.88 E-value=0.0069 Score=55.61 Aligned_cols=184 Identities=14% Similarity=0.156 Sum_probs=102.2
Q ss_pred CCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcc------cccceEEEeeccc------ccc--
Q 042739 188 DGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISR------YFQGNCFMANVRE------ESN-- 253 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~~~~~------~~~-- 253 (505)
+.+.++++.-..|..+.. .++.+...++||+|.||-|.+..+.+++-. +-+..-|...... .+.
T Consensus 13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 346777777777777664 234678889999999999998888876422 1112222221110 000
Q ss_pred ---------cccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeE-EEEEeCCC-CCHHHHHHHhcCcCCCCCCCE
Q 042739 254 ---------KLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKV-LIVLDDVH-DEFTQLESLAGVIDRFSPGSR 322 (505)
Q Consensus 254 ---------~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~ 322 (505)
...-.-+.++++........ +.. ...+++ ++|+-.++ -+.+....+.......+..++
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~q----------ie~-~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~R 159 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQ----------IET-QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCR 159 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcc----------hhh-ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCce
Confidence 01111223333333322111 000 011222 56666662 233444555555555567888
Q ss_pred EEEEeCcch-h-hcccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChH
Q 042739 323 IIITTRDKR-V-LDKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPL 386 (505)
Q Consensus 323 iliTsR~~~-~-~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 386 (505)
+|+..-+.. + .+--...-.++++..+++|....++...-...... ..+++.+|+++++|+-.
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l--p~~~l~rIa~kS~~nLR 223 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL--PKELLKRIAEKSNRNLR 223 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC--cHHHHHHHHHHhcccHH
Confidence 887543321 1 11112234689999999999999988874433322 26889999999999953
No 230
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.87 E-value=0.033 Score=57.63 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=38.8
Q ss_pred CCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 188 DGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..++|+...+..+.+.+.........|.|+|.+|+|||++|+.+....
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 458999999988888776444445678899999999999998887753
No 231
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.86 E-value=0.04 Score=59.29 Aligned_cols=50 Identities=14% Similarity=0.204 Sum_probs=39.4
Q ss_pred CCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 186 DLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..+.++|....+.++.+...........|.|+|.+|+||+++|+.+.+.-
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 34568999999888888776433344568899999999999999987754
No 232
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.86 E-value=0.0062 Score=52.19 Aligned_cols=117 Identities=14% Similarity=0.169 Sum_probs=58.7
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHH----hCCCCcc--CCCCc-----
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQV----LGENLKV--GTLTI----- 280 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~~~~~--~~~~~----- 280 (505)
..|-|++..|.||||+|...+.+...+-..+.++--+... ...+-...+..+ ..+ .+..... .+...
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 3678888889999999999998765554444443322211 122223332222 000 0000000 00000
Q ss_pred ---hHHHHhccC-CCeEEEEEeCCC----CCHHHHHHHhcCcCCCCCCCEEEEEeCcc
Q 042739 281 ---PQNIKKGLQ-RMKVLIVLDDVH----DEFTQLESLAGVIDRFSPGSRIIITTRDK 330 (505)
Q Consensus 281 ---~~~l~~~l~-~~~~LlVlDdv~----~~~~~~~~l~~~l~~~~~~~~iliTsR~~ 330 (505)
....++.+. +.-=|||||++- ...-..+.+...+.....+..+|+|.|+.
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 122223333 344599999982 11112233333344446788999999986
No 233
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.86 E-value=0.0015 Score=57.08 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=19.4
Q ss_pred EEEeccCcchHHHHHHHHHhh
Q 042739 214 VGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~ 234 (505)
+.|.|.+|+|||++|.+++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~ 22 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999999876
No 234
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.013 Score=57.68 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=24.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
...+++++|+.|+||||++..++......
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~ 164 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMR 164 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999999876433
No 235
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.81 E-value=0.0044 Score=57.59 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=32.4
Q ss_pred HHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc------ccceEEEe
Q 042739 200 IKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY------FQGNCFMA 246 (505)
Q Consensus 200 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 246 (505)
|...|..+-....++.|+|++|+|||+||.+++...... ...++|+.
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 334444333457899999999999999999998654322 14556665
No 236
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.80 E-value=0.0041 Score=64.43 Aligned_cols=28 Identities=36% Similarity=0.501 Sum_probs=24.6
Q ss_pred CCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 208 SHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 208 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.+..+++.++|++|+||||||.-++++.
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa 350 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA 350 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc
Confidence 3457899999999999999999999873
No 237
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0091 Score=62.15 Aligned_cols=152 Identities=18% Similarity=0.171 Sum_probs=82.2
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCc-hHHHHhc
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTI-PQNIKKG 287 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~~l~~~ 287 (505)
...+.+.++|++|.|||.||+.++......|-....- .++....++ .... ...+...
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-----------------~l~sk~vGe-----sek~ir~~F~~A 331 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-----------------ELLSKWVGE-----SEKNIRELFEKA 331 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-----------------HHhccccch-----HHHHHHHHHHHH
Confidence 3456899999999999999999999765544311110 111111100 0001 2223333
Q ss_pred cCCCeEEEEEeCCC-------CC-----HHHHHHHhcCcCCCC--CCCEEEEEeCcchhhcc-----cCCCcEEEcCCCC
Q 042739 288 LQRMKVLIVLDDVH-------DE-----FTQLESLAGVIDRFS--PGSRIIITTRDKRVLDK-----CEVSNIFEVKGLE 348 (505)
Q Consensus 288 l~~~~~LlVlDdv~-------~~-----~~~~~~l~~~l~~~~--~~~~iliTsR~~~~~~~-----~~~~~~~~l~~L~ 348 (505)
.+..+++|++|++. .+ ......++..+.... .+..||-||-....... ......+.+++-+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd 411 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPD 411 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCC
Confidence 35679999999993 01 134444544443222 23334444443322221 1235578999999
Q ss_pred HhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcC
Q 042739 349 HNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADG 383 (505)
Q Consensus 349 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G 383 (505)
.++..+.|..+....... -...-..+.+++.+.|
T Consensus 412 ~~~r~~i~~~~~~~~~~~-~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 412 LEERLEIFKIHLRDKKPP-LAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHHHHhcccCCc-chhhhhHHHHHHHhcC
Confidence 999999998888322221 1112234455555555
No 238
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.77 E-value=0.0017 Score=55.33 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=28.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
+.+|.|+|.+|+||||||..+.+++........++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 468999999999999999999999877655555553
No 239
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.73 E-value=0.0069 Score=57.16 Aligned_cols=102 Identities=20% Similarity=0.198 Sum_probs=56.8
Q ss_pred hHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCcc
Q 042739 196 RIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKV 275 (505)
Q Consensus 196 el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 275 (505)
.++.|..++. .....+.|.|+.|.||||++..+...+.......+.+.+..+...+ + ..+.. ....
T Consensus 68 ~~~~l~~~~~---~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~-~--------~~q~~--v~~~ 133 (264)
T cd01129 68 NLEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP-G--------INQVQ--VNEK 133 (264)
T ss_pred HHHHHHHHHh---cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC-C--------ceEEE--eCCc
Confidence 4444555553 2345899999999999999999887764422222223211111100 0 00000 0000
Q ss_pred CCCCchHHHHhccCCCeEEEEEeCCCCCHHHHHHHhc
Q 042739 276 GTLTIPQNIKKGLQRMKVLIVLDDVHDEFTQLESLAG 312 (505)
Q Consensus 276 ~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~l~~ 312 (505)
........++..++..+-.|+++++ .+.+....+..
T Consensus 134 ~~~~~~~~l~~~lR~~PD~i~vgEi-R~~e~a~~~~~ 169 (264)
T cd01129 134 AGLTFARGLRAILRQDPDIIMVGEI-RDAETAEIAVQ 169 (264)
T ss_pred CCcCHHHHHHHHhccCCCEEEeccC-CCHHHHHHHHH
Confidence 1112267778888888999999999 56555554433
No 240
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.71 E-value=0.0032 Score=62.00 Aligned_cols=103 Identities=15% Similarity=0.273 Sum_probs=56.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccC
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQ 289 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~ 289 (505)
.++=+-|+|+.|.|||-|+..+++.+...-...+.+. .+..-+.+-+..+. ...+....+.+.+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh---------~Fm~~vh~~l~~~~------~~~~~l~~va~~l~ 125 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH---------EFMLDVHSRLHQLR------GQDDPLPQVADELA 125 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc---------HHHHHHHHHHHHHh------CCCccHHHHHHHHH
Confidence 4677889999999999999999987643211111111 11111122222222 12222455666667
Q ss_pred CCeEEEEEeCCC-CCHH---HHHHHhcCcCCCCCCCEEEEEeCcc
Q 042739 290 RMKVLIVLDDVH-DEFT---QLESLAGVIDRFSPGSRIIITTRDK 330 (505)
Q Consensus 290 ~~~~LlVlDdv~-~~~~---~~~~l~~~l~~~~~~~~iliTsR~~ 330 (505)
++..||.||.++ .+.. .+..+...+- ..|. +||+|.|.
T Consensus 126 ~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 126 KESRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNR 167 (362)
T ss_pred hcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCC
Confidence 777899999996 2222 2333433332 3455 55555544
No 241
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.69 E-value=0.0042 Score=63.24 Aligned_cols=49 Identities=22% Similarity=0.180 Sum_probs=35.0
Q ss_pred HHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 198 EEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
..|.+.|..+-....++.|.|++|+|||||+.+++.........++|+.
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4555556433344679999999999999999999988764333455554
No 242
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.034 Score=54.94 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=79.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCC
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQR 290 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~ 290 (505)
.|=-.++||||.|||++..++++.+.- -++-..+..+..... ++.+|... .
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~y----dIydLeLt~v~~n~d----Lr~LL~~t---------------------~ 285 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLNY----DIYDLELTEVKLDSD----LRHLLLAT---------------------P 285 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcCC----ceEEeeeccccCcHH----HHHHHHhC---------------------C
Confidence 456789999999999999999987642 222222222222221 22332221 2
Q ss_pred CeEEEEEeCCCCCHH-------------------HHHHHhcCcC---CCCCCCEEEE-EeCcchhh-----cccCCCcEE
Q 042739 291 MKVLIVLDDVHDEFT-------------------QLESLAGVID---RFSPGSRIII-TTRDKRVL-----DKCEVSNIF 342 (505)
Q Consensus 291 ~~~LlVlDdv~~~~~-------------------~~~~l~~~l~---~~~~~~~ili-TsR~~~~~-----~~~~~~~~~ 342 (505)
.+-+|||.|+....+ .+.-|+..+. ..+.+-|||| ||-..+-+ ....-...+
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 355777777731100 1112222222 1122335554 66544221 111223467
Q ss_pred EcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 042739 343 EVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSL 395 (505)
Q Consensus 343 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 395 (505)
.++-=+.+.-..|+.++..... + ..+..+|.+...|.-+.=..++..|
T Consensus 366 ~mgyCtf~~fK~La~nYL~~~~-~----h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLGIEE-D----HRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EcCCCCHHHHHHHHHHhcCCCC-C----cchhHHHHHHhhcCccCHHHHHHHH
Confidence 8888899999999988883322 1 2345555555555544445555544
No 243
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.68 E-value=0.006 Score=53.56 Aligned_cols=28 Identities=25% Similarity=0.359 Sum_probs=24.1
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYF 239 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (505)
+.+.++|.+|+||||+|++++..+++.-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 4688999999999999999999876543
No 244
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.03 Score=54.43 Aligned_cols=58 Identities=16% Similarity=-0.005 Sum_probs=38.8
Q ss_pred CCcEEEcCCCCHhHHHHHHHHhhcCCCCC-ChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 042739 338 VSNIFEVKGLEHNKAFELFCRKAFGQNNR-SHDLYQLSQRVVCYADGNPLALEVLGSSL 395 (505)
Q Consensus 338 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~~~~l 395 (505)
...++++++++.+|+.+++..+....-.. ....++-.+++.-..+|||-.++.++.++
T Consensus 402 pf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 402 PFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 44578999999999999887665111000 00113456678888899998888777665
No 245
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.68 E-value=0.004 Score=63.45 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=36.1
Q ss_pred HHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 197 IEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
+..|.+.|..+-....++.|.|.+|+|||||+.+++.........++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34555666444445779999999999999999999987655433455554
No 246
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.66 E-value=0.0021 Score=65.69 Aligned_cols=51 Identities=25% Similarity=0.365 Sum_probs=42.0
Q ss_pred CCCceechhhHHHHHHhhh----ccCCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 187 LDGFIGINSRIEEIKSLLC----LESHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 187 ~~~fvGR~~el~~l~~~L~----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
...++|.++.+++|.+.|. .-....+++.++||+|+|||+||..++.-+..
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3468999999999999883 22345689999999999999999999986544
No 247
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.6 Score=44.83 Aligned_cols=167 Identities=11% Similarity=0.087 Sum_probs=92.5
Q ss_pred HHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcc---------ccc-ceEEEeecccccccccHHHHHHHHHH
Q 042739 197 IEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISR---------YFQ-GNCFMANVREESNKLGVIRVRDEVIS 266 (505)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~---------~f~-~~~~~~~~~~~~~~~~~~~~~~~ll~ 266 (505)
++.+.+.+..+ .-.++..++|+.|+||+++|..++..+-. ..+ ...++. .. ...... +-.+++..
T Consensus 5 ~~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~--g~~i~v-d~Ir~l~~ 79 (299)
T PRK07132 5 IKFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IF--DKDLSK-SEFLSAIN 79 (299)
T ss_pred HHHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cC--CCcCCH-HHHHHHHH
Confidence 34455555421 23678889999999999999999988611 111 111111 00 011111 11222222
Q ss_pred HHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-hhhcc-cCCCcEEE
Q 042739 267 QVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK-RVLDK-CEVSNIFE 343 (505)
Q Consensus 267 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~-~~~~~~~~ 343 (505)
.+.-.. .-.+.+-++|+|+++ .+......++..+...+..+.+|++|.+. .+.+. ......++
T Consensus 80 ~~~~~~--------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 80 KLYFSS--------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred HhccCC--------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 211100 011356688999985 34455667777777767777777766443 33333 34467899
Q ss_pred cCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHH
Q 042739 344 VKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEV 390 (505)
Q Consensus 344 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 390 (505)
+.+++.++..+.+.... .+ .+.+..++..++|.=.|+..
T Consensus 146 f~~l~~~~l~~~l~~~~-----~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 146 VKEPDQQKILAKLLSKN-----KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCCHHHHHHHHHHcC-----CC---hhHHHHHHHHcCCHHHHHHH
Confidence 99999999988876531 11 23355555566652234443
No 248
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.66 E-value=0.0039 Score=57.05 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.7
Q ss_pred EEEEeccCcchHHHHHHHHHhhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 249
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=96.60 E-value=0.0068 Score=49.61 Aligned_cols=61 Identities=21% Similarity=0.346 Sum_probs=52.9
Q ss_pred cEEEcccccccccchHHHHHHHHHhcCcceeeccccccCCCchhHHHHHHHhhcceEEEEecCC
Q 042739 17 EVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIETTDISIIIFSKG 80 (505)
Q Consensus 17 dvFisy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~ 80 (505)
.|||.|+ .|.. +++.+...|+..|+.+.+=.+....|..+.+.+.+.+.+|+-+|+++||+
T Consensus 1 kVFIvhg-~~~~--~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 1 KVFIVHG-RDLA--AAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CEEEEeC-CCHH--HHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 4899997 6655 99999999998898776655566899999999999999999999999994
No 250
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.60 E-value=0.0025 Score=55.75 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=21.0
Q ss_pred EEEEeccCcchHHHHHHHHHhhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.+.|.|.+|+|||++|..++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 68899999999999999998775
No 251
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.59 E-value=0.083 Score=54.92 Aligned_cols=49 Identities=27% Similarity=0.471 Sum_probs=39.7
Q ss_pred CCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 187 LDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 187 ~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...++|....+.++.+.+..-......|.|+|..|+||+.+|+.+.+.-
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S 259 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLS 259 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhc
Confidence 3458999999999988886433445678899999999999999997653
No 252
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.024 Score=56.92 Aligned_cols=46 Identities=28% Similarity=0.327 Sum_probs=33.9
Q ss_pred ceech---hhHHHHHHhhhccC-----CC--ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 190 FIGIN---SRIEEIKSLLCLES-----HD--ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 190 fvGR~---~el~~l~~~L~~~~-----~~--~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.-|-+ .|++++.+.|.... ++ ++=|.++||+|.|||-||+.++-+.
T Consensus 306 VkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 306 VKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 44554 56777777776321 11 6678999999999999999998764
No 253
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.59 E-value=0.0032 Score=52.17 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=30.9
Q ss_pred hhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 195 SRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 195 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
++..++-+.|...-....++.|.|+-|.|||||++.++..+.
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 344555555543324456899999999999999999998753
No 254
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.58 E-value=0.0026 Score=54.60 Aligned_cols=20 Identities=35% Similarity=0.358 Sum_probs=18.5
Q ss_pred EeccCcchHHHHHHHHHhhh
Q 042739 216 IWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 216 I~G~~GiGKTtLa~~~~~~~ 235 (505)
|.|+||+||||+|..++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999875
No 255
>PRK10867 signal recognition particle protein; Provisional
Probab=96.57 E-value=0.071 Score=53.76 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=25.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.+.++.++|++|+||||++..++..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36899999999999999999998876554
No 256
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.57 E-value=0.0042 Score=56.99 Aligned_cols=42 Identities=24% Similarity=0.403 Sum_probs=30.2
Q ss_pred HHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 197 IEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
-.++.+.+....++..+|+|+|+||+|||||..++...+...
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 344444444444567899999999999999999999887654
No 257
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.57 E-value=0.0079 Score=56.98 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=25.7
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
...+++.++|++|+||||++..++..+...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 346899999999999999999999877654
No 258
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.57 E-value=0.0026 Score=56.25 Aligned_cols=36 Identities=25% Similarity=0.532 Sum_probs=30.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEE
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFM 245 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (505)
.+.+|+++|++|+||||+|+.++..+...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 356999999999999999999999987666555555
No 259
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.56 E-value=0.0013 Score=52.85 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=21.7
Q ss_pred EEEeccCcchHHHHHHHHHhhhccc
Q 042739 214 VGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
|.|+|++|+|||+||..++..+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5699999999999999999876544
No 260
>PRK14527 adenylate kinase; Provisional
Probab=96.56 E-value=0.0033 Score=56.35 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...++.|.|++|+||||+|+.++.++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998775
No 261
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.54 E-value=0.0017 Score=53.83 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=20.5
Q ss_pred EEEeccCcchHHHHHHHHHhhh
Q 042739 214 VGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
|+|.|.+|+||||+|+++..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 262
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.53 E-value=0.056 Score=54.21 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=25.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.+.+|.++|++|+||||++..++..++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999999876543
No 263
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.49 E-value=0.026 Score=48.78 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=28.3
Q ss_pred echhhHHHHHHhhhccC-CCceEEEEeccCcchHHHHHHHHHhh
Q 042739 192 GINSRIEEIKSLLCLES-HDARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 192 GR~~el~~l~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
|.+..++.+.+.+.... .....++++|++|+|||||...+..+
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcC
Confidence 44444555555443111 22456779999999999999999764
No 264
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.47 E-value=0.011 Score=50.33 Aligned_cols=103 Identities=17% Similarity=0.246 Sum_probs=55.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCc-hHHHHhcc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTI-PQNIKKGL 288 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~~l~~~l 288 (505)
...+++|.|+.|.|||||++.++..... ..+.+++.......--.. ....+. .-.+...+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~~~~~------------------lS~G~~~rv~laral 85 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIGYFEQ------------------LSGGEKMRLALAKLL 85 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEEEEcc------------------CCHHHHHHHHHHHHH
Confidence 3568999999999999999998876432 233444431100000000 111111 22344455
Q ss_pred CCCeEEEEEeCCC--CCHHHHHHHhcCcCCCCCCCEEEEEeCcchhh
Q 042739 289 QRMKVLIVLDDVH--DEFTQLESLAGVIDRFSPGSRIIITTRDKRVL 333 (505)
Q Consensus 289 ~~~~~LlVlDdv~--~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~ 333 (505)
..++-++++|+-- -+......+...+... +..||++|.+....
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 5667799999873 2333333333333222 34677777765443
No 265
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.47 E-value=0.0026 Score=51.82 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEeccCcchHHHHHHHHHhhhcccccc
Q 042739 214 VGIWGMGGIGKTTIASVVFHQISRYFQG 241 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 241 (505)
|.|.|.+|+|||++|+.++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999998877754
No 266
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.47 E-value=0.0022 Score=57.64 Aligned_cols=26 Identities=38% Similarity=0.577 Sum_probs=23.4
Q ss_pred EEEEeccCcchHHHHHHHHHhhhccc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
+|+|.|++|+||||||+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 68999999999999999999987643
No 267
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.46 E-value=0.0041 Score=54.74 Aligned_cols=95 Identities=16% Similarity=0.177 Sum_probs=48.0
Q ss_pred EEEEeccCcchHHHHHHHHHhhhc-ccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCC-
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQIS-RYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQR- 290 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~- 290 (505)
.|.|.|++|.||||+|+.++.++. .+.+.+-|+... ......+....+..+.+ ..-.++.-....+..++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~--~~~~t~lg~~~k~~i~~----g~lv~d~i~~~~v~~rl~~~ 75 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAA--IAERTELGEEIKKYIDK----GELVPDEIVNGLVKERLDEA 75 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhh--hccCChHHHHHHHHHHc----CCccchHHHHHHHHHHHHhh
Confidence 477999999999999999999841 222222222111 11112222222222111 1111111113444444443
Q ss_pred --CeEEEEEeCCCCCHHHHHHHhcCc
Q 042739 291 --MKVLIVLDDVHDEFTQLESLAGVI 314 (505)
Q Consensus 291 --~~~LlVlDdv~~~~~~~~~l~~~l 314 (505)
.. .+|+|++--...+.+.+-..+
T Consensus 76 d~~~-~~I~dg~PR~~~qa~~l~r~l 100 (178)
T COG0563 76 DCKA-GFILDGFPRTLCQARALKRLL 100 (178)
T ss_pred cccC-eEEEeCCCCcHHHHHHHHHHH
Confidence 23 899999966666666665544
No 268
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.45 E-value=0.013 Score=55.99 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=25.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
..++++|+|++|+||||++..++..+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 36799999999999999999999876543
No 269
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.45 E-value=0.1 Score=49.51 Aligned_cols=127 Identities=11% Similarity=0.087 Sum_probs=70.7
Q ss_pred HHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc-------------ccceEEEeecccccccccHHHHHHHH
Q 042739 198 EEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY-------------FQGNCFMANVREESNKLGVIRVRDEV 264 (505)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-------------f~~~~~~~~~~~~~~~~~~~~~~~~l 264 (505)
+.|...+..+ .-.+...++|+.|+||+++|..++..+-.. ++...++.... ...
T Consensus 7 ~~L~~~i~~~-rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~--~~~---------- 73 (290)
T PRK05917 7 EALIQRVRDQ-KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG--KGR---------- 73 (290)
T ss_pred HHHHHHHHcC-CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC--CCC----------
Confidence 4555555422 236688899999999999999999875221 11111111000 000
Q ss_pred HHHHhCCCCccCCCCchHHHHhcc-----CCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-hhhcc-c
Q 042739 265 ISQVLGENLKVGTLTIPQNIKKGL-----QRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK-RVLDK-C 336 (505)
Q Consensus 265 l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~-~ 336 (505)
.-..+....+.+.+ .++.-++|+|+++ .+.+....++..+...+.++.+|++|.+. .+++. .
T Consensus 74 ----------~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~ 143 (290)
T PRK05917 74 ----------LHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIR 143 (290)
T ss_pred ----------cCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHH
Confidence 00011122222222 2445588999996 46667778888777766777777666664 33333 2
Q ss_pred CCCcEEEcCCC
Q 042739 337 EVSNIFEVKGL 347 (505)
Q Consensus 337 ~~~~~~~l~~L 347 (505)
.....+.+.++
T Consensus 144 SRcq~~~~~~~ 154 (290)
T PRK05917 144 SRSLSIHIPME 154 (290)
T ss_pred hcceEEEccch
Confidence 33456667665
No 270
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.44 E-value=0.022 Score=54.18 Aligned_cols=37 Identities=14% Similarity=0.042 Sum_probs=28.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc-ccceEEEe
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY-FQGNCFMA 246 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 246 (505)
...++.|.|++|+|||+|+.+++...... ...++|+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 45689999999999999999999886544 34455554
No 271
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.042 Score=57.13 Aligned_cols=173 Identities=15% Similarity=0.143 Sum_probs=91.2
Q ss_pred ceechhhHHHHHHhhhccC-----------CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHH
Q 042739 190 FIGINSRIEEIKSLLCLES-----------HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVI 258 (505)
Q Consensus 190 fvGR~~el~~l~~~L~~~~-----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 258 (505)
.-|..+..+.|++.+.-.. .-..-|.++|++|+|||-||.+++....-+ |+. +..+
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-----fis----vKGP---- 735 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-----FIS----VKGP---- 735 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-----EEE----ecCH----
Confidence 4455555555555554221 113457899999999999999998864322 233 1111
Q ss_pred HHHHHHHHHHhCCCCccCCCCch-HHHHhccCCCeEEEEEeCCC--------C----CHHHHHHHhcCcCCC--CCCCEE
Q 042739 259 RVRDEVISQVLGENLKVGTLTIP-QNIKKGLQRMKVLIVLDDVH--------D----EFTQLESLAGVIDRF--SPGSRI 323 (505)
Q Consensus 259 ~~~~~ll~~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~--------~----~~~~~~~l~~~l~~~--~~~~~i 323 (505)
+++....+. .++.. ..+.+.-..++|+|+||.+. | .......++..+... -.|..|
T Consensus 736 ----ElL~KyIGa-----SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i 806 (952)
T KOG0735|consen 736 ----ELLSKYIGA-----SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYI 806 (952)
T ss_pred ----HHHHHHhcc-----cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEE
Confidence 233332221 11123 33334444689999999992 1 233455555555421 235555
Q ss_pred EE-EeCcchhhcc----cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHH
Q 042739 324 II-TTRDKRVLDK----CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLA 387 (505)
Q Consensus 324 li-TsR~~~~~~~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 387 (505)
+. |||...+-+. ..-.+.+.-+.-+..|-.+++......... ...-..+.++.+++|.--|
T Consensus 807 ~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~---~~~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 807 LAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK---DTDVDLECLAQKTDGFTGA 872 (952)
T ss_pred EEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC---ccccchHHHhhhcCCCchh
Confidence 54 5554422111 122334445555666777777665521111 1122356788888888654
No 272
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.43 E-value=0.0023 Score=54.25 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.3
Q ss_pred EEEEeccCcchHHHHHHHHHhhhc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
+|.++|++|+||||+|+++.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987654
No 273
>PRK14528 adenylate kinase; Provisional
Probab=96.43 E-value=0.0064 Score=54.21 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.2
Q ss_pred eEEEEeccCcchHHHHHHHHHhhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
+.+.|.|++|+||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998775
No 274
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.41 E-value=0.016 Score=56.59 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=27.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
+.++++|+|+.|+||||++..++..+..+...+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4789999999999999999999987644333334443
No 275
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.41 E-value=0.0033 Score=59.30 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=29.5
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhcccccceEE
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCF 244 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 244 (505)
.+..++.|.|.+|+|||||+..+...+.......+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 468899999999999999999999988766543333
No 276
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=96.39 E-value=0.12 Score=53.12 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=37.1
Q ss_pred CCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 188 DGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..++|....+..+...+..-......+.|+|..|+||+++|+.+...-
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s 186 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLS 186 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 458999998888888776433334456799999999999999887653
No 277
>PRK08233 hypothetical protein; Provisional
Probab=96.39 E-value=0.0028 Score=56.25 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=23.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..+|+|.|++|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 278
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.38 E-value=0.0027 Score=46.32 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEeccCcchHHHHHHHHHhhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
+++|.|.+|+||||+++.+...+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 279
>PRK06762 hypothetical protein; Provisional
Probab=96.38 E-value=0.0029 Score=55.26 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
+.+++|+|++|+||||+|+.++..+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999886
No 280
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.37 E-value=0.0047 Score=57.99 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=22.0
Q ss_pred EEEEeccCcchHHHHHHHHHhhhcc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
+|.++|++|+||||+|++++..+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999988654
No 281
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.37 E-value=0.0088 Score=56.27 Aligned_cols=45 Identities=24% Similarity=0.225 Sum_probs=35.6
Q ss_pred HhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 202 SLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 202 ~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
.+|..+-+..+++=|+|+.|.|||+||.+++-.........+|+.
T Consensus 51 ~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 51 EALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred HHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 344334455789999999999999999999987766666778887
No 282
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.04 Score=54.77 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.++++.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999998764
No 283
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.36 E-value=0.0055 Score=57.81 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=21.3
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
+.|.|+|.||+||||+|+++...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 478999999999999999999887653
No 284
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.36 E-value=0.0091 Score=52.83 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...+++|.|+.|.|||||++.++-...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 356899999999999999999987643
No 285
>PRK15115 response regulator GlrR; Provisional
Probab=96.33 E-value=0.2 Score=51.47 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=34.9
Q ss_pred CCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 188 DGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..++|....+..+.+....-......+.|.|.+|+|||+||+.+...-
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 357888887777666554322334567899999999999999887654
No 286
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.30 E-value=0.017 Score=51.21 Aligned_cols=122 Identities=16% Similarity=0.232 Sum_probs=62.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccc--ccc---HHHHHHHHHHHHhCCCC---c---cCCC
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESN--KLG---VIRVRDEVISQVLGENL---K---VGTL 278 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~--~~~---~~~~~~~ll~~~~~~~~---~---~~~~ 278 (505)
...+++|.|+.|.|||||++.++-.... ..+.+++.... ... ... ......+++..+.-... . ....
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~-~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKD-LASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEE-CCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 3568999999999999999999876533 23444443111 110 000 11111223333221110 1 1111
Q ss_pred Cc-hHHHHhccCCCeEEEEEeCCC--CCHHHHHHHhcCcCCCC-C-CCEEEEEeCcchhh
Q 042739 279 TI-PQNIKKGLQRMKVLIVLDDVH--DEFTQLESLAGVIDRFS-P-GSRIIITTRDKRVL 333 (505)
Q Consensus 279 ~~-~~~l~~~l~~~~~LlVlDdv~--~~~~~~~~l~~~l~~~~-~-~~~iliTsR~~~~~ 333 (505)
+. .-.+.+.+...+-++++|+-- -+....+.+...+.... . +..+|++|.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 11 233455566778899999973 23333333333332222 2 56788888776543
No 287
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.04 Score=57.76 Aligned_cols=49 Identities=24% Similarity=0.247 Sum_probs=33.6
Q ss_pred CceechhhHHHHHHhhhc----------cCCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 189 GFIGINSRIEEIKSLLCL----------ESHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 189 ~fvGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
..=|-++-..+|.+-+.. +-....=|.++|++|.|||-||++++.+..=
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL 731 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL 731 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee
Confidence 345666666666664432 1122335779999999999999999987543
No 288
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.27 E-value=0.0054 Score=57.80 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=30.0
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
....++.|.|++|+|||+||.+++......-..++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34679999999999999999999887544445566665
No 289
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.25 E-value=0.007 Score=56.30 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=35.3
Q ss_pred HHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 199 EIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
.|-++|..+-....++.|.|++|+|||+||.+++.........++|+.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 444555444455789999999999999999999877544455566665
No 290
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.24 E-value=0.0042 Score=56.60 Aligned_cols=27 Identities=41% Similarity=0.704 Sum_probs=24.4
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.+..+|+|.|++|+|||||+..++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 291
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.24 E-value=0.27 Score=46.85 Aligned_cols=68 Identities=19% Similarity=0.271 Sum_probs=45.2
Q ss_pred CCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-hhhccc-CCCcEEEcCCCCHhHHHHHHHH
Q 042739 290 RMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK-RVLDKC-EVSNIFEVKGLEHNKAFELFCR 358 (505)
Q Consensus 290 ~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~ 358 (505)
+++-++|||+++ .+......|+..+...+.++.+|++|.+. .+++.. .....+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 455689999996 45667778888887766667777766554 343333 2345677866 66766666643
No 292
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.22 E-value=0.0069 Score=56.47 Aligned_cols=43 Identities=23% Similarity=0.374 Sum_probs=32.9
Q ss_pred HHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccccc
Q 042739 198 EEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQ 240 (505)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 240 (505)
.+|...+....++..+|+|+|.||+|||||...+..++..+-.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 3444444444566889999999999999999999998765543
No 293
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.22 E-value=0.0093 Score=54.36 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=20.0
Q ss_pred EEEeccCcchHHHHHHHHHhhh
Q 042739 214 VGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
|.|.|++|+||||+|..++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998764
No 294
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.22 E-value=0.03 Score=53.67 Aligned_cols=43 Identities=28% Similarity=0.281 Sum_probs=32.2
Q ss_pred CceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHh
Q 042739 189 GFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFH 233 (505)
Q Consensus 189 ~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 233 (505)
..-+|..+..--.++|. .+....|.+.|.+|.|||-||....-
T Consensus 225 Gi~prn~eQ~~ALdlLl--d~dI~lV~L~G~AGtGKTlLALaAgl 267 (436)
T COG1875 225 GIRPRNAEQRVALDLLL--DDDIDLVSLGGKAGTGKTLLALAAGL 267 (436)
T ss_pred ccCcccHHHHHHHHHhc--CCCCCeEEeeccCCccHhHHHHHHHH
Confidence 45567766665555554 35688999999999999999877663
No 295
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.22 E-value=0.013 Score=54.08 Aligned_cols=123 Identities=18% Similarity=0.175 Sum_probs=67.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecc--cccccccHHHHHHHHHHHHhCCCC-------ccCCCCc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVR--EESNKLGVIRVRDEVISQVLGENL-------KVGTLTI 280 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~~-------~~~~~~~ 280 (505)
...+++|+|.+|+|||||++.+..-..... +.+++..-. ... .....+...+++...+.... .....+.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 356999999999999999999988665432 333333110 011 22233445555555443221 2222222
Q ss_pred -hHHHHhccCCCeEEEEEeCCCC--C---HHHHHHHhcCcCCCCCCCEEEEEeCcchhhcc
Q 042739 281 -PQNIKKGLQRMKVLIVLDDVHD--E---FTQLESLAGVIDRFSPGSRIIITTRDKRVLDK 335 (505)
Q Consensus 281 -~~~l~~~l~~~~~LlVlDdv~~--~---~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~ 335 (505)
.-.+.+.+.-++-++|.|..-. + ..+.-.++..+.. ..+...+..|-+-.+...
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhh
Confidence 4456677778899999998731 1 1222233332221 235556666665544443
No 296
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.22 E-value=0.0088 Score=55.01 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.9
Q ss_pred EEEEeccCcchHHHHHHHHHhhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.|+|.|++|+||||+|+.+++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999875
No 297
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.21 E-value=0.0072 Score=55.92 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=26.7
Q ss_pred CCCceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 208 SHDARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 208 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.+...+++|.|++|.|||||++.++..+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3557899999999999999999999877654
No 298
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=96.21 E-value=0.092 Score=54.21 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=37.3
Q ss_pred CCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 188 DGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..++|......++.+.+.........+.|.|..|+||+++|+.+.....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~ 182 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSP 182 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCC
Confidence 3588988888888777754334455678999999999999988876543
No 299
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.19 E-value=0.0096 Score=51.06 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=27.3
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhccccc
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRYFQ 240 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 240 (505)
....++.++|.+|.||||+|..+...+.....
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGY 52 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence 34679999999999999999999998766543
No 300
>PTZ00301 uridine kinase; Provisional
Probab=96.19 E-value=0.0044 Score=56.19 Aligned_cols=26 Identities=23% Similarity=0.603 Sum_probs=23.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..+|+|.|++|+||||||..+..++.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999987764
No 301
>PRK14532 adenylate kinase; Provisional
Probab=96.19 E-value=0.011 Score=52.89 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=20.1
Q ss_pred EEEeccCcchHHHHHHHHHhhh
Q 042739 214 VGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
|.|.|++|+||||+|+.++.++
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7789999999999999998765
No 302
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.19 E-value=0.01 Score=58.49 Aligned_cols=95 Identities=14% Similarity=0.183 Sum_probs=51.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccc---eEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQG---NCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKG 287 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~ 287 (505)
...|.|+|+.|+||||++..++..+....+. .+.+.+..+ ...... ......................++..
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE----~~~~~~-~~~~~~v~Q~~v~~~~~~~~~~l~~a 208 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE----FVYDEI-ETISASVCQSEIPRHLNNFAAGVRNA 208 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce----Eecccc-ccccceeeeeeccccccCHHHHHHHH
Confidence 4699999999999999999998876443221 222221111 000000 00000000000000111226677888
Q ss_pred cCCCeEEEEEeCCCCCHHHHHHHh
Q 042739 288 LQRMKVLIVLDDVHDEFTQLESLA 311 (505)
Q Consensus 288 l~~~~~LlVlDdv~~~~~~~~~l~ 311 (505)
|+..+-.+++..+ .+.+.....+
T Consensus 209 LR~~Pd~i~vGEi-Rd~et~~~al 231 (358)
T TIGR02524 209 LRRKPHAILVGEA-RDAETISAAL 231 (358)
T ss_pred hccCCCEEeeeee-CCHHHHHHHH
Confidence 8889999999999 5555555433
No 303
>PRK14531 adenylate kinase; Provisional
Probab=96.18 E-value=0.0091 Score=53.09 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=21.1
Q ss_pred EEEEeccCcchHHHHHHHHHhhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.|.|+|++|+||||+++.++..+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 304
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.17 E-value=0.0073 Score=57.10 Aligned_cols=44 Identities=23% Similarity=0.141 Sum_probs=35.7
Q ss_pred hhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 203 LLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 203 ~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
.|..+-+..+++.|+|.+|+|||+++.+++.........++|+.
T Consensus 15 ~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 15 ILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34333456789999999999999999999999877777777776
No 305
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=96.16 E-value=0.15 Score=52.58 Aligned_cols=48 Identities=19% Similarity=0.116 Sum_probs=36.1
Q ss_pred CCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 188 DGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..++|....+..+.+.+.........+.|.|..|+||+++|..+....
T Consensus 143 ~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s 190 (457)
T PRK11361 143 GHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNS 190 (457)
T ss_pred cceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhC
Confidence 347888877777777665433444578899999999999999887643
No 306
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.15 E-value=0.051 Score=62.97 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.++-|.++|++|.|||.||+.+|...
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 36678899999999999999999874
No 307
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.14 E-value=0.021 Score=48.86 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.6
Q ss_pred EEEEeccCcchHHHHHHHHHhhhc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
++.|+|.+|+||||||+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998864
No 308
>PLN02674 adenylate kinase
Probab=96.14 E-value=0.018 Score=53.25 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+.|.|++|+||||+|..++.++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3467899999999999999998875
No 309
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.13 E-value=0.019 Score=50.53 Aligned_cols=106 Identities=21% Similarity=0.266 Sum_probs=55.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeec--ccccccccHHHHHHHHHHHHhCCCCccCCCCc-hHHHHh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANV--REESNKLGVIRVRDEVISQVLGENLKVGTLTI-PQNIKK 286 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~~l~~ 286 (505)
...+++|.|+.|+|||||++.++...... .+.+.+... ....+... ....+. .-.+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~lar 84 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAA 84 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHH
Confidence 35689999999999999999988754332 233333210 00011000 111111 233445
Q ss_pred ccCCCeEEEEEeCCC--CCHHHHHHHhcCcCCC-CC-CCEEEEEeCcchhhc
Q 042739 287 GLQRMKVLIVLDDVH--DEFTQLESLAGVIDRF-SP-GSRIIITTRDKRVLD 334 (505)
Q Consensus 287 ~l~~~~~LlVlDdv~--~~~~~~~~l~~~l~~~-~~-~~~iliTsR~~~~~~ 334 (505)
.+..++-++++|+-- -+....+.+...+... .. +..||++|.+.....
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 555677899999873 2223333232222211 12 356777777664443
No 310
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.013 Score=51.52 Aligned_cols=121 Identities=16% Similarity=0.222 Sum_probs=59.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCc---------cCCCCc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLK---------VGTLTI 280 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---------~~~~~~ 280 (505)
...+++|.|+.|.|||||++.++-.... ..+.+++.... ... ..... ....+........- ....+.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~-~~~-~~~~~-~~~~i~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVD-LRD-LDLES-LRKNIAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEE-hhh-cCHHH-HHhhEEEEcCCchhccchHHHHhhCHHHH
Confidence 3568999999999999999999876543 23334443110 000 00000 00000000000000 000111
Q ss_pred -hHHHHhccCCCeEEEEEeCCC--CCHHHHHHHhcCcCCCCCCCEEEEEeCcchhhc
Q 042739 281 -PQNIKKGLQRMKVLIVLDDVH--DEFTQLESLAGVIDRFSPGSRIIITTRDKRVLD 334 (505)
Q Consensus 281 -~~~l~~~l~~~~~LlVlDdv~--~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~ 334 (505)
.-.+...+..++-++++|+-- -+....+.+...+.....+..||++|.+.....
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 223445556678899999974 222333333333322223567888888765544
No 311
>PRK03839 putative kinase; Provisional
Probab=96.12 E-value=0.0047 Score=54.79 Aligned_cols=24 Identities=33% Similarity=0.663 Sum_probs=21.7
Q ss_pred EEEEeccCcchHHHHHHHHHhhhc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.|.|.|++|+||||+++.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999864
No 312
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.11 E-value=0.005 Score=54.13 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=23.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...|.|+|++|+||||+|+.++..+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999999863
No 313
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.061 Score=48.73 Aligned_cols=146 Identities=21% Similarity=0.356 Sum_probs=75.7
Q ss_pred echhhHHHHHHhhhc-----------cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHH
Q 042739 192 GINSRIEEIKSLLCL-----------ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRV 260 (505)
Q Consensus 192 GR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 260 (505)
|-+..+++|.+.+.. +-..++-+.++|++|.|||-||+.++++. .+.|+. + +. ..+
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~fir-v---sg----sel 217 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR-V---SG----SEL 217 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE-e---ch----HHH
Confidence 345556666655432 11335678899999999999999999863 233333 2 21 111
Q ss_pred HHHHHHHHhCCCCccCCCCc-hHHHHhccCCCeEEEEEeCCCCC-------------HHHHH---HHhcCcCCC--CCCC
Q 042739 261 RDEVISQVLGENLKVGTLTI-PQNIKKGLQRMKVLIVLDDVHDE-------------FTQLE---SLAGVIDRF--SPGS 321 (505)
Q Consensus 261 ~~~ll~~~~~~~~~~~~~~~-~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~---~l~~~l~~~--~~~~ 321 (505)
.+.. .++.. .. .+.+.-.-..-+-+|+.|.+ ++ .+... .++..+..+ ..+.
T Consensus 218 vqk~----igegs-----rmvrelfvmarehapsiifmdei-dsigs~r~e~~~ggdsevqrtmlellnqldgfeatkni 287 (404)
T KOG0728|consen 218 VQKY----IGEGS-----RMVRELFVMAREHAPSIIFMDEI-DSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNI 287 (404)
T ss_pred HHHH----hhhhH-----HHHHHHHHHHHhcCCceEeeecc-cccccccccCCCCccHHHHHHHHHHHHhccccccccce
Confidence 1111 11110 00 11111112345778888888 32 12222 223333322 3466
Q ss_pred EEEEEeCcchhhc-----ccCCCcEEEcCCCCHhHHHHHHHHhh
Q 042739 322 RIIITTRDKRVLD-----KCEVSNIFEVKGLEHNKAFELFCRKA 360 (505)
Q Consensus 322 ~iliTsR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~ 360 (505)
++|..|..-+++. .......++.++-+.+.-.+++.-+.
T Consensus 288 kvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 288 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 7887665443322 12234568888888777777775444
No 314
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.10 E-value=0.0058 Score=55.59 Aligned_cols=28 Identities=39% Similarity=0.624 Sum_probs=24.4
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
+...+++|.|++|+|||||++.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467999999999999999999987654
No 315
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.09 E-value=0.0061 Score=53.19 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=20.7
Q ss_pred EEEeccCcchHHHHHHHHHhhhcc
Q 042739 214 VGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
+.|+|++|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999988753
No 316
>PRK04040 adenylate kinase; Provisional
Probab=96.07 E-value=0.0059 Score=54.41 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=23.0
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.+|+|+|++|+||||+++.++..+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999874
No 317
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.06 E-value=0.035 Score=48.79 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.9
Q ss_pred EEEEeccCcchHHHHHHHHHhhhccc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
++.++|++|+||||++..++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 57899999999999999999887655
No 318
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.072 Score=49.62 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=36.0
Q ss_pred CCceechhhHHHHHHhhh----------ccCCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 188 DGFIGINSRIEEIKSLLC----------LESHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
....|-+...+.|.+... ......+-|.++||+|.|||-||+.++...-
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 446677777777766442 1223367899999999999999999998754
No 319
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.02 E-value=0.0078 Score=53.08 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=24.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
...+++|.|++|+||||+|+.++..+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999988754
No 320
>PF13245 AAA_19: Part of AAA domain
Probab=96.02 E-value=0.017 Score=42.90 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=19.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.+++.|.|++|.|||+++.+....+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578889999999996666655543
No 321
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.02 E-value=0.0055 Score=54.70 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.++++|.|++|+||||+|+.++..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999765
No 322
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.02 E-value=0.0056 Score=54.03 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=22.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.+++.++|++|+||||+|+.+.....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 35899999999999999999988753
No 323
>PRK06217 hypothetical protein; Validated
Probab=96.01 E-value=0.025 Score=50.23 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.7
Q ss_pred EEEEeccCcchHHHHHHHHHhhhc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.|+|.|.+|+||||||++++..+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998863
No 324
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.073 Score=48.68 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=33.0
Q ss_pred ceechhhHHHHHHhhhc-----------cCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 190 FIGINSRIEEIKSLLCL-----------ESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 190 fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.=|-.++++.|++.... +-+.++-|.++|++|.|||-+|+.++++.
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 33555666666664431 22346678899999999999999999884
No 325
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.01 E-value=0.016 Score=50.59 Aligned_cols=118 Identities=13% Similarity=0.081 Sum_probs=57.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEee---cccccccccH--HHHHHHHHHHHhCCCCccCCCCc-hHH
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMAN---VREESNKLGV--IRVRDEVISQVLGENLKVGTLTI-PQN 283 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~---~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~~~~~-~~~ 283 (505)
...+++|.|+.|.|||||++.++-..... .+.+++.. +.-..+...+ ..+...+... ........+. .-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 35689999999999999999998764322 22222211 0001111100 0111111100 1111111122 334
Q ss_pred HHhccCCCeEEEEEeCCC--CCHHHHHHHhcCcCCCCCCCEEEEEeCcchhh
Q 042739 284 IKKGLQRMKVLIVLDDVH--DEFTQLESLAGVIDRFSPGSRIIITTRDKRVL 333 (505)
Q Consensus 284 l~~~l~~~~~LlVlDdv~--~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~ 333 (505)
+.+.+..++-++++|+-- -+......+...+... +..+|++|.+....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 455556677899999873 2233333333333222 35677777776543
No 326
>PRK06547 hypothetical protein; Provisional
Probab=96.00 E-value=0.0065 Score=53.25 Aligned_cols=27 Identities=33% Similarity=0.286 Sum_probs=24.1
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
....+|+|.|++|+||||||..++...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999874
No 327
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.067 Score=58.01 Aligned_cols=107 Identities=12% Similarity=0.197 Sum_probs=66.3
Q ss_pred ceechhhHHHHHHhhhccC------CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHH
Q 042739 190 FIGINSRIEEIKSLLCLES------HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDE 263 (505)
Q Consensus 190 fvGR~~el~~l~~~L~~~~------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 263 (505)
.+|-+.-+..+.+.+.... .....+.+.|+.|+|||.||+.++..+-+..+..+-+. +..+..
T Consensus 564 V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD----------mse~~e- 632 (898)
T KOG1051|consen 564 VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD----------MSEFQE- 632 (898)
T ss_pred ccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec----------hhhhhh-
Confidence 4555555555555554211 13557889999999999999999998755444333333 222222
Q ss_pred HHHHHhCCCCccCCCCchHHHHhccCCCe-EEEEEeCCC-CCHHHHH
Q 042739 264 VISQVLGENLKVGTLTIPQNIKKGLQRMK-VLIVLDDVH-DEFTQLE 308 (505)
Q Consensus 264 ll~~~~~~~~~~~~~~~~~~l~~~l~~~~-~LlVlDdv~-~~~~~~~ 308 (505)
...+.+.+......+....|-+.+++++ .+|+|||++ .+.+...
T Consensus 633 -vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n 678 (898)
T KOG1051|consen 633 -VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLN 678 (898)
T ss_pred -hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHH
Confidence 4455455544445555667888888776 588899996 3344444
No 328
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=95.98 E-value=0.044 Score=56.90 Aligned_cols=48 Identities=23% Similarity=0.410 Sum_probs=39.5
Q ss_pred CCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhh
Q 042739 187 LDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 187 ~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...++|....++++.+.+..-......|.|+|++|.||+.+|+.+.+.
T Consensus 218 f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 218 LGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 345999999999998887643344567889999999999999999876
No 329
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.97 E-value=0.022 Score=51.05 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=20.2
Q ss_pred EEEeccCcchHHHHHHHHHhhh
Q 042739 214 VGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
|+|.|++|+||||+|..++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999999874
No 330
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.06 Score=55.89 Aligned_cols=178 Identities=19% Similarity=0.207 Sum_probs=91.4
Q ss_pred CCCCCceechhhHHHHHHh---hhccC-------CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeeccccccc
Q 042739 185 TDLDGFIGINSRIEEIKSL---LCLES-------HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNK 254 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~---L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 254 (505)
.......|.+...+++.+. |.... .=++-|.++||+|.|||.||+.++-...-.| +. .+.
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF-----f~----iSG- 216 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS----ISG- 216 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc-----ee----ccc-
Confidence 3345577887666655554 43221 1266789999999999999999998753322 11 000
Q ss_pred ccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCC----------------HHHHHHHhcCcCCCC
Q 042739 255 LGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDE----------------FTQLESLAGVIDRFS 318 (505)
Q Consensus 255 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~~l~~~l~~~~ 318 (505)
.++. .... ..+.....+...+..++-+++|++|.+ |. .+.+..++.....+.
T Consensus 217 S~FV-------emfV----GvGAsRVRdLF~qAkk~aP~IIFIDEi-DAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~ 284 (596)
T COG0465 217 SDFV-------EMFV----GVGASRVRDLFEQAKKNAPCIIFIDEI-DAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 284 (596)
T ss_pred hhhh-------hhhc----CCCcHHHHHHHHHhhccCCCeEEEehh-hhcccccCCCCCCCchHHHHHHHHHHhhhccCC
Confidence 0000 0000 111111133444455567899999998 31 123445555555444
Q ss_pred CC-CEEEE--EeCcchh----hcccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHH
Q 042739 319 PG-SRIII--TTRDKRV----LDKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLA 387 (505)
Q Consensus 319 ~~-~~ili--TsR~~~~----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 387 (505)
.+ .-|++ |.|..-. +........+.++..+...-.+.+.-++....... . -+ ...|++.+-|.-.|
T Consensus 285 ~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~-~-Vd-l~~iAr~tpGfsGA 357 (596)
T COG0465 285 GNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAE-D-VD-LKKIARGTPGFSGA 357 (596)
T ss_pred CCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCC-c-CC-HHHHhhhCCCcccc
Confidence 22 22333 3343211 12223445677777776666666665553222211 1 11 22377777776544
No 331
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.96 E-value=0.037 Score=52.24 Aligned_cols=114 Identities=14% Similarity=0.081 Sum_probs=59.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCC-c--c---CCCCchHHH
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENL-K--V---GTLTIPQNI 284 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~--~---~~~~~~~~l 284 (505)
...++|.|++|.|||||.+.++..+... .+.+++... .........++.. .... ..+.. . . ........+
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~~d~~~ei~~-~~~~-~~q~~~~~r~~v~~~~~k~~~~ 186 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGIVDERSEIAG-CVNG-VPQHDVGIRTDVLDGCPKAEGM 186 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-EeecchhHHHHHH-Hhcc-cccccccccccccccchHHHHH
Confidence 5688999999999999999999877543 223333210 0110000111111 1111 11111 0 0 010112222
Q ss_pred HhccC-CCeEEEEEeCCCCCHHHHHHHhcCcCCCCCCCEEEEEeCcchh
Q 042739 285 KKGLQ-RMKVLIVLDDVHDEFTQLESLAGVIDRFSPGSRIIITTRDKRV 332 (505)
Q Consensus 285 ~~~l~-~~~~LlVlDdv~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~ 332 (505)
...+. ..+-++++|.. ...+....+...+ ..|..+|+||-+...
T Consensus 187 ~~~i~~~~P~villDE~-~~~e~~~~l~~~~---~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEI-GREEDVEALLEAL---HAGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHhCCCCEEEEeCC-CcHHHHHHHHHHH---hCCCEEEEEechhHH
Confidence 22222 46889999999 6666566555544 257788888876533
No 332
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.95 E-value=0.0055 Score=51.64 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.9
Q ss_pred EEEEeccCcchHHHHHHHHHhhhc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
+|.|.|++|+||||+|+.+++++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 588999999999999999999864
No 333
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.95 E-value=0.011 Score=56.98 Aligned_cols=48 Identities=23% Similarity=0.245 Sum_probs=35.0
Q ss_pred HHHHhhh-ccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 199 EIKSLLC-LESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 199 ~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
.|..+|. .+-+..+++.|+|++|+||||||.+++.........++|+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 3444553 33455789999999999999999999887665544556664
No 334
>PRK00625 shikimate kinase; Provisional
Probab=95.95 E-value=0.006 Score=53.51 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.5
Q ss_pred EEEEeccCcchHHHHHHHHHhhhc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.|.|+|++|+||||+++.++.++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998864
No 335
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.94 E-value=0.011 Score=58.34 Aligned_cols=93 Identities=14% Similarity=0.247 Sum_probs=50.8
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhccccc-ceEE-EeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccC
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYFQ-GNCF-MANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQ 289 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~ 289 (505)
..+.|+|+.|+||||++..++..+....+ ..++ +.+..+..-. .. ..+.. ................++..|+
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~-~~----~~~~~-~~q~evg~~~~~~~~~l~~aLR 223 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILG-SP----DDLLP-PAQSQIGRDVDSFANGIRLALR 223 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccC-CC----ceeec-ccccccCCCccCHHHHHHHhhc
Confidence 47889999999999999999887643322 2222 2211110000 00 00000 0000001111122567888899
Q ss_pred CCeEEEEEeCCCCCHHHHHHHh
Q 042739 290 RMKVLIVLDDVHDEFTQLESLA 311 (505)
Q Consensus 290 ~~~~LlVlDdv~~~~~~~~~l~ 311 (505)
..+=.|+++.+ .+.+..+..+
T Consensus 224 ~~PD~I~vGEi-Rd~et~~~al 244 (372)
T TIGR02525 224 RAPKIIGVGEI-RDLETFQAAV 244 (372)
T ss_pred cCCCEEeeCCC-CCHHHHHHHH
Confidence 99999999999 5666665433
No 336
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.94 E-value=0.0093 Score=53.04 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=29.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEE
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFM 245 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (505)
.++++|+|+.|+|||||+..++......|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 46899999999999999999999988877544444
No 337
>PHA02244 ATPase-like protein
Probab=95.93 E-value=0.0078 Score=58.56 Aligned_cols=51 Identities=18% Similarity=0.053 Sum_probs=33.3
Q ss_pred CCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 187 LDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 187 ~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
...|+|....+......+..--.....|.|+|++|+|||+||..+++....
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345777766664443333211112335778999999999999999988543
No 338
>PRK02496 adk adenylate kinase; Provisional
Probab=95.93 E-value=0.016 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=20.7
Q ss_pred EEEEeccCcchHHHHHHHHHhhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.+.|.|++|+||||+|+.++..+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 339
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.90 E-value=0.0071 Score=53.90 Aligned_cols=33 Identities=21% Similarity=0.093 Sum_probs=26.4
Q ss_pred EEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 214 VGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
+.|.|++|+|||+|+.+++......-..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999999887655445566664
No 340
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.89 E-value=0.0058 Score=56.42 Aligned_cols=47 Identities=23% Similarity=0.169 Sum_probs=33.3
Q ss_pred HHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc-ccceEEEe
Q 042739 200 IKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY-FQGNCFMA 246 (505)
Q Consensus 200 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 246 (505)
|-+.|..+-+...++.|.|++|+|||+|+.+++.....+ -..++|+.
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 444554333446799999999999999999999876555 45566665
No 341
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.89 E-value=0.051 Score=54.77 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.+.++.++|++|+||||.+..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999999988754
No 342
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=95.89 E-value=0.66 Score=46.97 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=40.3
Q ss_pred CCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhh
Q 042739 186 DLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
....+||+...++++.+.+.+-.+.-..|.|+|..|+||-.+|+.+-..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~ 187 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQA 187 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhh
Confidence 4567999999999999988754444557889999999999999877654
No 343
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.89 E-value=0.05 Score=50.66 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=20.9
Q ss_pred EEEEeccCcchHHHHHHHHHhhhc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
+..|.|++|+|||+|+.+++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999998653
No 344
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.89 E-value=0.0079 Score=53.24 Aligned_cols=25 Identities=44% Similarity=0.574 Sum_probs=22.2
Q ss_pred EEEEeccCcchHHHHHHHHHhhhcc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
+|+|.|.+|+||||||..++..+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999988653
No 345
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.054 Score=47.14 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=23.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
...+.|.|+.|+|||||.+-++--.+..
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl~p~ 55 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLLRPD 55 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHcccCCC
Confidence 4588899999999999999998755443
No 346
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.88 E-value=0.039 Score=54.15 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=21.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.+++.++||.|+||||-...++.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 78999999999999986666665543
No 347
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.88 E-value=0.014 Score=53.99 Aligned_cols=48 Identities=19% Similarity=0.069 Sum_probs=33.4
Q ss_pred HHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 199 EIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
.|.+.|..+-.....+.|.|++|+|||+|+.+++.........++|+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 344444333344679999999999999999998876444444566665
No 348
>PRK05973 replicative DNA helicase; Provisional
Probab=95.88 E-value=0.011 Score=54.30 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=29.2
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
....++.|.|.+|+|||+|+.+++.....+...++|+.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34568999999999999999999987655444455554
No 349
>PRK04328 hypothetical protein; Provisional
Probab=95.87 E-value=0.012 Score=55.03 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=34.6
Q ss_pred HHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 199 EIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
.|-++|..+-+...++.|.|++|+|||+|+.+++.........++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344455433345779999999999999999999887544445566665
No 350
>PRK14529 adenylate kinase; Provisional
Probab=95.86 E-value=0.018 Score=52.54 Aligned_cols=93 Identities=19% Similarity=0.114 Sum_probs=49.4
Q ss_pred EEEeccCcchHHHHHHHHHhhhcccc-cceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCC-
Q 042739 214 VGIWGMGGIGKTTIASVVFHQISRYF-QGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRM- 291 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~- 291 (505)
|+|.|++|+||||+++.++..+.-.+ ..+-.+.. .......+...+++++. ...-.++.-....+.+.+.+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~--~i~~~t~lg~~i~~~i~----~G~lvpdei~~~lv~~~l~~~~ 76 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFRE--HIGGGTELGKKAKEYID----RGDLVPDDITIPMILETLKQDG 76 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhh--hccCCChHHHHHHHHHh----ccCcchHHHHHHHHHHHHhccC
Confidence 77899999999999999998764221 11111110 01111222222333322 222222222255555555431
Q ss_pred eEEEEEeCCCCCHHHHHHHhc
Q 042739 292 KVLIVLDDVHDEFTQLESLAG 312 (505)
Q Consensus 292 ~~LlVlDdv~~~~~~~~~l~~ 312 (505)
..=+|||++-.+..+.+.|..
T Consensus 77 ~~g~iLDGfPRt~~Qa~~l~~ 97 (223)
T PRK14529 77 KNGWLLDGFPRNKVQAEKLWE 97 (223)
T ss_pred CCcEEEeCCCCCHHHHHHHHH
Confidence 345899999777777776644
No 351
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.86 E-value=0.02 Score=49.81 Aligned_cols=117 Identities=18% Similarity=0.206 Sum_probs=59.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCc-hHHHHhcc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTI-PQNIKKGL 288 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~~l~~~l 288 (505)
...+++|.|+.|.|||||.+.++-.... ..+.+++... .... ..... ...............+. .-.+.+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~-~~~~-~~~~~----~~~~~i~~~~qLS~G~~qrl~laral 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGK-EVSF-ASPRD----ARRAGIAMVYQLSVGERQMVEIARAL 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCE-ECCc-CCHHH----HHhcCeEEEEecCHHHHHHHHHHHHH
Confidence 3568999999999999999999876432 2344444311 1110 01101 01100000001111111 33344555
Q ss_pred CCCeEEEEEeCCC--CCHHHHHHHhcCcCCC-CCCCEEEEEeCcchhh
Q 042739 289 QRMKVLIVLDDVH--DEFTQLESLAGVIDRF-SPGSRIIITTRDKRVL 333 (505)
Q Consensus 289 ~~~~~LlVlDdv~--~~~~~~~~l~~~l~~~-~~~~~iliTsR~~~~~ 333 (505)
-.++-++++|+-- -+....+.+...+... ..+..+|++|.+....
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 6677899999973 2333333333333222 2366788888876533
No 352
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.84 E-value=0.0086 Score=56.72 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
.+-+.++|++|+|||++++.+...+..
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~ 59 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDS 59 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTT
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCc
Confidence 457889999999999999998876543
No 353
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.83 E-value=0.015 Score=56.18 Aligned_cols=56 Identities=21% Similarity=0.259 Sum_probs=38.9
Q ss_pred CCCCCceechhhHHHH---HHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccccc
Q 042739 185 TDLDGFIGINSRIEEI---KSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQ 240 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l---~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 240 (505)
.....+||.....+.. .++.....-..+.+.|.|++|.|||+||..+++.+..+.|
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~P 79 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVP 79 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-
T ss_pred eccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCC
Confidence 4456899998776654 3444443334789999999999999999999999877655
No 354
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.82 E-value=0.013 Score=56.55 Aligned_cols=48 Identities=23% Similarity=0.256 Sum_probs=35.1
Q ss_pred HHHHhhh-ccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 199 EIKSLLC-LESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 199 ~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
.|..+|. .+-+..+++-|+|++|+|||+||.+++..........+|+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 3444553 33345789999999999999999999987665545566665
No 355
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.03 Score=57.20 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=24.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
..++++|+|++|+||||++..++..+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 36799999999999999999998876443
No 356
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.18 Score=46.03 Aligned_cols=49 Identities=24% Similarity=0.335 Sum_probs=34.0
Q ss_pred ceechhhHHHHHHhhhc-----------cCCCceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 190 FIGINSRIEEIKSLLCL-----------ESHDARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 190 fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.=|-++.+++|.+.+-. +-..++-+..+||+|.|||-+|+..+.+....
T Consensus 173 iGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT 232 (424)
T KOG0652|consen 173 IGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT 232 (424)
T ss_pred cccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch
Confidence 44666666666665421 11235678899999999999999998775443
No 357
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.79 E-value=0.012 Score=52.97 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=28.3
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEE
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFM 245 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (505)
+.+.+++|+|++|+||||||+.+...+.......+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3467999999999999999999998775433333444
No 358
>COG3910 Predicted ATPase [General function prediction only]
Probab=95.79 E-value=0.083 Score=45.95 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=21.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
..++..|+|..|+|||||...++..
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~ 60 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAG 60 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhh
Confidence 3578999999999999999988764
No 359
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.79 E-value=0.038 Score=48.61 Aligned_cols=27 Identities=30% Similarity=0.598 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...+++|.|+.|.|||||++.++-...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356899999999999999999887543
No 360
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.78 E-value=0.042 Score=53.10 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=27.4
Q ss_pred HHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhh
Q 042739 199 EIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.|-++|..+-....++-|+|++|+|||+|+.+++-.
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~ 119 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVT 119 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 444556533345789999999999999999998854
No 361
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.78 E-value=0.024 Score=52.31 Aligned_cols=37 Identities=38% Similarity=0.393 Sum_probs=25.3
Q ss_pred hhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 195 SRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 195 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+.+...+.. ..+..|+|++|.|||+++..+...+
T Consensus 5 ~Q~~Ai~~~~~~----~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 5 SQREAIQSALSS----NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHCTS----SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC----CCCEEEECCCCCChHHHHHHHHHHh
Confidence 345556666642 2278999999999999888887776
No 362
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.77 E-value=0.011 Score=53.03 Aligned_cols=29 Identities=38% Similarity=0.457 Sum_probs=26.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.+.+|+|.|.+|+||||+|++++..+...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 46799999999999999999999988754
No 363
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.76 E-value=0.019 Score=55.67 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=30.1
Q ss_pred HHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 199 EIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.|.+.+....++..+|+|+|++|+|||||+..+...+...
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3444443223557899999999999999999998887654
No 364
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.75 E-value=0.0087 Score=54.33 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=23.7
Q ss_pred cCCCceEEEEeccCcchHHHHHHHHHhh
Q 042739 207 ESHDARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 207 ~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.....+.++|+|++|+|||||+..+...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3445789999999999999999998754
No 365
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.75 E-value=0.019 Score=54.69 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=43.7
Q ss_pred CCCCCceechhhHHH---HHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccccc
Q 042739 185 TDLDGFIGINSRIEE---IKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQ 240 (505)
Q Consensus 185 ~~~~~fvGR~~el~~---l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 240 (505)
...+.|||-.+..+. +.++..++.-..+.|.|.||+|.|||+||..+++.+...-+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 566789998766554 45555555556889999999999999999999999876544
No 366
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=95.73 E-value=0.097 Score=44.21 Aligned_cols=50 Identities=14% Similarity=0.062 Sum_probs=31.2
Q ss_pred HHHHHHHhhcceEEEEecCCcccchhhHHHHHHHHHhhhhCCCeEEEEEeec
Q 042739 61 PALSNAIETTDISIIIFSKGYASSKWCLNELVKTLDCKRTNGQIVIPVFYQI 112 (505)
Q Consensus 61 ~~i~~~i~~s~~~i~v~s~~~~~s~~~~~El~~~~~~~~~~~~~v~pv~~~~ 112 (505)
.++.++|+.+++++.|++...-.+.+. .++...+.... .+..++.|+-+.
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivlNK~ 52 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLLNKA 52 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEEech
Confidence 467889999999999998765445442 24444444321 344566665443
No 367
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.70 E-value=0.037 Score=55.91 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.++++++|++|+||||++..++..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988765
No 368
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.69 E-value=0.015 Score=57.04 Aligned_cols=48 Identities=25% Similarity=0.189 Sum_probs=39.0
Q ss_pred CceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccccc
Q 042739 189 GFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQ 240 (505)
Q Consensus 189 ~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 240 (505)
.++|++.....+...+..+ +.+.+.|++|+|||+||+.++..+...|.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 25 VVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred eeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 3899888888887777533 36889999999999999999999875443
No 369
>PRK05439 pantothenate kinase; Provisional
Probab=95.68 E-value=0.013 Score=56.09 Aligned_cols=30 Identities=33% Similarity=0.427 Sum_probs=25.3
Q ss_pred CCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 208 SHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 208 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
.+.+-+|+|.|.+|+||||+|..+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999999886643
No 370
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.67 E-value=0.013 Score=56.45 Aligned_cols=51 Identities=25% Similarity=0.449 Sum_probs=43.4
Q ss_pred CCceechhhHHHHHHhhhccC----CCceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 188 DGFIGINSRIEEIKSLLCLES----HDARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
+.|+|.++.+++|.+.+.... ...+++.+.||.|.|||||+..+.+-+...
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 479999999999999887432 347899999999999999999998877654
No 371
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.67 E-value=0.034 Score=55.05 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=28.4
Q ss_pred eEEEEeccCcchHHHHHHHHHhhh--cccccceEEEe
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQI--SRYFQGNCFMA 246 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~--~~~f~~~~~~~ 246 (505)
+++.|.|.+|.|||.||..++.++ ........+++
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~ 38 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLC 38 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence 578999999999999999999998 55555555554
No 372
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.66 E-value=0.035 Score=55.04 Aligned_cols=51 Identities=22% Similarity=0.232 Sum_probs=35.3
Q ss_pred CceechhhHHHHHHhhhcc------------CCCceEEEEeccCcchHHHHHHHHHhhhcccc
Q 042739 189 GFIGINSRIEEIKSLLCLE------------SHDARIVGIWGMGGIGKTTIASVVFHQISRYF 239 (505)
Q Consensus 189 ~fvGR~~el~~l~~~L~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (505)
.++|.++..+.+.-.+... ...++.+.++|++|+|||+||+.++..+...|
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 3666666666665444310 11246788999999999999999999875443
No 373
>PRK09354 recA recombinase A; Provisional
Probab=95.66 E-value=0.017 Score=56.23 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=35.8
Q ss_pred HHHHhhh-ccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 199 EIKSLLC-LESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 199 ~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
.|..+|. .+-+..+++-|+|++|+|||+||.+++......-...+|+.
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 4445554 33455789999999999999999999987665555566665
No 374
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.66 E-value=0.0074 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=20.5
Q ss_pred EEEEeccCcchHHHHHHHHHhhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36899999999999999998874
No 375
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.66 E-value=0.015 Score=49.97 Aligned_cols=35 Identities=29% Similarity=0.550 Sum_probs=29.4
Q ss_pred hhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhh
Q 042739 195 SRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 195 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
..+++|.+.|. + +++++.|..|+|||||+..+...
T Consensus 24 ~g~~~l~~~l~----~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK----G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT----T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc----C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 56778888884 2 68999999999999999998765
No 376
>PRK13947 shikimate kinase; Provisional
Probab=95.66 E-value=0.0089 Score=52.45 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.2
Q ss_pred EEEEeccCcchHHHHHHHHHhhhcc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
.|.|.|++|+||||+++.++..+.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998743
No 377
>PRK14526 adenylate kinase; Provisional
Probab=95.65 E-value=0.024 Score=51.47 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.7
Q ss_pred EEEeccCcchHHHHHHHHHhhh
Q 042739 214 VGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
++|+|++|+||||++..++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998764
No 378
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.65 E-value=0.017 Score=50.88 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...+++|.|+.|.|||||++.++-...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 356899999999999999999987543
No 379
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.64 E-value=0.0092 Score=52.84 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.2
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.+++|.|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 380
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.64 E-value=0.0086 Score=51.22 Aligned_cols=20 Identities=35% Similarity=0.665 Sum_probs=18.7
Q ss_pred EEEEeccCcchHHHHHHHHH
Q 042739 213 IVGIWGMGGIGKTTIASVVF 232 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~ 232 (505)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999999988
No 381
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.63 E-value=0.048 Score=56.14 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=61.2
Q ss_pred hHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCcc
Q 042739 196 RIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKV 275 (505)
Q Consensus 196 el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 275 (505)
.++.+..++. ....++.|+|+.|.||||++..+...+.......+-+.+..+.. +.. +.+.. ....
T Consensus 230 ~~~~l~~~~~---~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~----~~~-----~~q~~--v~~~ 295 (486)
T TIGR02533 230 LLSRFERLIR---RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ----IEG-----IGQIQ--VNPK 295 (486)
T ss_pred HHHHHHHHHh---cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee----cCC-----CceEE--Eccc
Confidence 3445555553 23458999999999999999988877643322222222111000 000 00000 0000
Q ss_pred CCCCchHHHHhccCCCeEEEEEeCCCCCHHHHHHHhcCcCCCCCCCEEEEEeC
Q 042739 276 GTLTIPQNIKKGLQRMKVLIVLDDVHDEFTQLESLAGVIDRFSPGSRIIITTR 328 (505)
Q Consensus 276 ~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~l~~~l~~~~~~~~iliTsR 328 (505)
........++..|+..+=.|++.++ .+.+........ ...++.++||=
T Consensus 296 ~g~~f~~~lr~~LR~dPDvI~vGEi-Rd~eta~~a~~a----a~tGHlvlsTl 343 (486)
T TIGR02533 296 IGLTFAAGLRAILRQDPDIIMVGEI-RDLETAQIAIQA----SLTGHLVLSTL 343 (486)
T ss_pred cCccHHHHHHHHHhcCCCEEEEeCC-CCHHHHHHHHHH----HHhCCcEEEEE
Confidence 0112267788889999999999999 555554443332 12234555553
No 382
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.63 E-value=0.0084 Score=50.47 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=21.6
Q ss_pred EEEeccCcchHHHHHHHHHhhhccc
Q 042739 214 VGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
++|+|+.|+|||||++.++..+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 6899999999999999999876443
No 383
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.62 E-value=0.037 Score=48.10 Aligned_cols=118 Identities=17% Similarity=0.100 Sum_probs=57.9
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHh--CCCC--ccCCCCc-------
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVL--GENL--KVGTLTI------- 280 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~--~~~~~~~------- 280 (505)
..|.|++..|.||||+|...+.+...+-..++.+--+.. ....+-...+..+.-.+. +... ...+.+.
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg-~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKG-AWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecC-CcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 477788889999999999999876554333322221111 111222233322200000 0000 0001110
Q ss_pred -hHHHHhccC-CCeEEEEEeCCC----CCHHHHHHHhcCcCCCCCCCEEEEEeCcc
Q 042739 281 -PQNIKKGLQ-RMKVLIVLDDVH----DEFTQLESLAGVIDRFSPGSRIIITTRDK 330 (505)
Q Consensus 281 -~~~l~~~l~-~~~~LlVlDdv~----~~~~~~~~l~~~l~~~~~~~~iliTsR~~ 330 (505)
....++.+. +.-=|||||.+- ...-..+.+...+...+.+..||+|.|+.
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 222333343 344599999982 11111223333333446788999999986
No 384
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.61 E-value=0.017 Score=50.48 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=31.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEee
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMAN 247 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~ 247 (505)
...|.|-|++|+|||+|..+.++.++++|...+...+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~D 49 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGD 49 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEece
Confidence 4789999999999999999999999988876655543
No 385
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.61 E-value=0.014 Score=56.20 Aligned_cols=34 Identities=32% Similarity=0.466 Sum_probs=26.2
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccccceEEE
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFM 245 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (505)
+++.+.|-||+||||+|...+-...+.......+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlv 35 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLV 35 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEe
Confidence 5889999999999999999988776654334444
No 386
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.60 E-value=0.014 Score=49.20 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=25.6
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhccc-ccceEEE
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRY-FQGNCFM 245 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~ 245 (505)
++|.|+|+.|+|||||++.+.+.+..+ +...++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik 35 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIK 35 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEE
Confidence 478999999999999999999987644 4433343
No 387
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.054 Score=50.81 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=25.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYF 239 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (505)
.+..++|||++|.|||-||+.++..+.-.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 367899999999999999999999875544
No 388
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.59 E-value=0.011 Score=54.51 Aligned_cols=38 Identities=11% Similarity=0.090 Sum_probs=28.4
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
+...++.|.|++|+|||+||.+++.....+...++++.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 34569999999999999999888877643334455554
No 389
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.59 E-value=0.15 Score=44.58 Aligned_cols=55 Identities=13% Similarity=0.294 Sum_probs=34.6
Q ss_pred hHHHHhccCCCeEEEEEeCCC---CCHHHHHHHhcCcCC-CCCCCEEEEEeCcchhhccc
Q 042739 281 PQNIKKGLQRMKVLIVLDDVH---DEFTQLESLAGVIDR-FSPGSRIIITTRDKRVLDKC 336 (505)
Q Consensus 281 ~~~l~~~l~~~~~LlVlDdv~---~~~~~~~~l~~~l~~-~~~~~~iliTsR~~~~~~~~ 336 (505)
.-.+.+.+-++|-+|+-|.-- |..-.++ ++..+.. ...|..||++|-+..+...+
T Consensus 145 RvaIARAiV~~P~vLlADEPTGNLDp~~s~~-im~lfeeinr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 145 RVAIARAIVNQPAVLLADEPTGNLDPDLSWE-IMRLFEEINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHHHHHccCCCeEeecCCCCCCChHHHHH-HHHHHHHHhhcCcEEEEEeccHHHHHhc
Confidence 445666677889999999652 3333333 2222221 24688999999998776665
No 390
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.58 E-value=0.018 Score=60.45 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=40.4
Q ss_pred CCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 187 LDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 187 ~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
++..+.|.+..+.|.++.........+|+|+|++|+||||+|+.++..+..
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 344677777777777777654555679999999999999999999998764
No 391
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.57 E-value=0.0085 Score=53.14 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=21.1
Q ss_pred EEEEeccCcchHHHHHHHHHhhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
+|+|.|.+|+||||||+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999875
No 392
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.54 E-value=0.0098 Score=50.58 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=21.1
Q ss_pred EEEEeccCcchHHHHHHHHHhhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
+|.|.|++|+||||+|+.++..+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 393
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.53 E-value=0.019 Score=59.40 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=38.5
Q ss_pred hHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 196 RIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 196 el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
-+..|.+.|..+-....++.|.|++|+|||+|+.+++.....+...++++.
T Consensus 248 Gi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 248 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred ChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 345666677654455789999999999999999999998765555555554
No 394
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.53 E-value=0.019 Score=55.28 Aligned_cols=35 Identities=34% Similarity=0.416 Sum_probs=27.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEE
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFM 245 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (505)
.+++.++|.||+||||+|...+-...........+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 47899999999999999999888776665433333
No 395
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.52 E-value=0.011 Score=52.43 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=23.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..+|+|-||-|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 45899999999999999999999876
No 396
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.51 E-value=0.038 Score=53.87 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=29.1
Q ss_pred HHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 198 EEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..+.+.|..+-....++-|+|++|+|||+|+.+++....
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~ 127 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQ 127 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhc
Confidence 344445543334578999999999999999999997643
No 397
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.49 E-value=0.021 Score=49.72 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=25.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
..++++|+|+.|+|||||+..+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45699999999999999999999887653
No 398
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.49 E-value=0.012 Score=52.40 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
+.++++|+|++|+|||||++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46789999999999999999998864
No 399
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.48 E-value=0.0095 Score=53.72 Aligned_cols=23 Identities=48% Similarity=0.739 Sum_probs=21.0
Q ss_pred EEEEeccCcchHHHHHHHHHhhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
+|+|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998876
No 400
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.47 E-value=0.0092 Score=54.70 Aligned_cols=24 Identities=42% Similarity=0.559 Sum_probs=21.7
Q ss_pred EEEEeccCcchHHHHHHHHHhhhc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
+|+|.|++|+||||||+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999998775
No 401
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.47 E-value=0.023 Score=52.39 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=32.8
Q ss_pred HHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 200 IKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 200 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
|.+.|..+-....++.|.|.+|+|||+++.+++......-..++|+.
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 44445433344679999999999999999999987544434455554
No 402
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.46 E-value=0.088 Score=57.19 Aligned_cols=128 Identities=18% Similarity=0.215 Sum_probs=67.6
Q ss_pred hhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCc
Q 042739 195 SRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLK 274 (505)
Q Consensus 195 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 274 (505)
....+|.+.+. ...++.|.|+.|+||||-.-+++.+..-.....+-+. -........+...+...+......
T Consensus 53 ~~~~~i~~ai~----~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~t----QPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 53 AVRDEILKAIE----QNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCT----QPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred HHHHHHHHHHH----hCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEec----CchHHHHHHHHHHHHHHhCCCcCc
Confidence 55667777774 3459999999999999998888876433222333333 122233444445555554432110
Q ss_pred -----------cCCC---Cc--hHHHHhccCC-----CeEEEEEeCCCCCHHHHHHHhcC----cCCCCCCCEEEEEeCc
Q 042739 275 -----------VGTL---TI--PQNIKKGLQR-----MKVLIVLDDVHDEFTQLESLAGV----IDRFSPGSRIIITTRD 329 (505)
Q Consensus 275 -----------~~~~---~~--~~~l~~~l~~-----~~~LlVlDdv~~~~~~~~~l~~~----l~~~~~~~~iliTsR~ 329 (505)
.... .. -..|.+.+.+ +=-.||+|.+|+-.-..+.+++. +....+..+|||+|-.
T Consensus 125 ~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSAT 204 (845)
T COG1643 125 TVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSAT 204 (845)
T ss_pred eeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 0000 00 1223333332 23479999997432222322222 2223345899999864
Q ss_pred c
Q 042739 330 K 330 (505)
Q Consensus 330 ~ 330 (505)
-
T Consensus 205 l 205 (845)
T COG1643 205 L 205 (845)
T ss_pred c
Confidence 4
No 403
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.45 E-value=0.018 Score=47.00 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.6
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.+..+|.+.|.=|.|||||++.+++.+
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 456799999999999999999999875
No 404
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.45 E-value=0.048 Score=48.92 Aligned_cols=28 Identities=25% Similarity=0.094 Sum_probs=23.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.--..|.|++|+|||||.+.+++-+...
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g 164 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDG 164 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhcc
Confidence 3347789999999999999999876544
No 405
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.44 E-value=0.027 Score=48.62 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=23.8
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYF 239 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (505)
+.|+++|+.|+||||+.+.+++.+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999998865544
No 406
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.44 E-value=0.013 Score=52.47 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..++.|.|.+|+||||+|..++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 407
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.43 E-value=0.2 Score=53.85 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.++++++|+.|+||||++..++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 57999999999999999999997653
No 408
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.43 E-value=0.03 Score=53.85 Aligned_cols=48 Identities=17% Similarity=0.168 Sum_probs=35.8
Q ss_pred CCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccc
Q 042739 188 DGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYF 239 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (505)
+.|+=....+..+...+.. .+.|.|.|++|+|||++|+.++..+...+
T Consensus 45 ~~y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 3455555566667777743 24688999999999999999999876543
No 409
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.43 E-value=0.02 Score=51.51 Aligned_cols=37 Identities=30% Similarity=0.462 Sum_probs=27.6
Q ss_pred EEEEeccCcchHHHHHHHHHhhhcccccceEEEeecc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVR 249 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 249 (505)
.|+|+|-||+||||+|..++.++.++-...+.+.+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaD 38 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDAD 38 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCC
Confidence 5899999999999999997777655544455555443
No 410
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.42 E-value=0.055 Score=52.92 Aligned_cols=45 Identities=13% Similarity=0.340 Sum_probs=35.8
Q ss_pred hhhHHHHHHhhhccC-CCceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 194 NSRIEEIKSLLCLES-HDARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 194 ~~el~~l~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
+.-.+.|.+.+...+ ..+.+|+|.|.=|+|||++.+.+.+.+...
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 344566667776433 568899999999999999999999988776
No 411
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.41 E-value=0.017 Score=50.17 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=22.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..+++|+||+|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 5689999999999999999999876
No 412
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.40 E-value=0.012 Score=48.80 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.+-|.|+|.||+|||||+.+++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 3467899999999999999999753
No 413
>PRK13808 adenylate kinase; Provisional
Probab=95.39 E-value=0.027 Score=54.48 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=20.0
Q ss_pred EEEeccCcchHHHHHHHHHhhh
Q 042739 214 VGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
|+|+|++|+||||++..++..+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7789999999999999998764
No 414
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.39 E-value=0.058 Score=48.32 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...+++|.|+.|.|||||++.++-.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3569999999999999999999854
No 415
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=95.38 E-value=2 Score=40.02 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=36.6
Q ss_pred CeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-hhhcccC-CCcEEEcCCC
Q 042739 291 MKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK-RVLDKCE-VSNIFEVKGL 347 (505)
Q Consensus 291 ~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~~-~~~~~~l~~L 347 (505)
..-++|+|+++ ........++..+...++++.+|++|.+. .+++... ....+.+.++
T Consensus 88 ~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~ 147 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSK 147 (261)
T ss_pred CCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCCh
Confidence 34577899996 46677888888887767777777777654 3333322 2234556555
No 416
>PRK15453 phosphoribulokinase; Provisional
Probab=95.38 E-value=0.021 Score=53.53 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=24.9
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
....+|+|.|.+|+||||+++.++..+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34679999999999999999999977654
No 417
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.36 E-value=0.034 Score=53.87 Aligned_cols=92 Identities=15% Similarity=0.113 Sum_probs=50.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCC-CccCCCCchHHHHhcc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGEN-LKVGTLTIPQNIKKGL 288 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~~~l~~~l 288 (505)
....++|+|+.|.|||||++.++..+.... ..+.+.+..+..... .....-..... .........+.+...+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~------~~~~~l~~~~~~~~~~~~~~~~~l~~~L 215 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPH------PNYVHLFYSKGGQGLAKVTPKDLLQSCL 215 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCC------CCEEEEEecCCCCCcCccCHHHHHHHHh
Confidence 346899999999999999999987764432 222232211111100 00000000000 0111122256677788
Q ss_pred CCCeEEEEEeCCCCCHHHHHH
Q 042739 289 QRMKVLIVLDDVHDEFTQLES 309 (505)
Q Consensus 289 ~~~~~LlVlDdv~~~~~~~~~ 309 (505)
+..+-.|++|.+ ...+.+..
T Consensus 216 r~~pd~ii~gE~-r~~e~~~~ 235 (308)
T TIGR02788 216 RMRPDRIILGEL-RGDEAFDF 235 (308)
T ss_pred cCCCCeEEEecc-CCHHHHHH
Confidence 888899999999 55554443
No 418
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.36 E-value=0.013 Score=50.22 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.4
Q ss_pred EEEeccCcchHHHHHHHHHhhh
Q 042739 214 VGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
|.|+|++|+||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999876
No 419
>PRK13949 shikimate kinase; Provisional
Probab=95.35 E-value=0.014 Score=51.04 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.8
Q ss_pred EEEEeccCcchHHHHHHHHHhhhc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.|+|+|++|+||||+++.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998864
No 420
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.35 E-value=0.029 Score=54.12 Aligned_cols=31 Identities=32% Similarity=0.450 Sum_probs=26.1
Q ss_pred CCCceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 208 SHDARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 208 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.+...+++|+|++|+|||||+..+...+...
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3457899999999999999999999876543
No 421
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.34 E-value=0.027 Score=54.60 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=25.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.+.+++++|++|+||||++..++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999887654
No 422
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.085 Score=51.33 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=24.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYF 239 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (505)
.+-|..+||+|.|||-.|++++.+-.-+|
T Consensus 384 fRNilfyGPPGTGKTm~ArelAr~SGlDY 412 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMFARELARHSGLDY 412 (630)
T ss_pred hhheeeeCCCCCCchHHHHHHHhhcCCce
Confidence 67899999999999999999998754443
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.33 E-value=0.086 Score=48.05 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFH 233 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~ 233 (505)
.+.++|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999884
No 424
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.32 E-value=0.051 Score=54.07 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..+++|+|++|+||||++.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999764
No 425
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.32 E-value=0.025 Score=56.13 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=36.5
Q ss_pred CceechhhHHHHHHhhhcc------------CCCceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 189 GFIGINSRIEEIKSLLCLE------------SHDARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 189 ~fvGR~~el~~l~~~L~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.++|.+...+.+..++... ....+.+.++|++|+|||+||+.++..+...
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 4777777777776666320 0114678999999999999999999886543
No 426
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.32 E-value=0.032 Score=59.17 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=42.2
Q ss_pred CCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc-ccceEEEe
Q 042739 187 LDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY-FQGNCFMA 246 (505)
Q Consensus 187 ~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 246 (505)
.+.++|.+..+..+...+... +.+.++|++|+|||+||+.++..+... |...+++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~ 73 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYP 73 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEe
Confidence 356899999888888877632 366699999999999999999987654 23344444
No 427
>PRK13948 shikimate kinase; Provisional
Probab=95.32 E-value=0.016 Score=51.19 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=24.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
..+.|+++|+.|+||||+++.++.++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4578999999999999999999988643
No 428
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.32 E-value=0.011 Score=51.34 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=20.0
Q ss_pred EEEeccCcchHHHHHHHHHhhh
Q 042739 214 VGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
++|+|++|+||||+|..+...+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999886
No 429
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.31 E-value=0.012 Score=52.01 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.8
Q ss_pred eEEEEeccCcchHHHHHHHHHhhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
++++|.|+.|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999999864
No 430
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.31 E-value=0.017 Score=52.95 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=26.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQG 241 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 241 (505)
.+.++.++||+|.||||.++++..++..+...
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 46688899999999999999999887766543
No 431
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.30 E-value=0.039 Score=54.88 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=25.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
....+.|.|+||.|||.|.+.+.+.++..
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~ 49 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSR 49 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhccc
Confidence 45688999999999999999999887664
No 432
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.30 E-value=0.054 Score=52.62 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=28.8
Q ss_pred HHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 199 EIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.+..+|..+-....++.|+|++|+|||+|+.+++....
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~ 120 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQ 120 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34455543334478999999999999999999987753
No 433
>PLN02459 probable adenylate kinase
Probab=95.28 E-value=0.043 Score=51.13 Aligned_cols=91 Identities=23% Similarity=0.153 Sum_probs=47.3
Q ss_pred EEEEeccCcchHHHHHHHHHhhhcccccceEEEeec---cc-ccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhcc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANV---RE-ESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGL 288 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~---~~-~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l 288 (505)
.+.|.|++|+||||+|..++..+.- .++..- +. ......+...++.. .....-.++.-....+.+.+
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~-----~~is~gdllR~ei~~~t~lg~~i~~~----~~~G~lVPdeiv~~ll~~~l 101 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGV-----PHIATGDLVREEIKSSGPLGAQLKEI----VNQGKLVPDEIIFSLLSKRL 101 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-----cEEeCcHHHHHHHhccchhHHHHHHH----HHcCCccCHHHHHHHHHHHH
Confidence 4677899999999999999887521 112100 00 00111111112222 21111112211244555555
Q ss_pred CC----CeEEEEEeCCCCCHHHHHHHhc
Q 042739 289 QR----MKVLIVLDDVHDEFTQLESLAG 312 (505)
Q Consensus 289 ~~----~~~LlVlDdv~~~~~~~~~l~~ 312 (505)
.. ...-+|||++--+..+.+.|-.
T Consensus 102 ~~~~~~~~~g~iLDGFPRt~~Qa~~Le~ 129 (261)
T PLN02459 102 EAGEEEGESGFILDGFPRTVRQAEILEG 129 (261)
T ss_pred hcccccCCceEEEeCCCCCHHHHHHHHh
Confidence 32 2456999999777777777654
No 434
>PRK14530 adenylate kinase; Provisional
Probab=95.28 E-value=0.014 Score=53.37 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=21.3
Q ss_pred EEEEeccCcchHHHHHHHHHhhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.|+|.|++|+||||+|+.++..+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999876
No 435
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.27 E-value=0.031 Score=54.44 Aligned_cols=46 Identities=20% Similarity=0.402 Sum_probs=32.0
Q ss_pred ceechhhHHHHHHhhhccC---------------CCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 190 FIGINSRIEEIKSLLCLES---------------HDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 190 fvGR~~el~~l~~~L~~~~---------------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..|-..++..|.+.+.... ...-++.|+|.+|+||||+.+.+.-..
T Consensus 373 ~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 373 IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred cccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHh
Confidence 3455566666666553211 234588999999999999999888653
No 436
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.25 E-value=0.015 Score=52.70 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=23.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...+++|+|++|+|||||+..++....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 356899999999999999999998753
No 437
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.21 E-value=0.015 Score=47.35 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=19.3
Q ss_pred EEEeccCcchHHHHHHHHHhh
Q 042739 214 VGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~ 234 (505)
|.|.|..|+|||||.+.++..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 679999999999999999965
No 438
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.21 E-value=0.029 Score=59.40 Aligned_cols=59 Identities=25% Similarity=0.293 Sum_probs=45.6
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc-ccceEEEee
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY-FQGNCFMAN 247 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~ 247 (505)
...+.++|.+..++.|...+... +.+.|+|++|+|||++|+.+++.+... +....|..+
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n 87 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN 87 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC
Confidence 44456899999999888877633 378899999999999999999886443 355666653
No 439
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.21 E-value=0.016 Score=52.34 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=22.3
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..+.++.|.|.+|.|||+++..+...+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~ 40 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG 40 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc
Confidence 4578899999999999999999988764
No 440
>PRK10646 ADP-binding protein; Provisional
Probab=95.19 E-value=0.032 Score=47.43 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=31.5
Q ss_pred hhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 195 SRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 195 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
++..++-+.|...-....+|.+.|.=|.||||+++.+++.+.
T Consensus 12 ~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 12 QATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 455566665543334456899999999999999999998753
No 441
>PLN02200 adenylate kinase family protein
Probab=95.18 E-value=0.018 Score=53.29 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.+.+++|.|++|+||||+|..++..+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998865
No 442
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.18 E-value=0.08 Score=47.87 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=23.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...+++|.|+.|+|||||++.++-...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 356999999999999999999887654
No 443
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.17 E-value=0.016 Score=50.48 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=17.8
Q ss_pred EEEeccCcchHHHHHHHHHhh
Q 042739 214 VGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~ 234 (505)
|+|+|.+|+|||||+..++..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999977
No 444
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.17 E-value=0.057 Score=50.34 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=29.2
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhccc-ccceEEEe
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRY-FQGNCFMA 246 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 246 (505)
....++.|.|++|+|||+++.+++...... -..++|+.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 346799999999999999999999876554 33455554
No 445
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.16 E-value=0.028 Score=51.08 Aligned_cols=83 Identities=17% Similarity=0.270 Sum_probs=47.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCC----ccCCCCc------
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENL----KVGTLTI------ 280 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----~~~~~~~------ 280 (505)
...++|.|.+|+|||+|+.++++....... +++. + ......+.++.+++...-..... ...+...
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~~d~~--V~~~-i--Ger~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQDADVV--VYAL-I--GERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCTTTEE--EEEE-E--SECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcccccce--eeee-c--cccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 457889999999999999999998754332 3333 1 12234455555555332111110 1111110
Q ss_pred -------hHHHHhccCCCeEEEEEeCC
Q 042739 281 -------PQNIKKGLQRMKVLIVLDDV 300 (505)
Q Consensus 281 -------~~~l~~~l~~~~~LlVlDdv 300 (505)
.+.++. +++.+|+++||+
T Consensus 90 ~~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 90 PYTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred hccchhhhHHHhh--cCCceeehhhhh
Confidence 222333 689999999999
No 446
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.15 E-value=0.1 Score=52.69 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=66.3
Q ss_pred hhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCc
Q 042739 195 SRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLK 274 (505)
Q Consensus 195 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 274 (505)
...+.+.+++. ....++.++||.|+||||..-.+...+.......+=+.+--+... .+ +.++. -+.
T Consensus 245 ~~~~~~~~~~~---~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~-~g--------I~Q~q--VN~ 310 (500)
T COG2804 245 FQLARLLRLLN---RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQL-PG--------INQVQ--VNP 310 (500)
T ss_pred HHHHHHHHHHh---CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeec-CC--------cceee--ccc
Confidence 33445555554 346799999999999999999888876554433222221100000 00 00000 001
Q ss_pred cCCCCchHHHHhccCCCeEEEEEeCCCCCHHHHHHHhcCcCCCCCCCEEEEEeCc
Q 042739 275 VGTLTIPQNIKKGLQRMKVLIVLDDVHDEFTQLESLAGVIDRFSPGSRIIITTRD 329 (505)
Q Consensus 275 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~l~~~l~~~~~~~~iliTsR~ 329 (505)
.....-...++..|+..|=+|.+..+ .+.+..+..... +.-+++++||=.
T Consensus 311 k~gltfa~~LRa~LRqDPDvImVGEI-RD~ETAeiavqA----alTGHLVlSTlH 360 (500)
T COG2804 311 KIGLTFARALRAILRQDPDVIMVGEI-RDLETAEIAVQA----ALTGHLVLSTLH 360 (500)
T ss_pred ccCCCHHHHHHHHhccCCCeEEEecc-CCHHHHHHHHHH----HhcCCeEeeecc
Confidence 11112267788899999999999999 555555544432 234466776643
No 447
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.13 E-value=0.06 Score=57.93 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=35.4
Q ss_pred HHHHHhhh-ccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 198 EEIKSLLC-LESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 198 ~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
..|..+|. .+-...+++.|+|++|+|||+|+.+++......-..++|+.
T Consensus 46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId 95 (790)
T PRK09519 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFID 95 (790)
T ss_pred HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 34555564 33345789999999999999999998876555445566765
No 448
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.13 E-value=0.073 Score=53.77 Aligned_cols=89 Identities=16% Similarity=0.238 Sum_probs=51.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCC----ccCCCCc-----
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENL----KVGTLTI----- 280 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----~~~~~~~----- 280 (505)
..+.++|.|.+|+|||+|+..++.....+.+..+.+..+. .....+.+++++++..-..... ...+...
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liG--ER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVG--ERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEec--cCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3568899999999999999999887665544333333222 2234555555555543211110 0011111
Q ss_pred ----hHHHHhcc---CCCeEEEEEeCC
Q 042739 281 ----PQNIKKGL---QRMKVLIVLDDV 300 (505)
Q Consensus 281 ----~~~l~~~l---~~~~~LlVlDdv 300 (505)
.-.+.+++ +++++||++|++
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecch
Confidence 11233444 678999999999
No 449
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.13 E-value=0.026 Score=51.22 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=26.2
Q ss_pred CCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 208 SHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 208 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
..+.++++|+|..|+|||||..++.+....
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 356899999999999999999999987543
No 450
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=95.13 E-value=0.47 Score=47.08 Aligned_cols=50 Identities=24% Similarity=0.326 Sum_probs=41.6
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhh
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.....+||-...++++.+.+..-.+....|.|.|..|.||+.+|..+...
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~ 124 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHAL 124 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHh
Confidence 44567999999999998888765556678889999999999999999843
No 451
>PRK13946 shikimate kinase; Provisional
Probab=95.12 E-value=0.018 Score=51.18 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.+.|++.|++|+||||+++.++.++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999999873
No 452
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.11 E-value=0.045 Score=49.14 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.5
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
..|+|.|..|+||||+++.+++.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999988754
No 453
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.11 E-value=0.019 Score=51.11 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=24.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYF 239 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (505)
.+.++|+|++|+|||||+..+.......|
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~ 30 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAF 30 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcce
Confidence 36899999999999999999988864434
No 454
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.11 E-value=0.064 Score=50.20 Aligned_cols=105 Identities=12% Similarity=0.206 Sum_probs=58.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCC-ccCCCCchHHHHhcc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENL-KVGTLTIPQNIKKGL 288 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~~~~~~~~l~~~l 288 (505)
....|.|+|+.|+||||-.......+-.+++..+.-. . ++.+....--+.+..+.. ......-...|+..|
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTI-----E---DPIE~vh~skkslI~QREvG~dT~sF~~aLraAL 195 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTI-----E---DPIEYVHESKKSLINQREVGRDTLSFANALRAAL 195 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEe-----c---CchHhhhcchHhhhhHHHhcccHHHHHHHHHHHh
Confidence 3568999999999999866666666555544443322 1 112221111111111111 111222277889999
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHhcCcCCCCCCCEEEEEe
Q 042739 289 QRMKVLIVLDDVHDEFTQLESLAGVIDRFSPGSRIIITT 327 (505)
Q Consensus 289 ~~~~~LlVlDdv~~~~~~~~~l~~~l~~~~~~~~iliTs 327 (505)
+..|=+|++-.+ .+.+....-+.. ..-+++++.|
T Consensus 196 ReDPDVIlvGEm-RD~ETi~~ALtA----AETGHLV~~T 229 (353)
T COG2805 196 REDPDVILVGEM-RDLETIRLALTA----AETGHLVFGT 229 (353)
T ss_pred hcCCCEEEEecc-ccHHHHHHHHHH----HhcCCEEEEe
Confidence 999999999999 555555543332 2344555544
No 455
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.11 E-value=0.02 Score=45.37 Aligned_cols=22 Identities=41% Similarity=0.356 Sum_probs=20.1
Q ss_pred ceEEEEeccCcchHHHHHHHHH
Q 042739 211 ARIVGIWGMGGIGKTTIASVVF 232 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~ 232 (505)
...++|.|++|+|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 5689999999999999999976
No 456
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.10 E-value=0.018 Score=53.31 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=19.7
Q ss_pred EeccCcchHHHHHHHHHhhhccc
Q 042739 216 IWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 216 I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
|.||+|+||||++..+.+.+...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999887654
No 457
>PRK13768 GTPase; Provisional
Probab=95.10 E-value=0.026 Score=52.97 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=23.4
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.+++|.|++|+||||++..++..+...
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~ 29 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ 29 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc
Confidence 478899999999999999999877554
No 458
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.09 E-value=0.095 Score=53.48 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=23.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.++++++|+.|+||||++..++..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 57999999999999999999998764
No 459
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.08 E-value=0.063 Score=54.40 Aligned_cols=89 Identities=19% Similarity=0.265 Sum_probs=50.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCC----ccCCCCc-----
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENL----KVGTLTI----- 280 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----~~~~~~~----- 280 (505)
..+.++|.|.+|+|||+|+.+++.....++...+.+..+. .....+.++...++..-..... ...+...
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liG--ER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVG--ERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCC--cchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 3568899999999999999999988764433333332221 2234455555555443111111 0111111
Q ss_pred ----hHHHHhcc---CCCeEEEEEeCC
Q 042739 281 ----PQNIKKGL---QRMKVLIVLDDV 300 (505)
Q Consensus 281 ----~~~l~~~l---~~~~~LlVlDdv 300 (505)
.-.+.+++ .++++||++|++
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccc
Confidence 11233443 378999999999
No 460
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.04 E-value=0.024 Score=48.16 Aligned_cols=25 Identities=32% Similarity=0.656 Sum_probs=22.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..+++|+|.+|+||||+.+.+...+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999999888776
No 461
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.03 E-value=0.37 Score=49.07 Aligned_cols=71 Identities=14% Similarity=0.225 Sum_probs=42.3
Q ss_pred echhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhc-ccccceEEEeecccccccccHHHHHHHHHHHHh
Q 042739 192 GINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQIS-RYFQGNCFMANVREESNKLGVIRVRDEVISQVL 269 (505)
Q Consensus 192 GR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 269 (505)
|-..-+..|.+++. +-....++.|.|.+|+|||++|..++.... .....++|+. -......+...++....
T Consensus 176 gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS------lEm~~~~l~~Rl~~~~~ 247 (421)
T TIGR03600 176 GLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS------LEMSAEQLGERLLASKS 247 (421)
T ss_pred ceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHHHHc
Confidence 33333444444443 223466899999999999999999997754 2222344443 22344555555555543
No 462
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.03 E-value=0.022 Score=48.96 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.1
Q ss_pred EEEEeccCcchHHHHHHHHHhhhccc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
+++|+|+.|+|||||+..+...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999987655
No 463
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.02 E-value=0.02 Score=49.38 Aligned_cols=117 Identities=17% Similarity=0.215 Sum_probs=58.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCc-hHHHHhccC
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTI-PQNIKKGLQ 289 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~~l~~~l~ 289 (505)
..+++|.|+.|.|||||++.++..+.. ....+++.... ... ..... ....+.- .......+. .-.+...+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~~-~~~-~~~~~----~~~~i~~-~~qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKD-IAK-LPLEE----LRRRIGY-VPQLSGGQRQRVALARALL 96 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEE-ccc-CCHHH----HHhceEE-EeeCCHHHHHHHHHHHHHh
Confidence 468999999999999999999876543 23344443110 100 00000 0000000 000111111 233445555
Q ss_pred CCeEEEEEeCCC--CCHHHHHHHhcCcCCC-CCCCEEEEEeCcchhhcc
Q 042739 290 RMKVLIVLDDVH--DEFTQLESLAGVIDRF-SPGSRIIITTRDKRVLDK 335 (505)
Q Consensus 290 ~~~~LlVlDdv~--~~~~~~~~l~~~l~~~-~~~~~iliTsR~~~~~~~ 335 (505)
..+-++++|+.- -+......+...+... ..+..++++|.+......
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 567899999984 2233333333322211 224568888876654443
No 464
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.02 E-value=0.031 Score=57.81 Aligned_cols=48 Identities=15% Similarity=0.032 Sum_probs=34.3
Q ss_pred HHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc-ccceEEEe
Q 042739 199 EIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY-FQGNCFMA 246 (505)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 246 (505)
.|.+.|..+-...+++.|.|++|+|||+||.+++..-..+ -..++|+.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs 57 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVT 57 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3444554344557899999999999999999998764333 34566665
No 465
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.01 E-value=0.025 Score=53.49 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=28.2
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
++++|+|.+|+|||||+.+++..+.++. .+..+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 4799999999999999999999988776 344443
No 466
>PRK13975 thymidylate kinase; Provisional
Probab=94.99 E-value=0.021 Score=51.34 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.6
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
..|+|.|+.|+||||+++.++.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999998764
No 467
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.99 E-value=0.019 Score=51.26 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=21.8
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..++|.|+.|+|||||++.++....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4789999999999999999987643
No 468
>PRK10436 hypothetical protein; Provisional
Probab=94.99 E-value=0.072 Score=54.29 Aligned_cols=114 Identities=13% Similarity=0.155 Sum_probs=61.1
Q ss_pred hHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCcc
Q 042739 196 RIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKV 275 (505)
Q Consensus 196 el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 275 (505)
.++.+.+++. .....+.|+|+.|.||||....+...+.... ..++.. .++... .+.. +.+.. -...
T Consensus 206 ~~~~l~~~~~---~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~-~~i~Ti-----EDPvE~--~l~g-i~Q~~--v~~~ 271 (462)
T PRK10436 206 QLAQFRQALQ---QPQGLILVTGPTGSGKTVTLYSALQTLNTAQ-INICSV-----EDPVEI--PLAG-INQTQ--IHPK 271 (462)
T ss_pred HHHHHHHHHH---hcCCeEEEECCCCCChHHHHHHHHHhhCCCC-CEEEEe-----cCCccc--cCCC-cceEe--eCCc
Confidence 4455555554 2346899999999999998877776653322 222211 111110 0000 00000 0000
Q ss_pred CCCCchHHHHhccCCCeEEEEEeCCCCCHHHHHHHhcCcCCCCCCCEEEEEeC
Q 042739 276 GTLTIPQNIKKGLQRMKVLIVLDDVHDEFTQLESLAGVIDRFSPGSRIIITTR 328 (505)
Q Consensus 276 ~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~l~~~l~~~~~~~~iliTsR 328 (505)
........++..|+..+=.|++.++ .+.+........ ...+++++||=
T Consensus 272 ~g~~f~~~lr~~LR~dPDvI~vGEI-RD~eta~~al~A----A~TGHlVlsTl 319 (462)
T PRK10436 272 AGLTFQRVLRALLRQDPDVIMVGEI-RDGETAEIAIKA----AQTGHLVLSTL 319 (462)
T ss_pred cCcCHHHHHHHHhcCCCCEEEECCC-CCHHHHHHHHHH----HHcCCcEEEee
Confidence 1122377888899999999999999 555555543332 22334566653
No 469
>PRK06761 hypothetical protein; Provisional
Probab=94.98 E-value=0.029 Score=52.98 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=24.2
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
+++.|.|++|+||||+++.++..+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 589999999999999999999987653
No 470
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.97 E-value=0.048 Score=44.41 Aligned_cols=41 Identities=17% Similarity=0.346 Sum_probs=29.7
Q ss_pred hhHHHHHHhhhcc-CCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 195 SRIEEIKSLLCLE-SHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 195 ~el~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..++.|...+... ...+-++.++|++|+|||-+++.+++.+
T Consensus 36 ~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 36 VVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3444555555432 3346788999999999999999998873
No 471
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.96 E-value=0.047 Score=49.04 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.7
Q ss_pred EEEEeccCcchHHHHHHHHHhhhcc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
+|+|.|+.|+||||+++.++..+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998754
No 472
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.95 E-value=0.095 Score=52.80 Aligned_cols=89 Identities=17% Similarity=0.242 Sum_probs=50.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCC----ccCCCCc-----
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENL----KVGTLTI----- 280 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----~~~~~~~----- 280 (505)
..+.++|.|.+|+|||+|+..++.....+....+.+..+. .....+.+++.+++..-..... ...+...
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIG--ER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVG--ERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEec--CCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3568899999999999999999987655444333333232 2233455555555432111110 0111111
Q ss_pred ----hHHHHhcc---CCCeEEEEEeCC
Q 042739 281 ----PQNIKKGL---QRMKVLIVLDDV 300 (505)
Q Consensus 281 ----~~~l~~~l---~~~~~LlVlDdv 300 (505)
.-.+.+++ +++++||++|++
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecch
Confidence 12233444 468999999999
No 473
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.95 E-value=0.08 Score=47.51 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=22.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+++|.|+.|.|||||.+.++...
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999999998755
No 474
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.034 Score=50.39 Aligned_cols=50 Identities=28% Similarity=0.389 Sum_probs=36.3
Q ss_pred ceechhhHHHHHHhhhc-----------cCCCceEEEEeccCcchHHHHHHHHHhhhcccc
Q 042739 190 FIGINSRIEEIKSLLCL-----------ESHDARIVGIWGMGGIGKTTIASVVFHQISRYF 239 (505)
Q Consensus 190 fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (505)
.=|.+-..+++++.... +-+.++-|.++|++|.|||-||+.++++....|
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 44566666666665431 224577889999999999999999999866544
No 475
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.91 E-value=0.025 Score=53.96 Aligned_cols=28 Identities=32% Similarity=0.565 Sum_probs=24.0
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYF 239 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (505)
+.|+|+|-||+||||++..++..+...-
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G 28 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG 28 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC
Confidence 4688999999999999999998876543
No 476
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.91 E-value=0.024 Score=49.81 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.3
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..|+|.|+.|.|||||++.++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4689999999999999999998753
No 477
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.90 E-value=0.022 Score=61.96 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=21.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.+.++|+|+.|.|||||.+.+.-.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 478999999999999999988754
No 478
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.89 E-value=0.08 Score=55.99 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=22.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
.++..|+|.+|.||||++..+...+..
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~ 193 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQ 193 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 358899999999999999998876533
No 479
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=94.89 E-value=1.2 Score=45.65 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=35.3
Q ss_pred CceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 189 GFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 189 ~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.++|....+..+.+.+..-......+.|+|..|.||+++|+.+...-
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s 186 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASS 186 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcC
Confidence 47888887777766554333445677889999999999999887653
No 480
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=94.89 E-value=0.044 Score=45.95 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=34.9
Q ss_pred chhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 193 INSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 193 R~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.+.+..++-+.|...-....+|.+.|.=|.|||||++.+++.+.
T Consensus 7 ~~~~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 7 DEEATLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CHHHHHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 34566677777765555667999999999999999999998754
No 481
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.88 E-value=0.019 Score=52.59 Aligned_cols=24 Identities=21% Similarity=-0.031 Sum_probs=21.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFH 233 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~ 233 (505)
..++++|+|+.|.||||+.+.++-
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999998876
No 482
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.86 E-value=0.12 Score=51.86 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+++++|+.|+||||++..++.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999888753
No 483
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.82 E-value=0.033 Score=49.13 Aligned_cols=119 Identities=14% Similarity=0.087 Sum_probs=59.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHH--HHH-hCCCC--ccCCCCc-----
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVI--SQV-LGENL--KVGTLTI----- 280 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll--~~~-~~~~~--~~~~~~~----- 280 (505)
...|.|+|..|-||||+|.-.+.+...+-..+.++--+... ...+-...+..+- ... .+... ...+.+.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~-~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGA-WSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-CccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 45888999999999999999988765443333333222211 1122223222210 000 00100 0001000
Q ss_pred ---hHHHHhccC-CCeEEEEEeCCC----CCHHHHHHHhcCcCCCCCCCEEEEEeCcc
Q 042739 281 ---PQNIKKGLQ-RMKVLIVLDDVH----DEFTQLESLAGVIDRFSPGSRIIITTRDK 330 (505)
Q Consensus 281 ---~~~l~~~l~-~~~~LlVlDdv~----~~~~~~~~l~~~l~~~~~~~~iliTsR~~ 330 (505)
....++.+. ++-=|||||.+- ...-..+.+...+...+.+..||+|.|+.
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 122333443 344599999982 11111233333344446788999999986
No 484
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=94.82 E-value=0.21 Score=44.54 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=29.1
Q ss_pred eechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhh
Q 042739 191 IGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 191 vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.|.+.-++.|.+.+. ....+.++|.+|+|||||...+...
T Consensus 111 ~gi~eL~~~l~~~l~----~~~~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 111 WGVEELINAIKKLAK----KGGDVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred CCHHHHHHHHHHHhh----cCCcEEEEcCCCCCHHHHHHHHHHh
Confidence 345555555555552 2346889999999999999999875
No 485
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.81 E-value=0.095 Score=43.48 Aligned_cols=25 Identities=24% Similarity=0.108 Sum_probs=21.0
Q ss_pred EEEEeccCcchHHHHHHHHHhhhcc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
.+.|.|+.|.|||+.+..++.....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 4679999999999999988877543
No 486
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=94.81 E-value=0.14 Score=45.48 Aligned_cols=23 Identities=30% Similarity=0.130 Sum_probs=17.9
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
+.+.|.|+.|.|||+.+..++.+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~ 47 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALE 47 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHH
Confidence 57889999999999955555443
No 487
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.81 E-value=0.026 Score=54.23 Aligned_cols=87 Identities=20% Similarity=0.242 Sum_probs=48.9
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhccccc--ceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccC
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYFQ--GNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQ 289 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~ 289 (505)
+.+.|+|+.|+||||++..++..+....+ ..+-+.+..+..... .... .+. .........+.++..|+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~------~~~v-~~~---~~~~~~~~~~~l~~aLR 202 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAA------PNVV-QLR---TSDDAISMTRLLKATLR 202 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCC------CCEE-EEE---ecCCCCCHHHHHHHHhc
Confidence 46789999999999999999988754321 122222111110000 0000 000 00011123677888888
Q ss_pred CCeEEEEEeCCCCCHHHHHH
Q 042739 290 RMKVLIVLDDVHDEFTQLES 309 (505)
Q Consensus 290 ~~~~LlVlDdv~~~~~~~~~ 309 (505)
..+=.||+..+ .+.+.+..
T Consensus 203 ~~pD~iivGEi-R~~ea~~~ 221 (299)
T TIGR02782 203 LRPDRIIVGEV-RGGEALDL 221 (299)
T ss_pred CCCCEEEEecc-CCHHHHHH
Confidence 88989999999 55555544
No 488
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.79 E-value=0.01 Score=52.90 Aligned_cols=21 Identities=33% Similarity=0.091 Sum_probs=18.7
Q ss_pred EEEEeccCcchHHHHHHHHHh
Q 042739 213 IVGIWGMGGIGKTTIASVVFH 233 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~ 233 (505)
++.|+|+.|.||||+++.++-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999999884
No 489
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.79 E-value=0.15 Score=55.66 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=22.6
Q ss_pred ccchHHHHHHHHHhcCcceeecccc
Q 042739 28 RNGFTSHLAAALHRKQIQFFIDDEE 52 (505)
Q Consensus 28 ~~~~~~~l~~~L~~~g~~~~~d~~~ 52 (505)
+..|++....+|+++|+..-+|+.+
T Consensus 177 R~~wa~~~N~~l~~~g~~~rid~rS 201 (744)
T TIGR02768 177 REQWAELANEHLAEAGLDLRIDHRS 201 (744)
T ss_pred HHHHHHHHHHHHHHcCCCceEcccc
Confidence 4679999999999999999999974
No 490
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.2 Score=51.95 Aligned_cols=174 Identities=18% Similarity=0.233 Sum_probs=92.1
Q ss_pred CCceechhhHHHHHHhhhc-----------cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeeccccccccc
Q 042739 188 DGFIGINSRIEEIKSLLCL-----------ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLG 256 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 256 (505)
..+-|-...+..+...... +...++-+.++|++|+|||-|+++++++.. ..+|..+.
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~----a~~~~i~~-------- 251 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG----AFLFLING-------- 251 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC----ceeEeccc--------
Confidence 3455666677776665531 113367888999999999999999998864 22333311
Q ss_pred HHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCC-eEEEEEeCCCC-----------CHHHHHHHhcCcCCCCCC--CE
Q 042739 257 VIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRM-KVLIVLDDVHD-----------EFTQLESLAGVIDRFSPG--SR 322 (505)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~-----------~~~~~~~l~~~l~~~~~~--~~ 322 (505)
.++++...++. .......+.+....+ +.+|.+|++.. +......+...+....+. ..
T Consensus 252 -----peli~k~~gEt----e~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vi 322 (693)
T KOG0730|consen 252 -----PELISKFPGET----ESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVI 322 (693)
T ss_pred -----HHHHHhcccch----HHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEE
Confidence 12233322221 111133444555566 88999998830 112223333333333332 33
Q ss_pred EEEEeCcchhh----cccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCh
Q 042739 323 IIITTRDKRVL----DKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNP 385 (505)
Q Consensus 323 iliTsR~~~~~----~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (505)
+|-+|++...+ ......+.+.+.-.+..+-.++++......+.. .......++..+.|+-
T Consensus 323 vl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~---~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 323 VLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL---SDVDLEDIAVSTHGYV 386 (693)
T ss_pred EEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc---chhhHHHHHHHccchh
Confidence 34455544221 111234566777666666666666555222222 2234556777777774
No 491
>COG4240 Predicted kinase [General function prediction only]
Probab=94.77 E-value=0.076 Score=47.51 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=27.7
Q ss_pred CCCceEEEEeccCcchHHHHHHHHHhhhcccc
Q 042739 208 SHDARIVGIWGMGGIGKTTIASVVFHQISRYF 239 (505)
Q Consensus 208 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (505)
.+++-+++|+|+.|+||||++..+...+...+
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg 78 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKG 78 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhc
Confidence 34577999999999999999999998876665
No 492
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.77 E-value=0.036 Score=57.29 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=25.2
Q ss_pred cCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 207 ESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 207 ~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..++..+|+|.|++|+||||||+.++..+
T Consensus 61 ~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 61 KNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred cCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 34567899999999999999999998765
No 493
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.76 E-value=0.029 Score=53.37 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=23.6
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..+.+|+|.|+.|+||||||+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999987766554
No 494
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.73 E-value=0.031 Score=47.65 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=21.9
Q ss_pred EEEeccCcchHHHHHHHHHhhhccc
Q 042739 214 VGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
+++.|.+|+||||++..++..+...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~ 26 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRAR 26 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC
Confidence 6789999999999999999876544
No 495
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.73 E-value=0.032 Score=50.64 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...+++|+|++|+|||||++.++--
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 3568999999999999999999853
No 496
>PRK04182 cytidylate kinase; Provisional
Probab=94.73 E-value=0.027 Score=49.74 Aligned_cols=24 Identities=38% Similarity=0.564 Sum_probs=21.8
Q ss_pred EEEEeccCcchHHHHHHHHHhhhc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
+|+|.|+.|+||||+|+.++.++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998863
No 497
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.72 E-value=0.033 Score=50.85 Aligned_cols=27 Identities=33% Similarity=0.634 Sum_probs=23.3
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
++|+|.|-||+||||++..++..+...
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~ 27 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEM 27 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHC
Confidence 468899999999999999999877654
No 498
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.72 E-value=0.025 Score=54.68 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=21.9
Q ss_pred eEEEEeccCcchHHHHHHHHHhhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.++.+.|++|+||||+|++++.++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999998876
No 499
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.71 E-value=0.026 Score=49.40 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=21.3
Q ss_pred EEEEeccCcchHHHHHHHHHhhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
+|+|+|+.|+||||+|+.++..+
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998875
No 500
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.71 E-value=0.039 Score=49.16 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=23.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
...++|.|+.|.|||||++.++..+..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 468999999999999999998877653
Done!