Query 042739
Match_columns 505
No_of_seqs 430 out of 2956
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 15:37:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 8.7E-45 3E-49 316.5 11.4 176 5-180 25-202 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 4.8E-44 1.7E-48 307.4 12.3 171 11-183 4-175 (176)
3 2a5y_B CED-4; apoptosis; HET: 100.0 1.6E-39 5.3E-44 339.4 21.1 298 191-501 131-472 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-36 5.3E-41 348.0 26.5 303 185-500 121-452 (1249)
5 1z6t_A APAF-1, apoptotic prote 100.0 2.6E-35 8.9E-40 311.7 24.4 299 185-497 121-449 (591)
6 1vt4_I APAF-1 related killer D 100.0 9.6E-35 3.3E-39 308.2 18.5 278 188-493 128-436 (1221)
7 3h16_A TIR protein; bacteria T 100.0 2.2E-31 7.6E-36 228.8 5.2 121 10-131 15-135 (154)
8 3ub2_A TOLL/interleukin-1 rece 99.9 2.1E-26 7.1E-31 194.5 0.7 107 9-117 4-112 (146)
9 2js7_A Myeloid differentiation 99.9 3.6E-23 1.2E-27 177.6 3.6 102 11-114 12-117 (160)
10 2j67_A TOLL like receptor 10; 99.9 6.3E-23 2.2E-27 178.8 4.7 103 10-114 30-136 (178)
11 1fyx_A TOLL-like receptor 2; b 99.9 3.1E-23 1E-27 176.4 2.5 98 12-111 2-103 (149)
12 2qen_A Walker-type ATPase; unk 99.9 2E-20 6.7E-25 184.3 20.1 287 185-494 9-349 (350)
13 1t3g_A X-linked interleukin-1 99.8 2E-21 7E-26 166.5 8.3 99 14-112 1-112 (159)
14 2fna_A Conserved hypothetical 99.8 1.9E-19 6.6E-24 177.7 20.8 282 185-493 10-356 (357)
15 1w5s_A Origin recognition comp 99.8 9.4E-18 3.2E-22 169.0 18.9 294 185-488 19-386 (412)
16 2qby_B CDC6 homolog 3, cell di 99.7 5.8E-15 2E-19 147.1 24.0 277 187-478 19-339 (384)
17 2qby_A CDC6 homolog 1, cell di 99.6 3.9E-15 1.3E-19 148.3 18.4 282 185-477 17-347 (386)
18 1fnn_A CDC6P, cell division co 99.6 2.6E-14 8.9E-19 142.6 22.5 305 185-500 14-387 (389)
19 2v1u_A Cell division control p 99.6 5.9E-14 2E-18 139.8 20.1 283 185-478 16-351 (387)
20 3j0a_A TOLL-like receptor 5; m 99.6 1.1E-15 3.8E-20 167.8 7.9 102 11-114 666-774 (844)
21 1njg_A DNA polymerase III subu 99.5 8.8E-13 3E-17 122.2 16.5 199 185-395 20-231 (250)
22 2chg_A Replication factor C sm 99.4 4.7E-12 1.6E-16 115.6 15.3 188 185-393 14-205 (226)
23 1sxj_B Activator 1 37 kDa subu 99.3 3.5E-11 1.2E-15 116.6 14.4 186 185-391 18-209 (323)
24 1hqc_A RUVB; extended AAA-ATPa 99.2 4.4E-10 1.5E-14 108.9 20.3 256 185-482 9-302 (324)
25 1iqp_A RFCS; clamp loader, ext 99.2 2.9E-10 9.9E-15 110.2 15.7 190 185-395 22-215 (327)
26 2chq_A Replication factor C sm 99.1 2E-09 7E-14 103.8 17.5 185 185-393 14-205 (319)
27 3pfi_A Holliday junction ATP-d 99.1 2.8E-09 9.5E-14 103.9 18.4 257 185-484 26-319 (338)
28 1jr3_A DNA polymerase III subu 99.1 1.6E-09 5.6E-14 107.0 15.6 197 185-393 13-222 (373)
29 3te6_A Regulatory protein SIR3 98.9 2.3E-08 7.9E-13 95.1 15.5 166 190-360 22-211 (318)
30 1sxj_D Activator 1 41 kDa subu 98.9 5.6E-08 1.9E-12 95.1 18.5 197 185-392 34-235 (353)
31 3bos_A Putative DNA replicatio 98.9 7.8E-09 2.7E-13 95.3 11.2 178 185-394 25-219 (242)
32 1jbk_A CLPB protein; beta barr 98.9 9.9E-09 3.4E-13 90.8 10.5 50 185-236 19-68 (195)
33 3uk6_A RUVB-like 2; hexameric 98.8 3.4E-08 1.2E-12 97.4 14.3 204 187-394 43-305 (368)
34 1sxj_A Activator 1 95 kDa subu 98.8 6E-08 2.1E-12 99.8 15.6 193 185-392 36-252 (516)
35 2z4s_A Chromosomal replication 98.8 2.2E-08 7.6E-13 100.7 11.7 187 186-393 103-307 (440)
36 3d8b_A Fidgetin-like protein 1 98.8 2.5E-07 8.6E-12 90.5 18.6 201 164-394 64-297 (357)
37 1sxj_E Activator 1 40 kDa subu 98.8 8.3E-08 2.8E-12 94.0 14.1 200 185-393 11-238 (354)
38 3pvs_A Replication-associated 98.7 2.3E-07 8E-12 93.2 17.3 181 185-393 23-216 (447)
39 3h4m_A Proteasome-activating n 98.7 1.4E-07 4.7E-12 89.4 14.8 182 185-393 14-232 (285)
40 1d2n_A N-ethylmaleimide-sensit 98.7 4.7E-07 1.6E-11 85.1 16.9 170 188-384 33-229 (272)
41 1l8q_A Chromosomal replication 98.7 1.9E-07 6.5E-12 90.2 13.3 185 185-392 8-208 (324)
42 1in4_A RUVB, holliday junction 98.7 2E-06 7E-11 83.2 20.5 265 186-487 23-319 (334)
43 3eie_A Vacuolar protein sortin 98.7 4.2E-07 1.4E-11 87.7 15.4 185 185-395 15-231 (322)
44 2qz4_A Paraplegin; AAA+, SPG7, 98.6 1.3E-06 4.3E-11 81.5 17.4 184 186-394 4-224 (262)
45 2qp9_X Vacuolar protein sortin 98.6 6.1E-07 2.1E-11 87.7 15.5 184 185-394 48-263 (355)
46 1a5t_A Delta prime, HOLB; zinc 98.6 9.4E-07 3.2E-11 85.6 16.6 181 194-391 8-204 (334)
47 3syl_A Protein CBBX; photosynt 98.6 5.8E-08 2E-12 93.2 7.7 147 190-360 33-217 (309)
48 2zan_A Vacuolar protein sortin 98.6 1E-06 3.5E-11 88.7 16.8 187 185-395 131-348 (444)
49 3b9p_A CG5977-PA, isoform A; A 98.6 8.9E-07 3.1E-11 84.3 15.6 184 185-393 18-234 (297)
50 3u61_B DNA polymerase accessor 98.6 5.1E-07 1.7E-11 87.2 13.0 182 185-392 23-216 (324)
51 3vfd_A Spastin; ATPase, microt 98.6 2.1E-06 7.1E-11 85.1 17.7 186 185-394 112-328 (389)
52 2p65_A Hypothetical protein PF 98.5 4.6E-07 1.6E-11 79.5 11.0 50 186-237 20-69 (187)
53 1xwi_A SKD1 protein; VPS4B, AA 98.5 3.8E-06 1.3E-10 80.8 18.1 185 186-395 10-226 (322)
54 1sxj_C Activator 1 40 kDa subu 98.5 2.1E-06 7.2E-11 83.4 16.2 184 187-391 24-211 (340)
55 3n70_A Transport activator; si 98.5 4.4E-07 1.5E-11 76.5 8.3 114 189-330 2-116 (145)
56 3pxg_A Negative regulator of g 98.4 1.9E-06 6.6E-11 87.3 12.1 149 185-360 177-338 (468)
57 3cf0_A Transitional endoplasmi 98.3 5.1E-06 1.7E-10 79.2 13.6 177 186-387 13-223 (301)
58 3hu3_A Transitional endoplasmi 98.3 2.1E-06 7E-11 87.2 11.4 180 188-393 204-416 (489)
59 1qvr_A CLPB protein; coiled co 98.3 2.4E-06 8.2E-11 93.4 11.6 50 185-236 167-216 (854)
60 1ojl_A Transcriptional regulat 98.3 4.1E-06 1.4E-10 79.8 11.8 48 189-236 3-50 (304)
61 2gno_A DNA polymerase III, gam 98.3 4.7E-06 1.6E-10 79.2 12.1 147 192-360 1-152 (305)
62 4fcw_A Chaperone protein CLPB; 98.3 3.8E-06 1.3E-10 80.4 11.1 49 189-237 18-73 (311)
63 1ofh_A ATP-dependent HSL prote 98.3 5.6E-06 1.9E-10 79.1 11.9 48 189-236 16-75 (310)
64 4b4t_J 26S protease regulatory 98.2 2.8E-05 9.4E-10 75.9 16.0 173 186-385 146-354 (405)
65 2bjv_A PSP operon transcriptio 98.2 3.5E-06 1.2E-10 78.7 8.3 50 188-237 6-55 (265)
66 4b4t_L 26S protease subunit RP 98.1 6.4E-05 2.2E-09 74.5 16.7 173 186-385 179-387 (437)
67 1lv7_A FTSH; alpha/beta domain 98.1 1.1E-05 3.6E-10 75.0 10.6 182 185-392 9-225 (257)
68 1r6b_X CLPA protein; AAA+, N-t 98.1 1.4E-05 4.7E-10 86.4 12.7 155 185-360 183-362 (758)
69 3ec2_A DNA replication protein 98.1 7.8E-06 2.7E-10 71.4 8.8 50 187-236 9-63 (180)
70 3pxi_A Negative regulator of g 98.1 1.2E-05 4.1E-10 86.8 12.1 149 185-360 177-338 (758)
71 2c9o_A RUVB-like 1; hexameric 98.1 2.8E-05 9.6E-10 78.6 13.7 97 293-392 297-410 (456)
72 2r62_A Cell division protease 98.1 3.8E-06 1.3E-10 78.6 6.4 53 185-237 8-70 (268)
73 4b4t_M 26S protease regulatory 98.1 4.8E-05 1.6E-09 75.3 14.2 171 186-384 179-386 (434)
74 4b4t_K 26S protease regulatory 98.1 3.1E-05 1E-09 76.6 12.7 52 187-238 171-233 (428)
75 3co5_A Putative two-component 98.1 2.4E-06 8.2E-11 71.7 4.1 48 189-236 5-52 (143)
76 4b4t_H 26S protease regulatory 98.0 0.00017 5.8E-09 71.4 17.6 172 187-385 208-415 (467)
77 2w58_A DNAI, primosome compone 98.0 4.9E-06 1.7E-10 74.2 5.4 61 186-246 23-89 (202)
78 1eiw_A Hypothetical protein MT 98.0 1.2E-05 4.1E-10 63.1 6.1 72 14-109 3-74 (111)
79 2ce7_A Cell division protein F 97.9 5.4E-05 1.8E-09 76.2 11.8 173 187-385 15-221 (476)
80 4b4t_I 26S protease regulatory 97.9 0.00011 3.9E-09 71.8 13.6 173 187-385 181-388 (437)
81 3pxi_A Negative regulator of g 97.8 7E-05 2.4E-09 80.8 11.8 149 188-360 491-675 (758)
82 3cf2_A TER ATPase, transitiona 97.8 5E-05 1.7E-09 80.9 10.1 173 188-386 204-408 (806)
83 2kjq_A DNAA-related protein; s 97.8 1.3E-05 4.5E-10 67.5 4.2 28 210-237 35-62 (149)
84 1um8_A ATP-dependent CLP prote 97.6 0.00018 6.2E-09 70.7 10.0 26 211-236 72-97 (376)
85 1ixz_A ATP-dependent metallopr 97.6 0.00062 2.1E-08 62.8 13.0 52 185-236 13-74 (254)
86 2r44_A Uncharacterized protein 97.6 0.00035 1.2E-08 67.2 11.8 47 188-238 27-73 (331)
87 3t15_A Ribulose bisphosphate c 97.6 0.00013 4.5E-09 69.0 8.5 28 210-237 35-62 (293)
88 1iy2_A ATP-dependent metallopr 97.6 0.00052 1.8E-08 64.3 12.4 52 185-236 37-98 (278)
89 2dhr_A FTSH; AAA+ protein, hex 97.6 0.0017 5.7E-08 65.8 16.2 176 185-385 28-236 (499)
90 3nbx_X ATPase RAVA; AAA+ ATPas 97.5 0.00042 1.4E-08 70.2 10.7 45 189-237 23-67 (500)
91 1ypw_A Transitional endoplasmi 97.5 0.00038 1.3E-08 75.2 10.9 151 187-360 203-385 (806)
92 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00018 6E-09 77.7 8.3 49 188-236 458-513 (758)
93 3m6a_A ATP-dependent protease 97.4 0.00078 2.7E-08 69.4 11.4 49 190-238 83-135 (543)
94 1qvr_A CLPB protein; coiled co 97.4 0.00027 9.3E-09 77.1 8.3 49 189-237 559-614 (854)
95 1jr3_D DNA polymerase III, del 97.4 0.0027 9.2E-08 61.4 14.3 157 210-391 17-184 (343)
96 2qgz_A Helicase loader, putati 97.3 0.00079 2.7E-08 64.0 9.9 52 195-246 135-188 (308)
97 2x8a_A Nuclear valosin-contain 97.2 0.004 1.4E-07 58.0 12.6 124 214-360 47-191 (274)
98 2cvh_A DNA repair and recombin 97.0 0.0018 6.2E-08 58.0 8.2 25 209-233 18-42 (220)
99 2b8t_A Thymidine kinase; deoxy 96.9 0.00055 1.9E-08 61.5 3.4 111 210-330 11-126 (223)
100 3cf2_A TER ATPase, transitiona 96.8 0.0011 3.9E-08 70.6 6.3 171 188-384 477-682 (806)
101 3hyn_A Putative signal transdu 96.8 0.0075 2.6E-07 50.8 9.8 105 15-124 5-132 (189)
102 2orw_A Thymidine kinase; TMTK, 96.8 0.00071 2.4E-08 59.0 3.4 109 212-330 4-113 (184)
103 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.00097 3.3E-08 62.8 4.1 24 211-234 123-146 (331)
104 3sr0_A Adenylate kinase; phosp 96.7 0.0013 4.3E-08 58.5 4.7 90 213-312 2-95 (206)
105 3hr8_A Protein RECA; alpha and 96.7 0.0025 8.5E-08 61.5 7.1 49 198-246 47-96 (356)
106 1u0j_A DNA replication protein 96.7 0.0039 1.3E-07 57.2 7.9 40 196-235 89-128 (267)
107 3dzd_A Transcriptional regulat 96.6 0.024 8.1E-07 55.2 13.3 49 188-236 129-177 (368)
108 3tlx_A Adenylate kinase 2; str 96.6 0.0028 9.7E-08 57.9 6.4 42 194-235 12-53 (243)
109 3io5_A Recombination and repai 96.6 0.0058 2E-07 57.4 8.3 34 213-246 30-65 (333)
110 1rz3_A Hypothetical protein rb 96.5 0.0031 1.1E-07 55.7 5.8 44 193-236 3-47 (201)
111 1qhx_A CPT, protein (chloramph 96.5 0.0014 4.7E-08 56.7 3.3 25 212-236 4-28 (178)
112 3c8u_A Fructokinase; YP_612366 96.5 0.0024 8.1E-08 56.9 4.8 40 197-236 8-47 (208)
113 3hws_A ATP-dependent CLP prote 96.4 0.0024 8.2E-08 62.2 4.8 47 190-236 17-76 (363)
114 1ex7_A Guanylate kinase; subst 96.3 0.0015 5.2E-08 56.8 2.5 28 212-239 2-29 (186)
115 1g5t_A COB(I)alamin adenosyltr 96.3 0.0053 1.8E-07 53.4 5.7 118 212-330 29-163 (196)
116 3kb2_A SPBC2 prophage-derived 96.2 0.0024 8.3E-08 54.6 3.4 25 212-236 2-26 (173)
117 1v5w_A DMC1, meiotic recombina 96.2 0.014 4.8E-07 56.2 8.9 36 200-235 111-146 (343)
118 1odf_A YGR205W, hypothetical 3 96.2 0.0052 1.8E-07 57.7 5.4 30 208-237 28-57 (290)
119 1xp8_A RECA protein, recombina 96.1 0.0065 2.2E-07 58.9 6.2 50 197-246 59-109 (366)
120 3jvv_A Twitching mobility prot 96.1 0.011 3.7E-07 57.1 7.7 108 211-331 123-232 (356)
121 1tue_A Replication protein E1; 96.1 0.0055 1.9E-07 53.7 4.7 41 196-237 44-84 (212)
122 3upu_A ATP-dependent DNA helic 96.1 0.013 4.3E-07 59.1 8.1 52 185-239 18-73 (459)
123 3trf_A Shikimate kinase, SK; a 96.1 0.0033 1.1E-07 54.6 3.4 26 211-236 5-30 (185)
124 1g8p_A Magnesium-chelatase 38 96.1 0.0036 1.2E-07 60.5 3.9 50 185-236 21-70 (350)
125 1zu4_A FTSY; GTPase, signal re 96.0 0.017 5.7E-07 55.0 8.4 29 210-238 104-132 (320)
126 3vaa_A Shikimate kinase, SK; s 96.0 0.0035 1.2E-07 55.3 3.5 25 211-235 25-49 (199)
127 1kgd_A CASK, peripheral plasma 96.0 0.0038 1.3E-07 54.0 3.4 26 211-236 5-30 (180)
128 1ly1_A Polynucleotide kinase; 96.0 0.0038 1.3E-07 53.8 3.3 22 212-233 3-24 (181)
129 1nks_A Adenylate kinase; therm 95.9 0.0053 1.8E-07 53.5 4.1 26 212-237 2-27 (194)
130 1ny5_A Transcriptional regulat 95.9 0.062 2.1E-06 52.6 12.2 47 189-235 138-184 (387)
131 3tau_A Guanylate kinase, GMP k 95.9 0.004 1.4E-07 55.3 3.2 28 210-237 7-34 (208)
132 3a00_A Guanylate kinase, GMP k 95.9 0.0044 1.5E-07 54.0 3.3 28 212-239 2-29 (186)
133 1zp6_A Hypothetical protein AT 95.9 0.0044 1.5E-07 54.1 3.3 25 210-234 8-32 (191)
134 2rhm_A Putative kinase; P-loop 95.9 0.0052 1.8E-07 53.6 3.7 25 211-235 5-29 (193)
135 3uie_A Adenylyl-sulfate kinase 95.9 0.0051 1.8E-07 54.2 3.7 27 210-236 24-50 (200)
136 3lw7_A Adenylate kinase relate 95.8 0.0045 1.5E-07 53.0 3.2 22 212-234 2-23 (179)
137 1kag_A SKI, shikimate kinase I 95.8 0.004 1.4E-07 53.4 2.8 25 212-236 5-29 (173)
138 3dm5_A SRP54, signal recogniti 95.8 0.034 1.2E-06 55.0 9.5 29 210-238 99-127 (443)
139 3iij_A Coilin-interacting nucl 95.8 0.0045 1.6E-07 53.5 2.9 25 211-235 11-35 (180)
140 3kl4_A SRP54, signal recogniti 95.8 0.042 1.4E-06 54.3 10.1 29 210-238 96-124 (433)
141 2r2a_A Uncharacterized protein 95.7 0.011 3.9E-07 51.9 5.4 22 213-234 7-28 (199)
142 1kht_A Adenylate kinase; phosp 95.7 0.0051 1.8E-07 53.6 3.2 26 212-237 4-29 (192)
143 2dr3_A UPF0273 protein PH0284; 95.7 0.0051 1.7E-07 56.0 3.3 37 210-246 22-58 (247)
144 3ney_A 55 kDa erythrocyte memb 95.7 0.0057 1.9E-07 53.6 3.3 27 210-236 18-44 (197)
145 1vma_A Cell division protein F 95.7 0.024 8.1E-07 53.5 7.8 29 210-238 103-131 (306)
146 3t61_A Gluconokinase; PSI-biol 95.7 0.0043 1.5E-07 54.8 2.5 25 211-235 18-42 (202)
147 2ze6_A Isopentenyl transferase 95.7 0.0063 2.1E-07 55.9 3.6 25 212-236 2-26 (253)
148 2yvu_A Probable adenylyl-sulfa 95.7 0.0091 3.1E-07 51.8 4.5 28 210-237 12-39 (186)
149 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.0077 2.6E-07 54.2 4.2 35 211-245 23-57 (235)
150 4eun_A Thermoresistant glucoki 95.7 0.0059 2E-07 53.8 3.3 26 210-235 28-53 (200)
151 1zuh_A Shikimate kinase; alpha 95.6 0.0064 2.2E-07 51.8 3.3 26 211-236 7-32 (168)
152 2qor_A Guanylate kinase; phosp 95.6 0.005 1.7E-07 54.5 2.6 27 210-236 11-37 (204)
153 1knq_A Gluconate kinase; ALFA/ 95.6 0.0082 2.8E-07 51.5 3.9 25 211-235 8-32 (175)
154 3umf_A Adenylate kinase; rossm 95.6 0.0079 2.7E-07 53.7 3.7 27 209-235 27-53 (217)
155 1gvn_B Zeta; postsegregational 95.6 0.011 3.7E-07 55.4 4.8 26 210-235 32-57 (287)
156 1tev_A UMP-CMP kinase; ploop, 95.5 0.0073 2.5E-07 52.7 3.5 25 211-235 3-27 (196)
157 2c95_A Adenylate kinase 1; tra 95.5 0.0072 2.5E-07 52.9 3.4 25 211-235 9-33 (196)
158 2px0_A Flagellar biosynthesis 95.5 0.018 6.3E-07 54.1 6.3 28 210-237 104-131 (296)
159 3p32_A Probable GTPase RV1496/ 95.5 0.019 6.6E-07 55.5 6.6 41 197-237 65-105 (355)
160 2vli_A Antibiotic resistance p 95.5 0.0058 2E-07 52.8 2.7 26 211-236 5-30 (183)
161 3bh0_A DNAB-like replicative h 95.5 0.028 9.7E-07 53.4 7.7 38 209-246 66-103 (315)
162 1via_A Shikimate kinase; struc 95.5 0.0069 2.4E-07 52.0 3.1 24 213-236 6-29 (175)
163 1ukz_A Uridylate kinase; trans 95.5 0.0087 3E-07 52.8 3.8 26 210-235 14-39 (203)
164 3cm0_A Adenylate kinase; ATP-b 95.5 0.0081 2.8E-07 52.1 3.5 25 211-235 4-28 (186)
165 1n0w_A DNA repair protein RAD5 95.5 0.016 5.6E-07 52.5 5.7 37 199-235 12-48 (243)
166 1xjc_A MOBB protein homolog; s 95.5 0.01 3.5E-07 50.5 4.0 28 211-238 4-31 (169)
167 1y63_A LMAJ004144AAA protein; 95.5 0.0081 2.8E-07 52.1 3.5 24 211-234 10-33 (184)
168 3tr0_A Guanylate kinase, GMP k 95.5 0.0075 2.6E-07 53.2 3.3 25 211-235 7-31 (205)
169 2jaq_A Deoxyguanosine kinase; 95.5 0.0078 2.7E-07 53.0 3.3 25 213-237 2-26 (205)
170 2plr_A DTMP kinase, probable t 95.5 0.0085 2.9E-07 53.1 3.6 28 211-238 4-31 (213)
171 2iyv_A Shikimate kinase, SK; t 95.5 0.0061 2.1E-07 52.8 2.6 24 213-236 4-27 (184)
172 3tqc_A Pantothenate kinase; bi 95.4 0.012 4.1E-07 55.8 4.7 47 190-236 69-117 (321)
173 2bwj_A Adenylate kinase 5; pho 95.4 0.0073 2.5E-07 53.0 3.0 26 211-236 12-37 (199)
174 2j9r_A Thymidine kinase; TK1, 95.4 0.047 1.6E-06 48.2 8.1 112 210-331 27-139 (214)
175 1uj2_A Uridine-cytidine kinase 95.4 0.0088 3E-07 54.9 3.6 28 209-236 20-47 (252)
176 1e6c_A Shikimate kinase; phosp 95.4 0.0071 2.4E-07 51.7 2.7 25 212-236 3-27 (173)
177 4a74_A DNA repair and recombin 95.4 0.014 4.9E-07 52.3 4.9 26 210-235 24-49 (231)
178 2z0h_A DTMP kinase, thymidylat 95.4 0.02 6.9E-07 50.0 5.7 25 213-237 2-26 (197)
179 1nn5_A Similar to deoxythymidy 95.4 0.011 3.6E-07 52.6 3.9 27 211-237 9-35 (215)
180 1u94_A RECA protein, recombina 95.4 0.012 4.1E-07 56.9 4.4 49 198-246 49-98 (356)
181 3ice_A Transcription terminati 95.3 0.041 1.4E-06 53.0 8.0 30 210-239 173-202 (422)
182 2zts_A Putative uncharacterize 95.3 0.0089 3E-07 54.5 3.4 26 210-235 29-54 (251)
183 1sky_E F1-ATPase, F1-ATP synth 95.3 0.017 5.7E-07 57.5 5.5 30 212-241 152-181 (473)
184 2cdn_A Adenylate kinase; phosp 95.3 0.011 3.6E-07 52.2 3.7 25 211-235 20-44 (201)
185 2zr9_A Protein RECA, recombina 95.3 0.012 4E-07 56.8 4.3 49 198-246 47-96 (349)
186 3fwy_A Light-independent proto 95.3 0.013 4.3E-07 55.7 4.4 35 209-243 46-80 (314)
187 1aky_A Adenylate kinase; ATP:A 95.3 0.0098 3.4E-07 53.2 3.5 26 211-236 4-29 (220)
188 2j41_A Guanylate kinase; GMP, 95.3 0.0093 3.2E-07 52.6 3.3 25 211-235 6-30 (207)
189 2bdt_A BH3686; alpha-beta prot 95.3 0.0096 3.3E-07 51.8 3.3 23 212-234 3-25 (189)
190 1qf9_A UMP/CMP kinase, protein 95.3 0.0098 3.4E-07 51.8 3.3 26 211-236 6-31 (194)
191 2p5t_B PEZT; postsegregational 95.2 0.019 6.4E-07 52.7 5.3 27 210-236 31-57 (253)
192 3e70_C DPA, signal recognition 95.2 0.021 7.2E-07 54.4 5.7 29 209-237 127-155 (328)
193 3a4m_A L-seryl-tRNA(SEC) kinas 95.2 0.011 3.7E-07 54.6 3.6 26 211-236 4-29 (260)
194 3asz_A Uridine kinase; cytidin 95.2 0.011 3.8E-07 52.5 3.5 27 210-236 5-31 (211)
195 1puj_A YLQF, conserved hypothe 95.2 0.16 5.5E-06 47.2 11.6 48 58-111 12-59 (282)
196 4gp7_A Metallophosphoesterase; 95.2 0.0091 3.1E-07 51.1 2.8 23 210-232 8-30 (171)
197 2wwf_A Thymidilate kinase, put 95.2 0.0099 3.4E-07 52.7 3.1 27 211-237 10-36 (212)
198 2pt5_A Shikimate kinase, SK; a 95.2 0.011 3.9E-07 50.2 3.4 24 213-236 2-25 (168)
199 1ye8_A Protein THEP1, hypothet 95.1 0.011 3.8E-07 51.0 3.2 24 213-236 2-25 (178)
200 1cke_A CK, MSSA, protein (cyti 95.1 0.011 3.6E-07 53.2 3.2 24 212-235 6-29 (227)
201 2ga8_A Hypothetical 39.9 kDa p 95.1 0.012 4.1E-07 56.3 3.6 31 209-239 22-52 (359)
202 3zvl_A Bifunctional polynucleo 95.1 0.026 8.9E-07 55.9 6.2 27 209-235 256-282 (416)
203 1lvg_A Guanylate kinase, GMP k 95.1 0.0084 2.9E-07 52.8 2.4 26 211-236 4-29 (198)
204 1s96_A Guanylate kinase, GMP k 95.1 0.012 4.2E-07 52.6 3.4 27 210-236 15-41 (219)
205 3fb4_A Adenylate kinase; psych 95.1 0.011 3.9E-07 52.6 3.2 23 213-235 2-24 (216)
206 2pbr_A DTMP kinase, thymidylat 95.1 0.011 3.9E-07 51.4 3.2 24 213-236 2-25 (195)
207 1rj9_A FTSY, signal recognitio 95.1 0.017 5.8E-07 54.5 4.5 29 210-238 101-129 (304)
208 1uf9_A TT1252 protein; P-loop, 95.1 0.012 4.2E-07 51.7 3.3 26 209-234 6-31 (203)
209 2bbw_A Adenylate kinase 4, AK4 95.0 0.012 4E-07 53.8 3.2 25 211-235 27-51 (246)
210 2qt1_A Nicotinamide riboside k 95.0 0.013 4.4E-07 51.9 3.4 26 210-235 20-45 (207)
211 1zak_A Adenylate kinase; ATP:A 95.0 0.011 3.7E-07 53.0 2.9 26 211-236 5-30 (222)
212 2pez_A Bifunctional 3'-phospho 95.0 0.015 5E-07 50.1 3.6 26 211-236 5-30 (179)
213 3dl0_A Adenylate kinase; phosp 95.0 0.012 4.2E-07 52.4 3.2 23 213-235 2-24 (216)
214 1gtv_A TMK, thymidylate kinase 95.0 0.0088 3E-07 53.1 2.2 25 213-237 2-26 (214)
215 1zd8_A GTP:AMP phosphotransfer 95.0 0.012 4.2E-07 52.9 3.1 25 211-235 7-31 (227)
216 2v54_A DTMP kinase, thymidylat 95.0 0.013 4.5E-07 51.6 3.2 25 211-235 4-28 (204)
217 2qmh_A HPR kinase/phosphorylas 94.9 0.014 4.8E-07 50.8 3.2 25 211-235 34-58 (205)
218 1g41_A Heat shock protein HSLU 94.9 0.019 6.6E-07 56.8 4.6 49 190-238 17-77 (444)
219 2hf9_A Probable hydrogenase ni 94.9 0.023 7.8E-07 50.9 4.7 40 196-237 25-64 (226)
220 2q6t_A DNAB replication FORK h 94.9 0.052 1.8E-06 54.2 7.8 47 199-246 189-236 (444)
221 2if2_A Dephospho-COA kinase; a 94.9 0.012 4.2E-07 51.8 2.9 21 213-233 3-23 (204)
222 2r8r_A Sensor protein; KDPD, P 94.9 0.024 8.2E-07 50.5 4.7 34 212-245 7-40 (228)
223 1znw_A Guanylate kinase, GMP k 94.9 0.014 4.6E-07 51.8 3.0 27 210-236 19-45 (207)
224 3k1j_A LON protease, ATP-depen 94.9 0.023 7.9E-07 59.3 5.2 49 186-238 39-87 (604)
225 2z43_A DNA repair and recombin 94.8 0.023 8E-07 54.2 4.8 38 199-236 95-132 (324)
226 3a8t_A Adenylate isopentenyltr 94.8 0.015 5.2E-07 55.2 3.4 26 211-236 40-65 (339)
227 1jjv_A Dephospho-COA kinase; P 94.8 0.015 5E-07 51.5 3.1 22 212-233 3-24 (206)
228 2wsm_A Hydrogenase expression/ 94.8 0.03 1E-06 49.9 5.3 42 195-238 16-57 (221)
229 1m7g_A Adenylylsulfate kinase; 94.8 0.018 6.2E-07 51.1 3.7 27 210-236 24-50 (211)
230 2r6a_A DNAB helicase, replicat 94.8 0.17 5.8E-06 50.6 11.2 38 209-246 201-239 (454)
231 4e22_A Cytidylate kinase; P-lo 94.8 0.017 5.9E-07 52.9 3.6 26 211-236 27-52 (252)
232 1z6g_A Guanylate kinase; struc 94.8 0.012 4.1E-07 52.7 2.5 25 211-235 23-47 (218)
233 2jeo_A Uridine-cytidine kinase 94.8 0.018 6.3E-07 52.5 3.7 26 210-235 24-49 (245)
234 1htw_A HI0065; nucleotide-bind 94.8 0.018 6.3E-07 48.5 3.5 27 209-235 31-57 (158)
235 2ehv_A Hypothetical protein PH 94.8 0.02 6.7E-07 52.2 3.9 25 210-234 29-53 (251)
236 3e1s_A Exodeoxyribonuclease V, 94.7 0.077 2.6E-06 54.8 8.8 28 211-238 204-231 (574)
237 4eaq_A DTMP kinase, thymidylat 94.7 0.04 1.4E-06 49.6 5.8 28 210-237 25-52 (229)
238 4a1f_A DNAB helicase, replicat 94.7 0.082 2.8E-06 50.4 8.2 38 209-246 44-81 (338)
239 2eyu_A Twitching motility prot 94.7 0.024 8.4E-07 52.1 4.4 110 209-331 23-134 (261)
240 2grj_A Dephospho-COA kinase; T 94.7 0.017 5.8E-07 50.5 3.2 26 210-235 11-36 (192)
241 1j8m_F SRP54, signal recogniti 94.7 0.035 1.2E-06 52.1 5.6 28 211-238 98-125 (297)
242 3be4_A Adenylate kinase; malar 94.7 0.015 5.1E-07 51.9 2.8 24 212-235 6-29 (217)
243 3exa_A TRNA delta(2)-isopenten 94.7 0.018 6E-07 54.1 3.3 25 211-235 3-27 (322)
244 4edh_A DTMP kinase, thymidylat 94.6 0.055 1.9E-06 48.0 6.5 28 211-238 6-33 (213)
245 3aez_A Pantothenate kinase; tr 94.6 0.018 6.2E-07 54.5 3.4 28 209-236 88-115 (312)
246 2pt7_A CAG-ALFA; ATPase, prote 94.6 0.054 1.9E-06 51.7 6.8 85 211-310 171-258 (330)
247 3d3q_A TRNA delta(2)-isopenten 94.6 0.019 6.4E-07 54.8 3.4 25 212-236 8-32 (340)
248 3foz_A TRNA delta(2)-isopenten 94.6 0.021 7.3E-07 53.4 3.8 26 210-235 9-34 (316)
249 3nwj_A ATSK2; P loop, shikimat 94.6 0.016 5.4E-07 53.0 2.9 26 211-236 48-73 (250)
250 2ck3_D ATP synthase subunit be 94.6 0.13 4.3E-06 51.1 9.4 55 211-267 153-207 (482)
251 3b9q_A Chloroplast SRP recepto 94.6 0.026 8.9E-07 53.2 4.3 28 210-237 99-126 (302)
252 3crm_A TRNA delta(2)-isopenten 94.5 0.019 6.6E-07 54.3 3.3 26 211-236 5-30 (323)
253 3r20_A Cytidylate kinase; stru 94.5 0.021 7.1E-07 51.5 3.4 26 211-236 9-34 (233)
254 1pzn_A RAD51, DNA repair and r 94.5 0.039 1.3E-06 53.2 5.4 35 201-235 121-155 (349)
255 1a7j_A Phosphoribulokinase; tr 94.4 0.014 4.8E-07 54.7 2.1 27 210-236 4-30 (290)
256 3cmu_A Protein RECA, recombina 94.4 0.044 1.5E-06 63.9 6.5 47 200-246 1415-1462(2050)
257 2f1r_A Molybdopterin-guanine d 94.4 0.02 6.8E-07 49.0 2.8 26 212-237 3-28 (171)
258 2xb4_A Adenylate kinase; ATP-b 94.4 0.021 7.2E-07 51.2 3.2 23 213-235 2-24 (223)
259 3ake_A Cytidylate kinase; CMP 94.4 0.022 7.5E-07 50.2 3.2 24 213-236 4-27 (208)
260 1np6_A Molybdopterin-guanine d 94.4 0.03 1E-06 48.0 3.9 27 211-237 6-32 (174)
261 1e4v_A Adenylate kinase; trans 94.4 0.021 7.2E-07 50.8 3.0 23 213-235 2-24 (214)
262 3lnc_A Guanylate kinase, GMP k 94.3 0.015 5.2E-07 52.4 2.1 25 211-235 27-52 (231)
263 1cr0_A DNA primase/helicase; R 94.3 0.029 9.9E-07 52.7 4.1 29 210-238 34-62 (296)
264 1ak2_A Adenylate kinase isoenz 94.3 0.026 9E-07 50.9 3.6 26 211-236 16-41 (233)
265 1vht_A Dephospho-COA kinase; s 94.2 0.028 9.5E-07 50.1 3.6 23 211-233 4-26 (218)
266 1yrb_A ATP(GTP)binding protein 94.2 0.041 1.4E-06 50.5 4.8 27 210-236 13-39 (262)
267 2f6r_A COA synthase, bifunctio 94.2 0.025 8.6E-07 52.7 3.4 24 210-233 74-97 (281)
268 3gmt_A Adenylate kinase; ssgci 94.2 0.026 8.9E-07 50.6 3.3 24 212-235 9-32 (230)
269 1g8f_A Sulfate adenylyltransfe 94.2 0.037 1.3E-06 55.9 4.8 48 190-237 374-421 (511)
270 2v3c_C SRP54, signal recogniti 94.2 0.025 8.4E-07 56.2 3.3 28 211-238 99-126 (432)
271 3v9p_A DTMP kinase, thymidylat 94.1 0.06 2.1E-06 48.3 5.5 28 211-238 25-52 (227)
272 2og2_A Putative signal recogni 94.1 0.036 1.2E-06 53.4 4.3 28 210-237 156-183 (359)
273 3ld9_A DTMP kinase, thymidylat 94.1 0.073 2.5E-06 47.5 6.0 28 210-237 20-47 (223)
274 2i1q_A DNA repair and recombin 94.1 0.087 3E-06 50.1 7.0 37 199-235 86-122 (322)
275 1svm_A Large T antigen; AAA+ f 94.0 0.05 1.7E-06 52.8 5.2 28 208-235 166-193 (377)
276 2i3b_A HCR-ntpase, human cance 94.0 0.022 7.6E-07 49.6 2.4 24 213-236 3-26 (189)
277 3end_A Light-independent proto 94.0 0.041 1.4E-06 52.0 4.4 37 209-245 39-75 (307)
278 1sq5_A Pantothenate kinase; P- 94.0 0.032 1.1E-06 52.8 3.6 28 209-236 78-105 (308)
279 3l0o_A Transcription terminati 94.0 0.14 4.7E-06 49.4 7.9 29 210-238 174-202 (427)
280 3lv8_A DTMP kinase, thymidylat 94.0 0.066 2.3E-06 48.3 5.5 28 211-238 27-54 (236)
281 1ltq_A Polynucleotide kinase; 93.9 0.031 1.1E-06 52.6 3.4 23 212-234 3-25 (301)
282 3cr8_A Sulfate adenylyltranfer 93.9 0.049 1.7E-06 55.7 5.1 28 210-237 368-395 (552)
283 3cmw_A Protein RECA, recombina 93.9 0.053 1.8E-06 62.3 5.8 50 197-246 717-767 (1706)
284 4tmk_A Protein (thymidylate ki 93.9 0.075 2.5E-06 47.2 5.7 28 211-238 3-30 (213)
285 2yhs_A FTSY, cell division pro 93.9 0.042 1.4E-06 55.0 4.3 36 210-246 292-327 (503)
286 1nlf_A Regulatory protein REPA 93.9 0.041 1.4E-06 51.2 4.1 26 211-236 30-55 (279)
287 2xxa_A Signal recognition part 93.9 0.046 1.6E-06 54.2 4.6 29 210-238 99-127 (433)
288 3tif_A Uncharacterized ABC tra 93.9 0.026 9E-07 51.0 2.7 26 210-235 30-55 (235)
289 1fx0_B ATP synthase beta chain 93.8 0.14 4.9E-06 50.9 8.0 54 210-266 164-218 (498)
290 3ug7_A Arsenical pump-driving 93.8 0.094 3.2E-06 50.5 6.6 31 208-238 23-53 (349)
291 1cp2_A CP2, nitrogenase iron p 93.8 0.048 1.6E-06 50.3 4.4 34 212-245 2-35 (269)
292 3bgw_A DNAB-like replicative h 93.7 0.046 1.6E-06 54.5 4.4 37 209-245 195-231 (444)
293 1ls1_A Signal recognition part 93.7 0.052 1.8E-06 50.9 4.6 29 210-238 97-125 (295)
294 3tqf_A HPR(Ser) kinase; transf 93.7 0.039 1.3E-06 46.7 3.2 24 211-234 16-39 (181)
295 3lda_A DNA repair protein RAD5 93.7 0.031 1E-06 54.8 2.9 36 199-234 166-201 (400)
296 2j37_W Signal recognition part 93.7 0.07 2.4E-06 53.9 5.6 29 210-238 100-128 (504)
297 2rcn_A Probable GTPase ENGC; Y 93.6 0.29 9.8E-06 47.0 9.5 24 212-235 216-239 (358)
298 1q57_A DNA primase/helicase; d 93.6 0.14 4.9E-06 51.9 7.9 38 209-246 240-278 (503)
299 2cbz_A Multidrug resistance-as 93.6 0.032 1.1E-06 50.6 2.7 26 210-235 30-55 (237)
300 2onk_A Molybdate/tungstate ABC 93.6 0.036 1.2E-06 50.3 3.0 24 212-235 25-48 (240)
301 3eph_A TRNA isopentenyltransfe 93.6 0.038 1.3E-06 53.8 3.3 25 212-236 3-27 (409)
302 2pcj_A ABC transporter, lipopr 93.5 0.029 1E-06 50.3 2.3 24 211-234 30-53 (224)
303 3b85_A Phosphate starvation-in 93.5 0.031 1.1E-06 49.5 2.4 24 211-234 22-45 (208)
304 2p67_A LAO/AO transport system 93.5 0.086 2.9E-06 50.6 5.7 28 209-236 54-81 (341)
305 1b0u_A Histidine permease; ABC 93.5 0.034 1.2E-06 51.2 2.7 26 210-235 31-56 (262)
306 2v9p_A Replication protein E1; 93.4 0.04 1.4E-06 51.8 3.1 27 209-235 124-150 (305)
307 1mv5_A LMRA, multidrug resista 93.4 0.039 1.3E-06 50.2 3.0 25 210-234 27-51 (243)
308 3iqw_A Tail-anchored protein t 93.4 0.086 2.9E-06 50.3 5.5 38 209-246 14-51 (334)
309 2qi9_C Vitamin B12 import ATP- 93.4 0.044 1.5E-06 50.0 3.3 27 211-237 26-52 (249)
310 1oix_A RAS-related protein RAB 93.4 0.04 1.4E-06 47.9 2.9 25 211-235 29-53 (191)
311 1q3t_A Cytidylate kinase; nucl 93.4 0.048 1.6E-06 49.3 3.5 26 210-235 15-40 (236)
312 2ocp_A DGK, deoxyguanosine kin 93.3 0.045 1.5E-06 49.6 3.3 26 211-236 2-27 (241)
313 2zu0_C Probable ATP-dependent 93.3 0.043 1.5E-06 50.7 3.2 25 210-234 45-69 (267)
314 2dyk_A GTP-binding protein; GT 93.3 0.048 1.6E-06 45.5 3.3 23 212-234 2-24 (161)
315 2afh_E Nitrogenase iron protei 93.3 0.06 2E-06 50.3 4.2 27 212-238 3-29 (289)
316 3io3_A DEHA2D07832P; chaperone 93.3 0.092 3.1E-06 50.4 5.6 37 209-245 16-54 (348)
317 2wji_A Ferrous iron transport 93.3 0.047 1.6E-06 46.1 3.2 23 212-234 4-26 (165)
318 3cnl_A YLQF, putative uncharac 93.3 0.1 3.4E-06 48.0 5.6 23 212-234 100-122 (262)
319 2olj_A Amino acid ABC transpor 93.3 0.037 1.3E-06 50.9 2.7 26 210-235 49-74 (263)
320 3zq6_A Putative arsenical pump 93.3 0.081 2.8E-06 50.4 5.2 35 211-245 14-48 (324)
321 2qm8_A GTPase/ATPase; G protei 93.3 0.1 3.6E-06 49.9 5.9 28 209-236 53-80 (337)
322 1w36_D RECD, exodeoxyribonucle 93.3 0.22 7.6E-06 51.8 8.8 26 211-236 164-189 (608)
323 2zej_A Dardarin, leucine-rich 93.2 0.034 1.2E-06 48.0 2.2 21 213-233 4-24 (184)
324 3cmw_A Protein RECA, recombina 93.2 0.09 3.1E-06 60.5 6.1 50 197-246 368-418 (1706)
325 3hjn_A DTMP kinase, thymidylat 93.2 0.13 4.4E-06 45.0 5.9 33 213-245 2-34 (197)
326 4hlc_A DTMP kinase, thymidylat 93.2 0.13 4.3E-06 45.4 5.9 29 212-240 3-31 (205)
327 2f9l_A RAB11B, member RAS onco 93.2 0.042 1.4E-06 48.0 2.8 23 212-234 6-28 (199)
328 3cmu_A Protein RECA, recombina 93.2 0.1 3.4E-06 61.0 6.5 54 193-246 364-418 (2050)
329 2d2e_A SUFC protein; ABC-ATPas 93.2 0.045 1.5E-06 50.0 3.0 24 211-234 29-52 (250)
330 1vpl_A ABC transporter, ATP-bi 93.2 0.04 1.4E-06 50.5 2.7 26 210-235 40-65 (256)
331 2ghi_A Transport protein; mult 93.1 0.041 1.4E-06 50.6 2.7 26 210-235 45-70 (260)
332 2fz4_A DNA repair protein RAD2 93.1 0.2 6.9E-06 45.2 7.3 40 191-235 93-132 (237)
333 2hjg_A GTP-binding protein ENG 93.1 0.92 3.1E-05 45.0 12.8 25 210-234 174-198 (436)
334 3kjh_A CO dehydrogenase/acetyl 93.1 0.079 2.7E-06 48.1 4.6 32 214-245 3-34 (254)
335 2gks_A Bifunctional SAT/APS ki 93.1 0.095 3.3E-06 53.7 5.7 48 190-237 351-398 (546)
336 1ji0_A ABC transporter; ATP bi 93.1 0.04 1.4E-06 50.0 2.5 24 211-234 32-55 (240)
337 3gfo_A Cobalt import ATP-bindi 93.1 0.038 1.3E-06 51.2 2.4 24 211-234 34-57 (275)
338 4g1u_C Hemin import ATP-bindin 93.1 0.04 1.4E-06 50.9 2.5 25 210-234 36-60 (266)
339 2pze_A Cystic fibrosis transme 93.1 0.041 1.4E-06 49.5 2.5 26 211-236 34-59 (229)
340 1g6h_A High-affinity branched- 93.0 0.041 1.4E-06 50.5 2.5 25 211-235 33-57 (257)
341 2ixe_A Antigen peptide transpo 93.0 0.043 1.5E-06 50.8 2.7 26 210-235 44-69 (271)
342 1sgw_A Putative ABC transporte 93.0 0.035 1.2E-06 49.4 1.9 25 211-235 35-59 (214)
343 1m8p_A Sulfate adenylyltransfe 93.0 0.091 3.1E-06 54.1 5.3 27 210-236 395-421 (573)
344 2ff7_A Alpha-hemolysin translo 93.0 0.043 1.5E-06 50.1 2.5 25 211-235 35-59 (247)
345 1tq4_A IIGP1, interferon-induc 92.9 0.052 1.8E-06 53.4 3.2 36 199-234 57-92 (413)
346 2yz2_A Putative ABC transporte 92.9 0.047 1.6E-06 50.4 2.7 25 210-234 32-56 (266)
347 2ged_A SR-beta, signal recogni 92.8 0.062 2.1E-06 46.5 3.3 24 211-234 48-71 (193)
348 1z2a_A RAS-related protein RAB 92.7 0.056 1.9E-06 45.4 2.8 23 212-234 6-28 (168)
349 2ewv_A Twitching motility prot 92.7 0.085 2.9E-06 51.3 4.4 108 210-329 135-243 (372)
350 2axn_A 6-phosphofructo-2-kinas 92.7 0.085 2.9E-06 53.7 4.5 28 210-237 34-61 (520)
351 2ce2_X GTPase HRAS; signaling 92.7 0.054 1.9E-06 45.2 2.6 22 213-234 5-26 (166)
352 2nq2_C Hypothetical ABC transp 92.6 0.051 1.7E-06 49.7 2.5 25 211-235 31-55 (253)
353 3nh6_A ATP-binding cassette SU 92.6 0.054 1.9E-06 51.0 2.8 26 210-235 79-104 (306)
354 2wjg_A FEOB, ferrous iron tran 92.6 0.068 2.3E-06 46.0 3.3 24 211-234 7-30 (188)
355 2ffh_A Protein (FFH); SRP54, s 92.6 0.099 3.4E-06 51.5 4.7 29 210-238 97-125 (425)
356 1p9r_A General secretion pathw 92.6 0.16 5.4E-06 50.1 6.2 38 198-238 157-194 (418)
357 1fzq_A ADP-ribosylation factor 92.6 0.086 2.9E-06 45.2 3.8 25 210-234 15-39 (181)
358 2nzj_A GTP-binding protein REM 92.6 0.058 2E-06 45.7 2.7 23 212-234 5-27 (175)
359 2ihy_A ABC transporter, ATP-bi 92.5 0.052 1.8E-06 50.4 2.5 26 210-235 46-71 (279)
360 2lkc_A Translation initiation 92.5 0.075 2.6E-06 45.1 3.3 25 210-234 7-31 (178)
361 4dzz_A Plasmid partitioning pr 92.4 0.13 4.4E-06 45.0 4.9 34 212-245 2-36 (206)
362 3fdi_A Uncharacterized protein 92.4 0.073 2.5E-06 46.8 3.2 25 212-236 7-31 (201)
363 3fvq_A Fe(3+) IONS import ATP- 92.4 0.064 2.2E-06 51.6 3.0 25 210-234 29-53 (359)
364 2www_A Methylmalonic aciduria 92.4 0.11 3.6E-06 50.1 4.6 27 210-236 73-99 (349)
365 1kao_A RAP2A; GTP-binding prot 92.3 0.067 2.3E-06 44.7 2.8 22 213-234 5-26 (167)
366 1ypw_A Transitional endoplasmi 92.3 0.054 1.8E-06 58.4 2.6 52 186-237 475-537 (806)
367 2vp4_A Deoxynucleoside kinase; 92.3 0.055 1.9E-06 48.7 2.3 25 210-234 19-43 (230)
368 3d31_A Sulfate/molybdate ABC t 92.3 0.073 2.5E-06 51.0 3.3 26 210-235 25-50 (348)
369 1r8s_A ADP-ribosylation factor 92.3 0.072 2.5E-06 44.6 2.9 21 214-234 3-23 (164)
370 2iwr_A Centaurin gamma 1; ANK 92.3 0.066 2.2E-06 45.6 2.7 23 212-234 8-30 (178)
371 3sop_A Neuronal-specific septi 92.3 0.065 2.2E-06 49.6 2.8 23 213-235 4-26 (270)
372 1u8z_A RAS-related protein RAL 92.3 0.069 2.4E-06 44.7 2.8 23 212-234 5-27 (168)
373 3con_A GTPase NRAS; structural 92.3 0.068 2.3E-06 46.1 2.8 23 212-234 22-44 (190)
374 3q85_A GTP-binding protein REM 92.3 0.067 2.3E-06 45.0 2.7 21 213-233 4-24 (169)
375 1p5z_B DCK, deoxycytidine kina 92.2 0.043 1.5E-06 50.5 1.5 27 210-236 23-49 (263)
376 1oxx_K GLCV, glucose, ABC tran 92.2 0.071 2.4E-06 51.3 3.1 25 210-234 30-54 (353)
377 3ihw_A Centg3; RAS, centaurin, 92.2 0.069 2.4E-06 46.0 2.8 24 211-234 20-43 (184)
378 1z08_A RAS-related protein RAB 92.2 0.07 2.4E-06 44.9 2.8 24 211-234 6-29 (170)
379 2erx_A GTP-binding protein DI- 92.2 0.069 2.4E-06 44.9 2.7 23 212-234 4-26 (172)
380 1h65_A Chloroplast outer envel 92.2 0.13 4.5E-06 47.4 4.8 35 200-234 28-62 (270)
381 1ek0_A Protein (GTP-binding pr 92.1 0.074 2.5E-06 44.7 2.8 22 213-234 5-26 (170)
382 1c1y_A RAS-related protein RAP 92.1 0.074 2.5E-06 44.5 2.8 22 213-234 5-26 (167)
383 3f9v_A Minichromosome maintena 92.1 0.045 1.5E-06 56.8 1.6 49 188-236 295-352 (595)
384 2gj8_A MNME, tRNA modification 92.1 0.068 2.3E-06 45.5 2.5 23 212-234 5-27 (172)
385 1m7b_A RND3/RHOE small GTP-bin 92.1 0.07 2.4E-06 45.8 2.6 24 211-234 7-30 (184)
386 2h92_A Cytidylate kinase; ross 92.1 0.072 2.5E-06 47.3 2.8 24 212-235 4-27 (219)
387 1nrj_B SR-beta, signal recogni 92.1 0.086 3E-06 46.7 3.3 26 210-235 11-36 (218)
388 2hxs_A RAB-26, RAS-related pro 92.1 0.079 2.7E-06 45.0 2.9 24 211-234 6-29 (178)
389 2yyz_A Sugar ABC transporter, 92.1 0.079 2.7E-06 51.0 3.2 25 210-234 28-52 (359)
390 1z0j_A RAB-22, RAS-related pro 92.1 0.076 2.6E-06 44.6 2.8 23 212-234 7-29 (170)
391 3def_A T7I23.11 protein; chlor 92.0 0.14 4.8E-06 47.0 4.8 36 199-234 24-59 (262)
392 2yv5_A YJEQ protein; hydrolase 92.0 0.11 3.7E-06 48.9 4.1 33 197-235 156-188 (302)
393 2bbs_A Cystic fibrosis transme 92.0 0.065 2.2E-06 50.1 2.5 26 210-235 63-88 (290)
394 2cjw_A GTP-binding protein GEM 92.0 0.073 2.5E-06 46.2 2.7 22 212-233 7-28 (192)
395 3rlf_A Maltose/maltodextrin im 92.0 0.08 2.8E-06 51.3 3.2 25 210-234 28-52 (381)
396 1wms_A RAB-9, RAB9, RAS-relate 92.0 0.077 2.6E-06 45.0 2.8 24 211-234 7-30 (177)
397 3q72_A GTP-binding protein RAD 92.0 0.067 2.3E-06 44.9 2.4 21 213-233 4-24 (166)
398 2it1_A 362AA long hypothetical 92.0 0.081 2.8E-06 51.0 3.2 25 210-234 28-52 (362)
399 2f62_A Nucleoside 2-deoxyribos 92.0 0.82 2.8E-05 38.2 9.0 65 30-98 27-98 (161)
400 1ky3_A GTP-binding protein YPT 92.0 0.078 2.7E-06 45.2 2.8 25 210-234 7-31 (182)
401 1svi_A GTP-binding protein YSX 92.0 0.087 3E-06 45.6 3.2 25 210-234 22-46 (195)
402 1g16_A RAS-related protein SEC 91.9 0.076 2.6E-06 44.6 2.6 23 212-234 4-26 (170)
403 2woo_A ATPase GET3; tail-ancho 91.9 0.18 6.3E-06 48.0 5.6 37 209-245 17-53 (329)
404 3c5c_A RAS-like protein 12; GD 91.9 0.08 2.7E-06 45.7 2.8 24 211-234 21-44 (187)
405 2oze_A ORF delta'; para, walke 91.9 0.094 3.2E-06 49.2 3.5 40 196-238 22-64 (298)
406 1nij_A Hypothetical protein YJ 91.8 0.078 2.7E-06 50.3 2.9 26 210-235 3-28 (318)
407 1r2q_A RAS-related protein RAB 91.8 0.084 2.9E-06 44.3 2.8 23 212-234 7-29 (170)
408 3tui_C Methionine import ATP-b 91.8 0.087 3E-06 50.7 3.2 25 210-234 53-77 (366)
409 4b3f_X DNA-binding protein smu 91.8 0.27 9.1E-06 51.7 7.2 47 195-246 193-239 (646)
410 1z47_A CYSA, putative ABC-tran 91.8 0.084 2.9E-06 50.7 3.0 24 211-234 41-64 (355)
411 1v43_A Sugar-binding transport 91.8 0.088 3E-06 51.0 3.2 25 210-234 36-60 (372)
412 2pjz_A Hypothetical protein ST 91.8 0.072 2.5E-06 49.0 2.4 25 211-235 30-54 (263)
413 3pqc_A Probable GTP-binding pr 91.7 0.098 3.4E-06 45.1 3.2 24 211-234 23-46 (195)
414 3kta_A Chromosome segregation 91.7 0.087 3E-06 45.2 2.8 23 213-235 28-50 (182)
415 1m2o_B GTP-binding protein SAR 91.7 0.083 2.8E-06 45.8 2.6 23 212-234 24-46 (190)
416 2cxx_A Probable GTP-binding pr 91.7 0.076 2.6E-06 45.7 2.4 22 213-234 3-24 (190)
417 3fkq_A NTRC-like two-domain pr 91.7 0.14 4.9E-06 49.7 4.6 37 209-245 141-178 (373)
418 1lw7_A Transcriptional regulat 91.6 0.11 3.8E-06 50.4 3.7 27 211-237 170-196 (365)
419 1z0f_A RAB14, member RAS oncog 91.6 0.091 3.1E-06 44.6 2.8 24 211-234 15-38 (179)
420 4dkx_A RAS-related protein RAB 91.6 0.089 3E-06 46.8 2.8 22 213-234 15-36 (216)
421 3kkq_A RAS-related protein M-R 91.6 0.085 2.9E-06 45.1 2.6 24 211-234 18-41 (183)
422 2fn4_A P23, RAS-related protei 91.6 0.12 4.1E-06 43.9 3.6 25 210-234 8-32 (181)
423 1bif_A 6-phosphofructo-2-kinas 91.6 0.13 4.6E-06 51.7 4.4 26 211-236 39-64 (469)
424 1upt_A ARL1, ADP-ribosylation 91.5 0.12 4.2E-06 43.4 3.6 24 211-234 7-30 (171)
425 4gzl_A RAS-related C3 botulinu 91.5 0.1 3.5E-06 45.7 3.1 41 192-234 13-53 (204)
426 3tmk_A Thymidylate kinase; pho 91.5 0.12 4E-06 46.0 3.5 27 211-237 5-31 (216)
427 3bc1_A RAS-related protein RAB 91.5 0.093 3.2E-06 45.2 2.8 24 211-234 11-34 (195)
428 3cio_A ETK, tyrosine-protein k 91.5 0.23 7.8E-06 46.6 5.7 37 209-245 102-139 (299)
429 3bfv_A CAPA1, CAPB2, membrane 91.5 0.25 8.6E-06 45.6 5.9 51 196-246 65-118 (271)
430 3cbq_A GTP-binding protein REM 91.5 0.071 2.4E-06 46.5 2.0 22 211-232 23-44 (195)
431 1g29_1 MALK, maltose transport 91.4 0.096 3.3E-06 50.8 3.0 24 211-234 29-52 (372)
432 2oil_A CATX-8, RAS-related pro 91.4 0.096 3.3E-06 45.3 2.8 24 211-234 25-48 (193)
433 2g3y_A GTP-binding protein GEM 91.4 0.092 3.2E-06 46.5 2.7 22 212-233 38-59 (211)
434 3ez2_A Plasmid partition prote 91.4 0.27 9.3E-06 48.2 6.3 27 210-236 107-134 (398)
435 2y8e_A RAB-protein 6, GH09086P 91.4 0.093 3.2E-06 44.5 2.6 23 212-234 15-37 (179)
436 4dsu_A GTPase KRAS, isoform 2B 91.4 0.099 3.4E-06 44.8 2.8 23 212-234 5-27 (189)
437 2orv_A Thymidine kinase; TP4A 91.3 0.63 2.2E-05 41.4 8.0 106 211-330 19-126 (234)
438 1mh1_A RAC1; GTP-binding, GTPa 91.3 0.1 3.4E-06 44.7 2.8 23 212-234 6-28 (186)
439 1tf7_A KAIC; homohexamer, hexa 91.3 0.16 5.6E-06 51.8 4.8 39 200-238 270-308 (525)
440 2bme_A RAB4A, RAS-related prot 91.3 0.094 3.2E-06 44.9 2.6 24 211-234 10-33 (186)
441 3t1o_A Gliding protein MGLA; G 91.3 0.11 3.8E-06 44.9 3.1 27 211-237 14-40 (198)
442 3bwd_D RAC-like GTP-binding pr 91.3 0.1 3.5E-06 44.5 2.8 23 212-234 9-31 (182)
443 1c9k_A COBU, adenosylcobinamid 91.3 0.085 2.9E-06 45.2 2.2 21 214-234 2-22 (180)
444 1x6v_B Bifunctional 3'-phospho 91.3 0.13 4.5E-06 53.2 4.0 27 210-236 51-77 (630)
445 2atv_A RERG, RAS-like estrogen 91.2 0.1 3.5E-06 45.3 2.8 24 211-234 28-51 (196)
446 2efe_B Small GTP-binding prote 91.2 0.1 3.5E-06 44.4 2.8 24 211-234 12-35 (181)
447 2a9k_A RAS-related protein RAL 91.2 0.11 3.6E-06 44.5 2.8 24 211-234 18-41 (187)
448 3dz8_A RAS-related protein RAB 91.2 0.1 3.5E-06 45.1 2.8 23 212-234 24-46 (191)
449 2g6b_A RAS-related protein RAB 91.2 0.11 3.7E-06 44.2 2.8 24 211-234 10-33 (180)
450 2iut_A DNA translocase FTSK; n 91.2 0.97 3.3E-05 46.0 10.2 25 212-236 215-239 (574)
451 3tw8_B RAS-related protein RAB 91.1 0.11 3.9E-06 44.0 3.0 25 210-234 8-32 (181)
452 1zd9_A ADP-ribosylation factor 91.1 0.11 3.7E-06 44.8 2.8 24 211-234 22-45 (188)
453 3t5g_A GTP-binding protein RHE 91.1 0.099 3.4E-06 44.6 2.5 24 211-234 6-29 (181)
454 1f6b_A SAR1; gtpases, N-termin 91.1 0.086 2.9E-06 46.0 2.1 23 211-233 25-47 (198)
455 3ea0_A ATPase, para family; al 91.1 0.22 7.4E-06 45.0 4.9 28 211-238 4-32 (245)
456 2ew1_A RAS-related protein RAB 91.0 0.1 3.5E-06 45.7 2.6 24 211-234 26-49 (201)
457 3igf_A ALL4481 protein; two-do 91.0 0.2 6.9E-06 48.5 4.9 35 212-246 3-37 (374)
458 3clv_A RAB5 protein, putative; 91.0 0.11 3.7E-06 45.1 2.8 24 211-234 7-30 (208)
459 1gwn_A RHO-related GTP-binding 91.0 0.1 3.5E-06 45.8 2.6 24 211-234 28-51 (205)
460 3gd7_A Fusion complex of cysti 91.0 0.11 3.8E-06 50.6 3.0 25 210-234 46-70 (390)
461 1pui_A ENGB, probable GTP-bind 91.0 0.071 2.4E-06 46.9 1.5 25 210-234 25-49 (210)
462 2fh5_B SR-beta, signal recogni 91.0 0.11 3.8E-06 45.7 2.8 24 211-234 7-30 (214)
463 2bov_A RAla, RAS-related prote 91.0 0.11 3.9E-06 45.3 2.8 24 211-234 14-37 (206)
464 1vg8_A RAS-related protein RAB 90.9 0.11 3.9E-06 45.3 2.8 24 211-234 8-31 (207)
465 2woj_A ATPase GET3; tail-ancho 90.9 0.27 9.3E-06 47.3 5.7 36 210-245 17-54 (354)
466 2gf9_A RAS-related protein RAB 90.9 0.12 4E-06 44.6 2.8 24 211-234 22-45 (189)
467 2a5j_A RAS-related protein RAB 90.9 0.12 4E-06 44.7 2.8 24 211-234 21-44 (191)
468 3reg_A RHO-like small GTPase; 90.9 0.12 4E-06 44.8 2.8 24 211-234 23-46 (194)
469 1zbd_A Rabphilin-3A; G protein 90.9 0.11 3.8E-06 45.3 2.7 24 211-234 8-31 (203)
470 1zj6_A ADP-ribosylation factor 90.9 0.21 7.3E-06 42.8 4.5 25 210-234 15-39 (187)
471 2fg5_A RAB-22B, RAS-related pr 90.9 0.11 3.7E-06 45.0 2.6 24 211-234 23-46 (192)
472 3hdt_A Putative kinase; struct 90.9 0.14 4.8E-06 45.7 3.4 26 211-236 14-39 (223)
473 1xx6_A Thymidine kinase; NESG, 90.9 0.21 7.1E-06 43.4 4.3 29 210-238 7-35 (191)
474 1z06_A RAS-related protein RAB 90.8 0.12 4.1E-06 44.5 2.8 24 211-234 20-43 (189)
475 1ihu_A Arsenical pump-driving 90.8 0.19 6.6E-06 52.1 4.8 30 209-238 6-35 (589)
476 3oes_A GTPase rhebl1; small GT 90.8 0.11 3.9E-06 45.2 2.6 24 211-234 24-47 (201)
477 2p5s_A RAS and EF-hand domain 90.7 0.12 4.3E-06 44.9 2.8 24 211-234 28-51 (199)
478 3tkl_A RAS-related protein RAB 90.7 0.13 4.3E-06 44.5 2.8 24 211-234 16-39 (196)
479 4bas_A ADP-ribosylation factor 90.7 0.14 4.7E-06 44.4 3.1 25 210-234 16-40 (199)
480 2qe7_A ATP synthase subunit al 90.6 0.45 1.5E-05 47.4 7.0 25 211-235 162-187 (502)
481 2h17_A ADP-ribosylation factor 90.6 0.11 3.7E-06 44.5 2.3 24 211-234 21-44 (181)
482 2gk6_A Regulator of nonsense t 90.6 0.38 1.3E-05 50.3 6.8 47 195-246 184-230 (624)
483 2q3h_A RAS homolog gene family 90.6 0.12 4E-06 45.0 2.5 24 211-234 20-43 (201)
484 2gza_A Type IV secretion syste 90.5 0.13 4.5E-06 49.7 3.0 35 211-246 175-209 (361)
485 1wcv_1 SOJ, segregation protei 90.5 0.19 6.4E-06 46.0 4.0 36 210-245 5-41 (257)
486 1x3s_A RAS-related protein RAB 90.5 0.13 4.5E-06 44.3 2.8 23 212-234 16-38 (195)
487 1ega_A Protein (GTP-binding pr 90.5 0.14 4.8E-06 48.1 3.2 24 211-234 8-31 (301)
488 2obl_A ESCN; ATPase, hydrolase 90.5 0.19 6.5E-06 48.2 4.1 28 210-237 70-97 (347)
489 2o52_A RAS-related protein RAB 90.5 0.11 3.9E-06 45.3 2.4 24 211-234 25-48 (200)
490 1ksh_A ARF-like protein 2; sma 90.5 0.11 3.7E-06 44.6 2.2 25 210-234 17-41 (186)
491 2qu8_A Putative nucleolar GTP- 90.4 0.14 4.9E-06 45.7 3.0 25 210-234 28-52 (228)
492 3llu_A RAS-related GTP-binding 90.4 0.12 4E-06 45.0 2.4 24 211-234 20-43 (196)
493 2b6h_A ADP-ribosylation factor 90.3 0.12 4.1E-06 44.8 2.4 23 211-233 29-51 (192)
494 1jwy_B Dynamin A GTPase domain 90.3 0.15 5E-06 48.2 3.1 25 210-234 23-47 (315)
495 2qnr_A Septin-2, protein NEDD5 90.3 0.11 3.9E-06 48.7 2.3 21 213-233 20-40 (301)
496 3la6_A Tyrosine-protein kinase 90.2 0.4 1.4E-05 44.6 6.0 52 195-246 74-128 (286)
497 2bcg_Y Protein YP2, GTP-bindin 90.2 0.13 4.6E-06 44.9 2.6 24 211-234 8-31 (206)
498 3lxx_A GTPase IMAP family memb 90.2 0.16 5.6E-06 45.7 3.3 25 210-234 28-52 (239)
499 1f2t_A RAD50 ABC-ATPase; DNA d 90.2 0.18 6.1E-06 41.8 3.2 25 211-235 23-47 (149)
500 3cwq_A Para family chromosome 90.2 0.35 1.2E-05 42.6 5.4 30 215-245 5-34 (209)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=8.7e-45 Score=316.45 Aligned_cols=176 Identities=39% Similarity=0.710 Sum_probs=159.1
Q ss_pred CCCCCCCCCCcccEEEcccccccccchHHHHHHHHHhcCcceeeccccccCCCchhHHHHHHHhhcceEEEEecCCcccc
Q 042739 5 SSASSLDAQNKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIETTDISIIIFSKGYASS 84 (505)
Q Consensus 5 ~~~~~~~~~~~~dvFisy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~~~~s 84 (505)
+++|++.+.++|||||||+|+|++.+|+.+|+.+|+++||++|+|++++.+|+.+.++|.+||++|+++|+|+|++|++|
T Consensus 25 ~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S 104 (204)
T 3ozi_A 25 TNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADS 104 (204)
T ss_dssp ---------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGC
T ss_pred CCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccC
Confidence 45566678899999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhh-CCCeEEEEEeecCCccccccccchHHHHHHHHhhChh-hHHHHHHHHHhhccCCCCCCCCCCh
Q 042739 85 KWCLNELVKTLDCKRT-NGQIVIPVFYQIDPSDVRKQSESLEEAFLEHEKNFPD-KVQKWRAALTEASNLSGYDPTESRN 162 (505)
Q Consensus 85 ~~~~~El~~~~~~~~~-~~~~v~pv~~~~~p~~vr~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~ 162 (505)
.||++||.+|++|.+. .+++||||||+|+|++||+|+|+|+++|.+++.++.+ .+++|+.||.+++++.|+++....+
T Consensus 105 ~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~~~~ 184 (204)
T 3ozi_A 105 KWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDK 184 (204)
T ss_dssp HHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECTTSC
T ss_pred cHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCCCCC
Confidence 9999999999999865 5789999999999999999999999999999999865 4999999999999999999998888
Q ss_pred hHHHHHHHHHhhcccccc
Q 042739 163 EAELVEEIVADISKKLED 180 (505)
Q Consensus 163 ~~~~~~~i~~~~~~~~~~ 180 (505)
+.+++++|+.++..++++
T Consensus 185 e~~~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 185 QGAIADKVSADIWSHISK 202 (204)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999988753
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=4.8e-44 Score=307.40 Aligned_cols=171 Identities=40% Similarity=0.716 Sum_probs=143.5
Q ss_pred CCCCcccEEEcccccccccchHHHHHHHHHhcCcceeeccccccCCCchhHHHHHHHhhcceEEEEecCCcccchhhHHH
Q 042739 11 DAQNKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIETTDISIIIFSKGYASSKWCLNE 90 (505)
Q Consensus 11 ~~~~~~dvFisy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~~~~s~~~~~E 90 (505)
+..++|||||||+|+|++.+|+.+|+.+|+++||++|+|++++.+|+.+.++|.+||++|+++|+|+|++|++|.||++|
T Consensus 4 s~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E 83 (176)
T 3jrn_A 4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE 83 (176)
T ss_dssp ---CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred CCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence 34678999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCCeEEEEEeecCCccccccccchHHHHHHHHhhCh-hhHHHHHHHHHhhccCCCCCCCCCChhHHHHHH
Q 042739 91 LVKTLDCKRTNGQIVIPVFYQIDPSDVRKQSESLEEAFLEHEKNFP-DKVQKWRAALTEASNLSGYDPTESRNEAELVEE 169 (505)
Q Consensus 91 l~~~~~~~~~~~~~v~pv~~~~~p~~vr~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 169 (505)
|.++++|.+..+++||||||+++|++||+|+|+|+++|.+++.+.. +.+++|+.||.+++++.|+++. .+|+++|++
T Consensus 84 L~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i~~ 161 (176)
T 3jrn_A 84 LVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLVDK 161 (176)
T ss_dssp HHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC--SCHHHHHHH
T ss_pred HHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC--CCHHHHHHH
Confidence 9999999988899999999999999999999999999999998843 4599999999999999999884 679999999
Q ss_pred HHHhhccccccCCC
Q 042739 170 IVADISKKLEDMSD 183 (505)
Q Consensus 170 i~~~~~~~~~~~~~ 183 (505)
|++++..++++.++
T Consensus 162 Iv~~v~~~l~~~~~ 175 (176)
T 3jrn_A 162 IANEISNKKTIYAT 175 (176)
T ss_dssp HHHHHHTTCC----
T ss_pred HHHHHHHHhcCCCC
Confidence 99999999987664
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.6e-39 Score=339.40 Aligned_cols=298 Identities=15% Similarity=0.209 Sum_probs=221.2
Q ss_pred eechhhHHHHHHhhhcc-CCCceEEEEeccCcchHHHHHHHHHh----hhcccccceEEEeecccccccccHHHHHHHHH
Q 042739 191 IGINSRIEEIKSLLCLE-SHDARIVGIWGMGGIGKTTIASVVFH----QISRYFQGNCFMANVREESNKLGVIRVRDEVI 265 (505)
Q Consensus 191 vGR~~el~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll 265 (505)
|||+.++++|.++|... .++.++|+|+||||+||||||+++++ ++..+|+..+|+. ++.... .++..++..++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~-~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP-KSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST-THHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC-CCHHHHHHHHH
Confidence 49999999999999754 34589999999999999999999996 6788899888885 322221 46788889999
Q ss_pred HHHhCCCC--ccCCCC------chHHHHhccCCC-eEEEEEeCCCCCHHHHHHHhcCcCCCCCCCEEEEEeCcchhhccc
Q 042739 266 SQVLGENL--KVGTLT------IPQNIKKGLQRM-KVLIVLDDVHDEFTQLESLAGVIDRFSPGSRIIITTRDKRVLDKC 336 (505)
Q Consensus 266 ~~~~~~~~--~~~~~~------~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~ 336 (505)
.++..... .....+ ....+++.+.++ ++||||||+| +.+.+ .+.. .+|++||||||+..++..+
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~-~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVV-QEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEEC-CHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCC-Cchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 98876532 111111 157788899996 9999999994 45544 3332 2799999999999888776
Q ss_pred C-CCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhcCCCHHHHHHHHHh-hccCC
Q 042739 337 E-VSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSLYQNSIQQWEDKLHN-LNLIS 414 (505)
Q Consensus 337 ~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~~~l~~-l~~~~ 414 (505)
. ....++|++|+.++|++||.+.++.... .+...+.+.+|+++|+|+||||+.+|+.++.+.. +|...+.. +....
T Consensus 282 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~ 359 (549)
T 2a5y_B 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRG 359 (549)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHC
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhccc
Confidence 5 3367999999999999999999875532 3567788999999999999999999999987743 33333332 11111
Q ss_pred -----------CccHHHHHHHhHhcCChhHHHHHhhhhccCCCCCHHHHHHHHhC--------------CCchhhHHHHH
Q 042739 415 -----------EPNIYKVLKISYDELNSEEKGIFLDIACFFKGEDVDLLTRIQDN--------------PTSMCHRLKIL 469 (505)
Q Consensus 415 -----------~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~~~~l~~l~~~--------------~~~~~~~l~~L 469 (505)
...+...++.+|..|++++|.+|.+||+||+++..+ ..+|.+ .....+++++|
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L 437 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRL 437 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHT
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHH
Confidence 234555666666667777777777999999987766 333332 11233489999
Q ss_pred hhccceEEcC---CCcEEecHHHHHHHHHHHhhcC
Q 042739 470 VGKSLIAISD---RKRLQMHDLLQEMGQTIVRQES 501 (505)
Q Consensus 470 ~~~sLl~~~~---~~~~~~H~lvr~~a~~~~~~e~ 501 (505)
+++|||+... ..+|+||+++|+||++++.+++
T Consensus 438 ~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 438 SKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 9999998653 3479999999999998776543
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.6e-36 Score=348.03 Aligned_cols=303 Identities=21% Similarity=0.294 Sum_probs=237.0
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhh---hcccccceEEEeecccccccccHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQ---ISRYFQGNCFMANVREESNKLGVIRVR 261 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~~ 261 (505)
+.+..||||+.++++|.++|....++.++|+|+||||+||||||.+++++ ....|+..+||..+.... .......+
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~ 199 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD-KSGLLMKL 199 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC-HHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC-chHHHHHH
Confidence 66778999999999999999766667899999999999999999999987 356688777666554422 23444556
Q ss_pred HHHHHHHhCCCCccCCC----Cc-hHHHHhccCCC--eEEEEEeCCCCCHHHHHHHhcCcCCCCCCCEEEEEeCcchhhc
Q 042739 262 DEVISQVLGENLKVGTL----TI-PQNIKKGLQRM--KVLIVLDDVHDEFTQLESLAGVIDRFSPGSRIIITTRDKRVLD 334 (505)
Q Consensus 262 ~~ll~~~~~~~~~~~~~----~~-~~~l~~~l~~~--~~LlVlDdv~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~ 334 (505)
..++..+.......... +. ...++..+.++ ++||||||+ ++...+..+ +++++||||||++.++.
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~-~~~~~~~~~-------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDV-WDPWVLKAF-------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESC-CCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecC-CCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence 66666665443221111 11 56677777766 999999999 555544432 67899999999998774
Q ss_pred c-cCCCcEEEcCC-CCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhcCCCHHHHHHHHHhhcc
Q 042739 335 K-CEVSNIFEVKG-LEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSLYQNSIQQWEDKLHNLNL 412 (505)
Q Consensus 335 ~-~~~~~~~~l~~-L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~~~l~~l~~ 412 (505)
. ......+++++ |+.+++++||...++... +...+.+.+|+++|+|+||||+++|++|+.++ .+|...++.+..
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~ 347 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQN 347 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHS
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhh
Confidence 3 34556799996 999999999998884322 23346688999999999999999999998765 457777766644
Q ss_pred CC-----------CccHHHHHHHhHhcCChhHHHHHhhhhccCCC--CCHHHHHHHHhC-CCchhhHHHHHhhccceEEc
Q 042739 413 IS-----------EPNIYKVLKISYDELNSEEKGIFLDIACFFKG--EDVDLLTRIQDN-PTSMCHRLKILVGKSLIAIS 478 (505)
Q Consensus 413 ~~-----------~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~--~~~~~l~~l~~~-~~~~~~~l~~L~~~sLl~~~ 478 (505)
.. ...+..+|..||+.|++++|.||++||+||++ ++.+.+..+|.. +......|++|+++|||+..
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~ 427 (1249)
T 3sfz_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCN 427 (1249)
T ss_dssp CCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEE
T ss_pred hhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEe
Confidence 32 13589999999999999999999999999987 577889999987 66778899999999999987
Q ss_pred CCCc---EEecHHHHHHHHHHHhhc
Q 042739 479 DRKR---LQMHDLLQEMGQTIVRQE 500 (505)
Q Consensus 479 ~~~~---~~~H~lvr~~a~~~~~~e 500 (505)
.++. |+||+++|+|+++.+.++
T Consensus 428 ~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 428 RNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred cCCCceEEEecHHHHHHHHhhhhHH
Confidence 6654 999999999999987654
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=2.6e-35 Score=311.69 Aligned_cols=299 Identities=21% Similarity=0.293 Sum_probs=221.0
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh---cccccceEEEeecccccccccHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI---SRYFQGNCFMANVREESNKLGVIRVR 261 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~ 261 (505)
+.+..||||+.++++|.++|....++.++|+|+||||+||||||.+++++. ...|+..+||..+.... ...+...+
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~-~~~~~~~l 199 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD-KSGLLMKL 199 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC-HHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc-hHHHHHHH
Confidence 667789999999999999997655668999999999999999999999864 66786555554443332 22233333
Q ss_pred HHHHHHHhCCCC--cc--CCCCc-hHHHHhccCC--CeEEEEEeCCCCCHHHHHHHhcCcCCCCCCCEEEEEeCcchhhc
Q 042739 262 DEVISQVLGENL--KV--GTLTI-PQNIKKGLQR--MKVLIVLDDVHDEFTQLESLAGVIDRFSPGSRIIITTRDKRVLD 334 (505)
Q Consensus 262 ~~ll~~~~~~~~--~~--~~~~~-~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~ 334 (505)
..++..+..... .. ...+. ...++..+.+ +++||||||+ ++...++. ++++++||||||+..+..
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv-~~~~~l~~-------l~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDV-WDSWVLKA-------FDSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEE-CCHHHHHT-------TCSSCEEEEEESCGGGGT
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCC-CCHHHHHH-------hcCCCeEEEECCCcHHHH
Confidence 444444432111 11 11111 4556666655 7899999999 55554443 257899999999987765
Q ss_pred ccCCCcEEEc---CCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhcCCCHHHHHHHHHhhc
Q 042739 335 KCEVSNIFEV---KGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSLYQNSIQQWEDKLHNLN 411 (505)
Q Consensus 335 ~~~~~~~~~l---~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~~~l~~l~ 411 (505)
.+. ...+++ ++|+.+|+.+||...++.. .....+.+.+|+++|+|+||||+++|++++... ..|...+..+.
T Consensus 272 ~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~ 346 (591)
T 1z6t_A 272 SVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQ 346 (591)
T ss_dssp TCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHH
T ss_pred hcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 543 234444 5899999999999988532 122245688999999999999999999997754 35766666654
Q ss_pred cCC-----------CccHHHHHHHhHhcCChhHHHHHhhhhccCCC--CCHHHHHHHHhC-CCchhhHHHHHhhccceEE
Q 042739 412 LIS-----------EPNIYKVLKISYDELNSEEKGIFLDIACFFKG--EDVDLLTRIQDN-PTSMCHRLKILVGKSLIAI 477 (505)
Q Consensus 412 ~~~-----------~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~--~~~~~l~~l~~~-~~~~~~~l~~L~~~sLl~~ 477 (505)
... ...+..++..||+.|+++.|.||+++|+||++ ++.+.+..+|.. .......++.|+++|||..
T Consensus 347 ~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~ 426 (591)
T 1z6t_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFC 426 (591)
T ss_dssp SCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEE
T ss_pred HhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEE
Confidence 322 24689999999999999999999999999875 667788888876 4567789999999999986
Q ss_pred cCC---CcEEecHHHHHHHHHHH
Q 042739 478 SDR---KRLQMHDLLQEMGQTIV 497 (505)
Q Consensus 478 ~~~---~~~~~H~lvr~~a~~~~ 497 (505)
..+ .+|+||+++|+|+++..
T Consensus 427 ~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 427 DRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp EEETTEEEEECCHHHHHHHHHHT
T ss_pred ecCCCccEEEEcHHHHHHHHhhh
Confidence 543 26999999999999873
No 6
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=9.6e-35 Score=308.22 Aligned_cols=278 Identities=17% Similarity=0.182 Sum_probs=204.1
Q ss_pred CCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHh--hhcccccceEEEeecccccccccHHHHHHHHH
Q 042739 188 DGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFH--QISRYFQGNCFMANVREESNKLGVIRVRDEVI 265 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll 265 (505)
...|||+.++++|.++|... ++.++|+|+||||+||||||+++++ +++.+|+.+++|..++.... ...++..++
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d---~~~IL~~Ll 203 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS---PETVLEMLQ 203 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSS---HHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCC---HHHHHHHHH
Confidence 34599999999999999743 3478999999999999999999996 46788998555554544333 333434433
Q ss_pred H---HHhCCCCccCC--------CCc-hHHHHhcc---CCCeEEEEEeCCCCCHHHHHHHhcCcCCCCCCCEEEEEeCcc
Q 042739 266 S---QVLGENLKVGT--------LTI-PQNIKKGL---QRMKVLIVLDDVHDEFTQLESLAGVIDRFSPGSRIIITTRDK 330 (505)
Q Consensus 266 ~---~~~~~~~~~~~--------~~~-~~~l~~~l---~~~~~LlVlDdv~~~~~~~~~l~~~l~~~~~~~~iliTsR~~ 330 (505)
. .+......... .+. ...+++.+ .++++||||||+ ++.+.++.+ .+|++||||||+.
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDV-wd~eqLe~f-------~pGSRILVTTRd~ 275 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKAWNAF-------NLSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESC-CCHHHHHHH-------HSSCCEEEECSCS
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCc-ChHHHHHhh-------CCCeEEEEeccCh
Confidence 3 33211110000 011 34455544 689999999999 566777664 2689999999999
Q ss_pred hhhcccCCCcEEEcC------CCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhcCC--CHHH
Q 042739 331 RVLDKCEVSNIFEVK------GLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSLYQN--SIQQ 402 (505)
Q Consensus 331 ~~~~~~~~~~~~~l~------~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~--~~~~ 402 (505)
.++..+.....+.|+ +|+.+||++||++.. +.. . .++..+ .|+|+||||+++|+.|+.+ +...
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~--~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR--P---QDLPRE---VLTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC--T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC--H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHH
Confidence 876533222234555 899999999999885 222 1 122333 3999999999999999876 6777
Q ss_pred HHHHHHhhccCCCccHHHHHHHhHhcCChhH-HHHHhhhhccCCCC--CHHHHHHHHhC-CC-chhhHHHHHhhccceEE
Q 042739 403 WEDKLHNLNLISEPNIYKVLKISYDELNSEE-KGIFLDIACFFKGE--DVDLLTRIQDN-PT-SMCHRLKILVGKSLIAI 477 (505)
Q Consensus 403 ~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~-~~~l~~la~f~~~~--~~~~l~~l~~~-~~-~~~~~l~~L~~~sLl~~ 477 (505)
|... ....+..+|+.||+.|++++ |.||++||+||+++ +.+.+..+|.. +. .....|++|+++|||+.
T Consensus 347 W~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 347 WKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp HHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSB
T ss_pred HhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEE
Confidence 7652 34679999999999999999 99999999999874 56778899987 32 46788999999999998
Q ss_pred cC-CCcEEecHHHHHHH
Q 042739 478 SD-RKRLQMHDLLQEMG 493 (505)
Q Consensus 478 ~~-~~~~~~H~lvr~~a 493 (505)
++ .++|+||+|+++++
T Consensus 420 d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 420 QPKESTISIPSIYLELK 436 (1221)
T ss_dssp CSSSSEEBCCCHHHHHH
T ss_pred eCCCCEEEehHHHHHHh
Confidence 63 56899999998843
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.97 E-value=2.2e-31 Score=228.80 Aligned_cols=121 Identities=18% Similarity=0.399 Sum_probs=111.0
Q ss_pred CCCCCcccEEEcccccccccchHHHHHHHHHhcCcceeeccccccCCCchhHHHHHHHhhcceEEEEecCCcccchhhHH
Q 042739 10 LDAQNKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIETTDISIIIFSKGYASSKWCLN 89 (505)
Q Consensus 10 ~~~~~~~dvFisy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~~~~s~~~~~ 89 (505)
..+.++|||||||+++| +..|+.+|+..|+++|+++|+|.+++.+|+.|..+|.++|++|+++|+|+|++|++|.||+.
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 35678999999999999 44699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhCCCeEEEEEeecCCccccccccchHHHHHHH
Q 042739 90 ELVKTLDCKRTNGQIVIPVFYQIDPSDVRKQSESLEEAFLEH 131 (505)
Q Consensus 90 El~~~~~~~~~~~~~v~pv~~~~~p~~vr~~~~~~~~~~~~~ 131 (505)
||..++++....+.+||||||+++|++|++++|.|++.|...
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~ 135 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFN 135 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEE
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhh
Confidence 999999988777889999999999999999999988766543
No 8
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.91 E-value=2.1e-26 Score=194.47 Aligned_cols=107 Identities=17% Similarity=0.367 Sum_probs=80.6
Q ss_pred CCCCCCcccEEEcccccccccchHHHHHHHHHh--cCcceeeccccccCCCchhHHHHHHHhhcceEEEEecCCcccchh
Q 042739 9 SLDAQNKYEVFLSFRGEDTRNGFTSHLAAALHR--KQIQFFIDDEELKKGDEISPALSNAIETTDISIIIFSKGYASSKW 86 (505)
Q Consensus 9 ~~~~~~~~dvFisy~~~D~~~~~~~~l~~~L~~--~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~~~~s~~ 86 (505)
|....+.|||||||+++|.+ |+.+|.+.|++ .|+++|+|++++.||+.+.++|.++|++|+++|+|+|++|++|.|
T Consensus 4 ~~r~~k~YDvFISy~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w 81 (146)
T 3ub2_A 4 SSRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW 81 (146)
T ss_dssp CCTTSSSEEEEEECCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred CCCCCCcceEEEeCChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence 35567789999999999987 99999999998 599999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhCCCeEEEEEeecCCccc
Q 042739 87 CLNELVKTLDCKRTNGQIVIPVFYQIDPSDV 117 (505)
Q Consensus 87 ~~~El~~~~~~~~~~~~~v~pv~~~~~p~~v 117 (505)
|..|+..|+.+......+||||++++++.++
T Consensus 82 c~~El~~al~~~~~~~~~vIpv~~~v~~~~l 112 (146)
T 3ub2_A 82 CKYQMLQALTEAPGAEGCTIPLLSGLSRAAY 112 (146)
T ss_dssp HHHHHHHHHHTSSSSSSEEEEEECSCCGGGS
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEcCCChhhC
Confidence 9999999999874344478899988875544
No 9
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.87 E-value=3.6e-23 Score=177.63 Aligned_cols=102 Identities=18% Similarity=0.352 Sum_probs=91.3
Q ss_pred CCCCcccEEEcccccccccchHHHHHHHHHhc--CcceeeccccccCCCchhHHHHHHHh-hcceEEEEecCCcccchhh
Q 042739 11 DAQNKYEVFLSFRGEDTRNGFTSHLAAALHRK--QIQFFIDDEELKKGDEISPALSNAIE-TTDISIIIFSKGYASSKWC 87 (505)
Q Consensus 11 ~~~~~~dvFisy~~~D~~~~~~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~i~~~i~-~s~~~i~v~s~~~~~s~~~ 87 (505)
+..+.|||||||+++|.. ||.+|.+.|+++ |+++|+|++++.||+.+.++|.++|+ +|+++|+|+|++|++|.||
T Consensus 12 ~~~~~yDvFISys~~D~~--fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc 89 (160)
T 2js7_A 12 HMPERFDAFICYCPSDIQ--FVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC 89 (160)
T ss_dssp CCTTCEEEEEECCGGGHH--HHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred CCCcceEEEEEcccccHH--HHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence 345789999999999965 999999999985 69999999999999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHhh-hhCCCeEEEEEeecCC
Q 042739 88 LNELVKTLDCK-RTNGQIVIPVFYQIDP 114 (505)
Q Consensus 88 ~~El~~~~~~~-~~~~~~v~pv~~~~~p 114 (505)
..|+..|+.+. ..++.+||||+|+..+
T Consensus 90 ~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 90 DFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 99999999875 3345679999987553
No 10
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.86 E-value=6.3e-23 Score=178.85 Aligned_cols=103 Identities=20% Similarity=0.404 Sum_probs=88.7
Q ss_pred CCCCCcccEEEcccccccccchHHH-HHHHHHh--cCcceeeccccccCCCchhHHHHHHHhhcceEEEEecCCcccchh
Q 042739 10 LDAQNKYEVFLSFRGEDTRNGFTSH-LAAALHR--KQIQFFIDDEELKKGDEISPALSNAIETTDISIIIFSKGYASSKW 86 (505)
Q Consensus 10 ~~~~~~~dvFisy~~~D~~~~~~~~-l~~~L~~--~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~~~~s~~ 86 (505)
....+.|||||||+++|.. ||.+ |.+.|++ +|+++|+|++++.||+.+.++|.++|++|+++|+|+|++|++|.|
T Consensus 30 ~~~~~~yDvFISys~~D~~--fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDSL--WVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGHH--HHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCHH--HHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 4567889999999999975 9986 9999998 899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhh-hhCCCeEEEEEeecCC
Q 042739 87 CLNELVKTLDCK-RTNGQIVIPVFYQIDP 114 (505)
Q Consensus 87 ~~~El~~~~~~~-~~~~~~v~pv~~~~~p 114 (505)
|..|+..|+.+. ..++.+||||+++..|
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~ 136 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPIP 136 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence 999999998755 4456789999987433
No 11
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.86 E-value=3.1e-23 Score=176.35 Aligned_cols=98 Identities=16% Similarity=0.346 Sum_probs=89.3
Q ss_pred CCCcccEEEcccccccccchHHH-HHHHHHhc--CcceeeccccccCCCchhHHHHHHHhhcceEEEEecCCcccchhhH
Q 042739 12 AQNKYEVFLSFRGEDTRNGFTSH-LAAALHRK--QIQFFIDDEELKKGDEISPALSNAIETTDISIIIFSKGYASSKWCL 88 (505)
Q Consensus 12 ~~~~~dvFisy~~~D~~~~~~~~-l~~~L~~~--g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~~~~s~~~~ 88 (505)
.++.|||||||+++|.. |+.+ |.+.|+++ |+++|+|++++.+|+.+.++|.++|++|+++|+|+|++|++|.||.
T Consensus 2 ~~~~yDvFiSy~~~D~~--~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDAY--WVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGHH--HHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccHH--HHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 35789999999999975 9997 99999987 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hhCCCeEEEEEee
Q 042739 89 NELVKTLDCK-RTNGQIVIPVFYQ 111 (505)
Q Consensus 89 ~El~~~~~~~-~~~~~~v~pv~~~ 111 (505)
.|+..|+.+. ..++.+||||+++
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~ 103 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLE 103 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESS
T ss_pred HHHHHHHHHHHhcCCCEEEEEEec
Confidence 9999988543 4456789999976
No 12
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.85 E-value=2e-20 Score=184.31 Aligned_cols=287 Identities=14% Similarity=0.108 Sum_probs=175.0
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeeccccc---ccccHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREES---NKLGVIRVR 261 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~---~~~~~~~~~ 261 (505)
..+..|+||+.+++.|.+++..+ +++.|+|++|+|||+|+++++++.. .+|+. +.... .......++
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILID-CRELYAERGHITREELI 78 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE-HHHHHHTTTCBCHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE-eecccccccCCCHHHHH
Confidence 56678999999999999998642 6899999999999999999998752 44443 22221 011233333
Q ss_pred HHHHHHHhCC--------------CCccC-CCCc----hHHHHhccCC-CeEEEEEeCCCCC--------HHHHHHHhcC
Q 042739 262 DEVISQVLGE--------------NLKVG-TLTI----PQNIKKGLQR-MKVLIVLDDVHDE--------FTQLESLAGV 313 (505)
Q Consensus 262 ~~ll~~~~~~--------------~~~~~-~~~~----~~~l~~~l~~-~~~LlVlDdv~~~--------~~~~~~l~~~ 313 (505)
..+...+... ..... .... ...+.+.... ++++|||||+++- .+.+..+...
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 3333322110 00000 0011 2233333322 3899999999631 2233333322
Q ss_pred cCCCCCCCEEEEEeCcchhhcc----------c--CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHh
Q 042739 314 IDRFSPGSRIIITTRDKRVLDK----------C--EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYA 381 (505)
Q Consensus 314 l~~~~~~~~iliTsR~~~~~~~----------~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~ 381 (505)
... ..+.++|+|++....... . .....+.+.+|+.+|+.+++.......... ...+.+..+++.|
T Consensus 159 ~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~~~t 235 (350)
T 2qen_A 159 YDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAVELL 235 (350)
T ss_dssp HHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHH
T ss_pred HHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHh
Confidence 211 257889999886532111 1 112479999999999999998754221111 1245678999999
Q ss_pred cCChHHHHHHHHhhcC-CCHHHHHHHHHhhccCCCccHHHHHHHhHhcC---ChhHHHHHhhhhccCCCCCHHHHHHHH-
Q 042739 382 DGNPLALEVLGSSLYQ-NSIQQWEDKLHNLNLISEPNIYKVLKISYDEL---NSEEKGIFLDIACFFKGEDVDLLTRIQ- 456 (505)
Q Consensus 382 ~G~PLal~~~~~~l~~-~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L---~~~~~~~l~~la~f~~~~~~~~l~~l~- 456 (505)
+|+|+++..++..+.. .+...+.. .+ .+.+...+...+..+ ++..+.++..+|+ ...+...+...+
T Consensus 236 gG~P~~l~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~~ 306 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGDFGRAMK---RT----LEVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYLA 306 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHH---HH----HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccccHhHHHH---HH----HHHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 9999999998875432 22222211 11 011222233334444 7888999999998 346777776665
Q ss_pred ----hC-CCchhhHHHHHhhccceEEcCCCcEE-ecHHHHHHHH
Q 042739 457 ----DN-PTSMCHRLKILVGKSLIAISDRKRLQ-MHDLLQEMGQ 494 (505)
Q Consensus 457 ----~~-~~~~~~~l~~L~~~sLl~~~~~~~~~-~H~lvr~~a~ 494 (505)
.. ......+++.|.+.|||... ++.|. .|+++++|.+
T Consensus 307 ~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 307 VKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 22 23456789999999999987 45665 5899998864
No 13
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.84 E-value=2e-21 Score=166.55 Aligned_cols=99 Identities=20% Similarity=0.340 Sum_probs=86.8
Q ss_pred CcccEEEcccccccc---------cchHHHHH-HHHH-hcCcceeeccccccCCCchhHHHHHHHhhcceEEEEecCCcc
Q 042739 14 NKYEVFLSFRGEDTR---------NGFTSHLA-AALH-RKQIQFFIDDEELKKGDEISPALSNAIETTDISIIIFSKGYA 82 (505)
Q Consensus 14 ~~~dvFisy~~~D~~---------~~~~~~l~-~~L~-~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~~~ 82 (505)
+.|||||||+++|+. +.|+.++. +.|+ +.|+++|+|++++.||+.+.++|.++|++|+++|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 369999999999963 44776645 5799 799999999999999999999999999999999999999997
Q ss_pred -cchhhHHHHHHHHHhh-hhCCCeEEEEEeec
Q 042739 83 -SSKWCLNELVKTLDCK-RTNGQIVIPVFYQI 112 (505)
Q Consensus 83 -~s~~~~~El~~~~~~~-~~~~~~v~pv~~~~ 112 (505)
.|.||..|+..|+.+. ..++.+||||++..
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~ 112 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSE 112 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecc
Confidence 9999999999999877 55678999998763
No 14
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.83 E-value=1.9e-19 Score=177.65 Aligned_cols=282 Identities=16% Similarity=0.161 Sum_probs=169.3
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccc-----cccccHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREE-----SNKLGVIR 259 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~-----~~~~~~~~ 259 (505)
..+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|+.++++..... .+|+. +... .....+..
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD-LRKFEERNYISYKDFLL 79 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE-GGGGTTCSCCCHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE-chhhccccCCCHHHHHH
Confidence 566789999999999999 853 599999999999999999999886432 34444 3221 11122222
Q ss_pred HHHHHHHH----------HhCCCC---------ccC----CCCchHHHHhccCC---CeEEEEEeCCCC-----CHHHHH
Q 042739 260 VRDEVISQ----------VLGENL---------KVG----TLTIPQNIKKGLQR---MKVLIVLDDVHD-----EFTQLE 308 (505)
Q Consensus 260 ~~~~ll~~----------~~~~~~---------~~~----~~~~~~~l~~~l~~---~~~LlVlDdv~~-----~~~~~~ 308 (505)
.+.+.+.. ...... ... .......+.+.+.. ++++|||||+++ ..+.+.
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHH
Confidence 22222221 111100 000 01112223222221 499999999963 122222
Q ss_pred HHhcCcCCCCCCCEEEEEeCcchhhcc----------c-CC-CcEEEcCCCCHhHHHHHHHHhhcC-CCCCChhHHHHHH
Q 042739 309 SLAGVIDRFSPGSRIIITTRDKRVLDK----------C-EV-SNIFEVKGLEHNKAFELFCRKAFG-QNNRSHDLYQLSQ 375 (505)
Q Consensus 309 ~l~~~l~~~~~~~~iliTsR~~~~~~~----------~-~~-~~~~~l~~L~~~ea~~L~~~~~~~-~~~~~~~~~~~~~ 375 (505)
.+..... ...+.++|+|++....... . +. ...+.+.+|+.+++.+++...... +.... . ..
T Consensus 160 ~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~----~~ 233 (357)
T 2fna_A 160 ALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-D----YE 233 (357)
T ss_dssp HHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-C----HH
T ss_pred HHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-c----HH
Confidence 2222111 1246789999987642111 1 11 257999999999999999875421 11111 1 27
Q ss_pred HHHHHhcCChHHHHHHHHhhcC-CCHHHHHHHHHhhccCCCccHHHHHHHhHh-------cCChhHHHHHhhhhccCCCC
Q 042739 376 RVVCYADGNPLALEVLGSSLYQ-NSIQQWEDKLHNLNLISEPNIYKVLKISYD-------ELNSEEKGIFLDIACFFKGE 447 (505)
Q Consensus 376 ~i~~~~~G~PLal~~~~~~l~~-~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~-------~L~~~~~~~l~~la~f~~~~ 447 (505)
.+++.|+|+|+++..++..+.. .+...+....- +.+...+...+. .|++..+.++..+|+ + .
T Consensus 234 ~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~- 303 (357)
T 2fna_A 234 VVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTL-------EYAKKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G- 303 (357)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHH-------HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-
T ss_pred HHHHHhCCCHHHHHHHHHHHccccchHHHHHHHH-------HHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-
Confidence 8999999999999999876532 23333322110 111222222222 678889999999998 3 3
Q ss_pred CHHHHHHHH----h--C-CCchhhHHHHHhhccceEEcCCCcEE-ecHHHHHHH
Q 042739 448 DVDLLTRIQ----D--N-PTSMCHRLKILVGKSLIAISDRKRLQ-MHDLLQEMG 493 (505)
Q Consensus 448 ~~~~l~~l~----~--~-~~~~~~~l~~L~~~sLl~~~~~~~~~-~H~lvr~~a 493 (505)
+...+...+ + . ......+++.|.+.|||...+ +.|+ .|++++++.
T Consensus 304 ~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 777776433 2 1 224567899999999999874 5565 689999875
No 15
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.77 E-value=9.4e-18 Score=169.04 Aligned_cols=294 Identities=14% Similarity=0.063 Sum_probs=170.5
Q ss_pred CCCCCceechhhHHHHHHhh-hc--cC--CCceEEEE--eccCcchHHHHHHHHHhhhcccc-----cc-eEEEeecccc
Q 042739 185 TDLDGFIGINSRIEEIKSLL-CL--ES--HDARIVGI--WGMGGIGKTTIASVVFHQISRYF-----QG-NCFMANVREE 251 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L-~~--~~--~~~~~v~I--~G~~GiGKTtLa~~~~~~~~~~f-----~~-~~~~~~~~~~ 251 (505)
..+..|+||+.+++.|.+++ .. .. ...+.+.| +|++|+|||+|++.+++.....+ .. .+|+. +
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~-~--- 94 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN-A--- 94 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE-G---
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE-C---
Confidence 44578999999999999988 52 12 23567778 99999999999999998875432 22 33443 2
Q ss_pred cccccHHHHHHHHHHHHhCCCCccC-CCCc-hHHHHhccC--CCeEEEEEeCCCC-------CHHHHHHHhcCcCCC---
Q 042739 252 SNKLGVIRVRDEVISQVLGENLKVG-TLTI-PQNIKKGLQ--RMKVLIVLDDVHD-------EFTQLESLAGVIDRF--- 317 (505)
Q Consensus 252 ~~~~~~~~~~~~ll~~~~~~~~~~~-~~~~-~~~l~~~l~--~~~~LlVlDdv~~-------~~~~~~~l~~~l~~~--- 317 (505)
........++..++..+........ .... ...+.+.+. +++++|||||+++ ..+.+..+...+...
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 2233555667777777644321111 1111 344444443 6799999999952 234444443333211
Q ss_pred C--CCCEEEEEeCcchhhccc---------CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhc----
Q 042739 318 S--PGSRIIITTRDKRVLDKC---------EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYAD---- 382 (505)
Q Consensus 318 ~--~~~~iliTsR~~~~~~~~---------~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~---- 382 (505)
+ .+..+|+||+........ .....+.+++|+.+++.++|...+...........+.+..+++.|+
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhcc
Confidence 2 345578788755322110 1122399999999999999976542111111123467788999999
Q ss_pred --CChHHHHHHHHhhc------C---CCHHHHHHHHHhhccCCCccHHHHHHHhHhcCChhHHHHHhhhhccC----CCC
Q 042739 383 --GNPLALEVLGSSLY------Q---NSIQQWEDKLHNLNLISEPNIYKVLKISYDELNSEEKGIFLDIACFF----KGE 447 (505)
Q Consensus 383 --G~PLal~~~~~~l~------~---~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~----~~~ 447 (505)
|+|..+..++.... + .+...+...+..... ...+..++..|++..+.+|..++.+. ..+
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 99987766554321 1 122333332222110 22344456789999999999898753 234
Q ss_pred CHHHHH----HHH-hC-C------CchhhHHHHHhhccceEEcC-----CCcEEecHH
Q 042739 448 DVDLLT----RIQ-DN-P------TSMCHRLKILVGKSLIAISD-----RKRLQMHDL 488 (505)
Q Consensus 448 ~~~~l~----~l~-~~-~------~~~~~~l~~L~~~sLl~~~~-----~~~~~~H~l 488 (505)
+...+. .+. .. + .....+++.|.+.|||.... .|+|++|.+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l 386 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRL 386 (412)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEE
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEe
Confidence 443322 122 11 2 22456799999999998642 344555443
No 16
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.68 E-value=5.8e-15 Score=147.09 Aligned_cols=277 Identities=12% Similarity=0.068 Sum_probs=168.8
Q ss_pred CCCceechhhHHHHHHhhhc--cCCCceEEEEeccCcchHHHHHHHHHhhhcccc-------c-ceEEEeecccccccc-
Q 042739 187 LDGFIGINSRIEEIKSLLCL--ESHDARIVGIWGMGGIGKTTIASVVFHQISRYF-------Q-GNCFMANVREESNKL- 255 (505)
Q Consensus 187 ~~~fvGR~~el~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-------~-~~~~~~~~~~~~~~~- 255 (505)
+..|+||+.+++.+..++.. .....+.+.|+|++|+|||+||+.+++.+.... . ..+++. +. ...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~~---~~~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-CR---EVGG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-HH---HHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-Cc---cCCC
Confidence 47799999999999988864 234467899999999999999999998864431 2 233333 22 222
Q ss_pred cHHHHHHHHHHHHhCCCCccCCC--Cc-hHHHHhccCCCeEEEEEeCCCC-----CHHH-HHHHhcCcCCCCCCCEEEEE
Q 042739 256 GVIRVRDEVISQVLGENLKVGTL--TI-PQNIKKGLQRMKVLIVLDDVHD-----EFTQ-LESLAGVIDRFSPGSRIIIT 326 (505)
Q Consensus 256 ~~~~~~~~ll~~~~~~~~~~~~~--~~-~~~l~~~l~~~~~LlVlDdv~~-----~~~~-~~~l~~~l~~~~~~~~iliT 326 (505)
....++..++..+.+........ .. ...+...+..++.+||||+++. ..+. +..+.... .+..+|+|
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~ 170 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMI 170 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEE
Confidence 45566667777664433222111 11 5566667776666999999941 1222 33444322 67788888
Q ss_pred eCcchhhccc------CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhc---CChHHHH-HHHHhh-
Q 042739 327 TRDKRVLDKC------EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYAD---GNPLALE-VLGSSL- 395 (505)
Q Consensus 327 sR~~~~~~~~------~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PLal~-~~~~~l- 395 (505)
|+.......+ .....+.+++++.++..+++...+...........+..+.+++.++ |+|..+. .+-...
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 8875321111 1123899999999999999998752110011112345677888888 9998443 322221
Q ss_pred -c----CCCHHHHHHHHHhhccCCCccHHHHHHHhHhcCChhHHHHHhhhhccCC-CCCHHHHHHHHhC-C------Cch
Q 042739 396 -Y----QNSIQQWEDKLHNLNLISEPNIYKVLKISYDELNSEEKGIFLDIACFFK-GEDVDLLTRIQDN-P------TSM 462 (505)
Q Consensus 396 -~----~~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~-~~~~~~l~~l~~~-~------~~~ 462 (505)
. ..+.+.+...+.... ...+..+++.|++..+.++..++.... +-.......+... + ...
T Consensus 251 ~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 323 (384)
T 2qby_B 251 LASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRF 323 (384)
T ss_dssp HTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHH
Confidence 1 134555555554431 235667788999999998888886111 1011122233221 1 224
Q ss_pred hhHHHHHhhccceEEc
Q 042739 463 CHRLKILVGKSLIAIS 478 (505)
Q Consensus 463 ~~~l~~L~~~sLl~~~ 478 (505)
..+++.|.+.|||+..
T Consensus 324 ~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 324 SDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhCCCEEEE
Confidence 5679999999999863
No 17
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.65 E-value=3.9e-15 Score=148.33 Aligned_cols=282 Identities=13% Similarity=0.099 Sum_probs=164.1
Q ss_pred CCCCCceechhhHHHHHHhhhcc--CCCceEEEEeccCcchHHHHHHHHHhhhcccc--c-ceEEEeecccccccccHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLE--SHDARIVGIWGMGGIGKTTIASVVFHQISRYF--Q-GNCFMANVREESNKLGVIR 259 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~-~~~~~~~~~~~~~~~~~~~ 259 (505)
..+..|+||+.+++.|.+++... ....+.+.|+|++|+|||+|++.++..+...+ . ..+++. .. .......
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~~---~~~~~~~ 92 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-TR---QIDTPYR 92 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-HH---HHCSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-CC---CCCCHHH
Confidence 45578999999999999998742 34467899999999999999999998876543 2 233333 21 1223334
Q ss_pred HHHHHHHHHhCCCCccC-CCCc-hHHHHhccC--CCeEEEEEeCCCC-----CHHHHHHHhcCcCC-CCCCCEEEEEeCc
Q 042739 260 VRDEVISQVLGENLKVG-TLTI-PQNIKKGLQ--RMKVLIVLDDVHD-----EFTQLESLAGVIDR-FSPGSRIIITTRD 329 (505)
Q Consensus 260 ~~~~ll~~~~~~~~~~~-~~~~-~~~l~~~l~--~~~~LlVlDdv~~-----~~~~~~~l~~~l~~-~~~~~~iliTsR~ 329 (505)
++..++..+........ .... ...+.+.+. +++.+||||+++. +.+.+..+...+.. ...+..+|+||+.
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 44444443322111111 0111 333434333 4589999999941 13344444333311 1345667888876
Q ss_pred chhhcccC-------CCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhc---CChHHHHHHHHhhc---
Q 042739 330 KRVLDKCE-------VSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYAD---GNPLALEVLGSSLY--- 396 (505)
Q Consensus 330 ~~~~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PLal~~~~~~l~--- 396 (505)
......+. ....+.+++++.++..+++...+...........+....+++.++ |+|..+..+.....
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 53322211 125799999999999999987652111111223456677888888 99995544433221
Q ss_pred ---C---CCHHHHHHHHHhhccCCCccHHHHHHHhHhcCChhHHHHHhhhhccCC----CCCHHH-------HHHHHhC-
Q 042739 397 ---Q---NSIQQWEDKLHNLNLISEPNIYKVLKISYDELNSEEKGIFLDIACFFK----GEDVDL-------LTRIQDN- 458 (505)
Q Consensus 397 ---~---~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~----~~~~~~-------l~~l~~~- 458 (505)
+ -+...+...+... ....+...+..+++..+.++..++.+.. .++... +...++.
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~-------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~ 325 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEI-------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVE 325 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHH-------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCC
T ss_pred HhcCCCccCHHHHHHHHHHH-------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCC
Confidence 1 2334444443332 1245667788999999988888875321 133322 2222222
Q ss_pred C---CchhhHHHHHhhccceEE
Q 042739 459 P---TSMCHRLKILVGKSLIAI 477 (505)
Q Consensus 459 ~---~~~~~~l~~L~~~sLl~~ 477 (505)
. .....+++.|.+.|+|+.
T Consensus 326 ~~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 326 AVTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEE
Confidence 2 235678999999999986
No 18
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.63 E-value=2.6e-14 Score=142.58 Aligned_cols=305 Identities=12% Similarity=0.071 Sum_probs=181.0
Q ss_pred CCCCCceechhhHHHHHHhhhcc----CCCceEEEEeccCcchHHHHHHHHHhhhcccc-cceEEEeecccccccccHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLE----SHDARIVGIWGMGGIGKTTIASVVFHQISRYF-QGNCFMANVREESNKLGVIR 259 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~ 259 (505)
..++.++||+.+++.|..++... .+..+.+.|+|++|+|||+|++.++....... ...+++. .........
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~ 89 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTA 89 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHH
Confidence 34577999999999999988642 21234899999999999999999998876542 2233333 222334455
Q ss_pred HHHHHHHHHhCCCCccCC-C-CchHHHHhcc--CCCeEEEEEeCCC-CCHHHHHHHhcCcCCCC----CCCEEEEEeCcc
Q 042739 260 VRDEVISQVLGENLKVGT-L-TIPQNIKKGL--QRMKVLIVLDDVH-DEFTQLESLAGVIDRFS----PGSRIIITTRDK 330 (505)
Q Consensus 260 ~~~~ll~~~~~~~~~~~~-~-~~~~~l~~~l--~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~----~~~~iliTsR~~ 330 (505)
++..++..+......... . .....+...+ .+++.+||||+++ -+...+..+...+.... .+..+|++|+..
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 666666665432111110 1 1123333333 2568999999995 23455556555443322 467788888765
Q ss_pred hhhcccC-------CCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHh---------cCChHHHHHHHHh
Q 042739 331 RVLDKCE-------VSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYA---------DGNPLALEVLGSS 394 (505)
Q Consensus 331 ~~~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~---------~G~PLal~~~~~~ 394 (505)
....... ....+.+++++.++..+++...+...........+....+++.+ +|+|..+..+...
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~ 249 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHH
Confidence 3222211 12369999999999999998876321001122356788899999 7998776655443
Q ss_pred hc------C---CCHHHHHHHHHhhccCCCccHHHHHHHhHhcCChhHHHHHhhhhccC---C--CCCHHHHHHHHh---
Q 042739 395 LY------Q---NSIQQWEDKLHNLNLISEPNIYKVLKISYDELNSEEKGIFLDIACFF---K--GEDVDLLTRIQD--- 457 (505)
Q Consensus 395 l~------~---~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~---~--~~~~~~l~~l~~--- 457 (505)
.. + .+.............. .+...+..|++..+.++..++.+. . .++...+...+.
T Consensus 250 a~~~a~~~~~~~i~~~~v~~~~~~~~~~-------~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEVLFG-------ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHSCC-------CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHhhh-------hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 21 1 1333333333332211 123446788988898888888654 2 344444433211
Q ss_pred -C----C---CchhhHHHHHhhccceEEcCC-------CcEE-------ecHHHHHHHHHHHhhc
Q 042739 458 -N----P---TSMCHRLKILVGKSLIAISDR-------KRLQ-------MHDLLQEMGQTIVRQE 500 (505)
Q Consensus 458 -~----~---~~~~~~l~~L~~~sLl~~~~~-------~~~~-------~H~lvr~~a~~~~~~e 500 (505)
. . ......++.|...|||..... |++. .|++++.+...++.+|
T Consensus 323 ~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 323 EEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 1 1 234468999999999987432 3322 3677777776666554
No 19
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.59 E-value=5.9e-14 Score=139.80 Aligned_cols=283 Identities=12% Similarity=0.051 Sum_probs=166.0
Q ss_pred CCCCCceechhhHHHHHHhhhcc--CCCceEEEEeccCcchHHHHHHHHHhhhcccc-----c-ceEEEeeccccccccc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLE--SHDARIVGIWGMGGIGKTTIASVVFHQISRYF-----Q-GNCFMANVREESNKLG 256 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~-~~~~~~~~~~~~~~~~ 256 (505)
..+..|+||+.+++.+..++... ....+.+.|+|++|+|||+||+.+++...... . ..+++. ......
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~ 91 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRET 91 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCS
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCC
Confidence 34578999999999999998642 34567899999999999999999998874432 2 223333 222334
Q ss_pred HHHHHHHHHHHHhCCCCccCC-CCc-hHHHHhcc--CCCeEEEEEeCCCC------CHHHHHHHhcCcCCC--CCCCEEE
Q 042739 257 VIRVRDEVISQVLGENLKVGT-LTI-PQNIKKGL--QRMKVLIVLDDVHD------EFTQLESLAGVIDRF--SPGSRII 324 (505)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~~-~~~-~~~l~~~l--~~~~~LlVlDdv~~------~~~~~~~l~~~l~~~--~~~~~il 324 (505)
...++..++..+......... ... ...+...+ .+++.+||||+++. ..+.+..+....... ..+..+|
T Consensus 92 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I 171 (387)
T 2v1u_A 92 PYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLV 171 (387)
T ss_dssp HHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEE
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEE
Confidence 555666666666432211111 111 34444444 35689999999951 122233333322211 3466788
Q ss_pred EEeCcchhhccc-----C--CCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhc---CChHHHHHHHHh
Q 042739 325 ITTRDKRVLDKC-----E--VSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYAD---GNPLALEVLGSS 394 (505)
Q Consensus 325 iTsR~~~~~~~~-----~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PLal~~~~~~ 394 (505)
+||+.......+ . ....+.+++++.++..+++...+...........+..+.+++.++ |+|..+..+...
T Consensus 172 ~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 172 GITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp EECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred EEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 888765321111 1 124789999999999999987752100011112345677888888 999554433322
Q ss_pred hc------C---CCHHHHHHHHHhhccCCCccHHHHHHHhHhcCChhHHHHHhhhhccCCC---CCHHHHH----HHHhC
Q 042739 395 LY------Q---NSIQQWEDKLHNLNLISEPNIYKVLKISYDELNSEEKGIFLDIACFFKG---EDVDLLT----RIQDN 458 (505)
Q Consensus 395 l~------~---~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~---~~~~~l~----~l~~~ 458 (505)
.. + -+...+...+... ....+..++..|++..+.++..++.+..+ +....+. .++..
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~-------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEI-------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTST 324 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHH-------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHH-------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh
Confidence 21 1 2344454444433 12346667889999999888877743222 3333222 22211
Q ss_pred ----C---CchhhHHHHHhhccceEEc
Q 042739 459 ----P---TSMCHRLKILVGKSLIAIS 478 (505)
Q Consensus 459 ----~---~~~~~~l~~L~~~sLl~~~ 478 (505)
. ..+...++.|...|+++..
T Consensus 325 ~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 325 LGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 1 1345689999999999863
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.58 E-value=1.1e-15 Score=167.81 Aligned_cols=102 Identities=16% Similarity=0.316 Sum_probs=92.1
Q ss_pred CCCCcccEEEcccccccccchH-HHHHHHHHh-----cCcceeeccccccCCCchhHHHHHHHhhcceEEEEecCCcccc
Q 042739 11 DAQNKYEVFLSFRGEDTRNGFT-SHLAAALHR-----KQIQFFIDDEELKKGDEISPALSNAIETTDISIIIFSKGYASS 84 (505)
Q Consensus 11 ~~~~~~dvFisy~~~D~~~~~~-~~l~~~L~~-----~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~~~~s 84 (505)
...+.||+||||+++|.. || .+|.+.||. .|+++|++++|+.||+.+.++|.++|++|+++|+|+|++|+.|
T Consensus 666 ~~~~~yd~fisy~~~d~~--~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKDFT--WVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTTHH--HHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCcHH--HHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 456799999999999976 99 679999985 6899999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhh-hhCCCeEEEEEeecCC
Q 042739 85 KWCLNELVKTLDCK-RTNGQIVIPVFYQIDP 114 (505)
Q Consensus 85 ~~~~~El~~~~~~~-~~~~~~v~pv~~~~~p 114 (505)
.||..|+..|+.+. .+++.+||||+++..|
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 99999999988776 4556789999987544
No 21
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.47 E-value=8.8e-13 Score=122.21 Aligned_cols=199 Identities=13% Similarity=0.091 Sum_probs=120.1
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEV 264 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 264 (505)
.....|+||+.+++.|..++..+. ..+.+.|+|++|+|||+||+.+++.+...+....... ..... ...+
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~ 89 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC-----GVCDN----CREI 89 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC-----SCSHH----HHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC-----cccHH----HHHH
Confidence 344569999999999999997532 2458899999999999999999987644321100000 00000 0000
Q ss_pred HHHHhCCCCcc--CCCC---chHHHHhc-----cCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcchhh
Q 042739 265 ISQVLGENLKV--GTLT---IPQNIKKG-----LQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDKRVL 333 (505)
Q Consensus 265 l~~~~~~~~~~--~~~~---~~~~l~~~-----l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~ 333 (505)
........... .... ....+.+. ..+++.+|||||++ .+...+..+...+.....+..+|+||+.....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred hccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 00000000000 0000 01122222 23467999999995 24556666666555445677888888765322
Q ss_pred c--ccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 042739 334 D--KCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSL 395 (505)
Q Consensus 334 ~--~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 395 (505)
. .......+++++++.++..+++...+..... ....+....|++.|+|+|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 1123468999999999999999887633221 1234667889999999999998876544
No 22
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.40 E-value=4.7e-12 Score=115.57 Aligned_cols=188 Identities=14% Similarity=0.108 Sum_probs=116.1
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc-ccceEEEeecccccccccHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY-FQGNCFMANVREESNKLGVIRVRDE 263 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~ 263 (505)
.....++||+..++.+.+++.... .+.+.|+|++|+|||+||+.+++.+... +...+...... ...... ....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~ 87 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS---DERGID-VVRH 87 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT---CTTCHH-HHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc---cccChH-HHHH
Confidence 444669999999999999997532 3348999999999999999999876433 22222222111 111111 1122
Q ss_pred HHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcchhh-cc-cCCCc
Q 042739 264 VISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDKRVL-DK-CEVSN 340 (505)
Q Consensus 264 ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~-~~-~~~~~ 340 (505)
.+....... ....+++.+|||||++ -.......+...+.....++.+|+||+..... .. .....
T Consensus 88 ~~~~~~~~~-------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 88 KIKEFARTA-------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHHHHHTSC-------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHhccc-------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 222211110 0113568899999995 23344555554444445677888888765321 11 12334
Q ss_pred EEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHH
Q 042739 341 IFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGS 393 (505)
Q Consensus 341 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 393 (505)
.+.+++++.++..+++...+..... ....+....+++.++|+|..+..+..
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGV--KITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 7999999999999999887632111 12245677899999999997655443
No 23
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=3.5e-11 Score=116.59 Aligned_cols=186 Identities=16% Similarity=0.213 Sum_probs=113.8
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc-ccceEEEeecccccccccHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY-FQGNCFMANVREESNKLGVIRVRDE 263 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~ 263 (505)
.....++|++..++.|.+++..+. .+.+.|+|++|+|||++|+.+++.+... +...+...+. ....+ ...+.+
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~---~~~~~-~~~i~~ 91 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA---SDDRG-IDVVRN 91 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT---TSCCS-HHHHHT
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC---ccccC-hHHHHH
Confidence 344669999999999999997533 2338999999999999999999886432 2222222111 11111 122222
Q ss_pred HHHHHhCCCCccCCCCchHHHHhcc-CCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcchh-hcc-cCCC
Q 042739 264 VISQVLGENLKVGTLTIPQNIKKGL-QRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDKRV-LDK-CEVS 339 (505)
Q Consensus 264 ll~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~-~~~-~~~~ 339 (505)
++..+.... ..+ .+++.++||||++ -.......+...+.....++.+|+||..... ... ....
T Consensus 92 ~~~~~~~~~-------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 92 QIKHFAQKK-------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHHBC-------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHHhcc-------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 222221000 011 3458899999995 2334455555544444567788888865422 111 1234
Q ss_pred cEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHH-HHH
Q 042739 340 NIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLAL-EVL 391 (505)
Q Consensus 340 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal-~~~ 391 (505)
..+++.+++.++..+++...+...+. ....+.+..+++.++|+|..+ ..+
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDV--KYTNDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 58999999999999999876632111 122456788999999999654 444
No 24
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.25 E-value=4.4e-10 Score=108.92 Aligned_cols=256 Identities=15% Similarity=0.146 Sum_probs=149.8
Q ss_pred CCCCCceechhhHHHHHHhhhcc---CCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLE---SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVR 261 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 261 (505)
.....|+|++..+..+..++... ....+.+.|+|++|+|||+||+.+++.....| .++. ...... ..
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~~~~~~---~~--- 78 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-GPAIEK---PG--- 78 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-TTTCCS---HH---
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-ccccCC---hH---
Confidence 44567999999999998887531 22346788999999999999999998764322 1222 111111 11
Q ss_pred HHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCC-CHHHHHHHhcCcCCC------------------CCCCE
Q 042739 262 DEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHD-EFTQLESLAGVIDRF------------------SPGSR 322 (505)
Q Consensus 262 ~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~l~~~------------------~~~~~ 322 (505)
++... +...+ .++.+|+||+++. .......+...+... .++..
T Consensus 79 -~l~~~----------------l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 79 -DLAAI----------------LANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp -HHHHH----------------HTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred -HHHHH----------------HHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 11111 11101 3456999999952 223333333222110 12456
Q ss_pred EEEEeCcchhh-ccc-CC-CcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhcCC-
Q 042739 323 IIITTRDKRVL-DKC-EV-SNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSLYQN- 398 (505)
Q Consensus 323 iliTsR~~~~~-~~~-~~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~- 398 (505)
+|.||...... ..+ .. ...+.+++++.++..+++...+..... ....+....+++.++|+|..+..+...+...
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV--RITEEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 77666644221 111 11 257999999999999999887643222 2234678889999999999988776654321
Q ss_pred --------CHHHHHHHHHhhccCCCccHHHHHHHhHhcCChhHHHHHhhhh-cc-CCCCCHHHHHHHHhC-CCchhhHHH
Q 042739 399 --------SIQQWEDKLHNLNLISEPNIYKVLKISYDELNSEEKGIFLDIA-CF-FKGEDVDLLTRIQDN-PTSMCHRLK 467 (505)
Q Consensus 399 --------~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la-~f-~~~~~~~~l~~l~~~-~~~~~~~l~ 467 (505)
+.......+..+ ......+++.++..+..+. .+ +..+....+...++. .......++
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~ 286 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAAL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHE 286 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTH
T ss_pred HHhcCCCCCHHHHHHHHHHh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHh
Confidence 222222222211 1123456676777776554 33 344678888877765 333444454
Q ss_pred H-HhhccceEEcCCCc
Q 042739 468 I-LVGKSLIAISDRKR 482 (505)
Q Consensus 468 ~-L~~~sLl~~~~~~~ 482 (505)
. +++.++|...+.|+
T Consensus 287 ~~~i~~~li~~~~~g~ 302 (324)
T 1hqc_A 287 PYLIRQGLLKRTPRGR 302 (324)
T ss_dssp HHHHHTTSEEEETTEE
T ss_pred HHHHHhcchhcCCccc
Confidence 4 88999998775554
No 25
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.19 E-value=2.9e-10 Score=110.23 Aligned_cols=190 Identities=18% Similarity=0.155 Sum_probs=115.9
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccc-cceEEEeecccccccccHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYF-QGNCFMANVREESNKLGVIRVRDE 263 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~ 263 (505)
.....++|++..++.|..++..+. .+.+.|+|++|+|||++|+.+++.+.... ...+...+. ....+ ......
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~---~~~~~-~~~~~~ 95 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA---SDERG-INVIRE 95 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET---TCHHH-HHTTHH
T ss_pred CCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec---cccCc-hHHHHH
Confidence 445679999999999999997542 33489999999999999999998864322 111111111 11101 111111
Q ss_pred HHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcchhh-cc-cCCCc
Q 042739 264 VISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDKRVL-DK-CEVSN 340 (505)
Q Consensus 264 ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~-~~-~~~~~ 340 (505)
.+....... ....+++.++|+|+++ -.......+...+.....++++|+|+...... .. .....
T Consensus 96 ~~~~~~~~~-------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 96 KVKEFARTK-------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp HHHHHHHSC-------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred HHHHHHhhC-------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 111111000 0112467899999995 23445555655554445677888888664321 11 11234
Q ss_pred EEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhh
Q 042739 341 IFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSL 395 (505)
Q Consensus 341 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 395 (505)
.+.+.+++.++..+++...+...+. ....+....+++.++|+|..+..+...+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 7899999999999999887633221 2335677889999999999765554433
No 26
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.11 E-value=2e-09 Score=103.81 Aligned_cols=185 Identities=14% Similarity=0.119 Sum_probs=115.1
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhc-ccccceEEEeecccccccccHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQIS-RYFQGNCFMANVREESNKLGVIRVRDE 263 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~ 263 (505)
.....++|++..++.|.+++..+ ..+.+.|+|++|+|||++|+.+++.+. ..+...+...+.........+...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--- 88 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHK--- 88 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHH---
T ss_pred CCHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHH---
Confidence 34456999999999999998753 233389999999999999999998863 222211111111110000000000
Q ss_pred HHHHHhCCCCccCCCCchHHHHhc--c-CCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcchh-hcc-cC
Q 042739 264 VISQVLGENLKVGTLTIPQNIKKG--L-QRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDKRV-LDK-CE 337 (505)
Q Consensus 264 ll~~~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~-~~~-~~ 337 (505)
...+... + .+++.++|+|+++ -.......+...+.....++.+|+||..... ... ..
T Consensus 89 -----------------~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 89 -----------------IKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp -----------------HHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred -----------------HHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 1111101 1 2567899999995 2345556677666655567788888765431 111 12
Q ss_pred CCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHH
Q 042739 338 VSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGS 393 (505)
Q Consensus 338 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 393 (505)
....+.+.+++.++..+++...+...+. ....+.+..+++.++|++..+.....
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGV--KITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCC--CBCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3458999999999999999887643222 12356678899999999987655443
No 27
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.11 E-value=2.8e-09 Score=103.91 Aligned_cols=257 Identities=12% Similarity=0.152 Sum_probs=149.0
Q ss_pred CCCCCceechhhHHHHHHhhhcc---CCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLE---SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVR 261 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 261 (505)
.....|+|++..++.+..++... ....+.+.|+|++|+|||+||+.+++.....|. ..+...... . ..+
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~----~~~~~~~~~---~-~~~ 97 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIK----TTAAPMIEK---S-GDL 97 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE----EEEGGGCCS---H-HHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE----Eecchhccc---h-hHH
Confidence 34467999999999999988742 233557899999999999999999888644321 111111111 0 001
Q ss_pred HHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCC------------------CCCCE
Q 042739 262 DEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRF------------------SPGSR 322 (505)
Q Consensus 262 ~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~------------------~~~~~ 322 (505)
... +.. ..++.+|+||+++ -.......+...+... .++..
T Consensus 98 ~~~-------------------~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 98 AAI-------------------LTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp HHH-------------------HHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred HHH-------------------HHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 111 111 2346799999995 2333333333322111 11355
Q ss_pred EEEEeCcchhhc-c-c-CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhc---
Q 042739 323 IIITTRDKRVLD-K-C-EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSLY--- 396 (505)
Q Consensus 323 iliTsR~~~~~~-~-~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~--- 396 (505)
+|.+|....... . . .....+.+++++.++..+++...+.... .....+....+++.+.|+|..+..+...+.
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKRVRDFA 234 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 666665432111 1 1 1236799999999999999987763221 123356678888999999977765554321
Q ss_pred ---C---CCHHHHHHHHHhhccCCCccHHHHHHHhHhcCChhHHHHHhhhhccC-CCCCHHHHHHHHhC-CCchhhHHH-
Q 042739 397 ---Q---NSIQQWEDKLHNLNLISEPNIYKVLKISYDELNSEEKGIFLDIACFF-KGEDVDLLTRIQDN-PTSMCHRLK- 467 (505)
Q Consensus 397 ---~---~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~-~~~~~~~l~~l~~~-~~~~~~~l~- 467 (505)
+ .+.......+.. +......++...+.++..++-.. ...+...+...++. .......++
T Consensus 235 ~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~ 302 (338)
T 3pfi_A 235 DVNDEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEP 302 (338)
T ss_dssp HHTTCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHH
T ss_pred HhhcCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhH
Confidence 0 112222222211 11122345555566666665542 33567777777765 444555566
Q ss_pred HHhhccceEEcCCCcEE
Q 042739 468 ILVGKSLIAISDRKRLQ 484 (505)
Q Consensus 468 ~L~~~sLl~~~~~~~~~ 484 (505)
.|++.|+|.....|+..
T Consensus 303 ~l~~~gli~~~~~g~~~ 319 (338)
T 3pfi_A 303 YLLANGYIERTAKGRIA 319 (338)
T ss_dssp HHHHTTSEEEETTEEEE
T ss_pred HHHHcCceecCCCcccc
Confidence 89999999987666553
No 28
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.08 E-value=1.6e-09 Score=107.00 Aligned_cols=197 Identities=12% Similarity=0.074 Sum_probs=116.6
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEV 264 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 264 (505)
.....++||+..++.|...+..+. ..+.+.|+|++|+|||++|+.+++.+....... ...+ ... .....+
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~--~~~~---~~~----~~~~~~ 82 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT--ATPC---GVC----DNCREI 82 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC--SSCC---SSS----HHHHHH
T ss_pred CchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC--CCCC---ccc----HHHHHH
Confidence 344569999999999999997532 245788999999999999999998764322100 0000 000 000011
Q ss_pred HHHHhCCC-----CccCCCCchHHHHhcc-----CCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcchh-
Q 042739 265 ISQVLGEN-----LKVGTLTIPQNIKKGL-----QRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDKRV- 332 (505)
Q Consensus 265 l~~~~~~~-----~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~- 332 (505)
........ ......+....+.+.+ .+++.++||||++ -+......+...+.....+..+|++|.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 00000000 0001112233333332 2457899999995 2445556666555544556677777764421
Q ss_pred hcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHH
Q 042739 333 LDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGS 393 (505)
Q Consensus 333 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 393 (505)
... ......+++.+++.++..+++...+...+. ....+.+..+++.++|+|..+..+..
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~--~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 111 123468999999999999999876622111 12245678899999999998876654
No 29
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.91 E-value=2.3e-08 Score=95.14 Aligned_cols=166 Identities=11% Similarity=0.045 Sum_probs=96.9
Q ss_pred ceechhhHHHHHHhhhc--cCCCceEEEEeccCcchHHHHHHHHHhhhcccc-----c--ceEEEeecccccccccHHHH
Q 042739 190 FIGINSRIEEIKSLLCL--ESHDARIVGIWGMGGIGKTTIASVVFHQISRYF-----Q--GNCFMANVREESNKLGVIRV 260 (505)
Q Consensus 190 fvGR~~el~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~--~~~~~~~~~~~~~~~~~~~~ 260 (505)
+.||++|++.|...|.. ..+..+.+.|+|++|+|||++++.+++.+.... + ..+.+. + ....+...+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN-c---~~~~t~~~~ 97 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID-A---LELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE-T---TCCC--HHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe-c---cccCCHHHH
Confidence 78999999999988864 234577889999999999999999999875321 1 123333 1 222334455
Q ss_pred HHHHHHHHhCCCCccCCC-CchHHHHhcc---CCCeEEEEEeCCC--CCHHHHHHHhcCcCCCCCCCEEEEEeCcchh--
Q 042739 261 RDEVISQVLGENLKVGTL-TIPQNIKKGL---QRMKVLIVLDDVH--DEFTQLESLAGVIDRFSPGSRIIITTRDKRV-- 332 (505)
Q Consensus 261 ~~~ll~~~~~~~~~~~~~-~~~~~l~~~l---~~~~~LlVlDdv~--~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~-- 332 (505)
+..+..++.+........ .....+...+ .+++++++||+++ ...+.+..+............||.++.....
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 666677765543211111 1122232322 4568999999994 1233343333211111222334444433211
Q ss_pred --h-----cccCCCcEEEcCCCCHhHHHHHHHHhh
Q 042739 333 --L-----DKCEVSNIFEVKGLEHNKAFELFCRKA 360 (505)
Q Consensus 333 --~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~ 360 (505)
+ +.+ ....+.+++++.+|..+++..++
T Consensus 178 ~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 178 EQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHH
Confidence 1 111 12569999999999999998877
No 30
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.90 E-value=5.6e-08 Score=95.11 Aligned_cols=197 Identities=14% Similarity=0.153 Sum_probs=112.7
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc--ccceEEEeecccccccccHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY--FQGNCFMANVREESNKLGVIRVRD 262 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~~ 262 (505)
.....++|++..++.|..++..+. .+.+.|+|++|+|||+||+.++..+... +...+...+. ....+. ..+.
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~---~~~~~~-~~~~ 107 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA---SDERGI-SIVR 107 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS---SSCCCH-HHHT
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc---ccccch-HHHH
Confidence 445679999999999999997432 2238899999999999999999876421 2222221111 111111 1122
Q ss_pred HHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcch-hhcc-cCCC
Q 042739 263 EVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDKR-VLDK-CEVS 339 (505)
Q Consensus 263 ~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~~-~~~~-~~~~ 339 (505)
+.+........ ... ........-..++-+|++|+++ -.......+...+.......++|+++.... +... ....
T Consensus 108 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 108 EKVKNFARLTV--SKP-SKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp THHHHHHHSCC--CCC-CTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHHHhhhcc--ccc-chhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 22222111100 000 0000111112456799999995 233344455544443345667777765432 1111 1123
Q ss_pred cEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHH
Q 042739 340 NIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLG 392 (505)
Q Consensus 340 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 392 (505)
..+.+.+++.++..+.+...+..... ....+..+.|++.++|+|..+..+.
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENV--KCDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 47899999999999999887633221 1235678899999999998755443
No 31
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.89 E-value=7.8e-09 Score=95.26 Aligned_cols=178 Identities=11% Similarity=0.147 Sum_probs=102.6
Q ss_pred CCCCCceech---hhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHH
Q 042739 185 TDLDGFIGIN---SRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVR 261 (505)
Q Consensus 185 ~~~~~fvGR~---~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 261 (505)
...+.|+|+. ..++.+..+... +..+.+.|+|++|+|||+||+.+++..........++. ........
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~~------ 95 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG--DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASIS------ 95 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT--CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGSC------
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHHH------
Confidence 3446788743 556666666643 24578899999999999999999988655433344443 21111100
Q ss_pred HHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCC---CHHHHHHHhcCcCCC-CCC-CEEEEEeCcchh-h--
Q 042739 262 DEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHD---EFTQLESLAGVIDRF-SPG-SRIIITTRDKRV-L-- 333 (505)
Q Consensus 262 ~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~---~~~~~~~l~~~l~~~-~~~-~~iliTsR~~~~-~-- 333 (505)
.. ....+ .++.+|||||++. .......+...+... ..+ .++|+||+.... .
T Consensus 96 -------------------~~-~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 96 -------------------TA-LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -------------------GG-GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -------------------HH-HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 00 00111 3456999999951 111123332222111 122 247887764321 1
Q ss_pred ------cccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHh
Q 042739 334 ------DKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSS 394 (505)
Q Consensus 334 ------~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 394 (505)
..+.....+++++++.++..+++...+..... ....+..+.+++.++|++..+..+...
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l~~ 219 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDVLDR 219 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 11111267999999999999999887632211 123466788999999999887665543
No 32
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.86 E-value=9.9e-09 Score=90.83 Aligned_cols=50 Identities=26% Similarity=0.306 Sum_probs=42.0
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.....|+||+.+++.+.+.+.. ...+.+.|+|++|+|||+||+.+++.+.
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3446799999999999999864 3356788999999999999999998764
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.83 E-value=3.4e-08 Score=97.36 Aligned_cols=204 Identities=13% Similarity=0.086 Sum_probs=108.7
Q ss_pred CCCceechhhHHHHHH---hhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHH
Q 042739 187 LDGFIGINSRIEEIKS---LLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDE 263 (505)
Q Consensus 187 ~~~fvGR~~el~~l~~---~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 263 (505)
.+.|+|++...+.+.. .+..+....+.+.|+|++|+|||+||+.+++.+....+. +.+....-............+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF-TAIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE-EEEEGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc-ccccchhhhhcccchhHHHHH
Confidence 5679999999777544 444333334689999999999999999999987643221 111111111111222222333
Q ss_pred HHHHHhCC---------------------CC---cc--C-CCCchHHHHhcc---------CCC----eEEEEEeCCC-C
Q 042739 264 VISQVLGE---------------------NL---KV--G-TLTIPQNIKKGL---------QRM----KVLIVLDDVH-D 302 (505)
Q Consensus 264 ll~~~~~~---------------------~~---~~--~-~~~~~~~l~~~l---------~~~----~~LlVlDdv~-~ 302 (505)
.+....+. .. .. . .......+++.+ .++ +.+|+||+++ -
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 32221110 00 00 0 000011111111 122 4699999995 2
Q ss_pred CHHHHHHHhcCcCCCCCCCEEEEEeCc-c------------hhh-cccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCCh
Q 042739 303 EFTQLESLAGVIDRFSPGSRIIITTRD-K------------RVL-DKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSH 368 (505)
Q Consensus 303 ~~~~~~~l~~~l~~~~~~~~iliTsR~-~------------~~~-~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~ 368 (505)
..+....+...+...... .+++++.. . .+. ........+.+++++.++..+++...+..... .
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~--~ 278 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV--E 278 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC--C
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC--C
Confidence 344455555544433333 34444431 1 000 01122345899999999999999877632221 2
Q ss_pred hHHHHHHHHHHHhc-CChHHHHHHHHh
Q 042739 369 DLYQLSQRVVCYAD-GNPLALEVLGSS 394 (505)
Q Consensus 369 ~~~~~~~~i~~~~~-G~PLal~~~~~~ 394 (505)
...+....+++.+. |+|..+..+...
T Consensus 279 ~~~~~l~~l~~~~~~G~~r~~~~ll~~ 305 (368)
T 3uk6_A 279 MSEDAYTVLTRIGLETSLRYAIQLITA 305 (368)
T ss_dssp BCHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 33567788999998 998877665543
No 34
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.81 E-value=6e-08 Score=99.84 Aligned_cols=193 Identities=16% Similarity=0.145 Sum_probs=105.3
Q ss_pred CCCCCceechhhHHHHHHhhhccC---------------CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLES---------------HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVR 249 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~---------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 249 (505)
.....++|++..++.|.+++.... +..+.+.|+|++|+|||+||+.+++.+.. + .+.+. ..
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~--~-~i~in-~s 111 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY--D-ILEQN-AS 111 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC--E-EEEEC-TT
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC--C-EEEEe-CC
Confidence 344669999999999999986410 13478999999999999999999998731 1 12222 11
Q ss_pred cccccccHHHHHHHHHHHHhCCCCccCCCCchHHH--HhccCCCeEEEEEeCCC----CCHHHHHHHhcCcCCCCCCCEE
Q 042739 250 EESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNI--KKGLQRMKVLIVLDDVH----DEFTQLESLAGVIDRFSPGSRI 323 (505)
Q Consensus 250 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l--~~~l~~~~~LlVlDdv~----~~~~~~~~l~~~l~~~~~~~~i 323 (505)
.... .......+....... ... ...... .....+++.+|+||+++ .....+..+...+. ..+..|
T Consensus 112 ~~~~----~~~~~~~i~~~~~~~-~~~--~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~i 182 (516)
T 1sxj_A 112 DVRS----KTLLNAGVKNALDNM-SVV--GYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPL 182 (516)
T ss_dssp SCCC----HHHHHHTGGGGTTBC-CST--TTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCE
T ss_pred Ccch----HHHHHHHHHHHhccc-cHH--HHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCE
Confidence 1111 111122111111100 000 000000 00123568899999994 11212233333222 123445
Q ss_pred EEEeCcch---hhcccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHH
Q 042739 324 IITTRDKR---VLDKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLG 392 (505)
Q Consensus 324 liTsR~~~---~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 392 (505)
|+++.... +.........+.+++++.++..+++...+...... ...+....|++.++|.+..+..+.
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~--i~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK--LDPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHTTTCHHHHHHHH
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 55554321 12222334579999999999999987765321111 112457788999999766544433
No 35
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.79 E-value=2.2e-08 Score=100.74 Aligned_cols=187 Identities=10% Similarity=0.127 Sum_probs=106.8
Q ss_pred CCCCce-echhhH--HHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccce--EEEeecccccccccHHHH
Q 042739 186 DLDGFI-GINSRI--EEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGN--CFMANVREESNKLGVIRV 260 (505)
Q Consensus 186 ~~~~fv-GR~~el--~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~--~~~~~~~~~~~~~~~~~~ 260 (505)
..+.|+ |....+ ..+........ ....+.|+|++|+|||+||+.+++.+...++.. +++. . ..+
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~-~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-~---------~~~ 171 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPG-RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S---------EKF 171 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTT-SSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-H---------HHH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-H---------HHH
Confidence 345576 655443 23333333222 267899999999999999999999876554322 2222 1 112
Q ss_pred HHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC---CCHHHHHHHhcCcCC-CCCCCEEEEEeCcchh----
Q 042739 261 RDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH---DEFTQLESLAGVIDR-FSPGSRIIITTRDKRV---- 332 (505)
Q Consensus 261 ~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~---~~~~~~~~l~~~l~~-~~~~~~iliTsR~~~~---- 332 (505)
..++...+... ....+...+..++.+|+||+++ ......+.+...+.. ...+..||+||.+...
T Consensus 172 ~~~~~~~~~~~--------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~ 243 (440)
T 2z4s_A 172 LNDLVDSMKEG--------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_dssp HHHHHHHHHTT--------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS
T ss_pred HHHHHHHHHcc--------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH
Confidence 22333332211 1223444444367799999995 111233333332211 1356788888876321
Q ss_pred -----hcccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHH
Q 042739 333 -----LDKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGS 393 (505)
Q Consensus 333 -----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 393 (505)
...+.....+.+++++.++..+++...+...... ...+....|++.++|++.-+.-+..
T Consensus 244 l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~--i~~e~l~~la~~~~gn~R~l~~~L~ 307 (440)
T 2z4s_A 244 FQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLRGAII 307 (440)
T ss_dssp CCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHCCSCHHHHHHHHH
T ss_pred HHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 1122223568999999999999998776311111 1124567888999999987765443
No 36
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.79 E-value=2.5e-07 Score=90.53 Aligned_cols=201 Identities=13% Similarity=0.145 Sum_probs=112.8
Q ss_pred HHHHHHHHHhhccccccCCCCCCCCCceechhhHHHHHHhhhc----------cCCCceEEEEeccCcchHHHHHHHHHh
Q 042739 164 AELVEEIVADISKKLEDMSDSTDLDGFIGINSRIEEIKSLLCL----------ESHDARIVGIWGMGGIGKTTIASVVFH 233 (505)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~~~~~~~fvGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~ 233 (505)
...++.+...+....+ + .....++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.++.
T Consensus 64 ~~~~~~i~~~i~~~~~---~-~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 64 PKMIELIMNEIMDHGP---P-VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp HHHHHHHHHHTBCCSC---C-CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred hHHHHHHHhhcccCCC---C-CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455556555554332 2 4446799999999999987752 123356889999999999999999998
Q ss_pred hhcccccceEEEeeccccccc-cc-HHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCCH-------
Q 042739 234 QISRYFQGNCFMANVREESNK-LG-VIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDEF------- 304 (505)
Q Consensus 234 ~~~~~f~~~~~~~~~~~~~~~-~~-~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------- 304 (505)
.....| +..+....... .+ .......+ +......++.+|+||+++ ..
T Consensus 140 ~~~~~~----~~i~~~~l~~~~~g~~~~~~~~~-------------------~~~a~~~~~~vl~iDEid-~l~~~~~~~ 195 (357)
T 3d8b_A 140 QSGATF----FSISASSLTSKWVGEGEKMVRAL-------------------FAVARCQQPAVIFIDEID-SLLSQRGDG 195 (357)
T ss_dssp HTTCEE----EEEEGGGGCCSSTTHHHHHHHHH-------------------HHHHHHTCSEEEEEETHH-HHTBC----
T ss_pred HcCCeE----EEEehHHhhccccchHHHHHHHH-------------------HHHHHhcCCeEEEEeCch-hhhccCCCC
Confidence 764322 22222111110 00 01111111 111112457899999992 21
Q ss_pred ------HHHHHHhcCcC----CCCCCCEEEEEeCcchhhc-c--cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHH
Q 042739 305 ------TQLESLAGVID----RFSPGSRIIITTRDKRVLD-K--CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLY 371 (505)
Q Consensus 305 ------~~~~~l~~~l~----~~~~~~~iliTsR~~~~~~-~--~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~ 371 (505)
.....++..+. ....+..||.||.....+. . ......+.++..+.++..+++...+...... ...
T Consensus 196 ~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~ 273 (357)
T 3d8b_A 196 EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LSE 273 (357)
T ss_dssp --CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCH
T ss_pred cchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccH
Confidence 11222322221 1123445555665432111 1 1223468899999999999988776322211 123
Q ss_pred HHHHHHHHHhcC-ChHHHHHHHHh
Q 042739 372 QLSQRVVCYADG-NPLALEVLGSS 394 (505)
Q Consensus 372 ~~~~~i~~~~~G-~PLal~~~~~~ 394 (505)
+....|++.+.| .+-.|..++..
T Consensus 274 ~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 274 EEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHH
Confidence 567788899988 56677776654
No 37
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.75 E-value=8.3e-08 Score=93.99 Aligned_cols=200 Identities=12% Similarity=0.089 Sum_probs=109.0
Q ss_pred CCCCCceechhhHHHHHHhh-hccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEee----------------
Q 042739 185 TDLDGFIGINSRIEEIKSLL-CLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMAN---------------- 247 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~---------------- 247 (505)
.....++|.+..++.|.+++ ..+. ... +.|+|++|+|||||++.++..+.......+.+..
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 34466899999999999988 5332 234 8999999999999999999864222111111100
Q ss_pred -------cccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCC
Q 042739 248 -------VREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSP 319 (505)
Q Consensus 248 -------~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~ 319 (505)
+.............++.+..+..... .... . .+ ..+.+++-++|||+++ -+......+...+.....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~--~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~ 163 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ-VDFQ--D-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSK 163 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC-----------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhcc-cccc--c-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcC
Confidence 00000000000012222222211100 0000 0 00 0023467799999995 233334445544443345
Q ss_pred CCEEEEEeCcch-hhcc-cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhH-HHHHHHHHHHhcCChHHHHHHHH
Q 042739 320 GSRIIITTRDKR-VLDK-CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDL-YQLSQRVVCYADGNPLALEVLGS 393 (505)
Q Consensus 320 ~~~iliTsR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~-~~~~~~i~~~~~G~PLal~~~~~ 393 (505)
+..+|++|.+.. +... ......+++.+++.++..+.+...+...+. ... ++.+..|++.++|++..+..+..
T Consensus 164 ~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 164 NIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI--QLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--EECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 677887776542 2111 123467999999999999999877622111 112 35677899999999987765543
No 38
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.75 E-value=2.3e-07 Score=93.15 Aligned_cols=181 Identities=14% Similarity=0.181 Sum_probs=106.7
Q ss_pred CCCCCceechhhH---HHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHH
Q 042739 185 TDLDGFIGINSRI---EEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVR 261 (505)
Q Consensus 185 ~~~~~fvGR~~el---~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 261 (505)
...+.++|.+..+ ..|...+..+. .+.+.|+|++|+|||+||+.+++.....|.. +. . .. .+.. .+
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~-a--~~--~~~~-~i 91 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANADVER---IS-A--VT--SGVK-EI 91 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EE-T--TT--CCHH-HH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EE-e--cc--CCHH-HH
Confidence 4456799999988 78888886533 4678999999999999999999987544321 11 1 11 1111 11
Q ss_pred HHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCC-CHHHHHHHhcCcCCCCCCCEEEEEe-Ccch--hh-ccc
Q 042739 262 DEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHD-EFTQLESLAGVIDRFSPGSRIIITT-RDKR--VL-DKC 336 (505)
Q Consensus 262 ~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~l~~~~~~~~iliTs-R~~~--~~-~~~ 336 (505)
..++.... .....+++.+|+||+++. .......|+..+.. ....+|.+| .+.. +. ...
T Consensus 92 r~~~~~a~---------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 92 REAIERAR---------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALL 154 (447)
T ss_dssp HHHHHHHH---------------HHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHH
T ss_pred HHHHHHHH---------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHh
Confidence 22221110 011135678999999952 22334444444432 234455444 3331 11 111
Q ss_pred CCCcEEEcCCCCHhHHHHHHHHhhcCCC-----CCChhHHHHHHHHHHHhcCChHHHHHHHH
Q 042739 337 EVSNIFEVKGLEHNKAFELFCRKAFGQN-----NRSHDLYQLSQRVVCYADGNPLALEVLGS 393 (505)
Q Consensus 337 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 393 (505)
.....+.+.+++.++..+++...+.... .......+..+.|++.++|++..+..+..
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le 216 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 2345789999999999999988763311 11223456788899999999887655443
No 39
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.74 E-value=1.4e-07 Score=89.41 Aligned_cols=182 Identities=18% Similarity=0.236 Sum_probs=103.7
Q ss_pred CCCCCceechhhHHHHHHhhhcc-----------CCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLE-----------SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESN 253 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 253 (505)
.....++|.+..+++|.+.+... ....+.+.|+|++|+|||+||+.++......|- .........
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~----~v~~~~~~~ 89 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFI----RVVGSELVK 89 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE----EEEGGGGCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEehHHHHH
Confidence 44567999999999999887531 134567899999999999999999988644321 111111111
Q ss_pred c-c-cHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCCH----------------HHHHHHhcCcC
Q 042739 254 K-L-GVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDEF----------------TQLESLAGVID 315 (505)
Q Consensus 254 ~-~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~~l~~~l~ 315 (505)
. . ........ .+.......+.+|+||++ +.. ..+..+...+.
T Consensus 90 ~~~~~~~~~~~~-------------------~~~~~~~~~~~vl~iDEi-d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 149 (285)
T 3h4m_A 90 KFIGEGASLVKD-------------------IFKLAKEKAPSIIFIDEI-DAIAAKRTDALTGGDREVQRTLMQLLAEMD 149 (285)
T ss_dssp CSTTHHHHHHHH-------------------HHHHHHHTCSEEEEEETT-HHHHBCCSSSCCGGGGHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHH-------------------HHHHHHHcCCeEEEEECH-HHhcccCccccCCccHHHHHHHHHHHHHhh
Confidence 0 0 01111111 111222345789999999 321 12222222221
Q ss_pred --CCCCCCEEEEEeCcchhhc-----ccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcC-ChHH
Q 042739 316 --RFSPGSRIIITTRDKRVLD-----KCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADG-NPLA 387 (505)
Q Consensus 316 --~~~~~~~iliTsR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLa 387 (505)
....+..||.||....... .......+.+++++.++..+++........... ......++..+.| .|-.
T Consensus 150 ~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~l~~~~~g~~~~~ 226 (285)
T 3h4m_A 150 GFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE---DVNLEEIAKMTEGCVGAE 226 (285)
T ss_dssp TTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT---TCCHHHHHHHCTTCCHHH
T ss_pred CCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC---cCCHHHHHHHcCCCCHHH
Confidence 1123566777776543221 112234789999999999999988774322211 1124567777777 4556
Q ss_pred HHHHHH
Q 042739 388 LEVLGS 393 (505)
Q Consensus 388 l~~~~~ 393 (505)
|..+..
T Consensus 227 i~~l~~ 232 (285)
T 3h4m_A 227 LKAICT 232 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 40
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.70 E-value=4.7e-07 Score=85.10 Aligned_cols=170 Identities=15% Similarity=0.114 Sum_probs=90.8
Q ss_pred CCceechhhHHHHHHh-------hhc-cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHH
Q 042739 188 DGFIGINSRIEEIKSL-------LCL-ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIR 259 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~-------L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 259 (505)
..++|....++.+... +.. .....+.+.|+|++|+|||+||+.+++.....| +.+....... ......
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~~-g~~~~~ 108 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKMI-GFSETA 108 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGCT-TCCHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHhc-CCchHH
Confidence 4578888877766652 221 134567899999999999999999998753321 1121110000 000000
Q ss_pred HHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCC-----------CHHHHHHHhcCcCC---CCCCCEEEE
Q 042739 260 VRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHD-----------EFTQLESLAGVIDR---FSPGSRIII 325 (505)
Q Consensus 260 ~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-----------~~~~~~~l~~~l~~---~~~~~~ili 325 (505)
... .+ ...+......++.+|+||+++. ....+..+...+.. ......||.
T Consensus 109 ~~~-~~---------------~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ 172 (272)
T 1d2n_A 109 KCQ-AM---------------KKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIG 172 (272)
T ss_dssp HHH-HH---------------HHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEE
T ss_pred HHH-HH---------------HHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEE
Confidence 000 00 1112222235688999999821 12233334333322 223344666
Q ss_pred EeCcchhhcc---c-CCCcEEEcCCCCH-hHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCC
Q 042739 326 TTRDKRVLDK---C-EVSNIFEVKGLEH-NKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGN 384 (505)
Q Consensus 326 TsR~~~~~~~---~-~~~~~~~l~~L~~-~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 384 (505)
||.....+.. . .....+.+++++. ++..+++.... . ...+....+++.+.|.
T Consensus 173 ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~---~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 173 TTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N---FKDKERTTIAQQVKGK 229 (272)
T ss_dssp EESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C---SCHHHHHHHHHHHTTS
T ss_pred ecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C---CCHHHHHHHHHHhcCC
Confidence 7765533222 1 1245789999988 66666665432 1 1234567788888883
No 41
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.66 E-value=1.9e-07 Score=90.23 Aligned_cols=185 Identities=15% Similarity=0.127 Sum_probs=100.5
Q ss_pred CCCCCce-echhh--HHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHH
Q 042739 185 TDLDGFI-GINSR--IEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVR 261 (505)
Q Consensus 185 ~~~~~fv-GR~~e--l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 261 (505)
...+.|+ |.... ...+..+..........+.|+|++|+|||+||+.+++.+.......+++. . ..+.
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~---------~~~~ 77 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-A---------DDFA 77 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-H---------HHHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-H---------HHHH
Confidence 3445676 54433 33444444433223567899999999999999999988644312223332 1 1112
Q ss_pred HHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCC--C-HHHHHHHhcCcCC-CCCCCEEEEEeCcchh-----
Q 042739 262 DEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHD--E-FTQLESLAGVIDR-FSPGSRIIITTRDKRV----- 332 (505)
Q Consensus 262 ~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~-~~~~~~l~~~l~~-~~~~~~iliTsR~~~~----- 332 (505)
..+...+.. .....+...+. ++.+|+||+++. . ....+.+...+.. ...+..+|+|+.....
T Consensus 78 ~~~~~~~~~--------~~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l 148 (324)
T 1l8q_A 78 QAMVEHLKK--------GTINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGV 148 (324)
T ss_dssp HHHHHHHHH--------TCHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTS
T ss_pred HHHHHHHHc--------CcHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHh
Confidence 222222211 01122222222 366999999951 1 1222333222211 1345678888764321
Q ss_pred ----hcccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHH
Q 042739 333 ----LDKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLG 392 (505)
Q Consensus 333 ----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 392 (505)
...+.....+++++ +.++..+++...+..... ....+....|++.+ |+.-.+..+.
T Consensus 149 ~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~--~l~~~~l~~l~~~~-g~~r~l~~~l 208 (324)
T 1l8q_A 149 SDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL--ELRKEVIDYLLENT-KNVREIEGKI 208 (324)
T ss_dssp CHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHC-SSHHHHHHHH
T ss_pred hhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhC-CCHHHHHHHH
Confidence 11122235689999 999999999887632221 12246678889999 8877554433
No 42
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.66 E-value=2e-06 Score=83.24 Aligned_cols=265 Identities=16% Similarity=0.161 Sum_probs=137.0
Q ss_pred CCCCceechhhHHHHHHhhhcc---CCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHH
Q 042739 186 DLDGFIGINSRIEEIKSLLCLE---SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRD 262 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 262 (505)
....++|.+..++.+...+..+ ......++|+|++|+||||||+.++..+...+. ..... .. ..... +.
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~----~~sg~-~~--~~~~~-l~ 94 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----VTSGP-VL--VKQGD-MA 94 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----EEETT-TC--CSHHH-HH
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEech-Hh--cCHHH-HH
Confidence 3456889988888888777532 223467899999999999999999988643321 11000 00 00000 01
Q ss_pred HHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCC-CHHHHHHHhcCcCCCC------------------CCCEE
Q 042739 263 EVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHD-EFTQLESLAGVIDRFS------------------PGSRI 323 (505)
Q Consensus 263 ~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~l~~~l~~~~------------------~~~~i 323 (505)
.+ ...+ .++.++++|+++. .....+.+...+.... +...+
T Consensus 95 ~~--------------------~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 95 AI--------------------LTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp HH--------------------HHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred HH--------------------HHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 11 1111 1234778898842 2222233321111000 11223
Q ss_pred EE-EeCcchhhccc--CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHHHHhhcCCCH
Q 042739 324 II-TTRDKRVLDKC--EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVLGSSLYQNSI 400 (505)
Q Consensus 324 li-TsR~~~~~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~ 400 (505)
+. |++...+.... .......+++.+.++..+++.+.+.... .....+.+..|++.+.|.|..+..+...+..
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~--- 228 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAIRLTKRVRD--- 228 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHHHHHHHHHH---
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHHHHHHHHHH---
Confidence 33 33322221111 1123588999999999999987762211 1233566889999999999866554433210
Q ss_pred HHHHHHHHhhccCCCccHHHHHHH---hHhcCChhHHHHHhhhhc-c-CCCCCHHHHHHHHhC-CCchhhHHH-HHhhcc
Q 042739 401 QQWEDKLHNLNLISEPNIYKVLKI---SYDELNSEEKGIFLDIAC-F-FKGEDVDLLTRIQDN-PTSMCHRLK-ILVGKS 473 (505)
Q Consensus 401 ~~~~~~l~~l~~~~~~~l~~~l~~---s~~~L~~~~~~~l~~la~-f-~~~~~~~~l~~l~~~-~~~~~~~l~-~L~~~s 473 (505)
+.. ...-.....+.+..++.. .-..++...+..+..++- | ..+...+.+....+. ....++..+ .|...|
T Consensus 229 --~a~-~~~~~~It~~~v~~al~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l~~~g 305 (334)
T 1in4_A 229 --MLT-VVKADRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAG 305 (334)
T ss_dssp --HHH-HHTCSSBCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHTT
T ss_pred --HHH-HcCCCCcCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence 000 000000111112222221 112455555566554443 3 234666777766654 222223333 889999
Q ss_pred ceEEcCCCcEEecH
Q 042739 474 LIAISDRKRLQMHD 487 (505)
Q Consensus 474 Ll~~~~~~~~~~H~ 487 (505)
+|+....|++....
T Consensus 306 ~i~~~~~gr~~~~~ 319 (334)
T 1in4_A 306 FLARTPRGRIVTEK 319 (334)
T ss_dssp SEEEETTEEEECHH
T ss_pred CeecccccHHhhHH
Confidence 99998788765443
No 43
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.66 E-value=4.2e-07 Score=87.65 Aligned_cols=185 Identities=13% Similarity=0.095 Sum_probs=105.5
Q ss_pred CCCCCceechhhHHHHHHhhh----------ccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccc-
Q 042739 185 TDLDGFIGINSRIEEIKSLLC----------LESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESN- 253 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~- 253 (505)
.....++|.+..++.|.+.+. ......+.+.|+|++|+|||+||+.++......| +..+......
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~~~ 90 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLVSK 90 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEEHHHHHTT
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEchHHHhhc
Confidence 444668999999999988772 1112246789999999999999999998864332 1221111000
Q ss_pred -cccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCCH-------------HHHHHHhcCcC---C
Q 042739 254 -KLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDEF-------------TQLESLAGVID---R 316 (505)
Q Consensus 254 -~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~~l~~~l~---~ 316 (505)
......... ..+......++.+|+||+++ .. .....++..+. .
T Consensus 91 ~~g~~~~~~~-------------------~~f~~a~~~~~~vl~iDEid-~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 150 (322)
T 3eie_A 91 WMGESEKLVK-------------------QLFAMARENKPSIIFIDQVD-ALTGTRGEGESEASRRIKTELLVQMNGVGN 150 (322)
T ss_dssp TGGGHHHHHH-------------------HHHHHHHHTSSEEEEEECGG-GGSCC------CCTHHHHHHHHHHHGGGGT
T ss_pred ccchHHHHHH-------------------HHHHHHHhcCCeEEEechhh-hhhccCCCCcchHHHHHHHHHHHHhccccc
Confidence 000011111 11111223467899999994 21 11233332222 2
Q ss_pred CCCCCEEEEEeCcchhhcc---cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcC-ChHHHHHHH
Q 042739 317 FSPGSRIIITTRDKRVLDK---CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADG-NPLALEVLG 392 (505)
Q Consensus 317 ~~~~~~iliTsR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~~ 392 (505)
...+..||.||.....+.. -.....+.++..+.++-.+++...+...... ........|++.+.| .+-.|..++
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 151 DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV--LTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp SCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC--CCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred cCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2345556656655322110 0234568899999999999998877432211 123456788888887 455666665
Q ss_pred Hhh
Q 042739 393 SSL 395 (505)
Q Consensus 393 ~~l 395 (505)
...
T Consensus 229 ~~a 231 (322)
T 3eie_A 229 KDA 231 (322)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 44
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.63 E-value=1.3e-06 Score=81.54 Aligned_cols=184 Identities=15% Similarity=0.154 Sum_probs=100.2
Q ss_pred CCCCceechhhHHHHHHhhhc---c-------CCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccc
Q 042739 186 DLDGFIGINSRIEEIKSLLCL---E-------SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKL 255 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~~---~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 255 (505)
....++|.+...+.|.+++.. . ....+.+.|+|++|+|||+||+.++......| +...........
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~----~~~~~~~~~~~~ 79 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF----LAMAGAEFVEVI 79 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE----EEEETTTTSSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE----EEechHHHHhhc
Confidence 345689999888888775531 1 12345688999999999999999998764322 122111111100
Q ss_pred -c-HHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCCH-----------------HHHHHHhcCcCC
Q 042739 256 -G-VIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDEF-----------------TQLESLAGVIDR 316 (505)
Q Consensus 256 -~-~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------------~~~~~l~~~l~~ 316 (505)
+ ...... ..+.......+.+|+||+++ .. ..+..++..+..
T Consensus 80 ~~~~~~~~~-------------------~~~~~a~~~~~~vl~iDeid-~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 139 (262)
T 2qz4_A 80 GGLGAARVR-------------------SLFKEARARAPCIVYIDEID-AVGKKRSTTMSGFSNTEEEQTLNQLLVEMDG 139 (262)
T ss_dssp TTHHHHHHH-------------------HHHHHHHHTCSEEEEEECC--------------------CHHHHHHHHHHHT
T ss_pred cChhHHHHH-------------------HHHHHHHhcCCeEEEEeCcc-hhhccccccccCccchhHHHHHHHHHHHhhC
Confidence 0 000111 11122222457899999994 22 112233322221
Q ss_pred C--CCCCEEEEEeCcchhhc-cc----CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChH-HH
Q 042739 317 F--SPGSRIIITTRDKRVLD-KC----EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPL-AL 388 (505)
Q Consensus 317 ~--~~~~~iliTsR~~~~~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al 388 (505)
. ..+..+|.||.....+. .. .....+.++..+.++-.+++...+..... ..........+++.+.|++- .|
T Consensus 140 ~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~l 218 (262)
T 2qz4_A 140 MGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSGADI 218 (262)
T ss_dssp CCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCHHHH
T ss_pred cCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCHHHH
Confidence 1 23455666665443211 11 22357889999999999999877632222 11222234678888888754 56
Q ss_pred HHHHHh
Q 042739 389 EVLGSS 394 (505)
Q Consensus 389 ~~~~~~ 394 (505)
..+...
T Consensus 219 ~~l~~~ 224 (262)
T 2qz4_A 219 ANICNE 224 (262)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 45
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.62 E-value=6.1e-07 Score=87.67 Aligned_cols=184 Identities=14% Similarity=0.160 Sum_probs=103.0
Q ss_pred CCCCCceechhhHHHHHHhhhc----------cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeeccccccc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCL----------ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNK 254 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 254 (505)
.....++|.+...+.|.+.+.. .....+.+.|+|++|+|||+||+.++......| +......
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~----~~v~~~~---- 119 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSD---- 119 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE----EEEEHHH----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEeeHHH----
Confidence 3445689999999999887631 112245688999999999999999999874322 1111110
Q ss_pred ccHHHHHHHHHHHHhCCCCccCCCCc-hHHH-HhccCCCeEEEEEeCCCCCH-------------HHHHHHhcCcC---C
Q 042739 255 LGVIRVRDEVISQVLGENLKVGTLTI-PQNI-KKGLQRMKVLIVLDDVHDEF-------------TQLESLAGVID---R 316 (505)
Q Consensus 255 ~~~~~~~~~ll~~~~~~~~~~~~~~~-~~~l-~~~l~~~~~LlVlDdv~~~~-------------~~~~~l~~~l~---~ 316 (505)
+..... ..... ...+ ......++.+|+||+++ .. .....++..+. .
T Consensus 120 ---------l~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid-~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~ 183 (355)
T 2qp9_X 120 ---------LVSKWM------GESEKLVKQLFAMARENKPSIIFIDQVD-ALTGTRGEGESEASRRIKTELLVQMNGVGN 183 (355)
T ss_dssp ---------HHSCC---------CHHHHHHHHHHHHHTSSEEEEEECGG-GGTC------CTHHHHHHHHHHHHHHHCC-
T ss_pred ---------Hhhhhc------chHHHHHHHHHHHHHHcCCeEEEEechH-hhcccCCCCcchHHHHHHHHHHHHhhcccc
Confidence 000000 00000 1111 11223468899999994 21 11233332221 1
Q ss_pred CCCCCEEEEEeCcchhhc-c--cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcC-ChHHHHHHH
Q 042739 317 FSPGSRIIITTRDKRVLD-K--CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADG-NPLALEVLG 392 (505)
Q Consensus 317 ~~~~~~iliTsR~~~~~~-~--~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~~ 392 (505)
...+..||.||.....+. . -.....+.++..+.++-.+++...+...... ........|++.+.| .+-.|..++
T Consensus 184 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 184 DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV--LTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp --CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC--CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 123455555665432111 0 0234578899999999999998877332211 123456788899988 455666665
Q ss_pred Hh
Q 042739 393 SS 394 (505)
Q Consensus 393 ~~ 394 (505)
..
T Consensus 262 ~~ 263 (355)
T 2qp9_X 262 KD 263 (355)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 46
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.62 E-value=9.4e-07 Score=85.63 Aligned_cols=181 Identities=10% Similarity=0.080 Sum_probs=102.0
Q ss_pred hhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCC
Q 042739 194 NSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENL 273 (505)
Q Consensus 194 ~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 273 (505)
+...+.|...+..+ .-.+.+.++|++|+|||++|+.+++.+....... . ..+. . ......+.......-.
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~-~~c~---~----c~~c~~~~~~~~~d~~ 77 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-H-KSCG---H----CRGCQLMQAGTHPDYY 77 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-T-BCCS---C----SHHHHHHHHTCCTTEE
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-C-CCCC---C----CHHHHHHhcCCCCCEE
Confidence 34556666666532 2356789999999999999999998764322100 0 0000 0 0000000000000000
Q ss_pred cc------CCC--CchHHHHhcc-----CCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcch-hhcc-cC
Q 042739 274 KV------GTL--TIPQNIKKGL-----QRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDKR-VLDK-CE 337 (505)
Q Consensus 274 ~~------~~~--~~~~~l~~~l-----~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~~-~~~~-~~ 337 (505)
.. ... +....+.+.+ .+++-++|+|+++ .+.+....++..+...+.++.+|++|.+.. +... ..
T Consensus 78 ~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~S 157 (334)
T 1a5t_A 78 TLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRS 157 (334)
T ss_dssp EECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred EEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhh
Confidence 00 000 0111222222 2457799999995 344556667766665556677777776542 2221 13
Q ss_pred CCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHH
Q 042739 338 VSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVL 391 (505)
Q Consensus 338 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 391 (505)
....+++.+++.++..+++.... . ...+.+..+++.++|.|..+..+
T Consensus 158 Rc~~~~~~~~~~~~~~~~L~~~~----~---~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 158 RCRLHYLAPPPEQYAVTWLSREV----T---MSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHC----C---CCHHHHHHHHHHTTTCHHHHHHT
T ss_pred cceeeeCCCCCHHHHHHHHHHhc----C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 44679999999999999998775 1 12345678999999999876544
No 47
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.61 E-value=5.8e-08 Score=93.19 Aligned_cols=147 Identities=16% Similarity=0.172 Sum_probs=86.6
Q ss_pred ceechhhHHHHHHhhhcc-------------CCCceEEEEeccCcchHHHHHHHHHhhhccccc--c-eEEEeecccccc
Q 042739 190 FIGINSRIEEIKSLLCLE-------------SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQ--G-NCFMANVREESN 253 (505)
Q Consensus 190 fvGR~~el~~l~~~L~~~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~-~~~~~~~~~~~~ 253 (505)
++|.+...+.|.+.+... ......+.|+|++|+|||+||+.+++.+..... . .+...+......
T Consensus 33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~ 112 (309)
T 3syl_A 33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVG 112 (309)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCC
T ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhh
Confidence 788888888887765421 234557899999999999999999887643211 1 112221111100
Q ss_pred c--ccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCC----------CHHHHHHHhcCcCCCCCCC
Q 042739 254 K--LGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHD----------EFTQLESLAGVIDRFSPGS 321 (505)
Q Consensus 254 ~--~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~----------~~~~~~~l~~~l~~~~~~~ 321 (505)
. ....... ...+.. . ++.+|+||+++. .......+...+.....+.
T Consensus 113 ~~~g~~~~~~-------------------~~~~~~-~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 170 (309)
T 3syl_A 113 QYIGHTAPKT-------------------KEVLKR-A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDL 170 (309)
T ss_dssp SSTTCHHHHH-------------------HHHHHH-H--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTC
T ss_pred hcccccHHHH-------------------HHHHHh-c--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCE
Confidence 0 0000000 111111 1 245999999930 4445556655555445567
Q ss_pred EEEEEeCcch----------hhcccCCCcEEEcCCCCHhHHHHHHHHhh
Q 042739 322 RIIITTRDKR----------VLDKCEVSNIFEVKGLEHNKAFELFCRKA 360 (505)
Q Consensus 322 ~iliTsR~~~----------~~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 360 (505)
.+|+||.... +... ....+.+++++.++..+++...+
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 171 VVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp EEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHH
Confidence 7888875432 1111 12679999999999999998776
No 48
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.59 E-value=1e-06 Score=88.71 Aligned_cols=187 Identities=16% Similarity=0.171 Sum_probs=106.7
Q ss_pred CCCCCceechhhHHHHHHhhhc----------cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeeccccccc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCL----------ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNK 254 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 254 (505)
.....++|.+...+.|.+.+.. .....+.+.|+|++|+|||+||+.++..... ..++..+..
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~~----- 202 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSS----- 202 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECCC-----
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeHH-----
Confidence 4456789999999999887631 1123568899999999999999999998621 111111111
Q ss_pred ccHHHHHHHHHHHHhCCCCccCCCCchHHHH-hccCCCeEEEEEeCCCCCH-------------HHHHHHhcCcCCC---
Q 042739 255 LGVIRVRDEVISQVLGENLKVGTLTIPQNIK-KGLQRMKVLIVLDDVHDEF-------------TQLESLAGVIDRF--- 317 (505)
Q Consensus 255 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~-------------~~~~~l~~~l~~~--- 317 (505)
. +.....+. .......+. ......+.+|+||+++ .. .....++..+...
T Consensus 203 -~-------l~~~~~g~-----~~~~~~~~f~~a~~~~~~vl~iDEid-~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 268 (444)
T 2zan_A 203 -D-------LVSKWLGE-----SEKLVKNLFQLARENKPSIIFIDEID-SLCGSRSENESEAARRIKTEFLVQMQGVGVD 268 (444)
T ss_dssp ----------------------CCCTHHHHHHHHHHSCSEEEEESCTT-TTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC
T ss_pred -H-------HHhhhcch-----HHHHHHHHHHHHHHcCCeEEEEechH-hhccCCCCccccHHHHHHHHHHHHHhCcccC
Confidence 0 01111110 111122222 2223568899999994 22 2334455444332
Q ss_pred CCCCEEEEEeCcchhhcc---cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCC-hHHHHHHHH
Q 042739 318 SPGSRIIITTRDKRVLDK---CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGN-PLALEVLGS 393 (505)
Q Consensus 318 ~~~~~iliTsR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~~ 393 (505)
..+..||.||.....+.. -.....+.++..+.++-.+++...+..... .........|++.+.|+ +-.|..++.
T Consensus 269 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 269 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN--SLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp CSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE--ECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345666666654422110 123357889999999999999887632221 11235567888999884 556666655
Q ss_pred hh
Q 042739 394 SL 395 (505)
Q Consensus 394 ~l 395 (505)
..
T Consensus 347 ~a 348 (444)
T 2zan_A 347 DA 348 (444)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 49
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.59 E-value=8.9e-07 Score=84.30 Aligned_cols=184 Identities=15% Similarity=0.106 Sum_probs=101.6
Q ss_pred CCCCCceechhhHHHHHHhhhcc----------CCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeeccccccc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLE----------SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNK 254 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 254 (505)
.....++|.+..++.|.+.+... ....+.+.|+|++|+|||+||+.++......| +..+.......
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~----~~i~~~~l~~~ 93 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF----LNISAASLTSK 93 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE----EEEESTTTSSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe----EEeeHHHHhhc
Confidence 44567999999999998877421 12356889999999999999999998764322 11111111000
Q ss_pred --ccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCC------------HHHHHHHhcCc---CCC
Q 042739 255 --LGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDE------------FTQLESLAGVI---DRF 317 (505)
Q Consensus 255 --~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------------~~~~~~l~~~l---~~~ 317 (505)
......... .+......++.+|+||+++.- ......++..+ ...
T Consensus 94 ~~~~~~~~~~~-------------------~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 154 (297)
T 3b9p_A 94 YVGDGEKLVRA-------------------LFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN 154 (297)
T ss_dssp SCSCHHHHHHH-------------------HHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--
T ss_pred ccchHHHHHHH-------------------HHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc
Confidence 001111111 111112345789999999310 11112222211 111
Q ss_pred --CCCCEEEEEeCcchhhcc-c--CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChH-HHHHH
Q 042739 318 --SPGSRIIITTRDKRVLDK-C--EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPL-ALEVL 391 (505)
Q Consensus 318 --~~~~~iliTsR~~~~~~~-~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~ 391 (505)
+.+..||.||.....+.. . .....+.++..+.++-..++...+...... ........+++.+.|++- .|..+
T Consensus 155 ~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 155 PDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP--LDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp ----CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC--SCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 134456666665321110 0 123567888888888888887766322111 123557788899999886 66555
Q ss_pred HH
Q 042739 392 GS 393 (505)
Q Consensus 392 ~~ 393 (505)
..
T Consensus 233 ~~ 234 (297)
T 3b9p_A 233 AK 234 (297)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 50
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.56 E-value=5.1e-07 Score=87.21 Aligned_cols=182 Identities=15% Similarity=0.092 Sum_probs=105.6
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEV 264 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 264 (505)
...+.++|.+..++.|.+++..+ ...+.+.++|++|+|||++|+.+++.+... .+.+. . +. .+ ...+...
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~-~---~~-~~-~~~i~~~ 92 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN-G---SD-CK-IDFVRGP 92 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE-T---TT-CC-HHHHHTH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc-c---cc-cC-HHHHHHH
Confidence 44567999999999999999743 234678889999999999999999887422 22222 1 11 11 2222222
Q ss_pred HHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCC-C-HHHHHHHhcCcCCCCCCCEEEEEeCcchhhc-c-cCCCc
Q 042739 265 ISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHD-E-FTQLESLAGVIDRFSPGSRIIITTRDKRVLD-K-CEVSN 340 (505)
Q Consensus 265 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~-~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~-~-~~~~~ 340 (505)
+...... ....+++.+|+||+++. . .+....+...+.....++.+|+||....... . .....
T Consensus 93 ~~~~~~~--------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 93 LTNFASA--------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HHHHHHB--------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred HHHHHhh--------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 2221110 00123678999999942 2 3345555554443345678888876543111 0 01234
Q ss_pred EEEcCCCCHhHHHHHH-------HHhhcCCCCCChhHH-HHHHHHHHHhcCChHHHHHHH
Q 042739 341 IFEVKGLEHNKAFELF-------CRKAFGQNNRSHDLY-QLSQRVVCYADGNPLALEVLG 392 (505)
Q Consensus 341 ~~~l~~L~~~ea~~L~-------~~~~~~~~~~~~~~~-~~~~~i~~~~~G~PLal~~~~ 392 (505)
.+++++++.++-.+++ ...+..... .... +....+++.++|++..+....
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~--~~~~~~~~~~l~~~~~gd~R~a~~~L 216 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGI--AIADMKVVAALVKKNFPDFRKTIGEL 216 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC--CBSCHHHHHHHHHHTCSCTTHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHhCCCCHHHHHHHH
Confidence 7999999988843332 222211111 1112 567788899999887554333
No 51
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.56 E-value=2.1e-06 Score=85.10 Aligned_cols=186 Identities=16% Similarity=0.145 Sum_probs=101.7
Q ss_pred CCCCCceechhhHHHHHHhhhc----------cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeeccccccc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCL----------ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNK 254 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 254 (505)
.....++|.+..++.|...+.. .....+.+.|+|++|+|||+||+.++......| +..+.......
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~~~ 187 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF----FNISAASLTSK 187 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE----EEECSCCC---
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE----EEeeHHHhhcc
Confidence 4456799999999999988732 112246889999999999999999988754322 22222111110
Q ss_pred ccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCCH-------------HHHHHHhcCcC----CC
Q 042739 255 LGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDEF-------------TQLESLAGVID----RF 317 (505)
Q Consensus 255 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~~l~~~l~----~~ 317 (505)
........+ ...+.......+.+|+||++ +.. .....++..+. ..
T Consensus 188 --~~g~~~~~~---------------~~~~~~a~~~~~~il~iDEi-d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 188 --YVGEGEKLV---------------RALFAVARELQPSIIFIDQV-DSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp ------CHHHH---------------HHHHHHHHHSSSEEEEEETG-GGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred --ccchHHHHH---------------HHHHHHHHhcCCeEEEEECc-hhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 000000000 11111111235679999999 321 11122222111 11
Q ss_pred CCCCEEEEEeCcchhhc-c-c-CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChH-HHHHHHH
Q 042739 318 SPGSRIIITTRDKRVLD-K-C-EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPL-ALEVLGS 393 (505)
Q Consensus 318 ~~~~~iliTsR~~~~~~-~-~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~~~ 393 (505)
.....||.||.....+. . . .....+.++..+.++-.+++...+...... ...+....|++.+.|+.- .|..+..
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 23445555665432111 0 1 223468899999999999998777332221 223467788899988654 6666554
Q ss_pred h
Q 042739 394 S 394 (505)
Q Consensus 394 ~ 394 (505)
.
T Consensus 328 ~ 328 (389)
T 3vfd_A 328 D 328 (389)
T ss_dssp H
T ss_pred H
Confidence 3
No 52
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.54 E-value=4.6e-07 Score=79.53 Aligned_cols=50 Identities=26% Similarity=0.329 Sum_probs=41.8
Q ss_pred CCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 186 DLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
....++||+.+++.+.+.+.. ...+.+.|+|++|+|||+||+.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345699999999999999864 33567789999999999999999987643
No 53
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.53 E-value=3.8e-06 Score=80.83 Aligned_cols=185 Identities=15% Similarity=0.134 Sum_probs=102.6
Q ss_pred CCCCceechhhHHHHHHhhhc----------cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccc
Q 042739 186 DLDGFIGINSRIEEIKSLLCL----------ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKL 255 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 255 (505)
.-..++|.+...+.|.+.+.. .....+.+.|+|++|+|||+||+.++..... ..++..........
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~~l~~~- 85 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLVSK- 85 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECCSSCCS-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhHHHHhh-
Confidence 345688888888888776531 1123467899999999999999999988621 11111111111000
Q ss_pred cHHHHHHHHHHHHhCCCCccCCCC-chHHHH-hccCCCeEEEEEeCCCCCH-------------HHHHHHhcCcCC---C
Q 042739 256 GVIRVRDEVISQVLGENLKVGTLT-IPQNIK-KGLQRMKVLIVLDDVHDEF-------------TQLESLAGVIDR---F 317 (505)
Q Consensus 256 ~~~~~~~~ll~~~~~~~~~~~~~~-~~~~l~-~~l~~~~~LlVlDdv~~~~-------------~~~~~l~~~l~~---~ 317 (505)
...... ....+. .....++.+|+||+++ .. .....++..+.. .
T Consensus 86 ------------------~~g~~~~~~~~lf~~a~~~~~~vl~iDEid-~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 146 (322)
T 1xwi_A 86 ------------------WLGESEKLVKNLFQLARENKPSIIFIDEID-SLCGSRSENESEAARRIKTEFLVQMQGVGVD 146 (322)
T ss_dssp ------------------SCCSCHHHHHHHHHHHHHTSSEEEEEETTT-GGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC
T ss_pred ------------------hhhHHHHHHHHHHHHHHhcCCcEEEeecHH-HhccccccccchHHHHHHHHHHHHHhccccc
Confidence 000000 011111 1123568899999993 22 112223322221 1
Q ss_pred CCCCEEEEEeCcchhhcc---cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCC-hHHHHHHHH
Q 042739 318 SPGSRIIITTRDKRVLDK---CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGN-PLALEVLGS 393 (505)
Q Consensus 318 ~~~~~iliTsR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~~ 393 (505)
..+..||.||........ -.....+.++..+.++-.+++...+...... ........|++.+.|+ +-.|..++.
T Consensus 147 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 147 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS--LTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp CTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC--CCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 234455556644321110 0234578899999999999998876332211 1235577899999987 555776665
Q ss_pred hh
Q 042739 394 SL 395 (505)
Q Consensus 394 ~l 395 (505)
..
T Consensus 225 ~A 226 (322)
T 1xwi_A 225 DA 226 (322)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 54
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.52 E-value=2.1e-06 Score=83.41 Aligned_cols=184 Identities=15% Similarity=0.186 Sum_probs=106.3
Q ss_pred CCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc-ccceEEEeecccccccccHHHHHHHHH
Q 042739 187 LDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY-FQGNCFMANVREESNKLGVIRVRDEVI 265 (505)
Q Consensus 187 ~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~ll 265 (505)
...++|.+..++.|...+..+. .+.+.++|++|+||||+|+.++..+... +...+.-.+. +...+. ...++.+
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~---~~~~~~-~~ir~~i 97 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA---SDDRGI-DVVRNQI 97 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT---TSCCSH-HHHHTHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC---cccccH-HHHHHHH
Confidence 3557899999999998886432 2238899999999999999999876432 2111111111 111111 1122222
Q ss_pred HHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcch-hhcc-cCCCcEE
Q 042739 266 SQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDKR-VLDK-CEVSNIF 342 (505)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~~-~~~~-~~~~~~~ 342 (505)
..+.... ..+.+.+-++|+|+++ -.......+...+........+|+++.... +... ......+
T Consensus 98 ~~~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 98 KDFASTR-------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp HHHHHBC-------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHHHhhc-------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 2211000 0012346789999995 233444555544443345666777665432 1111 1234578
Q ss_pred EcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHHHHHH
Q 042739 343 EVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLALEVL 391 (505)
Q Consensus 343 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 391 (505)
.+.+++.++..+.+...+..... ....+..+.+++.++|.+.-+..+
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~--~i~~~~~~~i~~~s~G~~r~~~~~ 211 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKL--KLSPNAEKALIELSNGDMRRVLNV 211 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTC--CBCHHHHHHHHHHHTTCHHHHHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999988876622221 122456778999999998854433
No 55
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.46 E-value=4.4e-07 Score=76.46 Aligned_cols=114 Identities=17% Similarity=0.033 Sum_probs=66.5
Q ss_pred CceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHH
Q 042739 189 GFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQV 268 (505)
Q Consensus 189 ~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 268 (505)
.++|++..++++.+.+.........|.|+|++|+|||+||+.+++.........+ +. +.........
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~-~~~~~~~~~~----------- 68 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YR-ELTPDNAPQL----------- 68 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EE-ECCTTTSSCH-----------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EE-CCCCCcchhh-----------
Confidence 5899999999999888643334456789999999999999999876533222222 32 2222211000
Q ss_pred hCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc
Q 042739 269 LGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK 330 (505)
Q Consensus 269 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~ 330 (505)
...+.. . +..+|+||+++ -..+....+...+.......++|.||...
T Consensus 69 ------------~~~~~~-a--~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 69 ------------NDFIAL-A--QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp ------------HHHHHH-H--TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred ------------hcHHHH-c--CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 111111 1 22478999995 23344444544443334567888887653
No 56
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.37 E-value=1.9e-06 Score=87.35 Aligned_cols=149 Identities=14% Similarity=0.101 Sum_probs=83.3
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccc------cceEEEeecccccccccHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYF------QGNCFMANVREESNKLGVI 258 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 258 (505)
...+.+|||+.+++.+...+... ....+.|+|++|+|||+||+.++..+...+ ...++..++.
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--------- 245 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------- 245 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---------
Confidence 34467999999999999999742 234567999999999999999999864321 1112221111
Q ss_pred HHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCCHHHHHHHhcCcCCCCCCCEEEEEeCcchh------
Q 042739 259 RVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDEFTQLESLAGVIDRFSPGSRIIITTRDKRV------ 332 (505)
Q Consensus 259 ~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~------ 332 (505)
.... +.........+...-..++.+|++|. ..+....+...+. ....++|.+|.....
T Consensus 246 -------~~~~----g~~e~~~~~~~~~~~~~~~~iLfiD~---~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 -------TKYR----GEFEDRLKKVMDEIRQAGNIILFIDA---AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEECC-----------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred -------cccc----chHHHHHHHHHHHHHhcCCeEEEEeC---chhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence 0000 00001112222222235678999992 2233334444443 234566666654431
Q ss_pred hcc-cCCCcEEEcCCCCHhHHHHHHHHhh
Q 042739 333 LDK-CEVSNIFEVKGLEHNKAFELFCRKA 360 (505)
Q Consensus 333 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~ 360 (505)
... ......+.+++++.++..+++....
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 010 1123469999999999999998765
No 57
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.34 E-value=5.1e-06 Score=79.18 Aligned_cols=177 Identities=14% Similarity=0.190 Sum_probs=99.1
Q ss_pred CCCCceechhhHHHHHHhhhc-----------cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeeccccccc
Q 042739 186 DLDGFIGINSRIEEIKSLLCL-----------ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNK 254 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 254 (505)
....++|.+..++.|.+.+.. +-...+.+.|+|++|+|||+||+.++......| +..+.
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~----i~v~~------ 82 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF----ISIKG------ 82 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE----EEECH------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE----EEEEh------
Confidence 345689999988888887642 123456789999999999999999998764322 11111
Q ss_pred ccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCCHH----------------HHHHHhcCcCCC-
Q 042739 255 LGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDEFT----------------QLESLAGVIDRF- 317 (505)
Q Consensus 255 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~~l~~~l~~~- 317 (505)
. .+.....+.. .......+.......+.+|+||++ +... ....++..+...
T Consensus 83 ---~----~l~~~~~g~~----~~~~~~~f~~a~~~~p~il~iDEi-d~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 83 ---P----ELLTMWFGES----EANVREIFDKARQAAPCVLFFDEL-DSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp ---H----HHHHHHHTTC----TTHHHHHHHHHHHTCSEEEEECST-THHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred ---H----HHHhhhcCch----HHHHHHHHHHHHhcCCeEEEEECh-HHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 1 1122222211 001122223333356899999999 4211 123333222211
Q ss_pred -CCCCEEEEEeCcchhhc-c-c---CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChHH
Q 042739 318 -SPGSRIIITTRDKRVLD-K-C---EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPLA 387 (505)
Q Consensus 318 -~~~~~iliTsR~~~~~~-~-~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 387 (505)
..+..||.||.....+. . . .....+.++..+.++-.+++...+........ .....++..+.|.|-+
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~---~~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD---VDLEFLAKMTNGFSGA 223 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSS---CCHHHHHHTCSSCCHH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCcc---chHHHHHHHcCCCCHH
Confidence 23456666665542221 1 1 23357899999999999998777632221111 1134566677777654
No 58
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.34 E-value=2.1e-06 Score=87.19 Aligned_cols=180 Identities=17% Similarity=0.194 Sum_probs=100.7
Q ss_pred CCceechhhHHHHHHhhhcc-----------CCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeeccccccc-c
Q 042739 188 DGFIGINSRIEEIKSLLCLE-----------SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNK-L 255 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~ 255 (505)
..++|.+..+++|.+++... ....+.+.|+|++|+|||+||+.++......| +..++...... .
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f----v~vn~~~l~~~~~ 279 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKLA 279 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE----EEEEHHHHHTSCT
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE----EEEEchHhhhhhc
Confidence 45899999999999887532 23456789999999999999999988763322 22221111100 0
Q ss_pred c-HHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC---C------C---HHHHHHHhcCcCC--CCCC
Q 042739 256 G-VIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH---D------E---FTQLESLAGVIDR--FSPG 320 (505)
Q Consensus 256 ~-~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~---~------~---~~~~~~l~~~l~~--~~~~ 320 (505)
+ ..... ...+.....+++.+|+||+++ . . ......|+..+.. ...+
T Consensus 280 g~~~~~~-------------------~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 280 GESESNL-------------------RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp THHHHHH-------------------HHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred chhHHHH-------------------HHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 0 00000 122223334567899999992 0 1 1122333332221 1234
Q ss_pred CEEEEEeCcchh-hcc----cCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCC-hHHHHHHHH
Q 042739 321 SRIIITTRDKRV-LDK----CEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGN-PLALEVLGS 393 (505)
Q Consensus 321 ~~iliTsR~~~~-~~~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~~ 393 (505)
..||.||..... ... ......+.++..+.++-.+++..++....... .....+++..+.|+ +-.|..+..
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~---~~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD---DVDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT---TCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc---hhhHHHHHHHccCCcHHHHHHHHH
Confidence 555656654422 111 12345789999999999999988773222111 11235566777775 545555443
No 59
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.30 E-value=2.4e-06 Score=93.39 Aligned_cols=50 Identities=26% Similarity=0.347 Sum_probs=41.5
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...+.++||+.++..+.+.|... ..+.+.|+|++|+|||+||+.++..+.
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 44566999999999999998643 244578999999999999999998863
No 60
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.30 E-value=4.1e-06 Score=79.84 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=39.4
Q ss_pred CceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 189 GFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 189 ~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.++|++..+.++.+.+.........|.|+|++|+|||++|+.+++...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 589999999999888865333445688999999999999999988653
No 61
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.29 E-value=4.7e-06 Score=79.22 Aligned_cols=147 Identities=12% Similarity=0.063 Sum_probs=90.0
Q ss_pred echhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh---cccccceEEEeecccccccccHHHHHHHHHHHH
Q 042739 192 GINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI---SRYFQGNCFMANVREESNKLGVIRVRDEVISQV 268 (505)
Q Consensus 192 GR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 268 (505)
|-+..++.|...+..+. .+...++|++|+|||++|..+++.. ...++....+. . .....+ .+..++++...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~-~--~~~~~~-id~ir~li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-P--EGENIG-IDDIRTIKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-C--SSSCBC-HHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc-C--CcCCCC-HHHHHHHHHHH
Confidence 34556777888876543 6789999999999999999998752 11123333332 1 000111 22223333332
Q ss_pred hCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc-hhhcccCCCcEEEcCC
Q 042739 269 LGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK-RVLDKCEVSNIFEVKG 346 (505)
Q Consensus 269 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~~~~~~~~l~~ 346 (505)
...+ ..+++-++|+|+++ .+......|+..+...++.+.+|++|.+. .+.+.+... .+++.+
T Consensus 75 ~~~p---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 75 NYSP---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp TSCC---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred hhcc---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCC
Confidence 2111 12346689999995 34556667777666556677777776544 333333334 899999
Q ss_pred CCHhHHHHHHHHhh
Q 042739 347 LEHNKAFELFCRKA 360 (505)
Q Consensus 347 L~~~ea~~L~~~~~ 360 (505)
++.++..+.+.+..
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998776
No 62
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.27 E-value=3.8e-06 Score=80.43 Aligned_cols=49 Identities=16% Similarity=0.235 Sum_probs=38.9
Q ss_pred CceechhhHHHHHHhhhccC-------CCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 189 GFIGINSRIEEIKSLLCLES-------HDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 189 ~fvGR~~el~~l~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
.++|.+..++.+...+.... .....+.|+|++|+|||+||+.++.....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 47899999988888776421 11357999999999999999999988644
No 63
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.26 E-value=5.6e-06 Score=79.09 Aligned_cols=48 Identities=21% Similarity=0.215 Sum_probs=38.0
Q ss_pred CceechhhHHHHHHhhhc------------cCCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 189 GFIGINSRIEEIKSLLCL------------ESHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 189 ~fvGR~~el~~l~~~L~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.++|.+..++.+...+.. .......+.|+|++|+|||+||+.+++.+.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999998888877753 012345788999999999999999998874
No 64
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=2.8e-05 Score=75.91 Aligned_cols=173 Identities=20% Similarity=0.226 Sum_probs=98.6
Q ss_pred CCCCceechhhHHHHHHhhhc-----------cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccc-
Q 042739 186 DLDGFIGINSRIEEIKSLLCL-----------ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESN- 253 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~- 253 (505)
.-+...|-+...++|.+.+.. +-..++-+.++||+|+|||.||+.++......|- .........
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~----~v~~s~l~sk 221 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFI----RVSGAELVQK 221 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEE----EEEGGGGSCS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCce----EEEhHHhhcc
Confidence 335578999999888876642 2233567889999999999999999998755432 221211111
Q ss_pred cc-cHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCCH----------------HHHHHHhcCcCC
Q 042739 254 KL-GVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDEF----------------TQLESLAGVIDR 316 (505)
Q Consensus 254 ~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~~l~~~l~~ 316 (505)
.. .....++.++. ..-...+++|+||+++ .. ..+..++..+..
T Consensus 222 ~vGese~~vr~lF~-------------------~Ar~~aP~IIFiDEiD-ai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 281 (405)
T 4b4t_J 222 YIGEGSRMVRELFV-------------------MAREHAPSIIFMDEID-SIGSTRVEGSGGGDSEVQRTMLELLNQLDG 281 (405)
T ss_dssp STTHHHHHHHHHHH-------------------HHHHTCSEEEEEESSS-CCTTSCSCSSSGGGGHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHH-------------------HHHHhCCceEeeecch-hhccCCCCCCCCCcHHHHHHHHHHHHhhhc
Confidence 11 11111222221 1123468999999993 11 122333333322
Q ss_pred C--CCCCEEEEEeCcchhh-----cccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCh
Q 042739 317 F--SPGSRIIITTRDKRVL-----DKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNP 385 (505)
Q Consensus 317 ~--~~~~~iliTsR~~~~~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (505)
. ..+..||.||.....+ ........+.++..+.++-.++|..+..+...... -....|++.|.|+-
T Consensus 282 ~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~d---vdl~~lA~~t~G~S 354 (405)
T 4b4t_J 282 FETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRG---INLRKVAEKMNGCS 354 (405)
T ss_dssp TTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSS---CCHHHHHHHCCSCC
T ss_pred cCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCcc---CCHHHHHHHCCCCC
Confidence 2 2344556666544321 11234568999999999999999877633221111 01456777888764
No 65
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.18 E-value=3.5e-06 Score=78.68 Aligned_cols=50 Identities=28% Similarity=0.251 Sum_probs=36.7
Q ss_pred CCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 188 DGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
+.++|.+..+..+.+.+.........+.|+|++|+|||+||+.+++....
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 45899999999888777542233456889999999999999999987543
No 66
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=6.4e-05 Score=74.49 Aligned_cols=173 Identities=22% Similarity=0.313 Sum_probs=97.7
Q ss_pred CCCCceechhhHHHHHHhhhc-----------cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccc-
Q 042739 186 DLDGFIGINSRIEEIKSLLCL-----------ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESN- 253 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~- 253 (505)
.-..+.|-+...++|.+.+.. +-..++-|.++||+|+|||.||+.++......|- .........
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~----~v~~s~l~sk 254 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI----FSPASGIVDK 254 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE----EEEGGGTCCS
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEehhhhccc
Confidence 345678999998888876642 1233678999999999999999999998754432 222211111
Q ss_pred ccc-HHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCC------------C---HHHHHHHhcCcCCC
Q 042739 254 KLG-VIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHD------------E---FTQLESLAGVIDRF 317 (505)
Q Consensus 254 ~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~------------~---~~~~~~l~~~l~~~ 317 (505)
..+ ....++.++ ...-...+++|+||+++. + ...+..++..+...
T Consensus 255 ~~Gese~~ir~~F-------------------~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 255 YIGESARIIREMF-------------------AYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp SSSHHHHHHHHHH-------------------HHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred cchHHHHHHHHHH-------------------HHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 111 111111111 111235689999999930 0 01122333333211
Q ss_pred --CCCCEEEEEeCcchhhc-cc----CCCcEEEcCCCCHhHHHHHHHHhhcCCCCC-ChhHHHHHHHHHHHhcCCh
Q 042739 318 --SPGSRIIITTRDKRVLD-KC----EVSNIFEVKGLEHNKAFELFCRKAFGQNNR-SHDLYQLSQRVVCYADGNP 385 (505)
Q Consensus 318 --~~~~~iliTsR~~~~~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~~~~i~~~~~G~P 385 (505)
..+..||.||-....+. .+ .....+.++..+.++-.++|..+....... ..+ ...+++.+.|+-
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 23456676765543221 11 134578898889888888887766332211 111 456777887764
No 67
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.13 E-value=1.1e-05 Score=75.03 Aligned_cols=182 Identities=15% Similarity=0.106 Sum_probs=95.0
Q ss_pred CCCCCceechhhHHHHHHhhhc---c-------CCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeeccccccc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCL---E-------SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNK 254 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~---~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 254 (505)
.....++|.+...+++.+.+.. . ....+-+.|+|++|+|||+||+.++......| +.+. .......
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~~ 84 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVEM 84 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTTS
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHHH
Confidence 3445689998888777665431 0 11244588999999999999999998764322 2221 1111000
Q ss_pred ccHHHHHHHHHHHHhCCCCccCCCC-c-hHHHHhccCCCeEEEEEeCCC---CC------------HHHHHHHhcCcCC-
Q 042739 255 LGVIRVRDEVISQVLGENLKVGTLT-I-PQNIKKGLQRMKVLIVLDDVH---DE------------FTQLESLAGVIDR- 316 (505)
Q Consensus 255 ~~~~~~~~~ll~~~~~~~~~~~~~~-~-~~~l~~~l~~~~~LlVlDdv~---~~------------~~~~~~l~~~l~~- 316 (505)
. ..... . ...+.......+.++++|+++ .. ......++..+..
T Consensus 85 ~-------------------~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (257)
T 1lv7_A 85 F-------------------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF 145 (257)
T ss_dssp C-------------------CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC
T ss_pred h-------------------hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCc
Confidence 0 00000 0 112222223457899999982 00 0122233322211
Q ss_pred -CCCCCEEEEEeCcchhh-ccc----CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcC-ChHHHH
Q 042739 317 -FSPGSRIIITTRDKRVL-DKC----EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADG-NPLALE 389 (505)
Q Consensus 317 -~~~~~~iliTsR~~~~~-~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~ 389 (505)
...+..||.||...... ... .....+.++..+.++-.+++............ .....++..+.| ++--|.
T Consensus 146 ~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~---~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 146 EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD---IDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHHHH
T ss_pred ccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHcCCCCHHHHH
Confidence 12345566666544321 111 12457888888888888888776522211111 113456677777 676665
Q ss_pred HHH
Q 042739 390 VLG 392 (505)
Q Consensus 390 ~~~ 392 (505)
.+.
T Consensus 223 ~l~ 225 (257)
T 1lv7_A 223 NLV 225 (257)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 68
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.12 E-value=1.4e-05 Score=86.39 Aligned_cols=155 Identities=16% Similarity=0.220 Sum_probs=87.0
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc------ccceEEEeecccccccccHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY------FQGNCFMANVREESNKLGVI 258 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~ 258 (505)
...+.++||+.+++.+.+.|... ....+.|+|++|+|||+||+.++..+... ....++..+......
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~----- 255 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA----- 255 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C-----
T ss_pred CCCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc-----
Confidence 34457999999999999999743 34567899999999999999999876321 122223221111100
Q ss_pred HHHHHHHHHHhCCCCccCCCCc-hHHHHhcc-CCCeEEEEEeCCCCC---------HHH-HHHHhcCcCCCCCCCEEEEE
Q 042739 259 RVRDEVISQVLGENLKVGTLTI-PQNIKKGL-QRMKVLIVLDDVHDE---------FTQ-LESLAGVIDRFSPGSRIIIT 326 (505)
Q Consensus 259 ~~~~~ll~~~~~~~~~~~~~~~-~~~l~~~l-~~~~~LlVlDdv~~~---------~~~-~~~l~~~l~~~~~~~~iliT 326 (505)
+.. ....... ...+...+ ..++.+|+||+++.- ... ...+...+. .....+|.+
T Consensus 256 -----------~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~a 321 (758)
T 1r6b_X 256 -----------GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGS 321 (758)
T ss_dssp -----------CCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEE
T ss_pred -----------ccc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEE
Confidence 000 0000000 11222222 235789999999521 222 223333332 245566666
Q ss_pred eCcchhhcc-------cCCCcEEEcCCCCHhHHHHHHHHhh
Q 042739 327 TRDKRVLDK-------CEVSNIFEVKGLEHNKAFELFCRKA 360 (505)
Q Consensus 327 sR~~~~~~~-------~~~~~~~~l~~L~~~ea~~L~~~~~ 360 (505)
|........ ......+.+++.+.++..+++....
T Consensus 322 t~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 322 TTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp ECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred eCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 654321100 1122368999999999998887654
No 69
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.12 E-value=7.8e-06 Score=71.42 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=33.5
Q ss_pred CCCcee----chhhHHHHHHhhhcc-CCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 187 LDGFIG----INSRIEEIKSLLCLE-SHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 187 ~~~fvG----R~~el~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.+.|++ ....++.+.+++..- ......+.|+|++|+|||||++.++..+.
T Consensus 9 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 9 LDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344554 334444444444321 12357899999999999999999998875
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.12 E-value=1.2e-05 Score=86.78 Aligned_cols=149 Identities=14% Similarity=0.090 Sum_probs=84.5
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccc------cceEEEeecccccccccHH
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYF------QGNCFMANVREESNKLGVI 258 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 258 (505)
...+.+|||+.+++.+...+... ...-+.|+|++|+|||++|+.+++.+.... ...++..+.
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------- 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------- 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc----------
Confidence 34457999999999999999742 234578999999999999999999863321 111221111
Q ss_pred HHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCCHHHHHHHhcCcCCCCCCCEEEEEeCcchhh-----
Q 042739 259 RVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDEFTQLESLAGVIDRFSPGSRIIITTRDKRVL----- 333 (505)
Q Consensus 259 ~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~----- 333 (505)
.....+.........+......++.+|++|.- .+....+...+. ....++|.||......
T Consensus 245 ----------g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~~---~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 ----------GTKYRGEFEDRLKKVMDEIRQAGNIILFIDAA---IDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEECC-----------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred ----------cccccchHHHHHHHHHHHHHhcCCEEEEEcCc---hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 00000000111122233333456889999922 233344444443 3456677666544310
Q ss_pred -cc-cCCCcEEEcCCCCHhHHHHHHHHhh
Q 042739 334 -DK-CEVSNIFEVKGLEHNKAFELFCRKA 360 (505)
Q Consensus 334 -~~-~~~~~~~~l~~L~~~ea~~L~~~~~ 360 (505)
.. ......+.+++++.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 00 0123579999999999999998655
No 71
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.10 E-value=2.8e-05 Score=78.58 Aligned_cols=97 Identities=9% Similarity=0.003 Sum_probs=59.0
Q ss_pred EEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEe---------Cc----c-hhh-cccCCCcEEEcCCCCHhHHHHHH
Q 042739 293 VLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITT---------RD----K-RVL-DKCEVSNIFEVKGLEHNKAFELF 356 (505)
Q Consensus 293 ~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTs---------R~----~-~~~-~~~~~~~~~~l~~L~~~ea~~L~ 356 (505)
-++++|+++ .+.+....|...+...... .+|+.| .+ . .+. .-......+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 499999996 4556677777666654444 344344 21 1 110 11123345799999999999999
Q ss_pred HHhhcCCCCCChhHHHHHHHHHHHh-cCChHHHHHHH
Q 042739 357 CRKAFGQNNRSHDLYQLSQRVVCYA-DGNPLALEVLG 392 (505)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~i~~~~-~G~PLal~~~~ 392 (505)
...+.... .....+.+..+++.+ +|.|.....+.
T Consensus 376 ~~~~~~~~--~~~~~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 376 KIRAQTEG--INISEEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHHT--CCBCHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHHhC--CCCCHHHHHHHHHHccCCCHHHHHHHH
Confidence 87752111 112345667788888 88887654443
No 72
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.08 E-value=3.8e-06 Score=78.57 Aligned_cols=53 Identities=21% Similarity=0.226 Sum_probs=39.7
Q ss_pred CCCCCceechhhHHHHHHhhhc----------cCCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCL----------ESHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
.....++|.+..++.|.+.+.. +....+-+.|+|++|+|||+||+.++.....
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4456799999988888876641 1112334789999999999999999987643
No 73
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=4.8e-05 Score=75.32 Aligned_cols=171 Identities=16% Similarity=0.222 Sum_probs=96.3
Q ss_pred CCCCceechhhHHHHHHhhhc-----------cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccc-
Q 042739 186 DLDGFIGINSRIEEIKSLLCL-----------ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESN- 253 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~- 253 (505)
.-..+.|-+...++|.+.+.. +-..++-|.++||+|+|||.||+.++......|- .........
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~----~v~~s~l~~~ 254 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFL----KLAAPQLVQM 254 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE----EEEGGGGCSS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEE----EEehhhhhhc
Confidence 345688999999998876431 2234678999999999999999999998755432 222211111
Q ss_pred ccc-HHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCCH----------------HHHHHHhcCcCC
Q 042739 254 KLG-VIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDEF----------------TQLESLAGVIDR 316 (505)
Q Consensus 254 ~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~~l~~~l~~ 316 (505)
..+ ....++.++. ..-...+++|+||++ +.. ..+..++..+..
T Consensus 255 ~vGese~~ir~lF~-------------------~A~~~aP~IifiDEi-Dal~~~R~~~~~~~~~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 255 YIGEGAKLVRDAFA-------------------LAKEKAPTIIFIDEL-DAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314 (434)
T ss_dssp CSSHHHHHHHHHHH-------------------HHHHHCSEEEEEECT-HHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHH-------------------HHHhcCCeEEeecch-hhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence 111 1111222211 111235899999999 210 112234433332
Q ss_pred CC--CCCEEEEEeCcchhhc-cc----CCCcEEEcCCCCHhHHHHHHHHhhcCCCC-CChhHHHHHHHHHHHhcCC
Q 042739 317 FS--PGSRIIITTRDKRVLD-KC----EVSNIFEVKGLEHNKAFELFCRKAFGQNN-RSHDLYQLSQRVVCYADGN 384 (505)
Q Consensus 317 ~~--~~~~iliTsR~~~~~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~-~~~~~~~~~~~i~~~~~G~ 384 (505)
.. .+..||.||.....+. .+ .....+.++..+.++-.++|..+...... ..-+ ...|++.+.|+
T Consensus 315 ~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 315 FSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp SCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred cCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 22 3445666665543221 11 23457899999999888888766522211 1111 45677777775
No 74
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=3.1e-05 Score=76.65 Aligned_cols=52 Identities=23% Similarity=0.289 Sum_probs=40.5
Q ss_pred CCCceechhhHHHHHHhhhc-----------cCCCceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 187 LDGFIGINSRIEEIKSLLCL-----------ESHDARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 187 ~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.....|-+...++|.+.+.. +-..++-+.++||+|+|||.||+.++......
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34678999988888876531 22346678999999999999999999987543
No 75
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.06 E-value=2.4e-06 Score=71.68 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=35.8
Q ss_pred CceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 189 GFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 189 ~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.++|++..++++.+.+.........|.|+|++|+|||++|+.+++...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 489999999999888764223344578999999999999998887643
No 76
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=0.00017 Score=71.39 Aligned_cols=172 Identities=15% Similarity=0.180 Sum_probs=96.4
Q ss_pred CCCceechhhHHHHHHhhhc-----------cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccc-c
Q 042739 187 LDGFIGINSRIEEIKSLLCL-----------ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESN-K 254 (505)
Q Consensus 187 ~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~ 254 (505)
-....|-+...++|.+.+.. +-..++-|.++|++|+|||.||+.++......|- ......... .
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi----~vs~s~L~sk~ 283 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFI----RVIGSELVQKY 283 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEE----EEEGGGGCCCS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeE----EEEhHHhhccc
Confidence 34688999999988876531 2234678899999999999999999998755432 221211111 1
Q ss_pred cc-HHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCCH----------------HHHHHHhcCcCCC
Q 042739 255 LG-VIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDEF----------------TQLESLAGVIDRF 317 (505)
Q Consensus 255 ~~-~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~~l~~~l~~~ 317 (505)
.+ ....++.++ ...-...+++|++|++. .. .....++..+...
T Consensus 284 vGesek~ir~lF-------------------~~Ar~~aP~IIfiDEiD-ai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 284 VGEGARMVRELF-------------------EMARTKKACIIFFDEID-AVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp SSHHHHHHHHHH-------------------HHHHHTCSEEEEEECCT-TTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHH-------------------HHHHhcCCceEeecccc-cccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 11 111112221 11223568999999993 11 1122223222222
Q ss_pred --CCCCEEEEEeCcchhh-----cccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCh
Q 042739 318 --SPGSRIIITTRDKRVL-----DKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNP 385 (505)
Q Consensus 318 --~~~~~iliTsR~~~~~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (505)
..+..||.||-....+ ........+.++..+.++-.++|..++........ -....|++.|.|+-
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~d---vdl~~LA~~T~GfS 415 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERG---IRWELISRLCPNST 415 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSS---CCHHHHHHHCCSCC
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCC---CCHHHHHHHCCCCC
Confidence 2334455566443221 11134568999999999999999877633221111 01456777887763
No 77
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.01 E-value=4.9e-06 Score=74.22 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=39.7
Q ss_pred CCCCceechh----hHHHHHHhhhccCCC--ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 186 DLDGFIGINS----RIEEIKSLLCLESHD--ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 186 ~~~~fvGR~~----el~~l~~~L~~~~~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
..+.|++... .++.+.+++...... .+.+.|+|++|+|||+||..++..........+++.
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4456776553 344455555432221 268899999999999999999988765444444443
No 78
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.96 E-value=1.2e-05 Score=63.12 Aligned_cols=72 Identities=10% Similarity=0.063 Sum_probs=53.6
Q ss_pred CcccEEEcccccccccchHHHHHHHHHhcCcceeeccccccCCCchhHHHHHHHhhcceEEEEecCCcccchhhHHHHHH
Q 042739 14 NKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIETTDISIIIFSKGYASSKWCLNELVK 93 (505)
Q Consensus 14 ~~~dvFisy~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~~~~s~~~~~El~~ 93 (505)
.+|.+||||+.+| -.+.|...|...|+... | +.|+.|+++|++.++....|+||..|+..
T Consensus 3 ~~~~lFISh~~~d----~~~~L~~~l~~~~f~~~-~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 3 AEIRLYITEGEVE----DYRVFLERLEQSGLEWR-P---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCEEEEECCCCSH----HHHHHHHHHHHHCSCEE-E---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred ceEEEEEecccHh----HHHHHHHHHhCCCCeee-c---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 4799999999998 34455555544455332 2 67899999999999999999999999776
Q ss_pred HHHhhhhCCCeEEEEE
Q 042739 94 TLDCKRTNGQIVIPVF 109 (505)
Q Consensus 94 ~~~~~~~~~~~v~pv~ 109 (505)
+. +.|.+|+=|.
T Consensus 63 A~----~~gkpIigV~ 74 (111)
T 1eiw_A 63 AR----KSSKPIITVR 74 (111)
T ss_dssp HT----TTTCCEEEEC
T ss_pred HH----HcCCCEEEEE
Confidence 55 3455566654
No 79
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.93 E-value=5.4e-05 Score=76.20 Aligned_cols=173 Identities=16% Similarity=0.179 Sum_probs=94.4
Q ss_pred CCCceechhhHHHHHHhhhc--c--------CCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeeccccccc-c
Q 042739 187 LDGFIGINSRIEEIKSLLCL--E--------SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNK-L 255 (505)
Q Consensus 187 ~~~fvGR~~el~~l~~~L~~--~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~ 255 (505)
...++|.+..++++.+.... . ..-.+-+.|+|++|+|||+||+.++......| +..+....... .
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f----~~is~~~~~~~~~ 90 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF----FHISGSDFVELFV 90 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE----EEEEGGGTTTCCT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe----eeCCHHHHHHHHh
Confidence 34588988887777765431 0 11134588999999999999999998764322 12211111110 0
Q ss_pred cHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCCCH----------------HHHHHHhcCcCCC--
Q 042739 256 GVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHDEF----------------TQLESLAGVIDRF-- 317 (505)
Q Consensus 256 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~~l~~~l~~~-- 317 (505)
+.. .. .....+.......+.+|+||+++ .. ..+..++..+...
T Consensus 91 g~~---~~---------------~~r~lf~~A~~~~p~ILfIDEid-~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 91 GVG---AA---------------RVRDLFAQAKAHAPCIVFIDEID-AVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp THH---HH---------------HHHHHHHHHHHTCSEEEEEETGG-GTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred ccc---HH---------------HHHHHHHHHHhcCCCEEEEechh-hhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 000 00 00122233334568999999993 21 1233333322211
Q ss_pred CCCCEEEEEeCcchhhc-c-c---CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCh
Q 042739 318 SPGSRIIITTRDKRVLD-K-C---EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNP 385 (505)
Q Consensus 318 ~~~~~iliTsR~~~~~~-~-~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (505)
..+..||.||.....+. . . .....+.++..+.++-.+++..++......... ....+++.+.|+.
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 23556666665543221 1 1 233478899999888888887766332211111 1445788888887
No 80
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=0.00011 Score=71.85 Aligned_cols=173 Identities=19% Similarity=0.211 Sum_probs=94.9
Q ss_pred CCCceechhhHHHHHHhhhc-----------cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccc-c
Q 042739 187 LDGFIGINSRIEEIKSLLCL-----------ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESN-K 254 (505)
Q Consensus 187 ~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~ 254 (505)
-..+.|-+...++|.+.+.. +-..++-|.++||+|.|||.||+.++......|- ......... .
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi----~v~~s~l~sk~ 256 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL----RIVGSELIQKY 256 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE----EEESGGGCCSS
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE----EEEHHHhhhcc
Confidence 34578899888888876531 1233577999999999999999999998765432 221111111 1
Q ss_pred c-cHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCC------------C---HHHHHHHhcCcCCC-
Q 042739 255 L-GVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHD------------E---FTQLESLAGVIDRF- 317 (505)
Q Consensus 255 ~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~------------~---~~~~~~l~~~l~~~- 317 (505)
. .....++.++. ..-...+++|+||+++. + ...+..++..+...
T Consensus 257 vGesek~ir~lF~-------------------~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 257 LGDGPRLCRQIFK-------------------VAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp SSHHHHHHHHHHH-------------------HHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred CchHHHHHHHHHH-------------------HHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 1 11111222211 11234689999999830 0 11222333222211
Q ss_pred -CCCCEEEEEeCcchhhc-cc----CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCh
Q 042739 318 -SPGSRIIITTRDKRVLD-KC----EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNP 385 (505)
Q Consensus 318 -~~~~~iliTsR~~~~~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (505)
..+..||.||-....+. .+ .....+.++..+.++-.++|..++........ -....|++.+.|+-
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~d---vdl~~LA~~T~GfS 388 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSED---VNLETLVTTKDDLS 388 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSC---CCHHHHHHHCCSCC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCc---CCHHHHHHhCCCCC
Confidence 23445566665443221 11 22346888888988888888777633221111 01456777777763
No 81
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.84 E-value=7e-05 Score=80.81 Aligned_cols=149 Identities=14% Similarity=0.190 Sum_probs=84.0
Q ss_pred CCceechhhHHHHHHhhhccC-------CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHH
Q 042739 188 DGFIGINSRIEEIKSLLCLES-------HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRV 260 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 260 (505)
..++|.+..++.+...+.... .....+.++|++|+|||+||+.+++.........+.+. +..........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 358999999988888776322 11236899999999999999999988633222222332 22222211100
Q ss_pred HHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCC-CCHHHHHHHhcCcCC-----------CCCCCEEEEEeC
Q 042739 261 RDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVH-DEFTQLESLAGVIDR-----------FSPGSRIIITTR 328 (505)
Q Consensus 261 ~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~l~~~l~~-----------~~~~~~iliTsR 328 (505)
.......++. ....+|+||+++ ...+....|...+.. ...+..||+||.
T Consensus 568 ----------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 568 ----------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp -------------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ----------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 0011222222 223489999995 334444444433321 123567888886
Q ss_pred cc-----------------hhhcccCCCcEEEcCCCCHhHHHHHHHHhh
Q 042739 329 DK-----------------RVLDKCEVSNIFEVKGLEHNKAFELFCRKA 360 (505)
Q Consensus 329 ~~-----------------~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 360 (505)
.. ..... ....+.+++|+.++..+++...+
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~R--l~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINR--IDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTT--SSEEEECC--CHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhh--CCeEEecCCCCHHHHHHHHHHHH
Confidence 31 11112 23578999999998888886654
No 82
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.83 E-value=5e-05 Score=80.92 Aligned_cols=173 Identities=16% Similarity=0.193 Sum_probs=96.5
Q ss_pred CCceechhhHHHHHHhhhc-----------cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccc-cccc
Q 042739 188 DGFIGINSRIEEIKSLLCL-----------ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREE-SNKL 255 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~-~~~~ 255 (505)
..+.|-+..+++|.+.+.. +-..++-|.++|++|+|||+||+.++......| +..+.... +...
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~----~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKLA 279 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE----EEEEHHHHHSSCT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE----EEEEhHHhhcccc
Confidence 4578899888888886531 112367899999999999999999998865432 22211111 0000
Q ss_pred -cHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCC------------CHHHHHHHhcCcCCC--CCC
Q 042739 256 -GVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHD------------EFTQLESLAGVIDRF--SPG 320 (505)
Q Consensus 256 -~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~------------~~~~~~~l~~~l~~~--~~~ 320 (505)
.....+ ...+.......+++|+||+++. .......++..+... ..+
T Consensus 280 gese~~l-------------------r~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~ 340 (806)
T 3cf2_A 280 GESESNL-------------------RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp THHHHHH-------------------HHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGC
T ss_pred hHHHHHH-------------------HHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCC
Confidence 001111 1222233346789999999930 011223333322211 223
Q ss_pred CEEEEEeCcchhh-ccc----CCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCChH
Q 042739 321 SRIIITTRDKRVL-DKC----EVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNPL 386 (505)
Q Consensus 321 ~~iliTsR~~~~~-~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 386 (505)
..||.||.....+ ..+ .....++++..+.++-.+++..+..+..... ......|++.+.|+--
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~---dvdl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD---DVDLEQVANETHGHVG 408 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECT---TCCHHHHHHHCCSCCH
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCc---ccCHHHHHHhcCCCCH
Confidence 4455555543221 111 2446799999999998898887663221111 1124567888888743
No 83
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.81 E-value=1.3e-05 Score=67.54 Aligned_cols=28 Identities=21% Similarity=0.468 Sum_probs=24.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
....++|+|+.|+|||+|++.++.....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3568999999999999999999987654
No 84
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.63 E-value=0.00018 Score=70.68 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...+.|+|++|+|||+||+.+++.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999998874
No 85
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.62 E-value=0.00062 Score=62.76 Aligned_cols=52 Identities=23% Similarity=0.318 Sum_probs=35.6
Q ss_pred CCCCCceechhhHHHHHHhhhc--c--------CCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCL--E--------SHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~--~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...+.++|.+....++.+.... . -.-.+-+.|+|++|+|||||++.++....
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3445678888776666554321 0 01122389999999999999999998764
No 86
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.62 E-value=0.00035 Score=67.24 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=39.0
Q ss_pred CCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 188 DGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
..++|++..++.+...+..+ +.+.|+|++|+|||+||+.+++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 45899999999998887642 368899999999999999999876543
No 87
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.62 E-value=0.00013 Score=68.96 Aligned_cols=28 Identities=36% Similarity=0.657 Sum_probs=24.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
.++.+.|+|++|+|||+||+.+++.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3568889999999999999999998743
No 88
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.60 E-value=0.00052 Score=64.25 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=37.2
Q ss_pred CCCCCceechhhHHHHHHhhhcc-C---------CCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLE-S---------HDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~-~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...+.++|.+....++.+....- . .-.+-+.|+|++|+|||||++.++....
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 44567899988777776654310 0 1122389999999999999999998764
No 89
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.57 E-value=0.0017 Score=65.77 Aligned_cols=176 Identities=14% Similarity=0.147 Sum_probs=91.7
Q ss_pred CCCCCceechhhHHHHHHhhhc--cC--------CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeeccccccc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCL--ES--------HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNK 254 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~--~~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 254 (505)
.....++|.+....++.+.... .. .-.+-+.|+|++|+|||+||+.++...... .+.+. .......
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~-g~~~~~~ 103 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFVEM 103 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEE-GGGGTSS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe-hhHHHHh
Confidence 4456789999887777665431 10 112348999999999999999999876422 12222 2111110
Q ss_pred ccHHHHHHHHHHHHhCCCCccCCCCchHHHHhcc-CCCeEEEEEeCCCC------------CH---HHHHHHhcCcCCC-
Q 042739 255 LGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGL-QRMKVLIVLDDVHD------------EF---TQLESLAGVIDRF- 317 (505)
Q Consensus 255 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~------------~~---~~~~~l~~~l~~~- 317 (505)
. .......+.. +.+.. ...+.++++|+++. .. ..+..++..+...
T Consensus 104 ~--~g~~~~~v~~----------------lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 104 F--VGVGAARVRD----------------LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp C--TTHHHHHHHH----------------HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred h--hhhHHHHHHH----------------HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 0 0000011111 11111 12468999999931 00 1223333333211
Q ss_pred -CCCCEEEEEeCcchhhc-----ccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCCh
Q 042739 318 -SPGSRIIITTRDKRVLD-----KCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGNP 385 (505)
Q Consensus 318 -~~~~~iliTsR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 385 (505)
.....++.||.....+. .......+.++..+.++-.+++..++........ .....++..+.|+.
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d---v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS---STTHHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH---HHHHHHHHhcCCCC
Confidence 12334444555443322 1123457899999999888888766532211111 11445777788876
No 90
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.50 E-value=0.00042 Score=70.21 Aligned_cols=45 Identities=20% Similarity=0.107 Sum_probs=37.7
Q ss_pred CceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 189 GFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 189 ~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
.++|++..++.+...+..+ ..+.|+|++|+|||+||+.++.....
T Consensus 23 ~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred hhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHhh
Confidence 4899999999888877543 37889999999999999999987643
No 91
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.49 E-value=0.00038 Score=75.17 Aligned_cols=151 Identities=15% Similarity=0.216 Sum_probs=84.1
Q ss_pred CCCceechhhHHHHHHhhhc-----------cCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccc-c
Q 042739 187 LDGFIGINSRIEEIKSLLCL-----------ESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESN-K 254 (505)
Q Consensus 187 ~~~fvGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~ 254 (505)
...++|.+..+++|.+++.. .-.....+.|+|++|+|||+||+.++......| +.+. ...... .
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l~~~~ 278 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSKL 278 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHSSSS
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHhhhhh
Confidence 35689999999999988753 123356799999999999999999998764432 2222 111100 0
Q ss_pred -ccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCCeEEEEEeCCCC--------C----HHHHHHHhcCcCCC--CC
Q 042739 255 -LGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRMKVLIVLDDVHD--------E----FTQLESLAGVIDRF--SP 319 (505)
Q Consensus 255 -~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--------~----~~~~~~l~~~l~~~--~~ 319 (505)
........ ..+.......+.++++|+++. . ......+...+... ..
T Consensus 279 ~g~~~~~l~-------------------~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~ 339 (806)
T 1ypw_A 279 AGESESNLR-------------------KAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp TTHHHHHHH-------------------HHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTS
T ss_pred hhhHHHHHH-------------------HHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccc
Confidence 00001111 111122223578999999930 0 11122222222111 23
Q ss_pred CCEEEEEeCcchhhc-cc----CCCcEEEcCCCCHhHHHHHHHHhh
Q 042739 320 GSRIIITTRDKRVLD-KC----EVSNIFEVKGLEHNKAFELFCRKA 360 (505)
Q Consensus 320 ~~~iliTsR~~~~~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~ 360 (505)
+..+|.||.....+. .+ .....+.+...+.++-.+++...+
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 455565665432211 11 223567888899999999987765
No 92
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.48 E-value=0.00018 Score=77.73 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=38.1
Q ss_pred CCceechhhHHHHHHhhhccC-------CCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 188 DGFIGINSRIEEIKSLLCLES-------HDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..++|.+..++.+...+.... .....+.++|++|+|||+||+.+++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 358899998888887765321 1234789999999999999999998873
No 93
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.39 E-value=0.00078 Score=69.38 Aligned_cols=49 Identities=27% Similarity=0.401 Sum_probs=35.7
Q ss_pred ceechhhHHHHHHhhhc----cCCCceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 190 FIGINSRIEEIKSLLCL----ESHDARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 190 fvGR~~el~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.+|-+.....+.+.+.. .......+.|+|++|+|||+||+.++......
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 67777776666554431 11235689999999999999999999887543
No 94
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.39 E-value=0.00027 Score=77.14 Aligned_cols=49 Identities=16% Similarity=0.235 Sum_probs=38.5
Q ss_pred CceechhhHHHHHHhhhccC-------CCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 189 GFIGINSRIEEIKSLLCLES-------HDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 189 ~fvGR~~el~~l~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
.++|.+..++.+...+.... .....+.|+|++|+|||+||+.+++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47899999988888775321 11358899999999999999999987643
No 95
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.36 E-value=0.0027 Score=61.36 Aligned_cols=157 Identities=11% Similarity=-0.015 Sum_probs=97.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcc-cccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhcc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISR-YFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGL 288 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l 288 (505)
-.++..++|+.|.||++.+..+...+.. .|.....+. .. ...++..+...+-.. -+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~-------------------pl 73 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-ID---PNTDWNAIFSLCQAM-------------------SL 73 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CC---TTCCHHHHHHHHHHH-------------------HH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ec---CCCCHHHHHHHhcCc-------------------CC
Confidence 4668999999999999999999887542 232111111 11 123333333222111 11
Q ss_pred CCCeEEEEEeCCCC--CHHHHHHHhcCcCCCCCCCEEEEEeCc-------chhhcc-cCCCcEEEcCCCCHhHHHHHHHH
Q 042739 289 QRMKVLIVLDDVHD--EFTQLESLAGVIDRFSPGSRIIITTRD-------KRVLDK-CEVSNIFEVKGLEHNKAFELFCR 358 (505)
Q Consensus 289 ~~~~~LlVlDdv~~--~~~~~~~l~~~l~~~~~~~~iliTsR~-------~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~ 358 (505)
-+.+-++|+|+++. +....+.+...+...++++.+|+++.. ..+... ......++..+++.++..+.+.+
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 24466889999853 345666676666655667777776643 122332 23456899999999999998887
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCChHHHHHH
Q 042739 359 KAFGQNNRSHDLYQLSQRVVCYADGNPLALEVL 391 (505)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 391 (505)
.+...+ -....+.+..+++.++|....+...
T Consensus 154 ~~~~~g--~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 154 RAKQLN--LELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHTT--CEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHcC--CCCCHHHHHHHHHHhchHHHHHHHH
Confidence 763221 1233567888999999999877653
No 96
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.33 E-value=0.00079 Score=63.99 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=34.7
Q ss_pred hhHHHHHHhhhccCC-CceEEEEeccCcchHHHHHHHHHhhhc-ccccceEEEe
Q 042739 195 SRIEEIKSLLCLESH-DARIVGIWGMGGIGKTTIASVVFHQIS-RYFQGNCFMA 246 (505)
Q Consensus 195 ~el~~l~~~L~~~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~ 246 (505)
..++.+.+++..... ....+.|+|++|+|||+||..+++... .....+.++.
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344455556653222 256888999999999999999999876 4433344443
No 97
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.17 E-value=0.004 Score=58.02 Aligned_cols=124 Identities=17% Similarity=0.154 Sum_probs=64.7
Q ss_pred EEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhcc-CCCe
Q 042739 214 VGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGL-QRMK 292 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l-~~~~ 292 (505)
++|+|++|+|||||++.++...... .+.+. ........ ... ....+.. +.+.. ...+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~---~i~i~-g~~l~~~~-~~~-~~~~i~~----------------vf~~a~~~~p 104 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLN---FISVK-GPELLNMY-VGE-SERAVRQ----------------VFQRAKNSAP 104 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCE---EEEEE-TTTTCSST-THH-HHHHHHH----------------HHHHHHHTCS
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCC---EEEEE-cHHHHhhh-hhH-HHHHHHH----------------HHHHHHhcCC
Confidence 8999999999999999999876432 22222 11111100 000 0011111 11111 2347
Q ss_pred EEEEEeCCCCCH-------------HHHHHHhcCcCCC--CCCCEEEEEeCcchhhcc-----cCCCcEEEcCCCCHhHH
Q 042739 293 VLIVLDDVHDEF-------------TQLESLAGVIDRF--SPGSRIIITTRDKRVLDK-----CEVSNIFEVKGLEHNKA 352 (505)
Q Consensus 293 ~LlVlDdv~~~~-------------~~~~~l~~~l~~~--~~~~~iliTsR~~~~~~~-----~~~~~~~~l~~L~~~ea 352 (505)
.++++|++. .. .....++..+... ....-++.+|.....+.. ......+.++..+.++-
T Consensus 105 ~i~~~Deid-~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r 183 (274)
T 2x8a_A 105 CVIFFDEVD-ALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADR 183 (274)
T ss_dssp EEEEEETCT-TTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHH
T ss_pred CeEeeehhh-hhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHH
Confidence 889999993 21 1112222222111 122334455555433221 13456788999999999
Q ss_pred HHHHHHhh
Q 042739 353 FELFCRKA 360 (505)
Q Consensus 353 ~~L~~~~~ 360 (505)
.+++....
T Consensus 184 ~~il~~~~ 191 (274)
T 2x8a_A 184 LAILKTIT 191 (274)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998765
No 98
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.99 E-value=0.0018 Score=57.96 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=22.5
Q ss_pred CCceEEEEeccCcchHHHHHHHHHh
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFH 233 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~ 233 (505)
....++.|.|++|+|||||+..++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456999999999999999999998
No 99
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.85 E-value=0.00055 Score=61.47 Aligned_cols=111 Identities=17% Similarity=0.020 Sum_probs=57.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCC--ccCCCCc-hHHHHh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENL--KVGTLTI-PQNIKK 286 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~~~~~-~~~l~~ 286 (505)
...++.|+|+.|+||||++.+++.+...+...+..+...- ... +. .++...+..... ....... .+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~--d~r-~~----~~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI--DTR-SI----RNIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC--CGG-GC----SSCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc--Cch-HH----HHHHHhcCCCccccccCCHHHHHHHHHH
Confidence 3578999999999999999999988765543333332111 100 10 011111111111 1111111 333343
Q ss_pred ccCC-CeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcc
Q 042739 287 GLQR-MKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDK 330 (505)
Q Consensus 287 ~l~~-~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~ 330 (505)
.+.+ +.-+||+|.++ -+.++++.+.. +. ..+..||+|.+..
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~--~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANI-LA--ENGFVVIISGLDK 126 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHH-HH--HTTCEEEEECCSB
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHH-HH--hCCCeEEEEeccc
Confidence 3333 35599999996 22344444432 21 1378899999854
No 100
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.85 E-value=0.0011 Score=70.59 Aligned_cols=171 Identities=15% Similarity=0.196 Sum_probs=76.9
Q ss_pred CCceechhhHHHHHHhhhcc-----------CCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeeccccccccc
Q 042739 188 DGFIGINSRIEEIKSLLCLE-----------SHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLG 256 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 256 (505)
....|.+...++|.+.+... ....+-+.++|++|.|||.||+.++......| +. ...
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f-----~~----v~~--- 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF-----IS----IKG--- 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE-----EE----CCH---
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce-----EE----ecc---
Confidence 45678888888877765321 12245688999999999999999999865432 22 110
Q ss_pred HHHHHHHHHHHHhCCCCccCCCCchHHHHh-ccCCCeEEEEEeCCCCCH----------------HHHHHHhcCcCCCCC
Q 042739 257 VIRVRDEVISQVLGENLKVGTLTIPQNIKK-GLQRMKVLIVLDDVHDEF----------------TQLESLAGVIDRFSP 319 (505)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~----------------~~~~~l~~~l~~~~~ 319 (505)
.+++....++ .......+.+ .-...+++|+||+++ .. .....|+..+.....
T Consensus 545 -----~~l~s~~vGe-----se~~vr~lF~~Ar~~~P~IifiDEiD-sl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 545 -----PELLTMWFGE-----SEANVREIFDKARQAAPCVLFFDELD-SIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp -----HHHHTTTCSS-----CHHHHHHHHHHHHTTCSEEEECSCGG-GCC--------------CHHHHHHHHHHHSSCS
T ss_pred -----chhhccccch-----HHHHHHHHHHHHHHcCCceeechhhh-HHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 1111111111 0111222222 224578999999993 10 123334433332222
Q ss_pred --CCEEEEEeCcchh-----hcccCCCcEEEcCCCCHhHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcCC
Q 042739 320 --GSRIIITTRDKRV-----LDKCEVSNIFEVKGLEHNKAFELFCRKAFGQNNRSHDLYQLSQRVVCYADGN 384 (505)
Q Consensus 320 --~~~iliTsR~~~~-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 384 (505)
+..||.||-.... +........+.++..+.++-.++|..+..+..... + -....|++.+.|+
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~-~--~dl~~la~~t~g~ 682 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK-D--VDLEFLAKMTNGF 682 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CC-C---------------
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCC-C--CCHHHHHHhCCCC
Confidence 2233334433221 11113456788887777777777766552221111 1 1134566666665
No 101
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=96.83 E-value=0.0075 Score=50.81 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=74.1
Q ss_pred cccEEEcc--------------cccccccchHHHHHHHHHhcCcceeeccccc----cC----CCchhHHHHHHHhhcce
Q 042739 15 KYEVFLSF--------------RGEDTRNGFTSHLAAALHRKQIQFFIDDEEL----KK----GDEISPALSNAIETTDI 72 (505)
Q Consensus 15 ~~dvFisy--------------~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~----~~----g~~~~~~i~~~i~~s~~ 72 (505)
+-.+||+| +.+|.. ....|...-.....-.|.|..+. .- -+.|-..+.+.|..|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~Di~--yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHDFV--YYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTTHH--HHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccchHH--HHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 45688888 555644 77777777777667888886443 22 23577889999999999
Q ss_pred EEEEecCCcccchhhHHHHHHHHHhhhhCCCeEEEEEeecC-Cccccccccch
Q 042739 73 SIIIFSKGYASSKWCLNELVKTLDCKRTNGQIVIPVFYQID-PSDVRKQSESL 124 (505)
Q Consensus 73 ~i~v~s~~~~~s~~~~~El~~~~~~~~~~~~~v~pv~~~~~-p~~vr~~~~~~ 124 (505)
+|+++|++...|.|..+|+..++. ..+.+||-|..+-+ .+++.+..|++
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~~ 132 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGNF 132 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSCB
T ss_pred EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhccccc
Confidence 999999999999999999877762 34556777764422 23444434443
No 102
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.78 E-value=0.00071 Score=59.01 Aligned_cols=109 Identities=14% Similarity=0.085 Sum_probs=52.9
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccCCC
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQRM 291 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~~ 291 (505)
.++.|+|+.|+||||++.+.+.+.........++... .....+.. .+........... .......+.+.+.++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~--~d~r~~~~----~i~s~~g~~~~~~-~~~~~~~~~~~~~~~ 76 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK--IDSRYHST----MIVSHSGNGVEAH-VIERPEEMRKYIEED 76 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-------CCC----EECC----CEECE-EESSGGGGGGGCCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec--cccccCcc----cEEecCCCceeeE-EECCHHHHHHHhcCC
Confidence 4788999999999999988887754322222222211 00000000 0000000000000 001123334444455
Q ss_pred eEEEEEeCCCC-CHHHHHHHhcCcCCCCCCCEEEEEeCcc
Q 042739 292 KVLIVLDDVHD-EFTQLESLAGVIDRFSPGSRIIITTRDK 330 (505)
Q Consensus 292 ~~LlVlDdv~~-~~~~~~~l~~~l~~~~~~~~iliTsR~~ 330 (505)
.-+|++|.++. +.++.+.+..... .+..|++|.+..
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~---~~~~Vi~~Gl~~ 113 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLD---RGIDVFCAGLDL 113 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEEESB
T ss_pred CCEEEEECcccCCHHHHHHHHHHHH---CCCCEEEEeecc
Confidence 67999999962 2334444433222 377899988754
No 103
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.73 E-value=0.00097 Score=62.83 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.+++.|+|++|+|||+||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 467889999999999999999986
No 104
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.73 E-value=0.0013 Score=58.50 Aligned_cols=90 Identities=19% Similarity=0.154 Sum_probs=47.5
Q ss_pred EEEEeccCcchHHHHHHHHHhhhcccccceEEEeec---cc-ccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhcc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANV---RE-ESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGL 288 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~---~~-~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l 288 (505)
+|.|.|++|+||||.|..++.++. ...+..- +. ......+....+..+.. ..-.++.-....+.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~~~istGdllR~~i~~~t~lg~~~~~~~~~----G~lvpd~iv~~lv~~~l 72 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----FVHISTGDILREAVQKGTPLGKKAKEYMER----GELVPDDLIIALIEEVF 72 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHHHHHHHHHTCHHHHHHHHHHHH----TCCCCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CeEEcHHHHHHHHHHhcChhhhhHHHHHhc----CCcCCHHHHHHHHHHhh
Confidence 477899999999999999998742 1222200 00 00011111111222111 11111111156667777
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHhc
Q 042739 289 QRMKVLIVLDDVHDEFTQLESLAG 312 (505)
Q Consensus 289 ~~~~~LlVlDdv~~~~~~~~~l~~ 312 (505)
..... +|||++-.+..+.+.|..
T Consensus 73 ~~~~~-~ilDGfPRt~~Qa~~l~~ 95 (206)
T 3sr0_A 73 PKHGN-VIFDGFPRTVKQAEALDE 95 (206)
T ss_dssp CSSSC-EEEESCCCSHHHHHHHHH
T ss_pred ccCCc-eEecCCchhHHHHHHHHh
Confidence 65554 789999767777766643
No 105
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.73 E-value=0.0025 Score=61.45 Aligned_cols=49 Identities=24% Similarity=0.202 Sum_probs=34.5
Q ss_pred HHHHHhhh-ccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 198 EEIKSLLC-LESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 198 ~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
..|...|. .+-....++.|.|++|+||||||.+++......-..++|+.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 44555554 22234679999999999999999999987654433455654
No 106
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.71 E-value=0.0039 Score=57.17 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=30.5
Q ss_pred hHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 196 RIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 196 el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
-...+..+|....+....+.|+|++|.|||.||..+++.+
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3455777776432335679999999999999999999864
No 107
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.61 E-value=0.024 Score=55.17 Aligned_cols=49 Identities=29% Similarity=0.343 Sum_probs=36.3
Q ss_pred CCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 188 DGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..++|....+.++...+..-......+.|+|.+|.||+.+|+.+...-.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~ 177 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSG 177 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcc
Confidence 4588988888887776653223334577999999999999998876543
No 108
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.61 E-value=0.0028 Score=57.89 Aligned_cols=42 Identities=19% Similarity=0.066 Sum_probs=29.8
Q ss_pred hhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 194 NSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 194 ~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+.++...+.........|+|.|++|+||||+|+.++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 12 IDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 334444444443333456789999999999999999998775
No 109
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.59 E-value=0.0058 Score=57.36 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=27.0
Q ss_pred EEEEeccCcchHHHHHHHHHhhhcccc--cceEEEe
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQISRYF--QGNCFMA 246 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~ 246 (505)
++.|.|++|+|||||+.+++......+ ..++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 789999999999999999998766542 3455554
No 110
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.50 E-value=0.0031 Score=55.73 Aligned_cols=44 Identities=23% Similarity=0.341 Sum_probs=33.5
Q ss_pred chhhHHHHHHhhhcc-CCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 193 INSRIEEIKSLLCLE-SHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 193 R~~el~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
|++.++.|.+.+... .....+++|.|+.|+|||||++.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 556667776666532 23467999999999999999999988653
No 111
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.50 E-value=0.0014 Score=56.68 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.8
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.+|.|+|++|+||||+++.++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998864
No 112
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.48 E-value=0.0024 Score=56.86 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=29.1
Q ss_pred HHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 197 IEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
+++|.+.+........+++|.|++|+|||||++.++..+.
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3344444432224567999999999999999999988765
No 113
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.40 E-value=0.0024 Score=62.23 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=35.3
Q ss_pred ceechhhHHHHHHhhh-------------ccCCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 190 FIGINSRIEEIKSLLC-------------LESHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 190 fvGR~~el~~l~~~L~-------------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
++|.+..++.+...+. ......+.+.|+|++|+|||++|+.++....
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5788877777777662 0111345788999999999999999998873
No 114
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.31 E-value=0.0015 Score=56.79 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=23.6
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYF 239 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (505)
|.|+|+||+|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5688999999999999999988765444
No 115
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.27 E-value=0.0053 Score=53.45 Aligned_cols=118 Identities=18% Similarity=0.137 Sum_probs=57.6
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHH--hCCCCccCCC---------Cc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQV--LGENLKVGTL---------TI 280 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~~~---------~~ 280 (505)
..|.|++..|.||||+|.-.+-+...+--.+.++.-.... ...+...++..+--.+ .+........ ..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 3566666677999999999998865554444444322211 1223333333220000 0000000000 00
Q ss_pred -hHHHHhccCC-CeEEEEEeCCC----CCHHHHHHHhcCcCCCCCCCEEEEEeCcc
Q 042739 281 -PQNIKKGLQR-MKVLIVLDDVH----DEFTQLESLAGVIDRFSPGSRIIITTRDK 330 (505)
Q Consensus 281 -~~~l~~~l~~-~~~LlVlDdv~----~~~~~~~~l~~~l~~~~~~~~iliTsR~~ 330 (505)
....++.+.+ +-=|||||++- ...-..+.+...+........||+|+|..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 2334444543 34599999981 01111222333333345678999999986
No 116
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.24 E-value=0.0024 Score=54.63 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=22.3
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.+|+|.|++|+||||+++.++.++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999998764
No 117
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.21 E-value=0.014 Score=56.22 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=27.7
Q ss_pred HHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 200 IKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 200 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
|..+|..+-....++.|+|++|+|||+||.+++...
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 444453333456799999999999999999999874
No 118
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.16 E-value=0.0052 Score=57.65 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=25.6
Q ss_pred CCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 208 SHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 208 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
.+...+|+|.|+.|+|||||++.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345789999999999999999999887654
No 119
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.15 E-value=0.0065 Score=58.94 Aligned_cols=50 Identities=24% Similarity=0.193 Sum_probs=34.4
Q ss_pred HHHHHHhhh-ccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 197 IEEIKSLLC-LESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 197 l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
...|...|. .+-....++.|.|++|+|||+||.+++.........++|+.
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 334555553 22234568999999999999999999987654434566665
No 120
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.13 E-value=0.011 Score=57.12 Aligned_cols=108 Identities=12% Similarity=0.175 Sum_probs=60.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEE-eecccccccccHHHHHHHHHHHHhCCC-CccCCCCchHHHHhcc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFM-ANVREESNKLGVIRVRDEVISQVLGEN-LKVGTLTIPQNIKKGL 288 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~~~l~~~l 288 (505)
..+++|+|+.|+|||||++.++..+.......++. .+..+...... ....... ...........+...|
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~---------~~~v~q~~~~~~~~~~~~~La~aL 193 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESK---------KCLVNQREVHRDTLGFSEALRSAL 193 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS---------SSEEEEEEBTTTBSCHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcc---------ccceeeeeeccccCCHHHHHHHHh
Confidence 34999999999999999999987765432222222 11100000000 0000000 0011111256788888
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHhcCcCCCCCCCEEEEEeCcch
Q 042739 289 QRMKVLIVLDDVHDEFTQLESLAGVIDRFSPGSRIIITTRDKR 331 (505)
Q Consensus 289 ~~~~~LlVlDdv~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~ 331 (505)
...+=+|++|.. .+.+..+.+.... ..|..+|+|+-...
T Consensus 194 ~~~PdvillDEp-~d~e~~~~~~~~~---~~G~~vl~t~H~~~ 232 (356)
T 3jvv_A 194 REDPDIILVGEM-RDLETIRLALTAA---ETGHLVFGTLHTTS 232 (356)
T ss_dssp TSCCSEEEESCC-CSHHHHHHHHHHH---HTTCEEEEEESCSS
T ss_pred hhCcCEEecCCC-CCHHHHHHHHHHH---hcCCEEEEEEccCh
Confidence 889999999999 5666655544432 24556777777653
No 121
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.08 E-value=0.0055 Score=53.66 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=30.6
Q ss_pred hHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 196 RIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 196 el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
-+..|..++.. -+..+.+.|+|++|+|||++|..+++.+..
T Consensus 44 f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 44 FLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35666666653 233457899999999999999999988643
No 122
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.06 E-value=0.013 Score=59.09 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=32.4
Q ss_pred CCCCCceechhhHHHHHH----hhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccc
Q 042739 185 TDLDGFIGINSRIEEIKS----LLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYF 239 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~----~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (505)
..|..|-+-..+.++... .+.. +.+.+.|.|++|.|||+++..++..+....
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~---~~~~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKE---KKHHVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHS---SSCEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhc---CCCEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 344455555544443333 3332 223899999999999999999998765443
No 123
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.06 E-value=0.0033 Score=54.56 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.+.|+|+|++|+||||+++.++..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998763
No 124
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.05 E-value=0.0036 Score=60.50 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=35.8
Q ss_pred CCCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 185 TDLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 185 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.....++|.+.....+...+... ....+.|+|++|+|||+||+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34456899988666554443321 223488999999999999999998764
No 125
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.04 E-value=0.017 Score=55.00 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=25.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
..++++|+|++|+||||++..++..+...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46799999999999999999999877654
No 126
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.03 E-value=0.0035 Score=55.25 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...|+|+|++|+||||+++.++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999999876
No 127
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.99 E-value=0.0038 Score=54.04 Aligned_cols=26 Identities=15% Similarity=0.409 Sum_probs=23.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.++++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999988654
No 128
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.97 E-value=0.0038 Score=53.82 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=20.6
Q ss_pred eEEEEeccCcchHHHHHHHHHh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFH 233 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~ 233 (505)
.+|.|.|++|+||||+|+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 129
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.94 E-value=0.0053 Score=53.55 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.1
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
..|+|.|++|+||||+++.++.++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998754
No 130
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.93 E-value=0.062 Score=52.60 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=35.1
Q ss_pred CceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 189 GFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 189 ~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.++|....+.++.+.+..-......|.|+|.+|+|||.+|+.+....
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred hhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhc
Confidence 47888888888877766433333345899999999999998776653
No 131
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.89 E-value=0.004 Score=55.35 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=24.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
...+++|+|++|+|||||++.++..+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 4568999999999999999999987643
No 132
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.89 E-value=0.0044 Score=53.98 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=23.8
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYF 239 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (505)
++++|.|+.|+|||||++.+...+...+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 5789999999999999999998765433
No 133
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.86 E-value=0.0044 Score=54.09 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...+++|.|++|+|||||++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3568999999999999999999876
No 134
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.86 E-value=0.0052 Score=53.63 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..+|.|.|++|+||||+++.++..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999998876
No 135
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.85 E-value=0.0051 Score=54.23 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=24.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...+++|.|++|+|||||++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998875
No 136
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.84 E-value=0.0045 Score=53.00 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=19.6
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.+|+|+|++|+||||+|+.+ ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 37899999999999999999 44
No 137
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.82 E-value=0.004 Score=53.39 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.3
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.+|+|+|++|+|||||++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998754
No 138
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.77 E-value=0.034 Score=55.00 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=25.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.+.+|.++|++|+||||++..++..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999999876554
No 139
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.76 E-value=0.0045 Score=53.48 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.+.|.|+|++|+||||+++.++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999875
No 140
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.76 E-value=0.042 Score=54.30 Aligned_cols=29 Identities=28% Similarity=0.222 Sum_probs=25.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.++++.++|++|+||||++..++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999999876554
No 141
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.74 E-value=0.011 Score=51.90 Aligned_cols=22 Identities=32% Similarity=0.284 Sum_probs=18.9
Q ss_pred EEEEeccCcchHHHHHHHHHhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
+..|+|.+|.|||++|......
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6789999999999999886544
No 142
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.73 E-value=0.0051 Score=53.57 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=23.2
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
..|+|.|++|+||||+++.++.++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999987653
No 143
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.73 E-value=0.0051 Score=56.04 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=28.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
...++.|.|++|+|||||+.+++......-..++|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3568999999999999999999877544333455554
No 144
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.72 E-value=0.0057 Score=53.61 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=23.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..++++|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999997754
No 145
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.71 E-value=0.024 Score=53.50 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=25.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
...+++|+|++|+||||++..++..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 46799999999999999999999877644
No 146
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.68 E-value=0.0043 Score=54.80 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=22.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..+|+|+|++|+||||||+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 147
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.67 E-value=0.0063 Score=55.94 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.2
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.+++|.|++|+||||||+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998753
No 148
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.66 E-value=0.0091 Score=51.84 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=24.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
...+++|.|++|+||||+++.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999988654
No 149
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.66 E-value=0.0077 Score=54.22 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=26.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEE
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFM 245 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (505)
..+++|.|++|+|||||+..++......-..+.|+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 56899999999999999999997654332234444
No 150
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.66 E-value=0.0059 Score=53.83 Aligned_cols=26 Identities=42% Similarity=0.492 Sum_probs=23.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+++|.|++|+|||||++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999998876
No 151
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.64 E-value=0.0064 Score=51.84 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..+|+|.|++|+||||+++.++.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998754
No 152
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.62 E-value=0.005 Score=54.53 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=23.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..++++|+|++|+|||||++.+...+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999998764
No 153
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.60 E-value=0.0082 Score=51.50 Aligned_cols=25 Identities=40% Similarity=0.599 Sum_probs=22.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..+++|+|++|+|||||++.++..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999998765
No 154
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.57 E-value=0.0079 Score=53.65 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=24.3
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...++|.|.|++|+||||.|..++.++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999875
No 155
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.55 E-value=0.011 Score=55.44 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...++.|+|++|+||||+|+.++.++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998875
No 156
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.55 E-value=0.0073 Score=52.71 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..+|+|.|++|+||||+|+.++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998875
No 157
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.55 E-value=0.0072 Score=52.85 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..+|+|.|++|+||||+++.++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 158
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.52 E-value=0.018 Score=54.06 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=24.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
..++++|+|++|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999987753
No 159
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.52 E-value=0.019 Score=55.55 Aligned_cols=41 Identities=27% Similarity=0.349 Sum_probs=30.2
Q ss_pred HHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 197 IEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
...+...+....++..+|+|+|.+|+|||||+..++..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 33444444333456789999999999999999999877644
No 160
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.52 E-value=0.0058 Score=52.83 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=18.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..+|+|.|++|+||||+|+.++..+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999988754
No 161
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.52 E-value=0.028 Score=53.36 Aligned_cols=38 Identities=18% Similarity=0.041 Sum_probs=29.0
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
....++.|.|.+|+|||+||.+++.....+...++|+.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 44679999999999999999999987654434455554
No 162
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.51 E-value=0.0069 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.6
Q ss_pred EEEEeccCcchHHHHHHHHHhhhc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.|+|.|++|+||||+|+.++..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998753
No 163
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.50 E-value=0.0087 Score=52.79 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=23.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+|+|.|++|+||||+++.++..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998875
No 164
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.49 E-value=0.0081 Score=52.09 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...|+|.|++|+||||+++.++..+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998865
No 165
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.49 E-value=0.016 Score=52.47 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=27.0
Q ss_pred HHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 199 EIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.|..+|..+-....++.|.|++|+|||||+..++...
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3444443222335699999999999999999999853
No 166
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.48 E-value=0.01 Score=50.50 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=24.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.++++|.|+.|+|||||+..++..+..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 5689999999999999999999887544
No 167
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.48 E-value=0.0081 Score=52.15 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=22.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...|+|+|++|+||||+++.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999887
No 168
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.47 E-value=0.0075 Score=53.23 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..+++|.|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998764
No 169
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.46 E-value=0.0078 Score=53.00 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.3
Q ss_pred EEEEeccCcchHHHHHHHHHhhhcc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
.|+|.|+.|+||||+++.++..+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5889999999999999999987653
No 170
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.46 E-value=0.0085 Score=53.13 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=24.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
...|+|.|++|+||||+++.++..+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3589999999999999999999887543
No 171
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.45 E-value=0.0061 Score=52.83 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.6
Q ss_pred EEEEeccCcchHHHHHHHHHhhhc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
+|+|+|++|+||||+|+.++..+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998753
No 172
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.44 E-value=0.012 Score=55.83 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=34.4
Q ss_pred ceechhhHHHHHHhhhcc--CCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 190 FIGINSRIEEIKSLLCLE--SHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 190 fvGR~~el~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
++|-...+..+...+... ...+.+++|.|+.|+|||||++.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456666666665555432 33467999999999999999999887664
No 173
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.42 E-value=0.0073 Score=52.95 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..+|+|.|++|+||||+|+.++..+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998763
No 174
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.42 E-value=0.047 Score=48.16 Aligned_cols=112 Identities=18% Similarity=0.106 Sum_probs=55.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHhccC
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKKGLQ 289 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~l~ 289 (505)
...+..++|+.|.||||.+...+.+...+...++.+... .....+.. .+.+.+......... .....+.+.+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~--~d~R~ge~----~i~s~~g~~~~a~~~-~~~~~~~~~~~ 99 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC--IDNRYSEE----DVVSHNGLKVKAVPV-SASKDIFKHIT 99 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------------CCEEEC-SSGGGGGGGCC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec--cCCcchHH----HHHhhcCCeeEEeec-CCHHHHHHHHh
Confidence 357889999999999999999998865543333333311 11111111 222222111111100 11123333333
Q ss_pred CCeEEEEEeCCC-CCHHHHHHHhcCcCCCCCCCEEEEEeCcch
Q 042739 290 RMKVLIVLDDVH-DEFTQLESLAGVIDRFSPGSRIIITTRDKR 331 (505)
Q Consensus 290 ~~~~LlVlDdv~-~~~~~~~~l~~~l~~~~~~~~iliTsR~~~ 331 (505)
++--+|++|.++ -+.++++.+.... ..+..||+|.++.+
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~~l~---~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQVLA---NRGYRVIVAGLDQD 139 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHHHHH---HTTCEEEEEECSBC
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHh---hCCCEEEEEecccc
Confidence 334499999986 2233444332211 24778999999653
No 175
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.41 E-value=0.0088 Score=54.89 Aligned_cols=28 Identities=14% Similarity=0.396 Sum_probs=23.9
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
....+|+|.|++|+||||+|+.++..+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3467899999999999999999988754
No 176
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.39 E-value=0.0071 Score=51.74 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.1
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..|+|+|++|+||||+|+.++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998753
No 177
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.37 E-value=0.014 Score=52.33 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+++|.|++|+|||||++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998754
No 178
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.36 E-value=0.02 Score=49.95 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=22.2
Q ss_pred EEEEeccCcchHHHHHHHHHhhhcc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
.|+|.|+.|+||||+++.+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987643
No 179
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.36 E-value=0.011 Score=52.63 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=24.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
..+|+|.|++|+||||+++.++..+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999988654
No 180
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.35 E-value=0.012 Score=56.86 Aligned_cols=49 Identities=27% Similarity=0.224 Sum_probs=34.1
Q ss_pred HHHHHhhh-ccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 198 EEIKSLLC-LESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 198 ~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
..|..+|. .+-...+++.|.|++|+||||||.+++......-..++|+.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34444453 22234679999999999999999999987654434556665
No 181
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.34 E-value=0.041 Score=53.04 Aligned_cols=30 Identities=17% Similarity=0.035 Sum_probs=24.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYF 239 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (505)
....++|+|++|+|||+|+..+++.+...+
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 356889999999999999999988765443
No 182
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.34 E-value=0.0089 Score=54.51 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=22.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...++.|.|.+|+|||+||.+++...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999988764
No 183
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.33 E-value=0.017 Score=57.45 Aligned_cols=30 Identities=30% Similarity=0.643 Sum_probs=24.4
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccccc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYFQG 241 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 241 (505)
+.++|+|++|+|||+|+..++.....++..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~ 181 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGG 181 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCc
Confidence 368899999999999999999876554433
No 184
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.32 E-value=0.011 Score=52.18 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=22.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...|+|+|++|+||||+|+.++..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999875
No 185
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.32 E-value=0.012 Score=56.84 Aligned_cols=49 Identities=20% Similarity=0.167 Sum_probs=34.0
Q ss_pred HHHHHhhh-ccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 198 EEIKSLLC-LESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 198 ~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
..|...|. .+-...+++.|.|++|+||||||.+++......-..++|+.
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34445553 22234679999999999999999999987654434455554
No 186
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.32 E-value=0.013 Score=55.68 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=27.6
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhcccccceE
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNC 243 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 243 (505)
++.++|+|+|-||+||||.+..++.-+......+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVl 80 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVL 80 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEE
Confidence 45799999999999999999999887765433333
No 187
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.30 E-value=0.0098 Score=53.25 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=22.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...|+|.|++|+||||+++.++..+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999998763
No 188
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.29 E-value=0.0093 Score=52.64 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..+++|+|++|+|||||++.++...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998876
No 189
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.28 E-value=0.0096 Score=51.83 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.7
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.+++|.|++|+|||||++.++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 57899999999999999999863
No 190
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.26 E-value=0.0098 Score=51.77 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=23.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..+|+|.|++|+||||+|+.++..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988753
No 191
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.24 E-value=0.019 Score=52.68 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=23.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.+.++.|.|++|+||||+|+.++..+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999998764
No 192
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.24 E-value=0.021 Score=54.43 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=25.1
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
..+.+++|+|+.|+|||||+..++..+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34789999999999999999999987654
No 193
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.22 E-value=0.011 Score=54.59 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..+|+|+|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 194
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.22 E-value=0.011 Score=52.47 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...+++|.|+.|+|||||++.++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988654
No 195
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.21 E-value=0.16 Score=47.19 Aligned_cols=48 Identities=10% Similarity=0.100 Sum_probs=30.7
Q ss_pred chhHHHHHHHhhcceEEEEecCCcccchhhHHHHHHHHHhhhhCCCeEEEEEee
Q 042739 58 EISPALSNAIETTDISIIIFSKGYASSKWCLNELVKTLDCKRTNGQIVIPVFYQ 111 (505)
Q Consensus 58 ~~~~~i~~~i~~s~~~i~v~s~~~~~s~~~~~El~~~~~~~~~~~~~v~pv~~~ 111 (505)
....++.+.+++++++|.|+...--.+..+ .++...+ .+..++-|+-+
T Consensus 12 ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l-----~~kp~ilVlNK 59 (282)
T 1puj_A 12 KARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL-----KNKPRIMLLNK 59 (282)
T ss_dssp HHHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC-----SSSCEEEEEEC
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH-----CCCCEEEEEEC
Confidence 355788899999999999998765444444 2344333 34445555544
No 196
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.20 E-value=0.0091 Score=51.14 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=19.8
Q ss_pred CceEEEEeccCcchHHHHHHHHH
Q 042739 210 DARIVGIWGMGGIGKTTIASVVF 232 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~ 232 (505)
...+++|+|++|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 35689999999999999999643
No 197
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.19 E-value=0.0099 Score=52.73 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=23.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
..+|+|.|++|+||||+++.++..+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999987643
No 198
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.19 E-value=0.011 Score=50.18 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.5
Q ss_pred EEEEeccCcchHHHHHHHHHhhhc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.|+|.|++|+||||+|+.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998753
No 199
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.14 E-value=0.011 Score=50.97 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.1
Q ss_pred EEEEeccCcchHHHHHHHHHhhhc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999987653
No 200
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.14 E-value=0.011 Score=53.20 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.8
Q ss_pred eEEEEeccCcchHHHHHHHHHhhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.+|+|+|++|+||||+++.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
No 201
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.14 E-value=0.012 Score=56.25 Aligned_cols=31 Identities=29% Similarity=0.317 Sum_probs=25.3
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhcccc
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRYF 239 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 239 (505)
+....+.|.|++|+||||+++.++..+...|
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3456789999999999999999998765444
No 202
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.12 E-value=0.026 Score=55.90 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.6
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
....+|.|+|++|+||||+|+.++.++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346799999999999999999998764
No 203
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.12 E-value=0.0084 Score=52.77 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=22.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.+.++|+|+.|+|||||++.+...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45789999999999999999987653
No 204
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.10 E-value=0.012 Score=52.60 Aligned_cols=27 Identities=11% Similarity=0.255 Sum_probs=23.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...+++|.|+.|+|||||++.++....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 356999999999999999999988765
No 205
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.09 E-value=0.011 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.6
Q ss_pred EEEEeccCcchHHHHHHHHHhhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.|+|+|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998775
No 206
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.09 E-value=0.011 Score=51.42 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=21.9
Q ss_pred EEEEeccCcchHHHHHHHHHhhhc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
+|+|.|+.|+||||+++.++.++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 207
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.08 E-value=0.017 Score=54.50 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=24.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
...+++|+|++|+|||||+..++..+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46799999999999999999999776543
No 208
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.06 E-value=0.012 Score=51.67 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=23.1
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhh
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
+...+|+|+|+.|+||||+++.++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999999885
No 209
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.04 E-value=0.012 Score=53.83 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=22.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..+++|.|++|+|||||++.++..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999765
No 210
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.04 E-value=0.013 Score=51.85 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+++|+|++|+|||||++.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998764
No 211
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.00 E-value=0.011 Score=53.01 Aligned_cols=26 Identities=23% Similarity=0.154 Sum_probs=22.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...|+|.|++|+||||+++.++..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998764
No 212
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.00 E-value=0.015 Score=50.13 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..+++|+|+.|+||||+++.++..+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56889999999999999999988763
No 213
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.99 E-value=0.012 Score=52.38 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.6
Q ss_pred EEEEeccCcchHHHHHHHHHhhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.|+|+|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 214
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.98 E-value=0.0088 Score=53.15 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=22.3
Q ss_pred EEEEeccCcchHHHHHHHHHhhhcc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
+|+|.|+.|+||||+++.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987643
No 215
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.98 E-value=0.012 Score=52.92 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...|+|.|++|+||||+++.++..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999875
No 216
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.97 E-value=0.013 Score=51.58 Aligned_cols=25 Identities=24% Similarity=0.334 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...|+|.|+.|+||||+++.++..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999876
No 217
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.95 E-value=0.014 Score=50.79 Aligned_cols=25 Identities=28% Similarity=0.217 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.+.|.|.|++|+|||+||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999999874
No 218
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.93 E-value=0.019 Score=56.81 Aligned_cols=49 Identities=20% Similarity=0.195 Sum_probs=33.7
Q ss_pred ceechhhHHHHHHhhhcc------------CCCceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 190 FIGINSRIEEIKSLLCLE------------SHDARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 190 fvGR~~el~~l~~~L~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.+|-+...+.|...+... ....+-+.++|++|+|||++|+.++..+...
T Consensus 17 IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred hCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 566666666665544210 0124568899999999999999999886443
No 219
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.91 E-value=0.023 Score=50.91 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=29.2
Q ss_pred hHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 196 RIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 196 el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
..+.+...+.. .....|+|+|.+|+|||||+..++.....
T Consensus 25 ~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 25 LADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 34444554432 34678899999999999999999987543
No 220
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.91 E-value=0.052 Score=54.23 Aligned_cols=47 Identities=17% Similarity=0.092 Sum_probs=31.9
Q ss_pred HHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc-ccceEEEe
Q 042739 199 EIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY-FQGNCFMA 246 (505)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 246 (505)
.|...+ .+-....++.|.|.+|+|||+||.+++...... -..++|+.
T Consensus 189 ~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 189 ELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp HHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred hhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 344444 233445699999999999999999999876543 22344543
No 221
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.91 E-value=0.012 Score=51.83 Aligned_cols=21 Identities=33% Similarity=0.484 Sum_probs=19.9
Q ss_pred EEEEeccCcchHHHHHHHHHh
Q 042739 213 IVGIWGMGGIGKTTIASVVFH 233 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~ 233 (505)
+|+|+|+.|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 222
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.90 E-value=0.024 Score=50.49 Aligned_cols=34 Identities=21% Similarity=-0.077 Sum_probs=25.7
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccccceEEE
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFM 245 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (505)
-.|.+.|.||+||||+|..++..+......+.++
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~ 40 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG 40 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE
Confidence 3578999999999999999998876543333333
No 223
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.87 E-value=0.014 Score=51.80 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...+++|.|+.|+|||||++.++..+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 356999999999999999999987653
No 224
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.86 E-value=0.023 Score=59.29 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=40.1
Q ss_pred CCCCceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 186 DLDGFIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++..+...
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 3356899999999888888643 488999999999999999999876543
No 225
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.83 E-value=0.023 Score=54.17 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=27.7
Q ss_pred HHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 199 EIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.|..+|..+-....++.|+|++|+|||+||.+++....
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 33444432223356999999999999999999998753
No 226
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.82 E-value=0.015 Score=55.17 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=23.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.++|+|.|+.|+|||+|+..++.++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999998764
No 227
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.82 E-value=0.015 Score=51.45 Aligned_cols=22 Identities=50% Similarity=0.563 Sum_probs=20.2
Q ss_pred eEEEEeccCcchHHHHHHHHHh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFH 233 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~ 233 (505)
.+++|+|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 228
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.82 E-value=0.03 Score=49.90 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=30.4
Q ss_pred hhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 195 SRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 195 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
...+.+...+.. ...+.++|+|.+|+|||||+..++......
T Consensus 16 ~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 16 RLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 344444544432 346789999999999999999999875444
No 229
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.80 E-value=0.018 Score=51.11 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...+++|.|++|+||||+++.++..+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 357899999999999999999998765
No 230
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.78 E-value=0.17 Score=50.65 Aligned_cols=38 Identities=11% Similarity=0.184 Sum_probs=28.6
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhccccc-ceEEEe
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRYFQ-GNCFMA 246 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~ 246 (505)
....++.|.|.+|+|||||+.+++..+..... .++|+.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34569999999999999999999987654322 344443
No 231
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.78 E-value=0.017 Score=52.90 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=23.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..+|+|.|+.|+|||||++.++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998763
No 232
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.78 E-value=0.012 Score=52.66 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..+++|+|+.|+|||||++.++...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998765
No 233
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.77 E-value=0.018 Score=52.46 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+++|.|+.|+|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998764
No 234
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.77 E-value=0.018 Score=48.48 Aligned_cols=27 Identities=33% Similarity=0.366 Sum_probs=23.8
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
....+++|.|+.|.|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345699999999999999999999876
No 235
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.76 E-value=0.02 Score=52.20 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=21.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...+++|.|++|+|||||++.++..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3569999999999999999999853
No 236
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.75 E-value=0.077 Score=54.76 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=23.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.+++.|+|++|.||||++..+...+...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3588999999999999999998876544
No 237
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.71 E-value=0.04 Score=49.60 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=24.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
....|+|.|++|+||||+++.++..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999998765
No 238
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.71 E-value=0.082 Score=50.41 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=28.3
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
....++.|.|.+|+|||+||..++......-..+.|+.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 34569999999999999999999987654333344443
No 239
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.70 E-value=0.024 Score=52.14 Aligned_cols=110 Identities=12% Similarity=0.133 Sum_probs=57.7
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecc--cccccccHHHHHHHHHHHHhCCCCccCCCCchHHHHh
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVR--EESNKLGVIRVRDEVISQVLGENLKVGTLTIPQNIKK 286 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~ 286 (505)
....+++|+|+.|+|||||++.++..+...+.+.+++.... ...... .. + ................+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~--~~----~---v~q~~~gl~~~~l~~~la~ 93 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHK--KS----I---VNQREVGEDTKSFADALRA 93 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS--SS----E---EEEEEBTTTBSCHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCc--ce----e---eeHHHhCCCHHHHHHHHHH
Confidence 34569999999999999999999876644323344332110 000000 00 0 0000000011111445555
Q ss_pred ccCCCeEEEEEeCCCCCHHHHHHHhcCcCCCCCCCEEEEEeCcch
Q 042739 287 GLQRMKVLIVLDDVHDEFTQLESLAGVIDRFSPGSRIIITTRDKR 331 (505)
Q Consensus 287 ~l~~~~~LlVlDdv~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~ 331 (505)
.+...+-+|++|.. .+.+....+.... ..|..|++|+-...
T Consensus 94 aL~~~p~illlDEp-~D~~~~~~~l~~~---~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 94 ALREDPDVIFVGEM-RDLETVETALRAA---ETGHLVFGTLHTNT 134 (261)
T ss_dssp HHHHCCSEEEESCC-CSHHHHHHHHHHH---HTTCEEEEEECCSS
T ss_pred HHhhCCCEEEeCCC-CCHHHHHHHHHHH---ccCCEEEEEeCcch
Confidence 55566779999998 4555544443322 24556777776543
No 240
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.70 E-value=0.017 Score=50.46 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+|+|+|+.|+||||+++.+...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 36789999999999999999998863
No 241
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.69 E-value=0.035 Score=52.11 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=24.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
..+++++|++|+||||++..++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6789999999999999999999877544
No 242
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.66 E-value=0.015 Score=51.93 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.8
Q ss_pred eEEEEeccCcchHHHHHHHHHhhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..|+|.|++|+||||+|+.++..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999876
No 243
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.66 E-value=0.018 Score=54.08 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.++++|.||.|+|||+||..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3588999999999999999999875
No 244
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.65 E-value=0.055 Score=48.04 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=24.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
...|+|.|+.|+||||++..++..+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999987654
No 245
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.64 E-value=0.018 Score=54.54 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=24.4
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
....+++|.|+.|+|||||++.++..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4567999999999999999999987654
No 246
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.63 E-value=0.054 Score=51.70 Aligned_cols=85 Identities=19% Similarity=0.183 Sum_probs=50.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCCcc---CCCCchHHHHhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENLKV---GTLTIPQNIKKG 287 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~~~~~~~~l~~~ 287 (505)
...++|+|+.|+|||||++.++..+... ...+.+.......... ....... ........+...
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~~~~-------------~~~~i~~~~ggg~~~r~~la~a 236 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVFKH-------------HKNYTQLFFGGNITSADCLKSC 236 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCCCSS-------------CSSEEEEECBTTBCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeecccccc-------------chhEEEEEeCCChhHHHHHHHH
Confidence 3489999999999999999998776442 3444444221111000 0000000 122235667777
Q ss_pred cCCCeEEEEEeCCCCCHHHHHHH
Q 042739 288 LQRMKVLIVLDDVHDEFTQLESL 310 (505)
Q Consensus 288 l~~~~~LlVlDdv~~~~~~~~~l 310 (505)
+..++-+|++|.. .+.+..+.+
T Consensus 237 L~~~p~ilildE~-~~~e~~~~l 258 (330)
T 2pt7_A 237 LRMRPDRIILGEL-RSSEAYDFY 258 (330)
T ss_dssp TTSCCSEEEECCC-CSTHHHHHH
T ss_pred hhhCCCEEEEcCC-ChHHHHHHH
Confidence 8888889999999 444444433
No 247
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.62 E-value=0.019 Score=54.76 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.8
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.+|+|.|+.|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998764
No 248
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.62 E-value=0.021 Score=53.41 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=23.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..++++|.|+.|+|||+||..++..+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999999875
No 249
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.60 E-value=0.016 Score=52.96 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=22.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...|+|+|++|+||||+++.++..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34799999999999999999998764
No 250
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.59 E-value=0.13 Score=51.09 Aligned_cols=55 Identities=20% Similarity=0.362 Sum_probs=35.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHH
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQ 267 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 267 (505)
.+.++|.|.+|+|||+|+.++++.+.......+.+..+. .......++.+++...
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iG--ER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG--ERTREGNDLYHEMIES 207 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEES--CCHHHHHHHHHHHHHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECC--CcchHHHHHHHHhhhc
Confidence 557889999999999999999988654332222222222 2234555666666554
No 251
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.55 E-value=0.026 Score=53.17 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=24.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
...+++|+|+.|+|||||+..++..+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999987643
No 252
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.54 E-value=0.019 Score=54.28 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=23.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.++++|+|+.|+|||||+..++.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35899999999999999999998753
No 253
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.53 E-value=0.021 Score=51.48 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=22.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..+++|.|++|+||||+++.++..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998763
No 254
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.47 E-value=0.039 Score=53.19 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=27.1
Q ss_pred HHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 201 KSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 201 ~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...|..+-....++.|+|++|+|||||+..++...
T Consensus 121 D~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 121 DKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33443222346899999999999999999999876
No 255
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.44 E-value=0.014 Score=54.74 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=20.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...+|+|+|+.|+||||+|+.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988654
No 256
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.41 E-value=0.044 Score=63.86 Aligned_cols=47 Identities=28% Similarity=0.252 Sum_probs=34.0
Q ss_pred HHHhhh-ccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 200 IKSLLC-LESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 200 l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
|..+|. .+-...+.+.|+|++|+|||+||.+++.....+-....|+.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 444443 22234679999999999999999999988666545566665
No 257
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.41 E-value=0.02 Score=48.99 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.9
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
++++|+|+.|+|||||+..+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 47899999999999999999887654
No 258
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.40 E-value=0.021 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.0
Q ss_pred EEEEeccCcchHHHHHHHHHhhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.|+|.|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998876
No 259
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.38 E-value=0.022 Score=50.23 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.9
Q ss_pred EEEEeccCcchHHHHHHHHHhhhc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
+|+|.|+.|+||||+++.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988753
No 260
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.37 E-value=0.03 Score=47.98 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=23.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
.++++|+|+.|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 468999999999999999999987643
No 261
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.36 E-value=0.021 Score=50.81 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.8
Q ss_pred EEEEeccCcchHHHHHHHHHhhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999875
No 262
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.34 E-value=0.015 Score=52.45 Aligned_cols=25 Identities=32% Similarity=0.386 Sum_probs=16.5
Q ss_pred ceEEEEeccCcchHHHHHHHHH-hhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVF-HQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~-~~~ 235 (505)
..+++|+|+.|+|||||++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 654
No 263
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.31 E-value=0.029 Score=52.71 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=24.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
...+++|.|++|+|||||+..++..+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 45699999999999999999999876543
No 264
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.31 E-value=0.026 Score=50.95 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=22.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...|+|.|++|+||||+|+.++.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998763
No 265
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.22 E-value=0.028 Score=50.12 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFH 233 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~ 233 (505)
..+|+|.|+.|+||||+++.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 266
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.22 E-value=0.041 Score=50.48 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=23.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...++++.|.||+|||||+..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999998766
No 267
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.22 E-value=0.025 Score=52.73 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFH 233 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~ 233 (505)
...+|+|+|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999983
No 268
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.21 E-value=0.026 Score=50.56 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.4
Q ss_pred eEEEEeccCcchHHHHHHHHHhhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
-.++|.|++|+||||+|..++.++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999998875
No 269
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.21 E-value=0.037 Score=55.87 Aligned_cols=48 Identities=0% Similarity=0.007 Sum_probs=34.4
Q ss_pred ceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 190 FIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 190 fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
.+.|.+..+.+.+..........+|.|.|++|+||||+++.++.++..
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 444555555666655322233578999999999999999999999764
No 270
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.16 E-value=0.025 Score=56.17 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=24.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.++|+|+|++|+||||++..++..+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999999876544
No 271
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.12 E-value=0.06 Score=48.26 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=21.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
...|+|.|+.|+||||+++.++..+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 5689999999999999999999987654
No 272
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.11 E-value=0.036 Score=53.42 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=24.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
...+++|+|+.|+|||||+..++..+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 4679999999999999999999987653
No 273
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.10 E-value=0.073 Score=47.52 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=25.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
....|+|.|+.|+||||+++.+...+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999998765
No 274
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.09 E-value=0.087 Score=50.07 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=27.4
Q ss_pred HHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 199 EIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.|..+|..+-....++.|+|++|+|||+||.+++...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444453222346799999999999999999999763
No 275
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.04 E-value=0.05 Score=52.85 Aligned_cols=28 Identities=25% Similarity=0.150 Sum_probs=24.0
Q ss_pred CCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 208 SHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 208 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
-+....++|+|++|+|||||++.++...
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3456799999999999999999999764
No 276
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.04 E-value=0.022 Score=49.58 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=21.4
Q ss_pred EEEEeccCcchHHHHHHHHHhhhc
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
+++|+|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 688999999999999999987654
No 277
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.99 E-value=0.041 Score=51.97 Aligned_cols=37 Identities=27% Similarity=0.387 Sum_probs=27.9
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEE
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFM 245 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (505)
...++|+|+|-||+||||+|..++..+......+..+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 3467888899999999999999998876553333333
No 278
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.98 E-value=0.032 Score=52.81 Aligned_cols=28 Identities=32% Similarity=0.350 Sum_probs=24.3
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
....+++|.|+.|+|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467999999999999999999988664
No 279
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.98 E-value=0.14 Score=49.37 Aligned_cols=29 Identities=24% Similarity=0.119 Sum_probs=24.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
..+.+.|.|++|+|||+|+.++++.+...
T Consensus 174 rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~ 202 (427)
T 3l0o_A 174 KGQRGMIVAPPKAGKTTILKEIANGIAEN 202 (427)
T ss_dssp TTCEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCChhHHHHHHHHHHhhc
Confidence 35578899999999999999999876543
No 280
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.95 E-value=0.066 Score=48.29 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=24.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
...|+|.|+.|+||||++..++..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999887554
No 281
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.95 E-value=0.031 Score=52.63 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=21.1
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.+|.|.|++|+||||+|+.++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999875
No 282
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.92 E-value=0.049 Score=55.72 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=24.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
...+++|+|+.|+|||||++.++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3578999999999999999999988754
No 283
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.91 E-value=0.053 Score=62.33 Aligned_cols=50 Identities=26% Similarity=0.208 Sum_probs=34.0
Q ss_pred HHHHHHhhh-ccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 197 IEEIKSLLC-LESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 197 l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
..+|..+|. .+-....++.|.|++|+||||||.+++......-..+.|+.
T Consensus 717 ~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 717 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 344444553 22234679999999999999999999988665433445554
No 284
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.90 E-value=0.075 Score=47.17 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=24.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
...|+|.|+.|+||||++..++..+...
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3588999999999999999999887654
No 285
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.90 E-value=0.042 Score=55.01 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=27.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
...+++|+|+.|+|||||++.++..+... .+.+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 46799999999999999999999876543 3344443
No 286
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.89 E-value=0.041 Score=51.19 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..++.|.|++|+|||||+..++..+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 56999999999999999999997654
No 287
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.88 E-value=0.046 Score=54.23 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=25.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
..++|.|+|.+|+||||++..++..+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999887654
No 288
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.87 E-value=0.026 Score=51.05 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+++|.|+.|+|||||++.++--.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 35689999999999999999887543
No 289
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.83 E-value=0.14 Score=50.93 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=35.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccc-cceEEEeecccccccccHHHHHHHHHH
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYF-QGNCFMANVREESNKLGVIRVRDEVIS 266 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~ll~ 266 (505)
..+.++|.|.+|+|||+|+.++++.+.... +.++|. .+. .......++.+++..
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~-~iG--ER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVG--ERTREGNDLYMEMKE 218 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE-EES--CCSHHHHHHHHHHHH
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE-Ecc--cCcHHHHHHHHhhhc
Confidence 355788999999999999999999865433 333443 222 223445555555554
No 290
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=93.79 E-value=0.094 Score=50.50 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=26.1
Q ss_pred CCCceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 208 SHDARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 208 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.+...++.+.|.||+||||+|..++..+...
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~ 53 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEK 53 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHC
Confidence 4456788889999999999999999887655
No 291
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.78 E-value=0.048 Score=50.32 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=26.0
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccccceEEE
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFM 245 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (505)
++|+|.|-||+||||+|..++..+......+..+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 4677899999999999999998876543333333
No 292
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.74 E-value=0.046 Score=54.51 Aligned_cols=37 Identities=19% Similarity=0.032 Sum_probs=28.4
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEE
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFM 245 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (505)
....++.|.|.+|+|||+||.+++.........++|+
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 3456999999999999999999998865443334444
No 293
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.73 E-value=0.052 Score=50.91 Aligned_cols=29 Identities=28% Similarity=0.243 Sum_probs=24.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
...+++|+|++|+||||++..++..+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999877543
No 294
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.73 E-value=0.039 Score=46.71 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.+-+.|.|++|+||||||.++..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 457889999999999999999985
No 295
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.67 E-value=0.031 Score=54.84 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=26.2
Q ss_pred HHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhh
Q 042739 199 EIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.|-.+|..+-....++.|.|++|+|||||+..++-.
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 444455322233579999999999999999988744
No 296
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.65 E-value=0.07 Score=53.87 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=23.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
..++|+|+|.+|+||||++..++..+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46799999999999999999999776543
No 297
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.61 E-value=0.29 Score=46.99 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.1
Q ss_pred eEEEEeccCcchHHHHHHHHHhhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.+++|.|++|+|||||+..+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 488999999999999999988654
No 298
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.60 E-value=0.14 Score=51.94 Aligned_cols=38 Identities=8% Similarity=-0.052 Sum_probs=29.5
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhccc-ccceEEEe
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRY-FQGNCFMA 246 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 246 (505)
....++.|.|.+|+|||+||.+++...... -..++|+.
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 345689999999999999999999887654 33455554
No 299
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.59 E-value=0.032 Score=50.58 Aligned_cols=26 Identities=23% Similarity=0.533 Sum_probs=22.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+++|.|+.|+|||||++.++.-+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999999999999999988654
No 300
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.58 E-value=0.036 Score=50.27 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.6
Q ss_pred eEEEEeccCcchHHHHHHHHHhhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.+++|.|+.|+|||||++.++--.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998643
No 301
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.56 E-value=0.038 Score=53.78 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=22.5
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
++|+|.|+.|+|||+||..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5889999999999999999998753
No 302
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.52 E-value=0.029 Score=50.32 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
..+++|.|+.|+|||||++.++--
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999988754
No 303
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.51 E-value=0.031 Score=49.50 Aligned_cols=24 Identities=38% Similarity=0.238 Sum_probs=21.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
..+++|.|+.|+|||||++.++-.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999988865
No 304
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.47 E-value=0.086 Score=50.59 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=24.2
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.+..+++|+|.+|+|||||+..++..+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999987654
No 305
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.46 E-value=0.034 Score=51.24 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+++|.|+.|+|||||++.++--+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999887643
No 306
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.41 E-value=0.04 Score=51.80 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=23.3
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
+...+++|+|+.|.|||||++.++.-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345689999999999999999998764
No 307
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.40 E-value=0.039 Score=50.20 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...+++|.|+.|+|||||++.++--
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4569999999999999999998764
No 308
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.39 E-value=0.086 Score=50.33 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=29.5
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
...+++.+.|-||+||||+|..++..+......+..+.
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34678899999999999999999988776544444443
No 309
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.38 E-value=0.044 Score=49.98 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=22.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
..+++|.|+.|+|||||++.++--+..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 458999999999999999998865543
No 310
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.36 E-value=0.04 Score=47.91 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.-.++|.|++|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998753
No 311
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.35 E-value=0.048 Score=49.29 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+|+|.|+.|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998865
No 312
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.35 E-value=0.045 Score=49.63 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
+..|+|.|..|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998864
No 313
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.34 E-value=0.043 Score=50.68 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...+++|.|+.|+|||||++.++--
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999998874
No 314
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.33 E-value=0.048 Score=45.48 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.4
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
+.|+|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 315
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.31 E-value=0.06 Score=50.31 Aligned_cols=27 Identities=33% Similarity=0.625 Sum_probs=23.6
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
++|+|.|-||+||||+|..++..+...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 578889999999999999999887654
No 316
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.31 E-value=0.092 Score=50.42 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=28.7
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhc--ccccceEEE
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQIS--RYFQGNCFM 245 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~ 245 (505)
...+++.+.|.||+||||+|..++..+. .....+..+
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vlli 54 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLI 54 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4468999999999999999999998877 443333333
No 317
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.31 E-value=0.047 Score=46.09 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.5
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
..|+|.|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999863
No 318
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.31 E-value=0.1 Score=48.01 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=20.1
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
..++|+|.+|+|||||...+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 46889999999999999998854
No 319
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.31 E-value=0.037 Score=50.94 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=22.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+++|.|+.|+|||||++.++--+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45689999999999999999887643
No 320
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.30 E-value=0.081 Score=50.38 Aligned_cols=35 Identities=31% Similarity=0.368 Sum_probs=27.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEE
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFM 245 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (505)
..++...|.||+||||+|..++..+......+..+
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlv 48 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVI 48 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEE
Confidence 57888899999999999999998876653333333
No 321
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.30 E-value=0.1 Score=49.90 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=24.0
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
....+++|.|++|+|||||...+...+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4567999999999999999999986543
No 322
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.27 E-value=0.22 Score=51.80 Aligned_cols=26 Identities=35% Similarity=0.379 Sum_probs=22.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.+.+.|+|++|.||||++..+...+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999988876654
No 323
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.24 E-value=0.034 Score=47.97 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=19.2
Q ss_pred EEEEeccCcchHHHHHHHHHh
Q 042739 213 IVGIWGMGGIGKTTIASVVFH 233 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~ 233 (505)
-|+|.|.+|+|||||+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999986
No 324
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.23 E-value=0.09 Score=60.49 Aligned_cols=50 Identities=26% Similarity=0.208 Sum_probs=35.8
Q ss_pred HHHHHHhhh-ccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 197 IEEIKSLLC-LESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 197 l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
...|..+|. .+-...+++.|+|++|+||||||.+++......-..++|+.
T Consensus 368 i~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis 418 (1706)
T 3cmw_A 368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 345555553 22234679999999999999999999987665544566665
No 325
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.22 E-value=0.13 Score=45.01 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=25.9
Q ss_pred EEEEeccCcchHHHHHHHHHhhhcccccceEEE
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQISRYFQGNCFM 245 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (505)
.|+|-|.-|+||||.++.+++.+.......++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 478899999999999999999887654444443
No 326
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.22 E-value=0.13 Score=45.36 Aligned_cols=29 Identities=28% Similarity=0.542 Sum_probs=24.8
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhccccc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYFQ 240 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 240 (505)
+.|+|-|.-|+||||+++.++..+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 47889999999999999999998865443
No 327
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.21 E-value=0.042 Score=48.03 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.6
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
-.++|.|++|+|||||...+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999875
No 328
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.19 E-value=0.1 Score=60.96 Aligned_cols=54 Identities=26% Similarity=0.226 Sum_probs=37.3
Q ss_pred chhhHHHHHHhhh-ccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 193 INSRIEEIKSLLC-LESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 193 R~~el~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
-..-...|..+|. .+-....++.|+|++|+|||+||.+++......-..++|+.
T Consensus 364 I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 364 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp ECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred eeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3333445555553 22234679999999999999999999988765444555654
No 329
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.19 E-value=0.045 Score=50.00 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=21.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
..+++|.|+.|+|||||++.++--
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 330
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.15 E-value=0.04 Score=50.47 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=22.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+++|.|+.|+|||||++.++--.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999999999999999987643
No 331
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.14 E-value=0.041 Score=50.62 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+++|.|+.|+|||||++.++--+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 35689999999999999999988654
No 332
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.14 E-value=0.2 Score=45.18 Aligned_cols=40 Identities=18% Similarity=0.069 Sum_probs=29.0
Q ss_pred eechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 191 IGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 191 vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
-=|+.+.+.+..++.. . -+.|+|+.|.|||.+|..++...
T Consensus 93 ~l~~~Q~~ai~~~~~~----~-~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 93 SLRDYQEKALERWLVD----K-RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCHHHHHHHHHHTTT----S-EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHhC----C-CEEEEeCCCCCHHHHHHHHHHHc
Confidence 3355566666666532 1 37789999999999999888765
No 333
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.13 E-value=0.92 Score=44.98 Aligned_cols=25 Identities=12% Similarity=0.335 Sum_probs=21.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
+...|+|.|.+|+|||||...+...
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCC
Confidence 3567889999999999999999864
No 334
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.13 E-value=0.079 Score=48.09 Aligned_cols=32 Identities=25% Similarity=0.463 Sum_probs=24.7
Q ss_pred EEEeccCcchHHHHHHHHHhhhcccccceEEE
Q 042739 214 VGIWGMGGIGKTTIASVVFHQISRYFQGNCFM 245 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (505)
|+|.|-||+||||+|..++..+......+..+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 55699999999999999999887654333333
No 335
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.13 E-value=0.095 Score=53.66 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=33.0
Q ss_pred ceechhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 190 FIGINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 190 fvGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
.+.|....+.+.+..........+|.++|++|+||||+|+.+...+..
T Consensus 351 ~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 351 WFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 344444455555555222233578999999999999999999987643
No 336
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.11 E-value=0.04 Score=50.04 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.4
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
..+++|.|+.|+|||||++.++--
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999988764
No 337
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.09 E-value=0.038 Score=51.24 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
..+++|.|+.|+|||||++.++--
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 458999999999999999988764
No 338
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.06 E-value=0.04 Score=50.86 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=21.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...+++|.|+.|+|||||++.++--
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3568999999999999999988864
No 339
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.06 E-value=0.041 Score=49.55 Aligned_cols=26 Identities=19% Similarity=0.515 Sum_probs=22.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..+++|.|+.|+|||||++.++-.+.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 46899999999999999999887543
No 340
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.03 E-value=0.041 Score=50.51 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..+++|.|+.|+|||||++.++--+
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999887643
No 341
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.03 E-value=0.043 Score=50.79 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=22.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+++|.|+.|+|||||++.++--+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999987643
No 342
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.02 E-value=0.035 Score=49.40 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=21.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..+++|.|+.|+|||||++.++--.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999987643
No 343
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.98 E-value=0.091 Score=54.11 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=24.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...+|.|+|++|+||||+|+.+...+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 357899999999999999999998865
No 344
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.97 E-value=0.043 Score=50.06 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=21.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..+++|.|+.|+|||||++.++--+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987643
No 345
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.89 E-value=0.052 Score=53.36 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=26.4
Q ss_pred HHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhh
Q 042739 199 EIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.+.+.|........+++|.|+.|+|||||.+.++..
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 334444322234569999999999999999999874
No 346
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.88 E-value=0.047 Score=50.42 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...+++|.|+.|+|||||++.++--
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3568999999999999999988764
No 347
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.81 E-value=0.062 Score=46.52 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...|+|.|.+|+|||||+..+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999999865
No 348
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.72 E-value=0.056 Score=45.35 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.3
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
-.|+|.|.+|+|||||+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999999864
No 349
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.70 E-value=0.085 Score=51.27 Aligned_cols=108 Identities=12% Similarity=0.172 Sum_probs=56.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCC-CCccCCCCchHHHHhcc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGE-NLKVGTLTIPQNIKKGL 288 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~~~l~~~l 288 (505)
...+++|+|+.|+|||||+..++..+.......+.+..- +... ....-. ..... ..+.........++..+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~-----~~e~--~~~~~~-~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-----PIEY--VFKHKK-SIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES-----SCCS--CCCCSS-SEEEEEEBTTTBSCSHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc-----cHhh--hhccCc-eEEEeeecCCCHHHHHHHHHHHh
Confidence 456899999999999999999988765432233322210 0000 000000 00000 00001112255677777
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHhcCcCCCCCCCEEEEEeCc
Q 042739 289 QRMKVLIVLDDVHDEFTQLESLAGVIDRFSPGSRIIITTRD 329 (505)
Q Consensus 289 ~~~~~LlVlDdv~~~~~~~~~l~~~l~~~~~~~~iliTsR~ 329 (505)
...+-+|++|.. .+.+......... ..|..++.|+-.
T Consensus 207 ~~~pd~illdE~-~d~e~~~~~l~~~---~~g~~vi~t~H~ 243 (372)
T 2ewv_A 207 REDPDVIFVGEM-RDLETVETALRAA---ETGHLVFGTLHT 243 (372)
T ss_dssp TSCCSEEEESCC-CSHHHHHHHHHHH---TTTCEEEECCCC
T ss_pred hhCcCEEEECCC-CCHHHHHHHHHHH---hcCCEEEEEECc
Confidence 777889999999 4555444433322 235556665554
No 350
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.69 E-value=0.085 Score=53.72 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=24.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
...+|.++|++|.||||+|+.++..+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3568999999999999999999987643
No 351
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.67 E-value=0.054 Score=45.21 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=19.7
Q ss_pred EEEEeccCcchHHHHHHHHHhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.|+|.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 352
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.64 E-value=0.051 Score=49.74 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=21.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..+++|.|+.|+|||||++.++--+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999988654
No 353
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.64 E-value=0.054 Score=50.96 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=22.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+++|+|+.|+|||||++.++.-+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45689999999999999999887643
No 354
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.62 E-value=0.068 Score=45.97 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999864
No 355
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.62 E-value=0.099 Score=51.54 Aligned_cols=29 Identities=28% Similarity=0.243 Sum_probs=24.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
...+++|+|++|+||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999876544
No 356
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.61 E-value=0.16 Score=50.07 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=28.5
Q ss_pred HHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 198 EEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 198 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
..|.+.+. ....+++|+|+.|+|||||++.++..+...
T Consensus 157 ~~L~~l~~---~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 157 DNFRRLIK---RPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp HHHHHHHT---SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred HHHHHHHH---hcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 34444442 345689999999999999999998876543
No 357
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.56 E-value=0.086 Score=45.22 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
....|+|.|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999998764
No 358
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.55 E-value=0.058 Score=45.67 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=20.2
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
--|+|.|.+|+|||+|+..+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46889999999999999999754
No 359
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.53 E-value=0.052 Score=50.43 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+++|.|+.|+|||||++.++--+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 35689999999999999999887643
No 360
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.49 E-value=0.075 Score=45.15 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=21.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
....|+|.|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567889999999999999999864
No 361
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.44 E-value=0.13 Score=45.04 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=24.9
Q ss_pred eEEEEe-ccCcchHHHHHHHHHhhhcccccceEEE
Q 042739 212 RIVGIW-GMGGIGKTTIASVVFHQISRYFQGNCFM 245 (505)
Q Consensus 212 ~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (505)
++|+|+ +-||+||||+|..++..+......+..+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli 36 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV 36 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 466666 7899999999999998876643334444
No 362
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.44 E-value=0.073 Score=46.78 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=23.2
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
.+|+|.|+.|+||||+++.++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999874
No 363
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.40 E-value=0.064 Score=51.56 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=22.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...+++|.|+.|+|||||.+.++--
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 3568999999999999999999864
No 364
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.40 E-value=0.11 Score=50.13 Aligned_cols=27 Identities=30% Similarity=0.280 Sum_probs=23.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
+..+|+|+|++|+|||||...+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 367999999999999999999987543
No 365
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.35 E-value=0.067 Score=44.72 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEEeccCcchHHHHHHHHHhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.|+|.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998864
No 366
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.31 E-value=0.054 Score=58.42 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=39.4
Q ss_pred CCCCceechhhHHHHHHhhhcc-----------CCCceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 186 DLDGFIGINSRIEEIKSLLCLE-----------SHDARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 186 ~~~~fvGR~~el~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
.....+|.+...+.|.+.+... -...+.+.++|++|+|||+||+.++.....
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC
Confidence 3345788888888888876421 122456889999999999999999988754
No 367
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.31 E-value=0.055 Score=48.69 Aligned_cols=25 Identities=32% Similarity=0.105 Sum_probs=22.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...+++|.|+.|+|||||++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4679999999999999999988765
No 368
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.31 E-value=0.073 Score=51.04 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.3
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+++|.|+.|+|||||.+.++--.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 35689999999999999999998643
No 369
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.31 E-value=0.072 Score=44.55 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=19.1
Q ss_pred EEEeccCcchHHHHHHHHHhh
Q 042739 214 VGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~ 234 (505)
|+|.|.+|+|||+|...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 370
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.30 E-value=0.066 Score=45.60 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.3
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
--|+|.|.+|+|||+|+..+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999864
No 371
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.29 E-value=0.065 Score=49.55 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.4
Q ss_pred EEEEeccCcchHHHHHHHHHhhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.++|.|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998653
No 372
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.29 E-value=0.069 Score=44.69 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.3
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.-|+|.|.+|+|||||+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46789999999999999999864
No 373
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.27 E-value=0.068 Score=46.10 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=20.3
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
-.|+|.|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36789999999999999999864
No 374
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.26 E-value=0.067 Score=45.00 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=18.9
Q ss_pred EEEEeccCcchHHHHHHHHHh
Q 042739 213 IVGIWGMGGIGKTTIASVVFH 233 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~ 233 (505)
-|+|.|.+|+|||||+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999864
No 375
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.24 E-value=0.043 Score=50.54 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=23.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
....|+|.|..|+||||+++.++..+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999988764
No 376
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.22 E-value=0.071 Score=51.32 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=21.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...+++|.|+.|+|||||.+.++--
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3568999999999999999999864
No 377
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.22 E-value=0.069 Score=46.01 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.--|+|.|.+|+|||+|+..+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999988864
No 378
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.22 E-value=0.07 Score=44.89 Aligned_cols=24 Identities=25% Similarity=0.309 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.-.|+|.|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999999864
No 379
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.19 E-value=0.069 Score=44.95 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=20.1
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
-.|+|.|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999863
No 380
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.17 E-value=0.13 Score=47.43 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=25.4
Q ss_pred HHHhhhccCCCceEEEEeccCcchHHHHHHHHHhh
Q 042739 200 IKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 200 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
+...+.........|+|.|.+|+|||||...+...
T Consensus 28 ~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 28 LLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 33333333334567889999999999999999864
No 381
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.13 E-value=0.074 Score=44.65 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.6
Q ss_pred EEEEeccCcchHHHHHHHHHhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
-|+|.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 382
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.12 E-value=0.074 Score=44.52 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=19.7
Q ss_pred EEEEeccCcchHHHHHHHHHhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
-|+|.|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999864
No 383
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.12 E-value=0.045 Score=56.84 Aligned_cols=49 Identities=14% Similarity=0.038 Sum_probs=34.9
Q ss_pred CCceechhhHHHHHHhhhccCC---------CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 188 DGFIGINSRIEEIKSLLCLESH---------DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 188 ~~fvGR~~el~~l~~~L~~~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
+.++|.+.....+...+..+.. +...+.++|++|+|||+||+.++....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCS
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCC
Confidence 4588998877766555543210 011588999999999999999987653
No 384
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.08 E-value=0.068 Score=45.49 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.4
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
..|+|.|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999864
No 385
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.07 E-value=0.07 Score=45.84 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.--|+|.|.+|+|||+|+..+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999999864
No 386
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.07 E-value=0.072 Score=47.33 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.6
Q ss_pred eEEEEeccCcchHHHHHHHHHhhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
.+|+|+|+.|+||||+++.++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 378999999999999999998875
No 387
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.06 E-value=0.086 Score=46.66 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=22.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
....|+|.|++|+|||||+..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35578899999999999999998753
No 388
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.06 E-value=0.079 Score=45.02 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.--|+|.|.+|+|||+|+..+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345789999999999999999864
No 389
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.05 E-value=0.079 Score=51.02 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...+++|.|+.|+|||||.+.++--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 3568999999999999999999864
No 390
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.05 E-value=0.076 Score=44.61 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.3
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
--|+|.|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999865
No 391
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.05 E-value=0.14 Score=47.02 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=25.9
Q ss_pred HHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhh
Q 042739 199 EIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 199 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
++.+.+.........|+|.|.+|+|||||...+...
T Consensus 24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 333333333334567889999999999999999864
No 392
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.04 E-value=0.11 Score=48.92 Aligned_cols=33 Identities=30% Similarity=0.354 Sum_probs=25.9
Q ss_pred HHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhh
Q 042739 197 IEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 197 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
+++|.+.+. ..+++|.|++|+|||||++.+. ..
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 455655553 3488999999999999999998 54
No 393
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.04 E-value=0.065 Score=50.08 Aligned_cols=26 Identities=19% Similarity=0.509 Sum_probs=22.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
...+++|.|+.|+|||||++.++--+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999988654
No 394
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.02 E-value=0.073 Score=46.25 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=19.7
Q ss_pred eEEEEeccCcchHHHHHHHHHh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFH 233 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~ 233 (505)
--|+|.|.+|+|||+|...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4588999999999999999985
No 395
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.01 E-value=0.08 Score=51.29 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...+++|.|+.|+|||||.+.++--
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcC
Confidence 3568999999999999999999864
No 396
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.01 E-value=0.077 Score=45.02 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.--|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999999864
No 397
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.00 E-value=0.067 Score=44.87 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.6
Q ss_pred EEEEeccCcchHHHHHHHHHh
Q 042739 213 IVGIWGMGGIGKTTIASVVFH 233 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~ 233 (505)
-|+|.|.+|+|||+|...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998864
No 398
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.99 E-value=0.081 Score=51.01 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...+++|.|+.|+|||||.+.++--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 3568999999999999999999864
No 399
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=91.98 E-value=0.82 Score=38.25 Aligned_cols=65 Identities=11% Similarity=0.046 Sum_probs=47.6
Q ss_pred chHHHHHHHHHhcCcceeeccccccCCCchhHHH----HHHHhhcceEEEEecC---CcccchhhHHHHHHHHHhh
Q 042739 30 GFTSHLAAALHRKQIQFFIDDEELKKGDEISPAL----SNAIETTDISIIIFSK---GYASSKWCLNELVKTLDCK 98 (505)
Q Consensus 30 ~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i----~~~i~~s~~~i~v~s~---~~~~s~~~~~El~~~~~~~ 98 (505)
.|.+.+.+.|++.|+.||+-..+- ..+...| .++|++|+++|++++| .+.+ .-+..|+..+....
T Consensus 27 ~~~~~l~~~l~~~G~~v~~P~~~~---~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D-~GTafEiGyA~Alg 98 (161)
T 2f62_A 27 SYYNKVRELLKKENVMPLIPTDNE---ATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPD-CGTAFEVGCAAALN 98 (161)
T ss_dssp HHHHHHHHHHHTTTCEEECTTTTC---CSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCC-HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCEEECCCccC---cchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCC-CcHHHHHHHHHHCC
Confidence 489999999999999998854221 1255555 6789999999999996 3333 34677888776544
No 400
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.98 E-value=0.078 Score=45.15 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
....|+|.|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457889999999999999999864
No 401
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.97 E-value=0.087 Score=45.59 Aligned_cols=25 Identities=12% Similarity=0.339 Sum_probs=21.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
+...|+|.|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999864
No 402
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.92 E-value=0.076 Score=44.63 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.1
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
--|+|.|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35789999999999999999854
No 403
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=91.92 E-value=0.18 Score=47.98 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=28.1
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhcccccceEEE
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFM 245 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (505)
+..+++.+.|.||+||||+|..++..+......+..+
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllv 53 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLI 53 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEE
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 3456888899999999999999998877653333333
No 404
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.90 E-value=0.08 Score=45.70 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.--|+|.|.+|+|||+|+..+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 346789999999999999999864
No 405
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=91.89 E-value=0.094 Score=49.17 Aligned_cols=40 Identities=20% Similarity=0.418 Sum_probs=27.8
Q ss_pred hHHHHHHhhhccCCCceEEEEec---cCcchHHHHHHHHHhhhccc
Q 042739 196 RIEEIKSLLCLESHDARIVGIWG---MGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 196 el~~l~~~L~~~~~~~~~v~I~G---~~GiGKTtLa~~~~~~~~~~ 238 (505)
.+.++.+.+.. ..++++|++ -||+||||+|..++..+...
T Consensus 22 ~~~~~~r~~~~---~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~ 64 (298)
T 2oze_A 22 ILEELRRILSN---KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKL 64 (298)
T ss_dssp HHHHHHHHHHH---HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC---CCcEEEEEeccCCCCchHHHHHHHHHHHHHhC
Confidence 44555555542 234566664 99999999999999877654
No 406
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.84 E-value=0.078 Score=50.33 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..++++|+|+.|.|||||++.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 36799999999999999999998653
No 407
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.84 E-value=0.084 Score=44.31 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=20.2
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
--|+|.|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999863
No 408
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.83 E-value=0.087 Score=50.71 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=21.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...+++|.|+.|+|||||++.++--
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 3569999999999999999988764
No 409
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.83 E-value=0.27 Score=51.68 Aligned_cols=47 Identities=23% Similarity=0.166 Sum_probs=30.0
Q ss_pred hhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 195 SRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 195 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
...+.+...|.. ..+..|+||||.|||+.+.++...+.... ..+.++
T Consensus 193 ~Q~~AV~~al~~----~~~~lI~GPPGTGKT~ti~~~I~~l~~~~-~~ILv~ 239 (646)
T 4b3f_X 193 SQKEAVLFALSQ----KELAIIHGPPGTGKTTTVVEIILQAVKQG-LKVLCC 239 (646)
T ss_dssp HHHHHHHHHHHC----SSEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred HHHHHHHHHhcC----CCceEEECCCCCCHHHHHHHHHHHHHhCC-CeEEEE
Confidence 445566666642 23788999999999987766665543322 234444
No 410
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.81 E-value=0.084 Score=50.73 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=21.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
..+++|.|+.|+|||||.+.++--
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999998864
No 411
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.79 E-value=0.088 Score=50.97 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.9
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...+++|.|+.|+|||||.+.++--
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 3568999999999999999998864
No 412
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.76 E-value=0.072 Score=49.00 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=22.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..+++|.|+.|+|||||++.++-..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999988654
No 413
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.71 E-value=0.098 Score=45.12 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=21.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...|+|.|.+|+|||||+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999999865
No 414
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.67 E-value=0.087 Score=45.23 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=20.7
Q ss_pred EEEEeccCcchHHHHHHHHHhhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
+.+|+|+.|+|||||+..++.-+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 88999999999999999987654
No 415
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.66 E-value=0.083 Score=45.76 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.4
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
..|+|.|.+|+|||||...+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999999864
No 416
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.66 E-value=0.076 Score=45.69 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.6
Q ss_pred EEEEeccCcchHHHHHHHHHhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.|+|.|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999864
No 417
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.66 E-value=0.14 Score=49.69 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=27.2
Q ss_pred CCceEEEEe-ccCcchHHHHHHHHHhhhcccccceEEE
Q 042739 209 HDARIVGIW-GMGGIGKTTIASVVFHQISRYFQGNCFM 245 (505)
Q Consensus 209 ~~~~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (505)
.+.++|+|+ |-||+||||+|..++..+......+..+
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlli 178 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYL 178 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence 346777777 5999999999999998876653333333
No 418
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.62 E-value=0.11 Score=50.38 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=23.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
...++|+|+.|+|||||++.++..+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999876543
No 419
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.62 E-value=0.091 Score=44.58 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=21.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...|+|.|.+|+|||||+..+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999999864
No 420
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=91.61 E-value=0.089 Score=46.81 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.3
Q ss_pred EEEEeccCcchHHHHHHHHHhh
Q 042739 213 IVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
-|+|.|.+|+|||+|+.++...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4678999999999999999864
No 421
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.61 E-value=0.085 Score=45.11 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.-.|+|.|.+|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446789999999999999999864
No 422
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.60 E-value=0.12 Score=43.91 Aligned_cols=25 Identities=20% Similarity=0.464 Sum_probs=21.7
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
....|+|.|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457889999999999999999865
No 423
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.57 E-value=0.13 Score=51.66 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=23.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..+|.++|++|+||||+++.++..+.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46889999999999999999998754
No 424
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.54 E-value=0.12 Score=43.38 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999764
No 425
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.53 E-value=0.1 Score=45.75 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=20.7
Q ss_pred echhhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhh
Q 042739 192 GINSRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 192 GR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
|+..-.+.+.+.... ...-.|+|.|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~m~~~~~~--~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQ--GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -------------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcccchhHHHhHhhc--CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 344444444443322 23456789999999999999999864
No 426
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.52 E-value=0.12 Score=45.97 Aligned_cols=27 Identities=22% Similarity=0.505 Sum_probs=24.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
...|+|.|+.|+||||++..++..+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999998765
No 427
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.50 E-value=0.093 Score=45.18 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.--|+|.|.+|+|||||+..+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999864
No 428
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=91.50 E-value=0.23 Score=46.59 Aligned_cols=37 Identities=27% Similarity=0.264 Sum_probs=27.7
Q ss_pred CCceEEEEecc-CcchHHHHHHHHHhhhcccccceEEE
Q 042739 209 HDARIVGIWGM-GGIGKTTIASVVFHQISRYFQGNCFM 245 (505)
Q Consensus 209 ~~~~~v~I~G~-~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (505)
...++|+|+|. ||+||||+|..++..+......+..+
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 44678888886 89999999999998876543334444
No 429
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.49 E-value=0.25 Score=45.56 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=33.2
Q ss_pred hHHHHHHhhhc--cCCCceEEEEecc-CcchHHHHHHHHHhhhcccccceEEEe
Q 042739 196 RIEEIKSLLCL--ESHDARIVGIWGM-GGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 196 el~~l~~~L~~--~~~~~~~v~I~G~-~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
.+..|+..|.. .....++|+|+|. ||+||||+|..++..+......+..+.
T Consensus 65 a~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 65 KFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp HHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 34445444432 2234678888865 899999999999988765433444443
No 430
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.48 E-value=0.071 Score=46.45 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.6
Q ss_pred ceEEEEeccCcchHHHHHHHHH
Q 042739 211 ARIVGIWGMGGIGKTTIASVVF 232 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~ 232 (505)
.-.|+|.|.+|+|||+|+..+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999999999985
No 431
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.45 E-value=0.096 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.5
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
..+++|.|+.|+|||||.+.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcC
Confidence 468999999999999999999864
No 432
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.43 E-value=0.096 Score=45.29 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.--|+|.|.+|+|||||+..+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999999864
No 433
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.42 E-value=0.092 Score=46.51 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=19.6
Q ss_pred eEEEEeccCcchHHHHHHHHHh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFH 233 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~ 233 (505)
--|+|.|.+|+|||+|..++..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4688999999999999999874
No 434
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=91.38 E-value=0.27 Score=48.19 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=22.5
Q ss_pred CceEEEEe-ccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIW-GMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~-G~~GiGKTtLa~~~~~~~~ 236 (505)
..++|+|+ |-||+||||+|..++..+.
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La 134 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMR 134 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHH
Confidence 45666665 8899999999999998876
No 435
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.38 E-value=0.093 Score=44.50 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.0
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
-.|+|.|.+|+|||||+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999853
No 436
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.36 E-value=0.099 Score=44.85 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=20.2
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
--|+|.|.+|+|||||+..+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999864
No 437
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.35 E-value=0.63 Score=41.40 Aligned_cols=106 Identities=11% Similarity=0.034 Sum_probs=53.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEeecccccccccHHHHHHHHHHHHhCCCC--ccCCCCchHHHHhcc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMANVREESNKLGVIRVRDEVISQVLGENL--KVGTLTIPQNIKKGL 288 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~~~~~~~~l~~~l 288 (505)
..+..++|+-|.||||-+...+.+...+...++.+... .....+ ..+ .+.++.... ...... .+.+..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~--~D~Ryg-~~i----~sr~G~~~~a~~i~~~~---di~~~~ 88 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA--KDTRYS-SSF----CTHDRNTMEALPACLLR---DVAQEA 88 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEET--TCCCC----------------CEEEEESSGG---GGHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeec--CCccch-HHH----HhhcCCeeEEEecCCHH---HHHHHh
Confidence 56899999999999998888887765443333333311 112222 222 222211111 111111 122222
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHhcCcCCCCCCCEEEEEeCcc
Q 042739 289 QRMKVLIVLDDVHDEFTQLESLAGVIDRFSPGSRIIITTRDK 330 (505)
Q Consensus 289 ~~~~~LlVlDdv~~~~~~~~~l~~~l~~~~~~~~iliTsR~~ 330 (505)
+.--+|++|.++--.+ +..+...+. ..+..||+|.++.
T Consensus 89 -~~~dvViIDEaQF~~~-v~el~~~l~--~~gi~VI~~GL~~ 126 (234)
T 2orv_A 89 -LGVAVIGIDEGQFFPD-IVEFCEAMA--NAGKTVIVAALDG 126 (234)
T ss_dssp -TTCSEEEESSGGGCTT-HHHHHHHHH--HTTCEEEEECCSB
T ss_pred -ccCCEEEEEchhhhhh-HHHHHHHHH--hCCCEEEEEeccc
Confidence 2234999999962112 444443333 2677999999983
No 438
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.33 E-value=0.1 Score=44.66 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.0
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
--|+|.|.+|+|||||...+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998854
No 439
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.32 E-value=0.16 Score=51.84 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=28.2
Q ss_pred HHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 200 IKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 200 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
+...|..+-....+++|.|++|+|||||+..++......
T Consensus 270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 444443222335699999999999999999999765543
No 440
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.32 E-value=0.094 Score=44.91 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.--|+|.|.+|+|||+|+..+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999864
No 441
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.31 E-value=0.11 Score=44.89 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
.--|+|.|.+|+|||+|++.+......
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 346889999999999999666554433
No 442
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.30 E-value=0.1 Score=44.48 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=20.0
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
--|+|.|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999998864
No 443
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.26 E-value=0.085 Score=45.24 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=19.4
Q ss_pred EEEeccCcchHHHHHHHHHhh
Q 042739 214 VGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 214 v~I~G~~GiGKTtLa~~~~~~ 234 (505)
+.|+|.+|+|||++|.+++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 679999999999999999866
No 444
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.25 E-value=0.13 Score=53.17 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=24.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
...+|.|+|++|+||||+|+.++..+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998863
No 445
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.24 E-value=0.1 Score=45.30 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.--|+|.|.+|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999999864
No 446
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.22 E-value=0.1 Score=44.39 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.--|+|.|.+|+|||||+..+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999999864
No 447
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.20 E-value=0.11 Score=44.53 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...|+|.|.+|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 346889999999999999999864
No 448
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.19 E-value=0.1 Score=45.06 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=20.5
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
--|+|.|.+|+|||+|+..+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 46789999999999999999865
No 449
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.18 E-value=0.11 Score=44.25 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.-.|+|.|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346889999999999999999864
No 450
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=91.16 E-value=0.97 Score=46.02 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=21.2
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhc
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..+.|.|..|.|||+++..+...+.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999998877654
No 451
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.14 E-value=0.11 Score=44.03 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=21.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
..--|+|.|.+|+|||||+..+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999998753
No 452
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.09 E-value=0.11 Score=44.80 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.-.|+|.|.+|+|||+|...+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999999864
No 453
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.09 E-value=0.099 Score=44.58 Aligned_cols=24 Identities=21% Similarity=0.446 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...|+|.|.+|+|||||+..+...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457889999999999999999853
No 454
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.07 E-value=0.086 Score=46.03 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=19.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFH 233 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~ 233 (505)
...|+|.|.+|+|||||...+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999999875
No 455
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.05 E-value=0.22 Score=44.95 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=22.9
Q ss_pred ceEEEEe-ccCcchHHHHHHHHHhhhccc
Q 042739 211 ARIVGIW-GMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 211 ~~~v~I~-G~~GiGKTtLa~~~~~~~~~~ 238 (505)
.++|+|+ +-||+||||+|..++..+...
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~ 32 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQE 32 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhC
Confidence 4566665 679999999999999988765
No 456
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.05 E-value=0.1 Score=45.70 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.-.|+|.|.+|+|||||+..+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999999864
No 457
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=91.04 E-value=0.2 Score=48.45 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=26.7
Q ss_pred eEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
+++.+.|.||+||||+|..++..+......+..+.
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd 37 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAG 37 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Confidence 57889999999999999999987655433344443
No 458
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.04 E-value=0.11 Score=45.13 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.-.|+|.|.+|+|||||+..+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999999875
No 459
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.03 E-value=0.1 Score=45.84 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.--|+|.|.+|+|||+|+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999874
No 460
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.02 E-value=0.11 Score=50.63 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=22.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...+++|.|+.|+|||||++.++--
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4568999999999999999998864
No 461
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.99 E-value=0.071 Score=46.89 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.1
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
....++|.|++|+|||||...+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999887643
No 462
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.96 E-value=0.11 Score=45.75 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...|+|.|.+|+|||+|...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446889999999999999999864
No 463
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.95 E-value=0.11 Score=45.26 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...|+|.|.+|+|||||+..+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999864
No 464
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.94 E-value=0.11 Score=45.34 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...|+|.|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457889999999999999999864
No 465
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=90.93 E-value=0.27 Score=47.30 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=27.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhc--ccccceEEE
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQIS--RYFQGNCFM 245 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~ 245 (505)
...+++..|-||+||||+|..++..+. .....+..+
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLv 54 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLI 54 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 356788889999999999999998877 543334443
No 466
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.92 E-value=0.12 Score=44.62 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.--|+|.|.+|+|||||+..+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999864
No 467
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.92 E-value=0.12 Score=44.73 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.--|+|.|.+|+|||+|...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999999864
No 468
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.90 E-value=0.12 Score=44.83 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.--|+|.|.+|+|||+|...+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999999874
No 469
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.90 E-value=0.11 Score=45.30 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.--|+|.|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999864
No 470
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.89 E-value=0.21 Score=42.80 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=21.5
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
..-.|+|.|.+|+|||+|...+...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3567889999999999999999853
No 471
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.88 E-value=0.11 Score=44.97 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.--|+|.|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999999864
No 472
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=90.88 E-value=0.14 Score=45.70 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=23.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhc
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQIS 236 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 236 (505)
..+|+|.|+.|+||||+++.++.++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999864
No 473
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.87 E-value=0.21 Score=43.40 Aligned_cols=29 Identities=14% Similarity=-0.080 Sum_probs=24.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
..++.+++|+.|.||||.+...+++...+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~ 35 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIA 35 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35799999999999999999999886543
No 474
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.81 E-value=0.12 Score=44.52 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...|+|.|.+|+|||+|...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999854
No 475
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=90.80 E-value=0.19 Score=52.10 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=25.4
Q ss_pred CCceEEEEeccCcchHHHHHHHHHhhhccc
Q 042739 209 HDARIVGIWGMGGIGKTTIASVVFHQISRY 238 (505)
Q Consensus 209 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 238 (505)
+..+++.+.|.||+||||+|..++..+...
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~ 35 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQ 35 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHC
Confidence 346788999999999999999999876554
No 476
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.76 E-value=0.11 Score=45.25 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.2
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
..-|+|.|.+|+|||||+..+...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 456889999999999999999864
No 477
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.69 E-value=0.12 Score=44.90 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
..-|+|.|.+|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 457889999999999999999864
No 478
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.66 E-value=0.13 Score=44.55 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=21.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.-.|+|.|.+|+|||||+..+...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999999864
No 479
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.65 E-value=0.14 Score=44.42 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=21.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
....|+|.|.+|+|||+|...+...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998764
No 480
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.63 E-value=0.45 Score=47.44 Aligned_cols=25 Identities=36% Similarity=0.292 Sum_probs=19.7
Q ss_pred ceEEEEeccCcchHHHHHH-HHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIAS-VVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~-~~~~~~ 235 (505)
.+.++|.|.+|+|||+||. .+++..
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~ 187 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQK 187 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhh
Confidence 4577899999999999965 555554
No 481
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.59 E-value=0.11 Score=44.51 Aligned_cols=24 Identities=33% Similarity=0.263 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.-.|+|.|.+|+|||+|...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999864
No 482
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.58 E-value=0.38 Score=50.27 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=30.8
Q ss_pred hhHHHHHHhhhccCCCceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 195 SRIEEIKSLLCLESHDARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 195 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
...+.+...+. .+...|+|++|.|||+++..+...+.......+.+.
T Consensus 184 ~Q~~av~~~l~-----~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~ 230 (624)
T 2gk6_A 184 SQVYAVKTVLQ-----RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 230 (624)
T ss_dssp HHHHHHHHHHT-----CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred HHHHHHHHHhc-----CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 44445555552 247789999999999998888876544223344444
No 483
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.56 E-value=0.12 Score=45.05 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=20.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.--|+|.|.+|+|||+|...+...
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999999854
No 484
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.54 E-value=0.13 Score=49.73 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=26.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
...++|+|+.|+|||||++.++..+... ...+.+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie 209 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIE 209 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEEC
Confidence 4589999999999999999998876432 3344443
No 485
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=90.53 E-value=0.19 Score=45.96 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=26.2
Q ss_pred CceEEEEe-ccCcchHHHHHHHHHhhhcccccceEEE
Q 042739 210 DARIVGIW-GMGGIGKTTIASVVFHQISRYFQGNCFM 245 (505)
Q Consensus 210 ~~~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (505)
..++|+|+ +-||+||||+|..++..+......+..+
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 41 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLV 41 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEE
Confidence 35677776 7899999999999998876543333333
No 486
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.53 E-value=0.13 Score=44.33 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.5
Q ss_pred eEEEEeccCcchHHHHHHHHHhh
Q 042739 212 RIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 212 ~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
-.|+|.|.+|+|||+|+..+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999864
No 487
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.52 E-value=0.14 Score=48.11 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.6
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
...|+|.|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 458999999999999999999864
No 488
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.48 E-value=0.19 Score=48.21 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=24.2
Q ss_pred CceEEEEeccCcchHHHHHHHHHhhhcc
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQISR 237 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 237 (505)
....++|.|+.|+|||||++.++.....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3568999999999999999999987654
No 489
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.47 E-value=0.11 Score=45.25 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=20.3
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.--|+|.|.+|+|||||+..+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999999753
No 490
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.46 E-value=0.11 Score=44.59 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=21.4
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
....|+|.|.+|+|||+|...+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999999864
No 491
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.42 E-value=0.14 Score=45.72 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=21.6
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
....|+|.|.+|+|||||+..+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567889999999999999999864
No 492
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.36 E-value=0.12 Score=44.96 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=19.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.--|+|.|.+|+|||+|+..+...
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 346789999999999999877664
No 493
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.33 E-value=0.12 Score=44.81 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=20.1
Q ss_pred ceEEEEeccCcchHHHHHHHHHh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFH 233 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~ 233 (505)
.-.|+|.|.+|+|||+|+..+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999999864
No 494
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=90.26 E-value=0.15 Score=48.21 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=22.0
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
....|+|+|.+|+|||||...+...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 4568999999999999999999864
No 495
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.26 E-value=0.11 Score=48.74 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=18.5
Q ss_pred EEEEeccCcchHHHHHHHHHh
Q 042739 213 IVGIWGMGGIGKTTIASVVFH 233 (505)
Q Consensus 213 ~v~I~G~~GiGKTtLa~~~~~ 233 (505)
-|+|.|++|+|||||...++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 458999999999999999764
No 496
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=90.25 E-value=0.4 Score=44.56 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=33.1
Q ss_pred hhHHHHHHhhhc--cCCCceEEEEec-cCcchHHHHHHHHHhhhcccccceEEEe
Q 042739 195 SRIEEIKSLLCL--ESHDARIVGIWG-MGGIGKTTIASVVFHQISRYFQGNCFMA 246 (505)
Q Consensus 195 ~el~~l~~~L~~--~~~~~~~v~I~G-~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 246 (505)
+.+..|+..|.. .....++|+|+| .||+||||+|..++..+......++.+.
T Consensus 74 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 74 EAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 344555554432 223456777765 5899999999999988776544444443
No 497
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.24 E-value=0.13 Score=44.92 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchHHHHHHHHHhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
.--|+|.|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999864
No 498
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.22 E-value=0.16 Score=45.73 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=21.8
Q ss_pred CceEEEEeccCcchHHHHHHHHHhh
Q 042739 210 DARIVGIWGMGGIGKTTIASVVFHQ 234 (505)
Q Consensus 210 ~~~~v~I~G~~GiGKTtLa~~~~~~ 234 (505)
....|+|.|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 3567899999999999999999864
No 499
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.21 E-value=0.18 Score=41.84 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchHHHHHHHHHhhh
Q 042739 211 ARIVGIWGMGGIGKTTIASVVFHQI 235 (505)
Q Consensus 211 ~~~v~I~G~~GiGKTtLa~~~~~~~ 235 (505)
..+.+|+|+.|.|||+|...++.-+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999998887643
No 500
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.18 E-value=0.35 Score=42.56 Aligned_cols=30 Identities=23% Similarity=0.112 Sum_probs=23.2
Q ss_pred EEeccCcchHHHHHHHHHhhhcccccceEEE
Q 042739 215 GIWGMGGIGKTTIASVVFHQISRYFQGNCFM 245 (505)
Q Consensus 215 ~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 245 (505)
+..+-||+||||++..++..+.... .+..+
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g-~Vlli 34 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG-ETLLI 34 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS-CEEEE
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC-CEEEE
Confidence 3468999999999999999887665 44444
Done!