Your job contains 1 sequence.
>042741
MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID
KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGVCGPMKYALMSPRRMPTYRHVSGKKSF
FSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLKREYLVFGRAKGESI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 042741
(166 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2130060 - symbol:NRPE7 species:3702 "Arabidops... 216 9.5e-18 1
TAIR|locus:2084573 - symbol:NRPD7 species:3702 "Arabidops... 209 5.3e-17 1
TAIR|locus:2168514 - symbol:NRPB7 species:3702 "Arabidops... 107 6.1e-05 1
>TAIR|locus:2130060 [details] [associations]
symbol:NRPE7 species:3702 "Arabidopsis thaliana"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0000419
"DNA-directed RNA polymerase V complex" evidence=IPI]
InterPro:IPR005576 Pfam:PF03876 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899 GO:GO:0000419
Gene3D:3.30.1490.120 SUPFAM:SSF88798 EMBL:BT030624 IPI:IPI00536833
RefSeq:NP_193202.2 UniGene:At.49694 ProteinModelPortal:A6QRA1
STRING:A6QRA1 PaxDb:A6QRA1 PRIDE:A6QRA1 EnsemblPlants:AT4G14660.1
GeneID:827116 KEGG:ath:AT4G14660 TAIR:At4g14660 eggNOG:NOG264504
HOGENOM:HOG000241228 InParanoid:A6QRA1 KO:K16253 OMA:KVQLPWN
PhylomeDB:A6QRA1 ProtClustDB:CLSN2688679 Genevestigator:A6QRA1
Uniprot:A6QRA1
Length = 178
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 54/176 (30%), Positives = 94/176 (53%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF +V+L ++ +PA+++D L + +R + LLE + ++KA K+ GY+++VT I
Sbjct: 1 MFLKVQLPWNVMIPAENMDAKGLML-KRAILVELLEAFASKKATKELGYYVAVTTLDKIG 59
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV------------CGPMKYALMSPRRM 108
EG G V FPV+F TF KGEI+HGV CGP++ +S +M
Sbjct: 60 -EGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKM 118
Query: 109 PTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLKREYLVFGRAKGE 164
P Y+++ G+ F N++ +I V+ +V ++W ++RE+ +G+
Sbjct: 119 PDYKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWM----EVEREFQALASLEGD 170
>TAIR|locus:2084573 [details] [associations]
symbol:NRPD7 species:3702 "Arabidopsis thaliana"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0000418
"DNA-directed RNA polymerase IV complex" evidence=IPI]
InterPro:IPR005576 Pfam:PF03876 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899 GO:GO:0000418
Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000241228 KO:K16253
ProtClustDB:CLSN2688679 EMBL:AY085637 IPI:IPI00522501
RefSeq:NP_566719.1 UniGene:At.37797 ProteinModelPortal:Q8LE42
STRING:Q8LE42 PaxDb:Q8LE42 PRIDE:Q8LE42 EnsemblPlants:AT3G22900.1
GeneID:821862 KEGG:ath:AT3G22900 TAIR:At3g22900 eggNOG:NOG327805
InParanoid:Q8LE42 OMA:RIQIGAR PhylomeDB:Q8LE42
Genevestigator:Q8LE42 Uniprot:Q8LE42
Length = 174
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 56/178 (31%), Positives = 88/178 (49%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF +V+L D+ +PA+ +D + QR V RLLE + +KA KD GY ++ T ++I
Sbjct: 1 MFIKVKLPWDVTIPAEDMDTGLML--QRAIVIRLLEAFSKEKATKDLGYLITPTILENIG 58
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGVC------------GPMKYALMSPRRM 108
EG G + FPV+F F KGEI+HGV GP + +S +M
Sbjct: 59 -EGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKM 117
Query: 109 PTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLKREYLVFGRAKGESI 166
P Y + G+ FF N +I G V+F+V W R +++++ G+++
Sbjct: 118 PGYEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEW----REAEKDFMALASIDGDNL 171
>TAIR|locus:2168514 [details] [associations]
symbol:NRPB7 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IPI] [GO:0000394 "RNA splicing, via
endonucleolytic cleavage and ligation" evidence=RCA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=RCA]
InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006351 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AB016890
InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
GO:GO:0005665 EMBL:M90505 EMBL:BT005667 IPI:IPI00518175 PIR:A44457
RefSeq:NP_200726.1 UniGene:At.29242 ProteinModelPortal:P38421
SMR:P38421 STRING:P38421 PaxDb:P38421 PRIDE:P38421
EnsemblPlants:AT5G59180.1 GeneID:836036 KEGG:ath:AT5G59180
TAIR:At5g59180 eggNOG:COG1095 HOGENOM:HOG000158201
InParanoid:P38421 OMA:TRVDAND PhylomeDB:P38421
ProtClustDB:CLSN2686299 Genevestigator:P38421 GermOnline:AT5G59180
Gene3D:3.30.1490.120 SUPFAM:SSF88798 Uniprot:P38421
Length = 176
Score = 107 (42.7 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MFF + L R++ + + RN L+ V +L++ + HG+ +++T +I
Sbjct: 1 MFFHIVLERNMQLHPRFFGRN-LK---ENLVSKLMKD-VEGTCSGRHGFVVAITGIDTIG 55
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV 94
K G +G G V+FPV + C F P KGEIL V
Sbjct: 56 K-GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAV 88
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.140 0.430 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 166 166 0.00097 107 3 11 22 0.36 32
30 0.46 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 3
No. of states in DFA: 597 (63 KB)
Total size of DFA: 153 KB (2092 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.76u 0.18s 13.94t Elapsed: 00:00:00
Total cpu time: 13.76u 0.18s 13.94t Elapsed: 00:00:00
Start: Tue May 21 03:05:48 2013 End: Tue May 21 03:05:48 2013