BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042741
(166 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449432628|ref|XP_004134101.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449432630|ref|XP_004134102.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449504102|ref|XP_004162253.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449504105|ref|XP_004162254.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
Length = 190
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 109/177 (61%), Gaps = 14/177 (7%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF+EVEL+RD+ + + R+ QRY + LLE + +KA KDHGYFLSVT +SI
Sbjct: 1 MFYEVELVRDVEITVEKEKRDAHNF-QRYIITCLLENLLKEKANKDHGYFLSVTSLRSIG 59
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV------------CGPMKYALMSPRRM 108
K G N VSFP+ F+CRTFLP +GEILHGV CGP+KY +S R+M
Sbjct: 60 K-GIVKNESQCVSFPITFICRTFLPFEGEILHGVVRHIFQRGLLLKCGPIKYVFLSARKM 118
Query: 109 PTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLKREYLVFGRAKGES 165
PTY++V G+ FS+ + IGN VVV+F V VRW + +K+E+++ +G +
Sbjct: 119 PTYQYVGGENPVFSSKEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNN 175
>gi|224107919|ref|XP_002314653.1| predicted protein [Populus trichocarpa]
gi|222863693|gb|EEF00824.1| predicted protein [Populus trichocarpa]
Length = 189
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 110/178 (61%), Gaps = 14/178 (7%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF EVE+ + + A+++DRN L VPQR V LL+ ++ KA KDHGYFL+VT KSI
Sbjct: 1 MFGEVEVCSTVRIIAENLDRNGL-VPQRSIVTHLLKDLLSMKASKDHGYFLAVTNLKSIG 59
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV------------CGPMKYALMSPRRM 108
K G VN G V F V F CRTF+P+KGEIL GV CGP+KY +S R+M
Sbjct: 60 K-GEVVNKSGDVLFHVEFKCRTFMPMKGEILQGVVHRTFRHGVLLRCGPVKYIFLSARKM 118
Query: 109 PTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLKREYLVFGRAKGESI 166
P Y++ S + F ND+ +I N V+V+F V VRW + +++R++++ G+S+
Sbjct: 119 PNYQYTSEENPVFLNDELARIENNVLVRFSVLDVRWIEKMWDMRRDFMMLASLVGDSL 176
>gi|30682881|ref|NP_193188.2| DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]
gi|30682886|ref|NP_849385.1| DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]
gi|334186527|ref|NP_001190729.1| DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]
gi|38603938|gb|AAR24714.1| At4g14520 [Arabidopsis thaliana]
gi|44681416|gb|AAS47648.1| At4g14520 [Arabidopsis thaliana]
gi|110741153|dbj|BAE98669.1| hypothetical protein [Arabidopsis thaliana]
gi|332658054|gb|AEE83454.1| DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]
gi|332658055|gb|AEE83455.1| DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]
gi|332658056|gb|AEE83456.1| DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]
Length = 200
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 99/186 (53%), Gaps = 26/186 (13%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSI- 59
MF EVE+ RD+A+ AK ++ P + + RLL+ I++KAC++HG++L +T KSI
Sbjct: 1 MFSEVEMARDVAICAKHLNGQS---PHQPILCRLLQDLIHEKACREHGFYLGITALKSIG 57
Query: 60 -----DKEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV------------CGPMKYAL 102
+ + + +++FPV F CRTFLP +G+IL G GP++YA
Sbjct: 58 NNKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAY 117
Query: 103 MSPRRMPTYRHVSG-----KKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLKREYLV 157
+S +MP Y +V +K F D KI GVVV+F V AVR+ + +Y V
Sbjct: 118 LSLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYV 177
Query: 158 FGRAKG 163
+G
Sbjct: 178 LATLEG 183
>gi|225432916|ref|XP_002284221.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Vitis
vinifera]
gi|147822056|emb|CAN61549.1| hypothetical protein VITISV_043525 [Vitis vinifera]
Length = 177
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 93/164 (56%), Gaps = 14/164 (8%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF +V+L ++ +PA+ +D L + QR + RLL+ + N+KA ++ GYFL+VT ++I
Sbjct: 1 MFLKVQLPWNVIIPAECLDAKGLML-QRSIIIRLLDAFSNKKATQELGYFLAVTTLENIG 59
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV------------CGPMKYALMSPRRM 108
EG G V FPV+F C TF +GEIL GV CGP++ +S ++M
Sbjct: 60 -EGKVRQHSGDVLFPVVFSCVTFKLFRGEILDGVVHKVLKHGVILRCGPVENIYLSCQKM 118
Query: 109 PTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLK 152
P YR+V G+ F N++ KI VVV+F+V +W R +
Sbjct: 119 PDYRYVPGENPVFLNEKLSKIEKDVVVRFIVMGTKWLEAEREFQ 162
>gi|297737162|emb|CBI26363.3| unnamed protein product [Vitis vinifera]
Length = 242
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 93/164 (56%), Gaps = 14/164 (8%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF +V+L ++ +PA+ +D L + QR + RLL+ + N+KA ++ GYFL+VT ++I
Sbjct: 66 MFLKVQLPWNVIIPAECLDAKGLML-QRSIIIRLLDAFSNKKATQELGYFLAVTTLENIG 124
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV------------CGPMKYALMSPRRM 108
EG G V FPV+F C TF +GEIL GV CGP++ +S ++M
Sbjct: 125 -EGKVRQHSGDVLFPVVFSCVTFKLFRGEILDGVVHKVLKHGVILRCGPVENIYLSCQKM 183
Query: 109 PTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLK 152
P YR+V G+ F N++ KI VVV+F+V +W R +
Sbjct: 184 PDYRYVPGENPVFLNEKLSKIEKDVVVRFIVMGTKWLEAEREFQ 227
>gi|449465372|ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449522228|ref|XP_004168129.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
Length = 175
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 92/164 (56%), Gaps = 15/164 (9%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF +V+L ++ +PA+++D L + QR + RLL+ + +KA KD GYFL+VT ++I
Sbjct: 1 MFLKVQLPWNVIIPAENLDAKGLML-QRSIIIRLLDEFATKKATKDLGYFLAVTTLENIG 59
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV------------CGPMKYALMSPRRM 108
EG V G V FPVIF TF +GEIL GV CGP++ +S +M
Sbjct: 60 -EG-KVRQTGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKM 117
Query: 109 PTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLK 152
P YR+V G+ F ND+ KI VVV+F+V +W R +
Sbjct: 118 PDYRYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQ 161
>gi|2244808|emb|CAB10231.1| hypothetical protein [Arabidopsis thaliana]
gi|7268158|emb|CAB78494.1| hypothetical protein [Arabidopsis thaliana]
Length = 194
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 26/181 (14%)
Query: 7 LLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSI------D 60
+ RD+A+ AK ++ P + + RLL+ I++KAC++HG++L +T KSI +
Sbjct: 1 MARDVAICAKHLNGQS---PHQPILCRLLQDLIHEKACREHGFYLGITALKSIGNNKNNN 57
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV------------CGPMKYALMSPRRM 108
+ + +++FPV F CRTFLP +G+IL G GP++YA +S +M
Sbjct: 58 IDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYLSLLKM 117
Query: 109 PTYRHVSG-----KKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLKREYLVFGRAKG 163
P Y +V +K F D KI GVVV+F V AVR+ + +Y V +G
Sbjct: 118 PHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYVLATLEG 177
Query: 164 E 164
Sbjct: 178 N 178
>gi|224102153|ref|XP_002312568.1| predicted protein [Populus trichocarpa]
gi|222852388|gb|EEE89935.1| predicted protein [Populus trichocarpa]
Length = 176
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 14/164 (8%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF +V+L ++ +PA+++D L + QR V RLL+ + + A KD GY+L+V+ +SI
Sbjct: 1 MFLKVQLPWNVIIPAENLDAKGLML-QRSIVVRLLDDFAKKGATKDLGYYLAVSTLESIG 59
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV------------CGPMKYALMSPRRM 108
EG G V FPV+F TF +GEIL G+ CGP++ +S +M
Sbjct: 60 -EGKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYLSCMKM 118
Query: 109 PTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLK 152
P YR+V G+ F ND+ KI VVV+F+V +W R +
Sbjct: 119 PDYRYVPGENPVFLNDKTSKIEKDVVVRFVVLGTKWLEAEREFQ 162
>gi|297804848|ref|XP_002870308.1| hypothetical protein ARALYDRAFT_493454 [Arabidopsis lyrata subsp.
lyrata]
gi|297316144|gb|EFH46567.1| hypothetical protein ARALYDRAFT_493454 [Arabidopsis lyrata subsp.
lyrata]
Length = 194
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 26/176 (14%)
Query: 7 LLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSI------D 60
+ RD+A+ A ++ + P + RLL+ I++KAC++HG++L +T KSI +
Sbjct: 1 MARDVAICANHLNG---QAPHHQILGRLLKDLIHEKACREHGFYLGITALKSIGNNKNNN 57
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV------------CGPMKYALMSPRRM 108
E + +++FPV F CRTFLP +G+IL G GP++YA +S +M
Sbjct: 58 DENKDNHQAHLLTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYLSFLKM 117
Query: 109 PTYRHVSG-----KKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLKREYLVFG 159
P Y +V +K +F D KI GVVV+F V AVR+ + + +Y V
Sbjct: 118 PDYHYVHSPLLEDEKPYFQKDDLSKIAVGVVVRFGVLAVRFKEKPHKRRNDYYVLA 173
>gi|255563208|ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
gi|223538083|gb|EEF39694.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
Length = 176
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 89/164 (54%), Gaps = 14/164 (8%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
M+ +V+L ++ + A+ +D L + QR + RLLE + ++KA KD GY+L+VT +SI
Sbjct: 1 MYLKVQLPWNVIISAEHLDAKGLML-QRSIIIRLLEDFASKKATKDLGYYLAVTTLESIG 59
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV------------CGPMKYALMSPRRM 108
EG G V FPV+F TF +GEIL GV CGP++ +S +M
Sbjct: 60 -EGKVREHTGDVLFPVVFNGITFKIFRGEILEGVVHKVLKHGVFIRCGPIENIYLSCMKM 118
Query: 109 PTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLK 152
P Y +V G+ F ND+ KI VVV+F+V +W R +
Sbjct: 119 PDYHYVPGENPVFLNDKTSKIEKDVVVRFIVIGTKWLEAEREFQ 162
>gi|351724841|ref|NP_001238607.1| uncharacterized protein LOC100527862 [Glycine max]
gi|255633396|gb|ACU17055.1| unknown [Glycine max]
Length = 180
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 86/164 (52%), Gaps = 14/164 (8%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF +V+L ++ + A+++ L + R + RLL + +KA KD GYFL+VT + I
Sbjct: 1 MFLKVQLHWNVIIAAENLQPEGLML-HRAIIVRLLSDFAVKKATKDLGYFLAVTTLEKIG 59
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV------------CGPMKYALMSPRRM 108
EG G V FPV+F TF KGEIL GV CGP++ +S +M
Sbjct: 60 -EGKVRQHTGDVLFPVVFNVITFKFFKGEILEGVVHKVLKHGVFMRCGPIENVYLSNLKM 118
Query: 109 PTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLK 152
P YR+V G+ + F ND+ KIG V V+F V +W R +
Sbjct: 119 PDYRYVPGENACFMNDKMSKIGKDVTVRFSVIGTKWMEAEREFQ 162
>gi|118487294|gb|ABK95475.1| unknown [Populus trichocarpa]
Length = 176
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 88/164 (53%), Gaps = 14/164 (8%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF +V+L ++ +PA+++D L + QR V LL + ++A KD GY+L+V+ +SI
Sbjct: 1 MFLKVQLPWNVIIPAENLDAKGLML-QRSIVVCLLADFAKKRATKDLGYYLAVSTLESIG 59
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV------------CGPMKYALMSPRRM 108
EG G V FPV+F TF KGEIL GV CGP++ +S +M
Sbjct: 60 -EGKVRQHTGDVLFPVVFSGITFKIFKGEILEGVVHKVLKHGVLLRCGPIENIYLSSMKM 118
Query: 109 PTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLK 152
YR+V G+ F ND+ KI VVV+F+V +W R +
Sbjct: 119 LDYRYVPGENPVFLNDKTSKIEKDVVVRFVVLGTKWLEAEREFQ 162
>gi|224107923|ref|XP_002314654.1| predicted protein [Populus trichocarpa]
gi|222863694|gb|EEF00825.1| predicted protein [Populus trichocarpa]
Length = 193
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 88/164 (53%), Gaps = 14/164 (8%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF +V+L ++ +PA+++D L + QR V LL + ++A KD GY+L+V+ +SI
Sbjct: 18 MFLKVQLPWNVIIPAENLDAKGLML-QRSIVVCLLADFAKKRATKDLGYYLAVSTLESIG 76
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV------------CGPMKYALMSPRRM 108
EG G V FPV+F TF KGEIL GV CGP++ +S +M
Sbjct: 77 -EGKVRQHTGDVLFPVVFSGITFKIFKGEILEGVVHKVLKHGVLLRCGPIENIYLSSMKM 135
Query: 109 PTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLK 152
YR+V G+ F ND+ KI VVV+F+V +W R +
Sbjct: 136 LDYRYVPGENPVFLNDKTSKIEKDVVVRFVVLGTKWLEAEREFQ 179
>gi|388504534|gb|AFK40333.1| unknown [Lotus japonicus]
Length = 180
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 18/166 (10%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF +V+L ++ + A+++ + L + QR + RLL + ++A KD GYF +VT ++D
Sbjct: 1 MFLKVQLSWNVIIAAENLQQGSLML-QRAILIRLLGDFAAKRATKDLGYFTAVT---TLD 56
Query: 61 K--EGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV------------CGPMKYALMSPR 106
K EG G V FPV+F TF KGEIL GV CGP+++ +S
Sbjct: 57 KVGEGKVRQHTGDVLFPVVFNGVTFKLFKGEILEGVVHKVLKHGVFLRCGPIEHVYLSNM 116
Query: 107 RMPTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLK 152
+M YR+ G+ ++F N++ KI V ++F+V +W R +
Sbjct: 117 KMADYRYFPGENAYFMNEKASKIAKDVTIRFVVIGTKWMEAEREFQ 162
>gi|42566796|ref|NP_193202.2| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
gi|149944323|gb|ABR46204.1| At4g14660 [Arabidopsis thaliana]
gi|332658072|gb|AEE83472.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
Length = 178
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 98/180 (54%), Gaps = 22/180 (12%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF +V+L ++ +PA+++D L + +R + LLE + ++KA K+ GY+++VT ++D
Sbjct: 1 MFLKVQLPWNVMIPAENMDAKGLML-KRAILVELLEAFASKKATKELGYYVAVT---TLD 56
Query: 61 K--EGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV------------CGPMKYALMSPR 106
K EG G V FPV+F TF KGEI+HGV CGP++ +S
Sbjct: 57 KIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYT 116
Query: 107 RMPTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLKREYLVFGRAKGESI 166
+MP Y+++ G+ F N++ +I V+ +V ++W ++RE+ +G+ +
Sbjct: 117 KMPDYKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKW----MEVEREFQALASLEGDYL 172
>gi|388498028|gb|AFK37080.1| unknown [Medicago truncatula]
Length = 180
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 87/166 (52%), Gaps = 18/166 (10%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF +V+L ++ + A+++ L + QR + RLL + +KA KD GYFL+VT ++D
Sbjct: 1 MFLKVQLPWNVIIAAENLKPGSLML-QRAILIRLLSDFAAKKATKDMGYFLAVT---TLD 56
Query: 61 K--EGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGVC------------GPMKYALMSPR 106
K EG G V FPV+F TF KGE+L GV GP++ A +S
Sbjct: 57 KIGEGKVRQHTGDVLFPVVFNAVTFKIFKGEVLEGVVHKVLKHGVFMRIGPIENAYLSSS 116
Query: 107 RMPTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLK 152
+MP Y +V G+ +F N + PKI V V+ +V +W R +
Sbjct: 117 KMPGYVYVLGENPYFMNQKMPKIAKDVKVRVVVIGTKWMEAEREFQ 162
>gi|297800772|ref|XP_002868270.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
gi|297314106|gb|EFH44529.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
Length = 178
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 22/180 (12%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF +V+L ++ +PA+++D L + +R + LL+ + ++KA K+ GY+++VT ++D
Sbjct: 1 MFLKVQLPWNVMIPAENMDAKGL-ILKRAILVELLDAFASKKATKELGYYVAVT---TLD 56
Query: 61 K--EGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV------------CGPMKYALMSPR 106
K EG G V FPV+F TF KGEI+HGV CGP++ +S
Sbjct: 57 KIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYT 116
Query: 107 RMPTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLKREYLVFGRAKGESI 166
+MP Y++V G+ F N++ +I V+ +V ++W +RE+ +G+ +
Sbjct: 117 KMPDYKYVPGENPIFMNEKTSRIQVETTVRVVVIGIKW----MEAEREFQALASLEGDYL 172
>gi|217074784|gb|ACJ85752.1| unknown [Medicago truncatula]
Length = 180
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 18/166 (10%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF +V+L ++ + A+++ L + QR + RLL + +KA KD GYFL+VT ++D
Sbjct: 1 MFLKVQLPWNVIIAAENLKPGSLML-QRAILIRLLSDFAAKKATKDMGYFLAVT---TLD 56
Query: 61 K--EGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGVC------------GPMKYALMSPR 106
K EG G V FPV+F TF KGE+L GV GP++ A +S
Sbjct: 57 KIGEGKVRQHTGDVLFPVVFNAVTFKIFKGEVLEGVVHKVLKHGVFMRIGPIENAYLSSS 116
Query: 107 RMPTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLK 152
+MP Y +V G+ +F N + PKI V + +V +W R +
Sbjct: 117 KMPGYVYVLGENPYFMNQKMPKIAKDVKARVVVIGTKWMEAEREFQ 162
>gi|18403570|ref|NP_566719.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
gi|21553765|gb|AAM62858.1| RNA polymerase II fifth largest subunit-like protein [Arabidopsis
thaliana]
gi|332643168|gb|AEE76689.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
Length = 174
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 19/178 (10%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF +V+L D+ +PA+ +D + QR V RLLE + +KA KD GY ++ T ++I
Sbjct: 1 MFIKVKLPWDVTIPAEDMDTGLML--QRAIVIRLLEAFSKEKATKDLGYLITPTILENIG 58
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGVC------------GPMKYALMSPRRM 108
EG G + FPV+F F KGEI+HGV GP + +S +M
Sbjct: 59 -EGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKM 117
Query: 109 PTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLKREYLVFGRAKGESI 166
P Y + G+ FF N +I G V+F+V W R +++++ G+++
Sbjct: 118 PGYEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEW----REAEKDFMALASIDGDNL 171
>gi|242086985|ref|XP_002439325.1| hypothetical protein SORBIDRAFT_09g004460 [Sorghum bicolor]
gi|241944610|gb|EES17755.1| hypothetical protein SORBIDRAFT_09g004460 [Sorghum bicolor]
Length = 175
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 15/164 (9%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
+F E E+ ++ + +DR L + ++ + RLLE N++A K+HGY+++V++ K+I
Sbjct: 2 VFLEAEMSWNVLISPSQLDRKGL-LLRKAIIVRLLEDVTNRRASKEHGYYVAVSQLKAI- 59
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEIL---------HGV---CGPMKYALMSPRRM 108
EG G V FPV F C T P+KGE++ HGV GP++ ++ + M
Sbjct: 60 SEGKVRELTGDVLFPVSFTCITLKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM 119
Query: 109 PTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLK 152
Y+++ G+ + F ND K+ V+F V RW R +
Sbjct: 120 SDYKYIGGENAMFMNDHS-KLEKDTAVRFKVLGFRWMEADRQFQ 162
>gi|297831004|ref|XP_002883384.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
gi|297329224|gb|EFH59643.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
Length = 174
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 19/178 (10%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF +V+L D+ +PA+ +D + QR V RLLE + +KA KD GY ++ T ++I
Sbjct: 1 MFIKVKLPWDVTIPAEDMDTGLML--QRAIVIRLLEAFGTKKATKDLGYLITPTILENIG 58
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGVC------------GPMKYALMSPRRM 108
EG G + FPV+F F KGE++HGV GP + +S +M
Sbjct: 59 -EGKIKEQTGEIQFPVVFNGICFKMFKGEVVHGVVQKVHKSGVFLRSGPYEIIYLSHVKM 117
Query: 109 PTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLKREYLVFGRAKGESI 166
P Y + G+K F N +I G V+F+V W R +++++ G+++
Sbjct: 118 PGYEFIPGEKPIFMNQNMSRIQIGARVRFIVLDTEW----REAEKDFMALASIDGDNL 171
>gi|226493930|ref|NP_001150375.1| LOC100284005 [Zea mays]
gi|194705372|gb|ACF86770.1| unknown [Zea mays]
gi|195638760|gb|ACG38848.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|195658229|gb|ACG48582.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|413944600|gb|AFW77249.1| DNA-directed RNA polymerase II polypeptide isoform 1 [Zea mays]
gi|413944601|gb|AFW77250.1| DNA-directed RNA polymerase II polypeptide isoform 2 [Zea mays]
gi|413944602|gb|AFW77251.1| DNA-directed RNA polymerase II polypeptide isoform 3 [Zea mays]
Length = 175
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 15/164 (9%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
+F E E+ ++ + +DR L + ++ + RLLE N++A K+HGY+++V + K+I
Sbjct: 2 VFLEAEMSWNVLISPSQLDRKGL-LLRKAIIVRLLEDVTNRRASKEHGYYIAVNQLKAIS 60
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEIL---------HGV---CGPMKYALMSPRRM 108
EG G V FPV F C T P+KGE++ HGV GP++ ++ + M
Sbjct: 61 -EGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM 119
Query: 109 PTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLK 152
Y+++ G+ + F ND K+ V+F V RW R +
Sbjct: 120 SNYKYIGGENAMFMND-HSKLEKDTAVRFKVLGFRWMEADRQFQ 162
>gi|115462207|ref|NP_001054703.1| Os05g0157100 [Oryza sativa Japonica Group]
gi|45267865|gb|AAS55764.1| putative RNA polymerase II [Oryza sativa Japonica Group]
gi|113578254|dbj|BAF16617.1| Os05g0157100 [Oryza sativa Japonica Group]
gi|125550915|gb|EAY96624.1| hypothetical protein OsI_18537 [Oryza sativa Indica Group]
gi|215692867|dbj|BAG88287.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630264|gb|EEE62396.1| hypothetical protein OsJ_17187 [Oryza sativa Japonica Group]
Length = 175
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 15/164 (9%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
+F +VE+ ++ + + L + ++ + RLLE N+KA KDHGY+++V++ K+I
Sbjct: 2 VFLKVEMSLNVLISPSQLSPQGLLL-RKAVIVRLLEDIANRKASKDHGYYIAVSELKAIS 60
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEIL---------HGV---CGPMKYALMSPRRM 108
EG G V FPV F C T P+KGE+L HG+ GP++ +S + M
Sbjct: 61 -EGKVRELTGDVLFPVTFTCITQKPMKGEVLVGSVDKILKHGIFLKSGPIESIFLSEKTM 119
Query: 109 PTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLK 152
++++ G+ + F N + K+ VV+F V RW R +
Sbjct: 120 SDFKYIGGENAVFMN-EHSKLEKDTVVRFKVMGFRWMEADRQFQ 162
>gi|357134424|ref|XP_003568817.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like isoform
1 [Brachypodium distachyon]
gi|357134426|ref|XP_003568818.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like isoform
2 [Brachypodium distachyon]
Length = 175
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 27 QRYTVPRLLEGWINQKACKDHGYFLSVTKSKSIDKEGPTVNGPGVVSFPVIFMCRTFLPV 86
+++ + RLLE N+KA K+HGY+++V + K I EG G V FPV F C T P+
Sbjct: 27 RKFIIVRLLEDVTNRKASKEHGYYIAVNELKEI-SEGKVRELTGDVLFPVTFTCITLKPM 85
Query: 87 KGEIL---------HGV---CGPMKYALMSPRRMPTYRHVSGKKSFFSNDQQPKIGNGVV 134
KGEIL HG+ GP++ +S + M Y+++ G+ F D K+ +
Sbjct: 86 KGEILVGSVDKILKHGMFLKSGPIENIFLSEKTMNDYKYIGGENPMFMKDHS-KLEKDTI 144
Query: 135 VQFLVTAVRWSGEGRNLK 152
V+F V RW R +
Sbjct: 145 VRFRVMGFRWMEGDRQFQ 162
>gi|2244822|emb|CAB10245.1| RNA polymerase II fifth largest subunit like protein [Arabidopsis
thaliana]
gi|7268172|emb|CAB78508.1| RNA polymerase II fifth largest subunit like protein [Arabidopsis
thaliana]
Length = 161
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 81/154 (52%), Gaps = 21/154 (13%)
Query: 27 QRYTVPRLLEGWINQKACKDHGYFLSVTKSKSIDK--EGPTVNGPGVVSFPVIFMCRTFL 84
+R + LLE + ++KA K+ GY+++VT ++DK EG G V FPV+F TF
Sbjct: 9 KRAILVELLEAFASKKATKELGYYVAVT---TLDKIGEGKIREHTGEVLFPVMFSGMTFK 65
Query: 85 PVKGEILHGV------------CGPMKYALMSPRRMPTYRHVSGKKSFFSNDQQPKIGNG 132
KGEI+HGV CGP++ +S +MP Y+++ G+ F N++ +I
Sbjct: 66 IFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPDYKYIPGENPIFMNEKTSRIQVE 125
Query: 133 VVVQFLVTAVRWSGEGRNLKREYLVFGRAKGESI 166
V+ +V ++W ++RE+ +G+ +
Sbjct: 126 TTVRVVVIGIKW----MEVEREFQALASLEGDYL 155
>gi|218196310|gb|EEC78737.1| hypothetical protein OsI_18944 [Oryza sativa Indica Group]
Length = 175
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 27 QRYTVPRLLEGWINQKACKDHGYFLSVTKSKSIDKEGPTVNGPGVVSFPVIFMCRTFLPV 86
++ + LLE N+KA KDHGY+++V++ K+I EG G V FPV F C T P
Sbjct: 27 RKAVIVSLLEEIANRKASKDHGYYIAVSELKAIS-EGKVRELTGDVLFPVTFTCITQKPT 85
Query: 87 KGEIL---------HGV---CGPMKYALMSPRRMPTYRHVSGKKSFFSNDQQPKIGNGVV 134
KGEIL HGV GP++ +S + + Y+++ G+ F ND K+
Sbjct: 86 KGEILVGSVDKILKHGVFLKSGPIESIFLSEKTLSDYKYIGGENPMFMNDHS-KLEKDTA 144
Query: 135 VQFLVTAVRWSGEGRNLK 152
V+F V RW R +
Sbjct: 145 VRFKVMGFRWMEADRQFQ 162
>gi|57863806|gb|AAS98454.2| putative receptor kinase [Oryza sativa Japonica Group]
Length = 715
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 27 QRYTVPRLLEGWINQKACKDHGYFLSVTKSKSIDKEGPTVNGPGVVSFPVIFMCRTFLPV 86
++ + LLE N+KA KDHGY+++V++ K+I EG G V FPV F C T P
Sbjct: 62 RKAVIVSLLEEIANRKASKDHGYYIAVSELKAI-SEGKVRELTGDVLFPVTFTCITQKPT 120
Query: 87 KGEIL---------HGV---CGPMKYALMSPRRMPTYRHVSGKKSFFSNDQQPKIGNGVV 134
KGEIL HGV GP++ +S + + Y+++ G+ F ND K+
Sbjct: 121 KGEILVGSVDKILKHGVFLKSGPIESIFLSEKTLSDYKYIGGENPMFMNDHS-KLEKDTA 179
Query: 135 VQFLVTAVRWSGEGRNLK 152
V+F V RW R +
Sbjct: 180 VRFKVMGFRWMEADRQFQ 197
>gi|222630667|gb|EEE62799.1| hypothetical protein OsJ_17602 [Oryza sativa Japonica Group]
Length = 796
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 15/164 (9%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
+F +V++ ++ + + L + ++ + LLE N+KA KDHGY+++V++ K+I
Sbjct: 2 VFLKVDMSWNVLISPSELSPKGLLL-RKAVIVSLLEEIANRKASKDHGYYIAVSELKAI- 59
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEIL---------HGV---CGPMKYALMSPRRM 108
EG G V FPV F C T P KGEIL HGV GP++ +S + +
Sbjct: 60 SEGKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVFLKSGPIESIFLSEKTL 119
Query: 109 PTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLK 152
Y+++ G+ F ND K+ V+F V RW R +
Sbjct: 120 SDYKYIGGENPMFMNDHS-KLEKDTAVRFKVMGFRWMEADRQFQ 162
>gi|357134557|ref|XP_003568883.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Brachypodium distachyon]
Length = 175
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 27 QRYTVPRLLEGWINQKACKDHGYFLSVTKSKSIDKEGPTVNGPGVVSFPVIFMCRTFLPV 86
++ + RLLE N+KA K+HGY+++V + K I EG G V FPV F C T P+
Sbjct: 27 RKSILVRLLEDIANRKASKEHGYYIAVNELKEIS-EGKVRELTGDVLFPVTFTCITLKPM 85
Query: 87 KGEIL---------HGV---CGPMKYALMSPRRMPTYRHVSGKKSFFSNDQQPKIGNGVV 134
KGEIL HGV GP++ +S + M Y+++ G+ F D K+ V
Sbjct: 86 KGEILVGSVEKILKHGVFLKSGPIENVFLSEKTMNDYKYIGGENPMFMKDHS-KLEKDTV 144
Query: 135 VQFLVTAVRWSGEGRNLK 152
++F RW R +
Sbjct: 145 LRFKAMGFRWMEADRQFQ 162
>gi|357441001|ref|XP_003590778.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
gi|355479826|gb|AES61029.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
Length = 173
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 28/164 (17%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF +V+L ++ + A+++ L + Q+A KD GYFL+VT I
Sbjct: 8 MFLKVQLPWNVIIAAENLKPGSLML---------------QRATKDMGYFLAVTTLDKIG 52
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGVC------------GPMKYALMSPRRM 108
EG G V FPV+F TF KGE+L GV GP++ A +S +M
Sbjct: 53 -EGKVRQHTGDVLFPVVFNAVTFKIFKGEVLEGVVHKVLKHGVFMRIGPIENAYLSSSKM 111
Query: 109 PTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEGRNLK 152
P Y +V G+ +F N + PKI V V+ +V +W R +
Sbjct: 112 PGYVYVLGENPYFMNQKMPKIAKDVKVRVVVIGTKWMEAEREFQ 155
>gi|11994719|dbj|BAB03035.1| RNA polymerase II fifth largest subunit-like protein [Arabidopsis
thaliana]
Length = 157
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 17/152 (11%)
Query: 27 QRYTVPRLLEGWINQKACKDHGYFLSVTKSKSIDKEGPTVNGPGVVSFPVIFMCRTFLPV 86
QR V RLLE + +KA KD GY ++ T ++I EG G + FPV+F F
Sbjct: 8 QRAIVIRLLEAFSKEKATKDLGYLITPTILENIG-EGKIKEQTGEIQFPVVFNGICFKMF 66
Query: 87 KGEILHGVC------------GPMKYALMSPRRMPTYRHVSGKKSFFSNDQQPKIGNGVV 134
KGEI+HGV GP + +S +MP Y + G+ FF N +I G
Sbjct: 67 KGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPGYEFIPGENPFFMNQYMSRIQIGAR 126
Query: 135 VQFLVTAVRWSGEGRNLKREYLVFGRAKGESI 166
V+F+V W R +++++ G+++
Sbjct: 127 VRFVVLDTEW----REAEKDFMALASIDGDNL 154
>gi|326527317|dbj|BAK04600.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 175
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 27 QRYTVPRLLEGWINQKACKDHGYFLSVTKSKSIDKEGPTVNGPGVVSFPVIFMCRTFLPV 86
++ + RLLE N+KA +HGY+++V + K+I EG G V FPV F C T P+
Sbjct: 27 RKSIIVRLLEDITNRKASNEHGYYIAVNELKTIS-EGKVRELTGDVLFPVTFTCITQRPM 85
Query: 87 KGEIL---------HGV---CGPMKYALMSPRRMPTYRHVSGKKSFFSNDQQPKIGNGVV 134
KGEIL HGV GP++ +S + M Y+++ G+ F D K+
Sbjct: 86 KGEILVGSVEKILKHGVFLKSGPIESIFLSEKSMSDYKYMGGENPMFMKDHS-KLERDTA 144
Query: 135 VQFLVTAVRWSGEGRNLK 152
V+F V RW R +
Sbjct: 145 VRFKVMGFRWMEAERQFQ 162
>gi|115462713|ref|NP_001054956.1| Os05g0224700 [Oryza sativa Japonica Group]
gi|113578507|dbj|BAF16870.1| Os05g0224700 [Oryza sativa Japonica Group]
Length = 782
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
+F +V++ ++ + + L + ++ + LLE N+KA KDHGY+++V++ K+I
Sbjct: 2 VFLKVDMSWNVLISPSELSPKGLLL-RKAVIVSLLEEIANRKASKDHGYYIAVSELKAI- 59
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEIL---------HGV---CGPMKYALMSPRRM 108
EG G V FPV F C T P KGEIL HGV GP++ +S + +
Sbjct: 60 SEGKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVFLKSGPIESIFLSEKTL 119
Query: 109 PTYRHVSGKKSFFSNDQQPKIGNGVVVQF 137
Y+++ G+ F ND K+ V+F
Sbjct: 120 SDYKYIGGENPMFMNDHS-KLEKDTAVRF 147
>gi|168006688|ref|XP_001756041.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692971|gb|EDQ79326.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 190
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MFFEVEL R + V + + +EL +R + RLL+ + ++ ++HG+ ++VT + +
Sbjct: 1 MFFEVELRRLVVVEPQELG-DELHT-RRAMIRRLLKDFDAERCSEEHGFHVTVTTLEDVS 58
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHG 93
G +G G V F V F C F P++ EIL
Sbjct: 59 P-GKIRSGTGSVIFWVTFKCIVFRPIRNEILEA 90
>gi|302783046|ref|XP_002973296.1| hypothetical protein SELMODRAFT_98932 [Selaginella moellendorffii]
gi|302789680|ref|XP_002976608.1| hypothetical protein SELMODRAFT_105350 [Selaginella moellendorffii]
gi|300155646|gb|EFJ22277.1| hypothetical protein SELMODRAFT_105350 [Selaginella moellendorffii]
gi|300159049|gb|EFJ25670.1| hypothetical protein SELMODRAFT_98932 [Selaginella moellendorffii]
Length = 175
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 16/160 (10%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
M++E+ L RD+ V + +D + +R+ + LLE + + ++HGY+++ T +
Sbjct: 1 MWWEISLRRDVIVHPRHMDPSGGH--RRWIIQTLLEDMEDLQCSREHGYYVAPTTLSKV- 57
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEIL------------HGVCGPMKYALMSPRRM 108
G + G VS+ V F C F +K EI+ CGP + M
Sbjct: 58 -SGGMIRESGGVSYKVDFKCMVFKLIKNEIVELEIENVKQSGAEASCGPYTAIFLHHSLM 116
Query: 109 PTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEG 148
+ + + F N I G V+ + ++ G+G
Sbjct: 117 TGFVYSNENGPCFKNSDGVVISKGCAVRAKILGGQFMGDG 156
>gi|297796859|ref|XP_002866314.1| DNA-directed RNA polymerase II [Arabidopsis lyrata subsp. lyrata]
gi|297312149|gb|EFH42573.1| DNA-directed RNA polymerase II [Arabidopsis lyrata subsp. lyrata]
Length = 176
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MFF + L R++ + + RN LR + + +EG + + HG+ +++T +SI
Sbjct: 1 MFFHIVLERNMQLHPRFFGRN-LRENLVSKLMKDVEGTCSGR----HGFVVAITGIESIG 55
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV 94
K G +G G V+FPV + C F P KGEIL V
Sbjct: 56 K-GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAV 88
>gi|255558950|ref|XP_002520498.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
gi|223540340|gb|EEF41911.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
Length = 176
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MFF + L R++ + + RN LR + + +EG + + HG+ +++T +S+
Sbjct: 1 MFFHIVLERNMQLHPRYFGRN-LRENLVSKLMKDVEGTCSGR----HGFVVAITGIESVG 55
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV 94
K G +G G V+FPV + C F P KGEIL V
Sbjct: 56 K-GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAV 88
>gi|449466050|ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449518487|ref|XP_004166273.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
Length = 176
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MFF + L R++ + + RN LR + + +EG + + HG+ +++T ++I
Sbjct: 1 MFFHIVLERNMQLHPRHFGRN-LRENLVSKLMKDVEGTCSGR----HGFVVAITGIENIG 55
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV 94
K G +G G V+FPV + C F P KGEIL V
Sbjct: 56 K-GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAV 88
>gi|351722267|ref|NP_001236982.1| DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
gi|356512183|ref|XP_003524800.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Glycine max]
gi|1173137|sp|P46279.1|RPB7_SOYBN RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7
gi|170052|gb|AAA34005.1| RNA polymerase II [Glycine max]
gi|255626843|gb|ACU13766.1| unknown [Glycine max]
Length = 176
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MFF + L R++ + + RN LR + + +EG + + HG+ ++VT ++I
Sbjct: 1 MFFHIVLERNMQLHPRYFGRN-LRDNLVSKLMKDVEGTCSGR----HGFVVAVTGIENIG 55
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV 94
K G +G G V+FPV + C F P KGEIL V
Sbjct: 56 K-GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAV 88
>gi|357476433|ref|XP_003608502.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
gi|217071674|gb|ACJ84197.1| unknown [Medicago truncatula]
gi|355509557|gb|AES90699.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
gi|388514911|gb|AFK45517.1| unknown [Medicago truncatula]
Length = 176
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MFF + L R++ + + RN LR + + +EG + + HG+ ++VT ++I
Sbjct: 1 MFFHIVLERNMQLHPRYFGRN-LRDNLVSKLMKDVEGTCSGR----HGFVVAVTGIENIG 55
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV 94
K G +G G V+FPV + C F P KGEIL V
Sbjct: 56 K-GIIRDGTGFVTFPVKYQCVVFRPFKGEILEAV 88
>gi|352681821|ref|YP_004892345.1| DNA-directed RNA polymerase subunit E' [Thermoproteus tenax Kra 1]
gi|350274620|emb|CCC81265.1| DNA-directed RNA polymerase, subunit E' [Thermoproteus tenax Kra 1]
Length = 189
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 21/123 (17%)
Query: 42 KACKDHGYFLSVTKSKSIDKEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGVC------ 95
K+ +D GY ++V +K +++EG + G G IF TF+P+ GE++HG+
Sbjct: 38 KSFRDLGYVVAVLDAK-VNREGVIIFGDGATYHKAIFHILTFMPLDGEVVHGIVESAREV 96
Query: 96 ------GPM-----KYALMSPRRMPTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRW 144
GP+ K LM P + KSF + K+ G VV+ +T + +
Sbjct: 97 GVMVRIGPVLGFINKIHLMDE---PNVLFDASTKSFIGERTKKKLSIGDVVRARITGISY 153
Query: 145 SGE 147
+
Sbjct: 154 VAQ 156
>gi|388502464|gb|AFK39298.1| unknown [Lotus japonicus]
Length = 176
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MFF + L R++ + + RN LR + + +EG + + HG+ ++VT +++
Sbjct: 1 MFFHIVLERNMQLHPRYFGRN-LRDNLVAKLMKDVEGTCSGR----HGFVVAVTGIENVG 55
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV 94
K G +G G V+FPV + C F P KGEIL V
Sbjct: 56 K-GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAV 88
>gi|224056563|ref|XP_002298912.1| predicted protein [Populus trichocarpa]
gi|222846170|gb|EEE83717.1| predicted protein [Populus trichocarpa]
Length = 176
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MFF + L R++ + + RN LR + + +EG + + HG+ +++T ++I
Sbjct: 1 MFFHIVLERNMQLHPRFFGRN-LRENIVSKLMKDVEGTCSGR----HGFVVAITGIENIG 55
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV 94
K G +G G V+FPV + C F P KGEIL V
Sbjct: 56 K-GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAV 88
>gi|15237831|ref|NP_200726.1| DNA-directed RNA polymerase II subunit RPB7 [Arabidopsis
thaliana]
gi|585917|sp|P38421.1|RPB7_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7
gi|166854|gb|AAA32861.1| RNA polymerase II [Arabidopsis thaliana]
gi|9759239|dbj|BAB09763.1| DNA-directed RNA polymerase II 19 kD polypeptide (RNA polymerase
II subunit 5) [Arabidopsis thaliana]
gi|26452908|dbj|BAC43532.1| putative RNA polymerase II [Arabidopsis thaliana]
gi|28973525|gb|AAO64087.1| putative RNA polymerase II [Arabidopsis thaliana]
gi|332009771|gb|AED97154.1| DNA-directed RNA polymerase II subunit RPB7 [Arabidopsis
thaliana]
Length = 176
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MFF + L R++ + + RN L+ + + +EG + + HG+ +++T +I
Sbjct: 1 MFFHIVLERNMQLHPRFFGRN-LKENLVSKLMKDVEGTCSGR----HGFVVAITGIDTIG 55
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV 94
K G +G G V+FPV + C F P KGEIL V
Sbjct: 56 K-GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAV 88
>gi|168056096|ref|XP_001780058.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668556|gb|EDQ55161.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 177
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 26/140 (18%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKD--------HGYFLS 52
MFF + L DRN L++ R+ P L + I K +D HG+ ++
Sbjct: 1 MFFHIYL-----------DRN-LQLHPRHFGPHLRDKLI-AKLIQDVEGTCSGRHGFVVA 47
Query: 53 VTKSKSIDKEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGVCGPMK----YALMSPRRM 108
VT ++I G +G G V+FPV + C F P KGEIL V + +A P ++
Sbjct: 48 VTAVETI-GSGLIRDGTGFVTFPVKYQCVVFRPFKGEILESVVTMVNKMGFFAEAGPVQI 106
Query: 109 PTYRHVSGKKSFFSNDQQPK 128
H+ F +D P
Sbjct: 107 FVSNHLIPDDMAFQSDDVPN 126
>gi|302754896|ref|XP_002960872.1| hypothetical protein SELMODRAFT_75793 [Selaginella
moellendorffii]
gi|302767440|ref|XP_002967140.1| hypothetical protein SELMODRAFT_87027 [Selaginella
moellendorffii]
gi|300165131|gb|EFJ31739.1| hypothetical protein SELMODRAFT_87027 [Selaginella
moellendorffii]
gi|300171811|gb|EFJ38411.1| hypothetical protein SELMODRAFT_75793 [Selaginella
moellendorffii]
Length = 177
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 20/101 (19%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWIN------QKACKD-HGYFLSV 53
MFF + L R+ L++ R+ P+L + + + C HG+ ++V
Sbjct: 1 MFFHIRLERN------------LQLHPRFFGPQLRDKLVEKLIHDVEGTCSGRHGFVVAV 48
Query: 54 TKSKSIDKEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV 94
T +I K G +G G V+FP+ + C F P KGEIL GV
Sbjct: 49 TGVDTIGK-GLIRDGTGYVTFPIHYQCVVFRPFKGEILEGV 88
>gi|225434800|ref|XP_002282298.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Vitis
vinifera]
gi|147841138|emb|CAN75204.1| hypothetical protein VITISV_042914 [Vitis vinifera]
gi|297745997|emb|CBI16053.3| unnamed protein product [Vitis vinifera]
Length = 176
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MFF + L R++ + + R+ LR + + +EG + + HG+ +++T +++
Sbjct: 1 MFFHIVLERNMQLHPRHFGRH-LRDNLVAKLVKDVEGTCSGR----HGFVVAITGIENVG 55
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV 94
K G +G G V+FPV + C F P KGEIL V
Sbjct: 56 K-GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAV 88
>gi|126644185|ref|XP_001388228.1| DNA-directed RNA polymerase II [Cryptosporidium parvum Iowa II]
gi|126117301|gb|EAZ51401.1| DNA-directed RNA polymerase II, putative [Cryptosporidium parvum
Iowa II]
Length = 178
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 26/147 (17%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYT--VPRLLEGWINQKACKDHGYFLSVTKSKS 58
MFF VEL R+I+V ++ RY + +L + + +GY + V K
Sbjct: 1 MFFFVELWRNISVKPS-------QLGPRYNEHIDDILRSQVEGQRAPPYGYVVCVIKI-I 52
Query: 59 IDKEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV------------CGPMKYALMSPR 106
+ + G + G++ PV + + P+KGE++ GV CGP+K +S
Sbjct: 53 LKQPGRVQDSTGLIIVPVKYQAIVYRPIKGEVVDGVVESVNELGVIVDCGPLKRVFVSQS 112
Query: 107 RMP---TYRH-VSGKKSFFSNDQQPKI 129
+P Y+ + G+ S D + +I
Sbjct: 113 ALPENMVYKSGIDGQSSRIYIDTKTQI 139
>gi|326496519|dbj|BAJ94721.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 236
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MFF + L R++ + + + LR + + +EG + + HG+ +++T + I
Sbjct: 60 MFFHIVLERNMQLHPRHFGPH-LRDKLVAKLMKDVEGTCSGR----HGFVVAITGVEDIG 114
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV 94
K G G G V+FPV + C F P KGEIL V
Sbjct: 115 K-GLIREGTGFVTFPVKYQCVVFRPFKGEILEAV 147
>gi|111140005|gb|ABH06364.1| RNA polymerase II [Sorbus aucuparia]
Length = 110
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 DHGYFLSVTKSKSIDKEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV 94
HG+ +++T ++I K G +G G VSFP+ + C F P KGEIL V
Sbjct: 37 QHGFVVAITGIENIGK-GMIRDGTGFVSFPMKYQCVVFRPFKGEILEAV 84
>gi|413944603|gb|AFW77252.1| hypothetical protein ZEAMMB73_465202 [Zea mays]
Length = 82
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
+F E E+ ++ + +DR L + ++ + RLLE N++A K+HGY+++V + K+I
Sbjct: 2 VFLEAEMSWNVLISPSQLDRKGLLL-RKAIIVRLLEDVTNRRASKEHGYYIAVNQLKAIS 60
Query: 61 K 61
+
Sbjct: 61 E 61
>gi|357133761|ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Brachypodium distachyon]
Length = 177
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MFF + L R++ + + + LR + + +EG + + HG+ +++T + I
Sbjct: 1 MFFHIVLERNMQLHPRHFGPH-LRDKLVAKLMKDVEGTCSGR----HGFVVAITGVEDIG 55
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV 94
K G G G V+FPV + C F P KGEIL V
Sbjct: 56 K-GLIREGTGFVTFPVKYQCVVFRPFKGEILEAV 88
>gi|326497319|dbj|BAK02244.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326505504|dbj|BAJ95423.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 177
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MFF + L R++ + + + LR + + +EG + + HG+ +++T + I
Sbjct: 1 MFFHIVLERNMQLHPRHFGPH-LRDKLVAKLMKDVEGTCSGR----HGFVVAITGVEDIG 55
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV 94
K G G G V+FPV + C F P KGEIL V
Sbjct: 56 K-GLIREGTGFVTFPVKYQCVVFRPFKGEILEAV 88
>gi|226500588|ref|NP_001149597.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|242056199|ref|XP_002457245.1| hypothetical protein SORBIDRAFT_03g003990 [Sorghum bicolor]
gi|242090461|ref|XP_002441063.1| hypothetical protein SORBIDRAFT_09g019690 [Sorghum bicolor]
gi|194708012|gb|ACF88090.1| unknown [Zea mays]
gi|195628342|gb|ACG36001.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|241929220|gb|EES02365.1| hypothetical protein SORBIDRAFT_03g003990 [Sorghum bicolor]
gi|241946348|gb|EES19493.1| hypothetical protein SORBIDRAFT_09g019690 [Sorghum bicolor]
gi|413945277|gb|AFW77926.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 177
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 22/102 (21%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKD--------HGYFLS 52
MFF + L R+ +++ R+ P L + ++ K KD HG+ ++
Sbjct: 1 MFFHIVLERN------------MQLHPRHFGPHLRDKLVS-KLIKDVEGTCSGRHGFVVA 47
Query: 53 VTKSKSIDKEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV 94
+T + I K G G G V+FPV + C F P KGEIL V
Sbjct: 48 ITGVEDIGK-GLIREGTGYVTFPVKYQCVVFRPFKGEILEAV 88
>gi|432330728|ref|YP_007248871.1| hypothetical protein Metfor_1324 [Methanoregula formicicum SMSP]
gi|432137437|gb|AGB02364.1| hypothetical protein Metfor_1324 [Methanoregula formicicum SMSP]
Length = 140
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 6 ELLRDIAVPAKSVDRNELRV------PQRYTVPRLLEGWINQKACKD---HGYF--LSVT 54
EL+ + V AKS DR+ +RV + Y P LL+ + K G + + VT
Sbjct: 24 ELIHRLPVTAKSADRDGIRVEDGRVIDRAYNGPVLLDAIARNQTIKTTPASGAYKGVPVT 83
Query: 55 KSKSIDKEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGVCG----PMKYALMSPRR 107
+ D+EG + G+V IF T + + IL VCG P+ +S RR
Sbjct: 84 VTPIRDREGNAIGAIGIVDITGIFDLATLMEHQSAILKQVCGKDPCPLDSEKISSRR 140
>gi|115463767|ref|NP_001055483.1| Os05g0400700 [Oryza sativa Japonica Group]
gi|50878367|gb|AAT85142.1| putative RNA polymerase II subunit 5 [Oryza sativa Japonica
Group]
gi|113579034|dbj|BAF17397.1| Os05g0400700 [Oryza sativa Japonica Group]
gi|125552268|gb|EAY97977.1| hypothetical protein OsI_19896 [Oryza sativa Indica Group]
gi|215704281|dbj|BAG93121.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196761|gb|EEC79188.1| hypothetical protein OsI_19893 [Oryza sativa Indica Group]
gi|222631528|gb|EEE63660.1| hypothetical protein OsJ_18478 [Oryza sativa Japonica Group]
Length = 177
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MFF + L R++ + + + LR + + +EG + + HG+ +++T + +
Sbjct: 1 MFFHIVLERNMQLHPRHFGPH-LRDKLVSKLIKDVEGTCSGR----HGFVVAITGVEDVG 55
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV 94
K G G G V+FPV + C F P KGEIL V
Sbjct: 56 K-GLIREGTGYVTFPVKYQCVVFRPFKGEILEAV 88
>gi|327310158|ref|YP_004337055.1| DNA-directed RNA polymerase subunit E' [Thermoproteus uzoniensis
768-20]
gi|326946637|gb|AEA11743.1| DNA-directed RNA polymerase subunit E' [Thermoproteus uzoniensis
768-20]
Length = 189
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 42 KACKDHGYFLSVTKSKSIDKEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGVC------ 95
K+ +D G+ ++V +K + +EG + G G +F T++P+ GE+++G+
Sbjct: 38 KSFRDLGFVVAVLGAK-VAREGVILFGDGATYHRAVFDLLTYVPLDGEVVYGIVESAREV 96
Query: 96 ------GPM-----KYALMSPRRMPTYRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRW 144
GP+ K LM P + KSF + K+G G +V+ +T V +
Sbjct: 97 GVMVRIGPVLGFINKIHLMEE---PNILFDASTKSFIGERSKRKVGVGDMVRARITGVSY 153
Query: 145 SGEGRNL 151
+ L
Sbjct: 154 VAQKEGL 160
>gi|255073033|ref|XP_002500191.1| predicted protein [Micromonas sp. RCC299]
gi|226515453|gb|ACO61449.1| predicted protein [Micromonas sp. RCC299]
Length = 185
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF+ ++L R+I + + RN R T+ + L+ + HGY + VT +I
Sbjct: 1 MFWHIKLERNIVLEPRFFGRN-----MRDTLMQRLKHEVEGSCTGKHGYIVMVTDFTNIS 55
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV 94
+ T +G F V F F P KG++L V
Sbjct: 56 EGMVTDDGTARAKFRVEFDAIAFRPFKGQVLDAV 89
>gi|209882951|ref|XP_002142910.1| DNA-directed RNA polymerase II subunit RPB7 [Cryptosporidium muris
RN66]
gi|209558516|gb|EEA08561.1| DNA-directed RNA polymerase II subunit RPB7, putative
[Cryptosporidium muris RN66]
Length = 176
Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 18/121 (14%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MFF VEL ++I S+ N+L + +L + + GY + V + +
Sbjct: 1 MFFFVELWKNI-----SLSPNQLGPRYDEHIDDILRSQVEGQWITSFGYVVCVVRIL-LR 54
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV------------CGPMKYALMSPRRM 108
+ G +G G++ P+ + + P+KGE++ G CGP+K +S +
Sbjct: 55 QPGRIQDGTGLIIVPIKYQAIVYRPMKGEVIDGTVESVNELGIIVNCGPLKRVFVSQSAL 114
Query: 109 P 109
P
Sbjct: 115 P 115
>gi|159467891|ref|XP_001692125.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158278852|gb|EDP04615.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 176
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 18/158 (11%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF+ + L + + + K ++LR R + EG K +GY ++VTK I
Sbjct: 1 MFYFLTLSKSLDIHPKHFG-SKLREVIREKLIAETEGTCTGK----YGYVVAVTKVDDIG 55
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGVCGPMK----YALMSPRRMPTYRHV-- 114
+ + G +F V + C P KGE+L V + +A P ++ +H+
Sbjct: 56 RGRIRQDQSGYATFEVSYGCIVCRPYKGEVLDAVVTSVNKMGFFAQAGPLQLFVTQHLIP 115
Query: 115 -------SGKKSFFSNDQQPKIGNGVVVQFLVTAVRWS 145
S S+ S DQ +I G V+ + +++
Sbjct: 116 DEFEFDTSDDNSWISMDQTTRIQGGTHVRIRIVGIKYD 153
>gi|145351559|ref|XP_001420140.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580373|gb|ABO98433.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 179
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 22/173 (12%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MFF V L R+I + + + + L + +G+ + VT+ +
Sbjct: 1 MFFHVNLERNITLEPR-----HFGARMKAVLEEKLRHEVEGTCSGRYGFIVMVTRLAEVS 55
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV------------CGPMKYALMSPRRM 108
+ T +G F + + C F P KGE++ V GP++ + +
Sbjct: 56 EGVVTDDGTARAKFHIKYDCVVFRPFKGEVMDAVVTQVNKFGFFAEAGPLQLFVSNALIT 115
Query: 109 PTYR-HVSGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSGEG----RNLKREYL 156
+ SG+ + S+DQQ +I V+ + +R +K +YL
Sbjct: 116 EDMQFDSSGENCYVSDDQQIRIQRDASVRVRIVGMRIDANDIFCIATIKDDYL 168
>gi|395646496|ref|ZP_10434356.1| RNA 3'-phosphate cyclase [Methanofollis liminatans DSM 4140]
gi|395443236|gb|EJG07993.1| RNA 3'-phosphate cyclase [Methanofollis liminatans DSM 4140]
Length = 321
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 18/149 (12%)
Query: 30 TVPRLLEGWINQKACKDHGYFLSVTKSKSIDKEGPTVNGPGVVSFPVI----------FM 79
++P +L+ W+ HG +++T ++K PT++ V P++
Sbjct: 94 SIPLVLQAWLPVALV--HGGSITLTGGTEVEKS-PTIDYFMQVFLPLLRAHGAEVRVEVR 150
Query: 80 CRTFLPVKGEILHGVCGPMKYALMSPRRMPTYRHVSGKKSFFSN---DQQPKIGNGVVVQ 136
R + P G ++H GP A + P R+P + + + D+Q + V+
Sbjct: 151 ARGYYPAGGGVVHVTAGPSALAPIDPARLPNEQGIVSCTQNLPDHVADRQASAASAVLPD 210
Query: 137 FLVTAVRWSGEGRNLKREYLVFGRAKGES 165
F VT R + GR+ + AKG S
Sbjct: 211 FPVTIDRRT--GRSTGTSVTAWAGAKGAS 237
>gi|171185361|ref|YP_001794280.1| DNA-directed RNA polymerase subunit E' [Pyrobaculum neutrophilum
V24Sta]
gi|170934573|gb|ACB39834.1| RNA polymerase Rpb7 domain protein [Pyrobaculum neutrophilum
V24Sta]
Length = 191
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 42 KACKDHGYFLSVTKSKSIDKEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGVCGPMKYA 101
+ ++ GY ++V +K + +EG V G G +F ++P+ GEI+ GV ++
Sbjct: 38 RVLREVGYVVAVLTAK-VSREGKIVFGDGGTYHKALFTMLAYMPLDGEIVEGVVENVREM 96
Query: 102 LMSPRRMPTYRHV--------------SGKKSFFSNDQQPKIGNGVVVQFLVTAVRWSG- 146
M R P + + KS+ + ++G G VV+ +T V ++
Sbjct: 97 GMLVRIGPVLGFINKIHVMDEPNILFDASTKSYIGERTKRRVGVGDVVRARITGVSFTTP 156
Query: 147 -EGRNL 151
EG +L
Sbjct: 157 REGTDL 162
>gi|326426973|gb|EGD72543.1| hypothetical protein PTSG_00566 [Salpingoeca sp. ATCC 50818]
Length = 171
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQ-RYTVPRLLEGWINQKACKDHGYFLSVTKSKSI 59
MFF++ L D+ +P + + PQ ++ R L + K HGY +SV + I
Sbjct: 1 MFFKLTLEHDVLLPPRFLG------PQLAESIRRKLYEDVESKCIGKHGYIVSVIEIVKI 54
Query: 60 DKEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGVCGPMK----YALMSPRRM 108
EG + G FPV + F PVK E++ + + +A + P R+
Sbjct: 55 -GEGEILVARGETLFPVTYRALVFRPVKNEVVDAIVSTVTKMGIFAEVGPLRV 106
>gi|374635070|ref|ZP_09706675.1| DNA-directed RNA polymerase [Methanotorris formicicus Mc-S-70]
gi|373563472|gb|EHP89666.1| DNA-directed RNA polymerase [Methanotorris formicicus Mc-S-70]
Length = 187
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 16/133 (12%)
Query: 26 PQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSIDKEGPTVNGPGVVSFPVIFMCRTFLP 85
P + T+ ++L KD G+ LS+ K I EG ++G G PV+F ++P
Sbjct: 21 PLKETITKILREKYEGILDKDIGFILSIVDLKEI-GEGKVIHGDGAAYHPVVFDTLIYVP 79
Query: 86 -----VKGEILHGV-------CGPMKYALMSPRRMPTYRHVSGKKSFFSNDQQPK---IG 130
V+GEI+ V GP+ + + M Y K+ + K IG
Sbjct: 80 ELHEVVEGEIVDIVEFGAFVRLGPLDGLIHISQIMDDYVSYDPKREAIIGRETGKVLEIG 139
Query: 131 NGVVVQFLVTAVR 143
+ V + + ++R
Sbjct: 140 DKVRARIVAISLR 152
>gi|15668573|ref|NP_247371.1| DNA-directed RNA polymerase subunit E' [Methanocaldococcus
jannaschii DSM 2661]
gi|2500642|sp|Q57840.1|RPOE1_METJA RecName: Full=DNA-directed RNA polymerase subunit E'
gi|17943304|pdb|1GO3|E Chain E, Structure Of An Archeal Homolog Of The Eukaryotic Rna
Polymerase Ii Rpb4RPB7 COMPLEX
gi|17943306|pdb|1GO3|M Chain M, Structure Of An Archeal Homolog Of The Eukaryotic Rna
Polymerase Ii Rpb4RPB7 COMPLEX
gi|1591102|gb|AAB98387.1| DNA-directed RNA polymerase, subunit E' (rpoE1)
[Methanocaldococcus jannaschii DSM 2661]
Length = 187
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 28 RYTVPRLLEGWINQKACKDHGYFLSVTKSKSIDKEGPTVNGPGVVSFPVIFMCRTFLPVK 87
+ TV ++L + KD G+ LS+ K I EG V+G G PV+F ++P
Sbjct: 23 KETVKKILMEKYEGRLDKDVGFVLSIVDVKDIG-EGKVVHGDGSAYHPVVFETLVYIPEM 81
Query: 88 GEILHG 93
E++ G
Sbjct: 82 YELIEG 87
>gi|145592427|ref|YP_001154429.1| DNA-directed RNA polymerase subunit E' [Pyrobaculum arsenaticum DSM
13514]
gi|379005594|ref|YP_005261266.1| DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form
[Pyrobaculum oguniense TE7]
gi|145284195|gb|ABP51777.1| DNA-directed RNA polymerase, subunit E' [Pyrobaculum arsenaticum
DSM 13514]
gi|375161047|gb|AFA40659.1| DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form
[Pyrobaculum oguniense TE7]
Length = 191
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 15/118 (12%)
Query: 42 KACKDHGYFLSVTKSKSIDKEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGVCGPMKYA 101
+ ++ GY ++V +K + +EG V G G +F F+P+ GEI+ GV ++
Sbjct: 38 RVLREVGYVVAVLNTK-VSREGKIVFGDGGTYHKAVFTMLAFMPLDGEIVEGVVENVREM 96
Query: 102 LMSPRRMPTYRHV--------------SGKKSFFSNDQQPKIGNGVVVQFLVTAVRWS 145
M R P + + KS+ + K+ G +V+ +T V ++
Sbjct: 97 GMLVRIGPVLGFINKIHVMDEPNIFFDASTKSYIGERTKRKVTVGDIVRARITGVSFT 154
>gi|313230246|emb|CBY07950.1| unnamed protein product [Oikopleura dioica]
Length = 172
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF+ + L ++ + N T+ + L + +HG+ + VT SI
Sbjct: 1 MFYHINLEHELLIHPMYFGENLTD-----TIRQKLYSEVEGSCTGEHGFVIGVTNIHSI- 54
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV 94
+G + G G FP+ + F P KGE++ GV
Sbjct: 55 GDGDILAGRGFCLFPIKYAAIVFRPFKGEVVDGV 88
>gi|384247619|gb|EIE21105.1| RNA polymerase II subunit B7 [Coccomyxa subellipsoidea C-169]
Length = 176
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 28/162 (17%)
Query: 28 RYTVPRLLEGWINQKACKD--------HGYFLSVTKSKSIDKEGPTVNGPGVVSFPVIFM 79
R+ PRL E + QK + +G+ + VT + K G G G F V +
Sbjct: 16 RFFGPRLRE-VLEQKLISEVEGTCSGKYGFIICVTGMGHVGK-GSIREGSGTALFKVQYS 73
Query: 80 CRTFLPVKGEILHGVCGPMK----YALMSPRRMPTYRHV---------SGKKSFFSNDQQ 126
C P KGE+L V + +A P ++ H+ +G+ +F S D+
Sbjct: 74 CVVLRPFKGEVLDCVVSSVNKVGFFADAGPLQLFVSNHLIPEDFEFNATGEPAFVSTDEA 133
Query: 127 PKIGNGVVVQFLVTAVRWSGEG----RNLKREYL-VFGRAKG 163
++ G V+ + R +K +YL V +A G
Sbjct: 134 VRVQAGAEVRLRIVGTRMDASEIFCVGTIKEDYLGVISQAAG 175
>gi|374633213|ref|ZP_09705580.1| DNA-directed RNA polymerase subunit E' [Metallosphaera
yellowstonensis MK1]
gi|373524697|gb|EHP69574.1| DNA-directed RNA polymerase subunit E' [Metallosphaera
yellowstonensis MK1]
Length = 176
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 34 LLEGWINQKACKDHGYFLSVTKSKSIDKEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHG 93
+L+ ++ KD G L+VTK+K + +EG V G G V F TF P+ E++ G
Sbjct: 29 ILKNEYQERLFKDLGLVLTVTKAK-VSEEGMIVFGDGATYHEVEFELLTFSPIIQEVIEG 87
Query: 94 VCGPMK----YALMSPRRMPTYRHVS 115
+ Y M P M HVS
Sbjct: 88 DITQVDNYGVYVNMGP--MDGLVHVS 111
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,699,173,083
Number of Sequences: 23463169
Number of extensions: 105445639
Number of successful extensions: 159276
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 159165
Number of HSP's gapped (non-prelim): 72
length of query: 166
length of database: 8,064,228,071
effective HSP length: 127
effective length of query: 39
effective length of database: 9,379,372,904
effective search space: 365795543256
effective search space used: 365795543256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)