BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042741
(166 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2
SV=1
Length = 176
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MFF + L R++ + + RN LR + + +EG + + HG+ ++VT ++I
Sbjct: 1 MFFHIVLERNMQLHPRYFGRN-LRDNLVSKLMKDVEGTCSGR----HGFVVAVTGIENIG 55
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV 94
K G +G G V+FPV + C F P KGEIL V
Sbjct: 56 K-GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAV 88
>sp|P38421|RPB7_ARATH DNA-directed RNA polymerase II subunit RPB7 OS=Arabidopsis
thaliana GN=RPB19 PE=1 SV=1
Length = 176
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MFF + L R++ + + RN L+ + + +EG + + HG+ +++T +I
Sbjct: 1 MFFHIVLERNMQLHPRFFGRN-LKENLVSKLMKDVEGTCSGR----HGFVVAITGIDTIG 55
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV 94
K G +G G V+FPV + C F P KGEIL V
Sbjct: 56 K-GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAV 88
>sp|Q57840|RPOE1_METJA DNA-directed RNA polymerase subunit E' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoE1 PE=1 SV=1
Length = 187
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 28 RYTVPRLLEGWINQKACKDHGYFLSVTKSKSIDKEGPTVNGPGVVSFPVIFMCRTFLPVK 87
+ TV ++L + KD G+ LS+ K I EG V+G G PV+F ++P
Sbjct: 23 KETVKKILMEKYEGRLDKDVGFVLSIVDVKDIG-EGKVVHGDGSAYHPVVFETLVYIPEM 81
Query: 88 GEILHG 93
E++ G
Sbjct: 82 YELIEG 87
>sp|Q0AXT4|Y1161_SYNWW UPF0182 protein Swol_1161 OS=Syntrophomonas wolfei subsp. wolfei
(strain Goettingen) GN=Swol_1161 PE=3 SV=1
Length = 914
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 9 RDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSIDKEG 63
R + + + +D+ EL P+ + WINQ+ HGY L V+ + +EG
Sbjct: 400 RQLMLSVREIDQEEL--------PQQAKTWINQRLMYTHGYGLVVSPVTEVAEEG 446
>sp|Q1JLH7|PSTB1_STRPC Phosphate import ATP-binding protein PstB 1 OS=Streptococcus
pyogenes serotype M12 (strain MGAS9429) GN=pstB1 PE=3
SV=1
Length = 253
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 81 RTFLPVKGEILHGVCGPMKYALMSPRRMPTYRHVSGK 117
RT ++G++L CGP K M+P+R T ++SGK
Sbjct: 217 RTGFFLEGDLLE--CGPTKAMFMNPKRKETEDYISGK 251
>sp|Q1JBJ5|PSTB1_STRPB Phosphate import ATP-binding protein PstB 1 OS=Streptococcus
pyogenes serotype M12 (strain MGAS2096) GN=pstB1 PE=3
SV=1
Length = 253
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 81 RTFLPVKGEILHGVCGPMKYALMSPRRMPTYRHVSGK 117
RT ++G++L CGP K M+P+R T ++SGK
Sbjct: 217 RTGFFLEGDLLE--CGPTKAMFMNPKRKETEDYISGK 251
>sp|P0CZ37|PSTB1_STRPQ Phosphate import ATP-binding protein PstB 1 OS=Streptococcus
pyogenes serotype M3 (strain SSI-1) GN=pstB1 PE=3 SV=1
Length = 252
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 81 RTFLPVKGEILHGVCGPMKYALMSPRRMPTYRHVSGK 117
RT ++G++L CGP K M+P+R T ++SGK
Sbjct: 216 RTGFFLEGDLLE--CGPTKAMFMNPKRKETEDYISGK 250
>sp|P63377|PSTB1_STRP8 Phosphate import ATP-binding protein PstB 1 OS=Streptococcus
pyogenes serotype M18 (strain MGAS8232) GN=pstB1 PE=3
SV=1
Length = 252
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 81 RTFLPVKGEILHGVCGPMKYALMSPRRMPTYRHVSGK 117
RT ++G++L CGP K M+P+R T ++SGK
Sbjct: 216 RTGFFLEGDLLE--CGPTKAMFMNPKRKETEDYISGK 250
>sp|P0CZ36|PSTB1_STRP3 Phosphate import ATP-binding protein PstB 1 OS=Streptococcus
pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
GN=pstB1 PE=3 SV=1
Length = 252
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 81 RTFLPVKGEILHGVCGPMKYALMSPRRMPTYRHVSGK 117
RT ++G++L CGP K M+P+R T ++SGK
Sbjct: 216 RTGFFLEGDLLE--CGPTKAMFMNPKRKETEDYISGK 250
>sp|P63375|PSTB1_STRP1 Phosphate import ATP-binding protein PstB 1 OS=Streptococcus
pyogenes serotype M1 GN=pstB1 PE=3 SV=1
Length = 252
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 81 RTFLPVKGEILHGVCGPMKYALMSPRRMPTYRHVSGK 117
RT ++G++L CGP K M+P+R T ++SGK
Sbjct: 216 RTGFFLEGDLLE--CGPTKAMFMNPKRKETEDYISGK 250
>sp|Q48TC3|PSTB1_STRPM Phosphate import ATP-binding protein PstB 1 OS=Streptococcus
pyogenes serotype M28 (strain MGAS6180) GN=pstB1 PE=3
SV=1
Length = 253
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 81 RTFLPVKGEILHGVCGPMKYALMSPRRMPTYRHVSGK 117
RT ++G++L CGP K M+P+R T ++SGK
Sbjct: 217 RTGFFLEGDLLE--CGPTKAMFMNPKRKETEDYISGK 251
>sp|Q1J6D2|PSTB1_STRPF Phosphate import ATP-binding protein PstB 1 OS=Streptococcus
pyogenes serotype M4 (strain MGAS10750) GN=pstB1 PE=3
SV=1
Length = 253
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 81 RTFLPVKGEILHGVCGPMKYALMSPRRMPTYRHVSGK 117
RT ++G++L CGP K M+P+R T ++SGK
Sbjct: 217 RTGFFLEGDLLE--CGPTKAMFMNPKRKETEDYISGK 251
>sp|Q1JGL3|PSTB1_STRPD Phosphate import ATP-binding protein PstB 1 OS=Streptococcus
pyogenes serotype M2 (strain MGAS10270) GN=pstB1 PE=3
SV=1
Length = 253
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 81 RTFLPVKGEILHGVCGPMKYALMSPRRMPTYRHVSGK 117
RT ++G++L CGP K M+P+R T ++SGK
Sbjct: 217 RTGFFLEGDLLE--CGPTKAMFMNPKRKETEDYISGK 251
>sp|Q5XBY7|PSTB1_STRP6 Phosphate import ATP-binding protein PstB 1 OS=Streptococcus
pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
GN=pstB1 PE=3 SV=2
Length = 252
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 81 RTFLPVKGEILHGVCGPMKYALMSPRRMPTYRHVSGK 117
RT ++G++L CGP K M+P+R T ++SGK
Sbjct: 216 RTGFFLEGDLLE--CGPTKAMFMNPKRKETEDYISGK 250
>sp|Q54P04|RPB7_DICDI DNA-directed RNA polymerase II subunit rpb7 OS=Dictyostelium
discoideum GN=polr2g PE=3 SV=1
Length = 172
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 22/158 (13%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MFF + L +D+ + K N + + + EG + +G+ +++T +
Sbjct: 1 MFFHLTLEKDLHMHPKHCGPNLFTIATQQLYSEV-EGTCTGR----YGFIITITSVDFLS 55
Query: 61 KEGPTVNGPGVVSFPVIFMCRTFLPVKGEILHGV------------CGPMKYALMSPRRM 108
K G + G V F V + F P KGE+L + GP+ +S + +
Sbjct: 56 K-GKVLESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVTNLGFFAEAGPLS-IFVSTQLI 113
Query: 109 PT---YRHVSGKKSFFSNDQQPKIGNGVVVQFLVTAVR 143
P+ + S F S D KI V+ + R
Sbjct: 114 PSDMIFDAQSAVPCFVSEDGSSKISKDDEVRLQIKGTR 151
>sp|P62489|RPB7_RAT DNA-directed RNA polymerase II subunit RPB7 OS=Rattus norvegicus
GN=Polr2g PE=2 SV=1
Length = 172
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF+ + L +I + + N L TV + L + +G+ ++VT +ID
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLN-----TVKQKLFTEVEGTCTGKYGFVIAVT---TID 52
Query: 61 KEGPTVNGPG--VVSFPVIFMCRTFLPVKGEILHGV 94
G V PG V +PV + F P KGE++ V
Sbjct: 53 NIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAV 88
>sp|P62488|RPB7_MOUSE DNA-directed RNA polymerase II subunit RPB7 OS=Mus musculus
GN=Polr2g PE=2 SV=1
Length = 172
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF+ + L +I + + N L TV + L + +G+ ++VT +ID
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLN-----TVKQKLFTEVEGTCTGKYGFVIAVT---TID 52
Query: 61 KEGPTVNGPG--VVSFPVIFMCRTFLPVKGEILHGV 94
G V PG V +PV + F P KGE++ V
Sbjct: 53 NIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAV 88
>sp|P62487|RPB7_HUMAN DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens
GN=POLR2G PE=1 SV=1
Length = 172
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF+ + L +I + + N L TV + L + +G+ ++VT +ID
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLN-----TVKQKLFTEVEGTCTGKYGFVIAVT---TID 52
Query: 61 KEGPTVNGPG--VVSFPVIFMCRTFLPVKGEILHGV 94
G V PG V +PV + F P KGE++ V
Sbjct: 53 NIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAV 88
>sp|Q5E9B8|RPB7_BOVIN DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus
GN=POLR2G PE=2 SV=1
Length = 172
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF+ + L +I + + N L TV + L + +G+ ++VT +ID
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLN-----TVKQKLFTEVEGTCTGKYGFVIAVT---TID 52
Query: 61 KEGPTVNGPG--VVSFPVIFMCRTFLPVKGEILHGV 94
G V PG V +PV + F P KGE++ V
Sbjct: 53 NIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAV 88
>sp|Q7ZW41|RPB7_DANRE DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio
GN=polr2g PE=2 SV=1
Length = 172
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 1 MFFEVELLRDIAVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKSKSID 60
MF+ + L +I + + N L TV + L + +G+ ++VT +ID
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLN-----TVKQKLFTEVEGTCTGKYGFVIAVT---TID 52
Query: 61 KEGPTVNGPG--VVSFPVIFMCRTFLPVKGEILHGV 94
G V PG V +PV + F P KGE++ V
Sbjct: 53 NIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAV 88
>sp|Q53654|CNA_STAAU Collagen adhesin OS=Staphylococcus aureus GN=cna PE=1 SV=1
Length = 1183
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 4 EVELLRDI-------AVPAKSVDRNELRVPQRYTVPRLLEGWINQKACKDHGYFLSVTKS 56
E+E++ D A+P+ E+ P+ YT + E K + GYF ++ +
Sbjct: 367 EIEIITDANGIANIKALPSGDYILKEIEAPRPYTFDKDKEYPFTMKDTDNQGYFTTIENA 426
Query: 57 KSIDK 61
K+I+K
Sbjct: 427 KAIEK 431
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,232,456
Number of Sequences: 539616
Number of extensions: 2534291
Number of successful extensions: 4046
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 4044
Number of HSP's gapped (non-prelim): 23
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)