BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042742
(834 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XFI|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g17340
pdb|2Q40|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g17340
Length = 367
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 127/371 (34%), Positives = 200/371 (53%), Gaps = 46/371 (12%)
Query: 464 DPKMYEPNTIDLADRSELEYWFTVLSEHLPDLVDKAVASEGGTDDAKRRGDAFARAFSAH 523
DPK PN I W V + +P +A S+ DA R + FA ++
Sbjct: 34 DPKKATPNEIS---------WINVFANSIPSFKKRA-ESDITVPDAPARAEKFAERYAGI 83
Query: 524 LARLMEEPAAYGKLGLANXXXXXXXXXXXFQ---FLDAYRSIKQRENEASLAVLPDLLVE 580
L L ++P ++G G + + F D ++ +K EN ++++ P ++
Sbjct: 84 LEDLKKDPESHG--GPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSL 141
Query: 581 LDSMSKE-TRLLMLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMQRPWRVDDF 639
D++ + RL L+ G+ A NIFD GS +++ + + +N + RPW +DD
Sbjct: 142 SDAIEDDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDGM-SFLASCQNLVPRPWVIDDL 200
Query: 640 DAFKERMLGSGDNKPRPHKRALLFVDNSGADVVLGMLPLARELLRRGTEVVLVANSLPAL 699
+ F+ + + + K+A++FVDNSGAD++LG+LP ARELLRRG +VVL AN LP++
Sbjct: 201 ENFQAKWIN------KSWKKAVIFVDNSGADIILGILPFARELLRRGAQVVLAANELPSI 254
Query: 700 NDITAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMINTLDGSKENSPSVPLMVVENGCG 759
NDIT EL +I+++ E G LL +D SK L++ +G
Sbjct: 255 NDITCTELTEILSQLKD---------ENGQLL------GVDTSK-------LLIANSGND 292
Query: 760 SPCIDLRQVSSELAAAAKNADLIILEGMGRALHTNFNARFKCEALKLAMVKNQRLAEKLI 819
P IDL +VS ELA + +ADL+I+EGMGR + TN A+FKC++LK+ MVK+ +AE +
Sbjct: 293 LPVIDLSRVSQELAYLSSDADLVIVEGMGRGIETNLYAQFKCDSLKIGMVKHLEVAE-FL 351
Query: 820 KGNIYDCVCRY 830
G +YDCV ++
Sbjct: 352 GGRLYDCVFKF 362
>pdb|3MK6|A Chain A, Substrate And Inhibitor Binding To Pank
pdb|3MK6|B Chain B, Substrate And Inhibitor Binding To Pank
pdb|3MK6|C Chain C, Substrate And Inhibitor Binding To Pank
pdb|3MK6|D Chain D, Substrate And Inhibitor Binding To Pank
Length = 376
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 176/352 (50%), Gaps = 39/352 (11%)
Query: 43 LALDIGGSLIKLVYFS---------RHEDQSIDDKRKKTIKERLGISNGNR------RSY 87
+DIGG+L+KL YF + E +S+ RK S G R +
Sbjct: 22 FGMDIGGTLVKLSYFEPIDITAEEEQEEVESLKSIRKYLTSNVAYGSTGIRDVHLELKDL 81
Query: 88 PILG--GRLHFVKFETTKISECLDFIHSKQLH--RGGIHATGGGAYKFADLFKERLGVSL 143
+ G G LHF++F T + + K + + ATGGGAYKF F+ + L
Sbjct: 82 TLFGRRGNLHFIRFPTQDLPTFIQMGRDKNFSTLQTVLCATGGGAYKFEKDFRTIGNLHL 141
Query: 144 DKEDEMDCLVAGANFLLKAI---RHEAFTHMEGQK----EFVQIDTNDLFPYLLVNIGSG 196
K DE+DCLV G ++ + E + + + + + +D +P L+VNIGSG
Sbjct: 142 HKLDELDCLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPFNLDDPYPLLVVNIGSG 201
Query: 197 VSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNR--------- 247
VS++ V ++RV+GT++GGGT+ GL LLT C+SF+E LE++ +GD+
Sbjct: 202 VSILAVHSKDNYKRVTGTSLGGGTFLGLCSLLTGCESFEEALEMASKGDSTQADKLVRDI 261
Query: 248 ---DHRHIGLSASTIASSFGKTISDKKELADYRPEDISLSLLRMISYNIGQISYLNAXXX 304
D+ GL +ASSFG I +K ED++ + L I+ NIG ++ + A
Sbjct: 262 YGGDYERFGLPGWAVASSFGNMIYKEKR-ESVSKEDLARATLVTITNNIGSVARMCAVNE 320
Query: 305 XXXXXXXXXXXXXXHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAFM 356
+ +M +++A+ +WSKG+ +A+FL HEG+ GA+GA +
Sbjct: 321 KINRVVFVGNFLRVNTLSMKLLAYALDYWSKGQLKALFLEHEGYFGAVGALL 372
>pdb|2I7P|A Chain A, Crystal Structure Of Human Pank3 In Complex With Accoa
pdb|2I7P|B Chain B, Crystal Structure Of Human Pank3 In Complex With Accoa
pdb|2I7P|C Chain C, Crystal Structure Of Human Pank3 In Complex With Accoa
pdb|2I7P|D Chain D, Crystal Structure Of Human Pank3 In Complex With Accoa
Length = 362
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 176/352 (50%), Gaps = 39/352 (11%)
Query: 43 LALDIGGSLIKLVYFS---------RHEDQSIDDKRKKTIKERLGISNGNR------RSY 87
+DIGG+L+KL YF + E +S+ RK S G R +
Sbjct: 8 FGMDIGGTLVKLSYFEPIDITAEEEQEEVESLKSIRKYLTSNVAYGSTGIRDVHLELKDL 67
Query: 88 PILG--GRLHFVKFETTKISECLDFIHSKQLH--RGGIHATGGGAYKFADLFKERLGVSL 143
+ G G LHF++F T + + K + + ATGGGAYKF F+ + L
Sbjct: 68 TLFGRRGNLHFIRFPTQDLPTFIQMGRDKNFSTLQTVLCATGGGAYKFEKDFRTIGNLHL 127
Query: 144 DKEDEMDCLVAGANFLLKAI---RHEAFTHMEGQK----EFVQIDTNDLFPYLLVNIGSG 196
K DE+DCLV G ++ + E + + + + + +D +P L+VNIGSG
Sbjct: 128 HKLDELDCLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPFNLDDPYPLLVVNIGSG 187
Query: 197 VSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNR--------- 247
VS++ V ++RV+GT++GGGT+ GL LLT C+SF+E LE++ +GD+
Sbjct: 188 VSILAVHSKDNYKRVTGTSLGGGTFLGLCSLLTGCESFEEALEMASKGDSTQADKLVRDI 247
Query: 248 ---DHRHIGLSASTIASSFGKTISDKKELADYRPEDISLSLLRMISYNIGQISYLNAXXX 304
D+ GL +ASSFG I +K ED++ + L I+ NIG ++ + A
Sbjct: 248 YGGDYERFGLPGWAVASSFGNMIYKEKR-ESVSKEDLARATLVTITNNIGSVARMCAVNE 306
Query: 305 XXXXXXXXXXXXXXHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAFM 356
+ +M +++A+ +WSKG+ +A+FL HEG+ GA+GA +
Sbjct: 307 KINRVVFVGNFLRVNTLSMKLLAYALDYWSKGQLKALFLEHEGYFGAVGALL 358
>pdb|3SMS|A Chain A, Human Pantothenate Kinase 3 In Complex With A Pantothenate
Analog
Length = 382
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/363 (31%), Positives = 180/363 (49%), Gaps = 40/363 (11%)
Query: 32 LLPNQSDDISHLALDIGGSLIKLVYFS---------RHEDQSIDDKRKKTIKERLGISNG 82
L+P S +DIGG+L+KL YF + E +S+ RK S G
Sbjct: 14 LVPRGSS-FPWFGMDIGGTLVKLSYFEPIDITAEEEQEEVESLKSIRKYLTSNVAYGSTG 72
Query: 83 NR------RSYPILG--GRLHFVKFETTKISECLDFIHSKQLH--RGGIHATGGGAYKFA 132
R + + G G LHF++F T + + K + + ATGGGAYKF
Sbjct: 73 IRDVHLELKDLTLFGRRGNLHFIRFPTQDLPTFIQMGRDKNFSTLQTVLCATGGGAYKFE 132
Query: 133 DLFKERLGVSLDKEDEMDCLVAGANFLLKAI---RHEAFTHMEGQK----EFVQIDTNDL 185
F+ + L K DE+DCLV G ++ + E + + + + + +D
Sbjct: 133 KDFRTIGNLHLHKLDELDCLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPFNLDDP 192
Query: 186 FPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGD 245
+P L+VNIGSGVS++ V ++RV+GT++GGGT+ GL LLT C+SF+E LE++ +GD
Sbjct: 193 YPLLVVNIGSGVSILAVHSKDNYKRVTGTSLGGGTFLGLCSLLTGCESFEEALEMASKGD 252
Query: 246 NR------------DHRHIGLSASTIASSFGKTISDKKELADYRPEDISLSLLRMISYNI 293
+ D+ GL +ASSFG I +K ED++ + L I+ NI
Sbjct: 253 STQADKLVRDIYGGDYERFGLPGWAVASSFGNMIYKEKR-ESVSKEDLARATLVTITNNI 311
Query: 294 GQISYLNAXXXXXXXXXXXXXXXXXHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALG 353
G ++ + A + +M +++A+ +WSKG+ +A+FL HEG+ GA+G
Sbjct: 312 GSVARMCAVNEKINRVVFVGNFLRVNTLSMKLLAYALDYWSKGQLKALFLEHEGYFGAVG 371
Query: 354 AFM 356
A +
Sbjct: 372 ALL 374
>pdb|3SMP|A Chain A, Monoclinic Crystal Structure Of Human Pantothenate Kinase
1 Alpha
pdb|3SMP|B Chain B, Monoclinic Crystal Structure Of Human Pantothenate Kinase
1 Alpha
Length = 386
Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 116/359 (32%), Positives = 187/359 (52%), Gaps = 45/359 (12%)
Query: 43 LALDIGGSLIKLVYFSRHE---------DQSIDDKRK----KTIKERLGISNGNR--RSY 87
+DIGG+L+KLVYF + +++ RK T + GI + + ++
Sbjct: 28 FGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELKNL 87
Query: 88 PILG--GRLHFVKFETTKISECLDFIHSKQ---LHRGGIHATGGGAYKFADLFKERLGVS 142
+ G G LHF++F + + + K LH + ATGGGA+KF + F+ +
Sbjct: 88 TMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTT-LCATGGGAFKFEEDFRMIADLQ 146
Query: 143 LDKEDEMDCLVAGANFL--------LKAIRHEAFTHME-GQKEFVQIDTNDLFPYLLVNI 193
L K DE+DCL+ G ++ + E T+ E QK+ +D + +P LLVN+
Sbjct: 147 LHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLD--NPYPMLLVNM 204
Query: 194 GSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNR------ 247
GSGVS++ V ++RV+GT++GGGT+ GL LLT C++F+E LE++ +GD+
Sbjct: 205 GSGVSILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLV 264
Query: 248 ------DHRHIGLSASTIASSFGKTISDKKELADYRPEDISLSLLRMISYNIGQISYLNA 301
D+ GL S +ASSFG +S +K ED++ + L I+ NIG I+ + A
Sbjct: 265 KDIYGGDYERFGLQGSAVASSFGNMMSKEKR-DSISKEDLARATLVTITNNIGSIARMCA 323
Query: 302 XXXXXXXXXXXXXXXXXHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAFMSYEK 360
+ +M +++A+ FWSKG+ +A+FL HEG+ GA+GA + K
Sbjct: 324 LNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLELFK 382
>pdb|2I7N|A Chain A, Crystal Structure Of Human Pank1 Alpha: The Catalytic Core
Domain In Complex With Accoa
pdb|2I7N|B Chain B, Crystal Structure Of Human Pank1 Alpha: The Catalytic Core
Domain In Complex With Accoa
Length = 360
Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 115/355 (32%), Positives = 186/355 (52%), Gaps = 45/355 (12%)
Query: 43 LALDIGGSLIKLVYFSRHE---------DQSIDDKRK----KTIKERLGISNGNR--RSY 87
+DIGG+L+KLVYF + +++ RK T + GI + + ++
Sbjct: 6 FGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELKNL 65
Query: 88 PILG--GRLHFVKFETTKISECLDFIHSKQ---LHRGGIHATGGGAYKFADLFKERLGVS 142
+ G G LHF++F + + + K LH + ATGGGA+KF + F+ +
Sbjct: 66 TMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTT-LCATGGGAFKFEEDFRMIADLQ 124
Query: 143 LDKEDEMDCLVAGANFL--------LKAIRHEAFTHME-GQKEFVQIDTNDLFPYLLVNI 193
L K DE+DCL+ G ++ + E T+ E QK+ +D + +P LLVN+
Sbjct: 125 LHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLD--NPYPMLLVNM 182
Query: 194 GSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNR------ 247
GSGVS++ V ++RV+GT++GGGT+ GL LLT C++F+E LE++ +GD+
Sbjct: 183 GSGVSILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLV 242
Query: 248 ------DHRHIGLSASTIASSFGKTISDKKELADYRPEDISLSLLRMISYNIGQISYLNA 301
D+ GL S +ASSFG +S +K ED++ + L I+ NIG I+ + A
Sbjct: 243 KDIYGGDYERFGLQGSAVASSFGNMMSKEKR-DSISKEDLARATLVTITNNIGSIARMCA 301
Query: 302 XXXXXXXXXXXXXXXXXHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAFM 356
+ +M +++A+ FWSKG+ +A+FL HEG+ GA+GA +
Sbjct: 302 LNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALL 356
>pdb|2EWS|A Chain A, Crystal Structure Of S.Aureus Pantothenate Kinase
pdb|2EWS|B Chain B, Crystal Structure Of S.Aureus Pantothenate Kinase
Length = 287
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 57/203 (28%)
Query: 43 LALDIGGSLIKLVYFSRHEDQSIDDKRKKTIKERLGISNGNRRSYPILGGRLHFVKFETT 102
+ +D GG+LIK+V Q D++R T K L T
Sbjct: 23 VGIDAGGTLIKIV-------QEQDNQR--TFKTEL-----------------------TK 50
Query: 103 KISECLDFIHSKQLHRGGIHATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKA 162
I + +++++ +Q+ + + TGG A + E + + E D G LLK
Sbjct: 51 NIDQVVEWLNQQQIEK--LCLTGGNA----GVIAENINIPAQIFVEFDAASQGLGILLKE 104
Query: 163 IRHEAFTHMEGQKEFVQIDTNDLFPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYW 222
H DL Y+ N+G+G S+ DG + RV G GGG
Sbjct: 105 QGH------------------DLADYIFANVGTGTSLHYFDGQSQ-RRVGGIGTGGGMIQ 145
Query: 223 GLGRLLTKCKSFDELLELSQRGD 245
GLG LL++ + +L +++Q GD
Sbjct: 146 GLGYLLSQITDYKQLTDMAQHGD 168
>pdb|2FFJ|A Chain A, Crystal Structure Of A Duf89 Family Protein (Af1104) From
Archaeoglobus Fulgidus Dsm 4304 At 2.45 A Resolution
pdb|2FFJ|B Chain B, Crystal Structure Of A Duf89 Family Protein (Af1104) From
Archaeoglobus Fulgidus Dsm 4304 At 2.45 A Resolution
Length = 300
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 19/147 (12%)
Query: 557 DAYRSIKQRENEASLAVLPDLLVELDSMSKETRLLMLIEGVLAANIFDWGSRACVDLYHK 616
D Y +K R NE + VLP L E+ S + +I ++ N FD+G + HK
Sbjct: 81 DPYAEVKARANEVARQVLP-LAKEIVEGSDDPFKTAVIVSIVGNN-FDYGVQG-----HK 133
Query: 617 GTIIEIYRMSRNKMQRPWRVDDFDAFKERMLGSGDNKPRPHKRALLFVDNSGADVVLGML 676
E + K+Q +++D + KE L SG + + DN+G ++ L
Sbjct: 134 VVEEEFRDFLKRKVQEGLKINDTERIKE--LSSG--------KVVYLTDNAG-EIFFDTL 182
Query: 677 PLARELLRRGTEVVLVANSLPALNDIT 703
L +E+ RR ++ V P ++D T
Sbjct: 183 -LXKEIKRRCEKLTAVVRGRPIISDAT 208
>pdb|1CB8|A Chain A, Chondroitinase Ac Lyase From Flavobacterium Heparinum
Length = 678
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 323 MDTISFAVQFWSKGEAQAMFLRHEGF-----LGALGAFMSYEKHGLDDLMVHQLVERFPM 377
D IS A ++W + ++ H LG + M Y K LD+ +VH+L ER
Sbjct: 84 FDQISKAFKYWYDSDPKSRNWWHNEIATPQALGEMLILMRYGKKPLDEALVHKLTERMKR 143
Query: 378 GAP 380
G P
Sbjct: 144 GEP 146
>pdb|1HM2|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-Oligosaccharide Complexes And
Mutagenesis
pdb|1HM3|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-Oligosaccharide Complexes And
Mutagenesis
pdb|1HMU|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-oligosaccharide Complexes And
Mutagenesis
pdb|1HMW|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-oligosaccharide Complexes And
Mutagenesis
Length = 700
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 323 MDTISFAVQFWSKGEAQAMFLRHEGF-----LGALGAFMSYEKHGLDDLMVHQLVERFPM 377
D IS A ++W + ++ H LG + M Y K LD+ +VH+L ER
Sbjct: 106 FDQISKAFKYWYDSDPKSRNWWHNEIATPQALGEMLILMRYGKKPLDEALVHKLTERMKR 165
Query: 378 GAP 380
G P
Sbjct: 166 GEP 168
>pdb|2O1B|A Chain A, Structure Of Aminotransferase From Staphylococcus Aureus
Length = 404
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 22/133 (16%)
Query: 32 LLPNQSDDISHLALDIGGSLIKLVYFSRHEDQSIDDKRKKTIKERLGISNGNRRSYPILG 91
L+P S IS+ +I S YF + + I+ I +GI +G P
Sbjct: 14 LVPRGSHXISNKLANIPDS-----YFGKTXGRKIEHGPLPLINXAVGIPDG-----PTPQ 63
Query: 92 GRL-HFVKFETTKISECLDFIHSKQLHRGGIHATGGGAYKFADLFKERLGVSLDKEDEMD 150
G + HF K T ++ H K+ + I D ++ + V+LDKEDE+
Sbjct: 64 GIIDHFQKALTIPENQKYGAFHGKEAFKQAI----------VDFYQRQYNVTLDKEDEV- 112
Query: 151 CLVAGANFLLKAI 163
C++ G L A+
Sbjct: 113 CILYGTKNGLVAV 125
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 320 AYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLD 364
YTM + F +FW +G+ + FL G G + +EK D
Sbjct: 297 VYTMIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPD 341
>pdb|3TLQ|A Chain A, Crystal Structure Of Eal-Like Domain Protein Ydiv
pdb|3TLQ|B Chain B, Crystal Structure Of Eal-Like Domain Protein Ydiv
Length = 242
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 165 HEAFTHM-EGQKEFVQIDTNDLFPYLLVNIGSGVSMIKVDGDGKFERV 211
+E + H+ EG+ + + ++P +L N+G+G S +K DG F RV
Sbjct: 120 NENYPHLNEGKDNRGLLSLSQVYPLVLGNLGAGNSTMKAVFDGLFTRV 167
>pdb|4ES4|A Chain A, Crystal Structure Of Ydiv And Flhd Complex
pdb|4ES4|C Chain C, Crystal Structure Of Ydiv And Flhd Complex
pdb|4ES4|E Chain E, Crystal Structure Of Ydiv And Flhd Complex
pdb|4ES4|G Chain G, Crystal Structure Of Ydiv And Flhd Complex
Length = 237
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 165 HEAFTHM-EGQKEFVQIDTNDLFPYLLVNIGSGVSMIKVDGDGKFERV 211
+E + H+ EG+ + + ++P +L N+G+G S +K DG F RV
Sbjct: 115 NENYPHLNEGKDNRGLLSLSQVYPLVLGNLGAGNSTMKAVFDGLFTRV 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,938,151
Number of Sequences: 62578
Number of extensions: 1027967
Number of successful extensions: 2461
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2426
Number of HSP's gapped (non-prelim): 17
length of query: 834
length of database: 14,973,337
effective HSP length: 107
effective length of query: 727
effective length of database: 8,277,491
effective search space: 6017735957
effective search space used: 6017735957
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)