Query 042742
Match_columns 834
No_of_seqs 370 out of 846
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:59:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02902 pantothenate kinase 100.0 4E-208 9E-213 1796.4 76.5 831 3-833 16-874 (876)
2 KOG2201 Pantothenate kinase Pa 100.0 3.9E-98 8E-103 787.2 26.7 334 19-361 2-360 (371)
3 PLN02920 pantothenate kinase 1 100.0 7.4E-92 1.6E-96 767.6 34.6 347 38-397 16-388 (398)
4 PF03630 Fumble: Fumble ; Int 100.0 1.3E-85 2.8E-90 719.6 25.2 317 41-358 1-340 (341)
5 KOG4584 Uncharacterized conser 100.0 6.1E-85 1.3E-89 678.0 26.1 342 459-828 4-348 (348)
6 COG5146 PanK Pantothenate kina 100.0 2.5E-75 5.5E-80 591.0 19.8 293 38-360 16-332 (342)
7 PTZ00297 pantothenate kinase; 100.0 1.6E-73 3.5E-78 713.0 34.0 319 42-360 1041-1446(1452)
8 TIGR00555 panK_eukar pantothen 100.0 6.7E-69 1.5E-73 572.6 27.8 264 41-357 1-279 (279)
9 PRK13317 pantothenate kinase; 100.0 1.6E-51 3.5E-56 441.1 27.5 262 41-360 3-274 (277)
10 COG1578 Uncharacterized conser 100.0 2.9E-49 6.2E-54 409.0 22.9 275 488-830 4-284 (285)
11 PF01937 DUF89: Protein of unk 100.0 1.8E-47 4E-52 423.8 21.1 311 487-825 1-353 (355)
12 KOG3870 Uncharacterized conser 100.0 1.5E-28 3.2E-33 266.1 18.9 243 552-816 135-403 (434)
13 TIGR03286 methan_mark_15 putat 99.9 6.6E-23 1.4E-27 227.5 18.9 250 40-358 144-401 (404)
14 TIGR03192 benz_CoA_bzdQ benzoy 99.8 7.5E-20 1.6E-24 196.6 20.7 237 40-359 32-287 (293)
15 TIGR02261 benz_CoA_red_D benzo 99.8 8.1E-19 1.8E-23 186.4 20.5 242 42-357 3-261 (262)
16 COG1924 Activator of 2-hydroxy 99.7 3.4E-17 7.4E-22 178.5 18.5 244 39-360 134-390 (396)
17 TIGR00241 CoA_E_activ CoA-subs 99.7 2.7E-16 6E-21 166.7 21.6 187 120-356 57-247 (248)
18 TIGR02259 benz_CoA_red_A benzo 99.7 1.3E-16 2.8E-21 175.9 16.5 192 120-357 232-431 (432)
19 PF01869 BcrAD_BadFG: BadF/Bad 98.3 2.3E-06 5E-11 91.9 9.4 197 121-357 67-270 (271)
20 PRK14878 UGMP family protein; 97.9 0.00051 1.1E-08 76.3 18.1 207 120-357 68-288 (323)
21 PRK09557 fructokinase; Reviewe 97.9 0.0023 5.1E-08 69.8 23.0 78 281-359 220-300 (301)
22 PRK14101 bifunctional glucokin 97.9 0.026 5.6E-07 68.4 33.6 77 279-356 242-326 (638)
23 TIGR00744 ROK_glcA_fam ROK fam 97.8 0.0052 1.1E-07 67.4 23.1 80 280-359 226-309 (318)
24 TIGR00329 gcp_kae1 metallohydr 97.6 0.0012 2.7E-08 72.7 15.6 190 129-344 89-293 (305)
25 PRK12408 glucokinase; Provisio 97.6 0.0027 5.8E-08 70.9 17.6 78 279-357 245-330 (336)
26 COG1940 NagC Transcriptional r 97.5 0.018 4E-07 63.1 22.2 191 129-359 96-306 (314)
27 PRK09604 UGMP family protein; 97.5 0.0031 6.7E-08 70.4 16.2 193 130-350 93-294 (332)
28 TIGR03722 arch_KAE1 universal 97.4 0.006 1.3E-07 67.8 17.7 196 131-357 88-289 (322)
29 PRK13310 N-acetyl-D-glucosamin 97.3 0.034 7.4E-07 60.8 22.3 78 280-358 220-300 (303)
30 PRK05082 N-acetylmannosamine k 97.3 0.083 1.8E-06 57.4 24.8 78 281-359 209-287 (291)
31 PRK03011 butyrate kinase; Prov 97.2 0.0036 7.7E-08 70.7 13.5 160 186-358 176-345 (358)
32 PRK15080 ethanolamine utilizat 97.2 0.028 6E-07 60.9 19.6 130 188-357 137-266 (267)
33 PRK09605 bifunctional UGMP fam 97.2 0.0065 1.4E-07 71.9 16.0 213 102-344 50-280 (535)
34 PRK00292 glk glucokinase; Prov 97.2 0.041 8.8E-07 60.7 20.7 77 280-358 228-313 (316)
35 TIGR03723 bact_gcp putative gl 97.1 0.011 2.3E-07 65.7 14.9 191 129-345 90-295 (314)
36 PF02685 Glucokinase: Glucokin 96.9 0.057 1.2E-06 60.1 18.4 263 43-359 1-314 (316)
37 PTZ00340 O-sialoglycoprotein e 96.8 0.042 9.1E-07 61.8 16.9 203 120-355 73-308 (345)
38 TIGR02529 EutJ ethanolamine ut 96.8 0.056 1.2E-06 57.7 16.8 130 188-357 110-239 (239)
39 PRK09698 D-allose kinase; Prov 96.5 0.21 4.6E-06 54.5 19.4 74 286-359 217-295 (302)
40 TIGR00749 glk glucokinase, pro 95.7 0.23 5.1E-06 54.9 15.3 37 280-316 234-271 (316)
41 COG0533 QRI7 Metal-dependent p 95.5 0.66 1.4E-05 52.0 17.3 210 120-357 74-308 (342)
42 PF02782 FGGY_C: FGGY family o 95.4 0.57 1.2E-05 47.5 15.6 76 275-358 117-194 (198)
43 TIGR01175 pilM type IV pilus a 95.1 2.5 5.4E-05 47.1 20.9 142 188-358 190-347 (348)
44 PRK13321 pantothenate kinase; 95.1 1.2 2.6E-05 47.9 17.7 97 186-315 124-224 (256)
45 PTZ00288 glucokinase 1; Provis 95.1 1.5 3.3E-05 50.6 19.3 38 280-317 298-335 (405)
46 TIGR01312 XylB D-xylulose kina 95.1 0.55 1.2E-05 54.6 16.1 156 188-359 251-436 (481)
47 PRK13318 pantothenate kinase; 95.1 1.7 3.6E-05 46.9 18.6 99 187-315 125-224 (258)
48 PRK15027 xylulokinase; Provisi 94.8 0.65 1.4E-05 54.4 15.9 127 218-359 294-433 (484)
49 PF00814 Peptidase_M22: Glycop 93.9 0.82 1.8E-05 49.7 13.0 168 128-325 69-241 (268)
50 PTZ00294 glycerol kinase-like 92.3 1.7 3.8E-05 51.2 13.6 113 232-359 328-452 (504)
51 PF11104 PilM_2: Type IV pilus 91.5 11 0.00024 42.2 18.3 149 137-330 146-298 (340)
52 PLN02669 xylulokinase 91.5 3 6.5E-05 50.1 14.5 77 275-359 415-491 (556)
53 TIGR01314 gntK_FGGY gluconate 91.3 4.4 9.5E-05 47.8 15.6 77 275-359 369-447 (505)
54 TIGR01234 L-ribulokinase L-rib 91.2 5 0.00011 47.8 15.9 76 275-359 404-482 (536)
55 PRK13320 pantothenate kinase; 90.8 19 0.00041 38.8 18.4 101 185-315 113-213 (244)
56 TIGR01311 glycerol_kin glycero 90.1 7.5 0.00016 45.7 16.0 77 275-359 367-445 (493)
57 PRK04123 ribulokinase; Provisi 90.0 6.2 0.00013 47.1 15.4 76 275-359 407-485 (548)
58 COG1548 Predicted transcriptio 89.8 4.8 0.0001 43.7 12.4 29 281-313 258-286 (330)
59 TIGR02707 butyr_kinase butyrat 89.5 3.1 6.6E-05 47.2 11.6 53 280-333 266-320 (351)
60 PRK10331 L-fuculokinase; Provi 88.8 5 0.00011 46.9 13.1 112 232-359 318-435 (470)
61 smart00732 YqgFc Likely ribonu 88.6 1 2.2E-05 40.5 5.8 19 42-60 3-21 (99)
62 PLN02295 glycerol kinase 88.6 9 0.0002 45.4 15.2 77 275-359 375-458 (512)
63 PRK00976 hypothetical protein; 88.3 8.1 0.00018 43.4 13.6 72 281-359 239-310 (326)
64 PRK00047 glpK glycerol kinase; 88.0 14 0.00031 43.5 16.4 77 275-359 371-449 (498)
65 KOG2517 Ribulose kinase and re 87.5 4 8.8E-05 48.3 11.1 77 275-359 382-460 (516)
66 TIGR00671 baf pantothenate kin 86.9 43 0.00094 36.0 17.9 102 186-317 116-218 (243)
67 PRK13331 pantothenate kinase; 85.9 57 0.0012 35.5 18.9 101 186-315 113-213 (251)
68 TIGR01175 pilM type IV pilus a 84.2 3.7 8.1E-05 45.7 8.6 52 102-153 265-320 (348)
69 PRK12440 acetate kinase; Revie 83.8 12 0.00026 43.1 12.4 138 187-333 202-348 (397)
70 PRK10719 eutA reactivating fac 83.5 5.2 0.00011 46.9 9.4 32 187-218 147-178 (475)
71 TIGR00143 hypF [NiFe] hydrogen 82.8 3.5 7.5E-05 51.0 8.1 66 275-344 628-693 (711)
72 COG0068 HypF Hydrogenase matur 81.6 3.9 8.5E-05 49.7 7.6 67 275-345 663-729 (750)
73 PF00480 ROK: ROK family; Int 81.2 18 0.00039 36.0 11.3 52 128-199 80-131 (179)
74 PRK13311 N-acetyl-D-glucosamin 78.9 32 0.00069 36.8 13.0 54 129-202 86-139 (256)
75 COG0554 GlpK Glycerol kinase [ 78.6 48 0.001 39.2 14.8 132 212-358 304-447 (499)
76 COG1070 XylB Sugar (pentulose 75.6 39 0.00085 40.0 13.7 137 207-357 295-446 (502)
77 TIGR01174 ftsA cell division p 74.4 66 0.0014 36.4 14.6 53 186-239 196-248 (371)
78 TIGR02628 fuculo_kin_coli L-fu 74.1 10 0.00022 44.3 8.2 110 234-359 323-439 (465)
79 PF11104 PilM_2: Type IV pilus 73.1 8.8 0.00019 43.0 7.1 50 102-151 257-310 (340)
80 COG3426 Butyrate kinase [Energ 72.5 36 0.00079 37.7 11.1 135 188-335 179-325 (358)
81 PF05378 Hydant_A_N: Hydantoin 67.5 6.7 0.00015 40.1 4.2 19 42-60 1-19 (176)
82 PRK07058 acetate kinase; Provi 67.4 22 0.00047 41.1 8.6 134 187-332 202-345 (396)
83 PF06723 MreB_Mbl: MreB/Mbl pr 64.1 4.5 9.7E-05 45.5 2.4 44 119-162 275-321 (326)
84 PRK12379 propionate/acetate ki 61.1 26 0.00056 40.5 7.7 138 187-332 198-344 (396)
85 PF00871 Acetate_kinase: Aceto 60.5 67 0.0015 37.1 11.0 129 187-327 200-342 (388)
86 TIGR03739 PRTRC_D PRTRC system 60.2 77 0.0017 35.2 11.2 141 186-358 167-318 (320)
87 PRK09472 ftsA cell division pr 60.1 1.7E+02 0.0037 33.9 14.4 54 186-240 204-257 (420)
88 PRK00180 acetate kinase A/prop 58.7 44 0.00095 38.8 9.1 138 187-333 203-351 (402)
89 PRK10939 autoinducer-2 (AI-2) 58.6 28 0.0006 41.4 7.8 75 277-359 379-455 (520)
90 PF07318 DUF1464: Protein of u 57.2 84 0.0018 35.7 10.7 60 296-359 251-314 (343)
91 PF02543 CmcH_NodU: Carbamoylt 57.1 29 0.00062 39.6 7.3 149 205-360 34-213 (360)
92 PRK13928 rod shape-determining 56.9 1.5E+02 0.0033 33.0 12.9 77 275-359 238-322 (336)
93 PRK07157 acetate kinase; Provi 54.5 58 0.0013 37.8 9.1 137 185-330 198-345 (400)
94 PRK12397 propionate kinase; Re 53.4 39 0.00084 39.2 7.5 137 187-331 202-347 (404)
95 COG2441 Predicted butyrate kin 52.5 56 0.0012 36.1 8.0 156 185-358 162-330 (374)
96 KOG3040 Predicted sugar phosph 51.7 1.2E+02 0.0026 32.4 10.0 138 90-232 14-175 (262)
97 PRK13928 rod shape-determining 50.5 23 0.0005 39.5 5.1 43 120-162 278-323 (336)
98 TIGR01315 5C_CHO_kinase FGGY-f 49.0 52 0.0011 39.4 8.1 88 256-359 397-489 (541)
99 TIGR00016 ackA acetate kinase. 48.6 62 0.0013 37.6 8.2 137 187-332 207-354 (404)
100 TIGR02627 rhamnulo_kin rhamnul 48.3 51 0.0011 38.4 7.7 76 275-359 355-432 (454)
101 PRK10640 rhaB rhamnulokinase; 47.0 58 0.0012 38.3 7.9 75 276-359 344-420 (471)
102 TIGR03739 PRTRC_D PRTRC system 46.6 23 0.00049 39.4 4.3 41 119-159 275-317 (320)
103 PRK00109 Holliday junction res 39.9 1.4E+02 0.0031 29.4 8.2 94 39-160 3-109 (138)
104 PF03702 UPF0075: Uncharacteri 38.8 92 0.002 35.7 7.6 139 186-330 158-308 (364)
105 PF00349 Hexokinase_1: Hexokin 34.4 35 0.00075 35.9 3.1 29 32-60 55-83 (206)
106 PRK13325 bifunctional biotin-- 34.0 9.7E+02 0.021 29.4 17.9 33 26-58 324-356 (592)
107 KOG2707 Predicted metalloprote 32.3 8.5E+02 0.018 28.2 14.5 174 129-323 123-323 (405)
108 PRK13930 rod shape-determining 31.0 49 0.0011 36.6 3.8 43 120-162 283-328 (335)
109 PRK13327 pantothenate kinase; 30.3 2.9E+02 0.0062 29.9 9.3 97 186-315 112-210 (242)
110 PRK13930 rod shape-determining 29.5 5.5E+02 0.012 28.3 11.8 76 276-359 244-327 (335)
111 COG2192 Predicted carbamoyl tr 29.0 8.8E+02 0.019 29.5 13.5 79 275-359 255-334 (555)
112 PRK13929 rod-share determining 28.2 60 0.0013 36.3 3.9 43 120-162 281-326 (335)
113 PF06277 EutA: Ethanolamine ut 27.8 43 0.00094 39.5 2.7 19 39-57 2-20 (473)
114 PF08328 ASL_C: Adenylosuccina 27.5 1.2E+02 0.0027 29.2 5.2 37 525-569 46-82 (115)
115 PRK13326 pantothenate kinase; 27.5 8.4E+02 0.018 26.7 22.0 100 186-315 126-226 (262)
116 PF02782 FGGY_C: FGGY family o 27.4 77 0.0017 32.0 4.2 45 115-159 147-193 (198)
117 PRK13322 pantothenate kinase; 27.4 3.9E+02 0.0085 28.8 9.7 97 186-315 116-216 (246)
118 TIGR01315 5C_CHO_kinase FGGY-f 25.7 96 0.0021 37.2 5.2 55 107-161 433-489 (541)
119 PRK13324 pantothenate kinase; 25.2 6.9E+02 0.015 27.3 11.2 101 186-316 124-225 (258)
120 PRK05183 hscA chaperone protei 24.9 7.5E+02 0.016 30.4 12.6 48 305-359 328-375 (616)
121 PRK13917 plasmid segregation p 24.3 1.1E+02 0.0023 34.6 5.0 43 119-161 293-335 (344)
122 COG0145 HyuA N-methylhydantoin 23.9 88 0.0019 38.8 4.5 20 41-60 3-22 (674)
123 COG0282 ackA Acetate kinase [E 23.7 1.8E+02 0.0038 33.8 6.4 129 187-327 201-341 (396)
124 PLN02666 5-oxoprolinase 23.0 88 0.0019 41.5 4.5 31 42-102 11-41 (1275)
125 PF03853 YjeF_N: YjeF-related 23.0 1.4E+02 0.0031 30.1 5.1 31 656-691 24-57 (169)
126 PRK07890 short chain dehydroge 22.9 3.7E+02 0.0081 27.8 8.5 35 657-696 5-39 (258)
127 PRK13917 plasmid segregation p 22.4 1E+03 0.022 26.9 12.3 46 303-358 289-334 (344)
128 PRK08628 short chain dehydroge 21.6 4.3E+02 0.0093 27.4 8.7 36 657-697 7-42 (258)
129 PRK13329 pantothenate kinase; 21.5 7E+02 0.015 27.0 10.3 97 186-315 119-217 (249)
130 PF02093 Gag_p30: Gag P30 core 21.5 1.4E+02 0.003 31.8 4.7 110 457-595 85-200 (211)
131 TIGR00241 CoA_E_activ CoA-subs 21.4 1E+02 0.0022 32.9 4.0 17 42-58 93-109 (248)
132 COG1797 CobB Cobyrinic acid a, 21.1 2.1E+02 0.0045 33.7 6.4 81 659-788 2-88 (451)
133 PRK09585 anmK anhydro-N-acetyl 21.0 5.5E+02 0.012 29.6 9.7 138 188-330 161-310 (365)
134 TIGR02259 benz_CoA_red_A benzo 20.5 64 0.0014 37.6 2.2 17 42-58 4-20 (432)
135 PF01548 DEDD_Tnp_IS110: Trans 20.3 2.1E+02 0.0046 27.4 5.5 54 43-126 2-57 (144)
136 TIGR01991 HscA Fe-S protein as 20.3 3.3E+02 0.0072 33.2 8.4 49 304-359 311-359 (599)
No 1
>PLN02902 pantothenate kinase
Probab=100.00 E-value=3.9e-208 Score=1796.45 Aligned_cols=831 Identities=93% Similarity=1.416 Sum_probs=765.8
Q ss_pred CCCCCCCCCcccCccccccccCCCCCCCccCCCCCCCCceEEEEeccceeEEEEEeecCCCccchhhhhhhhhhccccCC
Q 042742 3 SMHRSGSRPQLDLSKAAIQGNFEVKNPTILLPNQSDDISHLALDIGGSLIKLVYFSRHEDQSIDDKRKKTIKERLGISNG 82 (834)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~giDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (834)
|++++.+||++|++||+|.+....++|+|.||+|.+.++||++||||||+|||||++....+..++.+....+...+.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lp~~~~~i~h~~~digg~l~klvy~s~~~~~~~~~~~~~~~~~~~~~~~~ 95 (876)
T PLN02902 16 SIHRSGSRPQLDLSKAAIQGNLEERDPTILLPNQSDDISHLALDIGGSLIKLVYFSRHEDRSTDDKRKRTIKERLGITNG 95 (876)
T ss_pred ccccCCCCCCcCccccccccccccCCCCccCCCCCCcceeEEEecCCceEEEEEEeccCCcccccccccccccccccccc
Confidence 67889999999999999999999999999999999999999999999999999999875433332333333333344455
Q ss_pred CCcCCCCCCCeEEEeEeecCCHHHHHHHHHhccccc---------------CcEEEeCCccccchhHHHHHhCCCcccch
Q 042742 83 NRRSYPILGGRLHFVKFETTKISECLDFIHSKQLHR---------------GGIHATGGGAYKFADLFKERLGVSLDKED 147 (834)
Q Consensus 83 ~~~~~~~~~g~l~F~~f~t~~i~~~l~fi~~~~~~~---------------~~i~~TGGGA~k~~~~~~~~lgi~~~k~d 147 (834)
.++.++..+|+|||++|||.+|++|++|++++..+. ..|++||||||||+++|++++|++++|+|
T Consensus 96 ~~~~~~~~~grl~F~~fet~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~aTGGGA~K~~~~~~~~l~~~l~k~D 175 (876)
T PLN02902 96 NRRSYPILGGRLHFVKFETSKINECLDFISSKQLHRGGIHSWLSKAPPNGNGVIKATGGGAYKFADLFKERLGVSLDKED 175 (876)
T ss_pred ccccccCCCceEEEEEcCcccHHHHHHHHHHhcccccchhhhccccCCCCceEEEEeCCccccHHHHHHHHhCCCeeeec
Confidence 566678899999999999999999999999876532 34999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHh
Q 042742 148 EMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRL 227 (834)
Q Consensus 148 Em~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~L 227 (834)
||+|+++|++||++++++|+|+|.+++++|++.+..++||||||||||||||+||+++++|+|||||+|||||||||++|
T Consensus 176 Em~~li~Gl~fLl~~i~~e~f~~~~~~~~~~~~~~~~lyPyLLVNIGSGVSilkV~~~~~~~RVgGTsIGGGT~~GL~~L 255 (876)
T PLN02902 176 EMDCLVAGANFLLKAIRHEAFTHMEGEKEFVQIDQNDLFPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRL 255 (876)
T ss_pred HHHHHHHHHHHHHhhCcchheeeccccccccccCccCCCceEEEEcCCceEEEEEecCCcEEEecccccccHhHHHHHHH
Confidence 99999999999999999999999998888888888899999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHhcCCCC-----------C--CCCCCCCCcccccccccccccccccccCCChhHHHHHHHHHHHHHHH
Q 042742 228 LTKCKSFDELLELSQRGDN-----------R--DHRHIGLSASTIASSFGKTISDKKELADYRPEDISLSLLRMISYNIG 294 (834)
Q Consensus 228 Ltg~~~fdeil~LA~~Gd~-----------~--dy~~~GL~~d~iASsFGK~~~~~~~~~~~~~eDia~SLl~mI~~nIg 294 (834)
|||+.|||||++||++||+ + +|+.+|||+|+|||||||+....+..+++++||||+|||+||+||||
T Consensus 256 Ltg~~sFdEll~LA~~Gd~~~vDllVgDIYGg~~y~~~GL~~d~iASSFGKv~~~~~~~~~~s~eDiarSLL~mIs~NIG 335 (876)
T PLN02902 256 LTKCKSFDELLELSQRGDNSAIDMLVGDIYGGMDYSKIGLSASTIASSFGKVISENKELSDYRPEDISLSLLRMISYNIG 335 (876)
T ss_pred HcCCCCHHHHHHHHhcCCccccCeeeccccCCCCcCCCCCCcchhhhccCcccccccccccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 2 67789999999999999998666544579999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHHHHHhcccccCCchhhhhhhhhc
Q 042742 295 QISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLDDLMVHQLVER 374 (834)
Q Consensus 295 qlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAlGA~L~~~~~~~~~~~~~~~~~~ 374 (834)
|+|+|+|++||++||||+|+|||+|+++|.+|+||++|||+|+++++||||+||+|||||||++.+++.+++..++.+|+
T Consensus 336 qiA~L~A~~~~ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~~~~~~~~~~~~~~~~~~ 415 (876)
T PLN02902 336 QISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLDDLMAHQLVER 415 (876)
T ss_pred HHHHHHHHHcCCCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhcCCccccccccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccCCCCCCCcccccchhhhhhhcccccccCCCCCCCCccCCCCccccCCCCCcccccccccccceeeecc
Q 042742 375 FPMGAPYTGGRIHGPPLGDLNEKISWMEKFVLKGTEITAPVPMAPSGTTGLGGFEVPLSKGSTLRSDASALNVGVLHLVP 454 (834)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~w~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (834)
||||+||++|++|+||.+|++++++|+|||++++++++++||+.+|++|+++||++|..+..+.++++++++++|+|+++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~w~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (876)
T PLN02902 416 FPMGAPYTGGNIHGPPLGDLNEKISWMEKFVQKGTEITAPVPMGPPGTTGLGGFEVPSSRGGSLRSDASALNVGVLHLVP 495 (876)
T ss_pred hccccccccccccCCccccccccccHHHHhhhcCCcccccCCCCCccccccccccCcchhccccccccccchhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999988888888887899999999999
Q ss_pred ccccCCCcCCCCCCCCCccCCCChHHhhHHHHhhhccHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 042742 455 TLEVFPLLADPKMYEPNTIDLADRSELEYWFTVLSEHLPDLVDKAVASEGGTDDAKRRGDAFARAFSAHLARLMEEPAAY 534 (834)
Q Consensus 455 ~~~~~pll~~~~~y~p~t~d~~d~~~r~yw~~~~~~~i~~~~~~a~~~~~~~~d~~~ra~~f~~~~~~~L~~l~~~P~~~ 534 (834)
+++|||||.||.+|+|||+||+|+++|+|||+||++++|.|++||+++|+.++|+.+|+++|+++|.++|++++++|.+|
T Consensus 496 ~l~~~pLL~~~~~Y~p~t~d~~d~~~r~yW~~~f~~~i~~~~~~A~~sq~~~~da~~ra~~F~~~y~~~L~~l~~~p~a~ 575 (876)
T PLN02902 496 TLEVFPLLADPKTYEPNTIDLSDQSEREYWFKVLSEHLPDLVDKAVASEGGTDDAKRRGDAFARAFSAHLARLMEEPAAY 575 (876)
T ss_pred ccccccccCCCCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhHHHHHHHHhcCChHHHHHHHHHHhhcccccccccccccccc
Q 042742 535 GKLGLANLLELREECLREFQFLDAYRSIKQRENEASLAVLPDLLVELDSMSKETRLLMLIEGVLAANIFDWGSRACVDLY 614 (834)
Q Consensus 535 g~~~~r~l~~l~~~~l~~~g~~DPy~~~K~~~N~~Al~~l~~l~~~ld~~~~~~~l~~lik~alaGNi~Dlg~~~~~d~~ 614 (834)
|.+++|+||++||+|||++|+.|||+++|+++|+.|++++|++++++++++++++|.++|+++++||+||||+++..+++
T Consensus 576 G~~~~~~Ll~~rE~~Lre~Gf~DPY~~vK~~eN~~AL~llp~l~~~ld~~~~edrL~~aVk~aiAGNifD~Ga~~~v~l~ 655 (876)
T PLN02902 576 GKLGLANLLELREECLREFHFVDAYRSIKQRENEASLAVLPDLLAELDSMTEETRLLTLIEGVLAANIFDWGSRACVELY 655 (876)
T ss_pred CCchHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999988788999999999999999999998888776
Q ss_pred ccchHHHHHHHHHhhcCCCcccCCHHHHHHHHhcCCCCCCCCCceEEEEecCCCchhhhchHHHHHHHHhCCCEEEEEec
Q 042742 615 HKGTIIEIYRMSRNKMQRPWRVDDFDAFKERMLGSGDNKPRPHKRALLFVDNSGADVVLGMLPLARELLRRGTEVVLVAN 694 (834)
Q Consensus 615 ~~~~l~~~~~~~~~~l~r~w~vDd~d~~~~~L~~~~~~~~~~~k~vl~~~DNAG~EIV~DllpLa~eLl~~G~kVil~vK 694 (834)
+.+...++++...+.+++||.+||+++|+++|++..+.+.+++|+++||+||||+|||||++||+|+|+++|++|+++||
T Consensus 656 ~~~~~~~~~~~~~~~~~rpw~iDD~d~f~erL~~~~~~~~~~~KkvLyf~DNAGaEIVLD~LpLiRELl~rgtkV~lavn 735 (876)
T PLN02902 656 HKGTIIEIYRMSRNKMQRPWRVDDFDAFKERMLGSGGKKPKPHKRALLFVDNSGADVVLGMLPLARELLRRGTEVVLVAN 735 (876)
T ss_pred cccchhhHHHHHHHhhcCCCccCCHHHHHHHHhhcccccCCCccEEEEEecCCCCceecChHHHHHHHHHcCCEEEEEEC
Confidence 55555556666666679999999999999999742223345799999999999999999999999999999999999999
Q ss_pred CccceeccchhhHHHHHHHHHhhChhHHHHHHhCCchhhhhhhccCCCCCCCCCcceEEEeCCCCCCCcCcccCCHHHHH
Q 042742 695 SLPALNDITAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMINTLDGSKENSPSVPLMVVENGCGSPCIDLRQVSSELAA 774 (834)
Q Consensus 695 ~~P~iNDvT~~Dl~~ll~~la~~~~~l~~A~~~G~~~~d~~~~~~~~~~~~~~~~~l~Vi~sG~~~pgldL~~vS~el~~ 774 (834)
+.|+|||||++|+..++++++.+|+.++.|++.|+.+++.+++..+..+..+.+..++|++||+.+||+||+++|+||++
T Consensus 736 g~PiINDvT~eDl~~~~~~~a~~~~~l~~A~~aG~~~~~~~~~ld~~~~~~~~~~~l~VV~SG~~sPGidL~rvS~E~~~ 815 (876)
T PLN02902 736 SLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMVNTDDGSKDDSTSVPLMVVENGCGSPCIDLRQVSSELAA 815 (876)
T ss_pred CCCchhhhhHHHHHHHHHHHhhcccHHHHHHHhcccccccccccccccccccccceEEEEcCCCCCCCcChHHCCHHHHH
Confidence 99999999999999999999999999999999885444443333222222233446899999999999999999999999
Q ss_pred HhccCcEEEEecCCCcccccccccccccchhhhhccCHHHHHHhcCCcceeeEEEecCC
Q 042742 775 AAKNADLIILEGMGRALHTNFNARFKCEALKLAMVKNQRLAEKLIKGNIYDCVCRYEPA 833 (834)
Q Consensus 775 ~l~~ADLVI~KGmgn~ihtN~ea~~~~~~l~L~~vKc~~vA~~l~G~~~~d~V~k~e~~ 833 (834)
++++|||||+|||||+|||||+|+|+||+||||||||+|+|++||||++||||||||++
T Consensus 816 a~~~ADLIIaKGMGRaihTN~~a~f~cd~LklamiK~~~lA~~L~gG~~ydcV~k~e~~ 874 (876)
T PLN02902 816 AAKDADLIVLEGMGRALHTNFNARFKCEALKLAMVKNQRLAEKLINGNIYDCVCRYEPA 874 (876)
T ss_pred HhcCCCEEEEcCcccccccccccceecchhHHhHhccHHHHhhccCCceEEEEEecccC
Confidence 99999999999999999999999999999999999999999998899999999999985
No 2
>KOG2201 consensus Pantothenate kinase PanK and related proteins [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.9e-98 Score=787.23 Aligned_cols=334 Identities=58% Similarity=0.923 Sum_probs=301.1
Q ss_pred cccccCCCCCCCccCCCCCCCCceEEEEeccceeEEEEEeecCCCccchhhhhhhhhhccccCCCCcCCCCCCCeEEEeE
Q 042742 19 AIQGNFEVKNPTILLPNQSDDISHLALDIGGSLIKLVYFSRHEDQSIDDKRKKTIKERLGISNGNRRSYPILGGRLHFVK 98 (834)
Q Consensus 19 ~~~~~~~~~~~~i~l~~~~~~~~~~giDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~ 98 (834)
.|++.....+++|.| ++.+.++|||+||||||+|+|||++.+..+.+.. +..+++.+.+.++..+++|||++
T Consensus 2 ~i~~~~~~~~~~i~~-~~~~~~~~~~~DigGtl~KlvY~s~~~~~~~~~~-------~~~~~n~~~~~~~~~~~rl~~~~ 73 (371)
T KOG2201|consen 2 RIQQNEISFDPDIIL-NNKPMISHFAMDIGGTLVKLVYFSPVDISPEEEE-------SEVILNGAYGKTGYRDGRLHFIN 73 (371)
T ss_pred ccccccccCCcchhc-cccccCceEEEecCCcEEEEEEEecCCCCcchhh-------hhcccccccccccccccEEEEEE
Confidence 455666678899998 7778999999999999999999998865443221 22255666666778899999999
Q ss_pred eecCCHHHHHHHHHhccccc---------CcEEEeCCccccchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceE
Q 042742 99 FETTKISECLDFIHSKQLHR---------GGIHATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFT 169 (834)
Q Consensus 99 f~t~~i~~~l~fi~~~~~~~---------~~i~~TGGGA~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~ 169 (834)
|++.+|+.||+||+.+..+. ..|+|||||||||+++|++.+++++.|+|||+|+|+|++|+++++|+||||
T Consensus 74 ~e~~~~~~~L~Fi~~~~~~~~~k~~~~~~~~i~aTGGGA~Kf~d~~~~~l~v~l~k~Dem~~LI~G~~f~l~~i~~E~ft 153 (371)
T KOG2201|consen 74 FETFKIDGCLNFIRFNITDHPVKNFSKLTTVICATGGGAYKFEDLFREILDVKLDKEDEMDCLIKGLNFLLSNIPAECFT 153 (371)
T ss_pred eeecCccchhHHhhcchhhccccccccceeEEEEeCCcceeHHHHHHHHhCceEeehhHHHHHHhhhHHHHhcCccceEE
Confidence 99999999999999876544 139999999999999999999999999999999999999999999999999
Q ss_pred eecCceeeee--cC--CCCCccEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCC
Q 042742 170 HMEGQKEFVQ--ID--TNDLFPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGD 245 (834)
Q Consensus 170 ~~~~~~~~~~--~~--~~~~~PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd 245 (834)
|.+++.+.+. .. .+++||||||||||||||+||+++++|+||||||+||||||||++|||||++|||+++||++||
T Consensus 154 y~~~~~~~~~~~~~~~~d~~yPyLLVNIGSGVSIlkV~~~~~feRvgGsSlGGGTf~GL~~LLTg~~sfdE~LelA~~Gd 233 (371)
T KOG2201|consen 154 YENDEDEEVEFQTNFCLDSPYPYLLVNIGSGVSILKVDGPDNFERVGGSSLGGGTFLGLGSLLTGCKSFDELLELASRGD 233 (371)
T ss_pred EecCCCcceecccCCccCCCCceEEEEcCCCeEEEEEecCCceeEecccccCCcchhhhHhHhcCCCCHHHHHHHHhcCC
Confidence 9997655442 21 3569999999999999999999999999999999999999999999999999999999999999
Q ss_pred C------------CCCCCCCCCcccccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEec
Q 042742 246 N------------RDHRHIGLSASTIASSFGKTISDKKELADYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGG 313 (834)
Q Consensus 246 ~------------~dy~~~GL~~d~iASsFGK~~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G 313 (834)
| ++|+++|||+++|||||||+...+++. .+++||||+|||.||+|||||||||+|+++|++||||+|
T Consensus 234 ~~~vD~LV~DIYGg~y~~fGL~~~~iASSFGk~~~~eK~~-~~s~eDia~SlL~mIsnNIGqiAyl~A~~~ni~rV~FgG 312 (371)
T KOG2201|consen 234 NRNVDMLVRDIYGGDYSRFGLKGDLIASSFGKVIRKEKEL-SVSKEDIARSLLRMISNNIGQIAYLCALNENIKRVYFGG 312 (371)
T ss_pred CchhhhhhhhccCccHhhcCCChhHHHHHHHHHhhccccc-ccChHHHHHHHHHHHHhhHHHHHHHHHHHhCccEEEEee
Confidence 9 568999999999999999999887653 599999999999999999999999999999999999999
Q ss_pred ccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHHHHHhccccc
Q 042742 314 FFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAFMSYEKH 361 (834)
Q Consensus 314 ~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAlGA~L~~~~~ 361 (834)
+|+|+||++|++|+||++|||+|+++|+|||||||+||+||||++...
T Consensus 313 ~fiR~~~itM~tLsyAi~fWSkG~~kAlFLrHEGYlGalGAfL~~~~~ 360 (371)
T KOG2201|consen 313 FFIRGHPITMKTLSYAINFWSKGELKALFLRHEGYLGALGAFLSYELQ 360 (371)
T ss_pred eEEecCceehHHHHHHHHHhccchHHhHhhhccchhHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999987543
No 3
>PLN02920 pantothenate kinase 1
Probab=100.00 E-value=7.4e-92 Score=767.57 Aligned_cols=347 Identities=76% Similarity=1.179 Sum_probs=313.8
Q ss_pred CCCceEEEEeccceeEEEEEeecCCCccchhhhhhhhhhccccCCCCcCCCCCCCeEEEeEeecCCHHHHHHHHHhcccc
Q 042742 38 DDISHLALDIGGSLIKLVYFSRHEDQSIDDKRKKTIKERLGISNGNRRSYPILGGRLHFVKFETTKISECLDFIHSKQLH 117 (834)
Q Consensus 38 ~~~~~~giDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~~i~~~l~fi~~~~~~ 117 (834)
..++||||||||||+|+|||++....+.... +......+..+|+|||++|||++|++|++||+++.++
T Consensus 16 ~~~~~~a~Diggsl~Klvy~~~~~~~~~~~~------------~~~~~~~~~~~g~l~F~~F~T~~i~~~i~fl~~~~~~ 83 (398)
T PLN02920 16 IQISHLALDIGGSLIKLVYFSRNSGDSEDPR------------NDSSVKSDGVNGRLHFAKFETRKINDCLEFISSNKLH 83 (398)
T ss_pred cceeEEEEEcCCceEEEEEEeccCCcccccc------------ccccccccCCCceEEEEEecccCHHHHHHHHHhcccc
Confidence 5689999999999999999997653211100 0011123567999999999999999999999987543
Q ss_pred c-------------CcEEEeCCccccchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCceeeeecCCCC
Q 042742 118 R-------------GGIHATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTND 184 (834)
Q Consensus 118 ~-------------~~i~~TGGGA~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~ 184 (834)
. ..|++|||||+||++.|++.++++++|+|||+|+++|++||++++|+|+|+|.+++++|++.+..+
T Consensus 84 ~~~~~~~~~~~~~~~~i~~TGGGA~k~~~~~~~~~~i~~~k~DEm~~li~Gl~fLl~~~~~e~f~y~~~~~~~~~~~~~~ 163 (398)
T PLN02920 84 HGGFQHHENPTHDKNFIKATGGGAYKFADLFKEKLGISLDKEDEMDCLVTGANFLLKAVHHEAFTYLDGQKEFVQIDHND 163 (398)
T ss_pred ccccccccccCCCceEEEEECCcHHHHHHHHHhhhCCCceeecHHHHHHHHHHHHHhhCCcceeEeccCcccccccCccc
Confidence 1 349999999999999999999999999999999999999999999999999999999999888889
Q ss_pred CccEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCC-----------C--CCCC
Q 042742 185 LFPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDN-----------R--DHRH 251 (834)
Q Consensus 185 ~~PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~-----------~--dy~~ 251 (834)
+||||||||||||||+||+++++|+|||||+|||||||||++||||++|||||++||++||+ + +|..
T Consensus 164 lyPyLLVNIGSGVSilkV~~~~~~~RVgGTsIGGGT~~GL~~LLtg~~sfdEll~lA~~Gd~~nvDllVgDIYGg~~y~~ 243 (398)
T PLN02920 164 LYPYLLVNIGSGVSMIKVDGDGKFERVSGTSVGGGTFWGLGKLLTKCKSFDELLELSHQGNNRVIDMLVGDIYGGMDYSK 243 (398)
T ss_pred cCceEEEEcCCCEEEEEEeCCCcEEEEcccccchHhHHHHHHHHcCCCCHHHHHHHHhCCCccccCceeccccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998 2 5778
Q ss_pred CCCCcccccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHh
Q 042742 252 IGLSASTIASSFGKTISDKKELADYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQ 331 (834)
Q Consensus 252 ~GL~~d~iASsFGK~~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~ 331 (834)
+|||+|+|||||||+...++..+++++||||+|||.||+|||||+|+|+|+++|++||||+|+|+|+|+.+|++|++|++
T Consensus 244 ~gL~~d~iASsFGKv~~~~~~~~~~s~eDia~SLL~mVs~nIgqiA~L~A~~~~ik~Ivf~G~fir~~~~tm~~ls~a~~ 323 (398)
T PLN02920 244 IGLSSTTIASSFGKAISDNKELEDYKPEDVARSLLRMISNNIGQISYLNALRFGLKRIFFGGFFIRGHSYTMDTISVAVH 323 (398)
T ss_pred CCCCccceeeccCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeecccCcHHHHHHHHHHHH
Confidence 99999999999999986554446799999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCceEeeccCCchhhHHHHHhcccccCCchhhhhhhhhccCCCCCCCCCccCCCCCCCcccc
Q 042742 332 FWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPYTGGRIHGPPLGDLNEK 397 (834)
Q Consensus 332 fws~g~~~a~Fl~h~gy~GAlGA~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (834)
|||+++++++||||+||+||||||+++.+++++++.++++++..++ ++++++.+|+||..|++++
T Consensus 324 fwS~g~~ka~FLrHeGYlGAlGAfl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 388 (398)
T PLN02920 324 FWSKGEAKAMFLRHEGFLGALGAFMSYEKHSLDDLMVNQVVQLPVN-ASSGTDTNHNPLTGDLNDS 388 (398)
T ss_pred HhccCceeEEEecCcchhHHHHHHHhccccccccccchhhhhcccc-CCCCCCcccCCCccccccc
Confidence 9999999999999999999999999999999999999997775555 5556999999999999876
No 4
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=100.00 E-value=1.3e-85 Score=719.56 Aligned_cols=317 Identities=55% Similarity=0.935 Sum_probs=256.4
Q ss_pred ceEEEEeccceeEEEEEeecCCCccchhhhhhhhhhccccCCCCcCCCCCCCeEEEeEeecCCHHHHHHHHHhccc----
Q 042742 41 SHLALDIGGSLIKLVYFSRHEDQSIDDKRKKTIKERLGISNGNRRSYPILGGRLHFVKFETTKISECLDFIHSKQL---- 116 (834)
Q Consensus 41 ~~~giDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~~i~~~l~fi~~~~~---- 116 (834)
+||||||||||||||||++.+..+..........+.... .......+..+|+|||++|||++||+|++|++++..
T Consensus 1 ~~faiDIGGTL~KlVYfs~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~L~Fi~FeT~~ie~~i~fi~~~~~~~~~ 79 (341)
T PF03630_consen 1 SHFAIDIGGTLVKLVYFSPVDSSPDNQDKEDDSLRSLRR-EMHEIESKERGGRLHFIKFETKNIEECIDFIKENILEHKG 79 (341)
T ss_dssp -EEEEEE-SSEEEEEEEEESS--CHHHHHCHHHHHHHHH--EEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHS--S-TT
T ss_pred CeEEEEcCCceEEEEEEeecCCCcccccccccchhhhhh-hhccccccCcCCEEEEEEechhhHHHHHHHHHHhhhhccc
Confidence 599999999999999999876432211111000000000 000112256789999999999999999999999654
Q ss_pred ---ccCcEEEeCCccccchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCc-e---eeeecCCCCCccEE
Q 042742 117 ---HRGGIHATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQ-K---EFVQIDTNDLFPYL 189 (834)
Q Consensus 117 ---~~~~i~~TGGGA~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~-~---~~~~~~~~~~~PyL 189 (834)
....|++|||||+||+++|++++|++++|+|||+|+++|++||++++|+|+|+|++.. . ++.+.+..++||||
T Consensus 80 ~~~~~~~I~aTGGGA~Ky~~~~~~~Lgv~v~K~DEm~clI~Gl~fLl~~i~~E~f~y~~~~~~~~~~~~~~~~~~~~Pyl 159 (341)
T PF03630_consen 80 ISQKITKICATGGGAFKYADLFKEKLGVEVQKEDEMECLIKGLNFLLKNIPDEVFTYDNDEDPEKFEKVPIDNSDIYPYL 159 (341)
T ss_dssp GGGCSSEEEEESTTHHHHHCHHHCTSTSEEEE--HHHHHHHHHHHHHHTTB-SEEEEETTTSTTT-EEEEETTSS-SSEE
T ss_pred cCccceEEEEeCCcHHHHHHHHHHhcCCCeeEehHHHHHHhhHHHHHhcCCcceEEEecCCCcceecccccCCCCCCcEE
Confidence 2245999999999999999999999999999999999999999999999999999643 1 23466788999999
Q ss_pred EEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCC------------CCCCCCCCCcc
Q 042742 190 LVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDN------------RDHRHIGLSAS 257 (834)
Q Consensus 190 lVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~------------~dy~~~GL~~d 257 (834)
||||||||||++|+++++|+|||||+|||||||||++||||++|||||++||++||+ .+|..+|||+|
T Consensus 160 lvniGsGvSi~~v~~~~~~~rvgGs~iGGgT~~GL~~llt~~~~~~e~~~la~~G~~~~vDllV~DIyg~~y~~~~L~~~ 239 (341)
T PF03630_consen 160 LVNIGSGVSILKVEGPNQFERVGGSSIGGGTFWGLCSLLTGCKSFDEILELAKKGDNSNVDLLVGDIYGGDYNKIGLPGD 239 (341)
T ss_dssp EEEESSSEEEEEEEETTEEEEEEEES-SHHHHHHHHHHHH---SHHHHHHHHHH--GGGTSEEHHHHHSS-BGGGTB-TT
T ss_pred EEEcCCceEEEEEeCCCceEEEeccccchHhHHHHHHHhcCCCCHHHHHHHhcCCCccccCceeeeccCCCcccCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999998 45889999999
Q ss_pred cccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhccCCC
Q 042742 258 TIASSFGKTISDKKELADYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGE 337 (834)
Q Consensus 258 ~iASsFGK~~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~ 337 (834)
+|||||||+....+..+++++||+|+|||+||+|||||+|+++|++||++||||+|+|+++|+++|+++++|++|||+++
T Consensus 240 ~~AssFGk~~~~~~~~~~~~~~Dia~sll~mv~~nIg~la~l~A~~~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~ 319 (341)
T PF03630_consen 240 LTASSFGKVQSKAKRKDSFSKEDIAKSLLNMVSNNIGQLAYLHAKIHGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGE 319 (341)
T ss_dssp SEEETTCCGGSHHHH-CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS
T ss_pred HHHhhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccccCCHHHHHHHHHHHHHhccCC
Confidence 99999999987655456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccCCchhhHHHHHhcc
Q 042742 338 AQAMFLRHEGFLGALGAFMSY 358 (834)
Q Consensus 338 ~~a~Fl~h~gy~GAlGA~L~~ 358 (834)
++++|++|+||+|||||||++
T Consensus 320 ~~~~fl~h~gy~galGa~l~~ 340 (341)
T PF03630_consen 320 LKALFLRHEGYLGALGAFLKH 340 (341)
T ss_dssp -EEEEETTTTSHHHHHHHHTH
T ss_pred ceEEEecCCchhHHHHHHHhc
Confidence 999999999999999999964
No 5
>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=6.1e-85 Score=678.04 Aligned_cols=342 Identities=48% Similarity=0.793 Sum_probs=323.2
Q ss_pred CCCcCCCCCCCCCccCC-CChHHhhHHHHhhhccHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCcccch
Q 042742 459 FPLLADPKMYEPNTIDL-ADRSELEYWFTVLSEHLPDLVDKAVASEGGTDDAKRRGDAFARAFSAHLARLMEEPAAYGKL 537 (834)
Q Consensus 459 ~pll~~~~~y~p~t~d~-~d~~~r~yw~~~~~~~i~~~~~~a~~~~~~~~d~~~ra~~f~~~~~~~L~~l~~~P~~~g~~ 537 (834)
-+++.+|..|+|+|.|+ .|.+++.|||+||.++||.|+++|+++++.++|+++||++|+++|..+|++++++|.+||.+
T Consensus 4 s~~~~~~~~y~p~t~d~~k~~~a~~~Wi~~f~~~ip~f~krA~asq~~~~DA~~RAe~F~~~y~~~Le~lk~~P~a~G~~ 83 (348)
T KOG4584|consen 4 SNYRACTIPYRFPTDDLNKDTPAEIYWINVFSNSIPSFKKRAEASQENVPDAPARAEKFAQRYAGILEDLKKDPEAYGGP 83 (348)
T ss_pred cccccCCCCCCCCCCCccccchhhhHHHHHHHHHhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHhChHhcCCC
Confidence 46888999999999999 89999999999999999999999999999999999999999999999999999999999973
Q ss_pred -hhhhHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhHHHHHHHHhcCCh-HHHHHHHHHHhhccccccccccccccccc
Q 042742 538 -GLANLLELREECLREFQFLDAYRSIKQRENEASLAVLPDLLVELDSMSK-ETRLLMLIEGVLAANIFDWGSRACVDLYH 615 (834)
Q Consensus 538 -~~r~l~~l~~~~l~~~g~~DPy~~~K~~~N~~Al~~l~~l~~~ld~~~~-~~~l~~lik~alaGNi~Dlg~~~~~d~~~ 615 (834)
..+.|+++||+|+|++||.|||+++|++||..|++.+|.+++.+|++.+ +.|+++++||.+||||||||+++...+++
T Consensus 84 ~~g~~Ll~lRE~~LrE~gF~Diy~kvK~~ENa~Aia~fP~vv~~lDal~dE~~Rle~LvrGilAGNiFDwGa~~~~~il~ 163 (348)
T KOG4584|consen 84 PLGINLLRLREQILRELGFRDIYKKVKDEENAKAIALFPQVVRLLDALEDEGTRLENLVRGILAGNIFDWGAKAVVKILE 163 (348)
T ss_pred cchHHHHHHHHHHHHHhCCccHHHHHHHhhhhhHHHHhHHHHHHHhhhcchhHHHHHHHHHHHhcchhhhHHHHHHHHHh
Confidence 3445999999999999999999999999999999999999999999985 56999999999999999999999988888
Q ss_pred cchHHHHHHHHHhhcCCCcccCCHHHHHHHHhcCCCCCCCCCceEEEEecCCCchhhhchHHHHHHHHhCCCEEEEEecC
Q 042742 616 KGTIIEIYRMSRNKMQRPWRVDDFDAFKERMLGSGDNKPRPHKRALLFVDNSGADVVLGMLPLARELLRRGTEVVLVANS 695 (834)
Q Consensus 616 ~~~l~~~~~~~~~~l~r~w~vDd~d~~~~~L~~~~~~~~~~~k~vl~~~DNAG~EIV~DllpLa~eLl~~G~kVil~vK~ 695 (834)
.++.+.+.+......+|||++||++.|.++|++ +|||++++|+||||+||++|++||+|+|+++|++|++++++
T Consensus 164 ~~~~f~f~~a~~~l~~RPWl~D~ld~f~~r~~~------~p~K~~lif~DNSG~DvILGilPf~Rellr~gt~vil~ans 237 (348)
T KOG4584|consen 164 SASVFGFLAALQNLESRPWLVDDLDSFLARLKG------KPHKCALIFVDNSGFDVILGILPFARELLRRGTEVILCANS 237 (348)
T ss_pred ccccchHHHHHhhhhcCCeeeccHHHHHHHhcC------CCcceEEEEecCCCcceeeeecHHHHHHHhCCCeEEEEecC
Confidence 887775544334444999999999999999974 69999999999999999999999999999999999999999
Q ss_pred ccceeccchhhHHHHHHHHHhhChhHHHHHHhCCchhhhhhhccCCCCCCCCCcceEEEeCCCCCCCcCcccCCHHHHHH
Q 042742 696 LPALNDITAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMINTLDGSKENSPSVPLMVVENGCGSPCIDLRQVSSELAAA 775 (834)
Q Consensus 696 ~P~iNDvT~~Dl~~ll~~la~~~~~l~~A~~~G~~~~d~~~~~~~~~~~~~~~~~l~Vi~sG~~~pgldL~~vS~el~~~ 775 (834)
.|++||||+.|+..+++.++.+|+.+..|++.| ++.++.||+.+||+||+|+|+||+.+
T Consensus 238 ~palNdvt~~el~~l~~~~~~~~~~l~~~~~~~---------------------~ll~~~~G~~~pciDlrrvsqeLa~l 296 (348)
T KOG4584|consen 238 SPALNDVTYSELKELAAELANDCNVLLKAIDTG---------------------QLLVVQNGQDSPCIDLRRVSQELAYL 296 (348)
T ss_pred cchhccccHHHHHHHHHhhccCChHHHHHhhhc---------------------ceEEeecCCCCceeeHHhhhHHHHHH
Confidence 999999999999999999999999988888777 78999999999999999999999999
Q ss_pred hccCcEEEEecCCCcccccccccccccchhhhhccCHHHHHHhcCCcceeeEE
Q 042742 776 AKNADLIILEGMGRALHTNFNARFKCEALKLAMVKNQRLAEKLIKGNIYDCVC 828 (834)
Q Consensus 776 l~~ADLVI~KGmgn~ihtN~ea~~~~~~l~L~~vKc~~vA~~l~G~~~~d~V~ 828 (834)
.++|||||++||||++||||+++|+|++||++|+||.|||++| ||++|+|||
T Consensus 297 ~~daDLVViEGMGRalhTN~~aqf~CeSLK~avik~~wlA~~L-Ggrlf~vVf 348 (348)
T KOG4584|consen 297 SSDADLVVIEGMGRALHTNLNAQFKCESLKLAVIKNLWLAERL-GGRLFSVVF 348 (348)
T ss_pred hcCCCEEEEeccchhhhhhhhhhhcccHhHHHHHhhHHHHHHh-CCchheecC
Confidence 9999999999999999999999999999999999999999998 999999997
No 6
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=100.00 E-value=2.5e-75 Score=590.98 Aligned_cols=293 Identities=44% Similarity=0.770 Sum_probs=266.7
Q ss_pred CCCceEEEEeccceeEEEEEeecCCCccchhhhhhhhhhccccCCCCcCCCCCCCeEEEeEeecCCHHHHHHHHHhc---
Q 042742 38 DDISHLALDIGGSLIKLVYFSRHEDQSIDDKRKKTIKERLGISNGNRRSYPILGGRLHFVKFETTKISECLDFIHSK--- 114 (834)
Q Consensus 38 ~~~~~~giDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~~i~~~l~fi~~~--- 114 (834)
..+.++||||||||+|+|| +|.. ..|+.|++++|.+||+|++|+.+.
T Consensus 16 ~n~~~vaiDiGGtLaKvv~-sp~~-----------------------------snrl~F~t~eT~kId~~ve~l~~li~~ 65 (342)
T COG5146 16 NNVMKVAIDIGGTLAKVVQ-SPSQ-----------------------------SNRLTFKTEETKKIDQVVEWLNNLIQQ 65 (342)
T ss_pred cceEEEEEecCceeeeeee-Cccc-----------------------------ccceeeehHhhhhHHHHHHHHHHHHHH
Confidence 4688999999999999999 5321 237999999999999999999731
Q ss_pred ----ccccCcEEEeCCccccchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCcee--ee--ecCCCCCc
Q 042742 115 ----QLHRGGIHATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKE--FV--QIDTNDLF 186 (834)
Q Consensus 115 ----~~~~~~i~~TGGGA~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~--~~--~~~~~~~~ 186 (834)
.+....+.+||||||||.|...+.+.+++.+++||+|++.|.+|+..+||.|+|++.+...+ +. .-+.+++|
T Consensus 66 h~k~C~~~~~liatGGga~kfyd~m~~~~~ikv~r~~eme~li~gl~~fv~~IP~evFv~~d~~~e~~~~~~~~~~h~ly 145 (342)
T COG5146 66 HEKLCLTKITLIATGGGAYKFYDRMSKQLDIKVIRENEMEILINGLNYFVINIPAEVFVEFDAASEGLGILLKEQGHDLY 145 (342)
T ss_pred HHhhhhheeeEEecCCcchhhHHHHhhhccceeeecchHHHHHhcccceeeeccHHHeeeeccccchhhhhhhhcccccc
Confidence 12223489999999999999999999999999999999999999999999999999985433 22 11256899
Q ss_pred cEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCC------------CCCCCCCC
Q 042742 187 PYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDN------------RDHRHIGL 254 (834)
Q Consensus 187 PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~------------~dy~~~GL 254 (834)
|||+|||||||||+||+++++|+||||+++||||+|||.+|||+.++||||+++|+.||| .||..+||
T Consensus 146 pyilvNiGsGvSilkvtgpsqf~RvGGsslGGGtlwGLlsLlt~a~~ydqmld~aq~GDn~svDmlVgdIYg~dy~~~gl 225 (342)
T COG5146 146 PYILVNIGSGVSILKVTGPSQFERVGGSSLGGGTLWGLLSLLTQATDYDQMLDMAQHGDNNSVDMLVGDIYGDDYEEPGL 225 (342)
T ss_pred ceeeEeccCCeEEEEecCcchhccccccccCcchHHHHHHHHcccccHHHHHHHHhcCCCccceeeehhhccCccccCCC
Confidence 999999999999999999999999999999999999999999999999999999999998 56899999
Q ss_pred Cccccccccccccccc-ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhc
Q 042742 255 SASTIASSFGKTISDK-KELADYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFW 333 (834)
Q Consensus 255 ~~d~iASsFGK~~~~~-~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fw 333 (834)
++++||||||||++.- +.++++.+.||.+|||..|+||||||||++|+.+++.+|||+|+|.|||.++|.+++||+.||
T Consensus 226 ks~~iAssFGkVf~~r~k~le~F~p~di~~sll~aisnnigqiAyl~A~~~n~qNIyfgGSf~rnhl~tm~tl~Yai~~w 305 (342)
T COG5146 226 KSDLIASSFGKVFHHRDKPLEEFTPSDILASLLGAISNNIGQIAYLVAREFNTQNIYFGGSFHRNHLLTMVTLDYAILRW 305 (342)
T ss_pred CchhhHHHHHHHHHhhcCchhhcCcHHHHHHHHHHHhcchhhhHHHHHHhhccceEEEeeeeccchhhhhhhhHHHHHhh
Confidence 9999999999998654 666789999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEeeccCCchhhHHHHHhcccc
Q 042742 334 SKGEAQAMFLRHEGFLGALGAFMSYEK 360 (834)
Q Consensus 334 s~g~~~a~Fl~h~gy~GAlGA~L~~~~ 360 (834)
|++.++|+|++||||+||+|||+++..
T Consensus 306 s~~t~~ayfl~hegylGa~GAf~~~at 332 (342)
T COG5146 306 SKPTMNAYFLEHEGYLGAIGAFYLGAT 332 (342)
T ss_pred cCcccceeeeeccchhhHHHHHhhccc
Confidence 999999999999999999999998653
No 7
>PTZ00297 pantothenate kinase; Provisional
Probab=100.00 E-value=1.6e-73 Score=713.04 Aligned_cols=319 Identities=36% Similarity=0.603 Sum_probs=265.7
Q ss_pred eEEEEeccceeEEEEEeecCCCccchh---hhhhhhhhccccCCC------------CcCCCCCCCeEEEeEeecCCHHH
Q 042742 42 HLALDIGGSLIKLVYFSRHEDQSIDDK---RKKTIKERLGISNGN------------RRSYPILGGRLHFVKFETTKISE 106 (834)
Q Consensus 42 ~~giDIGGSL~Kivy~~~~~~~~~~~~---~~~~~~~~~~~~~~~------------~~~~~~~~g~l~F~~f~t~~i~~ 106 (834)
.++||||||++|+||+.|.......+. ....-.+.++....+ +...+..+|+|||++|+|++|++
T Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~f~~f~t~~i~~ 1120 (1452)
T PTZ00297 1041 PVTIDIGGTFAKIAYVQPPGGFAFPTYIVHEASSLSEKLGLRTFHFFADAEAAESELRTRPHSRVGTLRFAKIPSKQIPD 1120 (1452)
T ss_pred ceEEecCceeEEEEEEeCCCCCCCcchhhhhhhhhhhccCccccccccChHHhhhhhccCCCCCceEEEEEEecccCHHH
Confidence 499999999999999998633111100 000001111111111 11225689999999999999999
Q ss_pred HHHHHHhccc-------ccCcEEEeCCccccchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecC--cee-
Q 042742 107 CLDFIHSKQL-------HRGGIHATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEG--QKE- 176 (834)
Q Consensus 107 ~l~fi~~~~~-------~~~~i~~TGGGA~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~--~~~- 176 (834)
|++||+++.. ....|++|||||+||+++|++.+|+++.|+|||+|+++|++||++++|+|+|||+.. ++.
T Consensus 1121 ~~~~l~~~~~~~~~~~~~~~~i~~TGGGA~k~~~~~~~~~~~~~~~~dEm~~li~G~~~l~~~~~~~~f~~~~~~~~~~~ 1200 (1452)
T PTZ00297 1121 FADYLAGSHAINYYKPQYRTKVRATGGGAFKYASVAKKVLGINFSVMREMDAVVKGLNLVIRVAPESIFTVDPSTGVHHP 1200 (1452)
T ss_pred HHHHHHhhhhhcccCcCCceEEEEeCCcHHHHHHHHHHHhCCCcceecHHHHHHHHHHHHHhcCCceEEEeccccccccc
Confidence 9999997632 124599999999999999999999999999999999999999999999999999863 221
Q ss_pred -ee---ecCCCCCccEEEEEcCCceEEEEEcCC-CceEEecccccCchhHHHHHHhhcCCCCHHHHHH---HhcCCCC--
Q 042742 177 -FV---QIDTNDLFPYLLVNIGSGVSMIKVDGD-GKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLE---LSQRGDN-- 246 (834)
Q Consensus 177 -~~---~~~~~~~~PyLlVNIGSGvSiikV~~~-~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~---LA~~Gd~-- 246 (834)
.+ +.+..++||||||||||||||+||+++ ++|+|||||+|||||||||++||||++|||||++ ||++|||
T Consensus 1201 ~~~~~~~~~~~~~yp~llvNIGSGvSi~kv~~~~~~~~RvgGt~iGGGT~~GL~~llt~~~~f~e~l~~~~la~~Gd~~~ 1280 (1452)
T PTZ00297 1201 HQLVSPPGDGFSPFPCLLVNIGSGISIIKCLGPDGSHVRVGGSPIGGATFWGLVRTMTNVTSWEEVMEIMRLDGPGDNKN 1280 (1452)
T ss_pred cccccCccccCCCCceEEEEccCceEEEEEecCCCcEEEecCcccccHhHHHHHHHhcCCCCHHHHHHHHHHhhCCCccc
Confidence 11 123457999999999999999999986 6899999999999999999999999999999998 7999998
Q ss_pred -----CC-C----CC--CCCCccccccccccccccc----------------------------------------cccc
Q 042742 247 -----RD-H----RH--IGLSASTIASSFGKTISDK----------------------------------------KELA 274 (834)
Q Consensus 247 -----~d-y----~~--~GL~~d~iASsFGK~~~~~----------------------------------------~~~~ 274 (834)
+| | .. .||++++|||||||+.... +..+
T Consensus 1281 vDllVgDIyg~~~~~~~~~L~~~~iASsfGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1360 (1452)
T PTZ00297 1281 VDLLVGDIYGYNAKDLPAMLSVDTVASTFGKLGTERFYEMMRGVSTAHFSDDDAAGEILSPKALKSPTVISELPVRNGTK 1360 (1452)
T ss_pred cceEEeeccCCCcccccCCCCcceeeeccCcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 22 3 34 3899999999999996310 0123
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHHHH
Q 042742 275 DYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGA 354 (834)
Q Consensus 275 ~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAlGA 354 (834)
.+++||||+|||+||+|||||+|||+|++||++||||+|+|+|+|+.+|.+|+||++|||+|+++++||+|+||+|||||
T Consensus 1361 ~~~~~Di~~sll~~is~nIgqia~l~a~~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga 1440 (1452)
T PTZ00297 1361 KASAIDIVRSLLNMISSNVTQLAYLHSRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGC 1440 (1452)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhcccc
Q 042742 355 FMSYEK 360 (834)
Q Consensus 355 ~L~~~~ 360 (834)
+|+...
T Consensus 1441 ~~~~~~ 1446 (1452)
T PTZ00297 1441 ATLDPD 1446 (1452)
T ss_pred hhcCCC
Confidence 998654
No 8
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=100.00 E-value=6.7e-69 Score=572.61 Aligned_cols=264 Identities=50% Similarity=0.873 Sum_probs=243.5
Q ss_pred ceEEEEeccceeEEEEEeecCCCccchhhhhhhhhhccccCCCCcCCCCCCCeEEEeEeecCCHHHHHHHHHhcccc---
Q 042742 41 SHLALDIGGSLIKLVYFSRHEDQSIDDKRKKTIKERLGISNGNRRSYPILGGRLHFVKFETTKISECLDFIHSKQLH--- 117 (834)
Q Consensus 41 ~~~giDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~~i~~~l~fi~~~~~~--- 117 (834)
+|+|||||||||||||+++ ++++||.+|++.++++|++|+++....
T Consensus 1 ~~iGiDiGgT~~Kiv~~~~-------------------------------~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~ 49 (279)
T TIGR00555 1 SRIGIDIGGTLIKVVYEEP-------------------------------KGRRKFKTFETTNIDKFIEWLKNQIHRHSR 49 (279)
T ss_pred CeEEEEeCcceEEEEEEcC-------------------------------CCcEEEEEeecccHHHHHHHHHHHHHhhcC
Confidence 5899999999999999652 457999999999999999999976541
Q ss_pred cCcEEEeCCccccchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccEEEEEcCCce
Q 042742 118 RGGIHATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPYLLVNIGSGV 197 (834)
Q Consensus 118 ~~~i~~TGGGA~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGv 197 (834)
...|++|||||+||++.|...++++++|+|||+|+++|++||+++.|+ .++||||+|||||||
T Consensus 50 ~~~i~~TGgGa~k~~~~~~~~~~v~~~k~dE~~a~~~g~~~ll~~~~~-----------------~~~~p~llvnIGsGv 112 (279)
T TIGR00555 50 ITTLCATGGGAFKFAELIYESAGIQLHKFDEFDALIQGLNYLLKEEPK-----------------DDIYPYLLVNIGTGT 112 (279)
T ss_pred ceEEEEECCcHHHHHHHhccccCCcccchhHHHHHHHHHHHHhhcccC-----------------CCCCceEEEEecCCe
Confidence 244999999999999999999999999999999999999999985421 578999999999999
Q ss_pred EEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCC------------CCCCCCCCCcccccccccc
Q 042742 198 SMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDN------------RDHRHIGLSASTIASSFGK 265 (834)
Q Consensus 198 SiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~------------~dy~~~GL~~d~iASsFGK 265 (834)
||++|+++ +|+|||||+|||||||||++||||+.||+||++||++||+ .+|..+|||+|+|||||||
T Consensus 113 Si~~v~~~-~~~Rv~Gt~iGGGTf~GL~~LL~~~~~~~el~~lA~~G~~~~vDl~V~dIYg~~y~~~~L~~d~iASsfGk 191 (279)
T TIGR00555 113 SILYVDGD-NYERVGGTSLGGGTFLGLGKLLTGIQTFDELLEMAQHGDRTNVDLLVGDIYGGDYSESGLDGSLTASSFGK 191 (279)
T ss_pred EEEEEcCc-cEEEEcCccccHHHHHHHHHHHcCCCCHHHHHHHHHcCCCcccccccccccCCCCCCCCCCcceeeeccch
Confidence 99999997 9999999999999999999999999999999999999997 4578999999999999999
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccC
Q 042742 266 TISDKKELADYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRH 345 (834)
Q Consensus 266 ~~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h 345 (834)
+..+. ..+++++||||+||++||+|||||+|+++|++++++||+|+|+|++++|..|+.++++++||+ .+++|++|
T Consensus 192 v~~~~-~~~~~~~eDiAaSLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~---~~~ifp~h 267 (279)
T TIGR00555 192 VLSKH-LDQSFSPEDIAASLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFWS---KKALFLEH 267 (279)
T ss_pred hhccc-cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhcC---ceEEEECC
Confidence 98642 225799999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred CchhhHHHHHhc
Q 042742 346 EGFLGALGAFMS 357 (834)
Q Consensus 346 ~gy~GAlGA~L~ 357 (834)
++|+|||||+|.
T Consensus 268 ~~y~gAlGAaL~ 279 (279)
T TIGR00555 268 EGYSGAIGALLS 279 (279)
T ss_pred cchHHHhhhccC
Confidence 999999999973
No 9
>PRK13317 pantothenate kinase; Provisional
Probab=100.00 E-value=1.6e-51 Score=441.10 Aligned_cols=262 Identities=27% Similarity=0.458 Sum_probs=229.0
Q ss_pred ceEEEEeccceeEEEEEeecCCCccchhhhhhhhhhccccCCCCcCCCCCCCeEEEeEeecCCHHHHHHHHHhcccccCc
Q 042742 41 SHLALDIGGSLIKLVYFSRHEDQSIDDKRKKTIKERLGISNGNRRSYPILGGRLHFVKFETTKISECLDFIHSKQLHRGG 120 (834)
Q Consensus 41 ~~~giDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~~i~~~l~fi~~~~~~~~~ 120 (834)
.++|||||||+||+||++. +++++|.+|++...+.+++|+.+... ...
T Consensus 3 ~~iGIDiGstt~K~v~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~ 50 (277)
T PRK13317 3 MKIGIDAGGTLTKIVYLEE-------------------------------KKQRTFKTEYSAEGKKVIDWLINLQD-IEK 50 (277)
T ss_pred ceEEEEeCcccEEEEEEcC-------------------------------CCeEEEEeeccHHHHHHHHHhhccCC-ceE
Confidence 4799999999999999873 24688999999999999999865433 334
Q ss_pred EEEeCCccccchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccEEEEEcCCceEEE
Q 042742 121 IHATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPYLLVNIGSGVSMI 200 (834)
Q Consensus 121 i~~TGGGA~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSii 200 (834)
|++||||++++++++ .+|++++|++||+|+++|++|++++. ..+.+||++||||||+||+
T Consensus 51 i~~TG~g~~~~~~~~--~~~~~~~~v~E~~a~~~g~~~l~~~~------------------~~~~~~~~i~~iG~g~si~ 110 (277)
T PRK13317 51 ICLTGGKAGYLQQLL--NYGYPIAEFVEFEATGLGVRYLLKEE------------------GHDLNDYIFTNIGTGTSIH 110 (277)
T ss_pred EEEECcchhhhhHHH--hcCCCeeeeHHHHHHHHHHHHHHHhc------------------CCCCCcEEEEEecCceEEE
Confidence 999999999999876 47899999999999999999999642 3567899999999999999
Q ss_pred EEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCC-------CC-CC--CCCCCccccccccccccccc
Q 042742 201 KVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDN-------RD-HR--HIGLSASTIASSFGKTISDK 270 (834)
Q Consensus 201 kV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~-------~d-y~--~~GL~~d~iASsFGK~~~~~ 270 (834)
+|++ ++++|++||++||||||||++||+++.||+|+++||++||+ .| |. .-++|.+++||+|||+...
T Consensus 111 ~~~g-~~~~r~~Gt~iGGgt~~gL~~lL~~~~~~~el~~la~~g~~~~~Dl~v~dIy~~~~~~l~i~s~csvFakv~~l- 188 (277)
T PRK13317 111 YVDG-NSQRRVGGTGIGGGTIQGLSKLLTNISDYEQLIELAKHGDRNNIDLKVGDIYKGPLPPIPGDLTASNFGKVLHH- 188 (277)
T ss_pred EEeC-CceEEEccccccHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccccceeccccCCCCCCCCCceeEehhhhhhhh-
Confidence 9987 48999999999999999999999999999999999999986 22 33 2469999999999996532
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhh
Q 042742 271 KELADYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLG 350 (834)
Q Consensus 271 ~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~G 350 (834)
..+++++||||+||+.||++||+++|+++|+.+++++|+|+|+++++++..++.++ ++|+.++.+++|++|++|+|
T Consensus 189 -~~~g~~~eDIaasl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~---~~l~~~~~~~~~p~~~~~~g 264 (277)
T PRK13317 189 -LDSEFTSSDILAGVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIE---SYTKLRNCTPIFLENGGYSG 264 (277)
T ss_pred -hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHH---HHHhcCCceEEecCCCchhH
Confidence 22578999999999999999999999999999999999999988888886666555 58888899999999999999
Q ss_pred HHHHHhcccc
Q 042742 351 ALGAFMSYEK 360 (834)
Q Consensus 351 AlGA~L~~~~ 360 (834)
||||+|.+.+
T Consensus 265 AlGAaL~a~~ 274 (277)
T PRK13317 265 AIGALLLATN 274 (277)
T ss_pred HHHHHHHhhh
Confidence 9999998754
No 10
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.9e-49 Score=408.96 Aligned_cols=275 Identities=26% Similarity=0.324 Sum_probs=232.7
Q ss_pred hhccHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhh-cC--CCcccchhhhhHHHHHHHHHHHcCCCcccHHHHH
Q 042742 488 LSEHLPDLVDKAVASEGGTDDAKRRGDAFARAFSAHLARLM-EE--PAAYGKLGLANLLELREECLREFQFLDAYRSIKQ 564 (834)
Q Consensus 488 ~~~~i~~~~~~a~~~~~~~~d~~~ra~~f~~~~~~~L~~l~-~~--P~~~g~~~~r~l~~l~~~~l~~~g~~DPy~~~K~ 564 (834)
.++|+||+++|+........+++++..+-++.....|.... .+ |+..|. ++|+.+++.+|++|||++.|+
T Consensus 4 ~p~C~~C~l~q~~~~~~~~t~ded~~~~~~~~~~~lls~~y~~~~~~a~~~t-------~ihr~v~k~~g~eDPyke~K~ 76 (285)
T COG1578 4 SPECLPCLLRQAVNAVKLATDDEDLRSRIMSEALKLLSEEYGESAVPAIAGT-------LIHREVYKILGNEDPYKEYKR 76 (285)
T ss_pred cccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhCcCCCcHHHHH-------HHHHHHHHHcCCCCcHHHHHH
Confidence 47999999999988766654444343334555555555542 23 444555 889999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHhcCChHHHHHHHHHHhhccccccccccccccccccchHHHHHHHHHhhcCCCcccCCHHHHHH
Q 042742 565 RENEASLAVLPDLLVELDSMSKETRLLMLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMQRPWRVDDFDAFKE 644 (834)
Q Consensus 565 ~~N~~Al~~l~~l~~~ld~~~~~~~l~~lik~alaGNi~Dlg~~~~~d~~~~~~l~~~~~~~~~~l~r~w~vDd~d~~~~ 644 (834)
++|+.|++++|.+++.+.. ..+.|+++++++++||+||||+.+... .+ +.+...+.++.++.+||+++|.+
T Consensus 77 r~NeiA~~vl~~vr~~~~~--~~~dl~~Avk~ai~GN~iDfgv~G~~~----~~---lee~~~~~~~~~l~i~d~~k~~~ 147 (285)
T COG1578 77 RANEIALKVLPKVRENIED--TPEDLKTAVKLAIVGNVIDFGVLGFSP----FD---LEEEVEKLLDAELYIDDSPKLLE 147 (285)
T ss_pred HHHHHHHHHHHHHHhcccC--ChHHHHHHHHHHHHhcceeeccccCCH----hH---HHHHHHHhhcCcccccchHHHHH
Confidence 9999999999999985533 456899999999999999999986111 12 33434455699999999999999
Q ss_pred HHhcCCCCCCCCCceEEEEecCCCchhhhchHHHHHHHHhCCCEEEEEecCccceeccchhhHHHHHHHHHhhChhHHHH
Q 042742 645 RMLGSGDNKPRPHKRALLFVDNSGADVVLGMLPLARELLRRGTEVVLVANSLPALNDITAMELPDIVAEAAKHCDILRRA 724 (834)
Q Consensus 645 ~L~~~~~~~~~~~k~vl~~~DNAG~EIV~DllpLa~eLl~~G~kVil~vK~~P~iNDvT~~Dl~~ll~~la~~~~~l~~A 724 (834)
+|++ + +|+|++|||| ||+||++ |++.+.++|.+|+++||++|++||+|.+| |
T Consensus 148 ~l~~--------a-~VlYl~DNaG-Ei~FD~v-lie~ik~~~~~vv~vVrg~PIlnDaT~ED-----------------a 199 (285)
T COG1578 148 LLKN--------A-SVLYLTDNAG-EIVFDKV-LIEVIKELGKKVVVVVRGGPILNDATMED-----------------A 199 (285)
T ss_pred Hhcc--------C-cEEEEecCCc-cHHHHHH-HHHHHHhcCCceEEEEcCCceechhhHHH-----------------H
Confidence 9973 4 9999999999 9999998 99999999999999999999999999999 6
Q ss_pred HHhCCchhhhhhhccCCCCCCCCCcceEEEeCCCCCCCcCcccCCHHHHHHhccCcEEEEecCCCccccccccccc---c
Q 042742 725 AEAGGLLVDAMINTLDGSKENSPSVPLMVVENGCGSPCIDLRQVSSELAAAAKNADLIILEGMGRALHTNFNARFK---C 801 (834)
Q Consensus 725 ~~~G~~~~d~~~~~~~~~~~~~~~~~l~Vi~sG~~~pgldL~~vS~el~~~l~~ADLVI~KGmgn~ihtN~ea~~~---~ 801 (834)
.+.| +++. ..|++||++.+|+.|+++|.||+++|.+|||||+|||| |||++.+ .
T Consensus 200 k~~~---i~~i---------------~~vittG~~~vGi~l~d~s~Ef~~~f~~adlIIaKG~g-----NfE~LsE~~~~ 256 (285)
T COG1578 200 KEAG---IDEI---------------AKVITTGSDIVGIWLEDVSEEFREAFESADLIIAKGQG-----NFETLSEEEDK 256 (285)
T ss_pred HHcC---cchh---------------heeecCCCCcceeeHHhccHHHHHHhccCCEEEecCcc-----ccccccccCCC
Confidence 7778 5542 48999999999999999999999999999999999999 9999986 5
Q ss_pred cchhhhhccCHHHHHHhcCCcceeeEEEe
Q 042742 802 EALKLAMVKNQRLAEKLIKGNIYDCVCRY 830 (834)
Q Consensus 802 ~~l~L~~vKc~~vA~~l~G~~~~d~V~k~ 830 (834)
|+++|+.+||++||+.| |+++++.||++
T Consensus 257 piffLL~AKC~~VAr~l-gV~~G~~V~~~ 284 (285)
T COG1578 257 PIFFLLKAKCDPVAREL-GVPRGANVAKR 284 (285)
T ss_pred cEEeeecccCchHHHHh-CCCCCCeeeec
Confidence 89999999999999997 99999999985
No 11
>PF01937 DUF89: Protein of unknown function DUF89; InterPro: IPR002791 This entry contains uncharacterised proteins. Those with structural information consist of two domains: an all-alpha domain with a 3-helical bundle fold, and an alpha-beta domain in 3 layers, alpha/beta/alpha. ; PDB: 2FFJ_B 1XFI_A 2Q40_A 2G8L_B 3PT1_A.
Probab=100.00 E-value=1.8e-47 Score=423.84 Aligned_cols=311 Identities=26% Similarity=0.303 Sum_probs=231.7
Q ss_pred hhhccHHHHHHHHhhhcCC-CchHHHHHHHHHHHHHHHHHhhhcCCCc----------------ccchhhhhHHHHHHHH
Q 042742 487 VLSEHLPDLVDKAVASEGG-TDDAKRRGDAFARAFSAHLARLMEEPAA----------------YGKLGLANLLELREEC 549 (834)
Q Consensus 487 ~~~~~i~~~~~~a~~~~~~-~~d~~~ra~~f~~~~~~~L~~l~~~P~~----------------~g~~~~r~l~~l~~~~ 549 (834)
|+.+|+||+++|++..... .++++++..+..+.+...+.++..++.. +..+++...+.+++.+
T Consensus 1 T~~~c~p~il~~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~pWL~~e~ylyr~i 80 (355)
T PF01937_consen 1 TFRECLPCILTQAIDSLRRANDDAEEDIKEIIEELSKLRYELDTNKPLPPITDDGPDSEEGPTWFNAPWLFAECYLYRRI 80 (355)
T ss_dssp HHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCGHHH-HHHHHHSTT-BTTBSBHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccchHHHHHHHHHHH
Confidence 5789999999999887655 3333555555666666666566554332 2235666778999999
Q ss_pred HHHcC------CCcccHHHHHHHHHHHHHhHHHHHHHHhcCChH-HHHHHHHHHhhccccccccccccccccccchHHHH
Q 042742 550 LREFQ------FLDAYRSIKQRENEASLAVLPDLLVELDSMSKE-TRLLMLIEGVLAANIFDWGSRACVDLYHKGTIIEI 622 (834)
Q Consensus 550 l~~~g------~~DPy~~~K~~~N~~Al~~l~~l~~~ld~~~~~-~~l~~lik~alaGNi~Dlg~~~~~d~~~~~~l~~~ 622 (834)
++.+| +.|||+++|+++|+.|++.++.+.+.++++++. ++|.+++++++|||++|||+....+.. ....
T Consensus 81 ~~~~~~~~~~~~~DPf~~~K~~~~~~al~~~~~l~~~l~~~~~~~~~~~~~l~~al~GN~~Dls~~~~~~~~----~~~~ 156 (355)
T PF01937_consen 81 LEIFGYSSYLKNYDPFAEQKQESNEIALKLIPELAERLESLPDPRERFREALKLALWGNIIDLSLSPGHEVG----EFDQ 156 (355)
T ss_dssp HHHHTHSTTTTTS-TTHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHCG--CCCHTSHHCH----HHHH
T ss_pred HHhcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhcCcccCccccchhc----ccch
Confidence 99999 999999999999999999999999999888764 889999999999999999997622211 1112
Q ss_pred HHHHHhhcCCCcccCCHHHHHHHHhcCCCCCCCCCceEEEEecCCCchhhhchHHHHHHHHh--CCCEEEEEecCcc-ce
Q 042742 623 YRMSRNKMQRPWRVDDFDAFKERMLGSGDNKPRPHKRALLFVDNSGADVVLGMLPLARELLR--RGTEVVLVANSLP-AL 699 (834)
Q Consensus 623 ~~~~~~~l~r~w~vDd~d~~~~~L~~~~~~~~~~~k~vl~~~DNAG~EIV~DllpLa~eLl~--~G~kVil~vK~~P-~i 699 (834)
.....+.++++|++||+++++++|. ..++++|+||+||||+|+|+|++ ||++|++ .|.+|++|||+.| ++
T Consensus 157 ~~~~~~~~~~~~l~dd~~~~~~~l~------~~~~~~v~~v~DNaG~Elv~D~l-l~~~L~~~~~~~~V~~~vK~~P~~v 229 (355)
T PF01937_consen 157 EEEIEKALEKPILVDDSDEFWEKLE------NKKAKRVDIVLDNAGFELVFDLL-LAEFLLESGPGSKVVFHVKGIPWFV 229 (355)
T ss_dssp HHHHHHHHHSTESEE-HHHHHHHHC------TCHTSEEEEE--BTTHHHHHHHH-HHHHHHHTCTTSEEEEEEBSS--TT
T ss_pred HHHHHHhhhcCCccccHHHHHHHhh------ccCCCEEEEEEcCCCcHHHhhHH-HHHHHHHhCCCCeEEEEECCCCCee
Confidence 3345566799999999999999993 13689999999999999999999 9999999 7899999999999 99
Q ss_pred eccchhhHHHHHHHHHhhChhHHHHHHhCCchhhhhhhccCCCCCCCCCcceEEEeCCCC--CCCcCcccCCHHHHHHhc
Q 042742 700 NDITAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMINTLDGSKENSPSVPLMVVENGCG--SPCIDLRQVSSELAAAAK 777 (834)
Q Consensus 700 NDvT~~Dl~~ll~~la~~~~~l~~A~~~G~~~~d~~~~~~~~~~~~~~~~~l~Vi~sG~~--~pgldL~~vS~el~~~l~ 777 (834)
||||.+|+.|+|+.|+.++.....+...| +++.+ ..+ .++.+|.+ ++|++++++|++|++.++
T Consensus 230 nDvT~~D~~~~l~~l~~~~~~~~~~~~~~---l~~~~----------~~~--~~~~~~~~fw~~~~~~~~~~~el~~~l~ 294 (355)
T PF01937_consen 230 NDVTMEDAEWLLERLADSDDFSLSALGKG---LDKYL----------ESG--RVIVSGDDFWTPGLDLWEMSPELYEELS 294 (355)
T ss_dssp TB-BHHHHHHHHHHHH-TTTCHHHHHHTT---HHHHH----------HTS--EEEEESSCGGSSS--CCGSHHHHHHHHC
T ss_pred ccCcHHHHHHHHHHHHhcccccccccccc---hhhcc----------ccC--eEEecCCCccCCCCChHHcCHHHHHHHh
Confidence 99999999999999999875544466666 55421 122 45555655 999999999999999999
Q ss_pred cCcEEEEecCCCc--ccccccccccc-----------cchhhhhccCHHHHHHhcCCccee
Q 042742 778 NADLIILEGMGRA--LHTNFNARFKC-----------EALKLAMVKNQRLAEKLIKGNIYD 825 (834)
Q Consensus 778 ~ADLVI~KGmgn~--ihtN~ea~~~~-----------~~l~L~~vKc~~vA~~l~G~~~~d 825 (834)
+|||||+|||||| ++.|....+++ ++++|+++||+++|..+ ++++|
T Consensus 295 ~adLVI~KG~~Nyr~L~~d~~~~~t~~f~~~~~~~p~~i~~L~~~Kc~~va~~~--~~~~d 353 (355)
T PF01937_consen 295 EADLVIFKGDLNYRKLLGDRNWPPTTPFKTALGFFPAPILFLRTVKCDVVAGLL--VGQGD 353 (355)
T ss_dssp C-SEEEEEHHHHHHHHTTSCTTTTTSEHHHHTGTSS--EEEEEE--SHHHHHHH--STTTH
T ss_pred hCCEEEEeCCHHHhhhhcCcCCCCCCCccccchhHHHHHHHhHhhCCHHHhCCC--ccCcC
Confidence 9999999999944 33332222222 39999999999999996 55554
No 12
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=1.5e-28 Score=266.11 Aligned_cols=243 Identities=16% Similarity=0.209 Sum_probs=189.1
Q ss_pred HcCCCcccHHHHHHHHHHHHHhHHHHHHHHhcCCh-----HHHHHHHHHHhhccccccccccccccccccchHHHHHHHH
Q 042742 552 EFQFLDAYRSIKQRENEASLAVLPDLLVELDSMSK-----ETRLLMLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMS 626 (834)
Q Consensus 552 ~~g~~DPy~~~K~~~N~~Al~~l~~l~~~ld~~~~-----~~~l~~lik~alaGNi~Dlg~~~~~d~~~~~~l~~~~~~~ 626 (834)
++..+|||.++|++....+...+.++......+.. ...|.+++++++|||.+|++..+..+.. .+++ .++ +
T Consensus 135 ~l~~yD~F~~~K~~~~~~s~~~i~ela~~~~~l~~~~~~~~~~F~~llkisLWGN~~Dlsl~~~~~~~--~~~q-~~~-~ 210 (434)
T KOG3870|consen 135 ELKKYDYFFDQKESTLTSSLPAIEELAKRTRGLERSLESIHEVFVELLKISLWGNATDLSLNGGTESK--QNIQ-VLK-A 210 (434)
T ss_pred hhhhcChHHHHhHHHHhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhccccccccccccccc--chhH-HHH-H
Confidence 45679999999999999998887777666554331 2369999999999999999996544432 2332 333 6
Q ss_pred HhhcCCCcccCCHHHHHHHHhcCCCCCCCCCceEEEEecCCCchhhhchHHHHHHHHhCC--CEEEEEecCcc-ceeccc
Q 042742 627 RNKMQRPWRVDDFDAFKERMLGSGDNKPRPHKRALLFVDNSGADVVLGMLPLARELLRRG--TEVVLVANSLP-ALNDIT 703 (834)
Q Consensus 627 ~~~l~r~w~vDd~d~~~~~L~~~~~~~~~~~k~vl~~~DNAG~EIV~DllpLa~eLl~~G--~kVil~vK~~P-~iNDvT 703 (834)
.+.+++.+++||++.+|..|.++ +...+++|+|++||||+|++.|++ ||++|++.| ++|+||+|..| +|+|||
T Consensus 211 va~~~~~iLvnd~~~vW~~L~~~---k~s~~~rVDfVlDNaGfEL~~DLi-lAeyli~~glA~kV~fH~KaiPWFVSDvt 286 (434)
T KOG3870|consen 211 VADLDEFILVNDTEDVWSKLSNA---KHSRNGRVDFVLDNAGFELFTDLI-LAEYLISSGLATKVRFHVKAIPWFVSDVT 286 (434)
T ss_pred HHhhccceeecChHHHHHHhhcc---hhcCCceEEEEEeCCccchhHHHH-HHHHHHhccccceEEEcccCCceeeeccc
Confidence 67789999999999999999852 344678999999999999999999 999999998 89999999999 699999
Q ss_pred hhhHHHHHHHHHhhC-hhHHHHHHhCCchhhhhhhccCCCCCCCCCcceEEEeCC---CCCCCcCcccCCHHHHHHhccC
Q 042742 704 AMELPDIVAEAAKHC-DILRRAAEAGGLLVDAMINTLDGSKENSPSVPLMVVENG---CGSPCIDLRQVSSELAAAAKNA 779 (834)
Q Consensus 704 ~~Dl~~ll~~la~~~-~~l~~A~~~G~~~~d~~~~~~~~~~~~~~~~~l~Vi~sG---~~~pgldL~~vS~el~~~l~~A 779 (834)
..|+.|+++.|.++. +.++ |...- +. +++.++...+-+.- +++++..|.++.++|+..+++|
T Consensus 287 ~~Df~wll~~L~~~~~~~ls-~~g~k---~~----------~~~~~Gk~vl~~~~FWTsph~y~~M~~~~p~Ly~~L~~S 352 (434)
T KOG3870|consen 287 EKDFDWLLEFLRDHEDEELS-AFGKK---LE----------KFIKEGKIVLRPHYFWTSPHDYYRMPQVAPDLYDDLQKS 352 (434)
T ss_pred ccchHHHHHHHhccCcHHHH-HHHHH---HH----------HHHhcCcEEEccCccccCcchhhcccccchHHHHHHhhC
Confidence 999999999999974 5554 33222 32 33556664444443 3567778899999999999999
Q ss_pred cEEEEecCCCcc----------cccccc----cccccchhhhhccCHHHHH
Q 042742 780 DLIILEGMGRAL----------HTNFNA----RFKCEALKLAMVKNQRLAE 816 (834)
Q Consensus 780 DLVI~KGmgn~i----------htN~ea----~~~~~~l~L~~vKc~~vA~ 816 (834)
+|||+||+.||- -|-|+. .-.+++.-|-.||++.++-
T Consensus 353 ~LvIFKGDLNYRKL~GD~~W~~Tt~F~t~Lrgf~p~n~caLRTiKadvv~G 403 (434)
T KOG3870|consen 353 SLVIFKGDLNYRKLTGDRKWDPTTPFSTALRGFAPSNICALRTIKADVVVG 403 (434)
T ss_pred cEEEEeccccHHHHhccCCCCCCCcHHHHhCCCCCCccceeeeeeeeeeec
Confidence 999999999871 122322 2246788899999987653
No 13
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=99.90 E-value=6.6e-23 Score=227.46 Aligned_cols=250 Identities=15% Similarity=0.170 Sum_probs=184.0
Q ss_pred CceEEEEeccceeEEEEEeecCCCccchhhhhhhhhhccccCCCCcCCCCCCCeEEEeEeecCCHHHHH-HHHHhccccc
Q 042742 40 ISHLALDIGGSLIKLVYFSRHEDQSIDDKRKKTIKERLGISNGNRRSYPILGGRLHFVKFETTKISECL-DFIHSKQLHR 118 (834)
Q Consensus 40 ~~~~giDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~~i~~~l-~fi~~~~~~~ 118 (834)
...+|||||+|+||+|+++ ... . .+.......++...+++++ +|+++.++..
T Consensus 144 g~~lGIDiGSTttK~Vl~d-d~~--I------------------------i~~~~~~t~~~~~~a~~~l~~~l~~~Gl~~ 196 (404)
T TIGR03286 144 GLTLGIDSGSTTTKAVVME-DNE--V------------------------IGTGWVPTTKVIESAEEAVERALEEAGVSL 196 (404)
T ss_pred CEEEEEEcChhheeeEEEc-CCe--E------------------------EEEEEeecccHHHHHHHHHHHHHHHcCCCc
Confidence 3579999999999999976 210 0 0000111224445566666 5666666533
Q ss_pred ---CcEEEeCCccccchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccEEEEEcCC
Q 042742 119 ---GGIHATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPYLLVNIGS 195 (834)
Q Consensus 119 ---~~i~~TGGGA~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGS 195 (834)
..+++||||.....+. ++.+ ..++|++||.+|+.||.+..| ....+++||+
T Consensus 197 ~di~~i~~TGyGR~~i~~~----~~ad-~iv~EItaha~GA~~L~p~~~---------------------~v~TIIDIGG 250 (404)
T TIGR03286 197 EDVEAIGTTGYGRFTIGEH----FGAD-LIQEELTVNSKGAVYLADKQE---------------------GPATVIDIGG 250 (404)
T ss_pred cceeEEEeeeecHHHHhhh----cCCC-ceEEEEhhHHHHHHHhcccCC---------------------CCcEEEEeCC
Confidence 3489999998755432 3232 137999999999999975321 1257888999
Q ss_pred ceE-EEEEcCC--CceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCCCCCCCCCCCccccccccccccccccc
Q 042742 196 GVS-MIKVDGD--GKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNRDHRHIGLSASTIASSFGKTISDKKE 272 (834)
Q Consensus 196 GvS-iikV~~~--~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~~dy~~~GL~~d~iASsFGK~~~~~~~ 272 (834)
..| +++++++ .+|.+.+-|+.|+|.|+..+..++|. +++|+.++|.+|+.. ..+.+..|+.|++....+..
T Consensus 251 QDsK~I~l~~G~v~dF~MNdkCAAGTGrFLE~~A~~Lgi-~ieEl~~lA~~~~~~-----pv~IsS~CtVFaeSevIsll 324 (404)
T TIGR03286 251 MDNKAISVWDGIPDNFTMGGICAGASGRFLEMTAKRLGV-DITELGKLALKGMPE-----KVRMNSYCIVFGIQDLVTAL 324 (404)
T ss_pred CceEEEEEcCCceeeEEEcCcccccCcHHHHHHHHHhCC-CHHHHHHHHHhCCCC-----CCCccCcccccccHhHHHHH
Confidence 998 7777543 57999999999999999999888884 699999999998521 16677788888886544444
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhH
Q 042742 273 LADYRPEDISLSLLRMISYNIGQISYLNALRFGLKR-IFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGA 351 (834)
Q Consensus 273 ~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~-I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GA 351 (834)
.++.++|||+++|.++|++++.. ..++..+++. |+|+|+...|..+.. .+...+ +.++++++|++|.||
T Consensus 325 ~~G~~~eDIaAGl~~SIa~rv~~---~l~~~~~i~~~VvftGGva~N~gvv~-ale~~L------g~~iivPe~pq~~GA 394 (404)
T TIGR03286 325 AEGASPEDVAAAACHSVAEQVYE---QQLQEIDVREPVILVGGTSLIEGLVK-ALGDLL------GIEVVVPEYSQYIGA 394 (404)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHH---HHhhcCCCCCcEEEECChhhhHHHHH-HHHHHh------CCcEEECCcccHHHH
Confidence 56899999999999999999985 2367888876 999999877776543 344333 688999999999999
Q ss_pred HHHHhcc
Q 042742 352 LGAFMSY 358 (834)
Q Consensus 352 lGA~L~~ 358 (834)
|||+|.+
T Consensus 395 iGAAL~A 401 (404)
T TIGR03286 395 VGAALLA 401 (404)
T ss_pred HHHHHHh
Confidence 9999975
No 14
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=99.84 E-value=7.5e-20 Score=196.64 Aligned_cols=237 Identities=18% Similarity=0.190 Sum_probs=173.3
Q ss_pred CceEEEEeccceeEEEEEeecCCCccchhhhhhhhhhccccCCCCcCCCCCCCeEEEeEeecC-----CHHHHHHHH-Hh
Q 042742 40 ISHLALDIGGSLIKLVYFSRHEDQSIDDKRKKTIKERLGISNGNRRSYPILGGRLHFVKFETT-----KISECLDFI-HS 113 (834)
Q Consensus 40 ~~~~giDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~-----~i~~~l~fi-~~ 113 (834)
+-.+|||||.|.+|+|-++. .. .+.+...++. ...++++-+ .+
T Consensus 32 m~~~GIDiGStt~K~Vlld~-~~------------------------------i~~~~~~~tg~~~~~~a~~~l~~~l~~ 80 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVCD-GE------------------------------LYGYNSMRTGNNSPDSAKNALQGIMDK 80 (293)
T ss_pred cEEEEEEeCchhEEEEEEeC-CE------------------------------EEEEEeecCCCCHHHHHHHHHHHHHHH
Confidence 45799999999999999872 10 1222233333 234444444 33
Q ss_pred cccc---cCcEEEeCCccc--cchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccE
Q 042742 114 KQLH---RGGIHATGGGAY--KFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPY 188 (834)
Q Consensus 114 ~~~~---~~~i~~TGGGA~--k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~Py 188 (834)
.++. ...+++||+|.. +|++ ..++|+.||.+|+.|+.+ .++.
T Consensus 81 ~g~~~~~v~~~~~TGyGr~~~~~a~----------~~v~EItaha~Ga~~~~p---p~v~-------------------- 127 (293)
T TIGR03192 81 IGMKLEDINYVVGTGYGRVNVPFAH----------KAITEIACHARGANYMGG---NAVR-------------------- 127 (293)
T ss_pred cCCcccceEEEEEECcchhhcchhh----------cceeeHHHHHHHHHHhcC---CCCC--------------------
Confidence 3432 233889999954 3332 358999999999999962 1233
Q ss_pred EEEEcCCceE-EEEEcCC---CceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCC--CCCCCCCCCCCccccccc
Q 042742 189 LLVNIGSGVS-MIKVDGD---GKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRG--DNRDHRHIGLSASTIASS 262 (834)
Q Consensus 189 LlVNIGSGvS-iikV~~~---~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~G--d~~dy~~~GL~~d~iASs 262 (834)
-++.||...| +|+++.+ .+|.+++.|+.|+|+|+.-+.-.+|. +.+|+-++|.+. ++ .+.+.+|+.
T Consensus 128 tIIDIGGQDsK~I~~d~~G~v~dF~MNdkCAAGTGrFLE~~A~~Lgi-~leel~~~a~~~~~~p-------~~Iss~CtV 199 (293)
T TIGR03192 128 TILDMGGQDCKAIHCDEKGKVTNFLMNDKCAAGTGRGMEVISDLMQI-PIADLGPRSFDVETEP-------EAVSSICVV 199 (293)
T ss_pred EEEEeCCCceEEEEEcCCCcEeeeeecCcccccccHHHHHHHHHcCC-CHHHHHHHHHhcCCCC-------CCcCCcceE
Confidence 3455999999 8888533 47999999999999999999999995 599998888443 44 777889999
Q ss_pred ccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecccccCcchhHHHHHHHHhhccCCCceEe
Q 042742 263 FGKTISDKKELADYRPEDISLSLLRMISYNIGQISYLNALRFGLK-RIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAM 341 (834)
Q Consensus 263 FGK~~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~-~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~ 341 (834)
|.+....+...+++++|||+++|.++|++++..+ +++.+++ +|+|+|+..+|..+.- .++..+ +.++.
T Consensus 200 FAeSevi~l~~~G~~~edI~aGl~~sia~rv~~~----~~~~~i~~~v~~~GGva~N~~l~~-al~~~L------g~~v~ 268 (293)
T TIGR03192 200 FAKSEALGLLKAGYTKNMVIAAYCQAMAERVVSL----LERIGVEEGFFITGGIAKNPGVVK-RIERIL------GIKAV 268 (293)
T ss_pred eccHhHHHHHHCCCCHHHHHHHHHHHHHHHHHHH----hcccCCCCCEEEECcccccHHHHH-HHHHHh------CCCce
Confidence 9987666666679999999999999999998666 3355775 5999999999987654 344433 45555
Q ss_pred -eccCCchhhHHHHHhccc
Q 042742 342 -FLRHEGFLGALGAFMSYE 359 (834)
Q Consensus 342 -Fl~h~gy~GAlGA~L~~~ 359 (834)
.+.|++|.|||||+|.+.
T Consensus 269 ~~p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 269 DTKIDSQIAGALGAALFGY 287 (293)
T ss_pred eCCCCccHHHHHHHHHHHH
Confidence 477899999999999874
No 15
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=99.81 E-value=8.1e-19 Score=186.37 Aligned_cols=242 Identities=21% Similarity=0.187 Sum_probs=170.9
Q ss_pred eEEEEeccceeEEEEEeecCCCccchhhhhhhhhhccccCCCCcCCCCCCCeEEEeEeec--CC----HHHHHHHHH-hc
Q 042742 42 HLALDIGGSLIKLVYFSRHEDQSIDDKRKKTIKERLGISNGNRRSYPILGGRLHFVKFET--TK----ISECLDFIH-SK 114 (834)
Q Consensus 42 ~~giDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t--~~----i~~~l~fi~-~~ 114 (834)
.+|||||.|.+|.|-++.... + .-.+.+...++ .+ .+++++-+. +.
T Consensus 3 ~~GIDiGStttK~Vlid~~~~-------~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 55 (262)
T TIGR02261 3 TAGIDIGTGAIKTVLFEVDGD-------K--------------------EECLAKRNDRIRQRDPFKLAEDAYDDLLEEA 55 (262)
T ss_pred EEEEEcCcccEEEEEEecCCC-------e--------------------eEEEEEEEecCCCCCHHHHHHHHHHHHHHHc
Confidence 589999999999999873210 0 00122222222 12 355555553 33
Q ss_pred cc---ccCcEEEeCCccc-cchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccEEE
Q 042742 115 QL---HRGGIHATGGGAY-KFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPYLL 190 (834)
Q Consensus 115 ~~---~~~~i~~TGGGA~-k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~PyLl 190 (834)
++ ....+++||||.. .|++ ..+.|++||.+|+.|+.+. +- -+
T Consensus 56 g~~~~~i~~i~~TGYGR~~~~a~----------~~vtEIt~ha~GA~~~~p~----~~--------------------tI 101 (262)
T TIGR02261 56 GLAAADVAYCATTGEGESLAFHT----------GHFYSMTTHARGAIYLNPE----AR--------------------AV 101 (262)
T ss_pred CCChhheEEEEEECCchhhhhhc----------CCeeEEeHHHHHHHHHCCC----CC--------------------EE
Confidence 44 2334899999954 2322 2478999999999999752 22 34
Q ss_pred EEcCCceE-EEEEcCC---CceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCCCCCCCCCCCccccccccccc
Q 042742 191 VNIGSGVS-MIKVDGD---GKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNRDHRHIGLSASTIASSFGKT 266 (834)
Q Consensus 191 VNIGSGvS-iikV~~~---~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~~dy~~~GL~~d~iASsFGK~ 266 (834)
+.||.+.+ +++++.+ .+|.+++.|+.|+|+|+..+...+|. +.+|+-++|.+.++ ..+.+.+|+.|.+.
T Consensus 102 iDIGGQD~K~I~~~~~G~v~~f~MNdkCAAGTG~FLe~~A~~L~i-~leel~~~a~~~~~------~~~iss~CtVFaeS 174 (262)
T TIGR02261 102 LDIGALHGRAIRMDERGKVEAYKMTSQCASGSGQFLENIARYLGI-AQDEIGSLSQQADN------PEKVSGICAVLAET 174 (262)
T ss_pred EEeCCCceEEEEEcCCCcEeeEEecCcccccccHHHHHHHHHhCC-CHHHHHHHHhcCCC------CCCcCCCceEEchh
Confidence 55888888 7888532 57999999999999999999999996 59999999977754 26678888999987
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcC-CC-EEEEecccccCcchhHHHHHHHHhhccCCCceEeecc
Q 042742 267 ISDKKELADYRPEDISLSLLRMISYNIGQISYLNALRFG-LK-RIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLR 344 (834)
Q Consensus 267 ~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~-i~-~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~ 344 (834)
...+...+++++|||+++|.++|+.++..++ ++.+ .+ +|+|+|+..+|..+.- .+...+.= ....+.+..++
T Consensus 175 evi~~~~~G~~~edI~aGl~~sia~r~~~~~----~~~~~~~~~v~~~GGva~n~~~~~-~le~~l~~-~~~~~~v~~~~ 248 (262)
T TIGR02261 175 DVINMVSRGISAPNILKGIHESMADRLAKLL----KSLGALDGTVLCTGGLALDAGLLE-ALKDAIQE-AKMAVAAENHP 248 (262)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----hccCCCCCcEEEECcccccHHHHH-HHHHHhcc-CCcceEecCCC
Confidence 6555556789999999999999999997773 3443 34 6999999888887543 34333200 01123355678
Q ss_pred CCchhhHHHHHhc
Q 042742 345 HEGFLGALGAFMS 357 (834)
Q Consensus 345 h~gy~GAlGA~L~ 357 (834)
|++|.|||||+|.
T Consensus 249 ~~q~~gAlGAAl~ 261 (262)
T TIGR02261 249 DAIYAGAIGAALW 261 (262)
T ss_pred cchHHHHHHHHHc
Confidence 8999999999985
No 16
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=99.75 E-value=3.4e-17 Score=178.48 Aligned_cols=244 Identities=18% Similarity=0.249 Sum_probs=179.5
Q ss_pred CCceEEEEeccceeEEEEEeecCCCccchhhhhhhhhhccccCCCCcCCCCCCCeEEEeEeec--------CCHHHHHHH
Q 042742 39 DISHLALDIGGSLIKLVYFSRHEDQSIDDKRKKTIKERLGISNGNRRSYPILGGRLHFVKFET--------TKISECLDF 110 (834)
Q Consensus 39 ~~~~~giDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t--------~~i~~~l~f 110 (834)
....+|||.|.|.||.|-.+... .+....+.+ +-+.+.++.
T Consensus 134 ~~~~LGID~GSTtTK~VLm~d~~-------------------------------~I~~~~~~~t~g~p~~~~~l~~~le~ 182 (396)
T COG1924 134 GMYTLGIDSGSTTTKAVLMEDGK-------------------------------EILYGFYVSTKGRPIAEKALKEALEE 182 (396)
T ss_pred CcEEEEEecCCcceeEEEEeCCC-------------------------------eEEEEEEEcCCCChhHHHHHHHHHHH
Confidence 45689999999999999987321 111111111 223334444
Q ss_pred HHhcccccCcEEEeCCccccchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccEEE
Q 042742 111 IHSKQLHRGGIHATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPYLL 190 (834)
Q Consensus 111 i~~~~~~~~~i~~TGGGA~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~PyLl 190 (834)
+.........+.+||+|-+.... -++.. ..+.|+.||.+|+.|+.+.. + -+
T Consensus 183 l~~~~~~I~~~~~TGYGR~~v~~----~~~aD-~~~~Ei~ah~kgA~~f~p~~--------------------d----tI 233 (396)
T COG1924 183 LGEKLEEILGLGVTGYGRNLVGA----ALGAD-KVVVEISAHAKGARYFAPDV--------------------D----TV 233 (396)
T ss_pred cccChheeeeeeeecccHHHhhh----hhcCC-cceeeeehhHHHHHHhCCCC--------------------c----EE
Confidence 43332223459999999443221 11221 25899999999999998632 1 35
Q ss_pred EEcCCceE-EEEEcCC--CceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCCCCCCCCCCCcccccccccccc
Q 042742 191 VNIGSGVS-MIKVDGD--GKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNRDHRHIGLSASTIASSFGKTI 267 (834)
Q Consensus 191 VNIGSGvS-iikV~~~--~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~~dy~~~GL~~d~iASsFGK~~ 267 (834)
+.||...+ .++++++ .+|.+.+-|+.|.|.|+...+.-+|. +.+|+-++|.++++ ..+.+..|..|+...
T Consensus 234 iDIGGQD~K~i~i~dG~v~df~mN~~CAAGtGrFLE~~A~~Lgv-~v~E~~~~A~~~~~------~v~i~S~CaVF~eSe 306 (396)
T COG1924 234 IDIGGQDSKVIKLEDGKVDDFTMNDKCAAGTGRFLEVIARRLGV-DVEELGKLALKATP------PVKINSRCAVFAESE 306 (396)
T ss_pred EEecCcceeEEEEeCCeeeeeEeccccccccchHHHHHHHHhCC-CHHHHHHHHhcCCC------CcccCCeeEEEehHH
Confidence 55999999 7888753 78999999999999999999999995 59999999999987 245567788888765
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHH-HHHHHHHHcCCCE-EEEecccccCcchhHHHHHHHHhhccCCCceEeeccC
Q 042742 268 SDKKELADYRPEDISLSLLRMISYNIGQ-ISYLNALRFGLKR-IFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRH 345 (834)
Q Consensus 268 ~~~~~~~~~~~eDia~SLl~mI~~nIgq-lA~l~A~~~~i~~-I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h 345 (834)
..+...++.++|||+++|.++|.+|+.. + .+.-+++. |||.|+...|..+.- .++.- -+++++.++|
T Consensus 307 vi~~~~~G~~~EdI~AGl~~Sv~~~v~~~~----~~~~~i~~~iv~~GGva~n~av~~-ale~~------lg~~V~vP~~ 375 (396)
T COG1924 307 VISALAEGASPEDILAGLAYSVAENVAEKV----IKRVDIEEPIVLQGGVALNKAVVR-ALEDL------LGRKVIVPPY 375 (396)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHH----hhccCCCCCEEEECcchhhHHHHH-HHHHH------hCCeeecCCc
Confidence 5555567899999999999999999987 5 56778877 999998888876543 23332 3689999999
Q ss_pred CchhhHHHHHhcccc
Q 042742 346 EGFLGALGAFMSYEK 360 (834)
Q Consensus 346 ~gy~GAlGA~L~~~~ 360 (834)
+++.||+||+|.+.+
T Consensus 376 ~ql~GAiGAAL~a~~ 390 (396)
T COG1924 376 AQLMGAIGAALIAKE 390 (396)
T ss_pred cchhhHHHHHHHHhh
Confidence 999999999998753
No 17
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.73 E-value=2.7e-16 Score=166.70 Aligned_cols=187 Identities=22% Similarity=0.290 Sum_probs=146.8
Q ss_pred cEEEeCCccccchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccEEEEEcCCceE-
Q 042742 120 GIHATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPYLLVNIGSGVS- 198 (834)
Q Consensus 120 ~i~~TGGGA~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvS- 198 (834)
.|.+||.|..-... . + ..++|+.|+.+|+.|+.+.. =.+++||.+.+
T Consensus 57 ~i~~Tg~~~~~v~~--~---~---~~~~ei~~~~~g~~~~~~~~------------------------~~vidiGgqd~k 104 (248)
T TIGR00241 57 KIVATGYGRHKVGF--A---D---KIVTEISCHGKGANYLAPEA------------------------RGVIDIGGQDSK 104 (248)
T ss_pred EEEEECCCcccccc--c---C---CceEEhhHHHHHHHHHCCCC------------------------CEEEEecCCeeE
Confidence 48999999442221 0 1 36899999999999997521 13788988777
Q ss_pred EEEEcCC--CceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCCCCCCCCCCCcccccccccccccccccccCC
Q 042742 199 MIKVDGD--GKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNRDHRHIGLSASTIASSFGKTISDKKELADY 276 (834)
Q Consensus 199 iikV~~~--~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~~dy~~~GL~~d~iASsFGK~~~~~~~~~~~ 276 (834)
++.++++ .+|.+.+-|+.|+|.|+.-..-..| -+++|+-+++.++.. ..+.+.+|+.|.+....+...++.
T Consensus 105 ~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~-~~~~e~~~~~~~~~~------~~~~~~~c~vf~~s~vi~~l~~g~ 177 (248)
T TIGR00241 105 VIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRLG-VSVEELGSLAEKADR------KAKISSMCTVFAESELISLLAAGV 177 (248)
T ss_pred EEEECCCcEeeeeecCcccccccHHHHHHHHHcC-CCHHHHHHHHhcCCC------CCCcCCEeEEEechhHHHHHHCCC
Confidence 7778743 3566999999999999999998889 469999999988764 256678899999865544444578
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHHHHH
Q 042742 277 RPEDISLSLLRMISYNIGQISYLNALRFGLK-RIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAF 355 (834)
Q Consensus 277 ~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~-~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAlGA~ 355 (834)
+++|++++++.+++++|..++ +..+++ +|+++|+..+|+.+.. .++..+ +.+++.++|++|.||+||+
T Consensus 178 ~~~di~~~~~~~va~~i~~~~----~~~~~~~~Vvl~GGva~n~~l~~-~l~~~l------g~~v~~~~~~~~~~AlGaA 246 (248)
T TIGR00241 178 KKEDILAGVYESIAERVAEML----QRLKIEAPIVFTGGVSKNKGLVK-ALEKKL------GMKVITPPEPQIVGAVGAA 246 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHH----hhcCCCCCEEEECccccCHHHHH-HHHHHh------CCcEEcCCCccHHHHHHHH
Confidence 999999999999999999864 456777 8999999998877543 455444 6788999999999999998
Q ss_pred h
Q 042742 356 M 356 (834)
Q Consensus 356 L 356 (834)
|
T Consensus 247 l 247 (248)
T TIGR00241 247 L 247 (248)
T ss_pred h
Confidence 7
No 18
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=99.71 E-value=1.3e-16 Score=175.90 Aligned_cols=192 Identities=21% Similarity=0.225 Sum_probs=150.8
Q ss_pred cEEEeCCccc--cc-hhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccEEEEEcCCc
Q 042742 120 GIHATGGGAY--KF-ADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPYLLVNIGSG 196 (834)
Q Consensus 120 ~i~~TGGGA~--k~-~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSG 196 (834)
.+++||||.. .| .+ ..++|++||.+|+.|+.+. +- -++.||..
T Consensus 232 ~ivaTGYGR~~i~f~ad----------~vitEItcHA~GA~~l~P~----vr--------------------TIIDIGGQ 277 (432)
T TIGR02259 232 YLVGTGYGRVRLPFPKE----------HIRSEILCHGLGAHLMYPG----TR--------------------TVLDIGGQ 277 (432)
T ss_pred EEEEECccccccccccc----------ceeeeHHHHHHHHHHHCCC----CC--------------------EEEEeCCC
Confidence 3889999954 33 22 2359999999999999763 22 35559999
Q ss_pred eE-EEEEcCC---CceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCCCCCCCCCCCccccccccccccccccc
Q 042742 197 VS-MIKVDGD---GKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNRDHRHIGLSASTIASSFGKTISDKKE 272 (834)
Q Consensus 197 vS-iikV~~~---~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~~dy~~~GL~~d~iASsFGK~~~~~~~ 272 (834)
.| +|+++.+ .+|.+++.|+.|+|.|+..+.-.+|. +.+|+-++|.++++ ..+.+.+|+.|.+....+..
T Consensus 278 DsK~I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~Lgi-~leEl~~lA~~a~~------pv~ISS~CtVFAESEVIsll 350 (432)
T TIGR02259 278 DTKGIQIDDHGIVENFQMNDRCAAGCGRYLGYIADEMNM-GLHELGPLAMKSSK------PARINSTCTVFAGAELRDRL 350 (432)
T ss_pred ceEEEEEcCCCcEeeeeecCcccccchHHHHHHHHHcCC-CHHHHHHHHhcCCC------CCCcCCcceEEehHHHHHHH
Confidence 99 8888743 47999999999999999999999996 59999999987765 37778899999987666666
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhH
Q 042742 273 LADYRPEDISLSLLRMISYNIGQISYLNALRFGL-KRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGA 351 (834)
Q Consensus 273 ~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i-~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GA 351 (834)
.++++++||+++|.++|+.|+.+++. +..++ +.|+|+|+..+|..+.- .++..+.= ..++.+++.++|++|.||
T Consensus 351 a~G~~reDIaAGL~~SIA~Rv~s~l~---r~~~i~~~VvftGGvA~N~gvv~-aLe~~L~~-~~~~~~V~Vp~~pq~~GA 425 (432)
T TIGR02259 351 ALGDKREDILAGLHRAIILRAISIIS---RSGGITDQFTFTGGVAKNEAAVK-ELRKLIKE-NYGEVQINIDPDSIYTGA 425 (432)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHh---cccCCCCCEEEECCccccHHHHH-HHHHHHcc-ccCCCeEecCCCccHHHH
Confidence 67999999999999999999988832 33255 46999999999987654 34433310 013567889999999999
Q ss_pred HHHHhc
Q 042742 352 LGAFMS 357 (834)
Q Consensus 352 lGA~L~ 357 (834)
|||+|.
T Consensus 426 LGAAL~ 431 (432)
T TIGR02259 426 LGASEF 431 (432)
T ss_pred HHHHHh
Confidence 999985
No 19
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=98.29 E-value=2.3e-06 Score=91.88 Aligned_cols=197 Identities=16% Similarity=0.191 Sum_probs=117.1
Q ss_pred EEEeCCccccchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccEEEEEcCCceEEE
Q 042742 121 IHATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPYLLVNIGSGVSMI 200 (834)
Q Consensus 121 i~~TGGGA~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSii 200 (834)
+.++|.|.......+.+..- ..|+.++..+...|... .. .|-+++-.|+|.-++
T Consensus 67 ~g~aG~~~~~~~~~~~~~~~-----~~~v~~~~Da~~al~~~--------------------~~-~~giv~I~GTGS~~~ 120 (271)
T PF01869_consen 67 IGAAGYGRAGDEQEFQEEIV-----RSEVIVVNDAAIALYGA--------------------TA-EDGIVVIAGTGSIAY 120 (271)
T ss_dssp EEEEEEEETTTTTHHHHHHH-----HHEEEEEEHHHHHHHHH--------------------ST-SSEEEEEESSSEEEE
T ss_pred eeEeeecCcccccchhhcce-----EEEEEEEHHHHHHhCCC--------------------CC-CcEEEEEcCCCceEE
Confidence 56788886544433332210 11555555555555541 23 478999999999999
Q ss_pred EEcCCCceEEecccc---cCchhHHHHHHhhcCCCCHHHHHHHhcCCCCCCCCCCCCCcccccccccccccccccccCCC
Q 042742 201 KVDGDGKFERVSGTN---VGGGTYWGLGRLLTKCKSFDELLELSQRGDNRDHRHIGLSASTIASSFGKTISDKKELADYR 277 (834)
Q Consensus 201 kV~~~~~f~RvgGts---iGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~~dy~~~GL~~d~iASsFGK~~~~~~~~~~~~ 277 (834)
..+.+++..|+||-+ =+.|.+..+.+..+... ++++..++.+.. |.. -....-+++|.++....-. .
T Consensus 121 ~~~~~g~~~r~gG~G~~~gD~GSg~~ig~~~L~~~-~~~~d~~~~~~~---~~~--~~~~~~~A~fa~~v~~~a~----~ 190 (271)
T PF01869_consen 121 GRDRDGRVIRFGGWGHCLGDEGSGYWIGRRALRAV-LRELDGRAEPTP---YAK--PASNARIAVFAPTVFEAAQ----Q 190 (271)
T ss_dssp EEETTSEEEEEEESCTTTTTTTSHHHHHHHHHHHH-HHHHTTSSTTSH---HHH--TT-HHHHHCTHHHHHHHHH----T
T ss_pred EEEcCCcEEEeCCCCCCcCCCCcHHHHHHHHHhHH-HHHhcCccccCc---ccC--CCChhheehhhHHHHHHHH----c
Confidence 998778999998853 55677777777665522 444332222211 222 2233445777776533211 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCCCE--EEEecccccCcchhHHHHHHHHhhccCC--CceEeeccCCchhhHHH
Q 042742 278 PEDISLSLLRMISYNIGQISYLNALRFGLKR--IFFGGFFIRGHAYTMDTISFAVQFWSKG--EAQAMFLRHEGFLGALG 353 (834)
Q Consensus 278 ~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~--I~f~G~fi~~~~~~m~~ls~ai~fws~g--~~~a~Fl~h~gy~GAlG 353 (834)
....|..++...++-+.+......++.+... |+++|+.+.+.++.-. +. +++.+. .....-++++.|.+|+|
T Consensus 191 gd~~a~~Il~~a~~~la~~i~~~~~~~~~~~~~v~l~GGv~~~~~~~~~-l~---~~l~~~~~~~~~~~~~~~~~~~a~G 266 (271)
T PF01869_consen 191 GDEVARDILAEAADELAELIKAVLKRLGPEKEPVVLSGGVFKNSPLVKA-LR---DALKEKLPKVPIIIPVEPQYDPAYG 266 (271)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTCTCCCCSEEEESGGGGCHHHHHH-HG---GGS-HHHHCCTCECECCGSSHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCccCchHHHHH-HH---HHHHHhcCCCceEECCCCCccHHHH
Confidence 3445556666666666666666677777754 9999999998775432 21 111111 22345678999999999
Q ss_pred HHhc
Q 042742 354 AFMS 357 (834)
Q Consensus 354 A~L~ 357 (834)
|+|.
T Consensus 267 Aall 270 (271)
T PF01869_consen 267 AALL 270 (271)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9984
No 20
>PRK14878 UGMP family protein; Provisional
Probab=97.89 E-value=0.00051 Score=76.32 Aligned_cols=207 Identities=13% Similarity=0.113 Sum_probs=139.4
Q ss_pred cEEEeCC-c-------cccchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccEEEE
Q 042742 120 GIHATGG-G-------AYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPYLLV 191 (834)
Q Consensus 120 ~i~~TGG-G-------A~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~PyLlV 191 (834)
.|.+|-| | ...++.-+...+++++.-++-.+||+..+.|-. .-.+|.+|+
T Consensus 68 ~Iavt~gPG~~~~lrvg~~~Ak~la~~~~~p~~~v~h~~~Ha~sa~~~s----------------------~~~~~l~l~ 125 (323)
T PRK14878 68 AVAVSQGPGLGPALRVGATAARALALKYNKPLVPVNHCIAHIEIGRLTT----------------------GAKDPVVLY 125 (323)
T ss_pred EEEEecCCCcccchHHHHHHHHHHHHHhCCCccccchHHHHHHhhhhcC----------------------CCCCCEEEE
Confidence 3777753 2 233466677788999999999999998765431 112566666
Q ss_pred EcCCceEEEEEcCCCceEEeccc-ccCchhHHHHHHhhcCCCCH--HHHHHHhcCCCCC-CCCCCCCCcccccccccccc
Q 042742 192 NIGSGVSMIKVDGDGKFERVSGT-NVGGGTYWGLGRLLTKCKSF--DELLELSQRGDNR-DHRHIGLSASTIASSFGKTI 267 (834)
Q Consensus 192 NIGSGvSiikV~~~~~f~RvgGt-siGGGTf~GL~~LLtg~~~f--deil~LA~~Gd~~-dy~~~GL~~d~iASsFGK~~ 267 (834)
--|.=+++++++ +++|+.+++| -.+-|.++--+..++|.... ..+-++|.+++.. .|+ .+.+...-+|-.+.
T Consensus 126 vsGg~t~i~~~~-~~~~~~~~~t~d~s~Gr~fD~vA~~LGl~~~G~~~lE~~a~~~~~~~~~p---~~~~~~~~~fsgl~ 201 (323)
T PRK14878 126 VSGGNTQVLAFR-GGRYRVFGETLDIAIGNALDTFAREVGLAPPGGPAIEKCAEKGEKYIELP---YVVKGQDLSFSGLL 201 (323)
T ss_pred EEcCCeEEEEEe-CCeEEEeeeecCcchhHHHHHHHHHcCCCCCChhHHHHHHhhCCCcCcCC---ccCcCCCCcchHHH
Confidence 566556688887 4789999997 58889998888888775411 1244556666541 231 11111233443111
Q ss_pred cc--cccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccC
Q 042742 268 SD--KKELADYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRH 345 (834)
Q Consensus 268 ~~--~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h 345 (834)
.. ....++.+++|||+++...+.+.+..++..+++.+++++|+++|+...|..+...+..... +.++++++.+
T Consensus 202 ~~v~~~i~~~~~~~diAa~fq~~l~~~l~~~~~~~~~~~g~~~vvlsGGVa~N~~L~~~l~~~~~----~~g~~v~~~~- 276 (323)
T PRK14878 202 TAALRLYKGKERLEDVCYSLRETAFAMLVEVTERALAHTGKKEVLLVGGVAANRRLREKLEIMAE----DRGAKFYVVP- 276 (323)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHHHH----HCCCEEECCC-
Confidence 10 1011235679999999999999999999999999999999999999999987765444322 3456666655
Q ss_pred CchhhHHHHHhc
Q 042742 346 EGFLGALGAFMS 357 (834)
Q Consensus 346 ~gy~GAlGA~L~ 357 (834)
..|.|--|+++.
T Consensus 277 ~~~~~D~GimIA 288 (323)
T PRK14878 277 PEYAGDNGAMIA 288 (323)
T ss_pred CCCCchHHHHHH
Confidence 888888888774
No 21
>PRK09557 fructokinase; Reviewed
Probab=97.89 E-value=0.0023 Score=69.84 Aligned_cols=78 Identities=14% Similarity=0.050 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHh---hccCCCceEeeccCCchhhHHHHHhc
Q 042742 281 ISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQ---FWSKGEAQAMFLRHEGFLGALGAFMS 357 (834)
Q Consensus 281 ia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~---fws~g~~~a~Fl~h~gy~GAlGA~L~ 357 (834)
.|+.++.-.+..+++.........+.+.||++|.+..... -+..+...++ +......++..-......+++||+..
T Consensus 220 ~a~~~l~~~~~~La~~l~~l~~~ldP~~IvlgG~~~~~~~-~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~ 298 (301)
T PRK09557 220 VAELAFRRYEDRLAKSLAHVINILDPDVIVLGGGMSNVDR-LYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWL 298 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCcccchHH-HHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHh
Confidence 5677888888888887777788899999999998877543 3434444443 12222556777788899999999886
Q ss_pred cc
Q 042742 358 YE 359 (834)
Q Consensus 358 ~~ 359 (834)
+.
T Consensus 299 ~~ 300 (301)
T PRK09557 299 WP 300 (301)
T ss_pred hc
Confidence 53
No 22
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=97.87 E-value=0.026 Score=68.44 Aligned_cols=77 Identities=22% Similarity=0.324 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEecccccCc-chhHHHHHHHHhhccCCCce------EeeccCCchhh
Q 042742 279 EDISLSLLRMISYNIGQISYLNALRFG-LKRIFFGGFFIRGH-AYTMDTISFAVQFWSKGEAQ------AMFLRHEGFLG 350 (834)
Q Consensus 279 eDia~SLl~mI~~nIgqlA~l~A~~~~-i~~I~f~G~fi~~~-~~~m~~ls~ai~fws~g~~~------a~Fl~h~gy~G 350 (834)
+.+|..++...+..+|+.+...+..++ ...||++|+..... ++-.. -.+.-.|-.+|.++ ++++-...+.|
T Consensus 242 d~~A~~~~~~~~~~lg~~~~nl~~~~~~p~~vvigGGIs~~~~~~l~~-~~f~~~f~~kg~~~~~~~~ipv~~i~~~~~~ 320 (638)
T PRK14101 242 DALALEAVECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTR-SSFRARFEAKGRFEAYLANIPTYLITAEYPA 320 (638)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCcHHHHHHHHcCh-HHHHHHHHhCCChHHHHhcCCEEEEeCCChh
Confidence 356788999999999999999999998 78899999886542 22111 01222344455432 34566667777
Q ss_pred HHHHHh
Q 042742 351 ALGAFM 356 (834)
Q Consensus 351 AlGA~L 356 (834)
=+||+-
T Consensus 321 l~Gaa~ 326 (638)
T PRK14101 321 FLGVSA 326 (638)
T ss_pred HHHHHH
Confidence 777744
No 23
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=97.75 E-value=0.0052 Score=67.36 Aligned_cols=80 Identities=18% Similarity=0.138 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhc----cCCCceEeeccCCchhhHHHHH
Q 042742 280 DISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFW----SKGEAQAMFLRHEGFLGALGAF 355 (834)
Q Consensus 280 Dia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fw----s~g~~~a~Fl~h~gy~GAlGA~ 355 (834)
..|..++.-.+..+|+.........+.+.|+++|.+....+.-+..+...++=+ .....+...-.++...+++||+
T Consensus 226 ~~a~~i~~~~~~~L~~~i~~~~~~~dP~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa 305 (318)
T TIGR00744 226 PVAVDSYREVARWAGAGLADLASLFNPSAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAA 305 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHH
Confidence 457788888888888887777778899999999998877665555555554421 1234567788889999999999
Q ss_pred hccc
Q 042742 356 MSYE 359 (834)
Q Consensus 356 L~~~ 359 (834)
....
T Consensus 306 ~~~~ 309 (318)
T TIGR00744 306 DLAR 309 (318)
T ss_pred HHHH
Confidence 7653
No 24
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=97.62 E-value=0.0012 Score=72.71 Aligned_cols=190 Identities=16% Similarity=0.136 Sum_probs=127.4
Q ss_pred ccchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccEEEEEcCCceE-EEEEcCCCc
Q 042742 129 YKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPYLLVNIGSGVS-MIKVDGDGK 207 (834)
Q Consensus 129 ~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvS-iikV~~~~~ 207 (834)
.-++.-+...+++++.-++.++||+.-+.|..+ ...+|++++-|=.|.+ ++.+++.++
T Consensus 89 ~~~Ak~la~~~~~p~~~v~hl~~ha~~a~~~s~---------------------~~~~~~l~l~vsGG~t~l~~~~~~~~ 147 (305)
T TIGR00329 89 ATFARSLALSLDKPLIGVNHLLGHIYAPRLDTN---------------------ILQFPFVSLLVSGGHTQIIAVKGIGD 147 (305)
T ss_pred HHHHHHHHHHhCCCEeecccHHHHHHHhhhhcC---------------------CCCCCcEEEEEcCCceEEEEEeCCCc
Confidence 345666777889999999999999987776532 1247888776644666 667777679
Q ss_pred eEEeccc-ccCchhHHHHHHhhcCCCCHHH--HHHHhcCCCCCCCCCCCCCc--c-cccccccccccc-----cc---cc
Q 042742 208 FERVSGT-NVGGGTYWGLGRLLTKCKSFDE--LLELSQRGDNRDHRHIGLSA--S-TIASSFGKTISD-----KK---EL 273 (834)
Q Consensus 208 f~RvgGt-siGGGTf~GL~~LLtg~~~fde--il~LA~~Gd~~dy~~~GL~~--d-~iASsFGK~~~~-----~~---~~ 273 (834)
|++++.| -..-|.++--+..++|..-..| |..+|..|+...|. +.+|- . ..--||-.+... .+ ..
T Consensus 148 ~~~l~~t~d~S~GrlfD~va~lLGl~y~g~~~iE~lA~~~~~~~~~-~~~~~~~~~~~~~s~sgl~~~~~~~~~~~~~~~ 226 (305)
T TIGR00329 148 YEVLGETLDDAVGEAFDKVARLLGLGYPGGPKIEELAKKGDKLPFY-FPLPYTVKPMLDFSFSGLKTAALRKIEKLKKNL 226 (305)
T ss_pred EEEeeeecCchhhHHHHHHHHHcCCCCCChHHHHHHHhhCCCcccc-CCCccccCCCCcEEchHHHHHHHHHHHhccccc
Confidence 9999987 3677777777777777542233 67788888763333 22221 0 001222111100 00 00
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeecc
Q 042742 274 ADYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLR 344 (834)
Q Consensus 274 ~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~ 344 (834)
...+++|||+++...+.+.+..++..+.+.+++++|+++|+...|..+...+....- +.++++++.+
T Consensus 227 ~~~~~~~iAasfq~~l~~~l~~~~~~~~~~~g~~~vvlsGGVa~N~~L~~~l~~~~~----~~g~~v~~~~ 293 (305)
T TIGR00329 227 NEATKEDIAYSFQETAFDHLIEKTKRALKDTGPKELVLVGGVSANKRLREMLETLCQ----ELNVEFYYPP 293 (305)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHHHHH----HCCCEEECCC
Confidence 114579999999999999999999999999999999999999999988766544321 2345665543
No 25
>PRK12408 glucokinase; Provisional
Probab=97.57 E-value=0.0027 Score=70.92 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEecccccC-cchhHHH--HHHHHh-h-c--cCCCceEeeccCCchhh
Q 042742 279 EDISLSLLRMISYNIGQISYLNALRFGLKR-IFFGGFFIRG-HAYTMDT--ISFAVQ-F-W--SKGEAQAMFLRHEGFLG 350 (834)
Q Consensus 279 eDia~SLl~mI~~nIgqlA~l~A~~~~i~~-I~f~G~fi~~-~~~~m~~--ls~ai~-f-w--s~g~~~a~Fl~h~gy~G 350 (834)
..+|+.++...+..+++...-.+...+... ||++|+.... ..+-+.. +...++ + | ....+.+...+++ .+|
T Consensus 245 D~~A~~~~~~~~~~La~~i~nl~~~ldPe~GIvIGGGIs~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~I~~~~~~-~ag 323 (336)
T PRK12408 245 DALAHEALQVFCGFLGSVVGDMALAYGARGGVYLAGGILPQIADFLARSDFVERFLNKGPMRPALEQVPVKLVEHG-QLG 323 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEECchhHhHHhhhcCHHHHHHHhccCchhhHhcCCCEEEEeCC-ChH
Confidence 457888999999999999999999999998 9999998754 3332221 211111 1 1 1224567777887 799
Q ss_pred HHHHHhc
Q 042742 351 ALGAFMS 357 (834)
Q Consensus 351 AlGA~L~ 357 (834)
.+||+..
T Consensus 324 l~GAa~~ 330 (336)
T PRK12408 324 VLGAASW 330 (336)
T ss_pred HHHHHHH
Confidence 9999743
No 26
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=97.46 E-value=0.018 Score=63.11 Aligned_cols=191 Identities=13% Similarity=0.061 Sum_probs=104.9
Q ss_pred ccchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccEEEEEcCCceEE-EEEcCCCc
Q 042742 129 YKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPYLLVNIGSGVSM-IKVDGDGK 207 (834)
Q Consensus 129 ~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSi-ikV~~~~~ 207 (834)
..+++.|++.+++++...++..|.+.|-.++-.. ...-.++.+.+|+|+-- +-+++ +
T Consensus 96 ~~l~~~L~~~~~~Pv~veNDan~aalaE~~~g~~--------------------~~~~~~~~i~~gtGIG~giv~~g--~ 153 (314)
T COG1940 96 VDLAEELEARLGLPVFVENDANAAALAEAWFGAG--------------------RGIDDVVYITLGTGIGGGIIVNG--K 153 (314)
T ss_pred ccHHHHHHHHHCCCEEEecHHHHHHHHHHHhCCC--------------------CCCCCEEEEEEccceeEEEEECC--E
Confidence 4478889999999999999999999997766421 12224888889999885 33333 2
Q ss_pred eEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCCCCCCCCCCCccccccccccccc-------------cccccc
Q 042742 208 FERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNRDHRHIGLSASTIASSFGKTIS-------------DKKELA 274 (834)
Q Consensus 208 f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~~dy~~~GL~~d~iASsFGK~~~-------------~~~~~~ 274 (834)
.. -|.....|- +|.+..- .... ...|+.+. -++.||..+-... .....+
T Consensus 154 l~-~G~~g~age--~Gh~~v~--~~g~------c~cG~~Gc-------lE~~as~~al~~~~~~~~~~~~~~~~~~~i~~ 215 (314)
T COG1940 154 LL-RGANGNAGE--IGHMVVD--PDGE------CGCGRRGC-------LETYASGRAILRRAAEALESEAGELTAKDIFE 215 (314)
T ss_pred Ee-ecCCCcccc--ccceEEC--CCCc------cCCCCCCc-------hHHhccHHHHHHHHHhhccccccCcCHHHHHH
Confidence 22 222232222 4443332 1111 12222211 0111111111100 000000
Q ss_pred CC-ChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEec-ccccCcchhHHHHHHHHhhcc---CCCceEeeccCC-ch
Q 042742 275 DY-RPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGG-FFIRGHAYTMDTISFAVQFWS---KGEAQAMFLRHE-GF 348 (834)
Q Consensus 275 ~~-~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G-~fi~~~~~~m~~ls~ai~fws---~g~~~a~Fl~h~-gy 348 (834)
.+ .....|+.++.-....+++.........+-..|+++| ........-...+...+.-+. ..........+. .-
T Consensus 216 ~a~~gd~~a~~~~~~~~~~la~~ianl~~~~~P~~IvigG~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (314)
T COG1940 216 LAAAGDPLAKEVIERAADYLARGLANLINLLDPEVIVIGGGGVSALGDLLLPRLRKLLAKYLFPPVLRPRIVEAALGGND 295 (314)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccchhHHHHHHHHHHHHhhcchhcccchhhhhccccc
Confidence 01 1223577788888888888888888899999999998 555443444444443333211 112333344445 78
Q ss_pred hhHHHHHhccc
Q 042742 349 LGALGAFMSYE 359 (834)
Q Consensus 349 ~GAlGA~L~~~ 359 (834)
+|++||++...
T Consensus 296 a~~~ga~~~~~ 306 (314)
T COG1940 296 AGLIGAALLAL 306 (314)
T ss_pred ccchhHHHHHH
Confidence 99999987653
No 27
>PRK09604 UGMP family protein; Validated
Probab=97.45 E-value=0.0031 Score=70.41 Aligned_cols=193 Identities=15% Similarity=0.160 Sum_probs=127.3
Q ss_pred cchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccEEEEEc-CCceE-EEEEcCCCc
Q 042742 130 KFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPYLLVNI-GSGVS-MIKVDGDGK 207 (834)
Q Consensus 130 k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~PyLlVNI-GSGvS-iikV~~~~~ 207 (834)
-++.-+...+++++.-++-++||+..+.+... .-+|++++-| | |.| ++.+.++++
T Consensus 93 ~~Ak~La~~~~ipl~~v~h~~~ha~~a~~~s~----------------------~~~~~lvl~vsG-G~s~~~~~~~~~~ 149 (332)
T PRK09604 93 SFAKALALALNKPLIGVNHLEGHLLAPFLEEE----------------------PEFPFLALLVSG-GHTQLVLVKGIGD 149 (332)
T ss_pred HHHHHHHHHhCCCEEeecCHHHHHHhhhhccC----------------------CCCCEEEEEecC-CccEEEEEcCCCc
Confidence 44566677788999999999999986665321 1246665554 4 555 566777789
Q ss_pred eEEeccc-ccCchhHHHHHHhhcCCCCHH--HHHHHhcCCCCCCCCC-CCCCcccccccccccccc-ccc--ccCCChhH
Q 042742 208 FERVSGT-NVGGGTYWGLGRLLTKCKSFD--ELLELSQRGDNRDHRH-IGLSASTIASSFGKTISD-KKE--LADYRPED 280 (834)
Q Consensus 208 f~RvgGt-siGGGTf~GL~~LLtg~~~fd--eil~LA~~Gd~~dy~~-~GL~~d~iASsFGK~~~~-~~~--~~~~~~eD 280 (834)
++.++.| ..+-|-|+.-+...+|-...+ ++..||..|+...|.- ..+..+-..-||-...+. .+. ..+.+++|
T Consensus 150 ~~~l~~t~d~slG~~yd~~t~~LG~~~~~g~kvmgLA~~g~~~~~~~~~~~~~~~~~~sfsg~~~~~~~~~~~~~~~~~~ 229 (332)
T PRK09604 150 YELLGETLDDAAGEAFDKVAKLLGLGYPGGPAIDKLAKQGDPDAFKFPRPMDRPGLDFSFSGLKTAVLNTIEKSEQTKAD 229 (332)
T ss_pred EEEccccCCchhhHHHHHHHHHcCCCCCCcHHHHHHHHhCCCCeEeCCccccCCCccEecCcHHHHHHHHHHhcCCCHHH
Confidence 9999987 467788888888888865333 4999999998532210 001001122233211100 000 01345789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhh
Q 042742 281 ISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLG 350 (834)
Q Consensus 281 ia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~G 350 (834)
||+++...+.+-+..++..+.+.+++++|+++|+...|..+...+....- +.++++++.+ .-|.|
T Consensus 230 iA~s~q~~l~~~l~~~~~~~~~~~~~~~lvlsGGVa~N~~L~~~l~~~~~----~~g~~v~~~~-~~p~~ 294 (332)
T PRK09604 230 IAASFQAAVVDVLVIKTKRALKQTGVKTLVVAGGVAANSGLRERLAELAK----KRGIEVFIPP-LKLCT 294 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEcChHHHHHHHHHHHHHHHH----HCCCEEECCC-CCCCc
Confidence 99999999999999999999999999999999999999987765444332 3356555544 43443
No 28
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=97.41 E-value=0.006 Score=67.81 Aligned_cols=196 Identities=14% Similarity=0.111 Sum_probs=130.0
Q ss_pred chhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccEEEEEcCCceEEEEEcCCCceEE
Q 042742 131 FADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPYLLVNIGSGVSMIKVDGDGKFER 210 (834)
Q Consensus 131 ~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSiikV~~~~~f~R 210 (834)
++.-+...+++++.-++-++||+..+.|-.+ --+|.+|+--|.=+++.+++ +++|+.
T Consensus 88 ~ak~la~~~~~p~~~v~h~~aHa~sa~~~s~----------------------~~~~lvL~vsGg~t~l~~~~-~~~~~~ 144 (322)
T TIGR03722 88 AARALALKLNKPLVGVNHCVAHIEIGRLTTG----------------------AKDPVVLYVSGGNTQVIAYR-NGRYRV 144 (322)
T ss_pred HHHHHHHHhCCCeechhhHHHHHHhhhccCC----------------------CCCCeEEEEeCCceEEEEEe-CCeEEE
Confidence 4566677789999999999999987665321 12565555556555688887 478999
Q ss_pred eccc-ccCchhHHHHHHhhcCCCCH--HHHHHHhcCCCCC-CCCCCCCCcccccccccccccc--cccccCCChhHHHHH
Q 042742 211 VSGT-NVGGGTYWGLGRLLTKCKSF--DELLELSQRGDNR-DHRHIGLSASTIASSFGKTISD--KKELADYRPEDISLS 284 (834)
Q Consensus 211 vgGt-siGGGTf~GL~~LLtg~~~f--deil~LA~~Gd~~-dy~~~GL~~d~iASsFGK~~~~--~~~~~~~~~eDia~S 284 (834)
++.| -.+-|.|+--+..++|.... .++-++|.+|+.. .|+. .+... .-+|-.+... ....++.+++|||++
T Consensus 145 l~~t~d~s~GrlfDava~~LGl~~~G~~~le~la~~~~~~~~~~~-~~~~~--~~~fs~l~~~~~~~~~~~~~~~diAas 221 (322)
T TIGR03722 145 FGETLDIGLGNALDKFAREVGLGHPGGPKIEELAEKGKEYIELPY-TVKGM--DLSFSGLLTAALRAYKKGARLEDVCYS 221 (322)
T ss_pred EEEeccccchHHHHHHHHHhCCCCCChHHHHHHHhcCCCcccCCc-cCCCC--cCchHHHHHHHHHHHHcCCCHHHHHHH
Confidence 9987 47888888888888886431 1455577777531 2210 11111 1123211110 000113457999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHHHHHhc
Q 042742 285 LLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAFMS 357 (834)
Q Consensus 285 Ll~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAlGA~L~ 357 (834)
+...+.+.+..++..+.+.+|+++|+++|+...|..+...+... +...+++++ .....|.|--|+++-
T Consensus 222 fq~~l~~~l~~~a~~~~~~~g~~~lvlsGGVa~N~~L~~~l~~~----l~~~g~~v~-~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 222 LQETAFAMLVEVTERALAHTGKKEVLLVGGVAANRRLREMLELM----AEDRGAKFY-VPPPEYAGDNGAMIA 289 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHH----HHHCCCEEE-cCCCCCCchHHHHHH
Confidence 99999999999999999999999999999999999877654432 223456554 555667777666653
No 29
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=97.34 E-value=0.034 Score=60.77 Aligned_cols=78 Identities=10% Similarity=-0.042 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHh-h-cc-CCCceEeeccCCchhhHHHHHh
Q 042742 280 DISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQ-F-WS-KGEAQAMFLRHEGFLGALGAFM 356 (834)
Q Consensus 280 Dia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~-f-ws-~g~~~a~Fl~h~gy~GAlGA~L 356 (834)
..|+.++.-.+..+++.........+.+.|+++|.+...+.+. ..+...++ . +. ....+...-+.+...+++||+.
T Consensus 220 ~~a~~~~~~~~~~la~~l~n~~~~ldP~~IvlgG~~~~~~~~~-~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~ 298 (303)
T PRK13310 220 EQAVAHVERYLDLLAICLGNILTIVDPHLVVLGGGLSNFDAIY-EQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAF 298 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccChHHHH-HHHHHHHHHHhcccccCceEEEcccCchHHHHhHHH
Confidence 3577788888888888887778889999999999887754433 34444443 1 21 1245667778899999999987
Q ss_pred cc
Q 042742 357 SY 358 (834)
Q Consensus 357 ~~ 358 (834)
.+
T Consensus 299 ~~ 300 (303)
T PRK13310 299 LH 300 (303)
T ss_pred Hh
Confidence 54
No 30
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=97.31 E-value=0.083 Score=57.40 Aligned_cols=78 Identities=12% Similarity=0.046 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhccC-CCceEeeccCCchhhHHHHHhccc
Q 042742 281 ISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSK-GEAQAMFLRHEGFLGALGAFMSYE 359 (834)
Q Consensus 281 ia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~-g~~~a~Fl~h~gy~GAlGA~L~~~ 359 (834)
.|..++.-.+..+++.........+.++|+++|.+.....+. ..+...++-... ...+...-..+...+++||+....
T Consensus 209 ~a~~~~~~~~~~la~~l~~l~~~~dpe~IvlgG~~~~~~~~~-~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 209 QAQALINRSAQAIARLIADLKATLDCQCVVLGGSVGLAEGYL-ELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCccccHHHHH-HHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 466778888888888877778889999999999876544433 334444432211 145667777889999999998653
No 31
>PRK03011 butyrate kinase; Provisional
Probab=97.24 E-value=0.0036 Score=70.69 Aligned_cols=160 Identities=17% Similarity=0.156 Sum_probs=88.6
Q ss_pred ccEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCCC------C-CCCCCCCccc
Q 042742 186 FPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNR------D-HRHIGLSAST 258 (834)
Q Consensus 186 ~PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~~------d-y~~~GL~~d~ 258 (834)
.-++++.+|+|+|+-.+.+ ++-.+......|.|-|++. ..|.-+...+..+...|... . +.+-||.+-+
T Consensus 176 ~n~I~~hLGtGig~gai~~-Gk~idgs~g~agEG~~~~~---R~G~l~~~~~~~~~~~g~~s~~~l~~~l~~~~Gl~~~~ 251 (358)
T PRK03011 176 LNLIVAHLGGGISVGAHRK-GRVIDVNNALDGEGPFSPE---RAGGLPVGDLVELCFSGKYTKEELKKKLVGKGGLVAYL 251 (358)
T ss_pred CcEEEEEeCCCceeeEEEC-CEEEecCCccCCCCCcccC---cccCcCcHHHHHHHhcCCCCHHHHHHHHHhccCccccc
Confidence 3599999999999766655 3443333332365666541 22333333333333333320 0 0111232211
Q ss_pred ccccccccccccccccCC-ChhHHHHHHHHHHHHHHHH-HHHHHHHHc-CCCEEEEecccccCcchhHHHHHHHHhhccC
Q 042742 259 IASSFGKTISDKKELADY-RPEDISLSLLRMISYNIGQ-ISYLNALRF-GLKRIFFGGFFIRGHAYTMDTISFAVQFWSK 335 (834)
Q Consensus 259 iASsFGK~~~~~~~~~~~-~~eDia~SLl~mI~~nIgq-lA~l~A~~~-~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~ 335 (834)
=.+.+-.+.. .+ .-...|+.++.+.++.|+. ++.+.+... +++.|+|||+...+.. ....+...+.|.
T Consensus 252 gs~d~reV~~------~a~~GD~~A~~ald~~~~~lak~I~~l~~~L~gdpD~IVlgGGI~~~~~-l~~~I~~~l~~~-- 322 (358)
T PRK03011 252 GTNDAREVEK------RIEEGDEKAKLVYEAMAYQIAKEIGAMAAVLKGKVDAIVLTGGLAYSKR-LVERIKERVSFI-- 322 (358)
T ss_pred CCCCHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCccccCHH-HHHHHHHHHHhh--
Confidence 0011111210 11 1134688899999999986 444444443 7999999999887544 444565666655
Q ss_pred CCceEeeccCCchhhHHHHHhcc
Q 042742 336 GEAQAMFLRHEGFLGALGAFMSY 358 (834)
Q Consensus 336 g~~~a~Fl~h~gy~GAlGA~L~~ 358 (834)
+.+.++--+.+.=++|+||+-..
T Consensus 323 ~pv~i~p~~~e~~A~a~GA~rvl 345 (358)
T PRK03011 323 APVIVYPGEDEMEALAEGALRVL 345 (358)
T ss_pred CCeEEEeCCCHHHHHHHHHHHHH
Confidence 45666666677789999997543
No 32
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=97.21 E-value=0.028 Score=60.94 Aligned_cols=130 Identities=16% Similarity=0.133 Sum_probs=80.0
Q ss_pred EEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCCCCCCCCCCCcccccccccccc
Q 042742 188 YLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNRDHRHIGLSASTIASSFGKTI 267 (834)
Q Consensus 188 yLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~~dy~~~GL~~d~iASsFGK~~ 267 (834)
-++|+||.|++=+-+-.+++........+||..|---...-.+ .+++|.-++-...
T Consensus 137 ~~vvDIGggtt~i~v~~~g~~~~~~~~~~GG~~it~~Ia~~l~-i~~~eAE~lK~~~----------------------- 192 (267)
T PRK15080 137 GAVVDIGGGTTGISILKDGKVVYSADEPTGGTHMSLVLAGAYG-ISFEEAEQYKRDP----------------------- 192 (267)
T ss_pred cEEEEeCCCcEEEEEEECCeEEEEecccCchHHHHHHHHHHhC-CCHHHHHHHHhcc-----------------------
Confidence 4899999999844443345677777788999888665544445 3466543322110
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCc
Q 042742 268 SDKKELADYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEG 347 (834)
Q Consensus 268 ~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~g 347 (834)
.++++ ...++..+.+.|.+...-.-+...+..||++|+-.+-+.+.. .++..+ ++++....++.
T Consensus 193 --------~~~~~-~~~ii~~~~~~i~~~i~~~l~~~~~~~IvLtGG~s~lpgl~e-~l~~~l------g~~v~~~~~P~ 256 (267)
T PRK15080 193 --------KHHKE-IFPVVKPVVEKMASIVARHIEGQDVEDIYLVGGTCCLPGFEE-VFEKQT------GLPVHKPQHPL 256 (267)
T ss_pred --------CCHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCcccchhHHH-HHHHHh------CCCcccCCCch
Confidence 01111 223344444444444333334458899999998888887654 344443 45566679999
Q ss_pred hhhHHHHHhc
Q 042742 348 FLGALGAFMS 357 (834)
Q Consensus 348 y~GAlGA~L~ 357 (834)
|.+|+||++.
T Consensus 257 ~~~a~Gaa~~ 266 (267)
T PRK15080 257 FVTPLGIALS 266 (267)
T ss_pred HHHHHHHHhh
Confidence 9999999874
No 33
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=97.21 E-value=0.0065 Score=71.87 Aligned_cols=213 Identities=14% Similarity=0.065 Sum_probs=136.4
Q ss_pred CCHHHHHHHHHh-cccc---cCcEEEeCC-c-------cccchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceE
Q 042742 102 TKISECLDFIHS-KQLH---RGGIHATGG-G-------AYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFT 169 (834)
Q Consensus 102 ~~i~~~l~fi~~-~~~~---~~~i~~TGG-G-------A~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~ 169 (834)
..|...++.+.+ .++. ...|.+|.| | ..-++.-+...+++++.-++-+.||+..+.+..+
T Consensus 50 ~~l~~~i~~~l~~~~~~~~~id~iav~~gPg~~~~l~vg~~~ak~la~~~~~~~~~v~h~~aH~~~a~~~~~-------- 121 (535)
T PRK09605 50 EAIPKVIKEALEEAGLKPEDIDLVAFSQGPGLGPCLRVVATAARALALSLDVPLIGVNHCVAHVEIGRLTTG-------- 121 (535)
T ss_pred HHHHHHHHHHHHHcCCCHhhCCEEEECCCCCcHhhHHHHHHHHHHHHHHhCCCeecccHHHHHHHHhhhccC--------
Confidence 344444444433 2332 234777755 2 2334666777889999999999999987665321
Q ss_pred eecCceeeeecCCCCCccEEEEEcCCceEEEEEcCCCceEEeccc-ccCchhHHHHHHhhcCCCCHH--HHHHHhcCCCC
Q 042742 170 HMEGQKEFVQIDTNDLFPYLLVNIGSGVSMIKVDGDGKFERVSGT-NVGGGTYWGLGRLLTKCKSFD--ELLELSQRGDN 246 (834)
Q Consensus 170 ~~~~~~~~~~~~~~~~~PyLlVNIGSGvSiikV~~~~~f~RvgGt-siGGGTf~GL~~LLtg~~~fd--eil~LA~~Gd~ 246 (834)
..+|..|+--|..++++.+++ ++|+.++.| -..-|.++--+..++|..... ++..+|..|+.
T Consensus 122 --------------~~~~l~l~vsGg~t~~~~~~~-~~~~~l~~t~d~S~G~~fD~va~~Lg~~~~g~~~le~lA~~~~~ 186 (535)
T PRK09605 122 --------------AEDPVTLYVSGGNTQVLAYLN-GRYRVFGETLDIGVGNALDKFARHVGLPHPGGPKIEKLAKDGKK 186 (535)
T ss_pred --------------CCCCeEEEEecCCeEEEEEcC-CeEEEEEeecchhhhHHHHHHHHHhCCCCCCCHHHHHHHhcCCC
Confidence 125666666677777888887 789999987 367777877777777754322 35667777764
Q ss_pred C-CCCCCCCCcccccccccccccc--cccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhH
Q 042742 247 R-DHRHIGLSASTIASSFGKTISD--KKELADYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTM 323 (834)
Q Consensus 247 ~-dy~~~GL~~d~iASsFGK~~~~--~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m 323 (834)
. .|+. .+... .-||-.+... ....++.+.+|||+++..++.+.+..++..+.+.+|+++|+++|+...|..+..
T Consensus 187 ~~~~~~-~~~~~--~~~~~~l~~~~~~~~~~~~~~~~iA~~~q~~l~~~l~~~~~~~~~~~g~~~lvlsGGVa~N~~l~~ 263 (535)
T PRK09605 187 YIDLPY-VVKGM--DFSFSGLLTAAKRAYDAGEPLEDVCYSLQETAFAMLTEVTERALAHTGKDEVLLVGGVAANNRLRE 263 (535)
T ss_pred cccCCC-cCCCC--CEeehHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHH
Confidence 1 1211 11000 0123222110 000112356899999999999999999999999999999999999999998776
Q ss_pred HHHHHHHhhccCCCceEeecc
Q 042742 324 DTISFAVQFWSKGEAQAMFLR 344 (834)
Q Consensus 324 ~~ls~ai~fws~g~~~a~Fl~ 344 (834)
.+....- ..+.+++|.+
T Consensus 264 ~l~~~~~----~~~~~v~~~~ 280 (535)
T PRK09605 264 MLKEMCE----ERGADFYVPE 280 (535)
T ss_pred HHHHHHH----HCCCEEECCC
Confidence 5443221 3356666654
No 34
>PRK00292 glk glucokinase; Provisional
Probab=97.17 E-value=0.041 Score=60.70 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccccc-CcchhHH-HHHHHHhhccCC------CceEeeccCCchhh
Q 042742 280 DISLSLLRMISYNIGQISYLNALRFGLK-RIFFGGFFIR-GHAYTMD-TISFAVQFWSKG------EAQAMFLRHEGFLG 350 (834)
Q Consensus 280 Dia~SLl~mI~~nIgqlA~l~A~~~~i~-~I~f~G~fi~-~~~~~m~-~ls~ai~fws~g------~~~a~Fl~h~gy~G 350 (834)
.+|..++......+|......+...+.+ .||++|+.+. ..++-.. .+.. .|..+. ..-+.++...+.+|
T Consensus 228 ~~A~~~~~~~~~~lg~~i~~l~~~~~P~~~vvi~Gg~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~ag 305 (316)
T PRK00292 228 PLCRRTLSLFCVILGRVAGNLALTLGARGGVYIAGGIVPRFLEFFKASGFRA--AFEDKGRFSAYLADIPVYVITHPQPG 305 (316)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEeCchHHhHHhhhccHHHHH--HHhcCCChhhHHhcCCEEEEcCCChH
Confidence 4678899999999999888889999998 8999998874 3333222 1111 222211 11223456677999
Q ss_pred HHHHHhcc
Q 042742 351 ALGAFMSY 358 (834)
Q Consensus 351 AlGA~L~~ 358 (834)
-+||+...
T Consensus 306 l~GAa~~~ 313 (316)
T PRK00292 306 LLGAGAYL 313 (316)
T ss_pred HHHHHHHH
Confidence 99997643
No 35
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=97.06 E-value=0.011 Score=65.66 Aligned_cols=191 Identities=17% Similarity=0.178 Sum_probs=122.9
Q ss_pred ccchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccEEE--EEcCCceEEEEEcCCC
Q 042742 129 YKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPYLL--VNIGSGVSMIKVDGDG 206 (834)
Q Consensus 129 ~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~PyLl--VNIGSGvSiikV~~~~ 206 (834)
.-++.-+...+++++.-++-++||+..+.+-.+ ...+|+++ |+-|. +.++.+.+++
T Consensus 90 ~~~Ak~la~~~~~p~~~v~h~~aha~~a~~~s~---------------------~~~~~~lvL~vdgg~-s~~~~~~~~~ 147 (314)
T TIGR03723 90 VSFAKALALALNKPLIGVNHLEGHLLAPFLEDK---------------------PLEFPFLALLVSGGH-TQLVLVKGVG 147 (314)
T ss_pred HHHHHHHHHHhCCCEEecccHHHHHHhhhhccC---------------------CCCCCEEEEEEeCCC-cEEEEEecCC
Confidence 345666777889999999999999875543211 12356644 44443 2356666678
Q ss_pred ceEEeccc-ccCchhHHHHHHhhcCCCCHH--HHHHHhcCCCCCCCCC-CCCC-ccccccccccccc------cc--ccc
Q 042742 207 KFERVSGT-NVGGGTYWGLGRLLTKCKSFD--ELLELSQRGDNRDHRH-IGLS-ASTIASSFGKTIS------DK--KEL 273 (834)
Q Consensus 207 ~f~RvgGt-siGGGTf~GL~~LLtg~~~fd--eil~LA~~Gd~~dy~~-~GL~-~d~iASsFGK~~~------~~--~~~ 273 (834)
+++.++.| ..+=|-|+.-+..++|-...+ ++..||..|+...+.- ..+. ..-...||..... +. ...
T Consensus 148 ~~~~l~~t~d~SlG~~yd~vt~~LG~~~~~g~kvmgLA~~g~~~~~~~~~~~~~~~~~~~sfsg~~~~~~~~~~~~~~~~ 227 (314)
T TIGR03723 148 DYELLGETLDDAAGEAFDKVARLLGLGYPGGPAIDKLAKEGDPKAFKFPRPMTGRPGLDFSFSGLKTAVLNLIEKLKQKG 227 (314)
T ss_pred eEEEeeccCCchhhHHHHHHHHHcCCCCCCcHHHHHHHhhCCCCEeECChhhccCCCCCEecccHHHHHHHHHHhcccCc
Confidence 99999987 366677887777777864333 4899999888522210 0010 0012223321110 00 000
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccC
Q 042742 274 ADYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRH 345 (834)
Q Consensus 274 ~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h 345 (834)
++..+.|||+++...+.+.+..++..+.+.+++++|+++|+...|..+...+.... ...++++++.+.
T Consensus 228 ~~~~~~~iA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~~----~~~~~~v~~~~~ 295 (314)
T TIGR03723 228 EELDKADIAASFQAAVVDVLVEKTKRALKKTGLKTLVVAGGVAANSRLRERLEELA----EKAGLEVFIPPL 295 (314)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHHH----HHCCCEEECCCC
Confidence 12357899999999999999999999999999999999999999998876544432 234566655443
No 36
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=96.86 E-value=0.057 Score=60.08 Aligned_cols=263 Identities=21% Similarity=0.272 Sum_probs=136.4
Q ss_pred EEEEeccceeEEEEEeecCCCccchhhhhhhhhhccccCCCCcCCCCCCCeEEEeEeecCCHHHHHHHHHhc------cc
Q 042742 43 LALDIGGSLIKLVYFSRHEDQSIDDKRKKTIKERLGISNGNRRSYPILGGRLHFVKFETTKISECLDFIHSK------QL 116 (834)
Q Consensus 43 ~giDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~~i~~~l~fi~~~------~~ 116 (834)
++-|||||-+-+..+...... ---++..+|++++.+.+.+.+.+- ..
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~---------------------------~~~~~~~~~~~~~~~s~~~~l~~~l~~~~~~~ 53 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGP---------------------------LQLIDIRRYPSADFPSFEDALADYLAELDAGG 53 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG----------------------------EEEEEEEEEGCCCCHHHHHHHHHHHHTCHHH
T ss_pred CeEEeCcccEEEEEEEcCCCC---------------------------ccccccEEEecCCcCCHHHHHHHHHHhcccCC
Confidence 357999999999998854210 002455678888766655544331 11
Q ss_pred cc---CcEEEeC---Cccccc--------hhHHHHHhCCC-cccchhhHHHHHHHHHHHhcccccceEeecCceeeeecC
Q 042742 117 HR---GGIHATG---GGAYKF--------ADLFKERLGVS-LDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQID 181 (834)
Q Consensus 117 ~~---~~i~~TG---GGA~k~--------~~~~~~~lgi~-~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~ 181 (834)
.. ..|.+-| ++..++ .+.+.+.+|++ +.-++.|++...|+-.|-+. +..+...+ .
T Consensus 54 ~~p~~~~iavAGPV~~~~~~lTN~~W~i~~~~l~~~lg~~~v~liNDfeA~a~gl~~L~~~---~l~~l~~g-------~ 123 (316)
T PF02685_consen 54 PEPDSACIAVAGPVRDGKVRLTNLPWTIDADELAQRLGIPRVRLINDFEAQAYGLPALDPE---DLVTLQPG-------E 123 (316)
T ss_dssp TCEEEEEEEESS-EETTCEE-SSSCCEEEHHHCHCCCT-TCEEEEEHHHHHHHHHHHHHHC---CECCHCCE-------E
T ss_pred CccceEEEEEecCccCCEEEecCCCccccHHHHHHHhCCceEEEEcccchheeccCCCCHH---HeeeccCC-------C
Confidence 11 1133333 333333 34467788884 77899999999999987642 22222111 1
Q ss_pred CCCCccEEEEEcCCceE--EEEEcCCCceEEecccccCchhH-------HHHHHhh---cCCCCHHHHHHHhcCCCC--C
Q 042742 182 TNDLFPYLLVNIGSGVS--MIKVDGDGKFERVSGTNVGGGTY-------WGLGRLL---TKCKSFDELLELSQRGDN--R 247 (834)
Q Consensus 182 ~~~~~PyLlVNIGSGvS--iikV~~~~~f~RvgGtsiGGGTf-------~GL~~LL---tg~~~fdeil~LA~~Gd~--~ 247 (834)
..+.-|.+|+..|||.- .+.-++ +.+. +=-|=-|=-.| +.|.+.| .+.-++|.++. |.- .
T Consensus 124 ~~~~~~~~Vig~GTGLG~a~l~~~~-~~~~-v~~sEgGH~~fap~~~~e~~l~~~l~~~~~~vs~E~vlS----G~GL~~ 197 (316)
T PF02685_consen 124 PDPGGPRAVIGPGTGLGVALLVPDG-DGYY-VLPSEGGHVDFAPRTDEEAELLRFLRRRYGRVSVERVLS----GRGLEN 197 (316)
T ss_dssp SSTTS-EEEEEESSSEEEEEEEEET-TEEE-EEEE-GGGSB---SSHHHHHHHHHHHHHCTS-BHHHCSS----HHHHHH
T ss_pred CCCCCcEEEEEcCCCcEEEEEEecC-CceE-eCCCccccccCCCCCHHHHHHHHHHHHhcCCceeEeecc----hhhHHH
Confidence 34567899999998754 444443 2332 21111111111 1222111 12223333221 100 0
Q ss_pred CCC----CCC-----CCcccccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEeccccc
Q 042742 248 DHR----HIG-----LSASTIASSFGKTISDKKELADYRPEDISLSLLRMISYNIGQISYLNALRFGLKR-IFFGGFFIR 317 (834)
Q Consensus 248 dy~----~~G-----L~~d~iASsFGK~~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~-I~f~G~fi~ 317 (834)
-|. ..| +++..|+.. .......+|+-.+.+...-.|+.|--.|..+.... ||++|+...
T Consensus 198 ly~~l~~~~~~~~~~~~~~~I~~~-----------A~~~~d~~a~~al~~f~~~lg~~agdlaL~~~a~gGvyiaGGI~~ 266 (316)
T PF02685_consen 198 LYRFLAGERGAEPPLLSAAEISAA-----------ALEGGDPLAREALDLFARILGRVAGDLALTFLARGGVYIAGGIAP 266 (316)
T ss_dssp HHHHHHCCTT--S----HHHHHHH-----------HHCT--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEE-TTGG
T ss_pred HHHHHHhccCCCCCCCCHHHHHHH-----------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeEEEecchhh
Confidence 000 001 111111100 00123456777899999999999999999999987 999999977
Q ss_pred CcchhHHHHHHHHhhccCCCce------EeeccCCchhhHHHHHhccc
Q 042742 318 GHAYTMDTISFAVQFWSKGEAQ------AMFLRHEGFLGALGAFMSYE 359 (834)
Q Consensus 318 ~~~~~m~~ls~ai~fws~g~~~------a~Fl~h~gy~GAlGA~L~~~ 359 (834)
...-.+..-.+--.|-.|+.++ ++++--....|=+||+..+.
T Consensus 267 ~~~~~l~~~~F~~~F~~kg~~~~~l~~iPv~li~~~~~gL~Gaa~~a~ 314 (316)
T PF02685_consen 267 RLLPLLDESAFREAFEDKGRMSDLLEDIPVYLITDPDAGLLGAAAYAR 314 (316)
T ss_dssp GGHHHHHCSSHHHHHH--GGGHHHHTT--EEEE--S-HHHHHHHHHHH
T ss_pred HHHHHcChhHHHHHHhccCCcHHHHhcCcEEEEeCCCHHHHHHHHHHh
Confidence 6654443334545566677655 56666677899999987654
No 37
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=96.82 E-value=0.042 Score=61.79 Aligned_cols=203 Identities=14% Similarity=0.139 Sum_probs=124.1
Q ss_pred cEEEeCC-c-------cccchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccEEEE
Q 042742 120 GIHATGG-G-------AYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPYLLV 191 (834)
Q Consensus 120 ~i~~TGG-G-------A~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~PyLlV 191 (834)
.|.+|-| | ..-++.-+.-.+++++.-++.|++|+.-.. +.. ...|| |.+
T Consensus 73 ~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~~PligV~HlegHi~a~~-l~~---------------------~~~~P-l~L 129 (345)
T PTZ00340 73 LICYTKGPGMGAPLSVGAVVARTLSLLWGKPLVGVNHCVAHIEMGR-LVT---------------------GAENP-VVL 129 (345)
T ss_pred EEEEecCCCcHhhHHHHHHHHHHHHHHcCCCEeecchHHHHHHHHh-hcc---------------------CCCCC-eEE
Confidence 3666654 2 345667777889999999999999998544 321 12367 444
Q ss_pred EcCCceEEEEEcCCCceEEecccc---cCc-----hhHHHHHHhhcCCCCHHHHHHHhcCCCCCCCCCCCCCcccccccc
Q 042742 192 NIGSGVSMIKVDGDGKFERVSGTN---VGG-----GTYWGLGRLLTKCKSFDELLELSQRGDNRDHRHIGLSASTIASSF 263 (834)
Q Consensus 192 NIGSGvSiikV~~~~~f~RvgGts---iGG-----GTf~GL~~LLtg~~~fdeil~LA~~Gd~~dy~~~GL~~d~iASsF 263 (834)
-+=.|.+.+...+.++|+.+|+|. +|- |..+||... - .-=-.|-++|++|++ +-.+..+..-.--||
T Consensus 130 lVSGGhT~l~~~~~~~~~ilG~T~Dda~Gea~DKvar~LGL~~y-p--~gGp~iE~lA~~g~~--~~~~P~~~~~~dfSF 204 (345)
T PTZ00340 130 YVSGGNTQVIAYSEHRYRIFGETIDIAVGNCLDRFARLLNLSND-P--APGYNIEQLAKKGKN--LIELPYVVKGMDMSF 204 (345)
T ss_pred EEeCCceEEEEecCCeEEEEEeecccchhHHHHHHHHHhCCCCC-C--CChHHHHHHHhhCCC--ccCCCCCCCCCcEEC
Confidence 444455543346668999999993 552 444444210 0 012345567888865 111111111111233
Q ss_pred cccc-------ccccc-------c-c--CCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHH
Q 042742 264 GKTI-------SDKKE-------L-A--DYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTI 326 (834)
Q Consensus 264 GK~~-------~~~~~-------~-~--~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~l 326 (834)
.=+. ...+. . + +..++|||+|+...|...+.+....+.+.+++++|+++|+...|..++....
T Consensus 205 SGlkTav~~~i~~~~~~~~~~~~~~~~~~~~~~diaasfq~~v~~~L~~k~~~a~~~~~~~~lvv~GGVAaN~~LR~~l~ 284 (345)
T PTZ00340 205 SGILTYIEDLVEHPQFKDVVSEIVPPEEEFFTDDLCFSLQETIFAMLVEVTERAMSHCGSNEVLIVGGVGCNLRLQEMMQ 284 (345)
T ss_pred ccHHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCHHHHHHHHHHHH
Confidence 3211 00000 0 0 2347899999999999999999999999999999999999999999876544
Q ss_pred HHHHhhccCCCceEeeccCCchhhHHHHH
Q 042742 327 SFAVQFWSKGEAQAMFLRHEGFLGALGAF 355 (834)
Q Consensus 327 s~ai~fws~g~~~a~Fl~h~gy~GAlGA~ 355 (834)
..+- +.+.+.+| ....|++==||+
T Consensus 285 ~~~~----~~~~~~~~-p~~~~ctDNaaM 308 (345)
T PTZ00340 285 QMAK----ERGGKLFA-MDERYCIDNGAM 308 (345)
T ss_pred HHHH----HcCCEEEe-CChHhhhhhHHH
Confidence 4332 33566655 456676544443
No 38
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=96.77 E-value=0.056 Score=57.66 Aligned_cols=130 Identities=17% Similarity=0.172 Sum_probs=76.1
Q ss_pred EEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCCCCCCCCCCCcccccccccccc
Q 042742 188 YLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNRDHRHIGLSASTIASSFGKTI 267 (834)
Q Consensus 188 yLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~~dy~~~GL~~d~iASsFGK~~ 267 (834)
.++++||.|++=+.+-..++........+||-.|---...-.+ -++++.-++ ++- . |.
T Consensus 110 ~~vvDiGggtt~i~i~~~G~i~~~~~~~~GG~~it~~Ia~~~~-i~~~~AE~~-K~~-~-----------------~~-- 167 (239)
T TIGR02529 110 GAVVDVGGGTTGISILKKGKVIYSADEPTGGTHMSLVLAGAYG-ISFEEAEEY-KRG-H-----------------KD-- 167 (239)
T ss_pred cEEEEeCCCcEEEEEEECCeEEEEEeeecchHHHHHHHHHHhC-CCHHHHHHH-HHh-c-----------------CC--
Confidence 4899999999855444445666665667777665443333333 235543332 110 0 00
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCc
Q 042742 268 SDKKELADYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEG 347 (834)
Q Consensus 268 ~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~g 347 (834)
.+ ...++...++..+.+-|... -+..+++.|+++|+-.+.+-+.. .++..+ ++++.-..++.
T Consensus 168 -~~------~~~~~i~~~~~~i~~~i~~~----l~~~~~~~v~LtGG~a~ipgl~e-~l~~~l------g~~v~~~~~P~ 229 (239)
T TIGR02529 168 -EE------EIFPVVKPVYQKMASIVKRH----IEGQGVKDLYLVGGACSFSGFAD-VFEKQL------GLNVIKPQHPL 229 (239)
T ss_pred -HH------HHHHHHHHHHHHHHHHHHHH----HHhCCCCEEEEECchhcchhHHH-HHHHHh------CCCcccCCCCC
Confidence 00 01223344444444433332 34568899999999988887654 344433 55666789999
Q ss_pred hhhHHHHHhc
Q 042742 348 FLGALGAFMS 357 (834)
Q Consensus 348 y~GAlGA~L~ 357 (834)
|.+|+||+|+
T Consensus 230 ~~va~Gaa~~ 239 (239)
T TIGR02529 230 YVTPLGIAMS 239 (239)
T ss_pred eehhheeecC
Confidence 9999999873
No 39
>PRK09698 D-allose kinase; Provisional
Probab=96.49 E-value=0.21 Score=54.51 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhh--c---cCCCceEeeccCCchhhHHHHHhccc
Q 042742 286 LRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQF--W---SKGEAQAMFLRHEGFLGALGAFMSYE 359 (834)
Q Consensus 286 l~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~f--w---s~g~~~a~Fl~h~gy~GAlGA~L~~~ 359 (834)
+..+...+++.........+...|+++|.+....++....+...++= + .....+..+..++...+++||++...
T Consensus 217 ~~~~~~~la~~l~~li~~ldP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 217 IQSLLENLARAIATSINLFDPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 34444555554444566889999999999887665444344333431 1 23356778888899999999998653
No 40
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=95.74 E-value=0.23 Score=54.88 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecccc
Q 042742 280 DISLSLLRMISYNIGQISYLNALRFGLK-RIFFGGFFI 316 (834)
Q Consensus 280 Dia~SLl~mI~~nIgqlA~l~A~~~~i~-~I~f~G~fi 316 (834)
.+|+.++......+|+.+...+...+.+ -||+.|+.+
T Consensus 234 ~~A~~~~~~~~~~lg~~i~nl~~~ldpeggv~v~GG~~ 271 (316)
T TIGR00749 234 TDCRRALSLFCVIYGRFAGNLALNLGTRGGVYIAGGIV 271 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEECcHH
Confidence 4899999999999999999999999997 566766665
No 41
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.66 Score=51.97 Aligned_cols=210 Identities=17% Similarity=0.159 Sum_probs=135.2
Q ss_pred cEEEeCCc--------cccchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccEEEE
Q 042742 120 GIHATGGG--------AYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPYLLV 191 (834)
Q Consensus 120 ~i~~TGGG--------A~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~PyLlV 191 (834)
-|.+|=|= -.-++.-+.-.++++++-++-|.+|+.-..+-.+ . .|||+..
T Consensus 74 ~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~kPli~VnH~~gHi~a~~l~~~---------------------~-~~p~v~L 131 (342)
T COG0533 74 AIAVTAGPGLGGALLVGATAAKALALALNKPLIPVNHLEGHIEAARLETG---------------------L-AFPPVAL 131 (342)
T ss_pred EEEEecCCCchhHHHHHHHHHHHHHHHhCCCEeecchHHHHHHHHHhccC---------------------C-CCCcEEE
Confidence 37777541 2335666677789999999999999977654321 1 4666544
Q ss_pred E-cCCceEEEEEcCCCceEEecccc---cCchhHHHHHHhh-cCCCCHHHHHHHhcCCCCCCCC--CCCCCccccccccc
Q 042742 192 N-IGSGVSMIKVDGDGKFERVSGTN---VGGGTYWGLGRLL-TKCKSFDELLELSQRGDNRDHR--HIGLSASTIASSFG 264 (834)
Q Consensus 192 N-IGSGvSiikV~~~~~f~RvgGts---iGGGTf~GL~~LL-tg~~~fdeil~LA~~Gd~~dy~--~~GL~~d~iASsFG 264 (834)
- -|.=|.++.|.+.++|+.+|-|. +|- .|=-.+++| ++..-=-+|-+||++|++..|. .-....+...-||-
T Consensus 132 lVSGGHTqli~~~~~g~y~ilGeTlDdA~Ge-a~DKvAR~lGL~yPGGp~Ie~lA~~G~~~~~~fP~~~~~~~~~DfSFS 210 (342)
T COG0533 132 LVSGGHTQLIAVRGIGRYEVLGETLDDAAGE-AFDKVARLLGLGYPGGPAIEKLAKKGDPDAFEFPRPMVKGKNLDFSFS 210 (342)
T ss_pred EEecCceEEEEEcCCCcEEEEeeechhhhhH-HHHHHHHHhCCCCCCcHHHHHHHhcCCCCceeCCccccCCCCcceehH
Confidence 4 56667799999888999999984 543 333334443 1222223888899999973221 11122223344554
Q ss_pred cccc-------ccccccC---CChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhcc
Q 042742 265 KTIS-------DKKELAD---YRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWS 334 (834)
Q Consensus 265 K~~~-------~~~~~~~---~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws 334 (834)
=+.+ ..+..++ ..++|||+|+-..+...+.+..--+.+.++.++++.+|+...|..++..... ...
T Consensus 211 GLkTa~~~~~~~~~~~~~~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~~~~lvi~GGVaaN~~LR~~l~~-~~~--- 286 (342)
T COG0533 211 GLKTAVLRLLKKLKQKEELNEEDKEDIAASFQEAVFDMLVEKTERALKHTGKKELVIAGGVAANSRLREMLEE-MCK--- 286 (342)
T ss_pred hHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeccHHHhHHHHHHHHH-HHH---
Confidence 2211 0010012 3466799999999999999999999999999999999999999988753322 221
Q ss_pred CCCceEeeccCCchhhHHHHHhc
Q 042742 335 KGEAQAMFLRHEGFLGALGAFMS 357 (834)
Q Consensus 335 ~g~~~a~Fl~h~gy~GAlGA~L~ 357 (834)
..+.+.+| ....|++==||++.
T Consensus 287 ~~g~~~~~-p~~~lCtDNaaMIA 308 (342)
T COG0533 287 ERGAEVYI-PPLELCTDNAAMIA 308 (342)
T ss_pred hcCCEEEc-CChHhccchHHHHH
Confidence 22355544 56777776666664
No 42
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=95.38 E-value=0.57 Score=47.54 Aligned_cols=76 Identities=18% Similarity=0.110 Sum_probs=60.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHH--cCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHH
Q 042742 275 DYRPEDISLSLLRMISYNIGQISYLNALR--FGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGAL 352 (834)
Q Consensus 275 ~~~~eDia~SLl~mI~~nIgqlA~l~A~~--~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAl 352 (834)
+.+++|++++++..++..+-++--...+. ..+++|+.+|+..+|+. -|+.++-.+ +..+..+++ ...+|+
T Consensus 117 ~~~~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~-~~q~~Advl------~~~V~~~~~-~e~~a~ 188 (198)
T PF02782_consen 117 DTTRADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPL-WMQILADVL------GRPVVRPEV-EEASAL 188 (198)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHH-HHHHHHHHH------TSEEEEESS-STHHHH
T ss_pred ccCHHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChH-HHHHHHHHh------CCceEeCCC-CchHHH
Confidence 45699999999999999999987766655 56689999999997665 555677666 566655555 899999
Q ss_pred HHHhcc
Q 042742 353 GAFMSY 358 (834)
Q Consensus 353 GA~L~~ 358 (834)
||++.+
T Consensus 189 GaA~~A 194 (198)
T PF02782_consen 189 GAALLA 194 (198)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999865
No 43
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=95.10 E-value=2.5 Score=47.06 Aligned_cols=142 Identities=14% Similarity=0.061 Sum_probs=79.3
Q ss_pred EEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCCCCCCCCCCCcccccccccccc
Q 042742 188 YLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNRDHRHIGLSASTIASSFGKTI 267 (834)
Q Consensus 188 yLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~~dy~~~GL~~d~iASsFGK~~ 267 (834)
.++|+||.+++-+.+-.+++.....-..+||..+-.-.....+ -++++.-++-.++. .+.+
T Consensus 190 ~~lvdiG~~~t~l~i~~~g~~~~~r~i~~G~~~i~~~i~~~~~-~~~~~Ae~~k~~~~--------~~~~---------- 250 (348)
T TIGR01175 190 AALVDIGATSSTLNLLHPGRMLFTREVPFGTRQLTSELSRAYG-LNPEEAGEAKQQGG--------LPLL---------- 250 (348)
T ss_pred EEEEEECCCcEEEEEEECCeEEEEEEeechHHHHHHHHHHHcC-CCHHHHHHHHhcCC--------CCCc----------
Confidence 8999999999966666556777777778999887655544445 35777655433221 1110
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHc---CCCEEEEecccccCcchhHHHHHHHHhh-------ccCCC
Q 042742 268 SDKKELADYRPEDISLSLLRMISYNIGQISYLNALRF---GLKRIFFGGFFIRGHAYTMDTISFAVQF-------WSKGE 337 (834)
Q Consensus 268 ~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~---~i~~I~f~G~fi~~~~~~m~~ls~ai~f-------ws~g~ 337 (834)
...++++..+..+..-|...--.+...+ .+++||++|+-.+-..+.- .++..++. |..-.
T Consensus 251 ---------~~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~-~l~~~l~~~v~~~~P~~~~~ 320 (348)
T TIGR01175 251 ---------YDPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDA-AIYQRLGLPTEVANPFALMA 320 (348)
T ss_pred ---------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHH-HHHHHHCCCeEecChHHhcc
Confidence 1123444555555544444322222222 4788999998776655443 23333321 11101
Q ss_pred ceE------eeccCCchhhHHHHHhcc
Q 042742 338 AQA------MFLRHEGFLGALGAFMSY 358 (834)
Q Consensus 338 ~~a------~Fl~h~gy~GAlGA~L~~ 358 (834)
..+ +-...+.|..|+|.+|.+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~a~Glalr~ 347 (348)
T TIGR01175 321 LDAKVDAGRLAVDAPALMTALGLALRG 347 (348)
T ss_pred cCccCCHHHHHhhhHHHHHHhhHhhcC
Confidence 110 123557899999998853
No 44
>PRK13321 pantothenate kinase; Reviewed
Probab=95.08 E-value=1.2 Score=47.94 Aligned_cols=97 Identities=21% Similarity=0.243 Sum_probs=56.9
Q ss_pred ccEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCCCCCCCCCCCccc---cccc
Q 042742 186 FPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNRDHRHIGLSAST---IASS 262 (834)
Q Consensus 186 ~PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~~dy~~~GL~~d~---iASs 262 (834)
.|+++|++||-++|=.|+++++ +.||. |-=|--+.+-+|..++. + ||... -.+.
T Consensus 124 ~~~lvid~GTA~T~d~v~~~g~--~~GG~-I~PG~~l~~~aL~~~ta----------~----------Lp~~~~~~~~~~ 180 (256)
T PRK13321 124 RNLIVVDFGTATTFDCVSGKGE--YLGGA-ICPGILISMEALSQKTA----------K----------LPRVEIAKPPSA 180 (256)
T ss_pred CCEEEEECCCceEEEEEcCCCc--EEEEE-ECccHHHHHHHHHhhhh----------c----------CCCCccCCCCCc
Confidence 3899999999999999987554 45555 33333344444432221 1 11100 0012
Q ss_pred ccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEeccc
Q 042742 263 FGKTISDKKELADYRPEDISLSLLRMISYNIGQISYLNALRFGL-KRIFFGGFF 315 (834)
Q Consensus 263 FGK~~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i-~~I~f~G~f 315 (834)
+|+ -+.+-|..+++.+...-|-.+.-...+..+. .+|+.||+.
T Consensus 181 ~g~----------~T~~ai~~G~~~~~~~~i~~~i~~~~~~~~~~~~vi~TGG~ 224 (256)
T PRK13321 181 IGK----------STVSSIQSGLYYGYAGLVEGIVARIKAELGGPPRVIATGGF 224 (256)
T ss_pred CCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCc
Confidence 332 2566777788887777776665555556653 468888864
No 45
>PTZ00288 glucokinase 1; Provisional
Probab=95.07 E-value=1.5 Score=50.57 Aligned_cols=38 Identities=8% Similarity=-0.021 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccc
Q 042742 280 DISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIR 317 (834)
Q Consensus 280 Dia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~ 317 (834)
..|..++...+..+|+.+...+...+...||++|+.+.
T Consensus 298 ~~A~~al~~f~~~LG~~~~nlal~l~P~~VvIgGGi~~ 335 (405)
T PTZ00288 298 VAAVKAMKRHYKYLMRLAAEISMQFLPLTVVLMGDNIV 335 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECccHH
Confidence 46777999999999999999999999999988775433
No 46
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.06 E-value=0.55 Score=54.61 Aligned_cols=156 Identities=13% Similarity=0.087 Sum_probs=92.7
Q ss_pred EEEEEcCCceEEEEEcCC-----------------CceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCC---CC
Q 042742 188 YLLVNIGSGVSMIKVDGD-----------------GKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGD---NR 247 (834)
Q Consensus 188 yLlVNIGSGvSiikV~~~-----------------~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd---~~ 247 (834)
-+++++||+.-+..+... +.|. +.|....||..+.-.+-+.+..+++++.+++.+-. +.
T Consensus 251 ~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~w~~~~~~~~~~~~l~~~~~~~~~~~~~ 329 (481)
T TIGR01312 251 DAMMSLGTSGVVYAVTDKPLPDPAGAVHGFCHALPGGWL-PMGVTLSATSSLEWFRELFGKEDVEALNELAEQSPPGAEG 329 (481)
T ss_pred cEEEEecCceEEEEecCCcccCcccceeeeeeecCCceE-EEeEehhhHHHHHHHHHHhCCCcHHHHHHHHhcCCCCCCC
Confidence 577888887544433221 1122 22334445555554444344356888888876433 21
Q ss_pred ----CC-CCCCCC---cccccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHH--cCCCEEEEeccccc
Q 042742 248 ----DH-RHIGLS---ASTIASSFGKTISDKKELADYRPEDISLSLLRMISYNIGQISYLNALR--FGLKRIFFGGFFIR 317 (834)
Q Consensus 248 ----dy-~~~GL~---~d~iASsFGK~~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~--~~i~~I~f~G~fi~ 317 (834)
.| .....| ++.-++-+|-- .+.++++++++++..|++++-++.-..-+. ..+++|+.+|+..+
T Consensus 330 ~~~~p~~~G~r~P~~~~~~~g~~~gl~-------~~~~~~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~ 402 (481)
T TIGR01312 330 VTFLPYLNGERTPHLDPQARGSFIGLT-------HNTTRADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAK 402 (481)
T ss_pred eEEecccccCCCCCCCCCcceEEECCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 11 111111 22333444411 256899999999999999998886654443 23588999999888
Q ss_pred CcchhHHHHHHHHhhccCCCceEeeccCCchhhHHHHHhccc
Q 042742 318 GHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAFMSYE 359 (834)
Q Consensus 318 ~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAlGA~L~~~ 359 (834)
|+.+ |+.++-.. ++.+...+ ..-.+|+||++.+.
T Consensus 403 s~~~-~Q~~Adv~------g~pv~~~~-~~e~~a~GaA~~a~ 436 (481)
T TIGR01312 403 SPAW-RQMLADIF------GTPVDVPE-GEEGPALGAAILAA 436 (481)
T ss_pred CHHH-HHHHHHHh------CCceeecC-CCcchHHHHHHHHH
Confidence 8765 55666554 55565555 33489999999764
No 47
>PRK13318 pantothenate kinase; Reviewed
Probab=95.06 E-value=1.7 Score=46.91 Aligned_cols=99 Identities=15% Similarity=0.204 Sum_probs=55.7
Q ss_pred cEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCCCCCCCCCCCccccccccccc
Q 042742 187 PYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNRDHRHIGLSASTIASSFGKT 266 (834)
Q Consensus 187 PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~~dy~~~GL~~d~iASsFGK~ 266 (834)
|+++|..||++++=.|+.+++ +.||.-+ =|--+.+-+|..++ .+=.. .. +... .+.+|+
T Consensus 125 ~~ivid~GTA~t~d~v~~~g~--~~GG~I~-PG~~l~~~aL~~~t----------a~Lp~---~~--~~~~--~~~~g~- 183 (258)
T PRK13318 125 PLIVVDFGTATTFDVVSAKGE--YLGGVIA-PGINISADALFQRA----------AKLPR---VE--ITKP--DSVIGK- 183 (258)
T ss_pred CEEEEEcCCceEEEEEcCCCc--EEEEEEC-ccHHHHHHHHHhhh----------hcCCC---Cc--CCCC--CccCCC-
Confidence 899999999999999987554 4455432 23323333332221 11000 00 1000 122332
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEeccc
Q 042742 267 ISDKKELADYRPEDISLSLLRMISYNIGQISYLNALRFGL-KRIFFGGFF 315 (834)
Q Consensus 267 ~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i-~~I~f~G~f 315 (834)
-+.+-|..+++.+...-|-.+.-.+.+.++. -+|++||+.
T Consensus 184 ---------~T~~ai~~G~~~~~~~~i~~~~~~~~~~~~~~~~vi~TGG~ 224 (258)
T PRK13318 184 ---------NTVEAMQSGIYYGYVGLVEGIVKRIKEELGKDPKVIATGGL 224 (258)
T ss_pred ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCc
Confidence 2567778888877777776665555666663 458888876
No 48
>PRK15027 xylulokinase; Provisional
Probab=94.81 E-value=0.65 Score=54.41 Aligned_cols=127 Identities=14% Similarity=0.084 Sum_probs=80.2
Q ss_pred chhHHHHHHhhcCCCCHHHHHHHhcC---CCC----CCCC----CCCCCcccccccccccccccccccCCChhHHHHHHH
Q 042742 218 GGTYWGLGRLLTKCKSFDELLELSQR---GDN----RDHR----HIGLSASTIASSFGKTISDKKELADYRPEDISLSLL 286 (834)
Q Consensus 218 GGTf~GL~~LLtg~~~fdeil~LA~~---Gd~----~dy~----~~GL~~d~iASsFGK~~~~~~~~~~~~~eDia~SLl 286 (834)
+|..+.-.+-..+..++++++++|++ |.+ ..|- ...-.++.-++.||-- .+.+++|++++++
T Consensus 294 ~g~~~~W~~~~~~~~~~~~~~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~arg~f~gl~-------~~~~~~~l~rAvl 366 (484)
T PRK15027 294 AASCLDWAAKLTGLSNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLT-------HQHGPNELARAVL 366 (484)
T ss_pred hHHHHHHHHHHhCCccHHHHHHHHhhCCCCCCceEEecccccCCCcCCCCCcceEEECCC-------CCCCHHHHHHHHH
Confidence 34433333443455568888887754 322 1111 0012345556666632 2468999999999
Q ss_pred HHHHHHHHHHHHHHHHHcC--CCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHHHHHhccc
Q 042742 287 RMISYNIGQISYLNALRFG--LKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAFMSYE 359 (834)
Q Consensus 287 ~mI~~nIgqlA~l~A~~~~--i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAlGA~L~~~ 359 (834)
.-|++++-++--.. +..| +++|+++|+..++... |+.++-+. ++.+.......-.+|+||++.+.
T Consensus 367 Egia~~~~~~~~~l-~~~g~~~~~i~~~GGga~s~~w-~Qi~Adv~------g~pv~~~~~~~~~~a~GaA~lA~ 433 (484)
T PRK15027 367 EGVGYALADGMDVV-HACGIKPQSVTLIGGGARSEYW-RQMLADIS------GQQLDYRTGGDVGPALGAARLAQ 433 (484)
T ss_pred HHHHHHHHHHHHHH-HHcCCCccEEEEeCcccCCHHH-HHHHHHHh------CCeEEeecCCCcchHHHHHHHHH
Confidence 99999988875443 3334 4789999987776654 66676655 66665555555568999999764
No 49
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=93.86 E-value=0.82 Score=49.72 Aligned_cols=168 Identities=16% Similarity=0.157 Sum_probs=105.7
Q ss_pred cccchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccEEEEEcCCceEEEEEcCCCc
Q 042742 128 AYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPYLLVNIGSGVSMIKVDGDGK 207 (834)
Q Consensus 128 A~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSiikV~~~~~ 207 (834)
+.-++.-+.-.+++++.-++-+++|+....+-.+ ..||.+++-=|.-+.++.+++ +.
T Consensus 69 G~~~Ak~La~~~~~Pli~v~~l~a~a~~~~~~~~----------------------~~~P~~~~isa~~~~vy~~~~-~~ 125 (268)
T PF00814_consen 69 GLSFAKGLALALNIPLIGVSHLEAHALSARLSEG----------------------LKFPLVLLISAGHTEVYLAEG-GD 125 (268)
T ss_dssp HHHHHHHHHHHTT--EEEEEHHHHHHHHHHHHHT----------------------EESEEEEEEECSTCEEEEEET-TE
T ss_pred HHHHHHHHHHHhCCCeEeeccHHHHHHhHhhhcc----------------------ccCceEEEEECCCccEEEEEe-eE
Confidence 3455666777889999999999999987664421 135623332344444666666 78
Q ss_pred eEEeccc--ccCchhHHHHHHhh-cCCCCHHHHHHHhcCCCCCCCCCCCCCccccc--ccccccccccccccCCChhHHH
Q 042742 208 FERVSGT--NVGGGTYWGLGRLL-TKCKSFDELLELSQRGDNRDHRHIGLSASTIA--SSFGKTISDKKELADYRPEDIS 282 (834)
Q Consensus 208 f~RvgGt--siGGGTf~GL~~LL-tg~~~fdeil~LA~~Gd~~dy~~~GL~~d~iA--SsFGK~~~~~~~~~~~~~eDia 282 (834)
|+.+|+| ..-|=.+.-+..+| .....=-++-++|.+| . .|. +|..... -||--... .......++|||
T Consensus 126 ~~~~~~t~d~~~ge~~dk~~~~l~l~~~~g~~le~la~~~-~-~~~---~p~~~~~~~~sFsG~~t--~~~~~i~~~~iA 198 (268)
T PF00814_consen 126 YEILGETLDDAIGEAFDKVARLLGLPYPGGPALEKLASEG-E-AFK---FPRPLKNCDFSFSGLKT--AVYRLIEKADIA 198 (268)
T ss_dssp EEEECCBSSSCHHHHHHHHHHHTT--SSHHHHHHHHHCT--S----------SEETTEEEEHHHHH--HHHHHHHTHHHH
T ss_pred EEeeccccccccHHHHhhHHHHhccccccCcHHHHHHHhC-C-cce---eccceeeeeEEEEcccH--HHHHHhhhhHHH
Confidence 9999988 35667777777777 2222223667788888 2 221 2222211 22211100 000011229999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHH
Q 042742 283 LSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDT 325 (834)
Q Consensus 283 ~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ 325 (834)
+++...+...+.+.+..+.+..+.+.++++|+...|..+....
T Consensus 199 ~s~q~~~~~~l~~~~~~a~~~~~~~~lv~~GGVaaN~~lr~~l 241 (268)
T PF00814_consen 199 ASFQEAIADHLAKKAPRALEKPRAKSLVVSGGVAANKYLREGL 241 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSEEEEESGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876643
No 50
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=92.27 E-value=1.7 Score=51.20 Aligned_cols=113 Identities=13% Similarity=0.054 Sum_probs=73.8
Q ss_pred CCHHHHHHHhcC--CCC----CCCC----CCCCCcccccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 042742 232 KSFDELLELSQR--GDN----RDHR----HIGLSASTIASSFGKTISDKKELADYRPEDISLSLLRMISYNIGQISYLNA 301 (834)
Q Consensus 232 ~~fdeil~LA~~--Gd~----~dy~----~~GL~~d~iASsFGK~~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A 301 (834)
.+++++.++|.+ |.+ ..|- .....+++-++-+|-- .+.+++|++++++.-|++++-+.--...
T Consensus 328 ~~~~~~~~~a~~~~g~~gl~~~P~l~G~r~P~~~~~arg~~~Gl~-------~~~~~~~i~rAvlEgia~~~r~~~~~l~ 400 (504)
T PTZ00294 328 SHPSEIEKLARSVKDTGGVVFVPAFSGLFAPYWRPDARGTIVGMT-------LKTTRAHIVRAALEAIALQTNDVIESME 400 (504)
T ss_pred CCHHHHHHHHHhCCCCCCEEEeCcccCCCCCCCCCCCCEEEEccC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788777754 322 1111 0012344455555532 2458999999999999999977755444
Q ss_pred HHcC--CCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHHHHHhccc
Q 042742 302 LRFG--LKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAFMSYE 359 (834)
Q Consensus 302 ~~~~--i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAlGA~L~~~ 359 (834)
+..| +++|+.+|+..++... ++.++-.+ +..+..++.++ .+|+||++.+.
T Consensus 401 ~~~g~~~~~i~~~GG~a~s~~w-~Qi~Adv~------g~pV~~~~~~e-~~alGaAl~aa 452 (504)
T PTZ00294 401 KDAGIELNSLRVDGGLTKNKLL-MQFQADIL------GKDIVVPEMAE-TTALGAALLAG 452 (504)
T ss_pred HhhCCCcceEEEecccccCHHH-HHHHHHHh------CCceEecCccc-chHHHHHHHHH
Confidence 3334 5789999999887764 55666555 66776667655 79999999764
No 51
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=91.51 E-value=11 Score=42.19 Aligned_cols=149 Identities=20% Similarity=0.161 Sum_probs=78.0
Q ss_pred HHhCCCcccch-hhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccEEEEEcCCceEEEEEcCCCceEEecccc
Q 042742 137 ERLGVSLDKED-EMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPYLLVNIGSGVSMIKVDGDGKFERVSGTN 215 (834)
Q Consensus 137 ~~lgi~~~k~d-Em~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSiikV~~~~~f~RvgGts 215 (834)
+..|+++..+| +.-|+.+-..++....+. .....++++|+||...+-+.+-.+++..-.---.
T Consensus 146 ~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~----------------~~~~~~~~lvdiG~~~t~~~i~~~g~~~f~R~i~ 209 (340)
T PF11104_consen 146 EEAGLKPVAVDVEAFALARLFEFLEPQLPD----------------EEDAETVALVDIGASSTTVIIFQNGKPIFSRSIP 209 (340)
T ss_dssp HHTT-EEEEEEEHHHHGGGGGHHHHHTST--------------------T-EEEEEEE-SS-EEEEEEETTEEEEEEEES
T ss_pred HHcCCceEEEeehHHHHHHHHHHHHHhCCc----------------ccccceEEEEEecCCeEEEEEEECCEEEEEEEEe
Confidence 45688766664 344555555554332110 1123468999999877744443335555555568
Q ss_pred cCchhHHHHHHhhcCCCCHHHHHHHhcCCCCCCCCCCCCCcccccccccccccccccccCCChhHHHHHHHHHHHHHHHH
Q 042742 216 VGGGTYWGLGRLLTKCKSFDELLELSQRGDNRDHRHIGLSASTIASSFGKTISDKKELADYRPEDISLSLLRMISYNIGQ 295 (834)
Q Consensus 216 iGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~~dy~~~GL~~d~iASsFGK~~~~~~~~~~~~~eDia~SLl~mI~~nIgq 295 (834)
+||..+-....--.+. ++++.-++-..++ ++. -...+..+..+.-++..|..
T Consensus 210 ~G~~~l~~~i~~~~~i-~~~~Ae~~k~~~~--------l~~-------------------~~~~~~l~~~~~~l~~EI~r 261 (340)
T PF11104_consen 210 IGGNDLTEAIARELGI-DFEEAEELKRSGG--------LPE-------------------EYDQDALRPFLEELAREIRR 261 (340)
T ss_dssp -SHHHHHHHHHHHTT---HHHHHHHHHHT---------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHhcCC-CHHHHHHHHhcCC--------CCc-------------------chHHHHHHHHHHHHHHHHHH
Confidence 9999988766666674 5877765433322 211 12345666666667666666
Q ss_pred HHHHHHH---HcCCCEEEEecccccCcchhHHHHHHHH
Q 042742 296 ISYLNAL---RFGLKRIFFGGFFIRGHAYTMDTISFAV 330 (834)
Q Consensus 296 lA~l~A~---~~~i~~I~f~G~fi~~~~~~m~~ls~ai 330 (834)
.--.+.. ...+++||++|+-.+-+.+.- .++..+
T Consensus 262 sl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~-~l~~~l 298 (340)
T PF11104_consen 262 SLDFYQSQSGGESIERIYLSGGGARLPGLAE-YLSEEL 298 (340)
T ss_dssp HHHHHHHH------SEEEEESGGGGSTTHHH-HHHHHH
T ss_pred HHHHHHhcCCCCCCCEEEEECCccchhhHHH-HHHHHH
Confidence 5433333 235799999998877766544 344443
No 52
>PLN02669 xylulokinase
Probab=91.48 E-value=3 Score=50.09 Aligned_cols=77 Identities=12% Similarity=0.106 Sum_probs=55.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHHHH
Q 042742 275 DYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGA 354 (834)
Q Consensus 275 ~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAlGA 354 (834)
+.+++|++|+++.-+++.+-...-..-....+++|+++|+-.+|.. -++.++-.+ +..+.-++.++ .+|+||
T Consensus 415 ~~~~~~~~RAvlEg~a~~~r~~~~~l~~~~~~~~i~~~GGgs~s~~-w~Qi~ADVl------g~pV~~~~~~e-a~alGA 486 (556)
T PLN02669 415 EFDPPSEVRAIIEGQFLSMRAHAERFGMPVPPKRIIATGGASANQS-ILKLIASIF------GCDVYTVQRPD-SASLGA 486 (556)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcChhcCHH-HHHHHHHHc------CCCeEecCCCC-chHHHH
Confidence 3689999999999999988766443321123678999998876665 455666555 45666666665 779999
Q ss_pred Hhccc
Q 042742 355 FMSYE 359 (834)
Q Consensus 355 ~L~~~ 359 (834)
++.+.
T Consensus 487 A~~A~ 491 (556)
T PLN02669 487 ALRAA 491 (556)
T ss_pred HHHHH
Confidence 99764
No 53
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=91.34 E-value=4.4 Score=47.84 Aligned_cols=77 Identities=18% Similarity=0.123 Sum_probs=56.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHH
Q 042742 275 DYRPEDISLSLLRMISYNIGQISYLNALRFG--LKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGAL 352 (834)
Q Consensus 275 ~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~--i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAl 352 (834)
..+++|++++++.-|++.+-+......+..+ +++|+.+|+..+|+. -++.++-.. +..+......+ .+|+
T Consensus 369 ~~~~~~l~rAvlEgia~~~~~~~~~~~~~~g~~~~~i~~~GGga~s~~-w~Qi~Adv~------g~pv~~~~~~e-~~a~ 440 (505)
T TIGR01314 369 SHKKEHMIRAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEV-WRQMMSDIF------EQEIVVPESYE-SSCL 440 (505)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCHH-HHHHHHHHc------CCeeEecCCCC-cchH
Confidence 4579999999999999998876444433233 688999999887765 455666555 56666656554 8899
Q ss_pred HHHhccc
Q 042742 353 GAFMSYE 359 (834)
Q Consensus 353 GA~L~~~ 359 (834)
||++.+.
T Consensus 441 GaA~la~ 447 (505)
T TIGR01314 441 GACILGL 447 (505)
T ss_pred HHHHHHH
Confidence 9999763
No 54
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=91.19 E-value=5 Score=47.82 Aligned_cols=76 Identities=12% Similarity=0.069 Sum_probs=55.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEeccc-ccCcchhHHHHHHHHhhccCCCceEeeccCCchhhH
Q 042742 275 DYRPEDISLSLLRMISYNIGQISYLNALRFG--LKRIFFGGFF-IRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGA 351 (834)
Q Consensus 275 ~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~--i~~I~f~G~f-i~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GA 351 (834)
+.+++|++++++.-|+++.-++--..-+ .| +++|+++|+. .++. +-|+.++-.. ++.+..+++.+ .+|
T Consensus 404 ~~~~~~~~RAvlEgia~~~~~~l~~l~~-~g~~~~~i~~~GGg~a~s~-~w~Qi~Adv~------g~pV~~~~~~e-~~a 474 (536)
T TIGR01234 404 ATDAPLLYRALIEATAFGTRMIMETFTD-SGVPVEELMAAGGIARKNP-VIMQIYADVT------NRPLQIVASDQ-APA 474 (536)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcceEEEeCCccccCH-HHHHHHHHhh------CCeeEeccCCc-chh
Confidence 4689999999999999988887443332 34 5789999998 5665 4555666554 66776667655 779
Q ss_pred HHHHhccc
Q 042742 352 LGAFMSYE 359 (834)
Q Consensus 352 lGA~L~~~ 359 (834)
+||++.+.
T Consensus 475 ~GaA~lA~ 482 (536)
T TIGR01234 475 LGAAIFAA 482 (536)
T ss_pred HHHHHHHH
Confidence 99998764
No 55
>PRK13320 pantothenate kinase; Reviewed
Probab=90.75 E-value=19 Score=38.77 Aligned_cols=101 Identities=13% Similarity=0.028 Sum_probs=57.6
Q ss_pred CccEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCCCCCCCCCCCccccccccc
Q 042742 185 LFPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNRDHRHIGLSASTIASSFG 264 (834)
Q Consensus 185 ~~PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~~dy~~~GL~~d~iASsFG 264 (834)
-.|+++|+.||.+++=.|+.+++ +.||.-+= |--+.+-+|.-+ +.+=...+ + +.....+|
T Consensus 113 ~~~~lVID~GTA~Tid~v~~~g~--~~GG~I~P-G~~l~~~aL~~~----------Ta~Lp~~~-----~--~~~~~~~g 172 (244)
T PRK13320 113 GKNVLAIDAGTAITYDVLDSEGV--YLGGLISP-GLEMRFKALHEF----------TARLPLVT-----I--EGPIPLIG 172 (244)
T ss_pred CCCEEEEEcCCceEEEEEcCCCc--EEEEEEch-hHHHHHHHHHHh----------hccCCcCc-----c--CCCCCcCC
Confidence 35899999999999999987554 44555332 333333333222 11100000 0 00011123
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccc
Q 042742 265 KTISDKKELADYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFF 315 (834)
Q Consensus 265 K~~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~f 315 (834)
.-+.+-|..+++.+...-|-.+.-...+.++--+|+.||+.
T Consensus 173 ----------~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~~vi~TGG~ 213 (244)
T PRK13320 173 ----------RSTEECIRSGVVWGCVAEIEGLIEAYKSKLPELLVILTGGD 213 (244)
T ss_pred ----------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 23567788888888777776655555666663478888876
No 56
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=90.14 E-value=7.5 Score=45.75 Aligned_cols=77 Identities=13% Similarity=0.093 Sum_probs=57.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHH
Q 042742 275 DYRPEDISLSLLRMISYNIGQISYLNALRFG--LKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGAL 352 (834)
Q Consensus 275 ~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~--i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAl 352 (834)
..+++|++++++.-|++++-+..-..-+..| +++|..+|+..++.. -++.++-.. +..+...++++ .+|+
T Consensus 367 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~-w~Qi~ADv~------g~pv~~~~~~e-~~al 438 (493)
T TIGR01311 367 GTTKAHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNL-LMQFQADIL------GVPVVRPKVTE-TTAL 438 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHH-HHHHHHHhc------CCeeEecCCCc-chHH
Confidence 4579999999999999999888765544324 578999999887775 455666554 56666666554 8899
Q ss_pred HHHhccc
Q 042742 353 GAFMSYE 359 (834)
Q Consensus 353 GA~L~~~ 359 (834)
||++.+.
T Consensus 439 GaA~~a~ 445 (493)
T TIGR01311 439 GAAYAAG 445 (493)
T ss_pred HHHHHHH
Confidence 9998764
No 57
>PRK04123 ribulokinase; Provisional
Probab=90.03 E-value=6.2 Score=47.09 Aligned_cols=76 Identities=14% Similarity=0.120 Sum_probs=54.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEeccc-ccCcchhHHHHHHHHhhccCCCceEeeccCCchhhH
Q 042742 275 DYRPEDISLSLLRMISYNIGQISYLNALRFG--LKRIFFGGFF-IRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGA 351 (834)
Q Consensus 275 ~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~--i~~I~f~G~f-i~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GA 351 (834)
..+++|++++++.-|++++-++.-...+ .+ +++|+.+|+. .+|.. -++.++-.. +..+.-.+..+ .+|
T Consensus 407 ~~~~~~l~RAvlEgia~~~~~~~e~l~~-~g~~~~~i~~~GGg~s~s~~-w~Qi~ADv~------g~pV~~~~~~e-~~a 477 (548)
T PRK04123 407 GTDAPDIYRALIEATAFGTRAIMECFED-QGVPVEEVIAAGGIARKNPV-LMQIYADVL------NRPIQVVASDQ-CPA 477 (548)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcceEEEeCCCcccCHH-HHHHHHHhc------CCceEecCccc-cch
Confidence 4578999999999999999887554433 44 5789999988 66665 444566554 55555555544 889
Q ss_pred HHHHhccc
Q 042742 352 LGAFMSYE 359 (834)
Q Consensus 352 lGA~L~~~ 359 (834)
+||++.+.
T Consensus 478 lGaA~lA~ 485 (548)
T PRK04123 478 LGAAIFAA 485 (548)
T ss_pred HHHHHHHH
Confidence 99999763
No 58
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=89.76 E-value=4.8 Score=43.69 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEec
Q 042742 281 ISLSLLRMISYNIGQISYLNALRFGLKRIFFGG 313 (834)
Q Consensus 281 ia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G 313 (834)
+-..+|..++.+|-.. |++||+++||-+|
T Consensus 258 ~~~~~l~~l~e~I~~~----a~r~gL~~Vv~~G 286 (330)
T COG1548 258 AYNALLELLAENIEEK----AKRYGLNTVVATG 286 (330)
T ss_pred HHHHHHHHHHHHHHHH----HHHcChhhhhhcc
Confidence 3455666777777666 8899999999987
No 59
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=89.51 E-value=3.1 Score=47.22 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEecccccCcchhHHHHHHHHhhc
Q 042742 280 DISLSLLRMISYNIGQISYLNALRF--GLKRIFFGGFFIRGHAYTMDTISFAVQFW 333 (834)
Q Consensus 280 Dia~SLl~mI~~nIgqlA~l~A~~~--~i~~I~f~G~fi~~~~~~m~~ls~ai~fw 333 (834)
..|+.++.+.++.++.-...++-.. +.+.|+|||+...+..+ +..+...+.|.
T Consensus 266 ~~A~~a~d~~~~~la~~Ia~l~~~l~g~pD~IV~gGGI~e~~~l-~~~I~~~l~~~ 320 (351)
T TIGR02707 266 EKAKLILDAMAYQIAKEIGKMAVVLKGKVDAIVLTGGLAYSKYF-VSEIIKRVSFI 320 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcchhhcCHHH-HHHHHHHHHhh
Confidence 4688899999999986555555555 79999999998887665 45565566553
No 60
>PRK10331 L-fuculokinase; Provisional
Probab=88.77 E-value=5 Score=46.92 Aligned_cols=112 Identities=13% Similarity=0.020 Sum_probs=71.0
Q ss_pred CCHHHHHHHhcCCCCCC----CCCCCCCcccccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHH--cC
Q 042742 232 KSFDELLELSQRGDNRD----HRHIGLSASTIASSFGKTISDKKELADYRPEDISLSLLRMISYNIGQISYLNALR--FG 305 (834)
Q Consensus 232 ~~fdeil~LA~~Gd~~d----y~~~GL~~d~iASsFGK~~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~--~~ 305 (834)
..|++|.++|.+-..+. +.. -+.+..-++.||=- .+.+++|++++++.-|++++-++--..-+. ..
T Consensus 318 ~~y~~l~~~a~~~~~g~~gl~~~p-~~~g~~rg~~~Gl~-------~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~~~~ 389 (470)
T PRK10331 318 TPYQTMIEEARAIPPGADGVKMQC-DLLACQNAGWQGVT-------LNTTRGHFYRAALEGLTAQLKRNLQVLEKIGHFK 389 (470)
T ss_pred chHHHHHHHHhcCCCCCCceEecc-cccccCceeEECCC-------CCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45788888875432211 100 02222233444411 246799999999999999998765544333 24
Q ss_pred CCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHHHHHhccc
Q 042742 306 LKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAFMSYE 359 (834)
Q Consensus 306 i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAlGA~L~~~ 359 (834)
+++|+.+|+..++... |+.++-.. +..+...+..+ .+|+||++.+.
T Consensus 390 ~~~i~~~GGga~s~~w-~Qi~Advl------g~pV~~~~~~e-~~a~GaA~la~ 435 (470)
T PRK10331 390 ASELLLVGGGSRNALW-NQIKANML------DIPIKVLDDAE-TTVAGAAMFGW 435 (470)
T ss_pred CceEEEEcccccCHHH-HHHHHHhc------CCeeEecCccc-chHHHHHHHHH
Confidence 7889999988877754 55666554 56665656544 88999998764
No 61
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=88.61 E-value=1 Score=40.53 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=16.6
Q ss_pred eEEEEeccceeEEEEEeec
Q 042742 42 HLALDIGGSLIKLVYFSRH 60 (834)
Q Consensus 42 ~~giDIGGSL~Kivy~~~~ 60 (834)
.+|||+|||-+|++.+++.
T Consensus 3 ilgiD~Ggt~i~~a~~d~~ 21 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDET 21 (99)
T ss_pred EEEEccCCCeEEEEEECCC
Confidence 5899999999999998743
No 62
>PLN02295 glycerol kinase
Probab=88.56 E-value=9 Score=45.37 Aligned_cols=77 Identities=13% Similarity=0.031 Sum_probs=55.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHH-------cCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCc
Q 042742 275 DYRPEDISLSLLRMISYNIGQISYLNALR-------FGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEG 347 (834)
Q Consensus 275 ~~~~eDia~SLl~mI~~nIgqlA~l~A~~-------~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~g 347 (834)
..+++|++++++.-|++++-++--..-+. ..+++|..+|+..+++.+ ++.++-.. +..+..+++++
T Consensus 375 ~~~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w-~Qi~ADv~------g~pV~~~~~~e 447 (512)
T PLN02295 375 FTNKAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLL-MQIQADLL------GSPVVRPADIE 447 (512)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHH-HHHHHHhc------CCceEecCccc
Confidence 45899999999999999997765433322 136789888888777754 55666554 66666666554
Q ss_pred hhhHHHHHhccc
Q 042742 348 FLGALGAFMSYE 359 (834)
Q Consensus 348 y~GAlGA~L~~~ 359 (834)
.+|+||++.+.
T Consensus 448 -~~alGaA~~A~ 458 (512)
T PLN02295 448 -TTALGAAYAAG 458 (512)
T ss_pred -cHHHHHHHHHH
Confidence 88999998753
No 63
>PRK00976 hypothetical protein; Provisional
Probab=88.35 E-value=8.1 Score=43.41 Aligned_cols=72 Identities=10% Similarity=-0.061 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHHHHHhccc
Q 042742 281 ISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAFMSYE 359 (834)
Q Consensus 281 ia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAlGA~L~~~ 359 (834)
.|+-.+...+..++.-..-..-..+.+.|+++|++.+...+ ......-++..+ . ....++..|++||++.+.
T Consensus 239 ~A~~aid~~~~~LA~~IAnLi~llDPe~IVLGGGVS~~~e~--~L~~~I~e~l~~---~--~a~LG~dAGaiGAA~iA~ 310 (326)
T PRK00976 239 KAKLAIDTLALFVAMEIASLLLLNPEDNVVLAGSVGEMDEP--DVSERIKELLDK---K--VLVLGKESAAIGLALIAR 310 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCccccCchh--HHHHHHHHHhcc---c--ccccCCchHHHHHHHHHH
Confidence 45666666666666666655667788889999999887733 122211112212 1 467789999999998764
No 64
>PRK00047 glpK glycerol kinase; Provisional
Probab=87.97 E-value=14 Score=43.46 Aligned_cols=77 Identities=18% Similarity=0.054 Sum_probs=57.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHH
Q 042742 275 DYRPEDISLSLLRMISYNIGQISYLNALRFG--LKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGAL 352 (834)
Q Consensus 275 ~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~--i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAl 352 (834)
..+++|++++++.-|++++-+.--...+..| +++|..+|+..++.. -++.++-.. +..+..++.++ .+|+
T Consensus 371 ~~~~~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~-w~Qi~ADvl------g~pV~~~~~~e-~~a~ 442 (498)
T PRK00047 371 GTTKEHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNF-LMQFQADIL------GVPVERPVVAE-TTAL 442 (498)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHH-HHHHHHHhh------CCeeEecCccc-chHH
Confidence 4578999999999999999987655544334 678999998777665 455666555 66676666555 8899
Q ss_pred HHHhccc
Q 042742 353 GAFMSYE 359 (834)
Q Consensus 353 GA~L~~~ 359 (834)
||++.+.
T Consensus 443 GaA~~A~ 449 (498)
T PRK00047 443 GAAYLAG 449 (498)
T ss_pred HHHHHHh
Confidence 9999764
No 65
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=87.47 E-value=4 Score=48.31 Aligned_cols=77 Identities=16% Similarity=0.092 Sum_probs=61.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHH-HHHHHH-cCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHH
Q 042742 275 DYRPEDISLSLLRMISYNIGQIS-YLNALR-FGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGAL 352 (834)
Q Consensus 275 ~~~~eDia~SLl~mI~~nIgqlA-~l~A~~-~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAl 352 (834)
+.++++||++++..|++.+-+|- .+.... +.++++.+.|+..+|+.+ |+.++-.+ ++.+.+++..+= +++
T Consensus 382 ~ts~~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll-~Q~~ADi~------g~pv~~p~~~e~-~~~ 453 (516)
T KOG2517|consen 382 DTSKEHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLL-MQLQADIL------GLPVVRPQDVEA-VAL 453 (516)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHH-HHHHHHHh------CCccccccchhH-HHH
Confidence 67899999999999999998872 333333 678999999999998865 55666555 588888888777 999
Q ss_pred HHHhccc
Q 042742 353 GAFMSYE 359 (834)
Q Consensus 353 GA~L~~~ 359 (834)
||++.+.
T Consensus 454 GaA~l~~ 460 (516)
T KOG2517|consen 454 GAAMLAG 460 (516)
T ss_pred HHHHHHH
Confidence 9998763
No 66
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=86.95 E-value=43 Score=36.01 Aligned_cols=102 Identities=17% Similarity=0.116 Sum_probs=57.0
Q ss_pred ccEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCCCCCCCCCCCcccccccccc
Q 042742 186 FPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNRDHRHIGLSASTIASSFGK 265 (834)
Q Consensus 186 ~PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~~dy~~~GL~~d~iASsFGK 265 (834)
.|.++|+.||-+++=.|+.+++ +.||.-+ =|--+.+-+|..++. +=.. +.+. .-.+.+|+
T Consensus 116 ~~~lViD~GTA~Tid~v~~~g~--~~GG~I~-PG~~l~~~aL~~~Ta----------~Lp~-----v~~~--~~~~~~g~ 175 (243)
T TIGR00671 116 FNVVVVDAGTALTIDLVDQEGK--FLGGAIA-PGLGISLHALKDRAA----------ALPK-----FEIA--RPDEVLGK 175 (243)
T ss_pred CCEEEEEcCCceEEEEEcCCCe--EEEEEEC-ccHHHHHHHHHhhHh----------cCCC-----CCcC--CCCccCCC
Confidence 3899999999999999987554 4555533 333333333322211 1000 0010 00122332
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEeccccc
Q 042742 266 TISDKKELADYRPEDISLSLLRMISYNIGQISYLNALRFGL-KRIFFGGFFIR 317 (834)
Q Consensus 266 ~~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i-~~I~f~G~fi~ 317 (834)
-+.+-|..+++.+...-|-.+.-...+.++- -+|++||+..+
T Consensus 176 ----------~T~~ai~sG~~~g~~~~i~~~i~~~~~~~~~~~~vi~TGG~a~ 218 (243)
T TIGR00671 176 ----------STREAVQSGAVYGVLGLIQGLLKDWKKYFKRKFAVVITGGDGK 218 (243)
T ss_pred ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCchH
Confidence 2567788888887777776665545555552 46888887644
No 67
>PRK13331 pantothenate kinase; Reviewed
Probab=85.86 E-value=57 Score=35.47 Aligned_cols=101 Identities=20% Similarity=0.260 Sum_probs=54.2
Q ss_pred ccEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCCCCCCCCCCCcccccccccc
Q 042742 186 FPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNRDHRHIGLSASTIASSFGK 265 (834)
Q Consensus 186 ~PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~~dy~~~GL~~d~iASsFGK 265 (834)
.|.|+|..||-+++=.|+.+++ +.||.-+ =|+... .+-+.+-+++=.. +.+.. .-.+.+|+
T Consensus 113 ~~~iVID~GTA~T~D~V~~~g~--~~GG~I~-----PG~~l~------~~AL~~~Ta~Lp~-----v~~~~-~~~~~iG~ 173 (251)
T PRK13331 113 FPCLVIDAGTALTFTGVDSDRT--LVGGAIL-----PGLGLQ------LRSLADKTAALPQ-----VELPP-PLPPRWAT 173 (251)
T ss_pred CCEEEEECCCceEEEEEcCCCc--EEEEEEC-----ccHHHH------HHHHHHhhhcCCC-----Ccccc-CCCcccCC
Confidence 5799999999999999987554 3455432 222211 1122221222111 00110 01133453
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccc
Q 042742 266 TISDKKELADYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFF 315 (834)
Q Consensus 266 ~~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~f 315 (834)
-+.+-|-.+++.+..--|-.+.-...+..+--+|+.||+.
T Consensus 174 ----------nT~~ai~sGi~~g~~g~i~~~i~~~~~~~~~~~vi~TGG~ 213 (251)
T PRK13331 174 ----------NTQEAIQSGVIYTILAGLRDFIEDWLSLFPDGKIVLTGGD 213 (251)
T ss_pred ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 2456677777777666666555444555554468888875
No 68
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=84.24 E-value=3.7 Score=45.65 Aligned_cols=52 Identities=21% Similarity=0.405 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHhcc--cccCcEEEeCCcccc--chhHHHHHhCCCcccchhhHHHH
Q 042742 102 TKISECLDFIHSKQ--LHRGGIHATGGGAYK--FADLFKERLGVSLDKEDEMDCLV 153 (834)
Q Consensus 102 ~~i~~~l~fi~~~~--~~~~~i~~TGGGA~k--~~~~~~~~lgi~~~k~dEm~cli 153 (834)
++|..+++|..... ....+|.+|||||.- +.+.|.+.+|+++...+=+..+.
T Consensus 265 ~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~ 320 (348)
T TIGR01175 265 DEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMA 320 (348)
T ss_pred HHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcc
Confidence 45666777765432 123459999999764 88899999999998888766544
No 69
>PRK12440 acetate kinase; Reviewed
Probab=83.84 E-value=12 Score=43.11 Aligned_cols=138 Identities=14% Similarity=0.119 Sum_probs=72.7
Q ss_pred cEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHH-hhcCCCCHHHHHHHhcCCCC------CCCCCCCCCcccc
Q 042742 187 PYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGR-LLTKCKSFDELLELSQRGDN------RDHRHIGLSASTI 259 (834)
Q Consensus 187 PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~-LLtg~~~fdeil~LA~~Gd~------~dy~~~GL~~d~i 259 (834)
-.|+.-+|+|.|+-.+.++..+. |++|-+-|-||.. --+|.-|..=+.-+.++|-. .-+.+-||-+-+=
T Consensus 202 ~~Iv~HLG~G~Si~Ai~~GksvD----tsmG~tPl~GL~MgtRsG~idp~vv~~l~~~~~s~~e~~~~Ln~~SGLlg~sG 277 (397)
T PRK12440 202 SFISVHLGNGASVCAIKNGQSVD----TSMGFTPLSGLMMGTRCGDLDPGIIEFLLKKGWSQEKVFNSLNKKSGFLGVSG 277 (397)
T ss_pred CEEEEEeCCCcEeeeeeCCEEEE----cCCCCCCCCCCCCCCcCCCCCHHHHHHHHHcCCCHHHHHHHHhccccceEecC
Confidence 57888899999999988643322 4555555554432 11333344422223333211 0011223211100
Q ss_pred -cccccccccccccccCCChhHHHHHHHHHHHHHHH-HHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhc
Q 042742 260 -ASSFGKTISDKKELADYRPEDISLSLLRMISYNIG-QISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFW 333 (834)
Q Consensus 260 -ASsFGK~~~~~~~~~~~~~eDia~SLl~mI~~nIg-qlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fw 333 (834)
-+.|-.+..... ....-|+-.+.|.++.|. +++.+.|...+++-|+|||+.-.|.+.....+...+.|+
T Consensus 278 ~s~D~R~l~~~~~-----~gd~~A~lA~d~f~yri~k~Ig~~~a~l~gvDaiVFTgGIGen~~~vr~~i~~~l~~l 348 (397)
T PRK12440 278 LTSDARGILEAME-----EGHEGATLAFEVFTYRVAKYIASYLAALDSLDGIIFTGGIGENSLPIRREILKNLKLL 348 (397)
T ss_pred CCCCHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCccccCcHHHHHHHHhhhhhh
Confidence 112222211000 002245666777777765 567777788899999999999888885555555444443
No 70
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=83.53 E-value=5.2 Score=46.92 Aligned_cols=32 Identities=31% Similarity=0.438 Sum_probs=22.4
Q ss_pred cEEEEEcCCceEEEEEcCCCceEEecccccCc
Q 042742 187 PYLLVNIGSGVSMIKVDGDGKFERVSGTNVGG 218 (834)
Q Consensus 187 PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGG 218 (834)
..++|+||.|++=+.|-.+++....+--.+||
T Consensus 147 gVa~IDIGgGTT~iaVf~~G~l~~T~~l~vGG 178 (475)
T PRK10719 147 RVLNIDIGGGTANYALFDAGKVIDTACLNVGG 178 (475)
T ss_pred ceEEEEeCCCceEEEEEECCEEEEEEEEeccc
Confidence 47999999999955555445666655556665
No 71
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=82.80 E-value=3.5 Score=51.01 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=54.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeecc
Q 042742 275 DYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLR 344 (834)
Q Consensus 275 ~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~ 344 (834)
+.+++|||+++..+++..|.+++...++.+++++|+++|+...|..+...+.. .+ .+.+++++|.+
T Consensus 628 g~~~~~IAa~fh~tla~~L~~~a~~~~~~~g~~~VvLSGGVfqN~~L~~~L~~-~L---~~~g~~v~~p~ 693 (711)
T TIGR00143 628 GEDRSKIAHIAHKFVASGLVEIATAIAVPFGIHKIVISGGVFYNRLLLERLAK-YL---KGLGFQFLFHR 693 (711)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccHHHHHHHHHHHHH-HH---HhCCCEEEccC
Confidence 46789999999999999999999999999999999999999999987765433 22 23457777654
No 72
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=81.60 E-value=3.9 Score=49.72 Aligned_cols=67 Identities=12% Similarity=0.264 Sum_probs=54.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccC
Q 042742 275 DYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRH 345 (834)
Q Consensus 275 ~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h 345 (834)
+.++++||....+.+++-++.++...|+..|+++|+++|+...|..++.....+ -.+.+.+.+|.++
T Consensus 663 ~~~~~~iA~~fh~~la~~~~e~~~~~a~~~gi~~V~lsGGVf~N~~l~~~~~~~----l~~~~f~~~~~~~ 729 (750)
T COG0068 663 KDEPEKIATKFHNALAEGFAELAVELAKKYGINKVVLSGGVFQNRLLLERLAKY----LKKEGFRFLFHQE 729 (750)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccEEEeeCCeeecHHHHHHHHHH----HHhcCceEeeecc
Confidence 578899999999999999999999999999999999999999999877653332 2244566666443
No 73
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=81.19 E-value=18 Score=36.03 Aligned_cols=52 Identities=21% Similarity=0.385 Sum_probs=38.4
Q ss_pred cccchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccEEEEEcCCceEE
Q 042742 128 AYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPYLLVNIGSGVSM 199 (834)
Q Consensus 128 A~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSi 199 (834)
...+.+.|++.+++++.-.+...|...|-.++-.. ...--++.+.+|+|+..
T Consensus 80 ~~~l~~~l~~~~~~pv~i~Nd~~~~a~ae~~~~~~--------------------~~~~~~~~l~ig~GiG~ 131 (179)
T PF00480_consen 80 NIPLKEELEERFGVPVIIENDANAAALAEYWFGAA--------------------KDCDNFLYLYIGTGIGA 131 (179)
T ss_dssp TCEHHHHHHHHHTSEEEEEEHHHHHHHHHHHHSTT--------------------TTTSSEEEEEESSSEEE
T ss_pred cCCHHHHhhcccceEEEEecCCCcceeehhhcCcc--------------------CCcceEEEEEeecCCCc
Confidence 34566778999999999999999999886655321 12234788888888864
No 74
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=78.95 E-value=32 Score=36.82 Aligned_cols=54 Identities=9% Similarity=0.133 Sum_probs=38.4
Q ss_pred ccchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccEEEEEcCCceEEEEE
Q 042742 129 YKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPYLLVNIGSGVSMIKV 202 (834)
Q Consensus 129 ~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvSiikV 202 (834)
..+.+.|++.+++++.-.++..|.+.|-.+.-. ....--++.+.+|+|+-.=.|
T Consensus 86 ~~l~~~l~~~~~~pV~leNDanaaAlaE~~~g~--------------------~~~~~~~v~i~lgtGiG~giv 139 (256)
T PRK13311 86 QPLQADLSRLIQREVRIDNDANCFALSEAWDPE--------------------FRTYPTVLGLILGTGVGGGLI 139 (256)
T ss_pred CChHHHHHHHHCCCEEEEchhhHHHHHHHHhcC--------------------CCCCCcEEEEEECcCeEEEEE
Confidence 456677888899999999999999988655422 011233788889999985333
No 75
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=78.63 E-value=48 Score=39.19 Aligned_cols=132 Identities=18% Similarity=0.095 Sum_probs=88.4
Q ss_pred cccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCC--CCC-----CCCC---CCcccccccccccccccccccCCChhHH
Q 042742 212 SGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDN--RDH-----RHIG---LSASTIASSFGKTISDKKELADYRPEDI 281 (834)
Q Consensus 212 gGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~--~dy-----~~~G---L~~d~iASsFGK~~~~~~~~~~~~~eDi 281 (834)
|.-.++|..+.=|-.-|--..+..+.-.+|.+=++ +-| ..+| -+++.=+.-||=. ...++++|
T Consensus 304 Gsif~aGaavqWLrd~L~~i~~a~~~e~~A~~~~~~~gVy~VPAFtGLgAPyWd~~aRGai~Glt-------rgt~~~hi 376 (499)
T COG0554 304 GSIFVAGAAVQWLRDGLGLIDDASDSEELAESVEDNGGVYFVPAFTGLGAPYWDSDARGAIFGLT-------RGTTKAHI 376 (499)
T ss_pred cceeehhhHHHHHHHhcCccCchhHHHHHHhccCCCCceEEEcccccCCCCCcCcccceeEEeeC-------CCCCHHHH
Confidence 34456666666666655555778888888855443 112 3444 3355555677742 37899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHHHHHhcc
Q 042742 282 SLSLLRMISYNIGQISYLNALRFG--LKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAFMSY 358 (834)
Q Consensus 282 a~SLl~mI~~nIgqlA~l~A~~~~--i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAlGA~L~~ 358 (834)
||++|..|++.+--+---..+..+ ++++-.-|+..+|+ +.|+.++-.+ ++++.=++.- =.+|+||++.+
T Consensus 377 ~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~-~lmQfqADil------g~~V~Rp~~~-EtTAlGaA~lA 447 (499)
T COG0554 377 ARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNN-FLMQFQADIL------GVPVERPVVL-ETTALGAAYLA 447 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccch-hHHHHHHHHh------CCeeeccccc-hhhHHHHHHHH
Confidence 999999999999888776666666 56677778777777 5677776544 5555443333 36899998764
No 76
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=75.65 E-value=39 Score=40.04 Aligned_cols=137 Identities=16% Similarity=0.055 Sum_probs=80.6
Q ss_pred ceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcC-----CCC----CCCC---CCC-CCcccccccccccccccccc
Q 042742 207 KFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQR-----GDN----RDHR---HIG-LSASTIASSFGKTISDKKEL 273 (834)
Q Consensus 207 ~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~-----Gd~----~dy~---~~G-L~~d~iASsFGK~~~~~~~~ 273 (834)
.|.+.+++..||..+..+....-...++.++...+.. |.. ..|- ... ..++.-+..+|--
T Consensus 295 ~~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~p~l~~er~p~~~~~~r~~~~g~~------- 367 (502)
T COG1070 295 WFIVMGANNTGGWLLEWLRELFGLAESYPELLEEALAVPAPAGAIGLLFLPYLSGERGPHADPAARGGFVGLT------- 367 (502)
T ss_pred eEEEEEEecccHHHHHHHHHHhccccCcHHHHHHHHhccCCCCCCCcEEeccccCCcCCCCCccceeEEEccc-------
Confidence 4556777778888888777776444356555554422 322 1121 111 1111112333322
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHH--cCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhH
Q 042742 274 ADYRPEDISLSLLRMISYNIGQISYLNALR--FGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGA 351 (834)
Q Consensus 274 ~~~~~eDia~SLl~mI~~nIgqlA~l~A~~--~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GA 351 (834)
...++++++++++.-++.++...--...+. ...++|+++|+..+|... ++.++-+. +..+.-.+..+...+
T Consensus 368 ~~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~~~~~i~~~GGgars~~w-~Qi~Ad~~------g~~v~~~~~~e~~a~ 440 (502)
T COG1070 368 LPHTRAHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGARSPLW-LQILADAL------GLPVVVPEVEEAGAL 440 (502)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEECCcccCHHH-HHHHHHHc------CCeeEecCcccchHH
Confidence 245889999999999999998754333443 455789999999999754 44576655 566655544444444
Q ss_pred HHHHhc
Q 042742 352 LGAFMS 357 (834)
Q Consensus 352 lGA~L~ 357 (834)
-||++.
T Consensus 441 g~A~~~ 446 (502)
T COG1070 441 GGAALA 446 (502)
T ss_pred HHHHHH
Confidence 444443
No 77
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=74.36 E-value=66 Score=36.40 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=30.4
Q ss_pred ccEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHH
Q 042742 186 FPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLE 239 (834)
Q Consensus 186 ~PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~ 239 (834)
..+++|+||.|++=+-+-.++......-..+||--|-.=.....+ .++++.-+
T Consensus 196 ~~~~vvDiG~gtt~i~i~~~g~~~~~~~i~~GG~~it~~i~~~l~-~~~~~AE~ 248 (371)
T TIGR01174 196 LGVCLIDIGGGTTDIAVYTGGSIRYTKVIPIGGNHITKDIAKALR-TPLEEAER 248 (371)
T ss_pred CCEEEEEeCCCcEEEEEEECCEEEEEeeecchHHHHHHHHHHHhC-CCHHHHHH
Confidence 468999999999833332234444445567888766543322223 33555433
No 78
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=74.06 E-value=10 Score=44.34 Aligned_cols=110 Identities=10% Similarity=0.012 Sum_probs=73.3
Q ss_pred HHHHHHHhcCCCC-----CCCCCCCCCcccccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHH--cCC
Q 042742 234 FDELLELSQRGDN-----RDHRHIGLSASTIASSFGKTISDKKELADYRPEDISLSLLRMISYNIGQISYLNALR--FGL 306 (834)
Q Consensus 234 fdeil~LA~~Gd~-----~dy~~~GL~~d~iASsFGK~~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~--~~i 306 (834)
|++|.++|++-.. .++... +.++.-++-|| +. .+.+++|++++++.-|++.+-++--...+. ..+
T Consensus 323 ~~~l~~~a~~~~~g~~gl~~~~p~-~~~~a~g~~~G-l~------~~~~~~~l~rAvlEgia~~~r~~~e~l~~~~~~~~ 394 (465)
T TIGR02628 323 YQMMIEEARLIANGADGVVNFQCD-LLSCGQGGIQG-LT------LNTTRGHIYRAALEGLTAQLKRNLQMLEQIGQFKA 394 (465)
T ss_pred HHHHHHHHHhCCCCCCcceeeccc-CCcccceeEEC-CC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5887777754332 112111 32344455555 21 246799999999999999999886655553 246
Q ss_pred CEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHHHHHhccc
Q 042742 307 KRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAFMSYE 359 (834)
Q Consensus 307 ~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAlGA~L~~~ 359 (834)
++|+.+|+-.+++.. |+.++-.. ++.+...++.+ .+|+||++.+.
T Consensus 395 ~~i~~~GGga~s~~w-~Qi~Adv~------g~pV~~~~~~e-~~~lGaA~~a~ 439 (465)
T TIGR02628 395 SELLLVGGGSKNTLW-NQIRANML------DIPVKVVDDAE-TTVAGAAMFGF 439 (465)
T ss_pred ceEEEecCccCCHHH-HHHhhhhc------CCeeEeccCCc-chHHHHHHHHH
Confidence 889998888777754 55566544 67776777665 67999998764
No 79
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=73.09 E-value=8.8 Score=42.97 Aligned_cols=50 Identities=28% Similarity=0.452 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHhcc--cccCcEEEeCCcc--ccchhHHHHHhCCCcccchhhHH
Q 042742 102 TKISECLDFIHSKQ--LHRGGIHATGGGA--YKFADLFKERLGVSLDKEDEMDC 151 (834)
Q Consensus 102 ~~i~~~l~fi~~~~--~~~~~i~~TGGGA--~k~~~~~~~~lgi~~~k~dEm~c 151 (834)
.+|..+++|...+. -...+|.+||||| .-..+.|.+.+|+++...+.+.-
T Consensus 257 ~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~ 310 (340)
T PF11104_consen 257 REIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKN 310 (340)
T ss_dssp HHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGG
T ss_pred HHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHh
Confidence 46667777665532 2335699999997 35678899999999998887654
No 80
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=72.51 E-value=36 Score=37.69 Aligned_cols=135 Identities=17% Similarity=0.184 Sum_probs=78.1
Q ss_pred EEEEEcCCceEEEEEcCCCceEEecccccCchhHH----------HHHHhh-cCCCCHHHHHHHh-cCCCCCCCCCCCCC
Q 042742 188 YLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYW----------GLGRLL-TKCKSFDELLELS-QRGDNRDHRHIGLS 255 (834)
Q Consensus 188 yLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~----------GL~~LL-tg~~~fdeil~LA-~~Gd~~dy~~~GL~ 255 (834)
.+++.+|+|+|+-..+. ++..-|.++.=|+|-|- -|.+|+ +|..+.+||+++- .+|--..|..
T Consensus 179 ~vVaHmGggiSV~ah~~-GrvIDvnnaldgeGPfspersG~lP~~dlv~lcfSgk~t~~El~k~i~g~gG~~aylG---- 253 (358)
T COG3426 179 IVVAHMGGGISVGAHKQ-GRVIDVNNALDGEGPFSPERSGTLPTGDLVRLCFSGKYTEEELLKKITGKGGLVAYLG---- 253 (358)
T ss_pred EEEEeccCceEEEEecC-CcEEeccCCCCCCCCCCcccCCCCChHHHHHHHhcCcccHHHHHHHhhcCCceEEEec----
Confidence 78888999999877655 57777777777777652 133332 5667788888765 3332222211
Q ss_pred cccccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhccC
Q 042742 256 ASTIASSFGKTISDKKELADYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSK 335 (834)
Q Consensus 256 ~d~iASsFGK~~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~ 335 (834)
-.++-++...-+. .+....=+..+.-+-|+--||.++. +..-+++-|+.||+..++..++- .|..-++|..+
T Consensus 254 ----T~d~~~v~~~~~~-Gd~~a~~~~~AmayQVaKeIG~~sa--vL~G~vDaIvLTGGiA~~~~f~~-~I~~~v~~iap 325 (358)
T COG3426 254 ----TNDAKEVERRIEQ-GDEKAKLAYEAMAYQVAKEIGAMSA--VLKGKVDAIVLTGGIAYEKLFVD-AIEDRVSWIAP 325 (358)
T ss_pred ----cchHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHhhhh--hcCCCCCEEEEecchhhHHHHHH-HHHHHHhhhcc
Confidence 1233333321111 0111111233444555666666543 44555688999999999998776 35555666644
No 81
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=67.52 E-value=6.7 Score=40.12 Aligned_cols=19 Identities=21% Similarity=0.642 Sum_probs=16.8
Q ss_pred eEEEEeccceeEEEEEeec
Q 042742 42 HLALDIGGSLIKLVYFSRH 60 (834)
Q Consensus 42 ~~giDIGGSL~Kivy~~~~ 60 (834)
+||||+|||.|-.|.+.+.
T Consensus 1 RigIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 1 RIGIDVGGTFTDAVLLDED 19 (176)
T ss_pred CeeEecCCCcEEEEEEeCC
Confidence 5899999999999998843
No 82
>PRK07058 acetate kinase; Provisional
Probab=67.36 E-value=22 Score=41.09 Aligned_cols=134 Identities=16% Similarity=0.136 Sum_probs=74.9
Q ss_pred cEEEEEcCCceEEEEEcCCCceEEecccccCchhHHH-HHHhhcCCCCHHHHHHHhcCCCC-------CCCCCCCCCccc
Q 042742 187 PYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWG-LGRLLTKCKSFDELLELSQRGDN-------RDHRHIGLSAST 258 (834)
Q Consensus 187 PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~G-L~~LLtg~~~fdeil~LA~~Gd~-------~dy~~~GL~~d~ 258 (834)
-+|++-+|+|.|+-.+.++..+. |++|-..+-| .+.--+|.-+..-++.|.++++- .-+.+-||-+-+
T Consensus 202 ~~Iv~HLG~G~Si~Ai~~GksvD----tsmG~tpLeGL~mgtRsG~ldp~~l~~l~~~~~~s~~el~~~Ln~~SGLlg~s 277 (396)
T PRK07058 202 KVVAAHLGSGASLCALDAGKSRD----TSMGFSTLDGIPMATRCGALDPGVVLHLLKQEGMSLDEVEDLLYHRSGLLGVS 277 (396)
T ss_pred CEEEEEeCCCceeeeeeCCEEEE----cCCCCCCcCCCcccCCCCCCChHHHHHHHHhcCCCHHHHHHHHhcccCcEEec
Confidence 57888899999999988753333 3444222223 12233566667777777665543 002222321111
Q ss_pred c-cccccccccccccccCCChhHHHHHHHHHHHHHHH-HHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhh
Q 042742 259 I-ASSFGKTISDKKELADYRPEDISLSLLRMISYNIG-QISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQF 332 (834)
Q Consensus 259 i-ASsFGK~~~~~~~~~~~~~eDia~SLl~mI~~nIg-qlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~f 332 (834)
= -+.|-.+.. .+ ..-|+-.+.|.++.|. .|+.+.|..-+++-|+|||+.-.|.+.....+...+.|
T Consensus 278 G~s~D~R~l~~-----~~---d~~A~lA~d~f~yri~k~IGa~~a~Lg~vDaiVfTGGIgEns~~vr~~i~~~l~~ 345 (396)
T PRK07058 278 GISGDTRDLLA-----SD---APEAREALDLFALRIAGEIARLAATLGGLDAVVFTAGIGEHQPAIRAAVCERLAW 345 (396)
T ss_pred CCCCCHHHHhh-----cC---CHhHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCccccCcHHHHHHHHhhhhh
Confidence 0 112222210 01 2236666777777665 46666677789999999999886776555555544443
No 83
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=64.14 E-value=4.5 Score=45.48 Aligned_cols=44 Identities=34% Similarity=0.569 Sum_probs=34.1
Q ss_pred CcEEEeCCcc--ccchhHHHHHhCCCcccchh-hHHHHHHHHHHHhc
Q 042742 119 GGIHATGGGA--YKFADLFKERLGVSLDKEDE-MDCLVAGANFLLKA 162 (834)
Q Consensus 119 ~~i~~TGGGA--~k~~~~~~~~lgi~~~k~dE-m~cli~G~~fLl~~ 162 (834)
..|++||||| .-+.+.|++.+|+++...++ .+|.++|+.-++++
T Consensus 275 ~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~~ 321 (326)
T PF06723_consen 275 NGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLEN 321 (326)
T ss_dssp H-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC-
T ss_pred CCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHhC
Confidence 3499999997 45678899999999877666 78999999988764
No 84
>PRK12379 propionate/acetate kinase; Provisional
Probab=61.09 E-value=26 Score=40.53 Aligned_cols=138 Identities=13% Similarity=0.113 Sum_probs=74.2
Q ss_pred cEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCC-------CCCCCCCCCcccc
Q 042742 187 PYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDN-------RDHRHIGLSASTI 259 (834)
Q Consensus 187 PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~-------~dy~~~GL~~d~i 259 (834)
-+|++-+|+|.|+-.+.++..+.-.-|-.-+.|-++| --+|.-++.-++.|.+++.- .-|.+-||-+-+=
T Consensus 198 ~lIv~HLG~G~Si~Ai~~GksvDtsmG~tPleGl~mg---tRsG~ldp~~l~~l~~~~~~s~~el~~~Lnk~SGLlg~sG 274 (396)
T PRK12379 198 GLVVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMG---TRSGDVDFGAMAWIASQTGQTLGDLERVVNKESGLLGISG 274 (396)
T ss_pred CEEEEEeCCCcchheeeCCEEEEeCCCCCcccCCCCC---CCCCCCChHHHHHHHHhcCCCHHHHHHHHhccccceEecC
Confidence 5788889999999888875444433343324444444 12344455555555544332 0012223311110
Q ss_pred -cccccccccccccccCCChhHHHHHHHHHHHHHHH-HHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhh
Q 042742 260 -ASSFGKTISDKKELADYRPEDISLSLLRMISYNIG-QISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQF 332 (834)
Q Consensus 260 -ASsFGK~~~~~~~~~~~~~eDia~SLl~mI~~nIg-qlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~f 332 (834)
-+.|-.+..... .-..-|+-.+.|.++.|. .|+.+.|...+++-|+|||+.-.|.+..-..+-..+.|
T Consensus 275 ~s~D~R~v~~~~~-----~gd~~A~lA~d~f~yri~k~IGa~~a~L~~vDaIVFTGGIGen~~~vR~~i~~~L~~ 344 (396)
T PRK12379 275 LSSDLRVLEKAWH-----EGHERAQLAIKTFVHRIARHIAGHAASLHRLDGIIFTGGIGENSSLIRRLVMEHLAV 344 (396)
T ss_pred CCCCHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCccccCcHHHHHHHHhhhhh
Confidence 112222211000 002245666777777765 46666777789999999999988887665544444433
No 85
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=60.48 E-value=67 Score=37.12 Aligned_cols=129 Identities=20% Similarity=0.282 Sum_probs=64.5
Q ss_pred cEEEEEcCCceEEEEEcCCCceEEecccccC----chhHHHHHHhhcCCCCHHHHHHHhcCCCC-----CC--CCCCCCC
Q 042742 187 PYLLVNIGSGVSMIKVDGDGKFERVSGTNVG----GGTYWGLGRLLTKCKSFDELLELSQRGDN-----RD--HRHIGLS 255 (834)
Q Consensus 187 PyLlVNIGSGvSiikV~~~~~f~RvgGtsiG----GGTf~GL~~LLtg~~~fdeil~LA~~Gd~-----~d--y~~~GL~ 255 (834)
-.|+.-+|+|.|+-.+.++..+. |++| .|-|+| --+|.-+...++.|++++.- .+ |.+-||.
T Consensus 200 ~lIvaHLG~G~Sv~A~~~GrsvD----tsmG~tpleGl~m~---tRsG~ldp~~~~~l~~~~~~s~~e~~~~l~~~sGL~ 272 (388)
T PF00871_consen 200 NLIVAHLGSGASVCAIKNGRSVD----TSMGFTPLEGLMMG---TRSGDLDPGVLLYLCRSGGMSADELERLLNKESGLL 272 (388)
T ss_dssp EEEEEEESSSEEEEEEETTEEEE----ESBTSSTTSSS--S---SB--S--THHHHHHHHHCT--HHHHHHHHHHSSHHH
T ss_pred CEEEEEeCCCcEEEEEECCEEEE----ecCCCCCCCCCCCC---CCCCCCChHHHHHHHHhcCCCHHHHHHHHHhccCcE
Confidence 57888899999999888642222 4444 244433 12344455556666544332 00 1111221
Q ss_pred ccc-ccccccccccccccccCCChhHHHHHHHHHHHHHHH-HHHHHHHHHc-CCCEEEEecccccCcchhHHHHH
Q 042742 256 AST-IASSFGKTISDKKELADYRPEDISLSLLRMISYNIG-QISYLNALRF-GLKRIFFGGFFIRGHAYTMDTIS 327 (834)
Q Consensus 256 ~d~-iASsFGK~~~~~~~~~~~~~eDia~SLl~mI~~nIg-qlA~l~A~~~-~i~~I~f~G~fi~~~~~~m~~ls 327 (834)
+-+ +.+.|-.+..... .-..=|+-.+.++++.|. .|+.+.|... +++-|+|||+.-.|.++.-..+.
T Consensus 273 g~sG~s~D~r~i~~~~~-----~gd~~A~la~d~~~y~i~k~Ig~~~a~l~G~vDaivfTGGige~~~~vr~~~~ 342 (388)
T PF00871_consen 273 GLSGISNDMREIEARIE-----EGDERAKLALDAFAYQIAKYIGAYAAVLEGGVDAIVFTGGIGENSALVRERIC 342 (388)
T ss_dssp HHHSSSS-HHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHHHHHHHHHTSS-SEEEEEHHHHHHTHHHHHHHH
T ss_pred eccCCCCCHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEccccccchHHHHHHHH
Confidence 100 0112222211100 011125555666666654 5777778886 99999999999888876655444
No 86
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=60.18 E-value=77 Score=35.21 Aligned_cols=141 Identities=11% Similarity=0.103 Sum_probs=69.0
Q ss_pred ccEEEEEcCCceE-EEEEcCCCce-EEecccc-cCchhHHHHHHh-hc---CCC---CHHHHHHHhcCCCCCCCCCCCCC
Q 042742 186 FPYLLVNIGSGVS-MIKVDGDGKF-ERVSGTN-VGGGTYWGLGRL-LT---KCK---SFDELLELSQRGDNRDHRHIGLS 255 (834)
Q Consensus 186 ~PyLlVNIGSGvS-iikV~~~~~f-~RvgGts-iGGGTf~GL~~L-Lt---g~~---~fdeil~LA~~Gd~~dy~~~GL~ 255 (834)
-+.++|.||.+|. ++.+++ .++ ...+||. .|--.+...... |. |.. +++.+-++-++|.. .
T Consensus 167 ~~~lVIDIG~~TtD~~~~~~-~~~~~~~s~s~~~G~~~~~~~I~~~i~~~~g~~~~~~~~~i~~~l~~g~~-------~- 237 (320)
T TIGR03739 167 EQSLIIDPGYFTFDWLVARG-MRLVQKRSGSVNGGMSDIYRLLAAEISKDIGTPAYRDIDRIDLALRTGKQ-------P- 237 (320)
T ss_pred CcEEEEecCCCeeeeehccC-CEEcccccCCchhHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHhCCc-------e-
Confidence 4579999999999 665554 232 3334443 454444443332 22 433 44444332344542 0
Q ss_pred cccccccccccccccccccCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhcc
Q 042742 256 ASTIASSFGKTISDKKELADYRP-EDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWS 334 (834)
Q Consensus 256 ~d~iASsFGK~~~~~~~~~~~~~-eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws 334 (834)
..+||-. +.++ -+.+...+..+..+|-+- + -....+++|+|+|+-.. +-...+. +.|.
T Consensus 238 -----~~~gk~~-------di~~~~~~~~~~~~~~v~~i~~~--~-~~~~~~~~Iil~GGGa~---ll~~~l~---~~f~ 296 (320)
T TIGR03739 238 -----RIYQKPV-------DIKRCLELAETVAQQAVSTMMTW--I-GAPESIQNIVLVGGGAF---LFKKAVK---AAFP 296 (320)
T ss_pred -----eecceec-------CchHHHHHHHHHHHHHHHHHHHh--c-ccCCcccEEEEeCCcHH---HHHHHHH---HHCC
Confidence 2244422 1111 012333333333333221 0 12346889999775433 1111121 2333
Q ss_pred CCCceEeeccCCchhhHHHHHhcc
Q 042742 335 KGEAQAMFLRHEGFLGALGAFMSY 358 (834)
Q Consensus 335 ~g~~~a~Fl~h~gy~GAlGA~L~~ 358 (834)
+ .++.+++++.|+=|.|=...+
T Consensus 297 ~--~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 297 K--HRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred C--CeeEecCCcHHHHHHHHHHhh
Confidence 2 566789999999999976543
No 87
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=60.08 E-value=1.7e+02 Score=33.94 Aligned_cols=54 Identities=15% Similarity=0.085 Sum_probs=32.7
Q ss_pred ccEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHH
Q 042742 186 FPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLEL 240 (834)
Q Consensus 186 ~PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~L 240 (834)
...++|+||.|++=+-+-.++......--.+||-.+-.=...-.+ .++++.-++
T Consensus 204 ~gv~vvDiGggtTdisv~~~G~l~~~~~i~~GG~~it~dIa~~l~-i~~~~AE~l 257 (420)
T PRK09472 204 LGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDIAYAFG-TPPSDAEAI 257 (420)
T ss_pred cCeEEEEeCCCceEEEEEECCEEEEEeeeechHHHHHHHHHHHhC-cCHHHHHHH
Confidence 458999999999944333346666666677787665433322233 346554443
No 88
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=58.74 E-value=44 Score=38.80 Aligned_cols=138 Identities=14% Similarity=0.160 Sum_probs=73.3
Q ss_pred cEEEEEcCCceEEEEEcCCCceEEecc-cccCchhHHHHHHhhcCCCCHHHHHHHhcCCCC-------CCCCCCCCCccc
Q 042742 187 PYLLVNIGSGVSMIKVDGDGKFERVSG-TNVGGGTYWGLGRLLTKCKSFDELLELSQRGDN-------RDHRHIGLSAST 258 (834)
Q Consensus 187 PyLlVNIGSGvSiikV~~~~~f~RvgG-tsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~-------~dy~~~GL~~d~ 258 (834)
-.|++-+|+|.|+-.+.++..+.-.-| |.+ .|-++| --+|.-+..-++.|.+++.- .=|.+-||-+-+
T Consensus 203 ~lIvaHLG~GaSi~Ai~~GrsvDtsmG~tpl-eGl~m~---tRsG~ldp~~v~~l~~~~~~s~~el~~~L~~~sGLlg~s 278 (402)
T PRK00180 203 NLITCHLGNGASIAAIKNGKSVDTSMGFTPL-EGLVMG---TRSGDIDPAIIPYLMEKLGMSVDEIDNLLNKKSGLLGLS 278 (402)
T ss_pred CEEEEEeCCCceeeeeeCCEEEEeCCCCCcc-cCCCCC---CCCCCCChHHHHHHHHhcCCCHHHHHHHHhccccceEec
Confidence 578888999999988876433332222 221 333332 12455566666666655432 012233432211
Q ss_pred -ccccccccccccccccCCChhHHHHHHHHHHHHHHH-HHHHHHHHH-cCCCEEEEecccccCcchhHHHHHHHHhhc
Q 042742 259 -IASSFGKTISDKKELADYRPEDISLSLLRMISYNIG-QISYLNALR-FGLKRIFFGGFFIRGHAYTMDTISFAVQFW 333 (834)
Q Consensus 259 -iASsFGK~~~~~~~~~~~~~eDia~SLl~mI~~nIg-qlA~l~A~~-~~i~~I~f~G~fi~~~~~~m~~ls~ai~fw 333 (834)
+-+.|-.+..... ++ ..-|+-.+.++++.|. +|+.+.|.. -+++-|+|||+.-.+.+.....+...+.|+
T Consensus 279 G~s~D~Rel~~~~~--~g---d~~A~lA~d~f~yri~k~Iga~~a~L~g~vDaiVfTGGIgE~s~~lr~~I~~~l~~l 351 (402)
T PRK00180 279 GVSSDMRDIEAAAE--EG---DERAKLALDVFVYRLAKYIGSYAAALNGRLDAIVFTAGIGENSALVREKVLEGLEFL 351 (402)
T ss_pred CCCCCHHHHHHHHH--CC---CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCccccCCHHHHHHHHhhhhhc
Confidence 1122222211000 00 1235555666666654 466666777 789999999998867766655565555444
No 89
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=58.64 E-value=28 Score=41.38 Aligned_cols=75 Identities=12% Similarity=-0.028 Sum_probs=54.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHHHH
Q 042742 277 RPEDISLSLLRMISYNIGQISYLNALRFG--LKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGA 354 (834)
Q Consensus 277 ~~eDia~SLl~mI~~nIgqlA~l~A~~~~--i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAlGA 354 (834)
+++|++++++.-|++.+-++--..-+..+ +++|+.+|+..+++.. ++.++-.. ++.+.-.++. -.+|+||
T Consensus 379 ~~~~~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~GGga~s~~w-~Qi~ADvl------g~pV~~~~~~-e~~alGa 450 (520)
T PRK10939 379 NKATLFRALEENAAIVSACNLQQIAAFSGVFPSSLVFAGGGSKGKLW-SQILADVT------GLPVKVPVVK-EATALGC 450 (520)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCcccCHHH-HHHHHHhc------CCeeEEeccc-CchHHHH
Confidence 78999999999999988777554433224 5789999998887765 44565444 5666655544 3789999
Q ss_pred Hhccc
Q 042742 355 FMSYE 359 (834)
Q Consensus 355 ~L~~~ 359 (834)
++.+.
T Consensus 451 A~lA~ 455 (520)
T PRK10939 451 AIAAG 455 (520)
T ss_pred HHHHH
Confidence 99763
No 90
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=57.25 E-value=84 Score=35.75 Aligned_cols=60 Identities=17% Similarity=0.167 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHh-hccCCCceEeec---cCCchhhHHHHHhccc
Q 042742 296 ISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQ-FWSKGEAQAMFL---RHEGFLGALGAFMSYE 359 (834)
Q Consensus 296 lA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~-fws~g~~~a~Fl---~h~gy~GAlGA~L~~~ 359 (834)
++.+.+...+.+.|+.+|.+.+...+.-. +...++ +.. .+.+=+ +--.=-+|.||++.+.
T Consensus 251 V~~l~~~~~~~~~IilSGr~~~~~~~~~~-l~~~l~~~~~---~~v~~l~~~~~~aKeaA~GaAiIA~ 314 (343)
T PF07318_consen 251 VASLLASVPDPDEIILSGRFSRIPEFRKK-LEDRLEDYFP---VKVRKLEGLARKAKEAAQGAAIIAN 314 (343)
T ss_pred HHHHhcccCCCCEEEEeccccccHHHHHH-HHHHHHhhcc---cceeecccccccchhhhhhHHHHhh
Confidence 34555666777889999999999887553 333442 222 111111 1111348999998764
No 91
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=57.15 E-value=29 Score=39.61 Aligned_cols=149 Identities=13% Similarity=0.108 Sum_probs=84.4
Q ss_pred CCceEEecccc-----cCchhHHHHHHhhcCCC---CHHHHHHHhcCCCC-CCCCCC-----CCCcccc----------c
Q 042742 205 DGKFERVSGTN-----VGGGTYWGLGRLLTKCK---SFDELLELSQRGDN-RDHRHI-----GLSASTI----------A 260 (834)
Q Consensus 205 ~~~f~RvgGts-----iGGGTf~GL~~LLtg~~---~fdeil~LA~~Gd~-~dy~~~-----GL~~d~i----------A 260 (834)
+++++++..+. ..=|.|++.+..++|-. +=-+++-||.=|+. ..+... .+..+.. .
T Consensus 34 ~~~~~~~~~~~~~~s~~slG~~Y~~~T~~lGf~~~~~egKvMGLA~YG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (360)
T PF02543_consen 34 GGEIERIRESSYPHSGNSLGYFYEAITEYLGFKPNSDEGKVMGLAAYGKPPDRFDELLEELFSLNFDGDFDFRQKIPFLS 113 (360)
T ss_dssp TTEEEE--EEEEEGG-G-HHHHHHHHHHHTTS-TT--HHHHHHHHTTS--S-TTTTTEEEETTEEEETTSHHHHHHHHHS
T ss_pred CCEEEEeeeecCCchHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCCchHHHHHHHHHhccccCCCeeeeccccccc
Confidence 35666643332 23678888888888865 44678999999944 111110 1100000 0
Q ss_pred cccccc---c-cccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEecccccCcchhHHHHHHHHhhccC
Q 042742 261 SSFGKT---I-SDKKELADYRPEDISLSLLRMISYNIGQISYLNALRFGLKR-IFFGGFFIRGHAYTMDTISFAVQFWSK 335 (834)
Q Consensus 261 SsFGK~---~-~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~-I~f~G~fi~~~~~~m~~ls~ai~fws~ 335 (834)
....+. . ............|+|+++-..+-..+..++..+-++.++++ +.++|+..-|....+.... .
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g~~~~L~laGGvaLN~~~N~~l~~-------~ 186 (360)
T PF02543_consen 114 TSLLRFIDFFARSPEEPLTQRHADLAASAQKVLEEIVLHLVRHLLERTGIDNNLCLAGGVALNCKANGRLLE-------E 186 (360)
T ss_dssp SS----EEEETTTCEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT--SEEEEESGGGG-HHHHHHHHT-------S
T ss_pred cchhhhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEechHHHHHHHHHHHHh-------c
Confidence 000000 0 00001113578999999999999999999988899999988 9999999999887776443 2
Q ss_pred CCc-eEeeccCCchh-hHHHHHhcccc
Q 042742 336 GEA-QAMFLRHEGFL-GALGAFMSYEK 360 (834)
Q Consensus 336 g~~-~a~Fl~h~gy~-GAlGA~L~~~~ 360 (834)
... +++.+...+=. .||||++.+..
T Consensus 187 ~~~~~v~V~Pa~gD~G~aiGaA~~~~~ 213 (360)
T PF02543_consen 187 PGFDNVFVPPAAGDAGLAIGAALYAWH 213 (360)
T ss_dssp TT-SEEE--TTTSGGGHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCcchHHHHHHHHHH
Confidence 233 45555554444 48999998753
No 92
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=56.89 E-value=1.5e+02 Score=33.00 Aligned_cols=77 Identities=17% Similarity=-0.020 Sum_probs=46.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHcC-------CC-EEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCC
Q 042742 275 DYRPEDISLSLLRMISYNIGQISYLNALRFG-------LK-RIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHE 346 (834)
Q Consensus 275 ~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~-------i~-~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~ 346 (834)
..+++++.. ++....+.|.+...-.-+..+ ++ .|+++|+-.+-+-+.. .++..+ +.++.-..|+
T Consensus 238 ~i~~~~~~e-ii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e-~l~~~~------~~~v~~~~~P 309 (336)
T PRK13928 238 TVTSEEIRE-ALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDK-LLAEET------KVPVYIAEDP 309 (336)
T ss_pred EECHHHHHH-HHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHH-HHHHHH------CCCceecCCH
Confidence 356677664 333334444444333333332 34 6999988777776554 344444 3556666799
Q ss_pred chhhHHHHHhccc
Q 042742 347 GFLGALGAFMSYE 359 (834)
Q Consensus 347 gy~GAlGA~L~~~ 359 (834)
.++-|+||++...
T Consensus 310 ~~ava~Gaa~~~~ 322 (336)
T PRK13928 310 ISCVALGTGKMLE 322 (336)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999753
No 93
>PRK07157 acetate kinase; Provisional
Probab=54.47 E-value=58 Score=37.80 Aligned_cols=137 Identities=12% Similarity=0.078 Sum_probs=75.7
Q ss_pred CccEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHH-hhcCCCCHHHHHHHhcCCCC-------CCCCCCCCCc
Q 042742 185 LFPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGR-LLTKCKSFDELLELSQRGDN-------RDHRHIGLSA 256 (834)
Q Consensus 185 ~~PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~-LLtg~~~fdeil~LA~~Gd~-------~dy~~~GL~~ 256 (834)
-.-.|++-.|+|.|+-.+.++..+. |++|-..+-||+. --+|.-|..-++.|.+++.- .-|.+-||-+
T Consensus 198 ~~~~Iv~HLG~G~Si~Ai~~GksvD----tsmG~tpLeGl~mgtRsG~ldp~~~~~l~~~~~~s~~e~~~~Ln~~SGLlg 273 (400)
T PRK07157 198 KVNFVNLHIGNGASLCAIKNSKSID----TSMGLTPLAGVMMGTRSGDIDPSIHEFVAKEANMSISEFTDLLNKKSGLLG 273 (400)
T ss_pred ccCEEEEEeCCCceeeeeeCCeEEE----eCCCCCCccCCCCCCCCCCCChHHHHHHHHhcCCCHHHHHHHHhhccCceE
Confidence 3458888899999999988643332 4444222222221 12455667777777655432 0122333322
Q ss_pred ccc-cccccccccccccccCCChhHHHHHHHHHHHHHHH-HHHHHHHHHc-CCCEEEEecccccCcchhHHHHHHHH
Q 042742 257 STI-ASSFGKTISDKKELADYRPEDISLSLLRMISYNIG-QISYLNALRF-GLKRIFFGGFFIRGHAYTMDTISFAV 330 (834)
Q Consensus 257 d~i-ASsFGK~~~~~~~~~~~~~eDia~SLl~mI~~nIg-qlA~l~A~~~-~i~~I~f~G~fi~~~~~~m~~ls~ai 330 (834)
-+= -+.|-.+..... .-..-|+=.+.|.++.|. .|+.+.|... +++-|+|||+.-.|.+.....+...+
T Consensus 274 ~sG~s~D~R~l~~~~~-----~gd~~A~lA~d~f~yri~k~Ig~~~a~L~G~vDaiVFTgGIGen~~~vr~~i~~~l 345 (400)
T PRK07157 274 VSGISSDLRDVIKAAE-----SGNKRAKFALDLYAQKIVDYLANYINKIGKKIDAIVFTAGVGENSAFVRELVINKI 345 (400)
T ss_pred ecCCCCcHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEECCccccCcHHHHHHHHhhc
Confidence 110 112222211000 002245566777777765 5677778888 49999999999988885554454444
No 94
>PRK12397 propionate kinase; Reviewed
Probab=53.44 E-value=39 Score=39.24 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=74.0
Q ss_pred cEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCC-------CCCCCCCCCccc-
Q 042742 187 PYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDN-------RDHRHIGLSAST- 258 (834)
Q Consensus 187 PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~-------~dy~~~GL~~d~- 258 (834)
-.|++-+|+|.|+-.+.++..+.-.-|-.-+.|-+|| --+|.-|..-++.|.+++.- .-|.+-||-+-+
T Consensus 202 ~lIv~HLG~GaSi~Ai~~GksvDtsmG~tPleGl~mg---tRsG~lDp~~l~~l~~~~~~s~~e~~~~Lnk~SGLlg~sG 278 (404)
T PRK12397 202 RVICCHLGNGSSICAIKNGRSVNTSMGFTPQSGVMMG---TRSGDIDPSILPWIAQREGKTPQQLNQLLNNESGLLGVSG 278 (404)
T ss_pred CEEEEEeCCCcchheeeCCEEEEcCCCCCCCCCCCCC---CCCCCCChHHHHHHHHhcCCCHHHHHHHHhccccceEecC
Confidence 5788889999999888875444433332223444443 12344555566655544432 002222332111
Q ss_pred ccccccccccccccccCCChhHHHHHHHHHHHHHHH-HHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHh
Q 042742 259 IASSFGKTISDKKELADYRPEDISLSLLRMISYNIG-QISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQ 331 (834)
Q Consensus 259 iASsFGK~~~~~~~~~~~~~eDia~SLl~mI~~nIg-qlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~ 331 (834)
+-+.|-.+..... .-..-|+-.+.|.++.|. .++.+.|..-+++-|+|||+.-.|.+..-..+-..+.
T Consensus 279 ~s~D~R~l~~~~~-----~gd~~A~lA~d~f~yri~k~IGa~~a~lggvDaiVFTGGIGEns~~vR~~ic~~L~ 347 (404)
T PRK12397 279 VSSDYRDVEQAAN-----TGNRQAKLALTLFAERIRATIGSYIMQMGGLDALVFTGGIGENSARARSAVCHNLQ 347 (404)
T ss_pred CCCCHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCchhhCCHHHHHHHHhhhh
Confidence 0112222211000 001235556677776665 4666667788999999999998888866554444443
No 95
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=52.48 E-value=56 Score=36.14 Aligned_cols=156 Identities=18% Similarity=0.185 Sum_probs=78.7
Q ss_pred CccEEEEEcCCc-eEEEEEcCCCceEEecccc-----cCchhHHHHHHhhcC-C-CCHHHHHHHhcCCCCCCCCCCCCCc
Q 042742 185 LFPYLLVNIGSG-VSMIKVDGDGKFERVSGTN-----VGGGTYWGLGRLLTK-C-KSFDELLELSQRGDNRDHRHIGLSA 256 (834)
Q Consensus 185 ~~PyLlVNIGSG-vSiikV~~~~~f~RvgGts-----iGGGTf~GL~~LLtg-~-~~fdeil~LA~~Gd~~dy~~~GL~~ 256 (834)
...||+|-||-+ ++++.|-++.-.--+|||+ +|||.+=|=...+++ . .+|.+.+ +-+-|-. |- .|++
T Consensus 162 k~nfIavE~G~aytaavaV~nGkIVDGmgGttgf~gylg~g~MD~ElAYaLa~~~~~fsK~~-lf~gGa~--~i-~gv~- 236 (374)
T COG2441 162 KVNFIAVEIGFAYTAAVAVKNGKIVDGMGGTTGFTGYLGGGAMDGELAYALANYLERFSKSL-LFEGGAA--YI-AGVD- 236 (374)
T ss_pred hhhhHHHhhhccceeEEEEECCEEEeccCCccCcccccccccccHHHHHHHHHhhhhccHhh-eeccccc--cc-ccCC-
Confidence 355799999977 4588887643344567765 677766554333333 2 2343322 1111111 10 0221
Q ss_pred ccccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHH-HHHHHcCCCEEEEecccccCcchhHHHHHHHHhhccC
Q 042742 257 STIASSFGKTISDKKELADYRPEDISLSLLRMISYNIGQISY-LNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSK 335 (834)
Q Consensus 257 d~iASsFGK~~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~-l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~ 335 (834)
---+|-|...+++ + +.. ++|..+-|..... +.... --.-||.+|.|.+-+.+--+..+.--+++|.
T Consensus 237 --sp~ef~~~ake~e-----n---le~--~~~l~e~vvK~v~tllps~-~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~ 303 (374)
T COG2441 237 --SPEEFVKLAKEDE-----N---LET--YNALIEGVVKDVFTLLPST-YPDAIYLSGRFSRIPRFFSDVKEKLRDAFSS 303 (374)
T ss_pred --CHHHHHHHhhccc-----c---hHH--HHHHHHHHHHHHHHhcccc-CcceEEEeeecccccchhhHHHHHHHHHHhh
Confidence 0023333222221 1 111 3333333332211 11111 1134999999998777766666555557777
Q ss_pred CCceEeeccCCchh----hHHHHHhcc
Q 042742 336 GEAQAMFLRHEGFL----GALGAFMSY 358 (834)
Q Consensus 336 g~~~a~Fl~h~gy~----GAlGA~L~~ 358 (834)
.+.-.....-++|. +|-||++.+
T Consensus 304 ~g~~~evr~le~~~K~KeaA~GaAiiA 330 (374)
T COG2441 304 YGFGIEVRKLESRAKAKEAAEGAAIIA 330 (374)
T ss_pred cCccceeehhhhhhhhhhhccchhhhh
Confidence 77666665566664 567777654
No 96
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=51.65 E-value=1.2e+02 Score=32.40 Aligned_cols=138 Identities=23% Similarity=0.368 Sum_probs=81.4
Q ss_pred CCCeEEEeEeecCCHHHHHHHHHhcccccCcEEEeCCccc-cchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccce
Q 042742 90 LGGRLHFVKFETTKISECLDFIHSKQLHRGGIHATGGGAY-KFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAF 168 (834)
Q Consensus 90 ~~g~l~F~~f~t~~i~~~l~fi~~~~~~~~~i~~TGGGA~-k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f 168 (834)
..|+||-.-+.+..-.+++++++......+-+.=|-+-|- ...+.+ .++|.++...+=++.+-.-++|+-++-- -.|
T Consensus 14 lSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL-~rlgf~v~eeei~tsl~aa~~~~~~~~l-rP~ 91 (262)
T KOG3040|consen 14 LSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERL-QRLGFDVSEEEIFTSLPAARQYLEENQL-RPY 91 (262)
T ss_pred ccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHH-HHhCCCccHHHhcCccHHHHHHHHhcCC-Cce
Confidence 4688998888888889999999976554432333333332 111222 4678888877777888888888876432 233
Q ss_pred Eee-cCcee-eeecCCCCCccEEEEEcC---Cc------------------eEEEEEcCCCceEEecccccCchhHHHHH
Q 042742 169 THM-EGQKE-FVQIDTNDLFPYLLVNIG---SG------------------VSMIKVDGDGKFERVSGTNVGGGTYWGLG 225 (834)
Q Consensus 169 ~~~-~~~~~-~~~~~~~~~~PyLlVNIG---SG------------------vSiikV~~~~~f~RvgGtsiGGGTf~GL~ 225 (834)
.+. +.-.+ |-+++++ +|=-+| || -+ -+.|.+....=|+|+.|-.+|=|+|.--.
T Consensus 92 l~v~d~a~~dF~gidTs--~pn~VV-iglape~F~y~~ln~AFrvL~e~~k~~LIai~kgryykr~~Gl~lgpG~fv~aL 168 (262)
T KOG3040|consen 92 LIVDDDALEDFDGIDTS--DPNCVV-IGLAPEGFSYQRLNRAFRVLLEMKKPLLIAIGKGRYYKRVDGLCLGPGPFVAAL 168 (262)
T ss_pred EEEcccchhhCCCccCC--CCCeEE-EecCcccccHHHHHHHHHHHHcCCCCeEEEecCceeeeeccccccCchHHHHHh
Confidence 333 32222 2122222 111111 11 11 12233333345899999999999999877
Q ss_pred HhhcCCC
Q 042742 226 RLLTKCK 232 (834)
Q Consensus 226 ~LLtg~~ 232 (834)
..-||++
T Consensus 169 eyatg~~ 175 (262)
T KOG3040|consen 169 EYATGCE 175 (262)
T ss_pred hhccCce
Confidence 7777764
No 97
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=50.52 E-value=23 Score=39.48 Aligned_cols=43 Identities=33% Similarity=0.565 Sum_probs=36.8
Q ss_pred cEEEeCCccc--cchhHHHHHhCCCcccc-hhhHHHHHHHHHHHhc
Q 042742 120 GIHATGGGAY--KFADLFKERLGVSLDKE-DEMDCLVAGANFLLKA 162 (834)
Q Consensus 120 ~i~~TGGGA~--k~~~~~~~~lgi~~~k~-dEm~cli~G~~fLl~~ 162 (834)
.|.+|||+|. .+.+.+++.+++++... +=++|.+.|+-+.+.+
T Consensus 278 ~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~ 323 (336)
T PRK13928 278 GIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLEN 323 (336)
T ss_pred CEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhc
Confidence 5999999976 67889999999987655 4899999999999875
No 98
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=49.03 E-value=52 Score=39.37 Aligned_cols=88 Identities=19% Similarity=0.165 Sum_probs=61.4
Q ss_pred cccccccccccccccccccCCCh---hHHHHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEecccccCcchhHHHHHHHH
Q 042742 256 ASTIASSFGKTISDKKELADYRP---EDISLSLLRMISYNIGQISYLNALRFG--LKRIFFGGFFIRGHAYTMDTISFAV 330 (834)
Q Consensus 256 ~d~iASsFGK~~~~~~~~~~~~~---eDia~SLl~mI~~nIgqlA~l~A~~~~--i~~I~f~G~fi~~~~~~m~~ls~ai 330 (834)
+++-++-||=-. ..++ +|++++++.-|++.+-++--..-+ .+ +++|..+|+..+++.. |+.++-..
T Consensus 397 p~arG~~~Gl~~-------~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~-~g~~~~~i~~~GGga~s~~w-~Qi~ADvl 467 (541)
T TIGR01315 397 PNMRGVIIGLSM-------DRSKDGLALLYYATMEFIAYGTRQIVEAMNT-AGHTIKSIFMSGGQCQNPLL-MQLIADAC 467 (541)
T ss_pred CCCceEEECCCC-------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCccEEEEecCcccCHHH-HHHHHHHH
Confidence 455566666211 3355 789999999999999877554432 34 6789999998877764 55666544
Q ss_pred hhccCCCceEeeccCCchhhHHHHHhccc
Q 042742 331 QFWSKGEAQAMFLRHEGFLGALGAFMSYE 359 (834)
Q Consensus 331 ~fws~g~~~a~Fl~h~gy~GAlGA~L~~~ 359 (834)
++.+.-+++.+ .+|+||++.+.
T Consensus 468 ------g~pV~~~~~~e-~~alGaA~lA~ 489 (541)
T TIGR01315 468 ------DMPVLIPYVNE-AVLHGAAMLGA 489 (541)
T ss_pred ------CCeeEecChhH-HHHHHHHHHHH
Confidence 66666666655 78999999763
No 99
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=48.58 E-value=62 Score=37.61 Aligned_cols=137 Identities=18% Similarity=0.122 Sum_probs=74.8
Q ss_pred cEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHH-hhcCCCCHHHHHHHhcCCCC-------CCCCCCCCCccc
Q 042742 187 PYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGR-LLTKCKSFDELLELSQRGDN-------RDHRHIGLSAST 258 (834)
Q Consensus 187 PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~-LLtg~~~fdeil~LA~~Gd~-------~dy~~~GL~~d~ 258 (834)
-+|++-+|+|.|+-.+.++..+. |++|-..+-||+. --+|.-|..-++.|.++++- .-|.+-||-+-+
T Consensus 207 ~~Iv~HLG~G~Si~Ai~~GksvD----TsmG~tpLeGl~mgtRsG~lDp~~~~~l~~~~~~s~~e~~~~Ln~~SGLlg~s 282 (404)
T TIGR00016 207 NLIVCHLGNGASVCAVKNGKSID----TSMGFTPLEGLMMGTRSGDIDPAIISYLAETLGMSADDIENTLNKKSGLLGIS 282 (404)
T ss_pred CEEEEEeCCCceeeeeeCCEEEE----eCCCCCCccCCCCCCCCCCCChHHHHHHHHhcCCCHHHHHHHHhhcccceEec
Confidence 48888899999999887643222 4454333333322 12455566666666655443 012222332211
Q ss_pred c-cccccccccccccccCCChhHHHHHHHHHHHHHHH-HHHHHHHHHcC-CCEEEEecccccCcchhHHHHHHHHhh
Q 042742 259 I-ASSFGKTISDKKELADYRPEDISLSLLRMISYNIG-QISYLNALRFG-LKRIFFGGFFIRGHAYTMDTISFAVQF 332 (834)
Q Consensus 259 i-ASsFGK~~~~~~~~~~~~~eDia~SLl~mI~~nIg-qlA~l~A~~~~-i~~I~f~G~fi~~~~~~m~~ls~ai~f 332 (834)
= -+.|=.+.... +.. ..-|+-.+.|.++.|. .|+.+.|...| ++-|+|||+.-.|.+.....+...+.|
T Consensus 283 G~s~D~Rel~~~~----~~g-d~~A~lA~~~f~yri~k~Iga~~a~L~G~vDaiVFTGGIGEns~~vr~~i~~~l~~ 354 (404)
T TIGR00016 283 GLSSDLRDIEDAY----AEG-NEQAQLAIKMYVHRIAKYIGSYIASLEGNLDAIVFTGGIGENAATVRELVLEALEF 354 (404)
T ss_pred CCCCCHHHHHHHH----HCC-CHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCccccCCHHHHHHHHhhhhh
Confidence 0 11222221000 000 1245666777777765 46677778885 999999999886776655555544433
No 100
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=48.35 E-value=51 Score=38.43 Aligned_cols=76 Identities=8% Similarity=-0.106 Sum_probs=53.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHH--cCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHH
Q 042742 275 DYRPEDISLSLLRMISYNIGQISYLNALR--FGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGAL 352 (834)
Q Consensus 275 ~~~~eDia~SLl~mI~~nIgqlA~l~A~~--~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAl 352 (834)
..+++|++++++.-|++..-++--..-+. ..+++|+.+|+-.++.. -|+.++-.. ++.+.-. +.-.+|+
T Consensus 355 ~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~-w~Qi~ADvl------g~pV~~~--~~e~~a~ 425 (454)
T TIGR02627 355 PESDAELARCIFDSLALLYRQVLLELAELRGKPISQLHIVGGGSQNAF-LNQLCADAC------GIRVIAG--PVEASTL 425 (454)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCEEEEECChhhhHH-HHHHHHHHh------CCceEcC--CchHHHH
Confidence 46899999999999999987765444332 34678999998887775 465676655 4444322 3348899
Q ss_pred HHHhccc
Q 042742 353 GAFMSYE 359 (834)
Q Consensus 353 GA~L~~~ 359 (834)
||++.+.
T Consensus 426 GaA~~a~ 432 (454)
T TIGR02627 426 GNIGVQL 432 (454)
T ss_pred HHHHHHH
Confidence 9988653
No 101
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=47.03 E-value=58 Score=38.34 Aligned_cols=75 Identities=7% Similarity=-0.108 Sum_probs=54.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHH--cCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHHH
Q 042742 276 YRPEDISLSLLRMISYNIGQISYLNALR--FGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALG 353 (834)
Q Consensus 276 ~~~eDia~SLl~mI~~nIgqlA~l~A~~--~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAlG 353 (834)
.+++|++++++..|++.+-+.--...+. ..+++|+.+|+..++... ++.++-+. ++.+.-.+ .-.+|+|
T Consensus 344 ~~~~~l~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w-~Qi~ADvl------g~pV~~~~--~ea~alG 414 (471)
T PRK10640 344 ESDAELARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALL-NQLCADAC------GIRVIAGP--VEASTLG 414 (471)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHH-HHHHHHHh------CCCeeeCC--hhHHHHH
Confidence 4899999999999999998776555443 335789999998888865 55566555 45553333 2488999
Q ss_pred HHhccc
Q 042742 354 AFMSYE 359 (834)
Q Consensus 354 A~L~~~ 359 (834)
|++.+.
T Consensus 415 aa~~a~ 420 (471)
T PRK10640 415 NIGIQL 420 (471)
T ss_pred HHHHHH
Confidence 988753
No 102
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=46.65 E-value=23 Score=39.39 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=31.6
Q ss_pred CcEEEeCCccccchhHHHHHhCC-Ccccchh-hHHHHHHHHHH
Q 042742 119 GGIHATGGGAYKFADLFKERLGV-SLDKEDE-MDCLVAGANFL 159 (834)
Q Consensus 119 ~~i~~TGGGA~k~~~~~~~~lgi-~~~k~dE-m~cli~G~~fL 159 (834)
..|.+|||||.-+++.+++.++- .+..+++ ..+.++|-..+
T Consensus 275 ~~Iil~GGGa~ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~~ 317 (320)
T TIGR03739 275 QNIVLVGGGAFLFKKAVKAAFPKHRIVEVDEPMFANVRGFQIA 317 (320)
T ss_pred cEEEEeCCcHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHHh
Confidence 45999999999999999888764 4445666 67888886543
No 103
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=39.86 E-value=1.4e+02 Score=29.36 Aligned_cols=94 Identities=20% Similarity=0.133 Sum_probs=59.1
Q ss_pred CCceEEEEeccceeEEEEEeecCCCccchhhhhhhhhhccccCCCCcCCCCCCCeEEEeEeecCCHHHHHHHHHhccccc
Q 042742 39 DISHLALDIGGSLIKLVYFSRHEDQSIDDKRKKTIKERLGISNGNRRSYPILGGRLHFVKFETTKISECLDFIHSKQLHR 118 (834)
Q Consensus 39 ~~~~~giDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~~i~~~l~fi~~~~~~~ 118 (834)
..+.+|||.|-.-+=++...+... ... .-+.+....+ ...++...+++++..+.
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~~~--~a~----------------------pl~~i~~~~~-~~~~~~l~~~i~~~~i~- 56 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPLGG--TAQ----------------------PLETIKRNNG-TPDWDRLEKLIKEWQPD- 56 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCCCC--EEc----------------------CEEEEEcCCC-chHHHHHHHHHHHhCCC-
Confidence 345899999999999998553211 000 0112221111 12367777888777543
Q ss_pred CcEEEeC-----Ccc--------ccchhHHHHHhCCCcccchhhHHHHHHHHHHH
Q 042742 119 GGIHATG-----GGA--------YKFADLFKERLGVSLDKEDEMDCLVAGANFLL 160 (834)
Q Consensus 119 ~~i~~TG-----GGA--------~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl 160 (834)
..+-| .|. .+|.+.+++.+++++...||=-+....-..|.
T Consensus 57 --~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~TT~~A~~~l~ 109 (138)
T PRK00109 57 --GLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDERLSTVEAERALA 109 (138)
T ss_pred --EEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcCHHHHHHHHH
Confidence 23334 442 38889998888999999999777777766663
No 104
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=38.76 E-value=92 Score=35.73 Aligned_cols=139 Identities=18% Similarity=0.096 Sum_probs=74.4
Q ss_pred ccEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCC----------CCCCCCCCC
Q 042742 186 FPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDN----------RDHRHIGLS 255 (834)
Q Consensus 186 ~PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~----------~dy~~~GL~ 255 (834)
.+-.++|||.=-.|-.+..+++ ..=--|+=|-.-+=..++..+| .+||+=-++|++|.. ..|-..--|
T Consensus 158 ~~~~~lNIGGIaNiT~l~~~~~-~~~fDtGPGN~liD~~~~~~~~-~~yD~~G~~A~~G~v~~~ll~~ll~~pyf~~~pP 235 (364)
T PF03702_consen 158 KPRAVLNIGGIANITFLPPGGD-VIGFDTGPGNMLIDAWIQRHTG-LPYDKDGEWAASGKVNEELLDRLLSHPYFKRPPP 235 (364)
T ss_dssp S-EEEEEESSEEEEEEE-TTS---EEEEEEESSHHHHHHHHHHCS--SS-GGGHHHHCS---HHHHHHHHTSHHHHS-SS
T ss_pred CCEEEEecCCceEEEEecCCCC-ceeeccCcHHHHHHHHHHHHhC-CCcCcCcHhhCcCCCCHHHHHHHhcCccccCCCC
Confidence 5679999994333444443222 1111233344344456777888 779999999999986 123222244
Q ss_pred cccccccccccccccccccCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHH
Q 042742 256 ASTIASSFGKTISDKKELADY--RPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAV 330 (834)
Q Consensus 256 ~d~iASsFGK~~~~~~~~~~~--~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai 330 (834)
.++----||-..... ..... ++||+.+.|....+..|.+---.. ....++||++|+-.+|..+ |+.|+..+
T Consensus 236 KStGrE~F~~~~l~~-~l~~~~~~~~D~~aTlt~~TA~sI~~~i~~~--~~~~~~v~v~GGGa~N~~L-~~~L~~~l 308 (364)
T PF03702_consen 236 KSTGREDFGLEWLQQ-ILDKFSLSPEDILATLTEFTAQSIADAIRRF--PPQPDEVYVCGGGARNPFL-MERLQERL 308 (364)
T ss_dssp ----TTTSSHHHHHH-HCTTSTT-HHHHHHHHHHHHHHHHHHHHHHH---TT-EEEEEESGGGG-HHH-HHHHHHH-
T ss_pred CcCCccccCHHHHHH-HHHhcCCChHHHHHHHHHHHHHHHHHHHHhc--CCCCceEEEECCCcCCHHH-HHHHHhhC
Confidence 433334555321110 11122 699999999999999998764422 2236789999999998865 54566544
No 105
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=34.36 E-value=35 Score=35.93 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=24.9
Q ss_pred cCCCCCCCCceEEEEeccceeEEEEEeec
Q 042742 32 LLPNQSDDISHLALDIGGSLIKLVYFSRH 60 (834)
Q Consensus 32 ~l~~~~~~~~~~giDIGGSL~Kivy~~~~ 60 (834)
.+|.-.|.-..+|||+|||.-+++.++-.
T Consensus 55 ~~P~G~E~G~~LalDlGGTnlRv~~V~L~ 83 (206)
T PF00349_consen 55 SLPTGNEKGDFLALDLGGTNLRVALVELS 83 (206)
T ss_dssp SSTTSTTEEEEEEEEESSSSEEEEEEEEE
T ss_pred cCCCCCCCceEEEEeecCcEEEEEEEEEc
Confidence 37777788889999999999999998744
No 106
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=33.99 E-value=9.7e+02 Score=29.41 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=27.7
Q ss_pred CCCCCccCCCCCCCCceEEEEeccceeEEEEEe
Q 042742 26 VKNPTILLPNQSDDISHLALDIGGSLIKLVYFS 58 (834)
Q Consensus 26 ~~~~~i~l~~~~~~~~~~giDIGGSL~Kivy~~ 58 (834)
.+++..+.|+.-...+.+-||||=|-+|.+.++
T Consensus 324 ~~~~~~~~~~~~~~~~~LliD~GNTriKwa~~~ 356 (592)
T PRK13325 324 SDDRPVSVPKRRDSERFLLLDGGNSRLKWAWVE 356 (592)
T ss_pred ecCCcccCCCCCCCceEEEEEcCcCceeEEEEc
Confidence 344667788877888999999999999999877
No 107
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=32.27 E-value=8.5e+02 Score=28.21 Aligned_cols=174 Identities=19% Similarity=0.198 Sum_probs=101.2
Q ss_pred ccchhHHHHHhCCCcccchhhHHHHHHHHHHHhcccccceEeecCceeeeecCCCCCccEEEEEcCCceE-EEEEcCCCc
Q 042742 129 YKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDTNDLFPYLLVNIGSGVS-MIKVDGDGK 207 (834)
Q Consensus 129 ~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~~~~~e~f~~~~~~~~~~~~~~~~~~PyLlVNIGSGvS-iikV~~~~~ 207 (834)
..|+.-+-..+..++.-+--|++|..-+.-.. +..-|||+.+=+-.|=. ++.+++.++
T Consensus 123 l~fA~glA~~l~kPlipVHHMeAHAL~~rl~~---------------------~~v~FPFl~lLvSGGH~llvla~~~~~ 181 (405)
T KOG2707|consen 123 LSFAKGLAVKLQKPLIPVHHMEAHALSIRLVD---------------------DSVRFPFLALLVSGGHTLLVLANGVGD 181 (405)
T ss_pred HHHHHHHHHhccCCccchhHHHHhHHHHHhcc---------------------CCcCCceeeEeeeCCceEEEEeccccc
Confidence 45666677778889999999999987665321 24458998887766666 677778899
Q ss_pred eEEecccc-c-CchhHHHHHHhhcCC------CCHHH-HHHHhcCCCC-CCCC-CCCCCcccccc-cccccccc------
Q 042742 208 FERVSGTN-V-GGGTYWGLGRLLTKC------KSFDE-LLELSQRGDN-RDHR-HIGLSASTIAS-SFGKTISD------ 269 (834)
Q Consensus 208 f~RvgGts-i-GGGTf~GL~~LLtg~------~~fde-il~LA~~Gd~-~dy~-~~GL~~d~iAS-sFGK~~~~------ 269 (834)
|+-+|-|. + =|=.|=-.++.|-=. .+-+. +-.+|++|+. ..|. ++.|+-.-=|+ ||.-+...
T Consensus 182 ~~llg~TvDiApGe~lDK~ar~Lgl~~~~e~~~~~g~aie~la~~~s~~~~l~~piPL~~~~~~nFSFsglk~~~~~~i~ 261 (405)
T KOG2707|consen 182 HELLGQTVDIAPGEALDKCARRLGLLGHPEDARSGGKAIEHLANRASADLHLKFPIPLKNVKKCNFSFSGLKTSYRRIIE 261 (405)
T ss_pred eeeeecccccchHHHHHHHHHHhcCCCCccchhhhhhHHHHHHhccCccccccCCCCccccccCCccHHHHHHHHHHHHH
Confidence 99999884 2 122333333333111 11122 2234566655 2221 11222211121 33322111
Q ss_pred --cc-cccCCChhHHHHHHHHHHHHHHHH---HHHHHHH--HcCCCEEEEecccccCcchhH
Q 042742 270 --KK-ELADYRPEDISLSLLRMISYNIGQ---ISYLNAL--RFGLKRIFFGGFFIRGHAYTM 323 (834)
Q Consensus 270 --~~-~~~~~~~eDia~SLl~mI~~nIgq---lA~l~A~--~~~i~~I~f~G~fi~~~~~~m 323 (834)
.+ +..--+..|+|++|.+.++.-|.+ .|+..+. -.+.+..|.+|+...|..+.-
T Consensus 262 k~~k~e~~~s~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~l~~~~~~~lV~SGGVAsN~yir~ 323 (405)
T KOG2707|consen 262 KLEKNEETLSEIADFAASLQRTVFRHISSKTHRAIKSLLLQPKNVKQLVISGGVASNQYIRG 323 (405)
T ss_pred HhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEcCCccchHHHHH
Confidence 11 011346799999999999988765 4555555 334566888999998887654
No 108
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=30.99 E-value=49 Score=36.59 Aligned_cols=43 Identities=30% Similarity=0.581 Sum_probs=36.5
Q ss_pred cEEEeCCcc--ccchhHHHHHhCCCcccch-hhHHHHHHHHHHHhc
Q 042742 120 GIHATGGGA--YKFADLFKERLGVSLDKED-EMDCLVAGANFLLKA 162 (834)
Q Consensus 120 ~i~~TGGGA--~k~~~~~~~~lgi~~~k~d-Em~cli~G~~fLl~~ 162 (834)
.|.+|||+| -.+.+.+++.+++++...+ =+.+++.|+.+++.+
T Consensus 283 ~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 283 GIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred CEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhC
Confidence 399999997 6778889999999877664 599999999999864
No 109
>PRK13327 pantothenate kinase; Reviewed
Probab=30.28 E-value=2.9e+02 Score=29.91 Aligned_cols=97 Identities=16% Similarity=0.115 Sum_probs=58.9
Q ss_pred ccEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCCCCCCCCCCCcc-ccccccc
Q 042742 186 FPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNRDHRHIGLSAS-TIASSFG 264 (834)
Q Consensus 186 ~PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~~dy~~~GL~~d-~iASsFG 264 (834)
.|.|+|+.||-++|=.|+.+++ +.||.-+=|= -+-+-+|..+ +.+ ||.. .-.+.||
T Consensus 112 ~~~lVVD~GTA~TiD~v~~~g~--~lGG~I~PG~-~lm~~aL~~~----------Ta~----------Lp~~~~~~~~~g 168 (242)
T PRK13327 112 APVLVVGVGTALTIDLLGADGL--HHGGRIAASP-TTMREALHAR----------AVQ----------LPASGGDYVEFA 168 (242)
T ss_pred CCEEEEEcCCceEEEEECCCCe--EEEEEECccH-HHHHHHHHHh----------hcc----------CCCCcccccccc
Confidence 4799999999999999987554 5566544332 2222222222 111 1110 0123344
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEeccc
Q 042742 265 KTISDKKELADYRPEDISLSLLRMISYNIGQISYLNALRFGL-KRIFFGGFF 315 (834)
Q Consensus 265 K~~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i-~~I~f~G~f 315 (834)
+ -+.+-|..+++.+...-|-.+.-...+.++- -+|+.||+.
T Consensus 169 ~----------~T~~ai~sG~~~~~~~~I~~~i~~~~~~~~~~~~vilTGG~ 210 (242)
T PRK13327 169 N----------DTDDALTSGCDGAAVALIERSLQHAHRSLGQPVRLLVHGGG 210 (242)
T ss_pred C----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 3 3567888999988887777776655666653 368888866
No 110
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=29.49 E-value=5.5e+02 Score=28.28 Aligned_cols=76 Identities=13% Similarity=-0.077 Sum_probs=45.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCE-EEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCc
Q 042742 276 YRPEDISLSLLRMISYNIGQISYLNALRFG-------LKR-IFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEG 347 (834)
Q Consensus 276 ~~~eDia~SLl~mI~~nIgqlA~l~A~~~~-------i~~-I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~g 347 (834)
.+.+++. .++.-....|.+...-.-+..+ +++ |+.+|+-.+-+.+... ++..+ +.++....++.
T Consensus 244 i~~~~~~-e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~-l~~~~------~~~v~~~~~p~ 315 (335)
T PRK13930 244 ISSEEVR-EALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKL-LSEET------GLPVHIAEDPL 315 (335)
T ss_pred ECHHHHH-HHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHH-HHHHH------CCCceecCCHH
Confidence 3456654 3444444444444332222222 245 9999988877766553 54444 35555667889
Q ss_pred hhhHHHHHhccc
Q 042742 348 FLGALGAFMSYE 359 (834)
Q Consensus 348 y~GAlGA~L~~~ 359 (834)
.+-|+||+....
T Consensus 316 ~ava~Ga~~~~~ 327 (335)
T PRK13930 316 TCVARGTGKALE 327 (335)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 111
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=28.96 E-value=8.8e+02 Score=29.54 Aligned_cols=79 Identities=11% Similarity=-0.020 Sum_probs=54.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccC-CchhhHHH
Q 042742 275 DYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRH-EGFLGALG 353 (834)
Q Consensus 275 ~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h-~gy~GAlG 353 (834)
.....|+|+|+-.-.-.-+-.++--+-+..|..++.++|+..-|-...-..+.... ..+++...- +.==+|+|
T Consensus 255 ~~~~~diAasaQ~~lE~l~l~~~~~~~~~~g~~~L~~AGGVAlNv~~N~~~l~~~~------f~dlfV~Pa~gD~G~AvG 328 (555)
T COG2192 255 TERAADIAASAQAYLEELVLEMLRYLREETGEDNLALAGGVALNVKANGKLLRRGL------FEDLFVQPAMGDAGLAVG 328 (555)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceEEccceeeeeeehHhHhhccc------CceeEecCCCCCcchHHH
Confidence 45789999998888777777777777777789999999999888766533443211 123433333 33446999
Q ss_pred HHhccc
Q 042742 354 AFMSYE 359 (834)
Q Consensus 354 A~L~~~ 359 (834)
|++...
T Consensus 329 AAl~~~ 334 (555)
T COG2192 329 AALAVK 334 (555)
T ss_pred HHHHHH
Confidence 999764
No 112
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=28.16 E-value=60 Score=36.30 Aligned_cols=43 Identities=23% Similarity=0.454 Sum_probs=36.4
Q ss_pred cEEEeCCccc--cchhHHHHHhCCCcccc-hhhHHHHHHHHHHHhc
Q 042742 120 GIHATGGGAY--KFADLFKERLGVSLDKE-DEMDCLVAGANFLLKA 162 (834)
Q Consensus 120 ~i~~TGGGA~--k~~~~~~~~lgi~~~k~-dEm~cli~G~~fLl~~ 162 (834)
+|.+|||||. -+.+.+++.+++++... +=++|++.|+--.+++
T Consensus 281 gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~~~ 326 (335)
T PRK13929 281 GVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSLEV 326 (335)
T ss_pred CEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHHHC
Confidence 4999999974 67888999999987765 6789999999988764
No 113
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=27.85 E-value=43 Score=39.50 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=16.5
Q ss_pred CCceEEEEeccceeEEEEE
Q 042742 39 DISHLALDIGGSLIKLVYF 57 (834)
Q Consensus 39 ~~~~~giDIGGSL~Kivy~ 57 (834)
.+-.+|||||.|+|++|+.
T Consensus 2 ~i~SVGIDIGTSTTQlvfS 20 (473)
T PF06277_consen 2 EILSVGIDIGTSTTQLVFS 20 (473)
T ss_pred eeEEEEEeecCCceeEEEE
Confidence 4557999999999999994
No 114
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=27.54 E-value=1.2e+02 Score=29.24 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=25.5
Q ss_pred HhhhcCCCcccchhhhhHHHHHHHHHHHcCCCcccHHHHHHHHHH
Q 042742 525 ARLMEEPAAYGKLGLANLLELREECLREFQFLDAYRSIKQRENEA 569 (834)
Q Consensus 525 ~~l~~~P~~~g~~~~r~l~~l~~~~l~~~g~~DPy~~~K~~~N~~ 569 (834)
++|.++++..+ +-.+.++|..|..|||...|+---..
T Consensus 46 ~dL~~nWeVla--------EpIQTvmRr~g~~~pYE~LK~lTRg~ 82 (115)
T PF08328_consen 46 EDLDENWEVLA--------EPIQTVMRRYGIPNPYEKLKELTRGK 82 (115)
T ss_dssp HHHCT-GGGGH--------HHHHHHHHHTT-SSHHHHHHHHHTTS
T ss_pred HHHHHCHHHHH--------HHHHHHHHHcCCCCHHHHHHHHHcCC
Confidence 34455555444 45789999999999999999866444
No 115
>PRK13326 pantothenate kinase; Reviewed
Probab=27.53 E-value=8.4e+02 Score=26.66 Aligned_cols=100 Identities=14% Similarity=0.215 Sum_probs=57.8
Q ss_pred ccEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCCCCCCCCCCCcccccccccc
Q 042742 186 FPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNRDHRHIGLSASTIASSFGK 265 (834)
Q Consensus 186 ~PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~~dy~~~GL~~d~iASsFGK 265 (834)
.|+++|..||-+.|=.|+.+++| .||.-+= |--+-+-+|..+ +.+=-..+ +..|. +.+|+
T Consensus 126 ~~~iVID~GTA~T~D~V~~~g~~--lGG~I~P-Gi~l~~~AL~~~----------TA~Lp~v~---l~~p~----~~iG~ 185 (262)
T PRK13326 126 NDALVVDLGTACTIFAVSRQDGI--LGGLING-GPFTNLNALLDN----------AYLLKDFN---LSVPK----NLLGL 185 (262)
T ss_pred CCEEEEECCCceEEEEEcCCCcE--EEEEECc-cHHHHHHHHHHh----------HhcCCCCc---cCCCC----ccccC
Confidence 47999999999999999886654 5665433 332323233221 11100000 01111 22343
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEeccc
Q 042742 266 TISDKKELADYRPEDISLSLLRMISYNIGQISYLNALRFGL-KRIFFGGFF 315 (834)
Q Consensus 266 ~~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i-~~I~f~G~f 315 (834)
-+.+-|-.+++.+...-|-.+.-...+.++- -.|+.||+.
T Consensus 186 ----------nT~~aI~sGi~~g~~~~I~g~i~~~~~e~~~~~~vv~TGG~ 226 (262)
T PRK13326 186 ----------STSDSVNSGVIYQYKYLIEGVYHDLKRNYDREFNLIITGGN 226 (262)
T ss_pred ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 2456677888887777777666666666653 358888875
No 116
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=27.37 E-value=77 Score=31.96 Aligned_cols=45 Identities=22% Similarity=0.386 Sum_probs=30.0
Q ss_pred ccccCcEEEeCCcc--ccchhHHHHHhCCCcccchhhHHHHHHHHHH
Q 042742 115 QLHRGGIHATGGGA--YKFADLFKERLGVSLDKEDEMDCLVAGANFL 159 (834)
Q Consensus 115 ~~~~~~i~~TGGGA--~k~~~~~~~~lgi~~~k~dEm~cli~G~~fL 159 (834)
+.....|.++|||+ --+.+.+.+.+|.+|.+.+.-++-+.|+-.+
T Consensus 147 ~~~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~~e~~a~GaA~~ 193 (198)
T PF02782_consen 147 GIPIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEVEEASALGAALL 193 (198)
T ss_dssp TSCESEEEEESGGGGSHHHHHHHHHHHTSEEEEESSSTHHHHHHHHH
T ss_pred cccceeeEeccccccChHHHHHHHHHhCCceEeCCCCchHHHHHHHH
Confidence 34445699999996 3345556778899988876555555555444
No 117
>PRK13322 pantothenate kinase; Reviewed
Probab=27.37 E-value=3.9e+02 Score=28.83 Aligned_cols=97 Identities=23% Similarity=0.242 Sum_probs=58.6
Q ss_pred ccEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCCCCCCCCCCCcccc---ccc
Q 042742 186 FPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNRDHRHIGLSASTI---ASS 262 (834)
Q Consensus 186 ~PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~~dy~~~GL~~d~i---ASs 262 (834)
.|+|+|+.||-++|=.|+.+++ +.||. |.=|--+.+-+|..++. + ||.... ...
T Consensus 116 ~~~lViD~GTA~TiD~v~~~g~--~~GG~-I~PG~~l~~~aL~~~Ta----------~----------Lp~v~~~~~~~~ 172 (246)
T PRK13322 116 NACLVIDCGTAVTIDLVDADGQ--HLGGY-ICPGLYLMRDALRTHTR----------R----------IRYDDGTADSLS 172 (246)
T ss_pred CCEEEEEcCCeeEEEEEcCCCc--EeeeE-EccCHHHHHHHHHhhhh----------c----------CCCCcccCCCCC
Confidence 4699999999999999986554 45555 33344344444433321 1 111000 112
Q ss_pred ccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEeccc
Q 042742 263 FGKTISDKKELADYRPEDISLSLLRMISYNIGQISYLNALRFGL-KRIFFGGFF 315 (834)
Q Consensus 263 FGK~~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i-~~I~f~G~f 315 (834)
||+ -+.+-|..+++.+...-|-.+.-...+.++- -+|+.||+.
T Consensus 173 ~g~----------~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~~~vilTGG~ 216 (246)
T PRK13322 173 PGR----------NTVDAVERGCLLMLRGFIESQLEQARELWGPDFEIFLTGGD 216 (246)
T ss_pred CCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 332 3567788888888888887776666666553 368888866
No 118
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=25.69 E-value=96 Score=37.15 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=39.3
Q ss_pred HHHHHHhcccccCcEEEeCCcc--ccchhHHHHHhCCCcccchhhHHHHHHHHHHHh
Q 042742 107 CLDFIHSKQLHRGGIHATGGGA--YKFADLFKERLGVSLDKEDEMDCLVAGANFLLK 161 (834)
Q Consensus 107 ~l~fi~~~~~~~~~i~~TGGGA--~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~ 161 (834)
+++-+++.+.....|.++|||| --+.+++-+.+|++|.+.++=++-..|+-.|..
T Consensus 433 ~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~alGaA~lA~ 489 (541)
T TIGR01315 433 IVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYVNEAVLHGAAMLGA 489 (541)
T ss_pred HHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecChhHHHHHHHHHHHH
Confidence 3444444444445599999994 445566778899999998888888899888763
No 119
>PRK13324 pantothenate kinase; Reviewed
Probab=25.22 E-value=6.9e+02 Score=27.26 Aligned_cols=101 Identities=18% Similarity=0.146 Sum_probs=57.6
Q ss_pred ccEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCCCCCCCCCCCcccccccccc
Q 042742 186 FPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNRDHRHIGLSASTIASSFGK 265 (834)
Q Consensus 186 ~PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~~dy~~~GL~~d~iASsFGK 265 (834)
.|.++|+.||-++|=.|+.++. ++||.- -=|.-+.+-+|..++. +=...+ +..|. +..|+
T Consensus 124 ~~~iViD~GTA~T~d~v~~~g~--~~GG~I-~PG~~l~~~aL~~~Ta----------~Lp~v~---~~~~~----~~~g~ 183 (258)
T PRK13324 124 KDLLIIDLGTATTFDLVTKDKK--YLSGSI-MPGVKLSLNALCQGAS----------QLSSVT---IVKPE----VAIGY 183 (258)
T ss_pred CCEEEEEcCCceEEEEEcCCCe--EEEEEE-CccHHHHHHHHHHHHh----------cCCCCC---ccCCC----CcCCC
Confidence 5899999999999999987554 456553 3344444444433321 100000 00000 11232
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEecccc
Q 042742 266 TISDKKELADYRPEDISLSLLRMISYNIGQISYLNALRFGL-KRIFFGGFFI 316 (834)
Q Consensus 266 ~~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i-~~I~f~G~fi 316 (834)
-+.+-|..+++.+...-|-.+.-...+.++- -+|+.||+..
T Consensus 184 ----------nT~~ai~sG~~~g~~~~i~~~~~~~~~~~~~~~~vi~TGG~a 225 (258)
T PRK13324 184 ----------DTKTNIRSGLYYGHLGALKELKRRSVEEFGSPVYTIATGGFA 225 (258)
T ss_pred ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCh
Confidence 2456677788877777666665555566653 3588888763
No 120
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=24.88 E-value=7.5e+02 Score=30.37 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=33.8
Q ss_pred CCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHHHHHhccc
Q 042742 305 GLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAFMSYE 359 (834)
Q Consensus 305 ~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAlGA~L~~~ 359 (834)
.++.|+++|+..|.+.+.- .++. ++. ..+...-++.-+-|+||++.+.
T Consensus 328 ~i~~ViLvGGssriP~v~~-~l~~---~fg---~~~~~~~npdeaVA~GAAi~a~ 375 (616)
T PRK05183 328 EVKEVVMVGGSTRVPLVRE-AVGE---FFG---RTPLTSIDPDKVVAIGAAIQAD 375 (616)
T ss_pred cCCEEEEECCcccChHHHH-HHHH---Hhc---cCcCcCCCchHHHHHHHHHHHH
Confidence 4678999999999886554 3433 232 2334456899999999998864
No 121
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=24.29 E-value=1.1e+02 Score=34.65 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=32.0
Q ss_pred CcEEEeCCccccchhHHHHHhCCCcccchhhHHHHHHHHHHHh
Q 042742 119 GGIHATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLK 161 (834)
Q Consensus 119 ~~i~~TGGGA~k~~~~~~~~lgi~~~k~dEm~cli~G~~fLl~ 161 (834)
..|.+|||||.-+++.|++.++--..-.+=..+.++|...+-.
T Consensus 293 d~IiL~GGGA~ll~~~lk~~f~~~~~~~~p~~ANa~G~~~~g~ 335 (344)
T PRK13917 293 DRVIVTGGGANIFFDSLSHWYSDVEKADESQFANVRGYYKYGE 335 (344)
T ss_pred CEEEEECCcHHHHHHHHHHHcCCeEEcCChHHHHHHHHHHHHH
Confidence 3499999999999999999887533334456688888776654
No 122
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.94 E-value=88 Score=38.77 Aligned_cols=20 Identities=20% Similarity=0.576 Sum_probs=17.5
Q ss_pred ceEEEEeccceeEEEEEeec
Q 042742 41 SHLALDIGGSLIKLVYFSRH 60 (834)
Q Consensus 41 ~~~giDIGGSL~Kivy~~~~ 60 (834)
-.||||+|||.|=.|+++..
T Consensus 3 ~~iGID~GGTfTDaV~~~~~ 22 (674)
T COG0145 3 LRIGIDVGGTFTDAVLLDED 22 (674)
T ss_pred eEEEEEcCCCcEeEEEEeCC
Confidence 37999999999999998843
No 123
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=23.74 E-value=1.8e+02 Score=33.77 Aligned_cols=129 Identities=19% Similarity=0.197 Sum_probs=77.0
Q ss_pred cEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHh-hcCCCCHHHHHHHhcC-CCC------CCCC---CCCCC
Q 042742 187 PYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRL-LTKCKSFDELLELSQR-GDN------RDHR---HIGLS 255 (834)
Q Consensus 187 PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~L-Ltg~~~fdeil~LA~~-Gd~------~dy~---~~GL~ 255 (834)
-.|..-+|+|-|+-.|.++.++ -||+|=-.+-||+.= -+|.-|+.=+.-|+++ |-. .-+. -+||+
T Consensus 201 ~~I~~HLGNGASicAiknGkSv----DTSMGfTPLeGl~MGTRsGdiDP~ii~~l~~~~~~s~~~i~~~LNkkSGllGlS 276 (396)
T COG0282 201 NLITCHLGNGASICAIKNGKSV----DTSMGFTPLEGLMMGTRSGDIDPGIILYLMEQEGMSAEEIDTLLNKKSGLLGLS 276 (396)
T ss_pred CEEEEEecCchhhhhhhCCeee----ccCCCCCcccceeccCCCCCCChHHHHHHHHhcCCCHHHHHHHHhhhccccccc
Confidence 3678889999999888864222 177887777776432 2344455555555532 222 0011 22342
Q ss_pred cccccccccccccccccccCCChhHHHHHHHHHHHHHHH-HHHHHHHHHcCCCEEEEecccccCcchhHHHHH
Q 042742 256 ASTIASSFGKTISDKKELADYRPEDISLSLLRMISYNIG-QISYLNALRFGLKRIFFGGFFIRGHAYTMDTIS 327 (834)
Q Consensus 256 ~d~iASsFGK~~~~~~~~~~~~~eDia~SLl~mI~~nIg-qlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls 327 (834)
+ +.|.|=.+. + .....++ |+--+.|.++.|. .++...|...+++-|+|||+.=.|.+..-+.+.
T Consensus 277 g--~ssD~R~l~---~--~~~~g~~-A~lA~~~f~~Ri~kyIg~y~a~L~glDaiVFTaGIGENs~~iR~~v~ 341 (396)
T COG0282 277 G--LSSDMRDLE---E--AAAEGNE-AKLALDMFVYRIAKYIGSYAAALGGLDALVFTAGIGENSALVRELVC 341 (396)
T ss_pred c--ccchHHHHH---H--HhccCch-HHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCccccCcHHHHHHHH
Confidence 1 111121111 1 0112233 8888999999987 467777888899999999998788776554443
No 124
>PLN02666 5-oxoprolinase
Probab=22.98 E-value=88 Score=41.55 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=0.0
Q ss_pred eEEEEeccceeEEEEEeecCCCccchhhhhhhhhhccccCCCCcCCCCCCCeEEEeEeecC
Q 042742 42 HLALDIGGSLIKLVYFSRHEDQSIDDKRKKTIKERLGISNGNRRSYPILGGRLHFVKFETT 102 (834)
Q Consensus 42 ~~giDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t~ 102 (834)
+||||+|||.|-+|.+.+. +++++..|-+|+
T Consensus 11 rigIDvGGTFTD~v~~~~~------------------------------~~~~~~~K~~st 41 (1275)
T PLN02666 11 RFCIDRGGTFTDVYAEVPG------------------------------GSDFRVLKLLSV 41 (1275)
T ss_pred EEEEECCcCCEeEEEEecC------------------------------CCeEEEEEeCCC
No 125
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=22.97 E-value=1.4e+02 Score=30.05 Aligned_cols=31 Identities=35% Similarity=0.604 Sum_probs=24.1
Q ss_pred CCceEEEEe---cCCCchhhhchHHHHHHHHhCCCEEEE
Q 042742 656 PHKRALLFV---DNSGADVVLGMLPLARELLRRGTEVVL 691 (834)
Q Consensus 656 ~~k~vl~~~---DNAG~EIV~DllpLa~eLl~~G~kVil 691 (834)
+.++|++|| .|.| -++. .||+|.++|.+|++
T Consensus 24 ~~~~v~il~G~GnNGg----Dgl~-~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGG----DGLV-AARHLANRGYNVTV 57 (169)
T ss_dssp TT-EEEEEE-SSHHHH----HHHH-HHHHHHHTTCEEEE
T ss_pred CCCeEEEEECCCCChH----HHHH-HHHHHHHCCCeEEE
Confidence 467899998 4555 5677 99999999999887
No 126
>PRK07890 short chain dehydrogenase; Provisional
Probab=22.86 E-value=3.7e+02 Score=27.79 Aligned_cols=35 Identities=34% Similarity=0.380 Sum_probs=27.4
Q ss_pred CceEEEEecCCCchhhhchHHHHHHHHhCCCEEEEEecCc
Q 042742 657 HKRALLFVDNSGADVVLGMLPLARELLRRGTEVVLVANSL 696 (834)
Q Consensus 657 ~k~vl~~~DNAG~EIV~DllpLa~eLl~~G~kVil~vK~~ 696 (834)
.++++|..-+.| ++.- ++++|+++|.+|+++.+..
T Consensus 5 ~k~vlItGa~~~----IG~~-la~~l~~~G~~V~~~~r~~ 39 (258)
T PRK07890 5 GKVVVVSGVGPG----LGRT-LAVRAARAGADVVLAARTA 39 (258)
T ss_pred CCEEEEECCCCc----HHHH-HHHHHHHcCCEEEEEeCCH
Confidence 356666666555 6887 9999999999999998754
No 127
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=22.41 E-value=1e+03 Score=26.87 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=29.6
Q ss_pred HcCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHHHHHhcc
Q 042742 303 RFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAFMSY 358 (834)
Q Consensus 303 ~~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAlGA~L~~ 358 (834)
...+++|+++|+-.+- ....+.. .| . ++..+.++.|+=|.|.+..+
T Consensus 289 ~~~~d~IiL~GGGA~l---l~~~lk~---~f-~---~~~~~~~p~~ANa~G~~~~g 334 (344)
T PRK13917 289 INSFDRVIVTGGGANI---FFDSLSH---WY-S---DVEKADESQFANVRGYYKYG 334 (344)
T ss_pred cCCCCEEEEECCcHHH---HHHHHHH---Hc-C---CeEEcCChHHHHHHHHHHHH
Confidence 3477889997754432 1122322 22 2 34788999999999998755
No 128
>PRK08628 short chain dehydrogenase; Provisional
Probab=21.59 E-value=4.3e+02 Score=27.45 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=28.9
Q ss_pred CceEEEEecCCCchhhhchHHHHHHHHhCCCEEEEEecCcc
Q 042742 657 HKRALLFVDNSGADVVLGMLPLARELLRRGTEVVLVANSLP 697 (834)
Q Consensus 657 ~k~vl~~~DNAG~EIV~DllpLa~eLl~~G~kVil~vK~~P 697 (834)
.++++|..-+.| ++.- ++++|+++|.+|++..+..+
T Consensus 7 ~~~ilItGasgg----iG~~-la~~l~~~G~~v~~~~r~~~ 42 (258)
T PRK08628 7 DKVVIVTGGASG----IGAA-ISLRLAEEGAIPVIFGRSAP 42 (258)
T ss_pred CCEEEEeCCCCh----HHHH-HHHHHHHcCCcEEEEcCChh
Confidence 457777776666 6887 89999999999999987655
No 129
>PRK13329 pantothenate kinase; Reviewed
Probab=21.52 E-value=7e+02 Score=26.99 Aligned_cols=97 Identities=19% Similarity=0.181 Sum_probs=55.7
Q ss_pred ccEEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCCCCCCCCCCCcc-ccccccc
Q 042742 186 FPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNRDHRHIGLSAS-TIASSFG 264 (834)
Q Consensus 186 ~PyLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~~dy~~~GL~~d-~iASsFG 264 (834)
.|.|+|+.||-++|=.|+.+++ +.||--+=|= -+-+-+| .+-+.+ ||.. .-.+.+|
T Consensus 119 ~~~lViD~GTA~TiD~v~~~g~--~lGG~I~PGl-~l~~~aL----------~~~Ta~----------Lp~~~~~~~~~g 175 (249)
T PRK13329 119 RPCLVVMVGTAVTVDALDADGE--FLGGLILPGH-GLMLRAL----------ESGTAG----------LHVPTGEVREFP 175 (249)
T ss_pred CCEEEEECCCceeEEEEcCCCc--EEEEEECcCH-HHHHHHH----------Hhhhhc----------CCCCCCccccCC
Confidence 4799999999999999987553 5566533321 1111111 111111 2210 0012233
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEeccc
Q 042742 265 KTISDKKELADYRPEDISLSLLRMISYNIGQISYLNALRFGL-KRIFFGGFF 315 (834)
Q Consensus 265 K~~~~~~~~~~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i-~~I~f~G~f 315 (834)
+ -+.+-|..++++++..-|-.+.-...+..+. -+|+.||+.
T Consensus 176 ~----------~T~~ai~sG~~~g~~~~I~~~i~~~~~~~~~~~~vilTGGd 217 (249)
T PRK13329 176 T----------NTSDALTSGGTQAIAGAVERMFRHLAQHCGAEPECLLTGGA 217 (249)
T ss_pred C----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 2 3567788888888877777666555555554 368888876
No 130
>PF02093 Gag_p30: Gag P30 core shell protein; InterPro: IPR003036 P30 is essential for viral assembly []. Cleavage of P70 in vitro can be accompanied by a shift from a concentrically coiled internal strand ("immature") to a collapsed ("mature") form of the virus core [].; GO: 0019068 virion assembly; PDB: 3BP9_U 1U7K_D 2Y4Z_A 1BM4_A.
Probab=21.49 E-value=1.4e+02 Score=31.79 Aligned_cols=110 Identities=21% Similarity=0.275 Sum_probs=34.0
Q ss_pred ccCCCcCCCCCCCCCccCCCChHHhhHHHHhhhccHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCcccc
Q 042742 457 EVFPLLADPKMYEPNTIDLADRSELEYWFTVLSEHLPDLVDKAVASEGGTDDAKRRGDAFARAFSAHLARLMEEPAAYGK 536 (834)
Q Consensus 457 ~~~pll~~~~~y~p~t~d~~d~~~r~yw~~~~~~~i~~~~~~a~~~~~~~~d~~~ra~~f~~~~~~~L~~l~~~P~~~g~ 536 (834)
..||+- || -+|..+++.|+ |+..+..|+-+=+++|.. |...+. .+..+...|.....
T Consensus 85 ~~fP~~-~P------~WD~Nt~~g~~-~L~~yrq~LL~GLr~aa~----------Kp~Nls-----Kv~~v~Qg~~EsPs 141 (211)
T PF02093_consen 85 EQFPST-DP------NWDPNTAEGRE-ALRLYRQCLLAGLRGAAR----------KPTNLS-----KVREVTQGPNESPS 141 (211)
T ss_dssp HHS-SS------------TTSHHHHH-HHHHHHHHHHHHHHHHHH----------H----------S--TTTTTGGGHHH
T ss_pred hhCCCC-CC------CCCCCcHHHHH-HHHHHHHHHHHHHHhcCC----------CCccHH-----HHHHHHhCCCCCHH
Confidence 346655 65 35555677776 999999999998888842 212111 12222323332221
Q ss_pred hhhhhHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHh----HHHHHHHHhcCCh--HHHHHHHHH
Q 042742 537 LGLANLLELREECLREFQFLDAYRSIKQRENEASLAV----LPDLLVELDSMSK--ETRLLMLIE 595 (834)
Q Consensus 537 ~~~r~l~~l~~~~l~~~g~~DPy~~~K~~~N~~Al~~----l~~l~~~ld~~~~--~~~l~~lik 595 (834)
..|-||+| .+|.+-..||=....+..- ++.+ -|++.++|..++. ...+..+|+
T Consensus 142 ---~FLeRL~e-a~r~yTp~dP~~~~~~~~v--~~~Fi~QsapDIrkKLq~~eg~~~~~l~~Ll~ 200 (211)
T PF02093_consen 142 ---AFLERLRE-AYRKYTPFDPESPEGQASV--AMSFITQSAPDIRKKLQKLEGLQGKTLSELLK 200 (211)
T ss_dssp ---HHHHHHHH-HHHHTS-----------------------------------------------
T ss_pred ---HHHHHHHH-HHHhcCCCCCCCCccchhH--HHHHHHhccHHHHHHHHhhcCcccCCHHHHHH
Confidence 23345554 4555666788665554442 2333 3888888876542 233444443
No 131
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=21.39 E-value=1e+02 Score=32.85 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.7
Q ss_pred eEEEEeccceeEEEEEe
Q 042742 42 HLALDIGGSLIKLVYFS 58 (834)
Q Consensus 42 ~~giDIGGSL~Kivy~~ 58 (834)
..-|||||.-+|+..+.
T Consensus 93 ~~vidiGgqd~k~i~~~ 109 (248)
T TIGR00241 93 RGVIDIGGQDSKVIKID 109 (248)
T ss_pred CEEEEecCCeeEEEEEC
Confidence 46899999999999976
No 132
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=21.11 E-value=2.1e+02 Score=33.75 Aligned_cols=81 Identities=25% Similarity=0.243 Sum_probs=54.8
Q ss_pred eEEEEecCCCchh-hhchHHHHHHHHhCCCEEEEEecCccceeccchhhHHHHHHHHHhhChhHHHHHHhCCchhhhhhh
Q 042742 659 RALLFVDNSGADV-VLGMLPLARELLRRGTEVVLVANSLPALNDITAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMIN 737 (834)
Q Consensus 659 ~vl~~~DNAG~EI-V~DllpLa~eLl~~G~kVil~vK~~P~iNDvT~~Dl~~ll~~la~~~~~l~~A~~~G~~~~d~~~~ 737 (834)
+++|=...||..= ..-+- +++.|.++|.+|-= .|-+|=.=|.++..+
T Consensus 2 ~vvIAg~~SG~GKTTvT~g-lm~aL~~rg~~Vqp-fKvGPDYIDP~~H~~------------------------------ 49 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLG-LMRALRRRGLKVQP-FKVGPDYIDPGYHTA------------------------------ 49 (451)
T ss_pred ceEEecCCCCCcHHHHHHH-HHHHHHhcCCcccc-cccCCCccCchhhhH------------------------------
Confidence 4555566666321 11122 55899999988864 489996668888872
Q ss_pred ccCCCCCCCCCcceEEEeCCCCCCCcCcccCCHHHHHHh-----ccCcEEEEecCC
Q 042742 738 TLDGSKENSPSVPLMVVENGCGSPCIDLRQVSSELAAAA-----KNADLIILEGMG 788 (834)
Q Consensus 738 ~~~~~~~~~~~~~l~Vi~sG~~~pgldL~~vS~el~~~l-----~~ADLVI~KGmg 788 (834)
-+|.++.-+|.|-++++..+.+ +++|+.|+||+-
T Consensus 50 -----------------atG~~srNLD~~mm~~~~v~~~f~~~~~~adi~vIEGVM 88 (451)
T COG1797 50 -----------------ATGRPSRNLDSWMMGEEGVRALFARAAADADIAVIEGVM 88 (451)
T ss_pred -----------------hhCCccCCCchhhcCHHHHHHHHHHhcCCCCEEEEeecc
Confidence 2355566688888887765544 789999999953
No 133
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=21.01 E-value=5.5e+02 Score=29.64 Aligned_cols=138 Identities=17% Similarity=0.112 Sum_probs=79.5
Q ss_pred EEEEEcCCceEEEEEcCCCceEEecccccCchhHHHHHHhhcCCCCHHHHHHHhcCCCC----------CCCCCCCCCcc
Q 042742 188 YLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDN----------RDHRHIGLSAS 257 (834)
Q Consensus 188 yLlVNIGSGvSiikV~~~~~f~RvgGtsiGGGTf~GL~~LLtg~~~fdeil~LA~~Gd~----------~dy~~~GL~~d 257 (834)
-+++|||.=.-|-.+...+.=..---|+=|---+=..++.+++ ..||+=-++|++|.. ..|-+.--|++
T Consensus 161 ~~~lNiGGIaNiT~l~~~~~~~~afDtGPgN~liD~~~~~~~~-~~~D~~G~~A~~G~v~~~lL~~ll~~pff~~~pPKS 239 (365)
T PRK09585 161 RAVLNIGGIANITLLPPGGGPVIGFDTGPGNALIDAWIQRHGG-KPYDKDGAWAASGKVDEALLARLLAHPYFALPPPKS 239 (365)
T ss_pred eEEEecCCceEEEEecCCCCCeeEecCChhHHHHHHHHHHHhC-CCCCCCChHHhCCCCCHHHHHHHhcCccccCCCCCc
Confidence 4889999433344443321111111233344444466777777 479998999999986 22322222332
Q ss_pred ccccccccccccccccc--CCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccCcchhHHHHHHHH
Q 042742 258 TIASSFGKTISDKKELA--DYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAV 330 (834)
Q Consensus 258 ~iASsFGK~~~~~~~~~--~~~~eDia~SLl~mI~~nIgqlA~l~A~~~~i~~I~f~G~fi~~~~~~m~~ls~ai 330 (834)
+===.||.-... +..+ ..++||+.+.|....+..|.+--.... ...++|+.+|+-.+|.. -|+.|+..+
T Consensus 240 tgrE~F~~~~~~-~~l~~~~~s~~D~~aTlt~~TA~sI~~~~~~~~--~~~~~vlv~GGGa~N~~-Lm~~L~~~l 310 (365)
T PRK09585 240 TGRELFNLAWLE-RQLAGFGLSPEDVQATLTELTAASIARAVRRLP--PGPDELLVCGGGARNPT-LMERLAALL 310 (365)
T ss_pred cChhhcCHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcc--CCCCEEEEECCCcchHH-HHHHHHHhc
Confidence 222334332111 0111 258999999999999999988753221 23468999888888875 455676544
No 134
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=20.47 E-value=64 Score=37.55 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=15.4
Q ss_pred eEEEEeccceeEEEEEe
Q 042742 42 HLALDIGGSLIKLVYFS 58 (834)
Q Consensus 42 ~~giDIGGSL~Kivy~~ 58 (834)
.+|||||+|.||.|-+.
T Consensus 4 ~lGIDIGSTsTKaVVmd 20 (432)
T TIGR02259 4 FVGIDLGSTTTKAVLMD 20 (432)
T ss_pred EEEEEcCchhEEEEEEc
Confidence 58999999999998876
No 135
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=20.29 E-value=2.1e+02 Score=27.41 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=35.0
Q ss_pred EEEEeccceeEEEEEeecCCCccchhhhhhhhhhccccCCCCcCCCCCCCeEEEeEeec--CCHHHHHHHHHhcccccCc
Q 042742 43 LALDIGGSLIKLVYFSRHEDQSIDDKRKKTIKERLGISNGNRRSYPILGGRLHFVKFET--TKISECLDFIHSKQLHRGG 120 (834)
Q Consensus 43 ~giDIGGSL~Kivy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~f~t--~~i~~~l~fi~~~~~~~~~ 120 (834)
+|||+|-...=++++.+. +......+|+. ..+.++++|+++.+...-.
T Consensus 2 vGiDv~k~~~~v~v~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~ 51 (144)
T PF01548_consen 2 VGIDVSKDTHDVCVIDPN------------------------------GEKLRRFKFENDPAGLEKLLDWLASLGPVLVV 51 (144)
T ss_pred EEEEcccCeEEEEEEcCC------------------------------CcEEEEEEEeccccchhHHhhhhccccccccc
Confidence 799999887777765532 22455666766 6788899999887511111
Q ss_pred EEEeCC
Q 042742 121 IHATGG 126 (834)
Q Consensus 121 i~~TGG 126 (834)
+=+||+
T Consensus 52 ~E~tg~ 57 (144)
T PF01548_consen 52 MEATGG 57 (144)
T ss_pred cccccc
Confidence 445664
No 136
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=20.26 E-value=3.3e+02 Score=33.20 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=34.4
Q ss_pred cCCCEEEEecccccCcchhHHHHHHHHhhccCCCceEeeccCCchhhHHHHHhccc
Q 042742 304 FGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAFMSYE 359 (834)
Q Consensus 304 ~~i~~I~f~G~fi~~~~~~m~~ls~ai~fws~g~~~a~Fl~h~gy~GAlGA~L~~~ 359 (834)
..++.|+++|+..|.+.+.- .++. ++. .+++-.-++.-+-|.||++.+.
T Consensus 311 ~~id~ViLvGGssriP~V~~-~l~~---~f~---~~~~~~~npdeaVA~GAai~a~ 359 (599)
T TIGR01991 311 EEIKGVVLVGGSTRMPLVRR-AVAE---LFG---QEPLTDIDPDQVVALGAAIQAD 359 (599)
T ss_pred hhCCEEEEECCcCCChHHHH-HHHH---HhC---CCCCCCCCCcHHHHHHHHHHHH
Confidence 34678999999999887554 3433 232 2334456899999999999864
Done!