BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>042743
MKKTRKKVIFHASNDIDVGSEYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAA
NYLHT

High Scoring Gene Products

Symbol, full name Information P value
AT5G59140 protein from Arabidopsis thaliana 2.0e-08

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042743
        (65 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2168454 - symbol:AT5G59140 species:3702 "Arabi...   128  2.0e-08   1


>TAIR|locus:2168454 [details] [associations]
            symbol:AT5G59140 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0000394 "RNA splicing, via
            endonucleolytic cleavage and ligation" evidence=RCA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=RCA]
            [GO:0009062 "fatty acid catabolic process" evidence=RCA]
            InterPro:IPR016073 Pfam:PF03931 GO:GO:0005829 EMBL:CP002688
            GenomeReviews:BA000015_GR Gene3D:3.30.710.10 InterPro:IPR011333
            SUPFAM:SSF54695 GO:GO:0003746 GO:GO:0006511 EMBL:AB016890
            eggNOG:NOG298860 HOGENOM:HOG000216525 KO:K03872 OMA:PGQFSEN
            HSSP:Q03071 EMBL:AY045995 EMBL:AY096614 IPI:IPI00536842
            RefSeq:NP_568900.1 UniGene:At.6930 ProteinModelPortal:Q9FIG0
            SMR:Q9FIG0 IntAct:Q9FIG0 STRING:Q9FIG0 PaxDb:Q9FIG0 PRIDE:Q9FIG0
            EnsemblPlants:AT5G59140.1 GeneID:836032 KEGG:ath:AT5G59140
            TAIR:At5g59140 InParanoid:Q9FIG0 PhylomeDB:Q9FIG0
            ProtClustDB:CLSN2690048 ArrayExpress:Q9FIG0 Genevestigator:Q9FIG0
            Uniprot:Q9FIG0
        Length = 96

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 24/25 (96%), Positives = 25/25 (100%)

Query:    41 GKETDFHIEPELTLELMMAANYLHT 65
             GKET+FHIEPELTLELMMAANYLHT
Sbjct:    72 GKETEFHIEPELTLELMMAANYLHT 96


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       65        65   0.00091  102 3  11 22  0.39    28
                                                     29  0.46    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  492 (52 KB)
  Total size of DFA:  87 KB (2065 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.69u 0.17s 6.86t   Elapsed:  00:00:00
  Total cpu time:  6.69u 0.17s 6.86t   Elapsed:  00:00:00
  Start:  Fri May 10 22:09:58 2013   End:  Fri May 10 22:09:58 2013

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