BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042743
(65 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|18424201|ref|NP_568900.1| transcription elongation factor B, polypeptide 1 [Arabidopsis
thaliana]
gi|297790272|ref|XP_002863037.1| SKP1 family protein [Arabidopsis lyrata subsp. lyrata]
gi|297793455|ref|XP_002864612.1| SKP1 family protein [Arabidopsis lyrata subsp. lyrata]
gi|9759236|dbj|BAB09760.1| unnamed protein product [Arabidopsis thaliana]
gi|15028385|gb|AAK76669.1| putative elongin protein [Arabidopsis thaliana]
gi|20465563|gb|AAM20264.1| unknown protein [Arabidopsis thaliana]
gi|297308839|gb|EFH39296.1| SKP1 family protein [Arabidopsis lyrata subsp. lyrata]
gi|297310447|gb|EFH40871.1| SKP1 family protein [Arabidopsis lyrata subsp. lyrata]
gi|332009765|gb|AED97148.1| transcription elongation factor B, polypeptide 1 [Arabidopsis
thaliana]
Length = 96
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/25 (96%), Positives = 25/25 (100%)
Query: 41 GKETDFHIEPELTLELMMAANYLHT 65
GKET+FHIEPELTLELMMAANYLHT
Sbjct: 72 GKETEFHIEPELTLELMMAANYLHT 96
>gi|168023964|ref|XP_001764507.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684371|gb|EDQ70774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 101
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/25 (92%), Positives = 25/25 (100%)
Query: 41 GKETDFHIEPELTLELMMAANYLHT 65
GK+TDFHIEPE+TLELMMAANYLHT
Sbjct: 77 GKKTDFHIEPEMTLELMMAANYLHT 101
>gi|168065725|ref|XP_001784798.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663632|gb|EDQ50386.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 99
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/25 (88%), Positives = 25/25 (100%)
Query: 41 GKETDFHIEPELTLELMMAANYLHT 65
GKET+FHIEPE+TL+LMMAANYLHT
Sbjct: 75 GKETEFHIEPEITLDLMMAANYLHT 99
>gi|302780849|ref|XP_002972199.1| hypothetical protein SELMODRAFT_96367 [Selaginella
moellendorffii]
gi|302791489|ref|XP_002977511.1| hypothetical protein SELMODRAFT_106838 [Selaginella
moellendorffii]
gi|300154881|gb|EFJ21515.1| hypothetical protein SELMODRAFT_106838 [Selaginella
moellendorffii]
gi|300160498|gb|EFJ27116.1| hypothetical protein SELMODRAFT_96367 [Selaginella
moellendorffii]
Length = 99
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/25 (88%), Positives = 25/25 (100%)
Query: 41 GKETDFHIEPELTLELMMAANYLHT 65
GKET+FHIEPE+TLEL+MAANYLHT
Sbjct: 75 GKETEFHIEPEMTLELLMAANYLHT 99
>gi|255558940|ref|XP_002520493.1| Transcription elongation factor B polypeptide, putative [Ricinus
communis]
gi|223540335|gb|EEF41906.1| Transcription elongation factor B polypeptide, putative [Ricinus
communis]
Length = 98
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/25 (92%), Positives = 24/25 (96%)
Query: 41 GKETDFHIEPELTLELMMAANYLHT 65
GKET+F IEPELTLELMMAANYLHT
Sbjct: 74 GKETEFPIEPELTLELMMAANYLHT 98
>gi|351723207|ref|NP_001236759.1| uncharacterized protein LOC100500097 [Glycine max]
gi|255629123|gb|ACU14906.1| unknown [Glycine max]
Length = 98
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/25 (92%), Positives = 24/25 (96%)
Query: 41 GKETDFHIEPELTLELMMAANYLHT 65
GKET+F IEPELTLELMMAANYLHT
Sbjct: 74 GKETEFSIEPELTLELMMAANYLHT 98
>gi|224106387|ref|XP_002314149.1| predicted protein [Populus trichocarpa]
gi|222850557|gb|EEE88104.1| predicted protein [Populus trichocarpa]
Length = 98
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/25 (92%), Positives = 24/25 (96%)
Query: 41 GKETDFHIEPELTLELMMAANYLHT 65
GKET+F IEPELTLELMMAANYLHT
Sbjct: 74 GKETEFPIEPELTLELMMAANYLHT 98
>gi|449455078|ref|XP_004145280.1| PREDICTED: transcription elongation factor B polypeptide 1-like
[Cucumis sativus]
gi|449474021|ref|XP_004154051.1| PREDICTED: transcription elongation factor B polypeptide 1-like
[Cucumis sativus]
gi|449508510|ref|XP_004163332.1| PREDICTED: transcription elongation factor B polypeptide 1-like
[Cucumis sativus]
Length = 98
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/25 (92%), Positives = 24/25 (96%)
Query: 41 GKETDFHIEPELTLELMMAANYLHT 65
GKET+F IEPELTLELMMAANYLHT
Sbjct: 74 GKETEFPIEPELTLELMMAANYLHT 98
>gi|351724177|ref|NP_001235513.1| uncharacterized protein LOC100305702 [Glycine max]
gi|255626357|gb|ACU13523.1| unknown [Glycine max]
Length = 98
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/25 (92%), Positives = 24/25 (96%)
Query: 41 GKETDFHIEPELTLELMMAANYLHT 65
GKET+F IEPELTLELMMAANYLHT
Sbjct: 74 GKETEFPIEPELTLELMMAANYLHT 98
>gi|225434792|ref|XP_002282124.1| PREDICTED: transcription elongation factor B polypeptide 1 [Vitis
vinifera]
Length = 98
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/25 (88%), Positives = 24/25 (96%)
Query: 41 GKETDFHIEPELTLELMMAANYLHT 65
GK+T+F IEPELTLELMMAANYLHT
Sbjct: 74 GKDTEFPIEPELTLELMMAANYLHT 98
>gi|297745994|emb|CBI16050.3| unnamed protein product [Vitis vinifera]
Length = 74
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/25 (88%), Positives = 24/25 (96%)
Query: 41 GKETDFHIEPELTLELMMAANYLHT 65
GK+T+F IEPELTLELMMAANYLHT
Sbjct: 50 GKDTEFPIEPELTLELMMAANYLHT 74
>gi|388509300|gb|AFK42716.1| unknown [Medicago truncatula]
Length = 98
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/25 (84%), Positives = 23/25 (92%)
Query: 41 GKETDFHIEPELTLELMMAANYLHT 65
GK+ +F IEPELTLELMMAANYLHT
Sbjct: 74 GKDREFPIEPELTLELMMAANYLHT 98
>gi|115486829|ref|NP_001068558.1| Os11g0707700 [Oryza sativa Japonica Group]
gi|62733303|gb|AAX95420.1| conserved hypothetical protein protein [Oryza sativa Japonica
Group]
gi|77552732|gb|ABA95529.1| Skp1 family, tetramerisation domain containing protein, expressed
[Oryza sativa Japonica Group]
gi|113645780|dbj|BAF28921.1| Os11g0707700 [Oryza sativa Japonica Group]
gi|215693803|dbj|BAG89002.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222616452|gb|EEE52584.1| hypothetical protein OsJ_34887 [Oryza sativa Japonica Group]
Length = 124
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 23/26 (88%), Gaps = 1/26 (3%)
Query: 41 GKET-DFHIEPELTLELMMAANYLHT 65
GKET +F IEPE+TLELMMAANYL T
Sbjct: 99 GKETSEFQIEPEITLELMMAANYLDT 124
>gi|242092604|ref|XP_002436792.1| hypothetical protein SORBIDRAFT_10g008840 [Sorghum bicolor]
gi|241915015|gb|EER88159.1| hypothetical protein SORBIDRAFT_10g008840 [Sorghum bicolor]
Length = 115
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 23/26 (88%), Gaps = 1/26 (3%)
Query: 41 GKET-DFHIEPELTLELMMAANYLHT 65
GKET +F IEPE+TLELMMAANYL T
Sbjct: 90 GKETAEFQIEPEITLELMMAANYLDT 115
>gi|357155656|ref|XP_003577192.1| PREDICTED: transcription elongation factor B polypeptide 1-like
[Brachypodium distachyon]
Length = 115
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 23/26 (88%), Gaps = 1/26 (3%)
Query: 41 GKET-DFHIEPELTLELMMAANYLHT 65
GKET +F IEPE+TLELMMAANYL T
Sbjct: 90 GKETAEFPIEPEITLELMMAANYLDT 115
>gi|195609182|gb|ACG26421.1| elongin C [Zea mays]
Length = 114
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 23/26 (88%), Gaps = 1/26 (3%)
Query: 41 GKET-DFHIEPELTLELMMAANYLHT 65
GKET +F IEPE+TLELMMAANYL T
Sbjct: 89 GKETAEFPIEPEITLELMMAANYLDT 114
>gi|226506916|ref|NP_001150179.1| LOC100283809 [Zea mays]
gi|195637350|gb|ACG38143.1| elongin C [Zea mays]
gi|413944220|gb|AFW76869.1| elongin isoform 1 [Zea mays]
gi|413944221|gb|AFW76870.1| elongin isoform 2 [Zea mays]
Length = 114
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 23/26 (88%), Gaps = 1/26 (3%)
Query: 41 GKET-DFHIEPELTLELMMAANYLHT 65
GKET +F IEPE+TLELMMAANYL T
Sbjct: 89 GKETAEFPIEPEITLELMMAANYLDT 114
>gi|413952527|gb|AFW85176.1| elongin [Zea mays]
Length = 113
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 23/26 (88%), Gaps = 1/26 (3%)
Query: 41 GKET-DFHIEPELTLELMMAANYLHT 65
GKET +F IEPE+TLELMMAANYL T
Sbjct: 88 GKETAEFLIEPEITLELMMAANYLDT 113
>gi|195625878|gb|ACG34769.1| elongin C [Zea mays]
Length = 111
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 22/26 (84%), Gaps = 1/26 (3%)
Query: 41 GKET-DFHIEPELTLELMMAANYLHT 65
GKET +F IEPE TLELMMAANYL T
Sbjct: 86 GKETAEFLIEPETTLELMMAANYLDT 111
>gi|298707790|emb|CBJ30221.1| RNA polymerase II transcription elongation factor Elongin/SIII,
subunit elongin C [Ectocarpus siliculosus]
Length = 100
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 8/38 (21%)
Query: 26 VRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYL 63
VR+ NS + +FHIEPEL LEL+MAAN+L
Sbjct: 69 VRYTNSATRI--------PEFHIEPELALELLMAANFL 98
>gi|167523803|ref|XP_001746238.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775509|gb|EDQ89133.1| predicted protein [Monosiga brevicollis MX1]
Length = 112
Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 44 TDFHIEPELTLELMMAANYLHT 65
DFHI+P + L+L+MAAN+L T
Sbjct: 91 PDFHIDPSIVLDLLMAANFLST 112
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 915,809,858
Number of Sequences: 23463169
Number of extensions: 25894828
Number of successful extensions: 52538
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52517
Number of HSP's gapped (non-prelim): 21
length of query: 65
length of database: 8,064,228,071
effective HSP length: 37
effective length of query: 28
effective length of database: 7,196,090,818
effective search space: 201490542904
effective search space used: 201490542904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)