BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042743
(65 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VCB|B Chain B, The Vhl-Elonginc-Elonginb Structure
pdb|1VCB|E Chain E, The Vhl-Elonginc-Elonginb Structure
pdb|1VCB|H Chain H, The Vhl-Elonginc-Elonginb Structure
pdb|1VCB|K Chain K, The Vhl-Elonginc-Elonginb Structure
Length = 112
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 8/38 (21%)
Query: 26 VRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYL 63
VR+ NS + +F I PE+ LEL+MAAN+L
Sbjct: 81 VRYTNSSTEI--------PEFPIAPEIALELLMAANFL 110
>pdb|1LM8|C Chain C, Structure Of A Hif-1a-Pvhl-Elonginb-Elonginc Complex
pdb|1LQB|B Chain B, Crystal Structure Of A Hydroxylated Hif-1 Alpha Peptide
Bound To The PvhlELONGIN-CELONGIN-B Complex
pdb|2FNJ|C Chain C, Crystal Structure Of A B30.2SPRY DOMAIN-Containing
Protein Gustavus In Complex With Elongin B And Elongin
C
pdb|2JZ3|C Chain C, Socs Box Elonginbc Ternary Complex
pdb|3ZKJ|B Chain B, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With
Elonginb And Elonginc
pdb|3ZKJ|E Chain E, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With
Elonginb And Elonginc
Length = 96
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 8/38 (21%)
Query: 26 VRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYL 63
VR+ NS + +F I PE+ LEL+MAAN+L
Sbjct: 65 VRYTNSSTEI--------PEFPIAPEIALELLMAANFL 94
>pdb|2C9W|C Chain C, Crystal Structure Of Socs-2 In Complex With Elongin-B
And Elongin-C At 1.9a Resolution
pdb|2IZV|C Chain C, Crystal Structure Of Socs-4 In Complex With Elongin-B
And Elongin-C At 2.55a Resolution
pdb|3DCG|B Chain B, Crystal Structure Of The Hiv Vif Bc-Box In Complex With
Human Elonginb And Elonginc
pdb|3DCG|D Chain D, Crystal Structure Of The Hiv Vif Bc-Box In Complex With
Human Elonginb And Elonginc
pdb|3ZRC|B Chain B, Pvhl54-213-Elob-Eloc Complex
(4r)-4-Hydroxy-1-[(3-Methylisoxazol-5-
Yl)acetyl]-N-[4-(1,3-Oxazol-5-Yl)benzyl]-L-Prolinamide
Bound
pdb|3ZRC|E Chain E, Pvhl54-213-Elob-Eloc Complex
(4r)-4-Hydroxy-1-[(3-Methylisoxazol-5-
Yl)acetyl]-N-[4-(1,3-Oxazol-5-Yl)benzyl]-L-Prolinamide
Bound
pdb|3ZRC|H Chain H, Pvhl54-213-Elob-Eloc Complex
(4r)-4-Hydroxy-1-[(3-Methylisoxazol-5-
Yl)acetyl]-N-[4-(1,3-Oxazol-5-Yl)benzyl]-L-Prolinamide
Bound
pdb|3ZRC|K Chain K, Pvhl54-213-Elob-Eloc Complex
(4r)-4-Hydroxy-1-[(3-Methylisoxazol-5-
Yl)acetyl]-N-[4-(1,3-Oxazol-5-Yl)benzyl]-L-Prolinamide
Bound
pdb|3ZRF|B Chain B, Pvhl54-213-Elob-Eloc Complex_apo
pdb|3ZRF|E Chain E, Pvhl54-213-Elob-Eloc Complex_apo
pdb|3ZRF|H Chain H, Pvhl54-213-Elob-Eloc Complex_apo
pdb|3ZRF|K Chain K, Pvhl54-213-Elob-Eloc Complex_apo
pdb|3ZTC|B Chain B, Pvhl54-213-Elob-Eloc Complex _
(2s,4r)-N-((1,1'-Biphenyl)-4-
Ylmethyl)-4-Hydroxy-1-(2-(3-Methylisoxazol-5-Yl)acetyl)
Pyrrolidine-2-Carboxamide
pdb|3ZTC|E Chain E, Pvhl54-213-Elob-Eloc Complex _
(2s,4r)-N-((1,1'-Biphenyl)-4-
Ylmethyl)-4-Hydroxy-1-(2-(3-Methylisoxazol-5-Yl)acetyl)
Pyrrolidine-2-Carboxamide
pdb|3ZTC|H Chain H, Pvhl54-213-Elob-Eloc Complex _
(2s,4r)-N-((1,1'-Biphenyl)-4-
Ylmethyl)-4-Hydroxy-1-(2-(3-Methylisoxazol-5-Yl)acetyl)
Pyrrolidine-2-Carboxamide
pdb|3ZTC|K Chain K, Pvhl54-213-Elob-Eloc Complex _
(2s,4r)-N-((1,1'-Biphenyl)-4-
Ylmethyl)-4-Hydroxy-1-(2-(3-Methylisoxazol-5-Yl)acetyl)
Pyrrolidine-2-Carboxamide
pdb|3ZTD|B Chain B, Pvhl54-213-Elob-Eloc Complex _ Methyl
4-(((2s,4r)-4-Hydroxy-
1-(2-(3-Methylisoxazol-5-Yl)acetyl)pyrrolidine-2-
Carboxamido)methyl)benzoate
pdb|3ZTD|E Chain E, Pvhl54-213-Elob-Eloc Complex _ Methyl
4-(((2s,4r)-4-Hydroxy-
1-(2-(3-Methylisoxazol-5-Yl)acetyl)pyrrolidine-2-
Carboxamido)methyl)benzoate
pdb|3ZTD|H Chain H, Pvhl54-213-Elob-Eloc Complex _ Methyl
4-(((2s,4r)-4-Hydroxy-
1-(2-(3-Methylisoxazol-5-Yl)acetyl)pyrrolidine-2-
Carboxamido)methyl)benzoate
pdb|3ZTD|K Chain K, Pvhl54-213-Elob-Eloc Complex _ Methyl
4-(((2s,4r)-4-Hydroxy-
1-(2-(3-Methylisoxazol-5-Yl)acetyl)pyrrolidine-2-
Carboxamido)methyl)benzoate
pdb|3ZUN|B Chain B, Pvhl54-213-Elob-Eloc Complex_(2s,4r)-4-Hydroxy-1-(2-(3-
Methylisoxazol-5-Yl)acetyl)-N-(4-
Nitrobenzyl)pyrrolidine-2- Carboxamide Bound
pdb|3ZUN|E Chain E, Pvhl54-213-Elob-Eloc Complex_(2s,4r)-4-Hydroxy-1-(2-(3-
Methylisoxazol-5-Yl)acetyl)-N-(4-
Nitrobenzyl)pyrrolidine-2- Carboxamide Bound
pdb|3ZUN|H Chain H, Pvhl54-213-Elob-Eloc Complex_(2s,4r)-4-Hydroxy-1-(2-(3-
Methylisoxazol-5-Yl)acetyl)-N-(4-
Nitrobenzyl)pyrrolidine-2- Carboxamide Bound
pdb|3ZUN|K Chain K, Pvhl54-213-Elob-Eloc Complex_(2s,4r)-4-Hydroxy-1-(2-(3-
Methylisoxazol-5-Yl)acetyl)-N-(4-
Nitrobenzyl)pyrrolidine-2- Carboxamide Bound
pdb|4B95|B Chain B, Pvhl-Elob-Elob-Elocc
Complex_(2s,4r)-1-(2-Chlorophenyl)carbonyl-N-[
(4-Chlorophenyl)methyl]-4-Oxidanyl-Pyrrolidine-2-
Carboxamide Bound
pdb|4B95|E Chain E, Pvhl-Elob-Elob-Elocc
Complex_(2s,4r)-1-(2-Chlorophenyl)carbonyl-N-[
(4-Chlorophenyl)methyl]-4-Oxidanyl-Pyrrolidine-2-
Carboxamide Bound
pdb|4B95|H Chain H, Pvhl-Elob-Elob-Elocc
Complex_(2s,4r)-1-(2-Chlorophenyl)carbonyl-N-[
(4-Chlorophenyl)methyl]-4-Oxidanyl-Pyrrolidine-2-
Carboxamide Bound
pdb|4B95|K Chain K, Pvhl-Elob-Elob-Elocc
Complex_(2s,4r)-1-(2-Chlorophenyl)carbonyl-N-[
(4-Chlorophenyl)methyl]-4-Oxidanyl-Pyrrolidine-2-
Carboxamide Bound
pdb|4B9K|B Chain B, Pvhl-Elob-Eloc
Complex_(2s,4r)-1-(3-Amino-2-Methylbenzoyl)-4-
Hydroxy-N-(4-(4-Methylthiazol-5-Yl)benzyl)
Pyrrolidine-2-Carboxamide Bound
pdb|4B9K|H Chain H, Pvhl-Elob-Eloc
Complex_(2s,4r)-1-(3-Amino-2-Methylbenzoyl)-4-
Hydroxy-N-(4-(4-Methylthiazol-5-Yl)benzyl)
Pyrrolidine-2-Carboxamide Bound
pdb|4B9K|K Chain K, Pvhl-Elob-Eloc
Complex_(2s,4r)-1-(3-Amino-2-Methylbenzoyl)-4-
Hydroxy-N-(4-(4-Methylthiazol-5-Yl)benzyl)
Pyrrolidine-2-Carboxamide Bound
pdb|4AJY|C Chain C, Von Hippel-Lindau Protein-Elonginb-Elonginc Complex,
Bound To Hif1- Alpha Peptide
pdb|4AWJ|B Chain B, Pvhl:elob:eloc Complex, In Complex With Capped
Hydroxyproline
pdb|4AWJ|E Chain E, Pvhl:elob:eloc Complex, In Complex With Capped
Hydroxyproline
pdb|4AWJ|H Chain H, Pvhl:elob:eloc Complex, In Complex With Capped
Hydroxyproline
pdb|4AWJ|K Chain K, Pvhl:elob:eloc Complex, In Complex With Capped
Hydroxyproline
Length = 97
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 8/38 (21%)
Query: 26 VRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYL 63
VR+ NS + +F I PE+ LEL+MAAN+L
Sbjct: 66 VRYTNSSTEI--------PEFPIAPEIALELLMAANFL 95
>pdb|4B9K|E Chain E, Pvhl-Elob-Eloc
Complex_(2s,4r)-1-(3-Amino-2-Methylbenzoyl)-4-
Hydroxy-N-(4-(4-Methylthiazol-5-Yl)benzyl)
Pyrrolidine-2-Carboxamide Bound
Length = 97
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 8/38 (21%)
Query: 26 VRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYL 63
VR+ NS + +F I PE+ LEL+MAAN+L
Sbjct: 66 VRYTNSSTEI--------PEFPIAPEIALELLMAANFL 95
>pdb|1HV2|A Chain A, Solution Structure Of Yeast Elongin C In Complex With A
Von Hippel-Lindau Peptide
Length = 99
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 45 DFHIEPELTLELMMAANYL 63
+F I E++LEL++AA+YL
Sbjct: 79 EFEIPTEMSLELLLAADYL 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,751,102
Number of Sequences: 62578
Number of extensions: 50430
Number of successful extensions: 102
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 5
length of query: 65
length of database: 14,973,337
effective HSP length: 36
effective length of query: 29
effective length of database: 12,720,529
effective search space: 368895341
effective search space used: 368895341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)