BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042743
         (65 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P83941|ELOC_RAT Transcription elongation factor B polypeptide 1 OS=Rattus
           norvegicus GN=Tceb1 PE=1 SV=1
          Length = 112

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 8/38 (21%)

Query: 26  VRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYL 63
           VR+ NS   +         +F I PE+ LEL+MAAN+L
Sbjct: 81  VRYTNSSTEI--------PEFPIAPEIALELLMAANFL 110


>sp|P83940|ELOC_MOUSE Transcription elongation factor B polypeptide 1 OS=Mus musculus
           GN=Tceb1 PE=1 SV=1
          Length = 112

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 8/38 (21%)

Query: 26  VRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYL 63
           VR+ NS   +         +F I PE+ LEL+MAAN+L
Sbjct: 81  VRYTNSSTEI--------PEFPIAPEIALELLMAANFL 110


>sp|Q15369|ELOC_HUMAN Transcription elongation factor B polypeptide 1 OS=Homo sapiens
           GN=TCEB1 PE=1 SV=1
          Length = 112

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 8/38 (21%)

Query: 26  VRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYL 63
           VR+ NS   +         +F I PE+ LEL+MAAN+L
Sbjct: 81  VRYTNSSTEI--------PEFPIAPEIALELLMAANFL 110


>sp|Q2KII4|ELOC_BOVIN Transcription elongation factor B polypeptide 1 OS=Bos taurus
           GN=TCEB1 PE=3 SV=1
          Length = 112

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 8/38 (21%)

Query: 26  VRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYL 63
           VR+ NS   +         +F I PE+ LEL+MAAN+L
Sbjct: 81  VRYTNSSTEI--------PEFPIAPEIALELLMAANFL 110


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.134    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,890,743
Number of Sequences: 539616
Number of extensions: 620036
Number of successful extensions: 1439
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1435
Number of HSP's gapped (non-prelim): 4
length of query: 65
length of database: 191,569,459
effective HSP length: 37
effective length of query: 28
effective length of database: 171,603,667
effective search space: 4804902676
effective search space used: 4804902676
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)