Query 042743
Match_columns 65
No_of_seqs 102 out of 115
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 15:42:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ajy_C Transcription elongatio 99.6 5.2E-16 1.8E-20 95.0 4.3 47 11-65 50-97 (97)
2 2fnj_C Transcription elongatio 99.5 2.6E-15 8.7E-20 92.8 3.7 47 11-65 49-96 (96)
3 1vcb_B Protein (elongin C); tu 99.5 4.8E-15 1.6E-19 94.7 4.6 47 11-65 65-112 (112)
4 1hv2_A Elongin C, ELC1; protei 99.5 3.3E-14 1.1E-18 88.4 3.6 50 11-65 49-99 (99)
5 3v7d_A Suppressor of kinetocho 99.0 1.9E-10 6.5E-15 77.0 4.0 55 11-65 57-118 (169)
6 1fs1_B SKP1, cyclin A/CDK2-ass 99.0 3.7E-10 1.3E-14 73.1 3.3 55 11-65 44-106 (141)
7 2p1m_A SKP1-like protein 1A; F 98.9 2.4E-10 8.2E-15 75.3 0.8 55 11-65 47-110 (160)
8 2ast_A S-phase kinase-associat 98.8 3E-09 1E-13 69.4 3.8 55 11-65 49-111 (159)
9 2vpk_A Myoneurin; transcriptio 93.9 0.062 2.1E-06 31.7 3.4 19 47-65 85-103 (116)
10 2yy9_A Zinc finger and BTB dom 93.8 0.058 2E-06 33.1 3.2 36 12-65 69-104 (135)
11 3fkc_A Transcriptional regulat 93.7 0.085 2.9E-06 31.6 3.9 19 47-65 92-110 (116)
12 1buo_A POZ domain, protein (pr 93.6 0.08 2.7E-06 31.6 3.6 36 12-65 71-106 (121)
13 2if5_A Zinc finger and BTB dom 93.5 0.08 2.7E-06 31.2 3.5 19 47-65 90-108 (120)
14 3b84_A Zinc finger and BTB dom 93.4 0.08 2.7E-06 31.6 3.3 35 13-65 69-103 (119)
15 2vkp_A BTB/POZ domain-containi 93.2 0.089 3.1E-06 30.3 3.3 19 47-65 76-94 (109)
16 2q81_A MIZ-1 protein; BTB/POZ 92.9 0.11 3.7E-06 31.0 3.4 19 47-65 87-105 (119)
17 1r29_A B-cell lymphoma 6 prote 92.4 0.12 4.2E-06 30.8 3.2 19 47-65 94-112 (127)
18 3htm_A Speckle-type POZ protei 92.3 0.25 8.6E-06 30.3 4.6 19 47-65 99-117 (172)
19 2ppi_A Gigaxonin; BTB domain, 92.2 0.13 4.6E-06 31.9 3.3 19 47-65 114-132 (144)
20 4eoz_A Speckle-type POZ protei 92.2 0.15 5E-06 30.5 3.3 36 12-65 73-108 (145)
21 2z8h_A Transcription regulator 90.7 0.22 7.6E-06 30.3 3.1 19 47-65 100-118 (138)
22 3m5b_A Zinc finger and BTB dom 90.0 0.19 6.4E-06 30.6 2.3 36 12-65 69-104 (119)
23 3ohu_A Transcription regulator 89.5 0.15 5.1E-06 30.3 1.6 19 47-65 96-114 (125)
24 3ga1_A Nucleus accumbens-assoc 88.4 0.23 7.9E-06 29.8 1.9 36 12-65 78-113 (129)
25 2ihc_A Transcription regulator 87.2 0.23 7.8E-06 29.8 1.3 18 48-65 94-111 (124)
26 3hve_A Gigaxonin; ubiquitin, c 84.4 0.73 2.5E-05 30.4 2.8 19 47-65 98-116 (256)
27 3i3n_A Kelch-like protein 11; 79.8 1.1 3.9E-05 29.9 2.4 18 48-65 107-124 (279)
28 3hqi_A Speckle-type POZ protei 77.2 1.5 5E-05 29.6 2.4 18 48-65 240-257 (312)
29 1pd7_B MAD1; PAH2, SIN3, eukar 62.3 2 6.7E-05 22.0 0.3 11 54-64 6-16 (26)
30 1qkr_A Vinculin, tail domain; 61.4 4.1 0.00014 28.3 2.0 27 38-64 2-28 (188)
31 1pxq_A Subtilisin A; thioether 51.5 6.5 0.00022 21.1 1.3 11 40-50 16-26 (35)
32 3thg_A Ribulose bisphosphate c 45.1 7.2 0.00025 25.3 1.0 20 41-61 76-95 (107)
33 1r5l_A Alpha-TTP, protein (alp 41.3 8 0.00028 25.1 0.8 22 2-23 200-221 (262)
34 1aua_A Phosphatidylinositol tr 27.5 10 0.00035 25.5 -0.5 22 2-23 231-252 (296)
35 3bww_A Protein of unknown func 26.9 56 0.0019 24.0 3.3 51 10-63 242-293 (307)
36 2gdt_A Leader protein; P65 hom 26.4 38 0.0013 22.3 2.1 18 41-58 15-32 (116)
37 2hc5_A ORF 99, hypothetical pr 25.6 24 0.00081 22.4 1.0 13 47-59 84-96 (117)
38 3ukn_A Novel protein similar t 21.9 96 0.0033 18.9 3.3 40 12-58 31-71 (212)
39 3q8g_A CRAL-TRIO domain-contai 21.6 31 0.001 24.1 1.0 22 2-23 246-267 (320)
No 1
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.60 E-value=5.2e-16 Score=95.02 Aligned_cols=47 Identities=40% Similarity=0.602 Sum_probs=43.1
Q ss_pred eccchHHHHHHHh-hhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743 11 HASNDIDVGSEYF-EAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT 65 (65)
Q Consensus 11 ~~S~vLekV~eYl-Yk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~ 65 (65)
++|.+|+||+||+ |+.+|.++. +++|+|+|+++.++|||+|||||+|
T Consensus 50 V~~~iL~kViey~~~h~~~~~~~--------~~i~~~~i~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 50 IPSHVLSKVCMYFTYKVRYTNSS--------TEIPEFPIAPEIALELLMAANFLDC 97 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCC--------SCCCCCCCCGGGHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcccCCCc--------CCCCcCcCCHHHHHHHHHHHhhhCC
Confidence 6799999999999 888887654 6899999999999999999999998
No 2
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=99.55 E-value=2.6e-15 Score=92.85 Aligned_cols=47 Identities=40% Similarity=0.602 Sum_probs=42.9
Q ss_pred eccchHHHHHHHh-hhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743 11 HASNDIDVGSEYF-EAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT 65 (65)
Q Consensus 11 ~~S~vLekV~eYl-Yk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~ 65 (65)
++|.+|+|||||+ |+.+|.++. .++|+|+|++++.+||++||||||+
T Consensus 49 V~~~iL~kVieyc~~h~~~~~~~--------~~i~~w~vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 49 IPSHVLSKVCMYFTYKVRYTNSS--------TEIPEFPIAPEIALELLMAANFLDC 96 (96)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCC--------SCCCCCCCCTTTHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHccccCCCc--------ccCCCcccCHHHHHHHHHHHHHhCc
Confidence 5899999999999 888887654 6899999999999999999999996
No 3
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=99.54 E-value=4.8e-15 Score=94.67 Aligned_cols=47 Identities=40% Similarity=0.602 Sum_probs=43.1
Q ss_pred eccchHHHHHHHh-hhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743 11 HASNDIDVGSEYF-EAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT 65 (65)
Q Consensus 11 ~~S~vLekV~eYl-Yk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~ 65 (65)
++|.+|+|||||+ |+.+|.++. .++|+|+|++++.+|||+||||||+
T Consensus 65 V~s~iL~kVieyc~~h~~~~~~~--------~~i~~w~vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 65 IPSHVLSKVCMYFTYKVRYTNSS--------TEIPEFPIAPEIALELLMAANFLDC 112 (112)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCS--------SCCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhhhccCCc--------CCCCCcccCHHHHHHHHHHHHHhCc
Confidence 6899999999999 888887664 6899999999999999999999996
No 4
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=99.46 E-value=3.3e-14 Score=88.42 Aligned_cols=50 Identities=26% Similarity=0.431 Sum_probs=42.3
Q ss_pred eccchHHHHHHHh-hhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743 11 HASNDIDVGSEYF-EAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT 65 (65)
Q Consensus 11 ~~S~vLekV~eYl-Yk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~ 65 (65)
++|.+|+|||||+ |+..|..+.. ...++|+|+|+++..+||++||||||+
T Consensus 49 V~~~iL~kVieyc~~h~~~~~~~~-----~~~~i~~w~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 49 FDSHILEKAVEYLNYNLKYSGVSE-----DDDEIPEFEIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCS-----SCSSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHHHHhcccCCCcc-----ccccCCCccCCHHHHHHHHHHHHHhCc
Confidence 6899999999999 7777765421 236899999999999999999999996
No 5
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=99.02 E-value=1.9e-10 Score=76.97 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=39.5
Q ss_pred eccchHHHHHHHh-hhhhcccCcc-cccccccCCCCC-----CCCChHHHHHHHHhhhhcCC
Q 042743 11 HASNDIDVGSEYF-EAVRFVNSLG-SVMLSIWGKETD-----FHIEPELTLELMMAANYLHT 65 (65)
Q Consensus 11 ~~S~vLekV~eYl-Yk~rY~~s~~-~~~~~~~~~iPe-----F~IppEiaLELLmAAdyLd~ 65 (65)
++|.+|+|||+|+ |+..+..... ........++|+ |+|+++..+||++|||||++
T Consensus 57 V~s~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdI 118 (169)
T 3v7d_A 57 VRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNI 118 (169)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCC--------CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHcccCCCcccccccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 6899999999999 7666632110 000012257888 58999999999999999985
No 6
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=98.95 E-value=3.7e-10 Score=73.07 Aligned_cols=55 Identities=13% Similarity=0.042 Sum_probs=35.0
Q ss_pred eccchHHHHHHHh-hhhhcccCcccc--cccccCCCCC-----CCCChHHHHHHHHhhhhcCC
Q 042743 11 HASNDIDVGSEYF-EAVRFVNSLGSV--MLSIWGKETD-----FHIEPELTLELMMAANYLHT 65 (65)
Q Consensus 11 ~~S~vLekV~eYl-Yk~rY~~s~~~~--~~~~~~~iPe-----F~IppEiaLELLmAAdyLd~ 65 (65)
++|.+|+||++|+ |+..+......- ......++|+ |+|+++..+||++|||||++
T Consensus 44 V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I 106 (141)
T 1fs1_B 44 VNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDI 106 (141)
T ss_dssp CCHHHHHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 5799999999999 555553221000 0001246777 79999999999999999985
No 7
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.89 E-value=2.4e-10 Score=75.26 Aligned_cols=55 Identities=24% Similarity=0.216 Sum_probs=20.7
Q ss_pred eccchHHHHHHHh-hhhhcccCccc--cc-ccccCCCCCC-----CCChHHHHHHHHhhhhcCC
Q 042743 11 HASNDIDVGSEYF-EAVRFVNSLGS--VM-LSIWGKETDF-----HIEPELTLELMMAANYLHT 65 (65)
Q Consensus 11 ~~S~vLekV~eYl-Yk~rY~~s~~~--~~-~~~~~~iPeF-----~IppEiaLELLmAAdyLd~ 65 (65)
++|.+|+||++|+ |+..+...... .. .....++|+| +|+++..+|||+|||||++
T Consensus 47 V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I 110 (160)
T 2p1m_A 47 VTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNI 110 (160)
T ss_dssp SCHHHHHHHHHC------------------------------------------CHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHcCCHHHHHHHHHHHHHHhH
Confidence 6799999999999 55544211000 00 0112567876 8999999999999999985
No 8
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=98.81 E-value=3e-09 Score=69.45 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=37.9
Q ss_pred eccchHHHHHHHhhhhh-cccCccc--ccccccCCCCC-----CCCChHHHHHHHHhhhhcCC
Q 042743 11 HASNDIDVGSEYFEAVR-FVNSLGS--VMLSIWGKETD-----FHIEPELTLELMMAANYLHT 65 (65)
Q Consensus 11 ~~S~vLekV~eYlYk~r-Y~~s~~~--~~~~~~~~iPe-----F~IppEiaLELLmAAdyLd~ 65 (65)
+.|.+|+||++|+|+++ +...... .......++|+ ++|+++..+|||+|||||++
T Consensus 49 V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I 111 (159)
T 2ast_A 49 VNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDI 111 (159)
T ss_dssp SCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHHcCCHHHHHHHHHHHHHHhH
Confidence 68999999999994444 4322100 00011256777 79999999999999999985
No 9
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=93.85 E-value=0.062 Score=31.67 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=16.3
Q ss_pred CCChHHHHHHHHhhhhcCC
Q 042743 47 HIEPELTLELMMAANYLHT 65 (65)
Q Consensus 47 ~IppEiaLELLmAAdyLd~ 65 (65)
+|+++.+.+||.||+++++
T Consensus 85 ~~~~~~v~~ll~~A~~~~i 103 (116)
T 2vpk_A 85 NLDSWNVKEIHQAADYLKV 103 (116)
T ss_dssp CCCTTTHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHhCC
Confidence 3677899999999999974
No 10
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=93.76 E-value=0.058 Score=33.11 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=26.3
Q ss_pred ccchHHHHHHHhhhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743 12 ASNDIDVGSEYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT 65 (65)
Q Consensus 12 ~S~vLekV~eYlYk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~ 65 (65)
...+++.+++|+|.- . .+|+++.+.+||.||++|++
T Consensus 69 ~~~~f~~lL~fiYtg----~--------------~~i~~~~v~~ll~~A~~l~i 104 (135)
T 2yy9_A 69 FAEIFGLLLDFFYTG----H--------------LALTSGNRDQVLLAAKELRV 104 (135)
T ss_dssp GHHHHHHHHHHHHHS----C--------------CCCCTTTHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhCC----C--------------CCCCHHHHHHHHHHHHHhCc
Confidence 345777788887741 1 24567889999999999974
No 11
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=93.70 E-value=0.085 Score=31.64 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=16.7
Q ss_pred CCChHHHHHHHHhhhhcCC
Q 042743 47 HIEPELTLELMMAANYLHT 65 (65)
Q Consensus 47 ~IppEiaLELLmAAdyLd~ 65 (65)
.|+++.+.+||.||++|++
T Consensus 92 ~~~~~~~~~ll~~A~~l~i 110 (116)
T 3fkc_A 92 RVRSDLLDELIKSGQLLGV 110 (116)
T ss_dssp SCCHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhCc
Confidence 3788999999999999874
No 12
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=93.62 E-value=0.08 Score=31.60 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=25.5
Q ss_pred ccchHHHHHHHhhhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743 12 ASNDIDVGSEYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT 65 (65)
Q Consensus 12 ~S~vLekV~eYlYk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~ 65 (65)
.+..++.+++|+|. + . .+++++.+.+||.||+++++
T Consensus 71 ~~~~f~~ll~~~Yt----g-----------~---~~~~~~~~~~ll~~A~~~~i 106 (121)
T 1buo_A 71 SPKTFQQILEYAYT----A-----------T---LQAKAEDLDDLLYAAEILEI 106 (121)
T ss_dssp CHHHHHHHHHHHHH----S-----------C---CCCCGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHhhcC----C-----------C---cCCCHHHHHHHHHHHHHHCC
Confidence 34566777777763 1 1 23677899999999999874
No 13
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=93.53 E-value=0.08 Score=31.25 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=16.3
Q ss_pred CCChHHHHHHHHhhhhcCC
Q 042743 47 HIEPELTLELMMAANYLHT 65 (65)
Q Consensus 47 ~IppEiaLELLmAAdyLd~ 65 (65)
+++++.+.+||.+|+++++
T Consensus 90 ~~~~~~~~~ll~~A~~~~i 108 (120)
T 2if5_A 90 TVSTANVGDILSAARLLEI 108 (120)
T ss_dssp CCCGGGHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHhCC
Confidence 3678899999999999874
No 14
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=93.38 E-value=0.08 Score=31.62 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=24.6
Q ss_pred cchHHHHHHHhhhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743 13 SNDIDVGSEYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT 65 (65)
Q Consensus 13 S~vLekV~eYlYk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~ 65 (65)
+.+++.+++|+|. +. .+|+++.+.+||.||+++++
T Consensus 69 ~~~f~~ll~~iYt----g~--------------~~~~~~~v~~ll~~A~~~~i 103 (119)
T 3b84_A 69 AEIFGLLLDFFYT----GH--------------LALTSGNRDQVLLAARELRV 103 (119)
T ss_dssp HHHHHHHHHHHHH----SC--------------CCCCTTTHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcC----CC--------------CccCHHHHHHHHHHHHHhCc
Confidence 4566777777763 11 13567789999999999974
No 15
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=93.20 E-value=0.089 Score=30.35 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=16.3
Q ss_pred CCChHHHHHHHHhhhhcCC
Q 042743 47 HIEPELTLELMMAANYLHT 65 (65)
Q Consensus 47 ~IppEiaLELLmAAdyLd~ 65 (65)
+++++.+.+||.+|+++++
T Consensus 76 ~~~~~~~~~ll~~A~~~~~ 94 (109)
T 2vkp_A 76 DLEADTVLATLYAAKKYIV 94 (109)
T ss_dssp CCCTTTHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 4677899999999999875
No 16
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=92.86 E-value=0.11 Score=31.00 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=16.2
Q ss_pred CCChHHHHHHHHhhhhcCC
Q 042743 47 HIEPELTLELMMAANYLHT 65 (65)
Q Consensus 47 ~IppEiaLELLmAAdyLd~ 65 (65)
+|+++.+.+||.+|++|++
T Consensus 87 ~i~~~~~~~ll~~A~~l~i 105 (119)
T 2q81_A 87 SLSPENVDDVLAVATFLQM 105 (119)
T ss_dssp CCCTTTHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHhCC
Confidence 4677889999999999974
No 17
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=92.43 E-value=0.12 Score=30.82 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=16.1
Q ss_pred CCChHHHHHHHHhhhhcCC
Q 042743 47 HIEPELTLELMMAANYLHT 65 (65)
Q Consensus 47 ~IppEiaLELLmAAdyLd~ 65 (65)
+|+++.+.+||.+|+++++
T Consensus 94 ~~~~~~~~~ll~~A~~~~i 112 (127)
T 1r29_A 94 NLREGNIMAVMATAMYLQM 112 (127)
T ss_dssp CCCTTTHHHHHHHHHHTTC
T ss_pred CcCHHHHHHHHHHHHHhCC
Confidence 3577889999999999874
No 18
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=92.29 E-value=0.25 Score=30.27 Aligned_cols=19 Identities=16% Similarity=0.086 Sum_probs=15.9
Q ss_pred CCChHHHHHHHHhhhhcCC
Q 042743 47 HIEPELTLELMMAANYLHT 65 (65)
Q Consensus 47 ~IppEiaLELLmAAdyLd~ 65 (65)
+++++.+.+||.+|+++++
T Consensus 99 ~~~~~~~~~ll~~A~~~~~ 117 (172)
T 3htm_A 99 PNLDKMADDLLAAADKYAL 117 (172)
T ss_dssp TTGGGTHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHHHhCc
Confidence 3677889999999999874
No 19
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=92.20 E-value=0.13 Score=31.93 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=16.3
Q ss_pred CCChHHHHHHHHhhhhcCC
Q 042743 47 HIEPELTLELMMAANYLHT 65 (65)
Q Consensus 47 ~IppEiaLELLmAAdyLd~ 65 (65)
+|+++.+.+||.||++|++
T Consensus 114 ~i~~~~v~~ll~~A~~l~i 132 (144)
T 2ppi_A 114 RLNEDTIQDVVQAADLLLL 132 (144)
T ss_dssp CCCTTTHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCc
Confidence 4677899999999999974
No 20
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=92.18 E-value=0.15 Score=30.52 Aligned_cols=36 Identities=8% Similarity=-0.013 Sum_probs=25.2
Q ss_pred ccchHHHHHHHhhhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743 12 ASNDIDVGSEYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT 65 (65)
Q Consensus 12 ~S~vLekV~eYlYk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~ 65 (65)
.+..++.+++|+|.-+ + +++++.+.+||.+|+++++
T Consensus 73 ~~~~~~~~l~~~Y~~~---------------~---~~~~~~~~~ll~~A~~~~~ 108 (145)
T 4eoz_A 73 EPEVFKEMMCFIYTGK---------------A---PNLDKMADDLLAAADKYAL 108 (145)
T ss_dssp CHHHHHHHHHHHHHSC---------------C---TTGGGTHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHhhccCc---------------c---CCcHHHHHHHHHHHHHhCH
Confidence 4566677777776321 1 2567889999999999874
No 21
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=90.70 E-value=0.22 Score=30.35 Aligned_cols=19 Identities=11% Similarity=0.162 Sum_probs=16.3
Q ss_pred CCChHHHHHHHHhhhhcCC
Q 042743 47 HIEPELTLELMMAANYLHT 65 (65)
Q Consensus 47 ~IppEiaLELLmAAdyLd~ 65 (65)
+|+++.+.+||.||++|++
T Consensus 100 ~i~~~~v~~ll~~A~~~~i 118 (138)
T 2z8h_A 100 ILSKDNVDEVCRCVEFLSV 118 (138)
T ss_dssp CCCTTTHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHHhCC
Confidence 4677889999999999975
No 22
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=90.00 E-value=0.19 Score=30.59 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=26.4
Q ss_pred ccchHHHHHHHhhhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743 12 ASNDIDVGSEYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT 65 (65)
Q Consensus 12 ~S~vLekV~eYlYk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~ 65 (65)
.+.+++.+++|+|. +. ..|+.+.+.+||.||++|++
T Consensus 69 ~~~~f~~ll~fiYt----g~--------------~~i~~~~v~~ll~aA~~l~i 104 (119)
T 3m5b_A 69 SPSTFAQLLNFVYG----ES--------------VELQPGELRPLQEAARALGV 104 (119)
T ss_dssp CHHHHHHHHHHHTT----CC--------------EEECGGGHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHcC----CC--------------cCcCHHHHHHHHHHHHHhCC
Confidence 45677778888763 22 14567889999999999974
No 23
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=89.52 E-value=0.15 Score=30.35 Aligned_cols=19 Identities=21% Similarity=0.301 Sum_probs=15.7
Q ss_pred CCChHHHHHHHHhhhhcCC
Q 042743 47 HIEPELTLELMMAANYLHT 65 (65)
Q Consensus 47 ~IppEiaLELLmAAdyLd~ 65 (65)
+|+++.+.+||.||++|++
T Consensus 96 ~~~~~~v~~ll~~A~~l~i 114 (125)
T 3ohu_A 96 LLSRENIREVIRCAEFLRM 114 (125)
T ss_dssp EECTTTHHHHHHHHHHHTB
T ss_pred EECHHHHHHHHHHHHHhCC
Confidence 3567788999999999874
No 24
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=88.44 E-value=0.23 Score=29.83 Aligned_cols=36 Identities=14% Similarity=0.113 Sum_probs=24.7
Q ss_pred ccchHHHHHHHhhhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhcCC
Q 042743 12 ASNDIDVGSEYFEAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYLHT 65 (65)
Q Consensus 12 ~S~vLekV~eYlYk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyLd~ 65 (65)
.+.+++.+++|+|.-+ .+|+++.+.+||.||++|++
T Consensus 78 ~~~~f~~ll~~iYtg~------------------~~i~~~~~~~ll~~A~~~~i 113 (129)
T 3ga1_A 78 QPQSFQQILSFCYTGR------------------LSMNVGDQDLLMYTAGFLQI 113 (129)
T ss_dssp CHHHHHHHHHHHHHSE------------------EECCTTTHHHHHHHHHHTTB
T ss_pred CHHHHHHHHHHHhCCc------------------cccCHHHHHHHHHHHHHhCC
Confidence 3456667777766321 13566778999999999874
No 25
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=87.21 E-value=0.23 Score=29.76 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=15.2
Q ss_pred CChHHHHHHHHhhhhcCC
Q 042743 48 IEPELTLELMMAANYLHT 65 (65)
Q Consensus 48 IppEiaLELLmAAdyLd~ 65 (65)
|+++.+.+||.||+++++
T Consensus 94 i~~~~v~~ll~~A~~~~~ 111 (124)
T 2ihc_A 94 LSKENVDEVCKCVEFLSV 111 (124)
T ss_dssp EETTTHHHHHHHHHHHTB
T ss_pred cCHHHHHHHHHHHHHHCC
Confidence 566789999999999874
No 26
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=84.40 E-value=0.73 Score=30.37 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=15.1
Q ss_pred CCChHHHHHHHHhhhhcCC
Q 042743 47 HIEPELTLELMMAANYLHT 65 (65)
Q Consensus 47 ~IppEiaLELLmAAdyLd~ 65 (65)
+|+++.+.+||.||++|++
T Consensus 98 ~i~~~~v~~ll~~A~~l~i 116 (256)
T 3hve_A 98 RLNEDTIQDVVQAADLLLL 116 (256)
T ss_dssp CCC-CCHHHHHHHHHHHTC
T ss_pred cccHhHHHHHHHHHHHHCh
Confidence 3667889999999999874
No 27
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=79.76 E-value=1.1 Score=29.91 Aligned_cols=18 Identities=11% Similarity=0.099 Sum_probs=14.7
Q ss_pred CChHHHHHHHHhhhhcCC
Q 042743 48 IEPELTLELMMAANYLHT 65 (65)
Q Consensus 48 IppEiaLELLmAAdyLd~ 65 (65)
|+++.+.+||.||++|++
T Consensus 107 i~~~~v~~ll~~A~~l~i 124 (279)
T 3i3n_A 107 VSTGSVHEVLELADRFLL 124 (279)
T ss_dssp EETTTHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHCc
Confidence 456778999999999874
No 28
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=77.24 E-value=1.5 Score=29.63 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=15.2
Q ss_pred CChHHHHHHHHhhhhcCC
Q 042743 48 IEPELTLELMMAANYLHT 65 (65)
Q Consensus 48 IppEiaLELLmAAdyLd~ 65 (65)
++.+.+.+||.|||++++
T Consensus 240 ~~~~~~~~ll~~A~~~~~ 257 (312)
T 3hqi_A 240 NLDKMADDLLAAADKYAL 257 (312)
T ss_dssp THHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHhCH
Confidence 456899999999999874
No 29
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=62.30 E-value=2 Score=22.02 Aligned_cols=11 Identities=45% Similarity=0.619 Sum_probs=8.7
Q ss_pred HHHHHhhhhcC
Q 042743 54 LELMMAANYLH 64 (65)
Q Consensus 54 LELLmAAdyLd 64 (65)
.-||.||+||+
T Consensus 6 q~LLeAAeyLE 16 (26)
T 1pd7_B 6 QMLLEAADYLE 16 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34889999985
No 30
>1qkr_A Vinculin, tail domain; actin cytoskeleton, cell adhesion, helical bundle, lipid binding; 1.8A {Gallus gallus} SCOP: a.24.9.1 PDB: 3h2u_A 3h2v_A 1rke_B 3myi_A
Probab=61.44 E-value=4.1 Score=28.26 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=23.2
Q ss_pred cccCCCCCCCCChHHHHHHHHhhhhcC
Q 042743 38 SIWGKETDFHIEPELTLELMMAANYLH 64 (65)
Q Consensus 38 ~~~~~iPeF~IppEiaLELLmAAdyLd 64 (65)
+.++++|+|+.++.+--+.++||.-|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~i~~aa~~l~ 28 (188)
T 1qkr_A 2 EKDEEFPEQKAGEAINQPMMMAARQLH 28 (188)
T ss_dssp -CCCCCCCCCTTHHHHCHHHHHHHHHH
T ss_pred CcccccCCCCCCCCCCchHHHHHHHHH
Confidence 356899999999999999999998775
No 31
>1pxq_A Subtilisin A; thioether bridge, cyclic peptide, bacteriocin, antimicrobial; HET: 2TL DPN; NMR {Bacillus subtilis} SCOP: j.5.1.2
Probab=51.45 E-value=6.5 Score=21.12 Aligned_cols=11 Identities=36% Similarity=0.386 Sum_probs=9.0
Q ss_pred cCCCCCCCCCh
Q 042743 40 WGKETDFHIEP 50 (65)
Q Consensus 40 ~~~iPeF~Ipp 50 (65)
++.+|||+|..
T Consensus 16 dgpipdfeva~ 26 (35)
T 1pxq_A 16 DGPIPDFEIAG 26 (35)
T ss_dssp TTTCCCSCCSC
T ss_pred cCCCCCchhhh
Confidence 47999999864
No 32
>3thg_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; four-helix bundle, rubisco reactivation, chloroplast stroma, ATPase; 1.88A {Larrea tridentata}
Probab=45.11 E-value=7.2 Score=25.27 Aligned_cols=20 Identities=15% Similarity=0.486 Sum_probs=16.5
Q ss_pred CCCCCCCCChHHHHHHHHhhh
Q 042743 41 GKETDFHIEPELTLELMMAAN 61 (65)
Q Consensus 41 ~~iPeF~IppEiaLELLmAAd 61 (65)
+..|.|. ||+++||-|+++-
T Consensus 76 e~~P~F~-~P~~tl~~Lle~G 95 (107)
T 3thg_A 76 EGPPSFE-QPKMTIDKLLGYG 95 (107)
T ss_dssp CCCCCCC-CCCCCHHHHHHHH
T ss_pred CCCCCCC-CCcCCHHHHHHHH
Confidence 4579998 9999999998764
No 33
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=41.34 E-value=8 Score=25.13 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=16.7
Q ss_pred ccccceEEeeccchHHHHHHHh
Q 042743 2 KKTRKKVIFHASNDIDVGSEYF 23 (65)
Q Consensus 2 ~~~~~~~~~~~S~vLekV~eYl 23 (65)
.+||+||.|+.++..+...+|+
T Consensus 200 ~~t~~Ki~~~~~~~~~~L~~~i 221 (262)
T 1r5l_A 200 EKIKERIHMHGNNYKQSLLQHF 221 (262)
T ss_dssp HHHHTTEEECCSSCHHHHHHHS
T ss_pred HHHHhheEEeCCCcHHHHHHHh
Confidence 4789999999876666666665
No 34
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=27.54 E-value=10 Score=25.46 Aligned_cols=22 Identities=14% Similarity=-0.055 Sum_probs=17.0
Q ss_pred ccccceEEeeccchHHHHHHHh
Q 042743 2 KKTRKKVIFHASNDIDVGSEYF 23 (65)
Q Consensus 2 ~~~~~~~~~~~S~vLekV~eYl 23 (65)
.+||+||.|+.++..+...+|+
T Consensus 231 ~~t~~KI~~~~~~~~~~L~~~i 252 (296)
T 1aua_A 231 PVTVSKIFILGSSYQKELLKQI 252 (296)
T ss_dssp HHHHTTEEECCSCCHHHHTTTS
T ss_pred HhhcceEEEeCcccHHHHHhhC
Confidence 4789999999887666666665
No 35
>3bww_A Protein of unknown function DUF692/COG3220; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.20A {Haemophilus somnus}
Probab=26.89 E-value=56 Score=24.04 Aligned_cols=51 Identities=10% Similarity=-0.065 Sum_probs=27.2
Q ss_pred eeccchHHHHHHHh-hhhhcccCcccccccccCCCCCCCCChHHHHHHHHhhhhc
Q 042743 10 FHASNDIDVGSEYF-EAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMMAANYL 63 (65)
Q Consensus 10 ~~~S~vLekV~eYl-Yk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLmAAdyL 63 (65)
-|..+|-+-|-+-+ +-.+-.+....+++|-+.++|+ .+++.-|+-.|.+.+
T Consensus 242 TH~~~V~~~VW~Ll~~~~~r~g~~~ptllErD~niP~---~~~L~~E~~~a~~~~ 293 (307)
T 3bww_A 242 THGENVKGTVWDLLEYTYARLSHMPPTLLERDFNFPP---FEKLCKEVDIIHQLQ 293 (307)
T ss_dssp --------HHHHHHHHHHTTCSSBCCEEECC---CCC---HHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHhcCCCCceEEEecCCCCC---HHHHHHHHHHHHHHH
Confidence 37788889898888 6666555432467777777777 466777877776654
No 36
>2gdt_A Leader protein; P65 homolog; NSP1 (EC 3.4.22.-); beta-barrel, alpha-beta, replicase, structural genomics, PSI-2, protein structure initiative; NMR {Sars coronavirus} SCOP: d.346.1.1 PDB: 2hsx_A
Probab=26.37 E-value=38 Score=22.27 Aligned_cols=18 Identities=17% Similarity=-0.123 Sum_probs=14.4
Q ss_pred CCCCCCCCChHHHHHHHH
Q 042743 41 GKETDFHIEPELTLELMM 58 (65)
Q Consensus 41 ~~iPeF~IppEiaLELLm 58 (65)
-.+..|.+|+|+|||--.
T Consensus 15 ~~V~gw~~~~EeALe~ar 32 (116)
T 2gdt_A 15 VLVRGFGDSVEEALSEAR 32 (116)
T ss_dssp CSCCCSCSSHHHHHHHHH
T ss_pred eeccCCCCCHHHHHHHHH
Confidence 356789999999999643
No 37
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=25.64 E-value=24 Score=22.39 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=11.1
Q ss_pred CCChHHHHHHHHh
Q 042743 47 HIEPELTLELMMA 59 (65)
Q Consensus 47 ~IppEiaLELLmA 59 (65)
+||||.+|+|...
T Consensus 84 qIPpEe~L~l~~~ 96 (117)
T 2hc5_A 84 EIPPKRWLDFYAA 96 (117)
T ss_dssp EECHHHHHHHHHH
T ss_pred eCChHHHHHHHHH
Confidence 6999999998754
No 38
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=21.88 E-value=96 Score=18.88 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=22.8
Q ss_pred ccchHHHHHHHh-hhhhcccCcccccccccCCCCCCCCChHHHHHHHH
Q 042743 12 ASNDIDVGSEYF-EAVRFVNSLGSVMLSIWGKETDFHIEPELTLELMM 58 (65)
Q Consensus 12 ~S~vLekV~eYl-Yk~rY~~s~~~~~~~~~~~iPeF~IppEiaLELLm 58 (65)
..++-.+|.+|+ |..+...... ...+=+ .+|+++--|+.+
T Consensus 31 ~~~l~~rv~~y~~~~~~~~~~~~------~~~il~-~Lp~~L~~~i~~ 71 (212)
T 3ukn_A 31 PKALAQRMLECFQTTWSVNNGID------VSELLK-DFPDELRADIAM 71 (212)
T ss_dssp CHHHHHHHHHHHHHHCCTGGGCC------CCCTTT-TSCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCCCC------HHHHHH-HcCHHHHHHHHH
Confidence 455667899999 7765433311 012222 577777666654
No 39
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=21.59 E-value=31 Score=24.10 Aligned_cols=22 Identities=14% Similarity=-0.058 Sum_probs=18.2
Q ss_pred ccccceEEeeccchHHHHHHHh
Q 042743 2 KKTRKKVIFHASNDIDVGSEYF 23 (65)
Q Consensus 2 ~~~~~~~~~~~S~vLekV~eYl 23 (65)
.+||+||.|+.++-.+...+|+
T Consensus 246 ~~t~~KI~~~~~~~~~~L~~~i 267 (320)
T 3q8g_A 246 PVTVSKIFILGSSYKKELLKQI 267 (320)
T ss_dssp HHHHHTEEECCTTHHHHHHHHS
T ss_pred HHHhhhEEEeCCCcHHHHHhhC
Confidence 4789999999987677777777
Done!