Query 042750
Match_columns 337
No_of_seqs 328 out of 2030
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:02:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042750.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042750hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 1.9E-18 4E-23 167.2 11.9 78 99-181 204-282 (348)
2 PF13639 zf-RING_2: Ring finge 99.5 2.6E-14 5.7E-19 99.1 2.5 44 129-173 1-44 (44)
3 PHA02929 N1R/p28-like protein; 99.3 1.4E-12 3.1E-17 121.2 5.0 78 99-178 147-228 (238)
4 COG5243 HRD1 HRD ubiquitin lig 99.3 1.8E-11 3.9E-16 118.2 9.5 55 126-181 285-349 (491)
5 PF12678 zf-rbx1: RING-H2 zinc 99.2 9.1E-12 2E-16 95.8 4.0 45 128-173 19-73 (73)
6 COG5540 RING-finger-containing 99.2 1.5E-11 3.3E-16 116.0 3.9 50 128-178 323-373 (374)
7 PLN03208 E3 ubiquitin-protein 99.0 8.3E-10 1.8E-14 99.3 6.1 53 126-182 16-84 (193)
8 cd00162 RING RING-finger (Real 98.9 2E-09 4.3E-14 72.9 3.7 44 130-176 1-45 (45)
9 PF13920 zf-C3HC4_3: Zinc fing 98.8 2.5E-09 5.4E-14 76.0 3.6 46 128-177 2-48 (50)
10 KOG0823 Predicted E3 ubiquitin 98.8 2.9E-09 6.3E-14 97.6 4.9 58 125-186 44-104 (230)
11 PF12861 zf-Apc11: Anaphase-pr 98.8 2.8E-09 6E-14 83.9 3.0 51 128-178 21-83 (85)
12 PF13923 zf-C3HC4_2: Zinc fing 98.8 4.6E-09 9.9E-14 70.9 3.1 39 131-172 1-39 (39)
13 KOG0317 Predicted E3 ubiquitin 98.8 4.3E-09 9.3E-14 99.2 3.5 51 126-180 237-287 (293)
14 PHA02926 zinc finger-like prot 98.7 6.4E-09 1.4E-13 95.0 3.3 54 125-178 167-231 (242)
15 KOG0320 Predicted E3 ubiquitin 98.6 1.6E-08 3.6E-13 89.3 3.2 53 125-179 128-180 (187)
16 KOG0802 E3 ubiquitin ligase [P 98.6 1E-08 2.2E-13 106.4 1.8 51 127-178 290-342 (543)
17 PF14634 zf-RING_5: zinc-RING 98.6 4.2E-08 9.1E-13 68.0 3.2 44 130-174 1-44 (44)
18 PF00097 zf-C3HC4: Zinc finger 98.5 4.4E-08 9.5E-13 66.4 2.5 39 131-172 1-41 (41)
19 smart00184 RING Ring finger. E 98.5 6.7E-08 1.5E-12 63.0 3.2 38 131-172 1-39 (39)
20 smart00504 Ubox Modified RING 98.5 1.6E-07 3.4E-12 69.2 4.2 46 129-178 2-47 (63)
21 PF15227 zf-C3HC4_4: zinc fing 98.5 1.2E-07 2.7E-12 65.2 3.1 38 131-172 1-42 (42)
22 COG5194 APC11 Component of SCF 98.4 1.6E-07 3.4E-12 72.6 3.0 31 149-179 53-83 (88)
23 TIGR00599 rad18 DNA repair pro 98.3 2.7E-07 5.8E-12 91.9 3.6 49 127-179 25-73 (397)
24 KOG1493 Anaphase-promoting com 98.3 1.5E-07 3.2E-12 72.2 0.6 49 129-177 21-81 (84)
25 KOG1734 Predicted RING-contain 98.2 3.3E-07 7.2E-12 85.7 1.2 57 123-180 219-284 (328)
26 COG5219 Uncharacterized conser 98.2 4.3E-07 9.4E-12 96.5 0.8 53 125-177 1466-1523(1525)
27 KOG0828 Predicted E3 ubiquitin 98.1 8.6E-07 1.9E-11 88.8 2.0 50 128-178 571-635 (636)
28 KOG2930 SCF ubiquitin ligase, 98.1 1.4E-06 3.1E-11 70.5 2.5 51 129-179 47-110 (114)
29 PF13445 zf-RING_UBOX: RING-ty 98.1 1.9E-06 4.2E-11 59.6 2.7 34 131-166 1-35 (43)
30 smart00744 RINGv The RING-vari 98.1 2.3E-06 5E-11 60.9 3.1 42 130-173 1-49 (49)
31 COG5574 PEX10 RING-finger-cont 98.1 1.7E-06 3.6E-11 81.0 2.6 52 126-181 213-266 (271)
32 KOG2164 Predicted E3 ubiquitin 98.0 3.5E-06 7.5E-11 85.1 2.6 51 128-182 186-241 (513)
33 PF11793 FANCL_C: FANCL C-term 97.9 2.1E-06 4.6E-11 65.5 0.1 49 129-177 3-66 (70)
34 KOG0287 Postreplication repair 97.9 4.3E-06 9.3E-11 80.6 1.4 48 129-180 24-71 (442)
35 PF04564 U-box: U-box domain; 97.9 1E-05 2.2E-10 62.1 3.1 47 128-178 4-51 (73)
36 TIGR00570 cdk7 CDK-activating 97.8 1.5E-05 3.2E-10 76.8 4.3 53 128-181 3-58 (309)
37 KOG2177 Predicted E3 ubiquitin 97.8 6.7E-06 1.4E-10 75.6 1.7 45 126-174 11-55 (386)
38 KOG0827 Predicted E3 ubiquitin 97.8 8.2E-06 1.8E-10 79.9 1.9 48 129-176 5-55 (465)
39 COG5432 RAD18 RING-finger-cont 97.8 1E-05 2.2E-10 76.6 2.4 46 128-177 25-70 (391)
40 KOG4265 Predicted E3 ubiquitin 97.8 1.3E-05 2.7E-10 78.0 2.9 48 127-178 289-337 (349)
41 KOG0804 Cytoplasmic Zn-finger 97.7 1.5E-05 3.2E-10 79.5 2.1 51 124-177 171-222 (493)
42 KOG1039 Predicted E3 ubiquitin 97.6 2.6E-05 5.7E-10 76.5 2.5 53 126-178 159-222 (344)
43 KOG4172 Predicted E3 ubiquitin 97.6 1.7E-05 3.7E-10 57.2 0.2 46 129-178 8-55 (62)
44 KOG1645 RING-finger-containing 97.5 7.6E-05 1.7E-09 73.7 3.4 49 128-176 4-55 (463)
45 KOG4445 Uncharacterized conser 97.5 4.5E-05 9.8E-10 72.6 1.6 54 126-180 113-189 (368)
46 KOG0311 Predicted E3 ubiquitin 97.4 1.7E-05 3.7E-10 76.9 -1.6 51 127-180 42-93 (381)
47 KOG0825 PHD Zn-finger protein 97.3 5E-05 1.1E-09 79.9 -0.2 51 128-179 123-173 (1134)
48 KOG1785 Tyrosine kinase negati 97.2 0.00028 6E-09 69.6 3.9 48 129-180 370-419 (563)
49 KOG0824 Predicted E3 ubiquitin 97.1 0.00022 4.8E-09 68.1 1.9 50 128-181 7-57 (324)
50 PF14835 zf-RING_6: zf-RING of 97.1 0.00012 2.5E-09 54.8 0.0 47 129-180 8-54 (65)
51 KOG4159 Predicted E3 ubiquitin 96.8 0.00079 1.7E-08 67.4 3.0 50 125-178 81-130 (398)
52 KOG1941 Acetylcholine receptor 96.6 0.0014 3.1E-08 64.6 2.8 47 129-176 366-415 (518)
53 KOG0826 Predicted E3 ubiquitin 96.6 0.0045 9.7E-08 59.9 6.1 48 126-176 298-345 (357)
54 KOG0978 E3 ubiquitin ligase in 96.6 0.00089 1.9E-08 70.8 1.4 50 128-181 643-693 (698)
55 KOG3970 Predicted E3 ubiquitin 96.5 0.0048 1E-07 57.0 5.5 51 128-180 50-108 (299)
56 KOG0297 TNF receptor-associate 96.4 0.0019 4E-08 64.8 2.3 54 126-182 19-72 (391)
57 PF05883 Baculo_RING: Baculovi 96.3 0.0015 3.2E-08 55.8 1.1 35 128-163 26-66 (134)
58 KOG1428 Inhibitor of type V ad 96.2 0.0032 6.9E-08 70.4 3.2 67 107-177 3468-3544(3738)
59 PF11789 zf-Nse: Zinc-finger o 96.2 0.0046 9.9E-08 45.4 2.8 41 128-171 11-53 (57)
60 KOG0801 Predicted E3 ubiquitin 96.1 0.0018 4E-08 56.8 0.7 30 126-156 175-204 (205)
61 KOG1002 Nucleotide excision re 96.0 0.0036 7.8E-08 63.9 2.2 54 122-179 530-588 (791)
62 KOG4692 Predicted E3 ubiquitin 95.9 0.0056 1.2E-07 59.8 2.9 51 124-178 418-468 (489)
63 PF12906 RINGv: RING-variant d 95.7 0.006 1.3E-07 42.9 1.8 41 131-172 1-47 (47)
64 KOG2879 Predicted E3 ubiquitin 95.6 0.0098 2.1E-07 56.4 3.3 49 126-177 237-287 (298)
65 PF10367 Vps39_2: Vacuolar sor 95.5 0.0055 1.2E-07 49.3 1.2 31 128-160 78-108 (109)
66 KOG2660 Locus-specific chromos 95.5 0.0034 7.3E-08 60.8 -0.1 50 127-179 14-63 (331)
67 PHA03096 p28-like protein; Pro 95.5 0.007 1.5E-07 58.2 1.9 46 129-174 179-231 (284)
68 PHA02862 5L protein; Provision 95.3 0.012 2.7E-07 50.8 2.6 47 129-180 3-56 (156)
69 PF14570 zf-RING_4: RING/Ubox 95.2 0.011 2.4E-07 41.9 1.7 45 131-176 1-47 (48)
70 COG5152 Uncharacterized conser 95.2 0.009 1.9E-07 54.2 1.5 46 127-176 195-240 (259)
71 KOG1571 Predicted E3 ubiquitin 95.1 0.014 3E-07 57.3 2.5 45 127-178 304-348 (355)
72 KOG1814 Predicted E3 ubiquitin 95.0 0.013 2.7E-07 58.4 1.9 47 127-174 183-237 (445)
73 KOG1952 Transcription factor N 94.9 0.013 2.8E-07 62.9 1.7 51 125-175 188-245 (950)
74 KOG4739 Uncharacterized protei 94.7 0.011 2.5E-07 55.0 0.7 63 130-196 5-67 (233)
75 KOG3039 Uncharacterized conser 94.6 0.032 7E-07 52.2 3.4 53 128-180 221-273 (303)
76 PHA02825 LAP/PHD finger-like p 94.5 0.035 7.5E-07 48.8 3.3 50 126-179 6-61 (162)
77 COG5222 Uncharacterized conser 94.0 0.032 6.9E-07 53.6 2.2 48 129-179 275-324 (427)
78 PF04641 Rtf2: Rtf2 RING-finge 93.9 0.064 1.4E-06 50.9 4.1 52 125-177 110-161 (260)
79 COG5236 Uncharacterized conser 93.7 0.051 1.1E-06 53.2 3.0 70 103-179 39-110 (493)
80 KOG3268 Predicted E3 ubiquitin 93.7 0.04 8.7E-07 49.3 2.1 30 149-178 189-229 (234)
81 PF08746 zf-RING-like: RING-li 93.6 0.038 8.2E-07 38.2 1.5 41 131-172 1-43 (43)
82 KOG1940 Zn-finger protein [Gen 93.0 0.048 1E-06 52.1 1.7 66 129-199 159-225 (276)
83 KOG1813 Predicted E3 ubiquitin 92.9 0.039 8.4E-07 52.9 0.8 45 128-176 241-285 (313)
84 KOG0827 Predicted E3 ubiquitin 92.9 0.0082 1.8E-07 59.3 -3.8 52 128-180 196-248 (465)
85 PF14447 Prok-RING_4: Prokaryo 92.5 0.067 1.4E-06 38.9 1.4 45 129-179 8-52 (55)
86 KOG4275 Predicted E3 ubiquitin 92.5 0.026 5.7E-07 54.0 -0.9 42 128-177 300-342 (350)
87 KOG4185 Predicted E3 ubiquitin 92.5 0.095 2.1E-06 50.1 2.9 48 128-176 3-54 (296)
88 KOG2932 E3 ubiquitin ligase in 92.1 0.065 1.4E-06 51.8 1.2 43 129-176 91-133 (389)
89 KOG2114 Vacuolar assembly/sort 91.6 0.089 1.9E-06 56.7 1.7 41 129-175 841-881 (933)
90 KOG3161 Predicted E3 ubiquitin 91.4 0.062 1.3E-06 56.3 0.3 44 129-175 12-55 (861)
91 KOG0309 Conserved WD40 repeat- 91.3 0.11 2.3E-06 55.5 1.9 23 149-171 1047-1069(1081)
92 COG5175 MOT2 Transcriptional r 89.9 0.23 4.9E-06 48.7 2.6 55 125-180 11-67 (480)
93 KOG1001 Helicase-like transcri 89.8 0.13 2.9E-06 55.0 1.0 46 129-179 455-502 (674)
94 KOG2034 Vacuolar sorting prote 88.5 0.21 4.7E-06 54.2 1.5 35 127-163 816-850 (911)
95 PF14446 Prok-RING_1: Prokaryo 88.3 0.57 1.2E-05 34.0 3.1 33 129-161 6-38 (54)
96 KOG0298 DEAD box-containing he 88.0 0.17 3.6E-06 56.9 0.3 48 128-178 1153-1200(1394)
97 PF01708 Gemini_mov: Geminivir 86.5 0.73 1.6E-05 36.8 3.0 37 30-66 26-62 (91)
98 KOG1100 Predicted E3 ubiquitin 86.5 0.43 9.4E-06 43.9 2.1 39 131-177 161-200 (207)
99 COG5183 SSM4 Protein involved 86.2 0.64 1.4E-05 50.2 3.4 54 127-182 11-71 (1175)
100 PF10272 Tmpp129: Putative tra 84.3 0.82 1.8E-05 45.5 3.0 27 150-176 311-350 (358)
101 KOG1609 Protein involved in mR 82.2 0.8 1.7E-05 43.6 2.0 51 128-179 78-136 (323)
102 PF07800 DUF1644: Protein of u 81.8 1.8 4E-05 38.1 3.8 33 128-163 2-46 (162)
103 KOG3800 Predicted E3 ubiquitin 81.6 1.2 2.7E-05 42.7 2.9 51 130-181 2-55 (300)
104 COG5220 TFB3 Cdk activating ki 81.1 0.7 1.5E-05 43.4 1.0 51 127-177 9-64 (314)
105 KOG0269 WD40 repeat-containing 79.6 1.5 3.3E-05 47.1 3.1 40 130-171 781-820 (839)
106 PF02439 Adeno_E3_CR2: Adenovi 79.2 3.7 8E-05 27.7 3.7 9 61-69 24-32 (38)
107 PF05290 Baculo_IE-1: Baculovi 78.7 1.6 3.5E-05 37.4 2.4 52 128-179 80-134 (140)
108 KOG2817 Predicted E3 ubiquitin 77.9 7.2 0.00016 39.2 7.0 46 126-172 332-380 (394)
109 KOG0802 E3 ubiquitin ligase [P 77.8 1.3 2.9E-05 46.3 2.0 48 126-181 477-524 (543)
110 KOG4362 Transcriptional regula 76.9 0.72 1.6E-05 49.2 -0.3 47 129-179 22-71 (684)
111 KOG3053 Uncharacterized conser 76.8 1.2 2.5E-05 42.3 1.1 50 126-176 18-81 (293)
112 KOG1812 Predicted E3 ubiquitin 75.9 1.3 2.8E-05 44.5 1.3 37 128-165 146-183 (384)
113 KOG0825 PHD Zn-finger protein 74.9 1.7 3.7E-05 47.0 1.9 53 128-180 96-157 (1134)
114 PF03854 zf-P11: P-11 zinc fin 72.5 1.4 2.9E-05 31.3 0.3 43 130-178 4-47 (50)
115 PF01102 Glycophorin_A: Glycop 72.1 5.7 0.00012 33.6 4.0 21 40-60 65-85 (122)
116 KOG3002 Zn finger protein [Gen 71.2 3.1 6.8E-05 40.4 2.6 44 126-177 46-91 (299)
117 PF03229 Alpha_GJ: Alphavirus 69.6 13 0.00028 31.2 5.5 26 45-70 90-115 (126)
118 KOG3113 Uncharacterized conser 68.6 5.9 0.00013 37.6 3.7 51 126-178 109-159 (293)
119 KOG3899 Uncharacterized conser 67.3 3.1 6.8E-05 40.2 1.6 27 150-176 325-364 (381)
120 KOG1829 Uncharacterized conser 67.0 2.3 4.9E-05 44.9 0.7 42 128-173 511-557 (580)
121 KOG1815 Predicted E3 ubiquitin 65.5 7.5 0.00016 39.7 4.1 52 126-180 68-129 (444)
122 PF13901 DUF4206: Domain of un 65.5 5 0.00011 36.6 2.6 39 129-173 153-196 (202)
123 KOG4718 Non-SMC (structural ma 65.4 3.2 6.9E-05 38.4 1.2 45 129-176 182-226 (235)
124 PF15176 LRR19-TM: Leucine-ric 64.0 13 0.00029 30.3 4.4 31 32-66 11-41 (102)
125 KOG3005 GIY-YIG type nuclease 62.5 4.1 9E-05 38.9 1.4 48 129-176 183-242 (276)
126 PF02891 zf-MIZ: MIZ/SP-RING z 60.9 8.4 0.00018 27.3 2.5 43 129-175 3-50 (50)
127 smart00132 LIM Zinc-binding do 59.4 9.7 0.00021 24.1 2.5 36 131-176 2-37 (39)
128 KOG3842 Adaptor protein Pellin 57.3 12 0.00027 36.6 3.7 55 124-179 337-416 (429)
129 KOG4367 Predicted Zn-finger pr 56.3 5.4 0.00012 40.6 1.1 32 128-163 4-35 (699)
130 PF11980 DUF3481: Domain of un 55.8 8.4 0.00018 30.5 1.9 32 38-69 12-43 (87)
131 smart00249 PHD PHD zinc finger 55.6 8.8 0.00019 25.1 1.8 31 130-161 1-31 (47)
132 KOG2066 Vacuolar assembly/sort 55.2 4.6 0.0001 43.8 0.5 44 128-173 784-831 (846)
133 PF10571 UPF0547: Uncharacteri 54.6 6.7 0.00014 24.1 0.9 23 130-154 2-24 (26)
134 PF05393 Hum_adeno_E3A: Human 54.3 15 0.00033 29.3 3.1 12 58-69 47-58 (94)
135 PLN02400 cellulose synthase 54.1 13 0.00027 42.1 3.6 49 129-177 37-89 (1085)
136 PF00412 LIM: LIM domain; Int 53.5 11 0.00024 26.4 2.1 39 131-179 1-39 (58)
137 PF06024 DUF912: Nucleopolyhed 51.4 5.9 0.00013 32.2 0.4 19 37-55 60-78 (101)
138 PF07975 C1_4: TFIIH C1-like d 49.4 13 0.00028 26.7 1.9 42 131-173 2-50 (51)
139 PF12575 DUF3753: Protein of u 48.9 31 0.00067 26.5 4.0 6 38-43 48-53 (72)
140 PLN02189 cellulose synthase 48.8 17 0.00036 41.0 3.5 49 129-177 35-87 (1040)
141 KOG4323 Polycomb-like PHD Zn-f 47.8 17 0.00036 37.5 3.1 72 111-182 150-231 (464)
142 KOG0824 Predicted E3 ubiquitin 47.6 13 0.00028 36.2 2.1 51 126-179 103-153 (324)
143 PF06906 DUF1272: Protein of u 47.5 25 0.00054 25.8 3.1 45 130-178 7-53 (57)
144 PF00628 PHD: PHD-finger; Int 45.0 12 0.00026 25.8 1.2 42 131-173 2-49 (51)
145 PF08374 Protocadherin: Protoc 45.0 12 0.00027 34.6 1.5 30 37-67 35-64 (221)
146 TIGR00622 ssl1 transcription f 44.9 26 0.00057 29.2 3.3 45 129-173 56-110 (112)
147 PF10577 UPF0560: Uncharacteri 43.4 44 0.00096 36.6 5.6 19 275-293 635-656 (807)
148 KOG1812 Predicted E3 ubiquitin 43.0 13 0.00028 37.4 1.5 43 129-172 307-351 (384)
149 PF07204 Orthoreo_P10: Orthore 42.8 25 0.00055 28.4 2.8 11 60-70 58-69 (98)
150 PF01363 FYVE: FYVE zinc finge 42.8 12 0.00026 27.6 0.9 35 128-162 9-43 (69)
151 PF15102 TMEM154: TMEM154 prot 42.7 6.1 0.00013 34.5 -0.8 10 156-165 127-136 (146)
152 KOG2807 RNA polymerase II tran 42.1 24 0.00052 34.8 3.0 69 102-173 306-374 (378)
153 PF15050 SCIMP: SCIMP protein 40.8 41 0.0009 28.5 3.9 7 37-43 7-13 (133)
154 PF11770 GAPT: GRB2-binding ad 40.7 18 0.0004 31.7 1.8 20 55-74 19-38 (158)
155 KOG3799 Rab3 effector RIM1 and 40.6 5.5 0.00012 34.3 -1.3 45 124-176 61-117 (169)
156 PF13719 zinc_ribbon_5: zinc-r 40.6 17 0.00037 24.0 1.3 26 130-155 4-36 (37)
157 PLN02638 cellulose synthase A 39.7 31 0.00068 39.1 3.9 50 128-177 17-70 (1079)
158 KOG2068 MOT2 transcription fac 39.3 25 0.00054 34.6 2.7 47 129-176 250-297 (327)
159 PF01102 Glycophorin_A: Glycop 37.9 45 0.00098 28.2 3.8 23 37-60 66-88 (122)
160 PF06024 DUF912: Nucleopolyhed 37.3 12 0.00027 30.3 0.3 28 35-62 55-82 (101)
161 PF01299 Lamp: Lysosome-associ 37.2 34 0.00074 33.0 3.4 40 16-57 249-288 (306)
162 PF05454 DAG1: Dystroglycan (D 37.0 11 0.00025 36.5 0.0 9 61-69 164-172 (290)
163 PF14979 TMEM52: Transmembrane 36.8 62 0.0013 28.4 4.4 34 36-69 14-49 (154)
164 KOG3579 Predicted E3 ubiquitin 36.4 17 0.00036 35.2 1.0 38 127-165 267-305 (352)
165 PF13717 zinc_ribbon_4: zinc-r 36.4 25 0.00054 23.1 1.6 26 130-155 4-36 (36)
166 PF02009 Rifin_STEVOR: Rifin/s 36.4 44 0.00095 32.6 3.9 15 45-59 262-276 (299)
167 PRK14710 hypothetical protein; 36.1 29 0.00062 26.7 2.0 26 36-61 6-31 (86)
168 PLN02436 cellulose synthase A 35.8 35 0.00076 38.7 3.5 49 129-177 37-89 (1094)
169 PF14569 zf-UDP: Zinc-binding 35.6 52 0.0011 25.7 3.4 51 128-178 9-63 (80)
170 PF15018 InaF-motif: TRP-inter 35.6 46 0.001 22.5 2.7 24 39-62 8-31 (38)
171 PF02480 Herpes_gE: Alphaherpe 34.7 13 0.00027 38.2 -0.1 20 35-54 348-367 (439)
172 PF04277 OAD_gamma: Oxaloaceta 34.5 63 0.0014 24.4 3.9 18 42-59 6-23 (79)
173 KOG3039 Uncharacterized conser 33.9 27 0.00059 33.2 1.9 36 125-164 40-75 (303)
174 KOG2041 WD40 repeat protein [G 33.6 25 0.00055 38.2 1.9 48 126-177 1129-1185(1189)
175 PRK00523 hypothetical protein; 32.9 1.4E+02 0.0029 23.1 5.3 22 44-65 8-29 (72)
176 PF10717 ODV-E18: Occlusion-de 32.4 59 0.0013 25.8 3.3 14 45-58 30-43 (85)
177 PF02439 Adeno_E3_CR2: Adenovi 32.0 1.1E+02 0.0023 20.7 4.0 17 49-65 16-32 (38)
178 PHA02650 hypothetical protein; 31.5 1.2E+02 0.0027 23.7 4.9 29 36-65 44-72 (81)
179 PF09943 DUF2175: Uncharacteri 31.2 37 0.00079 27.9 2.1 33 129-163 3-35 (101)
180 PHA02819 hypothetical protein; 30.8 1.3E+02 0.0027 23.2 4.7 29 35-64 40-68 (71)
181 PF04423 Rad50_zn_hook: Rad50 30.5 16 0.00034 26.0 -0.1 11 168-178 22-32 (54)
182 PF07010 Endomucin: Endomucin; 30.1 78 0.0017 29.8 4.2 20 40-59 192-211 (259)
183 PF13260 DUF4051: Protein of u 30.1 83 0.0018 22.4 3.4 21 49-69 9-29 (54)
184 PRK01844 hypothetical protein; 29.9 1.1E+02 0.0024 23.5 4.4 23 44-66 7-29 (72)
185 KOG4482 Sarcoglycan complex, a 29.9 98 0.0021 31.2 5.1 40 29-68 284-323 (449)
186 cd00065 FYVE FYVE domain; Zinc 29.8 39 0.00084 23.7 1.8 34 129-162 3-36 (57)
187 PF06937 EURL: EURL protein; 29.7 40 0.00088 32.3 2.4 43 128-170 30-74 (285)
188 smart00064 FYVE Protein presen 29.7 44 0.00095 24.4 2.2 36 128-163 10-45 (68)
189 PF06844 DUF1244: Protein of u 29.5 32 0.0007 26.0 1.4 12 153-164 11-22 (68)
190 PF14654 Epiglycanin_C: Mucin, 29.5 1.1E+02 0.0024 25.0 4.5 30 34-63 14-43 (106)
191 PF12575 DUF3753: Protein of u 29.2 1E+02 0.0022 23.7 4.1 23 35-57 42-64 (72)
192 COG4847 Uncharacterized protei 28.9 43 0.00092 27.2 2.0 34 128-163 6-39 (103)
193 PF12877 DUF3827: Domain of un 28.7 46 0.00099 35.7 2.8 18 31-48 262-279 (684)
194 PF04710 Pellino: Pellino; In 28.1 20 0.00042 36.2 0.0 51 128-179 328-403 (416)
195 COG3813 Uncharacterized protei 27.2 61 0.0013 25.1 2.5 47 131-181 8-56 (84)
196 PLN02915 cellulose synthase A 27.0 57 0.0012 37.0 3.3 50 128-177 15-68 (1044)
197 PF04216 FdhE: Protein involve 27.0 11 0.00024 36.1 -1.9 45 128-173 172-218 (290)
198 cd00350 rubredoxin_like Rubred 26.9 34 0.00075 21.9 1.0 9 166-174 17-25 (33)
199 PF07423 DUF1510: Protein of u 26.9 51 0.0011 30.7 2.5 16 44-59 18-33 (217)
200 PF05605 zf-Di19: Drought indu 26.9 27 0.00058 24.7 0.5 38 129-175 3-40 (54)
201 PF15145 DUF4577: Domain of un 26.8 1.6E+02 0.0034 24.8 5.0 27 37-63 59-85 (128)
202 PHA03164 hypothetical protein; 26.7 1.2E+02 0.0026 23.7 4.0 10 47-56 64-73 (88)
203 PF05510 Sarcoglycan_2: Sarcog 26.0 1.3E+02 0.0028 30.4 5.3 33 36-68 279-311 (386)
204 PHA02975 hypothetical protein; 25.8 1.8E+02 0.004 22.2 4.8 18 37-54 40-57 (69)
205 PF06305 DUF1049: Protein of u 25.5 1.6E+02 0.0034 21.3 4.6 10 38-47 18-27 (68)
206 PHA02844 putative transmembran 25.3 1.4E+02 0.0031 23.1 4.2 28 36-64 43-70 (75)
207 PF05568 ASFV_J13L: African sw 25.1 1.5E+02 0.0032 26.1 4.8 6 12-17 3-8 (189)
208 PRK11827 hypothetical protein; 25.0 25 0.00054 26.1 0.1 20 160-179 2-21 (60)
209 COG5109 Uncharacterized conser 24.4 52 0.0011 32.4 2.1 45 127-172 335-382 (396)
210 PF10812 DUF2561: Protein of u 24.0 1.1E+02 0.0023 28.3 3.9 28 29-56 55-82 (207)
211 PF08113 CoxIIa: Cytochrome c 23.4 1.8E+02 0.0039 19.1 3.8 15 43-57 9-23 (34)
212 KOG3842 Adaptor protein Pellin 23.1 39 0.00084 33.3 1.0 41 128-174 290-349 (429)
213 PF06679 DUF1180: Protein of u 22.5 1.4E+02 0.0031 26.5 4.4 22 38-59 91-112 (163)
214 KOG4185 Predicted E3 ubiquitin 22.5 17 0.00037 34.6 -1.6 47 129-175 208-265 (296)
215 TIGR01478 STEVOR variant surfa 22.4 57 0.0012 31.6 2.0 14 46-59 266-279 (295)
216 PF14311 DUF4379: Domain of un 22.3 55 0.0012 23.2 1.5 22 150-172 34-55 (55)
217 TIGR01477 RIFIN variant surfac 21.9 1.1E+02 0.0024 30.5 3.9 16 45-60 316-331 (353)
218 KOG2979 Protein involved in DN 21.9 51 0.0011 31.4 1.5 42 128-172 176-219 (262)
219 PHA03054 IMV membrane protein; 21.8 2.2E+02 0.0048 21.9 4.6 27 35-62 42-68 (72)
220 PTZ00046 rifin; Provisional 21.5 1.2E+02 0.0025 30.5 3.9 16 45-60 321-336 (358)
221 PF07191 zinc-ribbons_6: zinc- 21.4 10 0.00022 29.1 -2.7 40 129-177 2-41 (70)
222 PLN02195 cellulose synthase A 21.3 1E+02 0.0022 34.9 3.8 50 128-177 6-59 (977)
223 smart00647 IBR In Between Ring 21.3 29 0.00064 24.6 -0.2 21 142-162 38-58 (64)
224 PF11359 gpUL132: Glycoprotein 21.3 88 0.0019 29.1 2.8 30 40-69 53-82 (235)
225 PF04906 Tweety: Tweety; Inte 21.2 80 0.0017 32.0 2.9 7 63-69 43-49 (406)
226 KOG3637 Vitronectin receptor, 21.1 53 0.0011 37.4 1.7 27 38-65 976-1002(1030)
227 PF06750 DiS_P_DiS: Bacterial 20.9 99 0.0021 24.6 2.8 37 129-178 34-70 (92)
228 PF13807 GNVR: G-rich domain o 20.8 2.2E+02 0.0048 21.6 4.7 15 40-54 58-72 (82)
229 PF08693 SKG6: Transmembrane a 20.8 7.2 0.00016 26.6 -3.2 11 46-56 19-29 (40)
230 PF05715 zf-piccolo: Piccolo Z 20.1 78 0.0017 23.5 1.8 15 166-180 2-16 (61)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.9e-18 Score=167.17 Aligned_cols=78 Identities=35% Similarity=0.905 Sum_probs=66.1
Q ss_pred cCCCCHHHHHhCCceeeccccccccCCCCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCC-CCcccccCC
Q 042750 99 TRGLDEAVIRAIPIFQFKKKASRDFGERSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNAN-CPLCRTSIS 177 (337)
Q Consensus 99 ~~gl~~~~i~~lP~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~-CPlCR~~l~ 177 (337)
...+.+..++++|..+|......+ . ...|+||||+|..|+++++|| |+|.||..||+.||..+.+ ||+||+++.
T Consensus 204 ~~r~~k~~l~~~p~~~f~~~~~~~---~-~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 204 RNRLIKRLLKKLPVRTFTKGDDED---A-TDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred hhhhHHHHHhhCCcEEeccccccC---C-CceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 345778899999999999986222 1 168999999999999999999 9999999999999988755 999999886
Q ss_pred CCCC
Q 042750 178 STTT 181 (337)
Q Consensus 178 ~~~~ 181 (337)
....
T Consensus 279 ~~~~ 282 (348)
T KOG4628|consen 279 TDSG 282 (348)
T ss_pred CCCC
Confidence 6543
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.46 E-value=2.6e-14 Score=99.06 Aligned_cols=44 Identities=55% Similarity=1.329 Sum_probs=40.3
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCccc
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCR 173 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR 173 (337)
++|+||+++|..++.+..++ |+|.||.+||.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 37999999999999999998 999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.31 E-value=1.4e-12 Score=121.21 Aligned_cols=78 Identities=31% Similarity=0.712 Sum_probs=60.7
Q ss_pred cCCCCHHHHHhCCceeeccccccccCCCCCCcccccccccccCc----eeEecCCCCccccHHhHHHHHhcCCCCCcccc
Q 042750 99 TRGLDEAVIRAIPIFQFKKKASRDFGERSFCECAVCLNEFQENE----KLRIIPNCGHVFHIDCIDVWLQSNANCPLCRT 174 (337)
Q Consensus 99 ~~gl~~~~i~~lP~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~ 174 (337)
+.+..+..+..+|.+....... .....+.+|+||++.+..++ .+.+++.|+|.||.+||.+|+..+.+||+||.
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~--~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~ 224 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKL--YNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRT 224 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhh--hcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCC
Confidence 4677899999999997665431 12234579999999987653 13455569999999999999999999999999
Q ss_pred cCCC
Q 042750 175 SISS 178 (337)
Q Consensus 175 ~l~~ 178 (337)
.+..
T Consensus 225 ~~~~ 228 (238)
T PHA02929 225 PFIS 228 (238)
T ss_pred EeeE
Confidence 8754
No 4
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.8e-11 Score=118.19 Aligned_cols=55 Identities=31% Similarity=0.953 Sum_probs=45.5
Q ss_pred CCCCcccccccc-cccC---------ceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCCCC
Q 042750 126 RSFCECAVCLNE-FQEN---------EKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISSTTT 181 (337)
Q Consensus 126 ~~~~~C~ICl~~-~~~~---------~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~~~ 181 (337)
.++..|.||+++ |..+ .+.+.+| |||++|.+|++.|++++++||+||.++..+..
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~ifd~~ 349 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVIFDQS 349 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccccccC
Confidence 456789999999 4443 2456788 99999999999999999999999999765544
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.22 E-value=9.1e-12 Score=95.83 Aligned_cols=45 Identities=42% Similarity=1.060 Sum_probs=35.5
Q ss_pred CCcccccccccccC----------ceeEecCCCCccccHHhHHHHHhcCCCCCccc
Q 042750 128 FCECAVCLNEFQEN----------EKLRIIPNCGHVFHIDCIDVWLQSNANCPLCR 173 (337)
Q Consensus 128 ~~~C~ICl~~~~~~----------~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR 173 (337)
++.|+||++.|.+. ..+...+ |||.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 35699999999322 2344444 999999999999999999999997
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.5e-11 Score=115.97 Aligned_cols=50 Identities=46% Similarity=1.215 Sum_probs=45.4
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhc-CCCCCcccccCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS-NANCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CPlCR~~l~~ 178 (337)
.-+|+|||++|-.+++++++| |+|.||..|+++|+.. ...||+||..+.+
T Consensus 323 GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 478999999999999999999 9999999999999985 5669999998853
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.97 E-value=8.3e-10 Score=99.30 Aligned_cols=53 Identities=28% Similarity=0.823 Sum_probs=42.0
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhc----------------CCCCCcccccCCCCCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS----------------NANCPLCRTSISSTTTT 182 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----------------~~~CPlCR~~l~~~~~~ 182 (337)
.++.+|+||++.+.+ ..+++ |||.||..||..|+.. ...||+||..+......
T Consensus 16 ~~~~~CpICld~~~d---PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~Lv 84 (193)
T PLN03208 16 GGDFDCNICLDQVRD---PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLV 84 (193)
T ss_pred CCccCCccCCCcCCC---cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEE
Confidence 456899999999865 34566 9999999999999852 24699999999775543
No 8
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.87 E-value=2e-09 Score=72.89 Aligned_cols=44 Identities=59% Similarity=1.367 Sum_probs=36.3
Q ss_pred cccccccccccCceeEecCCCCccccHHhHHHHHhc-CCCCCcccccC
Q 042750 130 ECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS-NANCPLCRTSI 176 (337)
Q Consensus 130 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CPlCR~~l 176 (337)
+|+||++.+ .+.+...+ |+|.||..|++.|+.. +..||+|+..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 33455555 9999999999999987 77799998764
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.84 E-value=2.5e-09 Score=76.04 Aligned_cols=46 Identities=33% Similarity=0.950 Sum_probs=39.0
Q ss_pred CCcccccccccccCceeEecCCCCcc-ccHHhHHHHHhcCCCCCcccccCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHV-FHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
+..|.||++.... +..+| |||. |+..|+..|+.....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 3679999998654 77788 9999 999999999999999999999874
No 10
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2.9e-09 Score=97.58 Aligned_cols=58 Identities=31% Similarity=0.812 Sum_probs=45.4
Q ss_pred CCCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcC---CCCCcccccCCCCCCCCCCC
Q 042750 125 ERSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSN---ANCPLCRTSISSTTTTPTTF 186 (337)
Q Consensus 125 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~---~~CPlCR~~l~~~~~~~~~~ 186 (337)
.....+|.|||+.-++ .+++. |||.||..||.+||+.+ +.||+||..|......|.+.
T Consensus 44 ~~~~FdCNICLd~akd---PVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKD---PVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCCceeeeeeccccCC---CEEee-cccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 4567899999998544 34554 99999999999999864 44899999998877655433
No 11
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.80 E-value=2.8e-09 Score=83.90 Aligned_cols=51 Identities=29% Similarity=0.723 Sum_probs=39.0
Q ss_pred CCcccccccccccC--------c-eeEecCCCCccccHHhHHHHHhc---CCCCCcccccCCC
Q 042750 128 FCECAVCLNEFQEN--------E-KLRIIPNCGHVFHIDCIDVWLQS---NANCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~~--------~-~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CPlCR~~l~~ 178 (337)
++.|.||...|... + -..++..|+|.||.+||.+|+.+ +..||+||+.+..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 57899999999732 1 12233469999999999999986 4679999998743
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.78 E-value=4.6e-09 Score=70.91 Aligned_cols=39 Identities=41% Similarity=1.236 Sum_probs=32.6
Q ss_pred ccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcc
Q 042750 131 CAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLC 172 (337)
Q Consensus 131 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlC 172 (337)
|+||++.+.+ .+..++ |||.|+..||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999876 345666 99999999999999998899998
No 13
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=4.3e-09 Score=99.17 Aligned_cols=51 Identities=33% Similarity=0.866 Sum_probs=42.8
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISSTT 180 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~~ 180 (337)
.....|.+||+.... ...+| |||+||..||..|......||+||....+..
T Consensus 237 ~a~~kC~LCLe~~~~---pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 237 EATRKCSLCLENRSN---PSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCceEEEecCCCC---CCcCc-CcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 344789999999766 44567 9999999999999999999999999886544
No 14
>PHA02926 zinc finger-like protein; Provisional
Probab=98.73 E-value=6.4e-09 Score=94.98 Aligned_cols=54 Identities=30% Similarity=0.850 Sum_probs=41.1
Q ss_pred CCCCCcccccccccccC-----ceeEecCCCCccccHHhHHHHHhcC------CCCCcccccCCC
Q 042750 125 ERSFCECAVCLNEFQEN-----EKLRIIPNCGHVFHIDCIDVWLQSN------ANCPLCRTSISS 178 (337)
Q Consensus 125 ~~~~~~C~ICl~~~~~~-----~~~~~lp~C~H~FH~~Ci~~Wl~~~------~~CPlCR~~l~~ 178 (337)
...+.+|+||||...++ ....+|+.|+|.||..||..|...+ .+||+||.....
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 34457899999986432 2344677799999999999999753 359999987753
No 15
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.6e-08 Score=89.28 Aligned_cols=53 Identities=32% Similarity=0.794 Sum_probs=43.4
Q ss_pred CCCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCC
Q 042750 125 ERSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISST 179 (337)
Q Consensus 125 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~ 179 (337)
.....-|+|||+.+.+.. .+-.+|||+||..||+..+.....||+|++.|...
T Consensus 128 ~~~~~~CPiCl~~~sek~--~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKV--PVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred cccccCCCceecchhhcc--ccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 344478999999987753 34346999999999999999999999999977543
No 16
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1e-08 Score=106.36 Aligned_cols=51 Identities=35% Similarity=0.944 Sum_probs=44.2
Q ss_pred CCCcccccccccccCce--eEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 127 SFCECAVCLNEFQENEK--LRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~--~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
.+..|+||+|++..+.. ...+| |+|+||..|+..|+++.++||.||..+..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 35789999999988754 67788 99999999999999999999999994443
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.58 E-value=4.2e-08 Score=68.01 Aligned_cols=44 Identities=30% Similarity=0.971 Sum_probs=37.7
Q ss_pred cccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccc
Q 042750 130 ECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRT 174 (337)
Q Consensus 130 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~ 174 (337)
.|.||++.|.......+++ |||+|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999995556677776 9999999999999866778999985
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.54 E-value=4.4e-08 Score=66.42 Aligned_cols=39 Identities=44% Similarity=1.314 Sum_probs=32.9
Q ss_pred ccccccccccCceeEecCCCCccccHHhHHHHHh--cCCCCCcc
Q 042750 131 CAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQ--SNANCPLC 172 (337)
Q Consensus 131 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~--~~~~CPlC 172 (337)
|+||++.+... ..+++ |||.|+..||.+|+. ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998664 34666 999999999999998 45669998
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.54 E-value=6.7e-08 Score=62.98 Aligned_cols=38 Identities=45% Similarity=1.285 Sum_probs=32.1
Q ss_pred ccccccccccCceeEecCCCCccccHHhHHHHHh-cCCCCCcc
Q 042750 131 CAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQ-SNANCPLC 172 (337)
Q Consensus 131 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CPlC 172 (337)
|+||++.. .....++ |+|.||..|++.|+. .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999983 3466777 999999999999998 56779987
No 20
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.48 E-value=1.6e-07 Score=69.20 Aligned_cols=46 Identities=22% Similarity=0.567 Sum_probs=39.8
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
..|+||++.+.+. .+++ |||+|+..||.+|+..+.+||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 4799999998774 4566 99999999999999998999999988743
No 21
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.46 E-value=1.2e-07 Score=65.21 Aligned_cols=38 Identities=34% Similarity=0.990 Sum_probs=28.7
Q ss_pred ccccccccccCceeEecCCCCccccHHhHHHHHhcC----CCCCcc
Q 042750 131 CAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSN----ANCPLC 172 (337)
Q Consensus 131 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CPlC 172 (337)
|+||++.|.+ ...++ |||.|+..||..|.+.. ..||.|
T Consensus 1 CpiC~~~~~~---Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999977 45666 99999999999998763 359988
No 22
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.42 E-value=1.6e-07 Score=72.62 Aligned_cols=31 Identities=39% Similarity=0.834 Sum_probs=28.1
Q ss_pred CCCccccHHhHHHHHhcCCCCCcccccCCCC
Q 042750 149 NCGHVFHIDCIDVWLQSNANCPLCRTSISST 179 (337)
Q Consensus 149 ~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~ 179 (337)
.|+|.||.+||.+||..+..||+||++....
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 5999999999999999999999999987543
No 23
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.35 E-value=2.7e-07 Score=91.89 Aligned_cols=49 Identities=29% Similarity=0.680 Sum_probs=41.7
Q ss_pred CCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCC
Q 042750 127 SFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISST 179 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~ 179 (337)
....|+||++.|... .+++ |+|.||..||..|+.....||+||..+...
T Consensus 25 ~~l~C~IC~d~~~~P---vitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 25 TSLRCHICKDFFDVP---VLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred cccCCCcCchhhhCc---cCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 447899999998664 3566 999999999999999888899999987654
No 24
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.5e-07 Score=72.20 Aligned_cols=49 Identities=31% Similarity=0.761 Sum_probs=36.7
Q ss_pred CcccccccccccC---------ceeEecCCCCccccHHhHHHHHhcC---CCCCcccccCC
Q 042750 129 CECAVCLNEFQEN---------EKLRIIPNCGHVFHIDCIDVWLQSN---ANCPLCRTSIS 177 (337)
Q Consensus 129 ~~C~ICl~~~~~~---------~~~~~lp~C~H~FH~~Ci~~Wl~~~---~~CPlCR~~l~ 177 (337)
..|.||.-.|... +-..++-.|.|.||.+||.+|+... .-||+||+...
T Consensus 21 e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 21 ETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 4899999998642 2222333599999999999999753 44999998764
No 25
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=3.3e-07 Score=85.72 Aligned_cols=57 Identities=28% Similarity=0.597 Sum_probs=44.9
Q ss_pred cCCCCCCcccccccccccCc-------eeEecCCCCccccHHhHHHHH--hcCCCCCcccccCCCCC
Q 042750 123 FGERSFCECAVCLNEFQENE-------KLRIIPNCGHVFHIDCIDVWL--QSNANCPLCRTSISSTT 180 (337)
Q Consensus 123 ~~~~~~~~C~ICl~~~~~~~-------~~~~lp~C~H~FH~~Ci~~Wl--~~~~~CPlCR~~l~~~~ 180 (337)
....++..|+||-..+.... ++-.|. |+|+||..||+-|- ..+++||-|+..+....
T Consensus 219 tkhl~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 219 TKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred CCCCCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence 34456789999998886554 566676 99999999999995 45788999999886543
No 26
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.18 E-value=4.3e-07 Score=96.46 Aligned_cols=53 Identities=32% Similarity=0.784 Sum_probs=40.2
Q ss_pred CCCCCcccccccccccCc---eeEecCCCCccccHHhHHHHHhc--CCCCCcccccCC
Q 042750 125 ERSFCECAVCLNEFQENE---KLRIIPNCGHVFHIDCIDVWLQS--NANCPLCRTSIS 177 (337)
Q Consensus 125 ~~~~~~C~ICl~~~~~~~---~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CPlCR~~l~ 177 (337)
-.+..+|+||+..+..-+ .-...+.|.|.||..|+-+|+.+ +.+||+||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 355689999999886321 11223469999999999999976 667999998764
No 27
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=8.6e-07 Score=88.83 Aligned_cols=50 Identities=26% Similarity=0.869 Sum_probs=38.6
Q ss_pred CCccccccccccc---Cc-----------eeEecCCCCccccHHhHHHHHhcC-CCCCcccccCCC
Q 042750 128 FCECAVCLNEFQE---NE-----------KLRIIPNCGHVFHIDCIDVWLQSN-ANCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~---~~-----------~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CPlCR~~l~~ 178 (337)
..+|+||+.++.- +. ...++| |.|+||..|+..|+... -.||+||.++.+
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4689999998742 11 123457 99999999999999954 489999998853
No 28
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.4e-06 Score=70.45 Aligned_cols=51 Identities=31% Similarity=0.658 Sum_probs=38.4
Q ss_pred Ccccccccccc-------------cCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCC
Q 042750 129 CECAVCLNEFQ-------------ENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISST 179 (337)
Q Consensus 129 ~~C~ICl~~~~-------------~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~ 179 (337)
+.|+||..-+- .++-+..--.|+|.||..||.+||+++..||+|.+.+...
T Consensus 47 DnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~q 110 (114)
T KOG2930|consen 47 DNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVFQ 110 (114)
T ss_pred chhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeEe
Confidence 57999876542 1222333336999999999999999999999998877544
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.11 E-value=1.9e-06 Score=59.64 Aligned_cols=34 Identities=35% Similarity=0.928 Sum_probs=21.6
Q ss_pred ccccccccccCc-eeEecCCCCccccHHhHHHHHhcC
Q 042750 131 CAVCLNEFQENE-KLRIIPNCGHVFHIDCIDVWLQSN 166 (337)
Q Consensus 131 C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~ 166 (337)
|+||.+ |...+ ...+|+ |||+|+.+||++|+...
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 75544 567788 99999999999999853
No 30
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.11 E-value=2.3e-06 Score=60.88 Aligned_cols=42 Identities=26% Similarity=0.913 Sum_probs=32.4
Q ss_pred cccccccccccCceeEecCCCC-----ccccHHhHHHHHhc--CCCCCccc
Q 042750 130 ECAVCLNEFQENEKLRIIPNCG-----HVFHIDCIDVWLQS--NANCPLCR 173 (337)
Q Consensus 130 ~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~Ci~~Wl~~--~~~CPlCR 173 (337)
.|.||++. .+++...+.| |. |.+|..|+.+|+.. +.+||+|+
T Consensus 1 ~CrIC~~~-~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCC-CCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48999993 3444455788 74 89999999999965 45799995
No 31
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.7e-06 Score=80.99 Aligned_cols=52 Identities=31% Similarity=0.830 Sum_probs=41.4
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHH-HHhcCCC-CCcccccCCCCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDV-WLQSNAN-CPLCRTSISSTTT 181 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~-Wl~~~~~-CPlCR~~l~~~~~ 181 (337)
..+..|+||++.... ...++ |||+||..||.. |-..+.- ||+||+.+.+...
T Consensus 213 ~~d~kC~lC~e~~~~---ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEV---PSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCC---ccccc-ccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 446789999998655 45566 999999999999 9766655 9999998866543
No 32
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=3.5e-06 Score=85.14 Aligned_cols=51 Identities=29% Similarity=0.667 Sum_probs=39.1
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhc-----CCCCCcccccCCCCCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS-----NANCPLCRTSISSTTTT 182 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CPlCR~~l~~~~~~ 182 (337)
+..|+|||+...... .+ .|||+||..||-.++.. ...||+||..|......
T Consensus 186 ~~~CPICL~~~~~p~---~t-~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~ 241 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPV---RT-NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLL 241 (513)
T ss_pred CCcCCcccCCCCccc---cc-ccCceeeHHHHHHHHhhhcccCCccCCchhhhcccccee
Confidence 578999999965532 22 49999999999887754 35599999999775543
No 33
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.93 E-value=2.1e-06 Score=65.52 Aligned_cols=49 Identities=33% Similarity=0.865 Sum_probs=23.7
Q ss_pred CcccccccccccCc-e-eEecC--CCCccccHHhHHHHHhc----C-------CCCCcccccCC
Q 042750 129 CECAVCLNEFQENE-K-LRIIP--NCGHVFHIDCIDVWLQS----N-------ANCPLCRTSIS 177 (337)
Q Consensus 129 ~~C~ICl~~~~~~~-~-~~~lp--~C~H~FH~~Ci~~Wl~~----~-------~~CPlCR~~l~ 177 (337)
.+|.||++.+..++ . ..+-+ .|++.||..||.+||.. + .+||.|+.+|.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 57999999876332 2 22222 69999999999999963 1 13999998874
No 34
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.89 E-value=4.3e-06 Score=80.62 Aligned_cols=48 Identities=29% Similarity=0.775 Sum_probs=41.9
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISSTT 180 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~~ 180 (337)
..|.||.+.|.. ..++| |+|.||.-||+.+|..+..||.|+.++....
T Consensus 24 LRC~IC~eyf~i---p~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 24 LRCGICFEYFNI---PMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESD 71 (442)
T ss_pred HHHhHHHHHhcC---ceecc-ccchHHHHHHHHHhccCCCCCceecccchhh
Confidence 579999999977 45667 9999999999999999999999998886643
No 35
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.88 E-value=1e-05 Score=62.08 Aligned_cols=47 Identities=23% Similarity=0.538 Sum_probs=36.3
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhc-CCCCCcccccCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS-NANCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CPlCR~~l~~ 178 (337)
...|+||.+.|.+ ..++| |||.|...||..|+.. +.+||+|+..+..
T Consensus 4 ~f~CpIt~~lM~d---PVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMRD---PVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-SS---EEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhhC---ceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 4689999999977 45677 9999999999999998 8889999988854
No 36
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.84 E-value=1.5e-05 Score=76.83 Aligned_cols=53 Identities=25% Similarity=0.634 Sum_probs=38.7
Q ss_pred CCcccccccc-cccCc-eeEecCCCCccccHHhHHHHHh-cCCCCCcccccCCCCCC
Q 042750 128 FCECAVCLNE-FQENE-KLRIIPNCGHVFHIDCIDVWLQ-SNANCPLCRTSISSTTT 181 (337)
Q Consensus 128 ~~~C~ICl~~-~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CPlCR~~l~~~~~ 181 (337)
+..|+||..+ |...+ ++.+.+ |||.||..||+..+. ....||.|+..+.....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNNF 58 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhhc
Confidence 3579999996 33333 333334 999999999999654 45679999998877653
No 37
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=6.7e-06 Score=75.62 Aligned_cols=45 Identities=33% Similarity=0.877 Sum_probs=38.6
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccc
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRT 174 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~ 174 (337)
.+...|+||++.|... .++| |+|.||..||..|......||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence 3457899999999887 6777 9999999999999885567999993
No 38
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=8.2e-06 Score=79.91 Aligned_cols=48 Identities=33% Similarity=1.039 Sum_probs=35.8
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhc---CCCCCcccccC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS---NANCPLCRTSI 176 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CPlCR~~l 176 (337)
..|.||.+-+-....+.-+-.|||+||..|+..|+.. +.+||+|+-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 5799995444444455544469999999999999986 45799999433
No 39
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.80 E-value=1e-05 Score=76.63 Aligned_cols=46 Identities=28% Similarity=0.628 Sum_probs=38.8
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
...|-||-+-|... ..++ |||.||.-||...|..+..||+||.+--
T Consensus 25 ~lrC~IC~~~i~ip---~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 25 MLRCRICDCRISIP---CETT-CGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred HHHhhhhhheeecc---eecc-cccchhHHHHHHHhcCCCCCccccccHH
Confidence 36799999988663 3445 9999999999999999999999997643
No 40
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=1.3e-05 Score=78.05 Aligned_cols=48 Identities=33% Similarity=0.792 Sum_probs=41.4
Q ss_pred CCCcccccccccccCceeEecCCCCcc-ccHHhHHHHHhcCCCCCcccccCCC
Q 042750 127 SFCECAVCLNEFQENEKLRIIPNCGHV-FHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
...+|.|||.+-.+ +.+|| |.|. .|..|-+.....++.||+||+++..
T Consensus 289 ~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 289 SGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred CCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 35789999999554 78899 9998 9999999987778899999999854
No 41
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.72 E-value=1.5e-05 Score=79.46 Aligned_cols=51 Identities=33% Similarity=0.855 Sum_probs=40.5
Q ss_pred CCCCCCcccccccccccCc-eeEecCCCCccccHHhHHHHHhcCCCCCcccccCC
Q 042750 124 GERSFCECAVCLNEFQENE-KLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 124 ~~~~~~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
+..+-.+|+||||-+.... .++... |.|.||..|+..|- ..+||+||....
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeee-cccccchHHHhhcc--cCcChhhhhhcC
Confidence 3344578999999997654 345555 99999999999995 468999998766
No 42
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=2.6e-05 Score=76.46 Aligned_cols=53 Identities=38% Similarity=0.941 Sum_probs=41.0
Q ss_pred CCCCcccccccccccCc----eeEecCCCCccccHHhHHHHHh--c-----CCCCCcccccCCC
Q 042750 126 RSFCECAVCLNEFQENE----KLRIIPNCGHVFHIDCIDVWLQ--S-----NANCPLCRTSISS 178 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~Ci~~Wl~--~-----~~~CPlCR~~l~~ 178 (337)
..+.+|.||++...+.. ...++|+|.|.||..||+.|-. . .+.||.||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 44678999999975543 2446688999999999999973 3 4679999987644
No 43
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=1.7e-05 Score=57.24 Aligned_cols=46 Identities=26% Similarity=0.692 Sum_probs=34.4
Q ss_pred CcccccccccccCceeEecCCCCcc-ccHHhHH-HHHhcCCCCCcccccCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHV-FHIDCID-VWLQSNANCPLCRTSISS 178 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~-~Wl~~~~~CPlCR~~l~~ 178 (337)
.+|.||+|.-.+. ++..|||. .+.+|-. .|-..+..||+||+++..
T Consensus 8 dECTICye~pvds----VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPVDS----VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcchH----HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 7899999984432 23359998 8888854 554578899999998743
No 44
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=7.6e-05 Score=73.70 Aligned_cols=49 Identities=31% Similarity=0.857 Sum_probs=37.4
Q ss_pred CCcccccccccccC-ceeEecCCCCccccHHhHHHHHhc--CCCCCcccccC
Q 042750 128 FCECAVCLNEFQEN-EKLRIIPNCGHVFHIDCIDVWLQS--NANCPLCRTSI 176 (337)
Q Consensus 128 ~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CPlCR~~l 176 (337)
..+|+||++.+... +.-.+.+.|||.|..+||+.||.. ...||.|...-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 36899999998754 444455579999999999999953 23499996543
No 45
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.47 E-value=4.5e-05 Score=72.62 Aligned_cols=54 Identities=28% Similarity=0.748 Sum_probs=44.2
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHh-----------------------cCCCCCcccccCCCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQ-----------------------SNANCPLCRTSISSTT 180 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----------------------~~~~CPlCR~~l~~~~ 180 (337)
....+|.|||.-|.+++...+++ |.|.||..|+.++|. ....||+||..|....
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~ 189 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE 189 (368)
T ss_pred CCCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence 34568999999999999888898 999999999988762 1234999999886654
No 46
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=1.7e-05 Score=76.94 Aligned_cols=51 Identities=33% Similarity=0.653 Sum_probs=42.1
Q ss_pred CCCcccccccccccCceeEecCCCCccccHHhHHHHHhc-CCCCCcccccCCCCC
Q 042750 127 SFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS-NANCPLCRTSISSTT 180 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CPlCR~~l~~~~ 180 (337)
.+..|+|||+-+.. .+..+.|.|-||.+||..-+.. +++||.||+.+....
T Consensus 42 ~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 42 IQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred hhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 35789999999866 4555679999999999988865 778999999887654
No 47
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.30 E-value=5e-05 Score=79.91 Aligned_cols=51 Identities=20% Similarity=0.498 Sum_probs=42.0
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISST 179 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~ 179 (337)
...|++|+..+.++......+ |+|.||..||+.|-..-.+||+||......
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhee
Confidence 457999999887766555555 999999999999999999999999865443
No 48
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.22 E-value=0.00028 Score=69.65 Aligned_cols=48 Identities=33% Similarity=0.962 Sum_probs=39.8
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhc--CCCCCcccccCCCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS--NANCPLCRTSISSTT 180 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CPlCR~~l~~~~ 180 (337)
.-|.||-|. +..+++-| |||..|..|+..|-.. .++||.||..|....
T Consensus 370 eLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 469999886 44588888 9999999999999744 578999999986654
No 49
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00022 Score=68.09 Aligned_cols=50 Identities=30% Similarity=0.483 Sum_probs=39.1
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhc-CCCCCcccccCCCCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS-NANCPLCRTSISSTTT 181 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CPlCR~~l~~~~~ 181 (337)
..+|+||+...-- ...++ |+|.||..||+--... ..+|++||.++.....
T Consensus 7 ~~eC~IC~nt~n~---Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 7 KKECLICYNTGNC---PVNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDSTID 57 (324)
T ss_pred CCcceeeeccCCc---Ccccc-ccchhhhhhhcchhhcCCCCCceecCCCCcchh
Confidence 4689999998533 34566 9999999999977665 4569999999977643
No 50
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.11 E-value=0.00012 Score=54.82 Aligned_cols=47 Identities=26% Similarity=0.740 Sum_probs=23.4
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISSTT 180 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~~ 180 (337)
..|++|.+.+.+. +. +.+|.|+|+..||..-+. ..||+|+.+....+
T Consensus 8 LrCs~C~~~l~~p--v~-l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 8 LRCSICFDILKEP--VC-LGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQD 54 (65)
T ss_dssp TS-SSS-S--SS---B----SSS--B-TTTGGGGTT--TB-SSS--B-S-SS
T ss_pred cCCcHHHHHhcCC--ce-eccCccHHHHHHhHHhcC--CCCCCcCChHHHHH
Confidence 4699999998664 33 336999999999988554 34999988764433
No 51
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.00079 Score=67.43 Aligned_cols=50 Identities=38% Similarity=0.871 Sum_probs=41.9
Q ss_pred CCCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 125 ERSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 125 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
...+.+|.||+..+.. ..++| |||.||..||++-+....-||+||..+..
T Consensus 81 ~~sef~c~vc~~~l~~---pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYP---PVVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCC---Ccccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 3567899999888766 45567 99999999999988777779999998865
No 52
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.58 E-value=0.0014 Score=64.64 Aligned_cols=47 Identities=34% Similarity=0.877 Sum_probs=38.2
Q ss_pred CcccccccccccC-ceeEecCCCCccccHHhHHHHHhcC--CCCCcccccC
Q 042750 129 CECAVCLNEFQEN-EKLRIIPNCGHVFHIDCIDVWLQSN--ANCPLCRTSI 176 (337)
Q Consensus 129 ~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CPlCR~~l 176 (337)
.-|..|-+.+-.. +.+..+| |.|+||..|+.+.|.++ .+||.||+-.
T Consensus 366 L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 366 LYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred hhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 5699998887544 4677888 99999999999999775 4599999433
No 53
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0045 Score=59.94 Aligned_cols=48 Identities=27% Similarity=0.474 Sum_probs=37.3
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSI 176 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l 176 (337)
.....|+||+..-.++..+ ..-|-+||..||..++..++.||+=..+.
T Consensus 298 ~~~~~CpvClk~r~Nptvl---~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVL---EVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCceE---EecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 4457899999997765322 22699999999999999999999864443
No 54
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.00089 Score=70.84 Aligned_cols=50 Identities=26% Similarity=0.842 Sum_probs=38.6
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhc-CCCCCcccccCCCCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS-NANCPLCRTSISSTTT 181 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CPlCR~~l~~~~~ 181 (337)
-..|++|-.-+.+ . ++++|+|+||..||..-+.. +..||.|.+...+.+.
T Consensus 643 ~LkCs~Cn~R~Kd---~-vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD---A-VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred ceeCCCccCchhh---H-HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 3689999866544 2 33469999999999999865 6679999988866543
No 55
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0048 Score=56.95 Aligned_cols=51 Identities=24% Similarity=0.647 Sum_probs=42.6
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhc--------CCCCCcccccCCCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS--------NANCPLCRTSISSTT 180 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--------~~~CPlCR~~l~~~~ 180 (337)
..-|..|-..+..++.++.. |-|.||..|+++|-.. ...||.|...|.+..
T Consensus 50 ~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI 108 (299)
T ss_pred CCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence 35699999999999988765 9999999999999743 234999999998764
No 56
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.37 E-value=0.0019 Score=64.82 Aligned_cols=54 Identities=22% Similarity=0.643 Sum_probs=44.0
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCCCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISSTTTT 182 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~~~~ 182 (337)
..+..|++|...+.+.-.. . .|||.||..|+..|+..+..||.|+..+......
T Consensus 19 ~~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 4457899999998776432 3 4999999999999999999999998887665543
No 57
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.32 E-value=0.0015 Score=55.83 Aligned_cols=35 Identities=26% Similarity=0.722 Sum_probs=28.6
Q ss_pred CCcccccccccccCceeEecCCCC------ccccHHhHHHHH
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCG------HVFHIDCIDVWL 163 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~------H~FH~~Ci~~Wl 163 (337)
..+|+||++.+...+.++.++ |+ |.||.+|+.+|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHH
Confidence 368999999998855566666 65 789999999994
No 58
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.23 E-value=0.0032 Score=70.37 Aligned_cols=67 Identities=24% Similarity=0.603 Sum_probs=47.6
Q ss_pred HHhCCceeeccccccccCCCCCCcccccccccccCceeEecCCCCccccHHhHHHHHhc-----C-----CCCCcccccC
Q 042750 107 IRAIPIFQFKKKASRDFGERSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS-----N-----ANCPLCRTSI 176 (337)
Q Consensus 107 i~~lP~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~-----~~CPlCR~~l 176 (337)
-.-||-+..++.. .....++.|.||+.+--.....+.|. |+|+||..|.+.-|++ + -.||+|+.+|
T Consensus 3468 E~CLPCl~Cdks~---tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3468 EHCLPCLHCDKSA---TKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred hhcccccccChhh---hhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 3446666655543 23455688999998866666677775 9999999998876653 2 2499999877
Q ss_pred C
Q 042750 177 S 177 (337)
Q Consensus 177 ~ 177 (337)
.
T Consensus 3544 n 3544 (3738)
T KOG1428|consen 3544 N 3544 (3738)
T ss_pred h
Confidence 4
No 59
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.16 E-value=0.0046 Score=45.37 Aligned_cols=41 Identities=27% Similarity=0.728 Sum_probs=27.2
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhc--CCCCCc
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS--NANCPL 171 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CPl 171 (337)
...|+|.+..|.+. ++-. .|+|+|-...|..|++. ...||+
T Consensus 11 ~~~CPiT~~~~~~P--V~s~-~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDP--VKSK-KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSE--EEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCC--cCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 46899999998764 5444 49999999999999944 344998
No 60
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0018 Score=56.82 Aligned_cols=30 Identities=23% Similarity=0.748 Sum_probs=27.0
Q ss_pred CCCCcccccccccccCceeEecCCCCccccH
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHI 156 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~ 156 (337)
+...+|.||||++..++.+..|| |-.+||+
T Consensus 175 ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 34468999999999999999999 9999996
No 61
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.00 E-value=0.0036 Score=63.95 Aligned_cols=54 Identities=26% Similarity=0.596 Sum_probs=40.4
Q ss_pred ccCCCCCCcccccccccccCceeEecCCCCccccHHhHHHHHhc-----CCCCCcccccCCCC
Q 042750 122 DFGERSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS-----NANCPLCRTSISST 179 (337)
Q Consensus 122 ~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CPlCR~~l~~~ 179 (337)
.....+..+|.+|-+.-++ ..... |.|.||..||.++... +.+||.|...+.-.
T Consensus 530 ~~enk~~~~C~lc~d~aed---~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 530 PDENKGEVECGLCHDPAED---YIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred CccccCceeecccCChhhh---hHhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 3345566799999987443 33444 9999999999998753 67899998877554
No 62
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.0056 Score=59.82 Aligned_cols=51 Identities=22% Similarity=0.473 Sum_probs=41.7
Q ss_pred CCCCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 124 GERSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 124 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
...++..|+||+..- ......| |+|.-|.+||.+-|.+.+.|=.|++.+..
T Consensus 418 p~sEd~lCpICyA~p---i~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGP---INAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CCcccccCcceeccc---chhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 445678999998763 2244567 99999999999999999999999998754
No 63
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.74 E-value=0.006 Score=42.92 Aligned_cols=41 Identities=34% Similarity=0.955 Sum_probs=26.5
Q ss_pred ccccccccccCceeEecC-CCCc---cccHHhHHHHHhc--CCCCCcc
Q 042750 131 CAVCLNEFQENEKLRIIP-NCGH---VFHIDCIDVWLQS--NANCPLC 172 (337)
Q Consensus 131 C~ICl~~~~~~~~~~~lp-~C~H---~FH~~Ci~~Wl~~--~~~CPlC 172 (337)
|-||++.-..+. ..+.| .|.- ..|..|+.+|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 779999876655 34466 2333 6899999999974 5669987
No 64
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.0098 Score=56.40 Aligned_cols=49 Identities=31% Similarity=0.545 Sum_probs=36.8
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhc--CCCCCcccccCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS--NANCPLCRTSIS 177 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CPlCR~~l~ 177 (337)
..+.+|++|-+.-..+ ....+ |+|+||..||..-+.. ..+||.|-..+.
T Consensus 237 t~~~~C~~Cg~~PtiP--~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIP--HVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCC--eeecc-ccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4567999998874443 33444 9999999999987654 367999987765
No 65
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.54 E-value=0.0055 Score=49.33 Aligned_cols=31 Identities=35% Similarity=0.890 Sum_probs=26.2
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHH
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCID 160 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~ 160 (337)
...|++|-..+.. ....+.| |||+||..|++
T Consensus 78 ~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 4679999999977 5677788 99999999975
No 66
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.54 E-value=0.0034 Score=60.84 Aligned_cols=50 Identities=26% Similarity=0.622 Sum_probs=40.2
Q ss_pred CCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCC
Q 042750 127 SFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISST 179 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~ 179 (337)
..-+|.+|-..|-+...+ . .|-|.||..||...|....+||.|...+-..
T Consensus 14 ~~itC~LC~GYliDATTI--~-eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTI--T-ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred cceehhhccceeecchhH--H-HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 346899998887664322 3 4999999999999999999999998777543
No 67
>PHA03096 p28-like protein; Provisional
Probab=95.48 E-value=0.007 Score=58.19 Aligned_cols=46 Identities=26% Similarity=0.639 Sum_probs=33.5
Q ss_pred CcccccccccccC----ceeEecCCCCccccHHhHHHHHhc---CCCCCcccc
Q 042750 129 CECAVCLNEFQEN----EKLRIIPNCGHVFHIDCIDVWLQS---NANCPLCRT 174 (337)
Q Consensus 129 ~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CPlCR~ 174 (337)
-.|.||++..... ..-..|++|.|.|+..||..|... ..+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 4799999997653 244467799999999999999754 233555543
No 68
>PHA02862 5L protein; Provisional
Probab=95.33 E-value=0.012 Score=50.81 Aligned_cols=47 Identities=30% Similarity=0.745 Sum_probs=34.6
Q ss_pred CcccccccccccCceeEecCCCC-----ccccHHhHHHHHhc--CCCCCcccccCCCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCG-----HVFHIDCIDVWLQS--NANCPLCRTSISSTT 180 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~Ci~~Wl~~--~~~CPlCR~~l~~~~ 180 (337)
..|-||+++-.+. .-| |. ...|..|+.+|+.. +..|++|+.......
T Consensus 3 diCWIC~~~~~e~----~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~ 56 (156)
T PHA02862 3 DICWICNDVCDER----NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKK 56 (156)
T ss_pred CEEEEecCcCCCC----ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEE
Confidence 5799999984332 245 54 46999999999965 456999998775544
No 69
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.22 E-value=0.011 Score=41.90 Aligned_cols=45 Identities=29% Similarity=0.705 Sum_probs=22.1
Q ss_pred ccccccccccCceeEecC-CCCccccHHhHHHHHh-cCCCCCcccccC
Q 042750 131 CAVCLNEFQENEKLRIIP-NCGHVFHIDCIDVWLQ-SNANCPLCRTSI 176 (337)
Q Consensus 131 C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl~-~~~~CPlCR~~l 176 (337)
|++|.+++...+ ....| .|++.++..|...-+. .+..||-||.+.
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999984433 23344 4899999999888776 467799999763
No 70
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.22 E-value=0.009 Score=54.21 Aligned_cols=46 Identities=22% Similarity=0.561 Sum_probs=38.1
Q ss_pred CCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccC
Q 042750 127 SFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSI 176 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l 176 (337)
-...|.||-++|... ++. .|||.||..|...-++....|-+|.+..
T Consensus 195 IPF~C~iCKkdy~sp---vvt-~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 195 IPFLCGICKKDYESP---VVT-ECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred Cceeehhchhhccch---hhh-hcchhHHHHHHHHHhccCCcceecchhh
Confidence 346899999999874 344 4999999999999888889999997654
No 71
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.014 Score=57.25 Aligned_cols=45 Identities=36% Similarity=0.724 Sum_probs=33.0
Q ss_pred CCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 127 SFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
....|.||+++..+ ...+| |||.-+ |..--.. ...||+||..+..
T Consensus 304 ~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs~~-l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCSKH-LPQCPVCRQRIRL 348 (355)
T ss_pred CCCceEEecCCccc---eeeec-CCcEEE--chHHHhh-CCCCchhHHHHHH
Confidence 34679999999766 66778 999966 6555422 3459999988753
No 72
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.013 Score=58.45 Aligned_cols=47 Identities=26% Similarity=0.729 Sum_probs=38.1
Q ss_pred CCCcccccccccccCceeEecCCCCccccHHhHHHHHhc--------CCCCCcccc
Q 042750 127 SFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS--------NANCPLCRT 174 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--------~~~CPlCR~ 174 (337)
....|.||+++.........+| |+|+||..|+..++.. .-.||-|+-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 3478999999987778899999 9999999999999853 234877654
No 73
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.86 E-value=0.013 Score=62.90 Aligned_cols=51 Identities=29% Similarity=0.786 Sum_probs=38.1
Q ss_pred CCCCCcccccccccccCceeEecCCCCccccHHhHHHHHhc-------CCCCCccccc
Q 042750 125 ERSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS-------NANCPLCRTS 175 (337)
Q Consensus 125 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-------~~~CPlCR~~ 175 (337)
.....+|.||++.+.....+---..|-|+||..||..|-.. .-.||.|...
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 34457999999998776554433358899999999999754 1239999843
No 74
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.68 E-value=0.011 Score=54.98 Aligned_cols=63 Identities=22% Similarity=0.456 Sum_probs=41.4
Q ss_pred cccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCCCCCCCCCCCcccccCCC
Q 042750 130 ECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISSTTTTPTTFLPFDRIIAPS 196 (337)
Q Consensus 130 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~~~~~~~~~~~~~~~~~~ 196 (337)
.|..|..--. ++...++. |.|+||..|...-. ...||+|+..+.....+...+..+.....+.
T Consensus 5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~~--~~~C~lCkk~ir~i~l~~slp~~ik~~F~d~ 67 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKASS--PDVCPLCKKSIRIIQLNRSLPTDIKSYFADP 67 (233)
T ss_pred EeccccccCC-CCceeeee-chhhhhhhhcccCC--ccccccccceeeeeecccccchhHHHHccCc
Confidence 4787766544 66676665 99999999976532 3389999999766655444434444444333
No 75
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.56 E-value=0.032 Score=52.23 Aligned_cols=53 Identities=13% Similarity=0.360 Sum_probs=46.5
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISSTT 180 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~~ 180 (337)
...|+||.+.+.+.....+|..|||+|+.+|.++.+.....||+|-.++....
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 46899999999998888888789999999999999999999999987775443
No 76
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.54 E-value=0.035 Score=48.83 Aligned_cols=50 Identities=22% Similarity=0.636 Sum_probs=35.1
Q ss_pred CCCCcccccccccccCceeEecC-CCCc---cccHHhHHHHHhc--CCCCCcccccCCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIP-NCGH---VFHIDCIDVWLQS--NANCPLCRTSISST 179 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp-~C~H---~FH~~Ci~~Wl~~--~~~CPlCR~~l~~~ 179 (337)
..+..|-||.++-. .. ..| .|.. ..|..|+.+|+.. ...|++|+......
T Consensus 6 ~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 34578999998843 22 245 2444 5799999999965 45699998876444
No 77
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.01 E-value=0.032 Score=53.61 Aligned_cols=48 Identities=31% Similarity=0.700 Sum_probs=36.1
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHh-cCCCCCcccc-cCCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQ-SNANCPLCRT-SISST 179 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CPlCR~-~l~~~ 179 (337)
..|+.|-.-+...-+ +|.|+|.||.+||..-|. ....||.|.+ +|..+
T Consensus 275 LkCplc~~Llrnp~k---T~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld 324 (427)
T COG5222 275 LKCPLCHCLLRNPMK---TPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLD 324 (427)
T ss_pred ccCcchhhhhhCccc---CccccchHHHHHHhhhhhhccccCCCcccccchhh
Confidence 579999888766433 367999999999997764 5678999954 44433
No 78
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.93 E-value=0.064 Score=50.86 Aligned_cols=52 Identities=23% Similarity=0.515 Sum_probs=40.8
Q ss_pred CCCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCC
Q 042750 125 ERSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 125 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
....+.|+|+..+|........+..|||+|-..||.+.- ....||+|-.++.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccc
Confidence 355689999999996655666665699999999999973 3567999977764
No 79
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.72 E-value=0.051 Score=53.20 Aligned_cols=70 Identities=23% Similarity=0.423 Sum_probs=48.3
Q ss_pred CHHHHHhCCceeeccccccccCCCCCCcccccccccccCceeEecCCCCccccHHhHHH--HHhcCCCCCcccccCCCC
Q 042750 103 DEAVIRAIPIFQFKKKASRDFGERSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDV--WLQSNANCPLCRTSISST 179 (337)
Q Consensus 103 ~~~~i~~lP~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~--Wl~~~~~CPlCR~~l~~~ 179 (337)
.+..+..-|.+.....+ ....+..-|.||-+...- ..++| |+|..|--|--+ .|...+.||+||..+...
T Consensus 39 kKNnlsaEPnlttsSad---dtDEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 39 KKNNLSAEPNLTTSSAD---DTDEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred cccccccCCcccccccc---ccccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccccceE
Confidence 33444555665444443 334455679999988654 67888 999999999654 366788999999877543
No 80
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=0.04 Score=49.27 Aligned_cols=30 Identities=37% Similarity=1.020 Sum_probs=24.2
Q ss_pred CCCccccHHhHHHHHhc----C-------CCCCcccccCCC
Q 042750 149 NCGHVFHIDCIDVWLQS----N-------ANCPLCRTSISS 178 (337)
Q Consensus 149 ~C~H~FH~~Ci~~Wl~~----~-------~~CPlCR~~l~~ 178 (337)
+||.-||.-|+..||.. + ..||.|..++..
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 59999999999999964 1 239999887753
No 81
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=93.64 E-value=0.038 Score=38.15 Aligned_cols=41 Identities=22% Similarity=0.703 Sum_probs=23.6
Q ss_pred ccccccccccCceeEecCCCCccccHHhHHHHHhcCC--CCCcc
Q 042750 131 CAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNA--NCPLC 172 (337)
Q Consensus 131 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~--~CPlC 172 (337)
|.+|-+....|..-... .|+=.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67787777666544222 4888999999999998755 69988
No 82
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=93.04 E-value=0.048 Score=52.15 Aligned_cols=66 Identities=23% Similarity=0.572 Sum_probs=46.9
Q ss_pred CcccccccccccCc-eeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCCCCCCCCCCCcccccCCCCCC
Q 042750 129 CECAVCLNEFQENE-KLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISSTTTTPTTFLPFDRIIAPSSTP 199 (337)
Q Consensus 129 ~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~~~~~~~~~~~~~~~~~~~~p 199 (337)
.-|+||.+.+.... .+..++ |||..|..|+......+-+||+|.+ +... ...+.-++..+...++|
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~---~~~~~~~d~~l~~~~~p 225 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK-PGDM---SHYFRKLDKELAGSPMP 225 (276)
T ss_pred CCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc-hHHH---HHHHHHHHHHHhcCCCC
Confidence 34999999987665 444555 9999999999999888899999988 4322 22334455555555443
No 83
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.92 E-value=0.039 Score=52.91 Aligned_cols=45 Identities=24% Similarity=0.524 Sum_probs=37.5
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSI 176 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l 176 (337)
.+.|-||...|..+ ++. .|+|.||..|...=++....|++|.+.+
T Consensus 241 Pf~c~icr~~f~~p---Vvt-~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP---VVT-KCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred Cccccccccccccc---hhh-cCCceeehhhhccccccCCcceeccccc
Confidence 35699999999874 334 4999999999998888889999997665
No 84
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.90 E-value=0.0082 Score=59.34 Aligned_cols=52 Identities=25% Similarity=0.724 Sum_probs=43.5
Q ss_pred CCcccccccccccC-ceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCCC
Q 042750 128 FCECAVCLNEFQEN-EKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISSTT 180 (337)
Q Consensus 128 ~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~~ 180 (337)
...|+||.+.+... +++..+- |||.+|.+||.+||.....||.|++.+....
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKNG 248 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence 35799999998776 5565564 9999999999999999888999999886543
No 85
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.53 E-value=0.067 Score=38.91 Aligned_cols=45 Identities=27% Similarity=0.615 Sum_probs=32.0
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISST 179 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~ 179 (337)
..|..|... +.+-.++| |+|..+..|.+-| .-+.||.|.+++...
T Consensus 8 ~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCC
Confidence 346555444 44456777 9999999998775 345699999888553
No 86
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=0.026 Score=53.99 Aligned_cols=42 Identities=29% Similarity=0.729 Sum_probs=31.7
Q ss_pred CCcccccccccccCceeEecCCCCcc-ccHHhHHHHHhcCCCCCcccccCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHV-FHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
..-|+||++.-.+ ...|+ |||. -|..|-... +.||+||+-|.
T Consensus 300 ~~LC~ICmDaP~D---CvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLE-CGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcc---eEEee-cCcEEeehhhcccc----ccCchHHHHHH
Confidence 4679999998443 66787 9997 677785553 37999998663
No 87
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=0.095 Score=50.14 Aligned_cols=48 Identities=29% Similarity=0.845 Sum_probs=38.2
Q ss_pred CCcccccccccccCc---eeEecCCCCccccHHhHHHHHhc-CCCCCcccccC
Q 042750 128 FCECAVCLNEFQENE---KLRIIPNCGHVFHIDCIDVWLQS-NANCPLCRTSI 176 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~---~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CPlCR~~l 176 (337)
...|-||-++|...+ ..+++ +|||.|+..|+..-+.. ...||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCccc-ccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 357999999998764 34455 49999999999887755 34599999986
No 88
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=0.065 Score=51.78 Aligned_cols=43 Identities=35% Similarity=0.730 Sum_probs=30.4
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSI 176 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l 176 (337)
-.|.-|--. ..-.-|++| |+|+||.+|-.. ...+.||.|-..|
T Consensus 91 HfCd~Cd~P--I~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFP--IAIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred EeecccCCc--ceeeecccc-cchhhhhhhhhc--CccccCcCcccHH
Confidence 357777433 333456788 999999999765 4467899996554
No 89
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.61 E-value=0.089 Score=56.75 Aligned_cols=41 Identities=24% Similarity=0.786 Sum_probs=31.1
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCccccc
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTS 175 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~ 175 (337)
..|..|-..+.-+ .... .|||.||.+|+. .....||-|+..
T Consensus 841 skCs~C~~~LdlP--~VhF-~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHF-LCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeecccCCccccc--eeee-ecccHHHHHhhc---cCcccCCccchh
Confidence 5799998877554 3333 399999999998 445679999763
No 90
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.40 E-value=0.062 Score=56.32 Aligned_cols=44 Identities=30% Similarity=0.683 Sum_probs=34.5
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCccccc
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTS 175 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~ 175 (337)
..|.||+..|......-+.+.|||..|..|+..-+ +.+|| |+.+
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~D 55 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKRD 55 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCcc
Confidence 57999999988776555555799999999998854 57899 6543
No 91
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.30 E-value=0.11 Score=55.49 Aligned_cols=23 Identities=39% Similarity=1.041 Sum_probs=21.3
Q ss_pred CCCccccHHhHHHHHhcCCCCCc
Q 042750 149 NCGHVFHIDCIDVWLQSNANCPL 171 (337)
Q Consensus 149 ~C~H~FH~~Ci~~Wl~~~~~CPl 171 (337)
.|+|+.|..|..+|+.....||-
T Consensus 1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cccccccHHHHHHHHhcCCcCCC
Confidence 49999999999999999999984
No 92
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=89.94 E-value=0.23 Score=48.70 Aligned_cols=55 Identities=25% Similarity=0.487 Sum_probs=37.3
Q ss_pred CCCCCcccccccccccCcee-EecCCCCccccHHhHHHHHh-cCCCCCcccccCCCCC
Q 042750 125 ERSFCECAVCLNEFQENEKL-RIIPNCGHVFHIDCIDVWLQ-SNANCPLCRTSISSTT 180 (337)
Q Consensus 125 ~~~~~~C~ICl~~~~~~~~~-~~lp~C~H~FH~~Ci~~Wl~-~~~~CPlCR~~l~~~~ 180 (337)
+.+++-|+.|+|++...++- .-.| ||...|.-|....-+ .+..||-||+......
T Consensus 11 edeed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 34456699999999876643 2334 898877777444322 2667999998876544
No 93
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=89.76 E-value=0.13 Score=55.02 Aligned_cols=46 Identities=35% Similarity=0.847 Sum_probs=35.4
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhc--CCCCCcccccCCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS--NANCPLCRTSISST 179 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CPlCR~~l~~~ 179 (337)
..|.||++ .+...+.+ |+|.||..|+..-+.. ..-||+||..+...
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 68999999 33455566 9999999999888755 23499999877544
No 94
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.54 E-value=0.21 Score=54.17 Aligned_cols=35 Identities=29% Similarity=0.663 Sum_probs=27.8
Q ss_pred CCCcccccccccccCceeEecCCCCccccHHhHHHHH
Q 042750 127 SFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWL 163 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl 163 (337)
....|.+|.-.+... .-.+.| |||.||.+||.+-.
T Consensus 816 p~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 357899999888665 455667 99999999998764
No 95
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=88.35 E-value=0.57 Score=34.04 Aligned_cols=33 Identities=33% Similarity=1.036 Sum_probs=29.2
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHH
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDV 161 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~ 161 (337)
.-|.+|-+.|..++.+.+-|.|+-.+|.+|-+.
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 569999999998888999999999999999443
No 96
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=87.96 E-value=0.17 Score=56.94 Aligned_cols=48 Identities=25% Similarity=0.798 Sum_probs=39.1
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
...|.||++.+.....+. .|||.++..|+..|+..+..||.|+.....
T Consensus 1153 ~~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi~~d 1200 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSIKGD 1200 (1394)
T ss_pred ccchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhhhhh
Confidence 458999999988543332 499999999999999999999999855443
No 97
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=86.52 E-value=0.73 Score=36.79 Aligned_cols=37 Identities=14% Similarity=0.076 Sum_probs=24.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042750 30 SSHNSDTSFPVIAIAIVGILATGFLLVSYYIFVIKCC 66 (337)
Q Consensus 30 ~~~sS~~~f~ilviiii~il~~~~lLi~~~~~~~~cc 66 (337)
..++|+..|..++.++|.+++.+.++.+.|.+++|=|
T Consensus 26 ~p~ss~~~ws~vv~v~i~~lvaVg~~YL~y~~fLkDl 62 (91)
T PF01708_consen 26 APSSSGLPWSRVVEVAIFTLVAVGCLYLAYTWFLKDL 62 (91)
T ss_pred CCCCCCCcceeEeeeeehHHHHHHHHHHHHHHHHHHH
Confidence 3466778888877777777666666666666655533
No 98
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.51 E-value=0.43 Score=43.90 Aligned_cols=39 Identities=26% Similarity=0.722 Sum_probs=29.3
Q ss_pred ccccccccccCceeEecCCCCcc-ccHHhHHHHHhcCCCCCcccccCC
Q 042750 131 CAVCLNEFQENEKLRIIPNCGHV-FHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 131 C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
|-.|-+. +..+..+| |.|. +|..|=.. -.+||+|+....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence 8888766 45588899 9987 88889543 356999987664
No 99
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=86.20 E-value=0.64 Score=50.24 Aligned_cols=54 Identities=20% Similarity=0.580 Sum_probs=39.2
Q ss_pred CCCcccccccccccCceeEecCCCCc-----cccHHhHHHHHhc--CCCCCcccccCCCCCCC
Q 042750 127 SFCECAVCLNEFQENEKLRIIPNCGH-----VFHIDCIDVWLQS--NANCPLCRTSISSTTTT 182 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~C~H-----~FH~~Ci~~Wl~~--~~~CPlCR~~l~~~~~~ 182 (337)
++..|-||..+=..++.+ .-| |.. ..|.+|+.+|+.- ...|-+|+.++...+.+
T Consensus 11 d~~~CRICr~e~~~d~pL-fhP-CKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY 71 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPL-FHP-CKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIY 71 (1175)
T ss_pred cchhceeecCCCCCCCcC-ccc-ccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeec
Confidence 347899999886665544 345 543 4899999999975 34599999888766543
No 100
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=84.33 E-value=0.82 Score=45.47 Aligned_cols=27 Identities=30% Similarity=1.054 Sum_probs=20.0
Q ss_pred CCccccHHhHHHHHhc-------------CCCCCcccccC
Q 042750 150 CGHVFHIDCIDVWLQS-------------NANCPLCRTSI 176 (337)
Q Consensus 150 C~H~FH~~Ci~~Wl~~-------------~~~CPlCR~~l 176 (337)
|.-.+|.+|+-+|+.. +-.||.||+..
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 3345789999999743 34599999864
No 101
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=82.23 E-value=0.8 Score=43.64 Aligned_cols=51 Identities=27% Similarity=0.698 Sum_probs=36.6
Q ss_pred CCcccccccccccCce-eEecCCCC-----ccccHHhHHHHHh--cCCCCCcccccCCCC
Q 042750 128 FCECAVCLNEFQENEK-LRIIPNCG-----HVFHIDCIDVWLQ--SNANCPLCRTSISST 179 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~-~~~lp~C~-----H~FH~~Ci~~Wl~--~~~~CPlCR~~l~~~ 179 (337)
...|-||.++...... ....| |. +..|..|++.|+. ....|.+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4679999998654432 34455 64 4589999999997 456699998766443
No 102
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=81.79 E-value=1.8 Score=38.15 Aligned_cols=33 Identities=18% Similarity=0.586 Sum_probs=21.1
Q ss_pred CCcccccccccccCceeEecC------C-----CCc-cccHHhHHHHH
Q 042750 128 FCECAVCLNEFQENEKLRIIP------N-----CGH-VFHIDCIDVWL 163 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp------~-----C~H-~FH~~Ci~~Wl 163 (337)
+..|+||||--.+. .+|- + |+- .=|..|++++-
T Consensus 2 d~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 2 DVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred CccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHH
Confidence 45799999985543 2222 1 332 35788999985
No 103
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=81.59 E-value=1.2 Score=42.74 Aligned_cols=51 Identities=27% Similarity=0.658 Sum_probs=36.6
Q ss_pred cccccccc-cccCc-eeEecCCCCccccHHhHHHHHhcC-CCCCcccccCCCCCC
Q 042750 130 ECAVCLNE-FQENE-KLRIIPNCGHVFHIDCIDVWLQSN-ANCPLCRTSISSTTT 181 (337)
Q Consensus 130 ~C~ICl~~-~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CPlCR~~l~~~~~ 181 (337)
.|++|-.+ |...+ .+.+-+ |+|..|..|++..+..+ ..||.|-..+.....
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~-C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINE-CGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeecc-ccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 48889766 44444 333334 99999999999988664 459999777765543
No 104
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=81.11 E-value=0.7 Score=43.36 Aligned_cols=51 Identities=27% Similarity=0.590 Sum_probs=37.6
Q ss_pred CCCccccccccc-ccCc-eeEecCCCCccccHHhHHHHHhcC-CCCC--cccccCC
Q 042750 127 SFCECAVCLNEF-QENE-KLRIIPNCGHVFHIDCIDVWLQSN-ANCP--LCRTSIS 177 (337)
Q Consensus 127 ~~~~C~ICl~~~-~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CP--lCR~~l~ 177 (337)
.+..|+||..+- -.++ ++.+-|.|-|..|..|+++-+... .-|| -|-+-+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 345799999873 3333 555666799999999999998764 4599 8855443
No 105
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=79.62 E-value=1.5 Score=47.09 Aligned_cols=40 Identities=23% Similarity=0.423 Sum_probs=30.7
Q ss_pred cccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCc
Q 042750 130 ECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPL 171 (337)
Q Consensus 130 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPl 171 (337)
.|.+|-..+.. .....+.|+|.-|.+|+..|+..+.-||.
T Consensus 781 ~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred Cceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 68888665433 23344579999999999999999888877
No 106
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=79.22 E-value=3.7 Score=27.66 Aligned_cols=9 Identities=33% Similarity=0.929 Sum_probs=4.2
Q ss_pred HHHHHhhcc
Q 042750 61 FVIKCCLNW 69 (337)
Q Consensus 61 ~~~~cc~~~ 69 (337)
++.-||+++
T Consensus 24 ~~YaCcykk 32 (38)
T PF02439_consen 24 FYYACCYKK 32 (38)
T ss_pred HHHHHHHcc
Confidence 333455554
No 107
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=78.71 E-value=1.6 Score=37.43 Aligned_cols=52 Identities=29% Similarity=0.639 Sum_probs=35.2
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHH-HHHh--cCCCCCcccccCCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCID-VWLQ--SNANCPLCRTSISST 179 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~-~Wl~--~~~~CPlCR~~l~~~ 179 (337)
-.+|.||.|.-.+..-+.---.||-..|..|-. -|-. .+..||+|++.....
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 478999999865543222112589888888754 5542 367799999887543
No 108
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.93 E-value=7.2 Score=39.15 Aligned_cols=46 Identities=24% Similarity=0.588 Sum_probs=38.6
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCC---CCCcc
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNA---NCPLC 172 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~---~CPlC 172 (337)
.+...|+|--+.-.+.+....|. |||+...+-|++..++.. .||-|
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred cceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCC
Confidence 34578999988888878888887 999999999999877644 59999
No 109
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.81 E-value=1.3 Score=46.33 Aligned_cols=48 Identities=35% Similarity=0.815 Sum_probs=38.9
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISSTTT 181 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~~~ 181 (337)
.....|.||+.+. ..++.+ |. |..|+.+|+..+..||+|+..+.....
T Consensus 477 ~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 477 EPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDF 524 (543)
T ss_pred cccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhcccc
Confidence 3457899999998 355555 88 999999999999999999988766543
No 110
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=76.94 E-value=0.72 Score=49.22 Aligned_cols=47 Identities=30% Similarity=0.856 Sum_probs=35.9
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcC---CCCCcccccCCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSN---ANCPLCRTSISST 179 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~---~~CPlCR~~l~~~ 179 (337)
.+|+||...+... ..+ +|.|.|+..|+..-+... ..||+|+..+...
T Consensus 22 lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 22 LECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred ccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 6899999998876 223 599999999988766543 4599999666543
No 111
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.83 E-value=1.2 Score=42.26 Aligned_cols=50 Identities=24% Similarity=0.660 Sum_probs=33.6
Q ss_pred CCCCcccccccccccCcee-EecCCC-----CccccHHhHHHHHhc--------CCCCCcccccC
Q 042750 126 RSFCECAVCLNEFQENEKL-RIIPNC-----GHVFHIDCIDVWLQS--------NANCPLCRTSI 176 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~-~~lp~C-----~H~FH~~Ci~~Wl~~--------~~~CPlCR~~l 176 (337)
..+..|-||+..=++...- -+-| | .|-.|..|+..|+.. ..+||.|++..
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 3456899999874433211 2345 5 477999999999843 23499998764
No 112
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.90 E-value=1.3 Score=44.49 Aligned_cols=37 Identities=30% Similarity=0.742 Sum_probs=27.2
Q ss_pred CCcccccccccccC-ceeEecCCCCccccHHhHHHHHhc
Q 042750 128 FCECAVCLNEFQEN-EKLRIIPNCGHVFHIDCIDVWLQS 165 (337)
Q Consensus 128 ~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci~~Wl~~ 165 (337)
..+|.||+.+.... ....+. .|+|.||.+|+.+.+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhh
Confidence 46899999444433 444434 59999999999988764
No 113
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=74.93 E-value=1.7 Score=46.97 Aligned_cols=53 Identities=11% Similarity=0.177 Sum_probs=37.2
Q ss_pred CCcccccccccccCc---eeEecCCCCccccHHhHHHHHhc------CCCCCcccccCCCCC
Q 042750 128 FCECAVCLNEFQENE---KLRIIPNCGHVFHIDCIDVWLQS------NANCPLCRTSISSTT 180 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~---~~~~lp~C~H~FH~~Ci~~Wl~~------~~~CPlCR~~l~~~~ 180 (337)
...|.||.-++..++ .+..+.+|+|-||..||..|+.+ +-.|+.|..-|....
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs 157 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWS 157 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhh
Confidence 357888888877622 23233369999999999999854 334899987765543
No 114
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=72.46 E-value=1.4 Score=31.26 Aligned_cols=43 Identities=21% Similarity=0.751 Sum_probs=24.7
Q ss_pred cccccccccccCceeEecCCC-CccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 130 ECAVCLNEFQENEKLRIIPNC-GHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 130 ~C~ICl~~~~~~~~~~~lp~C-~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
-|.-|+-+. ...+ .| .|..+..|+...|.....||+|..++..
T Consensus 4 nCKsCWf~~--k~Li----~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFAN--KGLI----KCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S----SSEE----E-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred cChhhhhcC--CCee----eecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 355665442 2223 37 5999999999999999999999988753
No 115
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=72.08 E-value=5.7 Score=33.62 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042750 40 VIAIAIVGILATGFLLVSYYI 60 (337)
Q Consensus 40 ilviiii~il~~~~lLi~~~~ 60 (337)
.++.|++|+++.++++++++.
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~ 85 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLIS 85 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHH
Confidence 445567777776666554433
No 116
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=71.16 E-value=3.1 Score=40.41 Aligned_cols=44 Identities=30% Similarity=0.764 Sum_probs=33.4
Q ss_pred CCCCcccccccccccCceeEecCCC--CccccHHhHHHHHhcCCCCCcccccCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNC--GHVFHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C--~H~FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
..-.+|+||.+.+... +. +| ||..|..|-.+ ....||.||.++.
T Consensus 46 ~~lleCPvC~~~l~~P--i~---QC~nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP--IF---QCDNGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCccc--ce---ecCCCcEehhhhhhh---hcccCCccccccc
Confidence 3447899999998764 22 36 79999999653 4567999999886
No 117
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=69.62 E-value=13 Score=31.23 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 042750 45 IVGILATGFLLVSYYIFVIKCCLNWH 70 (337)
Q Consensus 45 ii~il~~~~lLi~~~~~~~~cc~~~~ 70 (337)
|-|+.++.+..+....++.+||++|-
T Consensus 90 IGGLcaL~LaamGA~~LLrR~cRr~a 115 (126)
T PF03229_consen 90 IGGLCALTLAAMGAGALLRRCCRRAA 115 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555666667788887763
No 118
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.58 E-value=5.9 Score=37.60 Aligned_cols=51 Identities=20% Similarity=0.382 Sum_probs=39.1
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
...+.|+|---+|........+..|||+|-..-+.+. ...+|++|.+....
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQE 159 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccc
Confidence 3457899998888776666666679999998887774 35789999877643
No 119
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.30 E-value=3.1 Score=40.17 Aligned_cols=27 Identities=26% Similarity=0.775 Sum_probs=20.9
Q ss_pred CCccccHHhHHHHHh-------------cCCCCCcccccC
Q 042750 150 CGHVFHIDCIDVWLQ-------------SNANCPLCRTSI 176 (337)
Q Consensus 150 C~H~FH~~Ci~~Wl~-------------~~~~CPlCR~~l 176 (337)
|.-.+|.+|+.+|+. +.-+||+||+..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 456789999999973 345699999865
No 120
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=67.02 E-value=2.3 Score=44.89 Aligned_cols=42 Identities=29% Similarity=0.708 Sum_probs=26.8
Q ss_pred CCcccccccc-----cccCceeEecCCCCccccHHhHHHHHhcCCCCCccc
Q 042750 128 FCECAVCLNE-----FQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCR 173 (337)
Q Consensus 128 ~~~C~ICl~~-----~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR 173 (337)
...|.+|... |. .+.++..-.|+++||..|+.. ....||.|-
T Consensus 511 gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred eeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence 4678898332 22 223333335999999999554 444599993
No 121
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.51 E-value=7.5 Score=39.66 Aligned_cols=52 Identities=21% Similarity=0.610 Sum_probs=36.3
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcC--------CCC--CcccccCCCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSN--------ANC--PLCRTSISSTT 180 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--------~~C--PlCR~~l~~~~ 180 (337)
....+|-||.+.+.. .+..+. |+|.|+..|....+..+ .+| +-|+..+....
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~ 129 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDT 129 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCce
Confidence 345789999999866 344454 99999999999988541 245 45666555443
No 122
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=65.46 E-value=5 Score=36.62 Aligned_cols=39 Identities=33% Similarity=0.841 Sum_probs=28.7
Q ss_pred Ccccccccc-----cccCceeEecCCCCccccHHhHHHHHhcCCCCCccc
Q 042750 129 CECAVCLNE-----FQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCR 173 (337)
Q Consensus 129 ~~C~ICl~~-----~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR 173 (337)
..|.+|-++ |+. +.+..-+.|+-+||..|... ..||-|.
T Consensus 153 fiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred CCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 689999753 222 34556668999999999662 6799994
No 123
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=65.42 E-value=3.2 Score=38.36 Aligned_cols=45 Identities=27% Similarity=0.624 Sum_probs=35.1
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSI 176 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l 176 (337)
..|.+|.+-.-.+ ++-- .|+-.+|..|+...+++...||.|..-+
T Consensus 182 k~Cn~Ch~LvIqg--~rCg-~c~i~~h~~c~qty~q~~~~cphc~d~w 226 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG--IRCG-SCNIQYHRGCIQTYLQRRDICPHCGDLW 226 (235)
T ss_pred HHHhHhHHHhhee--eccC-cccchhhhHHHHHHhcccCcCCchhccc
Confidence 5799998876554 2222 4888899999999999999999995433
No 124
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=63.95 E-value=13 Score=30.33 Aligned_cols=31 Identities=19% Similarity=0.448 Sum_probs=17.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042750 32 HNSDTSFPVIAIAIVGILATGFLLVSYYIFVIKCC 66 (337)
Q Consensus 32 ~sS~~~f~ilviiii~il~~~~lLi~~~~~~~~cc 66 (337)
.....+|+.++ |++++++++-+++++.+||-
T Consensus 11 ~~~g~sW~~LV----GVv~~al~~SlLIalaaKC~ 41 (102)
T PF15176_consen 11 GEGGRSWPFLV----GVVVTALVTSLLIALAAKCP 41 (102)
T ss_pred CCCCcccHhHH----HHHHHHHHHHHHHHHHHHhH
Confidence 34466677554 55555555555555666664
No 125
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=62.45 E-value=4.1 Score=38.86 Aligned_cols=48 Identities=29% Similarity=0.703 Sum_probs=34.3
Q ss_pred CcccccccccccCceeEec---CCCCccccHHhHHHHHhc---------CCCCCcccccC
Q 042750 129 CECAVCLNEFQENEKLRII---PNCGHVFHIDCIDVWLQS---------NANCPLCRTSI 176 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~l---p~C~H~FH~~Ci~~Wl~~---------~~~CPlCR~~l 176 (337)
.+|.+|.+++.+.+..+.. +.|+-.+|..|+..-+.. ...||.|++.+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 5899999999555544322 257888999999984422 34599998854
No 126
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=60.87 E-value=8.4 Score=27.26 Aligned_cols=43 Identities=23% Similarity=0.634 Sum_probs=18.9
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhc---C--CCCCccccc
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS---N--ANCPLCRTS 175 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~---~--~~CPlCR~~ 175 (337)
..|+|....+.. .++... |.|.-+.+ ++.||.. . -.||+|.++
T Consensus 3 L~CPls~~~i~~--P~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRI--PVRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SS--EEEETT---SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEe--CccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 358888877655 355554 99984322 3455543 2 249999753
No 127
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=59.39 E-value=9.7 Score=24.06 Aligned_cols=36 Identities=28% Similarity=0.652 Sum_probs=24.8
Q ss_pred ccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccC
Q 042750 131 CAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSI 176 (337)
Q Consensus 131 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l 176 (337)
|..|-+.+...+..... =+..||.+| ..|..|...|
T Consensus 2 C~~C~~~i~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRA--LGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEe--CCccccccC--------CCCcccCCcC
Confidence 78888887665333222 478899888 5688887765
No 128
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=57.34 E-value=12 Score=36.62 Aligned_cols=55 Identities=27% Similarity=0.576 Sum_probs=35.8
Q ss_pred CCCCCCcccccccccc---------------cCc-eeEecCCCCccccHHhHHHHHhc---------CCCCCcccccCCC
Q 042750 124 GERSFCECAVCLNEFQ---------------ENE-KLRIIPNCGHVFHIDCIDVWLQS---------NANCPLCRTSISS 178 (337)
Q Consensus 124 ~~~~~~~C~ICl~~~~---------------~~~-~~~~lp~C~H~FH~~Ci~~Wl~~---------~~~CPlCR~~l~~ 178 (337)
....+.+|++|+..=. .+- .....| |||+--..-..-|-+. +..||.|-..+..
T Consensus 337 ~g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 337 TGQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCcccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 3344678999987621 011 122345 9999888888889753 4559999777654
Q ss_pred C
Q 042750 179 T 179 (337)
Q Consensus 179 ~ 179 (337)
.
T Consensus 416 e 416 (429)
T KOG3842|consen 416 E 416 (429)
T ss_pred C
Confidence 3
No 129
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=56.30 E-value=5.4 Score=40.60 Aligned_cols=32 Identities=31% Similarity=0.621 Sum_probs=25.8
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHH
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWL 163 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl 163 (337)
+..|+||..-|.+ .++|| |+|..|..|-..-+
T Consensus 4 elkc~vc~~f~~e---piil~-c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 4 ELKCPVCGSFYRE---PIILP-CSHNLCQACARNIL 35 (699)
T ss_pred cccCceehhhccC---ceEee-cccHHHHHHHHhhc
Confidence 4679999999877 56788 99999999977543
No 130
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=55.78 E-value=8.4 Score=30.48 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042750 38 FPVIAIAIVGILATGFLLVSYYIFVIKCCLNW 69 (337)
Q Consensus 38 f~ilviiii~il~~~~lLi~~~~~~~~cc~~~ 69 (337)
.+.+++.+|+..+..++|+.+.+.+..||.++
T Consensus 12 lp~~~yyiiA~gga~llL~~v~l~vvL~C~r~ 43 (87)
T PF11980_consen 12 LPPYWYYIIAMGGALLLLVAVCLGVVLYCHRF 43 (87)
T ss_pred CCceeeHHHhhccHHHHHHHHHHHHHHhhhhh
Confidence 56667777777777777766665556666554
No 131
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.22 E-value=4.6 Score=43.79 Aligned_cols=44 Identities=23% Similarity=0.597 Sum_probs=32.1
Q ss_pred CCcccccccccccC----ceeEecCCCCccccHHhHHHHHhcCCCCCccc
Q 042750 128 FCECAVCLNEFQEN----EKLRIIPNCGHVFHIDCIDVWLQSNANCPLCR 173 (337)
Q Consensus 128 ~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR 173 (337)
+..|.-|.+..... +.+.++- |+|.||..|+..-..+++ |-.|.
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChhh
Confidence 45799999886532 3466664 999999999987766655 66663
No 133
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=54.58 E-value=6.7 Score=24.14 Aligned_cols=23 Identities=35% Similarity=0.794 Sum_probs=12.3
Q ss_pred cccccccccccCceeEecCCCCccc
Q 042750 130 ECAVCLNEFQENEKLRIIPNCGHVF 154 (337)
Q Consensus 130 ~C~ICl~~~~~~~~~~~lp~C~H~F 154 (337)
.|+-|-..+... ...-|.|||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 466666665333 23334566665
No 134
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=54.28 E-value=15 Score=29.35 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=6.6
Q ss_pred HHHHHHHHhhcc
Q 042750 58 YYIFVIKCCLNW 69 (337)
Q Consensus 58 ~~~~~~~cc~~~ 69 (337)
+.+++..||+.+
T Consensus 47 ~VilwfvCC~kR 58 (94)
T PF05393_consen 47 LVILWFVCCKKR 58 (94)
T ss_pred HHHHHHHHHHHh
Confidence 334455677664
No 135
>PLN02400 cellulose synthase
Probab=54.07 E-value=13 Score=42.08 Aligned_cols=49 Identities=16% Similarity=0.453 Sum_probs=33.2
Q ss_pred Ccccccccccc---cCceeEecCCCCccccHHhHH-HHHhcCCCCCcccccCC
Q 042750 129 CECAVCLNEFQ---ENEKLRIIPNCGHVFHIDCID-VWLQSNANCPLCRTSIS 177 (337)
Q Consensus 129 ~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~Ci~-~Wl~~~~~CPlCR~~l~ 177 (337)
..|.||-++.. +|+.-...-.|+--.|..|.+ +.-..++.||.||+...
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 57999999864 333333233466679999985 22344788999998764
No 136
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=53.53 E-value=11 Score=26.45 Aligned_cols=39 Identities=23% Similarity=0.567 Sum_probs=27.5
Q ss_pred ccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCC
Q 042750 131 CAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISST 179 (337)
Q Consensus 131 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~ 179 (337)
|+.|-..+..++.+... -+..||..| .+|-.|+..|...
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEccc--------cccCCCCCccCCC
Confidence 67788887765544222 678899887 6788998887544
No 137
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=51.40 E-value=5.9 Score=32.23 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=8.7
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q 042750 37 SFPVIAIAIVGILATGFLL 55 (337)
Q Consensus 37 ~f~ilviiii~il~~~~lL 55 (337)
.+.++++++++++++++++
T Consensus 60 ~~~iili~lls~v~IlVil 78 (101)
T PF06024_consen 60 NGNIILISLLSFVCILVIL 78 (101)
T ss_pred cccchHHHHHHHHHHHHHH
Confidence 3445555444444444333
No 138
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=49.41 E-value=13 Score=26.69 Aligned_cols=42 Identities=36% Similarity=0.839 Sum_probs=20.6
Q ss_pred ccccccccccCc------eeEecCCCCccccHHhHHHHHh-cCCCCCccc
Q 042750 131 CAVCLNEFQENE------KLRIIPNCGHVFHIDCIDVWLQ-SNANCPLCR 173 (337)
Q Consensus 131 C~ICl~~~~~~~------~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CPlCR 173 (337)
|--|+..|.... ..-.-|.|++.|+.+| |.++. .=-+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 555666665542 3445568999999999 33322 234599883
No 139
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=48.86 E-value=31 Score=26.55 Aligned_cols=6 Identities=17% Similarity=0.562 Sum_probs=2.2
Q ss_pred hhHHHH
Q 042750 38 FPVIAI 43 (337)
Q Consensus 38 f~ilvi 43 (337)
|.++++
T Consensus 48 ~~~~ii 53 (72)
T PF12575_consen 48 WIILII 53 (72)
T ss_pred HHHHHH
Confidence 333333
No 140
>PLN02189 cellulose synthase
Probab=48.85 E-value=17 Score=41.00 Aligned_cols=49 Identities=22% Similarity=0.561 Sum_probs=34.6
Q ss_pred Ccccccccccc---cCceeEecCCCCccccHHhHHHH-HhcCCCCCcccccCC
Q 042750 129 CECAVCLNEFQ---ENEKLRIIPNCGHVFHIDCIDVW-LQSNANCPLCRTSIS 177 (337)
Q Consensus 129 ~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~Ci~~W-l~~~~~CPlCR~~l~ 177 (337)
..|.||-+++. +|+.-.....|+--.|..|.+-= -..++.||.|++...
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 57999999975 34444444457778999998532 234778999998765
No 141
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=47.84 E-value=17 Score=37.48 Aligned_cols=72 Identities=15% Similarity=0.387 Sum_probs=40.9
Q ss_pred Cceeecccccc-ccCCCCCCccccccccc-ccCceeEecCCCCccccHHhHHHHH----hc----CCCCCcccccCCCCC
Q 042750 111 PIFQFKKKASR-DFGERSFCECAVCLNEF-QENEKLRIIPNCGHVFHIDCIDVWL----QS----NANCPLCRTSISSTT 180 (337)
Q Consensus 111 P~~~~~~~~~~-~~~~~~~~~C~ICl~~~-~~~~~~~~lp~C~H~FH~~Ci~~Wl----~~----~~~CPlCR~~l~~~~ 180 (337)
|++.|...... +.....+.+|.+|+.-. -....+...-.|+-.||..|-.... .. .-.|=+|........
T Consensus 150 ~~l~y~~~~l~wD~~~~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~ 229 (464)
T KOG4323|consen 150 PSLPYPEASLDWDSGHKVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVP 229 (464)
T ss_pred ccccCcccccccCccccccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhcc
Confidence 44455433311 33444456799999543 3334444444678889999965442 22 123999976655544
Q ss_pred CC
Q 042750 181 TT 182 (337)
Q Consensus 181 ~~ 182 (337)
..
T Consensus 230 r~ 231 (464)
T KOG4323|consen 230 RL 231 (464)
T ss_pred cc
Confidence 33
No 142
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.64 E-value=13 Score=36.23 Aligned_cols=51 Identities=24% Similarity=0.555 Sum_probs=41.0
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISST 179 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~ 179 (337)
..+..|-||...+...... .+|.|.|+..|...|....+.||.|+......
T Consensus 103 ~~~~~~~~~~g~l~vpt~~---qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv 153 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRI---QGCWHQFCYVCPKSNFAMGNDCPDCRGKISPV 153 (324)
T ss_pred CCccceeeeeeeEEecccc---cCceeeeeecCCchhhhhhhccchhhcCcCce
Confidence 4457899999887665433 25999999999999999999999998876554
No 143
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=47.46 E-value=25 Score=25.80 Aligned_cols=45 Identities=27% Similarity=0.685 Sum_probs=31.9
Q ss_pred cccccccccccCceeEecCCCC--ccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 130 ECAVCLNEFQENEKLRIIPNCG--HVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 130 ~C~ICl~~~~~~~~~~~lp~C~--H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
.|-.|-.++..+..-..+ |. ..|+.+|.+..| +..||.|-..+..
T Consensus 7 nCE~C~~dLp~~s~~A~I--CSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYI--CSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceE--EeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 477787777665522222 65 469999999977 5789999777643
No 144
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=45.04 E-value=12 Score=25.77 Aligned_cols=42 Identities=24% Similarity=0.628 Sum_probs=27.1
Q ss_pred ccccccccccCceeEecCCCCccccHHhHHHHHh------cCCCCCccc
Q 042750 131 CAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQ------SNANCPLCR 173 (337)
Q Consensus 131 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~------~~~~CPlCR 173 (337)
|.||...-..+ .+..--.|+-.||..|+..=.. ..-.||.|+
T Consensus 2 C~vC~~~~~~~-~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSDDDG-DMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp BTTTTSSCTTS-SEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred CcCCCCcCCCC-CeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 88998844333 3444446999999999764332 133487775
No 145
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=44.98 E-value=12 Score=34.62 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=13.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042750 37 SFPVIAIAIVGILATGFLLVSYYIFVIKCCL 67 (337)
Q Consensus 37 ~f~ilviiii~il~~~~lLi~~~~~~~~cc~ 67 (337)
++..++|.+|+-.++++|+|++. .+++||+
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~-v~vR~CR 64 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIV-VLVRYCR 64 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHH-HHHHHHh
Confidence 34444444444434444433333 3446554
No 146
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.93 E-value=26 Score=29.25 Aligned_cols=45 Identities=27% Similarity=0.474 Sum_probs=32.0
Q ss_pred CcccccccccccCc----------eeEecCCCCccccHHhHHHHHhcCCCCCccc
Q 042750 129 CECAVCLNEFQENE----------KLRIIPNCGHVFHIDCIDVWLQSNANCPLCR 173 (337)
Q Consensus 129 ~~C~ICl~~~~~~~----------~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR 173 (337)
..|--|+..|.... ..-.-+.|++.|+.+|=.-|-+.=.+||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 46999999886431 1123457999999999665555556799995
No 147
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=43.43 E-value=44 Score=36.65 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=11.5
Q ss_pred cccCCCC-C--chhHHHHHHHH
Q 042750 275 FSMDSSA-D--PKLYLAIQEAV 293 (337)
Q Consensus 275 ~Smds~~-~--~~~~~~~~~~~ 293 (337)
+|+|--. + |+-|+.+|..-
T Consensus 635 VSLDGr~nA~VRHSyIDLq~~~ 656 (807)
T PF10577_consen 635 VSLDGRSNAQVRHSYIDLQRGG 656 (807)
T ss_pred EecCCCcchheehhhhhhhhcc
Confidence 6777632 2 66677676554
No 148
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.98 E-value=13 Score=37.35 Aligned_cols=43 Identities=26% Similarity=0.534 Sum_probs=31.9
Q ss_pred Cccccccccccc--CceeEecCCCCccccHHhHHHHHhcCCCCCcc
Q 042750 129 CECAVCLNEFQE--NEKLRIIPNCGHVFHIDCIDVWLQSNANCPLC 172 (337)
Q Consensus 129 ~~C~ICl~~~~~--~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlC 172 (337)
..|++|.-.+.- |-....-. |||.|+..|...|...+..|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 578888766543 33444555 89999999999998888878665
No 149
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=42.85 E-value=25 Score=28.41 Aligned_cols=11 Identities=27% Similarity=0.794 Sum_probs=4.7
Q ss_pred HHHHHHh-hccc
Q 042750 60 IFVIKCC-LNWH 70 (337)
Q Consensus 60 ~~~~~cc-~~~~ 70 (337)
+.++.|| .+|+
T Consensus 58 i~Lv~CC~~K~K 69 (98)
T PF07204_consen 58 IALVCCCRAKHK 69 (98)
T ss_pred HHHHHHhhhhhh
Confidence 3344444 4443
No 150
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=42.79 E-value=12 Score=27.61 Aligned_cols=35 Identities=23% Similarity=0.485 Sum_probs=17.9
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHH
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVW 162 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 162 (337)
...|.+|...|..-..-..-..||++|+..|....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 46899999999664433344469999999886543
No 151
>PF15102 TMEM154: TMEM154 protein family
Probab=42.66 E-value=6.1 Score=34.46 Aligned_cols=10 Identities=30% Similarity=0.929 Sum_probs=6.8
Q ss_pred HHhHHHHHhc
Q 042750 156 IDCIDVWLQS 165 (337)
Q Consensus 156 ~~Ci~~Wl~~ 165 (337)
.+=|++|+..
T Consensus 127 meeldkwm~s 136 (146)
T PF15102_consen 127 MEELDKWMNS 136 (146)
T ss_pred HHHHHhHHHh
Confidence 4557888764
No 152
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=42.09 E-value=24 Score=34.81 Aligned_cols=69 Identities=25% Similarity=0.441 Sum_probs=42.2
Q ss_pred CCHHHHHhCCceeeccccccccCCCCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCccc
Q 042750 102 LDEAVIRAIPIFQFKKKASRDFGERSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCR 173 (337)
Q Consensus 102 l~~~~i~~lP~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR 173 (337)
+.++.-..+|.-.|.... .........|-.|.++.......+-- .|.|.||.+|=.---.+=..||-|.
T Consensus 306 LARSyhhL~PL~~F~Eip--~~~~~~~~~Cf~C~~~~~~~~~y~C~-~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 306 LARSYHHLFPLKPFVEIP--ETEYNGSRFCFACQGELLSSGRYRCE-SCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred HHHHHHhhcCCcchhhcc--ccccCCCcceeeeccccCCCCcEEch-hccceeeccchHHHHhhhhcCCCcC
Confidence 344445556666665553 11223345699998877666655544 4999999999332222334699996
No 153
>PF15050 SCIMP: SCIMP protein
Probab=40.77 E-value=41 Score=28.47 Aligned_cols=7 Identities=29% Similarity=0.382 Sum_probs=3.4
Q ss_pred ChhHHHH
Q 042750 37 SFPVIAI 43 (337)
Q Consensus 37 ~f~ilvi 43 (337)
+|++++.
T Consensus 7 nFWiiLA 13 (133)
T PF15050_consen 7 NFWIILA 13 (133)
T ss_pred chHHHHH
Confidence 4555443
No 154
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=40.66 E-value=18 Score=31.68 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhhcccchhh
Q 042750 55 LVSYYIFVIKCCLNWHRIDI 74 (337)
Q Consensus 55 Li~~~~~~~~cc~~~~r~~l 74 (337)
|++++++-+-|...|++...
T Consensus 19 l~lLl~cgiGcvwhwkhr~~ 38 (158)
T PF11770_consen 19 LLLLLLCGIGCVWHWKHRDS 38 (158)
T ss_pred HHHHHHHhcceEEEeeccCc
Confidence 33444455556666665443
No 155
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.61 E-value=5.5 Score=34.32 Aligned_cols=45 Identities=36% Similarity=0.759 Sum_probs=26.3
Q ss_pred CCCCCCcccccccc-cccCceeEecCCCCcc-------ccHHhHHHH-HhcCCC---CCcccccC
Q 042750 124 GERSFCECAVCLNE-FQENEKLRIIPNCGHV-------FHIDCIDVW-LQSNAN---CPLCRTSI 176 (337)
Q Consensus 124 ~~~~~~~C~ICl~~-~~~~~~~~~lp~C~H~-------FH~~Ci~~W-l~~~~~---CPlCR~~l 176 (337)
+...+.+|.||+.. |.+ +|||. ||..|--+- |.+++. |-+|+...
T Consensus 61 Gv~ddatC~IC~KTKFAD--------G~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 61 GVGDDATCGICHKTKFAD--------GCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred ccCcCcchhhhhhccccc--------ccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 44556899999976 433 37775 444443322 223333 88887654
No 156
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=40.60 E-value=17 Score=23.98 Aligned_cols=26 Identities=35% Similarity=0.834 Sum_probs=15.3
Q ss_pred cccccccccccCce-------eEecCCCCcccc
Q 042750 130 ECAVCLNEFQENEK-------LRIIPNCGHVFH 155 (337)
Q Consensus 130 ~C~ICl~~~~~~~~-------~~~lp~C~H~FH 155 (337)
+|+-|...|..++. ...-+.|+|.|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 58888887765442 222335677664
No 157
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=39.68 E-value=31 Score=39.07 Aligned_cols=50 Identities=20% Similarity=0.459 Sum_probs=33.9
Q ss_pred CCcccccccccc---cCceeEecCCCCccccHHhHH-HHHhcCCCCCcccccCC
Q 042750 128 FCECAVCLNEFQ---ENEKLRIIPNCGHVFHIDCID-VWLQSNANCPLCRTSIS 177 (337)
Q Consensus 128 ~~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~Ci~-~Wl~~~~~CPlCR~~l~ 177 (337)
...|.||-++.. +|+.-...-.|+--.|..|.+ +.-..++.||.|++...
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 358999999864 333333333466779999985 23345788999988764
No 158
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=39.29 E-value=25 Score=34.58 Aligned_cols=47 Identities=21% Similarity=0.689 Sum_probs=35.1
Q ss_pred CcccccccccccCceeEecC-CCCccccHHhHHHHHhcCCCCCcccccC
Q 042750 129 CECAVCLNEFQENEKLRIIP-NCGHVFHIDCIDVWLQSNANCPLCRTSI 176 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l 176 (337)
..|+||.+.....+. -.+| .|++..|..|...-...+..||.||++.
T Consensus 250 ~s~p~~~~~~~~~d~-~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~ 297 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDS-NFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPY 297 (327)
T ss_pred CCCCCCCCccccccc-ccccccccccchhhhhhcccccCCCCCccCCcc
Confidence 689999998744332 2333 3788888888888888889999999554
No 159
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=37.94 E-value=45 Score=28.21 Aligned_cols=23 Identities=30% Similarity=0.480 Sum_probs=10.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Q 042750 37 SFPVIAIAIVGILATGFLLVSYYI 60 (337)
Q Consensus 37 ~f~ilviiii~il~~~~lLi~~~~ 60 (337)
-..|++.++.|+++++ +|++|++
T Consensus 66 i~~Ii~gv~aGvIg~I-lli~y~i 88 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGII-LLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred eeehhHHHHHHHHHHH-HHHHHHH
Confidence 3444444444544433 3444444
No 160
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=37.33 E-value=12 Score=30.35 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=21.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 042750 35 DTSFPVIAIAIVGILATGFLLVSYYIFV 62 (337)
Q Consensus 35 ~~~f~ilviiii~il~~~~lLi~~~~~~ 62 (337)
........++++++++++.+++++|+++
T Consensus 55 ~~~~~~~~iili~lls~v~IlVily~Iy 82 (101)
T PF06024_consen 55 ASKQNNGNIILISLLSFVCILVILYAIY 82 (101)
T ss_pred ccccccccchHHHHHHHHHHHHHHhhhe
Confidence 3567888888888888888888877654
No 161
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=37.19 E-value=34 Score=33.00 Aligned_cols=40 Identities=25% Similarity=0.446 Sum_probs=20.9
Q ss_pred CCCCCCCCCcccCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 042750 16 PPIRSPSNSIFGSRSSHNSDTSFPVIAIAIVGILATGFLLVS 57 (337)
Q Consensus 16 ~p~~~~~~~~~~~~~~~sS~~~f~ilviiii~il~~~~lLi~ 57 (337)
.|+...-.- |+...+.+.+.. ..++=|++|+.+++++++.
T Consensus 249 QaF~~~~~~-Fg~a~~C~~D~~-~~~vPIaVG~~La~lvliv 288 (306)
T PF01299_consen 249 QAFRVKNNT-FGTAEECSSDDT-SDLVPIAVGAALAGLVLIV 288 (306)
T ss_pred EEEEecCCC-CCChhcCCcCCc-cchHHHHHHHHHHHHHHHH
Confidence 343334444 777777777665 4444445555444444443
No 162
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=37.00 E-value=11 Score=36.45 Aligned_cols=9 Identities=11% Similarity=0.357 Sum_probs=0.0
Q ss_pred HHHHHhhcc
Q 042750 61 FVIKCCLNW 69 (337)
Q Consensus 61 ~~~~cc~~~ 69 (337)
+++.||+++
T Consensus 164 iIa~icyrr 172 (290)
T PF05454_consen 164 IIACICYRR 172 (290)
T ss_dssp ---------
T ss_pred HHHHHhhhh
Confidence 344555554
No 163
>PF14979 TMEM52: Transmembrane 52
Probab=36.84 E-value=62 Score=28.36 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=14.4
Q ss_pred CChhHHHHHHHHHHHHHH-HHHHHHHHHHH-Hhhcc
Q 042750 36 TSFPVIAIAIVGILATGF-LLVSYYIFVIK-CCLNW 69 (337)
Q Consensus 36 ~~f~ilviiii~il~~~~-lLi~~~~~~~~-cc~~~ 69 (337)
+.|..+|.+-+.++++++ ||..+...-++ ||+++
T Consensus 14 ~~W~~LWyIwLill~~~llLLCG~ta~C~rfCClrk 49 (154)
T PF14979_consen 14 TRWSSLWYIWLILLIGFLLLLCGLTASCVRFCCLRK 49 (154)
T ss_pred cceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455555443333333332 23333333445 66553
No 164
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.44 E-value=17 Score=35.23 Aligned_cols=38 Identities=16% Similarity=0.400 Sum_probs=27.8
Q ss_pred CCCcccccccccccCceeEecC-CCCccccHHhHHHHHhc
Q 042750 127 SFCECAVCLNEFQENEKLRIIP-NCGHVFHIDCIDVWLQS 165 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl~~ 165 (337)
....|.+|.|-+++..-+. .| .=.|.||.-|-++-++.
T Consensus 267 apLcCTLC~ERLEDTHFVQ-CPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CceeehhhhhhhccCceee-cCCCcccceecccCHHHHHh
Confidence 3478999999987754442 22 12699999999988865
No 165
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=36.42 E-value=25 Score=23.12 Aligned_cols=26 Identities=27% Similarity=0.750 Sum_probs=15.1
Q ss_pred cccccccccccCcee-------EecCCCCcccc
Q 042750 130 ECAVCLNEFQENEKL-------RIIPNCGHVFH 155 (337)
Q Consensus 130 ~C~ICl~~~~~~~~~-------~~lp~C~H~FH 155 (337)
+|+=|...|..++.. ..-++|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 578888887655421 12235777764
No 166
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=36.35 E-value=44 Score=32.56 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 042750 45 IVGILATGFLLVSYY 59 (337)
Q Consensus 45 ii~il~~~~lLi~~~ 59 (337)
+++|++++++++++|
T Consensus 262 iiaIliIVLIMvIIY 276 (299)
T PF02009_consen 262 IIAILIIVLIMVIIY 276 (299)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 167
>PRK14710 hypothetical protein; Provisional
Probab=36.13 E-value=29 Score=26.68 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=16.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH
Q 042750 36 TSFPVIAIAIVGILATGFLLVSYYIF 61 (337)
Q Consensus 36 ~~f~ilviiii~il~~~~lLi~~~~~ 61 (337)
.+...++|++.++++++++.+.-|++
T Consensus 6 sn~skm~ififaiii~v~lcv~tyly 31 (86)
T PRK14710 6 SNLSKMIIFIFAIIIIVVLCVITYLY 31 (86)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhee
Confidence 35666777777777766666655543
No 168
>PLN02436 cellulose synthase A
Probab=35.77 E-value=35 Score=38.67 Aligned_cols=49 Identities=22% Similarity=0.560 Sum_probs=34.0
Q ss_pred Ccccccccccc---cCceeEecCCCCccccHHhHHHHH-hcCCCCCcccccCC
Q 042750 129 CECAVCLNEFQ---ENEKLRIIPNCGHVFHIDCIDVWL-QSNANCPLCRTSIS 177 (337)
Q Consensus 129 ~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CPlCR~~l~ 177 (337)
..|.||-++.. +|+.-.....|+--.|..|.+-=- ..++.||.|++...
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 57999999963 344443333477779999985322 34778999998765
No 169
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=35.62 E-value=52 Score=25.75 Aligned_cols=51 Identities=20% Similarity=0.400 Sum_probs=19.8
Q ss_pred CCccccccccccc---CceeEecCCCCccccHHhHHHHH-hcCCCCCcccccCCC
Q 042750 128 FCECAVCLNEFQE---NEKLRIIPNCGHVFHIDCIDVWL-QSNANCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~---~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CPlCR~~l~~ 178 (337)
...|.||-++.-. ++.....-.|+--.+..|.+-=. ..++.||.|++....
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 4679999988643 33222222466778899987543 457889999976643
No 170
>PF15018 InaF-motif: TRP-interacting helix
Probab=35.56 E-value=46 Score=22.46 Aligned_cols=24 Identities=21% Similarity=0.456 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 042750 39 PVIAIAIVGILATGFLLVSYYIFV 62 (337)
Q Consensus 39 ~ilviiii~il~~~~lLi~~~~~~ 62 (337)
..++..++++-..+++|.+||+++
T Consensus 8 ~tV~~Yl~~VSl~Ai~LsiYY~f~ 31 (38)
T PF15018_consen 8 LTVVAYLFSVSLAAIVLSIYYIFF 31 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhee
Confidence 345667778888888888888764
No 171
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=34.75 E-value=13 Score=38.21 Aligned_cols=20 Identities=5% Similarity=0.057 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHHHHHH
Q 042750 35 DTSFPVIAIAIVGILATGFL 54 (337)
Q Consensus 35 ~~~f~ilviiii~il~~~~l 54 (337)
...+.+++++++|+++++++
T Consensus 348 ~~~~~~~l~vVlgvavlivV 367 (439)
T PF02480_consen 348 TSRGAALLGVVLGVAVLIVV 367 (439)
T ss_dssp --------------------
T ss_pred CCcccchHHHHHHHHHHHHH
Confidence 33444444444444333333
No 172
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=34.53 E-value=63 Score=24.43 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042750 42 AIAIVGILATGFLLVSYY 59 (337)
Q Consensus 42 viiii~il~~~~lLi~~~ 59 (337)
.+.++|+.+++++|++++
T Consensus 6 ~i~i~Gm~iVF~~L~lL~ 23 (79)
T PF04277_consen 6 QIMIIGMGIVFLVLILLI 23 (79)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345556655555444433
No 173
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.93 E-value=27 Score=33.19 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=28.1
Q ss_pred CCCCCcccccccccccCceeEecCCCCccccHHhHHHHHh
Q 042750 125 ERSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQ 164 (337)
Q Consensus 125 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~ 164 (337)
......|..||..+.+. .+.| =||+|+.+||-+++.
T Consensus 40 iK~FdcCsLtLqPc~dP---vit~-~GylfdrEaILe~il 75 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDP---VITP-DGYLFDREAILEYIL 75 (303)
T ss_pred cCCcceeeeecccccCC---ccCC-CCeeeeHHHHHHHHH
Confidence 34557899999998774 3445 799999999998863
No 174
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=33.63 E-value=25 Score=38.22 Aligned_cols=48 Identities=27% Similarity=0.535 Sum_probs=31.4
Q ss_pred CCCCccccccccccc----C-----ceeEecCCCCccccHHhHHHHHhcCCCCCcccccCC
Q 042750 126 RSFCECAVCLNEFQE----N-----EKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~----~-----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
..+..|+-|...|-. | ...-..|.|.|.-|.+=|.+ ...||+|...+.
T Consensus 1129 ~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1129 PYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSMES 1185 (1189)
T ss_pred ccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChhh
Confidence 345678888877732 1 12224457999988876544 578999987653
No 175
>PRK00523 hypothetical protein; Provisional
Probab=32.95 E-value=1.4e+02 Score=23.09 Aligned_cols=22 Identities=18% Similarity=-0.087 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042750 44 AIVGILATGFLLVSYYIFVIKC 65 (337)
Q Consensus 44 iii~il~~~~lLi~~~~~~~~c 65 (337)
++++++++++-+++-|++..++
T Consensus 8 I~l~i~~li~G~~~Gffiark~ 29 (72)
T PRK00523 8 LGLGIPLLIVGGIIGYFVSKKM 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 176
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=32.37 E-value=59 Score=25.77 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 042750 45 IVGILATGFLLVSY 58 (337)
Q Consensus 45 ii~il~~~~lLi~~ 58 (337)
|+.+++++++|+++
T Consensus 30 ILivLVIIiLlIml 43 (85)
T PF10717_consen 30 ILIVLVIIILLIML 43 (85)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 177
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=32.04 E-value=1.1e+02 Score=20.75 Aligned_cols=17 Identities=24% Similarity=0.293 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042750 49 LATGFLLVSYYIFVIKC 65 (337)
Q Consensus 49 l~~~~lLi~~~~~~~~c 65 (337)
++++++.+++|++..|-
T Consensus 16 ~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 16 MAIIIICMFYYACCYKK 32 (38)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 34444455555554443
No 178
>PHA02650 hypothetical protein; Provisional
Probab=31.51 E-value=1.2e+02 Score=23.72 Aligned_cols=29 Identities=21% Similarity=0.104 Sum_probs=13.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042750 36 TSFPVIAIAIVGILATGFLLVSYYIFVIKC 65 (337)
Q Consensus 36 ~~f~ilviiii~il~~~~lLi~~~~~~~~c 65 (337)
..+....+.++.+ +++++++++.+++.|.
T Consensus 44 ~~~~~~~~~ii~i-~~v~i~~l~~flYLK~ 72 (81)
T PHA02650 44 VSWFNGQNFIFLI-FSLIIVALFSFFVFKG 72 (81)
T ss_pred cCCchHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4466665555554 3344444444444443
No 179
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=31.24 E-value=37 Score=27.87 Aligned_cols=33 Identities=15% Similarity=0.363 Sum_probs=27.6
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHH
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWL 163 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl 163 (337)
+.|.||-.++..|+....+.+ -..|..|+..=.
T Consensus 3 WkC~iCg~~I~~gqlFTF~~k--G~VH~~C~~~~~ 35 (101)
T PF09943_consen 3 WKCYICGKPIYEGQLFTFTKK--GPVHYECFREKA 35 (101)
T ss_pred eEEEecCCeeeecceEEEecC--CcEeHHHHHHHH
Confidence 679999999999998877764 778999998743
No 180
>PHA02819 hypothetical protein; Provisional
Probab=30.80 E-value=1.3e+02 Score=23.15 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=13.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042750 35 DTSFPVIAIAIVGILATGFLLVSYYIFVIK 64 (337)
Q Consensus 35 ~~~f~ilviiii~il~~~~lLi~~~~~~~~ 64 (337)
........+.++.+ +.+++++++.+++.|
T Consensus 40 ~~~~~~~~~~ii~l-~~~~~~~~~~flYLK 68 (71)
T PHA02819 40 TKKSFLRYYLIIGL-VTIVFVIIFIIFYLK 68 (71)
T ss_pred ccCChhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34455555555554 444444444444433
No 181
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=30.55 E-value=16 Score=25.98 Aligned_cols=11 Identities=36% Similarity=1.075 Sum_probs=5.7
Q ss_pred CCCcccccCCC
Q 042750 168 NCPLCRTSISS 178 (337)
Q Consensus 168 ~CPlCR~~l~~ 178 (337)
.||+|.+++..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 79999988743
No 182
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=30.14 E-value=78 Score=29.76 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042750 40 VIAIAIVGILATGFLLVSYY 59 (337)
Q Consensus 40 ilviiii~il~~~~lLi~~~ 59 (337)
.++|++|.|.+.+|+|+.+|
T Consensus 192 pvvIaliVitl~vf~LvgLy 211 (259)
T PF07010_consen 192 PVVIALIVITLSVFTLVGLY 211 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555655555555544
No 183
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=30.12 E-value=83 Score=22.38 Aligned_cols=21 Identities=14% Similarity=0.510 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 042750 49 LATGFLLVSYYIFVIKCCLNW 69 (337)
Q Consensus 49 l~~~~lLi~~~~~~~~cc~~~ 69 (337)
+.++++.+.||.-+.++|...
T Consensus 9 vli~lv~~gy~~hmkrycraf 29 (54)
T PF13260_consen 9 VLIVLVVVGYFCHMKRYCRAF 29 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555677777777888654
No 184
>PRK01844 hypothetical protein; Provisional
Probab=29.95 E-value=1.1e+02 Score=23.54 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 042750 44 AIVGILATGFLLVSYYIFVIKCC 66 (337)
Q Consensus 44 iii~il~~~~lLi~~~~~~~~cc 66 (337)
++++++++++.+++-|++..++.
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~ 29 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYM 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 185
>KOG4482 consensus Sarcoglycan complex, alpha/epsilon subunits [Function unknown]
Probab=29.88 E-value=98 Score=31.25 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=21.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042750 29 RSSHNSDTSFPVIAIAIVGILATGFLLVSYYIFVIKCCLN 68 (337)
Q Consensus 29 ~~~~sS~~~f~ilviiii~il~~~~lLi~~~~~~~~cc~~ 68 (337)
+.+..-.-+|...+.+.++|...+++++++.+.++.||.+
T Consensus 284 ~~~e~p~Rdyy~df~~tfaIpl~Valll~~~La~imc~rr 323 (449)
T KOG4482|consen 284 PPPEQPPRDYYGDFLHTFAIPLGVALLLVLALAYIMCCRR 323 (449)
T ss_pred CCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3334444566655555555555555555555556667755
No 186
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=29.82 E-value=39 Score=23.69 Aligned_cols=34 Identities=24% Similarity=0.526 Sum_probs=23.9
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHH
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVW 162 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 162 (337)
..|.+|-..|..-..-..-..||++|+..|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 4699998888664433333369999999997654
No 187
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=29.68 E-value=40 Score=32.31 Aligned_cols=43 Identities=21% Similarity=0.423 Sum_probs=26.7
Q ss_pred CCcccccccccccCceeEecCCCC-ccccHHhHHHHH-hcCCCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCG-HVFHIDCIDVWL-QSNANCP 170 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~-H~FH~~Ci~~Wl-~~~~~CP 170 (337)
-.-|.||++---+|..-.-|+.-. =.=|.+|+++|- ..+..||
T Consensus 30 LsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 30 LSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP 74 (285)
T ss_pred eeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC
Confidence 356999988765553222222111 136899999994 5578898
No 188
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=29.51 E-value=32 Score=26.05 Aligned_cols=12 Identities=25% Similarity=0.861 Sum_probs=8.7
Q ss_pred cccHHhHHHHHh
Q 042750 153 VFHIDCIDVWLQ 164 (337)
Q Consensus 153 ~FH~~Ci~~Wl~ 164 (337)
-||..|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 190
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=29.49 E-value=1.1e+02 Score=25.02 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=19.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042750 34 SDTSFPVIAIAIVGILATGFLLVSYYIFVI 63 (337)
Q Consensus 34 S~~~f~ilviiii~il~~~~lLi~~~~~~~ 63 (337)
+-.-|-|++|.+.++++.+=+++.+++++.
T Consensus 14 sL~PWeIfLItLasVvvavGl~aGLfFcvR 43 (106)
T PF14654_consen 14 SLKPWEIFLITLASVVVAVGLFAGLFFCVR 43 (106)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344477777777777777666666665543
No 191
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=29.23 E-value=1e+02 Score=23.74 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=12.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHH
Q 042750 35 DTSFPVIAIAIVGILATGFLLVS 57 (337)
Q Consensus 35 ~~~f~ilviiii~il~~~~lLi~ 57 (337)
...+.-+++++++++++++++++
T Consensus 42 ~~~~~~~~~~ii~ii~v~ii~~l 64 (72)
T PF12575_consen 42 NNKNFNWIILIISIIFVLIIVLL 64 (72)
T ss_pred CCCcchHHHHHHHHHHHHHHHHH
Confidence 34455566666666555555444
No 192
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.85 E-value=43 Score=27.22 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=28.2
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHH
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWL 163 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl 163 (337)
.+.|.||-+.+.+|++....+ .-..|.+|+..=.
T Consensus 6 ewkC~VCg~~iieGqkFTF~~--kGsVH~eCl~~s~ 39 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK--KGSVHYECLAESK 39 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee--CCcchHHHHHHHH
Confidence 478999999999999887776 5668999988743
No 193
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=28.71 E-value=46 Score=35.72 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=9.1
Q ss_pred CCCCCCChhHHHHHHHHH
Q 042750 31 SHNSDTSFPVIAIAIVGI 48 (337)
Q Consensus 31 ~~sS~~~f~ilviiii~i 48 (337)
..+-..+.||++.+++.+
T Consensus 262 ~~s~~~NlWII~gVlvPv 279 (684)
T PF12877_consen 262 AKSPPNNLWIIAGVLVPV 279 (684)
T ss_pred CCCCCCCeEEEehHhHHH
Confidence 344456666655443333
No 194
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=28.11 E-value=20 Score=36.24 Aligned_cols=51 Identities=27% Similarity=0.599 Sum_probs=0.0
Q ss_pred CCcccccccccc-------------cC---ceeEecCCCCccccHHhHHHHHhc---------CCCCCcccccCCCC
Q 042750 128 FCECAVCLNEFQ-------------EN---EKLRIIPNCGHVFHIDCIDVWLQS---------NANCPLCRTSISST 179 (337)
Q Consensus 128 ~~~C~ICl~~~~-------------~~---~~~~~lp~C~H~FH~~Ci~~Wl~~---------~~~CPlCR~~l~~~ 179 (337)
..+|++|+..=. .+ -.....| |||+--.....-|-+. +..||.|-..|...
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~ 403 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGE 403 (416)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccCC
Confidence 678999997521 11 1233455 9999888889999643 35699998887643
No 195
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.17 E-value=61 Score=25.07 Aligned_cols=47 Identities=23% Similarity=0.582 Sum_probs=30.4
Q ss_pred ccccccccccCceeEecCCC--CccccHHhHHHHHhcCCCCCcccccCCCCCC
Q 042750 131 CAVCLNEFQENEKLRIIPNC--GHVFHIDCIDVWLQSNANCPLCRTSISSTTT 181 (337)
Q Consensus 131 C~ICl~~~~~~~~~~~lp~C--~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~~~ 181 (337)
|--|-.++-.+..-..+ | .|.||.+|.+.-| +..||.|-..+...+.
T Consensus 8 CECCDrDLpp~s~dA~I--CtfEcTFCadCae~~l--~g~CPnCGGelv~RP~ 56 (84)
T COG3813 8 CECCDRDLPPDSTDARI--CTFECTFCADCAENRL--HGLCPNCGGELVARPI 56 (84)
T ss_pred CcccCCCCCCCCCceeE--EEEeeehhHhHHHHhh--cCcCCCCCchhhcCcC
Confidence 55566665443322222 4 5889999998754 5789999877765544
No 196
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=27.05 E-value=57 Score=37.00 Aligned_cols=50 Identities=24% Similarity=0.489 Sum_probs=33.8
Q ss_pred CCcccccccccc---cCceeEecCCCCccccHHhHHHH-HhcCCCCCcccccCC
Q 042750 128 FCECAVCLNEFQ---ENEKLRIIPNCGHVFHIDCIDVW-LQSNANCPLCRTSIS 177 (337)
Q Consensus 128 ~~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~Ci~~W-l~~~~~CPlCR~~l~ 177 (337)
...|.||-++.. +|+.-...-.|+--.|..|.+-= -..++.||.|++...
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 467999999864 33333333347777999998532 234778999988765
No 197
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=27.00 E-value=11 Score=36.13 Aligned_cols=45 Identities=22% Similarity=0.278 Sum_probs=20.4
Q ss_pred CCcccccccccccCceeEecC--CCCccccHHhHHHHHhcCCCCCccc
Q 042750 128 FCECAVCLNEFQENEKLRIIP--NCGHVFHIDCIDVWLQSNANCPLCR 173 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl~~~~~CPlCR 173 (337)
...|+||-..-..+. ++.-. +-.|.+|.-|-..|-..+..||.|-
T Consensus 172 ~g~CPvCGs~P~~s~-l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg 218 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSV-LRGGEREGKRYLHCSLCGTEWRFVRIKCPYCG 218 (290)
T ss_dssp -SS-TTT---EEEEE-EE------EEEEEETTT--EEE--TTS-TTT-
T ss_pred CCcCCCCCCcCceEE-EecCCCCccEEEEcCCCCCeeeecCCCCcCCC
Confidence 368999977643221 11110 1246677888888988888999994
No 198
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=26.94 E-value=34 Score=21.85 Aligned_cols=9 Identities=33% Similarity=0.936 Sum_probs=6.5
Q ss_pred CCCCCcccc
Q 042750 166 NANCPLCRT 174 (337)
Q Consensus 166 ~~~CPlCR~ 174 (337)
...||+|..
T Consensus 17 ~~~CP~Cg~ 25 (33)
T cd00350 17 PWVCPVCGA 25 (33)
T ss_pred CCcCcCCCC
Confidence 347999965
No 199
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=26.91 E-value=51 Score=30.68 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 042750 44 AIVGILATGFLLVSYY 59 (337)
Q Consensus 44 iii~il~~~~lLi~~~ 59 (337)
++|+|+++++++++|.
T Consensus 18 iaI~IV~lLIiiva~~ 33 (217)
T PF07423_consen 18 IAIGIVSLLIIIVAYQ 33 (217)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3444444444444433
No 200
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=26.90 E-value=27 Score=24.75 Aligned_cols=38 Identities=26% Similarity=0.592 Sum_probs=20.0
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCccccc
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTS 175 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~ 175 (337)
..|+.|-+.|.... + +.|+.-...-+ .....||+|...
T Consensus 3 f~CP~C~~~~~~~~-L-----~~H~~~~H~~~---~~~v~CPiC~~~ 40 (54)
T PF05605_consen 3 FTCPYCGKGFSESS-L-----VEHCEDEHRSE---SKNVVCPICSSR 40 (54)
T ss_pred cCCCCCCCccCHHH-H-----HHHHHhHCcCC---CCCccCCCchhh
Confidence 67999998655422 1 33431111100 123559999753
No 201
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=26.77 E-value=1.6e+02 Score=24.76 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=13.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042750 37 SFPVIAIAIVGILATGFLLVSYYIFVI 63 (337)
Q Consensus 37 ~f~ilviiii~il~~~~lLi~~~~~~~ 63 (337)
+...+++.+|.++.+.+.|+.|.+|++
T Consensus 59 ~~~lffvglii~LivSLaLVsFvIFLi 85 (128)
T PF15145_consen 59 SRSLFFVGLIIVLIVSLALVSFVIFLI 85 (128)
T ss_pred ceeehHHHHHHHHHHHHHHHHHHHHhe
Confidence 344444444455555555555555544
No 202
>PHA03164 hypothetical protein; Provisional
Probab=26.67 E-value=1.2e+02 Score=23.73 Aligned_cols=10 Identities=30% Similarity=0.308 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 042750 47 GILATGFLLV 56 (337)
Q Consensus 47 ~il~~~~lLi 56 (337)
..++++.+|+
T Consensus 64 tgLaIamILf 73 (88)
T PHA03164 64 TGLAIAMILF 73 (88)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 203
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=25.99 E-value=1.3e+02 Score=30.44 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=13.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042750 36 TSFPVIAIAIVGILATGFLLVSYYIFVIKCCLN 68 (337)
Q Consensus 36 ~~f~ilviiii~il~~~~lLi~~~~~~~~cc~~ 68 (337)
-+|.--+++.+.|-+++++++++++.++.||.+
T Consensus 279 R~y~~d~~vtl~iPl~i~llL~llLs~Imc~rR 311 (386)
T PF05510_consen 279 RDYFPDFLVTLAIPLIIALLLLLLLSYIMCCRR 311 (386)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHheech
Confidence 344433333334333333333334444555533
No 204
>PHA02975 hypothetical protein; Provisional
Probab=25.84 E-value=1.8e+02 Score=22.16 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=8.5
Q ss_pred ChhHHHHHHHHHHHHHHH
Q 042750 37 SFPVIAIAIVGILATGFL 54 (337)
Q Consensus 37 ~f~ilviiii~il~~~~l 54 (337)
.....++.++.+++++++
T Consensus 40 ~~~~~~~~ii~i~~v~~~ 57 (69)
T PHA02975 40 KSSLSIILIIFIIFITCI 57 (69)
T ss_pred CCchHHHHHHHHHHHHHH
Confidence 455555555554333333
No 205
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.49 E-value=1.6e+02 Score=21.34 Aligned_cols=10 Identities=10% Similarity=0.471 Sum_probs=4.2
Q ss_pred hhHHHHHHHH
Q 042750 38 FPVIAIAIVG 47 (337)
Q Consensus 38 f~ilviiii~ 47 (337)
+|..++++++
T Consensus 18 ~pl~l~il~~ 27 (68)
T PF06305_consen 18 LPLGLLILIA 27 (68)
T ss_pred chHHHHHHHH
Confidence 4544443333
No 206
>PHA02844 putative transmembrane protein; Provisional
Probab=25.27 E-value=1.4e+02 Score=23.07 Aligned_cols=28 Identities=14% Similarity=0.033 Sum_probs=12.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042750 36 TSFPVIAIAIVGILATGFLLVSYYIFVIK 64 (337)
Q Consensus 36 ~~f~ilviiii~il~~~~lLi~~~~~~~~ 64 (337)
.......+.+|.+ +.+++++++.+++.|
T Consensus 43 ~~~~~~~~~ii~i-~~v~~~~~~~flYLK 70 (75)
T PHA02844 43 VCSSSTKIWILTI-IFVVFATFLTFLYLK 70 (75)
T ss_pred cCChhHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 4455555545443 333333333333333
No 207
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=25.12 E-value=1.5e+02 Score=26.06 Aligned_cols=6 Identities=33% Similarity=0.611 Sum_probs=3.3
Q ss_pred ccccCC
Q 042750 12 SQALPP 17 (337)
Q Consensus 12 ~~~~~p 17 (337)
++-|.|
T Consensus 3 seffqp 8 (189)
T PF05568_consen 3 SEFFQP 8 (189)
T ss_pred cccccc
Confidence 345666
No 208
>PRK11827 hypothetical protein; Provisional
Probab=25.02 E-value=25 Score=26.12 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=15.8
Q ss_pred HHHHhcCCCCCcccccCCCC
Q 042750 160 DVWLQSNANCPLCRTSISST 179 (337)
Q Consensus 160 ~~Wl~~~~~CPlCR~~l~~~ 179 (337)
++||..--.||+|+.++...
T Consensus 2 d~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred ChHHHhheECCCCCCcCeEc
Confidence 46777777899999988654
No 209
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=24.39 E-value=52 Score=32.41 Aligned_cols=45 Identities=27% Similarity=0.600 Sum_probs=33.8
Q ss_pred CCCcccccccccccCceeEecCCCCccccHHhHHHHHhc---CCCCCcc
Q 042750 127 SFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS---NANCPLC 172 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CPlC 172 (337)
.-..|++--+.-.+......+. |||+.-.+-++..-+. ...||-|
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred ceeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 3468999777766666676776 9999999998886544 2349999
No 210
>PF10812 DUF2561: Protein of unknown function (DUF2561); InterPro: IPR024381 This family of proteins with unknown function appears to be found predominantly in Mycobacterium spp.
Probab=24.04 E-value=1.1e+02 Score=28.26 Aligned_cols=28 Identities=21% Similarity=0.097 Sum_probs=17.4
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 042750 29 RSSHNSDTSFPVIAIAIVGILATGFLLV 56 (337)
Q Consensus 29 ~~~~sS~~~f~ilviiii~il~~~~lLi 56 (337)
.++++|.+.|.++.+|+++.++++-.+.
T Consensus 55 ~~s~ss~T~WvLY~VI~VSaaVIagAVP 82 (207)
T PF10812_consen 55 ESSGSSGTPWVLYAVIGVSAAVIAGAVP 82 (207)
T ss_pred CcCCCCCCCEeehHHHHHHHHHHHHHHH
Confidence 3456777888877766666555444433
No 211
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=23.40 E-value=1.8e+02 Score=19.10 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 042750 43 IAIVGILATGFLLVS 57 (337)
Q Consensus 43 iiii~il~~~~lLi~ 57 (337)
..+++++.+.++++.
T Consensus 9 l~vv~iLt~~ILvFW 23 (34)
T PF08113_consen 9 LGVVMILTAFILVFW 23 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHH
Confidence 344444444444333
No 212
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=23.08 E-value=39 Score=33.26 Aligned_cols=41 Identities=39% Similarity=0.843 Sum_probs=26.2
Q ss_pred CCcccccccccccCce-----------eEecCCCCcc--ccHHhHHHHHhc------CCCCCcccc
Q 042750 128 FCECAVCLNEFQENEK-----------LRIIPNCGHV--FHIDCIDVWLQS------NANCPLCRT 174 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~-----------~~~lp~C~H~--FH~~Ci~~Wl~~------~~~CPlCR~ 174 (337)
-.+|++=|..+....+ -..+ +|||+ +| .|-.. ...||+||.
T Consensus 290 RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl-~CGHV~G~H-----~WG~~e~~g~~~r~CPmC~~ 349 (429)
T KOG3842|consen 290 RPQCPVGLNTLAFPSKRRKRVVDEKQPWVYL-NCGHVHGYH-----NWGVRENTGQRERECPMCRV 349 (429)
T ss_pred CCCCCcccceeecccccccccccccCCeEEE-ecccccccc-----ccccccccCcccCcCCeeee
Confidence 4689998887653322 2234 59998 56 47533 334999975
No 213
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=22.50 E-value=1.4e+02 Score=26.48 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 042750 38 FPVIAIAIVGILATGFLLVSYY 59 (337)
Q Consensus 38 f~ilviiii~il~~~~lLi~~~ 59 (337)
.+.+.-.++.++++..++++||
T Consensus 91 ~~~l~R~~~Vl~g~s~l~i~yf 112 (163)
T PF06679_consen 91 SPMLKRALYVLVGLSALAILYF 112 (163)
T ss_pred ccchhhhHHHHHHHHHHHHHHH
Confidence 3433333333333333333333
No 214
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.47 E-value=17 Score=34.63 Aligned_cols=47 Identities=30% Similarity=0.656 Sum_probs=35.4
Q ss_pred CcccccccccccCc---eeEecCC-------CCccccHHhHHHHHhc-CCCCCccccc
Q 042750 129 CECAVCLNEFQENE---KLRIIPN-------CGHVFHIDCIDVWLQS-NANCPLCRTS 175 (337)
Q Consensus 129 ~~C~ICl~~~~~~~---~~~~lp~-------C~H~FH~~Ci~~Wl~~-~~~CPlCR~~ 175 (337)
..|.||...|...+ ..+++.. |+|..+..|++.-+.. ...||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 57999999998432 2333333 9999999999998765 3579999875
No 215
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=22.40 E-value=57 Score=31.58 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 042750 46 VGILATGFLLVSYY 59 (337)
Q Consensus 46 i~il~~~~lLi~~~ 59 (337)
+.+++++++|+++|
T Consensus 266 lvllil~vvliiLY 279 (295)
T TIGR01478 266 LVLIILTVVLIILY 279 (295)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 216
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=22.27 E-value=55 Score=23.18 Aligned_cols=22 Identities=27% Similarity=0.830 Sum_probs=11.0
Q ss_pred CCccccHHhHHHHHhcCCCCCcc
Q 042750 150 CGHVFHIDCIDVWLQSNANCPLC 172 (337)
Q Consensus 150 C~H~FH~~Ci~~Wl~~~~~CPlC 172 (337)
|||.|-..= ..-......||.|
T Consensus 34 Cgh~w~~~v-~~R~~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKASV-NDRTRRGKGCPYC 55 (55)
T ss_pred CCCeeEccH-hhhccCCCCCCCC
Confidence 555544321 1111345669887
No 217
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=21.90 E-value=1.1e+02 Score=30.50 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 042750 45 IVGILATGFLLVSYYI 60 (337)
Q Consensus 45 ii~il~~~~lLi~~~~ 60 (337)
+|+|++++++++++|+
T Consensus 316 iIAIvvIVLIMvIIYL 331 (353)
T TIGR01477 316 IIAILIIVLIMVIIYL 331 (353)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555544443
No 218
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=21.88 E-value=51 Score=31.41 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=29.8
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCC--CCcc
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNAN--CPLC 172 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~--CPlC 172 (337)
...|+|-...+... ++ -.+|||+|-.+=|...+....+ ||+=
T Consensus 176 s~rdPis~~~I~nP--vi-SkkC~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP--VI-SKKCGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred cccCchhhhhhhch--hh-hcCcCcchhhhhHHHHhccCceeecccc
Confidence 46788876666553 22 2369999999999999876444 7763
No 219
>PHA03054 IMV membrane protein; Provisional
Probab=21.81 E-value=2.2e+02 Score=21.86 Aligned_cols=27 Identities=11% Similarity=-0.016 Sum_probs=12.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 042750 35 DTSFPVIAIAIVGILATGFLLVSYYIFV 62 (337)
Q Consensus 35 ~~~f~ilviiii~il~~~~lLi~~~~~~ 62 (337)
........+.++.+++ +++++++.+++
T Consensus 42 ~~~~~~~~~~ii~l~~-v~~~~l~~flY 68 (72)
T PHA03054 42 NTGCWGWYWLIIIFFI-VLILLLLIYLY 68 (72)
T ss_pred ccCCchHHHHHHHHHH-HHHHHHHHHHH
Confidence 3445666665555433 33333333333
No 220
>PTZ00046 rifin; Provisional
Probab=21.47 E-value=1.2e+02 Score=30.48 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 042750 45 IVGILATGFLLVSYYI 60 (337)
Q Consensus 45 ii~il~~~~lLi~~~~ 60 (337)
+++|++++++++++|+
T Consensus 321 iiAIvVIVLIMvIIYL 336 (358)
T PTZ00046 321 IVAIVVIVLIMVIIYL 336 (358)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555444443
No 221
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=21.37 E-value=10 Score=29.08 Aligned_cols=40 Identities=25% Similarity=0.557 Sum_probs=19.6
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
..|+.|..++.... +|.++..|-.. +.....||-|..++.
T Consensus 2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG--------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET--------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC--------CEEECcccccc-ceecccCCCcccHHH
Confidence 46889988865432 55555566443 234556898887764
No 222
>PLN02195 cellulose synthase A
Probab=21.34 E-value=1e+02 Score=34.86 Aligned_cols=50 Identities=18% Similarity=0.355 Sum_probs=34.3
Q ss_pred CCccccccccccc---CceeEecCCCCccccHHhHHHHH-hcCCCCCcccccCC
Q 042750 128 FCECAVCLNEFQE---NEKLRIIPNCGHVFHIDCIDVWL-QSNANCPLCRTSIS 177 (337)
Q Consensus 128 ~~~C~ICl~~~~~---~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CPlCR~~l~ 177 (337)
...|.||-++... |+.-...-.|+--.|..|.+-=- ..++.||.|++...
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 3579999987643 33333333578889999985322 34778999998776
No 223
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=21.32 E-value=29 Score=24.61 Aligned_cols=21 Identities=29% Similarity=0.676 Sum_probs=15.5
Q ss_pred ceeEecCCCCccccHHhHHHH
Q 042750 142 EKLRIIPNCGHVFHIDCIDVW 162 (337)
Q Consensus 142 ~~~~~lp~C~H~FH~~Ci~~W 162 (337)
.....-+.|+|.|+..|...|
T Consensus 38 ~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 38 CNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCeeECCCCCCeECCCCCCcC
Confidence 334455468999999998887
No 224
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=21.29 E-value=88 Score=29.08 Aligned_cols=30 Identities=13% Similarity=0.380 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042750 40 VIAIAIVGILATGFLLVSYYIFVIKCCLNW 69 (337)
Q Consensus 40 ilviiii~il~~~~lLi~~~~~~~~cc~~~ 69 (337)
|++.++.|..++.|+++++..++.-||.+.
T Consensus 53 IliYcVTg~sllsli~VtvaalYsSC~~~p 82 (235)
T PF11359_consen 53 ILIYCVTGFSLLSLIVVTVAALYSSCCRRP 82 (235)
T ss_pred hheeeehhHHHHHHHHHHHHHHHHHHHhCC
Confidence 444456666666677777777777777654
No 225
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=21.24 E-value=80 Score=31.98 Aligned_cols=7 Identities=29% Similarity=1.037 Sum_probs=3.1
Q ss_pred HHHhhcc
Q 042750 63 IKCCLNW 69 (337)
Q Consensus 63 ~~cc~~~ 69 (337)
.+||.++
T Consensus 43 ~~CC~r~ 49 (406)
T PF04906_consen 43 CRCCCRR 49 (406)
T ss_pred HHhhCCC
Confidence 3455443
No 226
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=21.13 E-value=53 Score=37.40 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042750 38 FPVIAIAIVGILATGFLLVSYYIFVIKC 65 (337)
Q Consensus 38 f~ilviiii~il~~~~lLi~~~~~~~~c 65 (337)
.|+ |||++++++.+++|+++.+++.||
T Consensus 976 vp~-wiIi~svl~GLLlL~llv~~LwK~ 1002 (1030)
T KOG3637|consen 976 VPL-WIIILSVLGGLLLLALLVLLLWKC 1002 (1030)
T ss_pred cce-eeehHHHHHHHHHHHHHHHHHHhc
Confidence 443 445777777777766666555555
No 227
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=20.93 E-value=99 Score=24.63 Aligned_cols=37 Identities=22% Similarity=0.495 Sum_probs=29.9
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
..|.-|...+.--+.+ | |-.|+..+..|..|++++..
T Consensus 34 S~C~~C~~~L~~~~lI---P----------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 34 SHCPHCGHPLSWWDLI---P----------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CcCcCCCCcCcccccc---h----------HHHHHHhCCCCcccCCCCCh
Confidence 6799999888775544 5 67799999999999998843
No 228
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=20.83 E-value=2.2e+02 Score=21.63 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 042750 40 VIAIAIVGILATGFL 54 (337)
Q Consensus 40 ilviiii~il~~~~l 54 (337)
..+++++|+++.+++
T Consensus 58 ~~lil~l~~~~Gl~l 72 (82)
T PF13807_consen 58 RALILALGLFLGLIL 72 (82)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444433333
No 229
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=20.81 E-value=7.2 Score=26.60 Aligned_cols=11 Identities=18% Similarity=-0.028 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 042750 46 VGILATGFLLV 56 (337)
Q Consensus 46 i~il~~~~lLi 56 (337)
+.+.++++++.
T Consensus 19 VPV~vI~~vl~ 29 (40)
T PF08693_consen 19 VPVGVIIIVLG 29 (40)
T ss_pred echHHHHHHHH
Confidence 33333333333
No 230
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=20.07 E-value=78 Score=23.53 Aligned_cols=15 Identities=33% Similarity=0.961 Sum_probs=10.0
Q ss_pred CCCCCcccccCCCCC
Q 042750 166 NANCPLCRTSISSTT 180 (337)
Q Consensus 166 ~~~CPlCR~~l~~~~ 180 (337)
+..||+|+..+....
T Consensus 2 k~~CPlCkt~~n~gs 16 (61)
T PF05715_consen 2 KSLCPLCKTTLNVGS 16 (61)
T ss_pred CccCCcccchhhcCC
Confidence 356999988774433
Done!