Query 042750
Match_columns 337
No_of_seqs 328 out of 2030
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 15:48:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042750.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042750hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 1.1E-16 3.7E-21 126.4 7.4 79 96-178 11-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 2.6E-16 8.9E-21 119.4 2.6 68 106-178 5-72 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 1.6E-14 5.3E-19 102.7 4.2 51 127-177 4-54 (55)
4 2kiz_A E3 ubiquitin-protein li 99.5 4.2E-14 1.4E-18 105.2 5.7 54 125-179 11-64 (69)
5 2ep4_A Ring finger protein 24; 99.5 6.6E-14 2.3E-18 105.5 6.1 53 126-179 13-65 (74)
6 2ect_A Ring finger protein 126 99.4 6.8E-14 2.3E-18 106.5 5.7 56 125-181 12-67 (78)
7 2ecl_A Ring-box protein 2; RNF 99.4 9E-14 3.1E-18 107.4 4.3 51 128-178 15-76 (81)
8 2ecm_A Ring finger and CHY zin 99.4 3.7E-13 1.3E-17 95.4 4.7 50 127-177 4-54 (55)
9 1v87_A Deltex protein 2; ring- 99.3 1.4E-12 4.8E-17 106.2 7.0 51 128-179 25-95 (114)
10 3ng2_A RNF4, snurf, ring finge 99.3 8.5E-13 2.9E-17 98.2 4.8 55 126-181 8-66 (71)
11 2ea6_A Ring finger protein 4; 99.3 1.4E-12 4.7E-17 96.3 5.2 51 126-177 13-67 (69)
12 3dpl_R Ring-box protein 1; ubi 99.3 1.4E-12 5E-17 106.1 4.9 50 127-177 36-100 (106)
13 2xeu_A Ring finger protein 4; 99.3 1.2E-12 4.1E-17 95.2 3.7 52 128-180 3-58 (64)
14 1chc_A Equine herpes virus-1 r 99.3 5E-12 1.7E-16 93.4 5.4 48 128-178 5-52 (68)
15 2d8s_A Cellular modulator of i 99.3 4.2E-12 1.4E-16 98.3 5.0 54 126-181 13-73 (80)
16 2ecn_A Ring finger protein 141 99.2 3.3E-12 1.1E-16 95.1 3.5 50 126-180 13-62 (70)
17 2d8t_A Dactylidin, ring finger 99.2 6.5E-12 2.2E-16 94.0 4.0 49 126-178 13-61 (71)
18 2djb_A Polycomb group ring fin 99.2 1.8E-11 6.2E-16 91.8 5.9 52 126-180 13-64 (72)
19 2ct2_A Tripartite motif protei 99.2 2.5E-11 8.6E-16 93.8 6.8 53 126-179 13-69 (88)
20 4a0k_B E3 ubiquitin-protein li 99.2 2.6E-12 9E-17 106.4 0.5 52 127-178 47-112 (117)
21 2csy_A Zinc finger protein 183 99.1 3.3E-11 1.1E-15 92.3 4.9 48 126-177 13-60 (81)
22 2ct0_A Non-SMC element 1 homol 99.1 4.9E-11 1.7E-15 91.0 5.7 51 127-180 14-66 (74)
23 2ysl_A Tripartite motif-contai 99.1 6.2E-11 2.1E-15 88.6 5.5 50 126-179 18-70 (73)
24 4ayc_A E3 ubiquitin-protein li 99.1 2.6E-11 8.9E-16 102.4 3.7 45 129-177 54-98 (138)
25 2yur_A Retinoblastoma-binding 99.1 6.1E-11 2.1E-15 89.5 5.0 50 126-178 13-64 (74)
26 2ecy_A TNF receptor-associated 99.1 8.1E-11 2.8E-15 86.6 4.8 50 126-179 13-63 (66)
27 4ap4_A E3 ubiquitin ligase RNF 99.1 7.8E-11 2.7E-15 97.2 4.0 53 127-180 6-62 (133)
28 1t1h_A Gspef-atpub14, armadill 99.1 1.6E-10 5.4E-15 87.7 5.3 49 126-178 6-55 (78)
29 1g25_A CDK-activating kinase a 99.0 1.4E-10 4.9E-15 85.1 4.2 52 128-180 3-57 (65)
30 2ecw_A Tripartite motif-contai 99.0 2.2E-10 7.7E-15 87.4 5.2 50 126-179 17-72 (85)
31 2ecv_A Tripartite motif-contai 99.0 2.5E-10 8.7E-15 87.1 5.3 50 126-179 17-72 (85)
32 3lrq_A E3 ubiquitin-protein li 99.0 1.2E-10 4.2E-15 93.0 3.6 47 128-178 22-70 (100)
33 2ysj_A Tripartite motif-contai 99.0 3.2E-10 1.1E-14 82.6 4.8 43 126-172 18-63 (63)
34 2y43_A E3 ubiquitin-protein li 99.0 2.7E-10 9.2E-15 90.5 4.3 48 128-178 22-69 (99)
35 2ckl_A Polycomb group ring fin 99.0 2.9E-10 1E-14 91.7 4.3 48 128-178 15-62 (108)
36 2egp_A Tripartite motif-contai 99.0 1.1E-10 3.7E-15 88.4 1.3 49 126-178 10-65 (79)
37 4ap4_A E3 ubiquitin ligase RNF 99.0 3.5E-10 1.2E-14 93.3 4.2 52 127-179 71-126 (133)
38 2ckl_B Ubiquitin ligase protei 98.9 4.5E-10 1.5E-14 97.3 4.6 48 128-178 54-102 (165)
39 3fl2_A E3 ubiquitin-protein li 98.9 4.8E-10 1.6E-14 92.7 4.5 47 128-178 52-99 (124)
40 2ecj_A Tripartite motif-contai 98.9 4.8E-10 1.6E-14 79.9 3.8 43 126-172 13-58 (58)
41 3ztg_A E3 ubiquitin-protein li 98.9 5.6E-10 1.9E-14 87.2 4.4 48 126-176 11-60 (92)
42 1jm7_A BRCA1, breast cancer ty 98.9 9.1E-10 3.1E-14 88.8 3.9 46 129-178 22-70 (112)
43 1z6u_A NP95-like ring finger p 98.8 1.7E-09 5.8E-14 92.9 4.6 48 128-179 78-126 (150)
44 2vje_A E3 ubiquitin-protein li 98.8 2.2E-09 7.7E-14 79.0 3.7 47 127-177 7-56 (64)
45 3hct_A TNF receptor-associated 98.8 2E-09 6.7E-14 88.4 3.5 49 126-178 16-65 (118)
46 3l11_A E3 ubiquitin-protein li 98.8 9.3E-10 3.2E-14 89.6 0.9 46 128-177 15-61 (115)
47 1rmd_A RAG1; V(D)J recombinati 98.8 2.7E-09 9.2E-14 87.0 3.7 47 128-178 23-70 (116)
48 2kr4_A Ubiquitin conjugation f 98.8 4.9E-09 1.7E-13 81.5 4.3 48 126-177 12-59 (85)
49 2vje_B MDM4 protein; proto-onc 98.8 4E-09 1.4E-13 77.4 3.4 50 126-177 5-55 (63)
50 2y1n_A E3 ubiquitin-protein li 98.7 6.1E-09 2.1E-13 102.1 5.1 48 128-179 332-380 (389)
51 2kre_A Ubiquitin conjugation f 98.7 6.4E-09 2.2E-13 83.4 4.3 49 126-178 27-75 (100)
52 3k1l_B Fancl; UBC, ring, RWD, 98.7 2.8E-09 9.5E-14 102.5 2.0 53 126-178 306-373 (381)
53 1wgm_A Ubiquitin conjugation f 98.7 1E-08 3.4E-13 82.0 4.6 49 126-178 20-69 (98)
54 1e4u_A Transcriptional repress 98.7 1.7E-08 5.9E-13 77.4 5.2 54 126-180 9-64 (78)
55 3knv_A TNF receptor-associated 98.7 6.7E-09 2.3E-13 88.3 2.7 49 126-178 29-78 (141)
56 1bor_A Transcription factor PM 98.7 5.9E-09 2E-13 74.5 1.7 47 126-179 4-50 (56)
57 1jm7_B BARD1, BRCA1-associated 98.6 8E-09 2.7E-13 84.5 1.8 44 128-177 22-66 (117)
58 4ic3_A E3 ubiquitin-protein li 98.6 1.1E-08 3.8E-13 77.2 2.1 43 128-178 24-67 (74)
59 2yu4_A E3 SUMO-protein ligase 98.5 5.9E-08 2E-12 76.6 3.9 47 126-175 5-59 (94)
60 2c2l_A CHIP, carboxy terminus 98.5 5.2E-08 1.8E-12 89.8 4.1 48 126-177 206-254 (281)
61 1wim_A KIAA0161 protein; ring 98.5 9E-08 3.1E-12 75.2 3.8 48 127-175 4-61 (94)
62 1vyx_A ORF K3, K3RING; zinc-bi 98.5 1E-07 3.6E-12 69.4 3.8 48 127-177 5-58 (60)
63 3hcs_A TNF receptor-associated 98.5 7.7E-08 2.6E-12 83.4 3.5 49 126-178 16-65 (170)
64 2ea5_A Cell growth regulator w 98.4 1.6E-07 5.6E-12 69.9 4.3 46 125-178 12-58 (68)
65 2ecg_A Baculoviral IAP repeat- 98.4 1.2E-07 4E-12 71.6 2.7 42 129-178 26-68 (75)
66 2f42_A STIP1 homology and U-bo 98.3 2.5E-07 8.7E-12 81.7 3.8 49 126-178 104-153 (179)
67 2yho_A E3 ubiquitin-protein li 98.3 2E-07 6.8E-12 71.4 1.7 42 129-178 19-61 (79)
68 2bay_A PRE-mRNA splicing facto 98.1 1.4E-06 4.7E-11 63.6 3.1 48 129-179 4-51 (61)
69 3t6p_A Baculoviral IAP repeat- 98.1 6.5E-07 2.2E-11 86.7 1.6 43 128-178 295-338 (345)
70 3htk_C E3 SUMO-protein ligase 98.1 1.5E-06 5E-11 80.9 3.0 49 126-177 179-231 (267)
71 3nw0_A Non-structural maintena 97.9 9.2E-06 3.1E-10 74.7 5.4 50 127-179 179-230 (238)
72 3vk6_A E3 ubiquitin-protein li 97.8 1.2E-05 4.2E-10 64.1 3.5 46 130-178 3-49 (101)
73 2ko5_A Ring finger protein Z; 95.3 0.033 1.1E-06 43.8 6.0 53 124-181 24-76 (99)
74 2lri_C Autoimmune regulator; Z 93.3 0.067 2.3E-06 39.2 3.6 46 127-176 11-60 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 90.9 0.15 5.2E-06 39.5 3.2 34 128-162 3-36 (101)
76 1wil_A KIAA1045 protein; ring 85.8 0.66 2.2E-05 35.7 3.5 35 126-162 13-47 (89)
77 2l5u_A Chromodomain-helicase-D 85.0 0.51 1.7E-05 33.7 2.5 45 126-174 9-57 (61)
78 1we9_A PHD finger family prote 83.9 0.24 8.3E-06 35.5 0.4 49 126-174 4-57 (64)
79 3u5n_A E3 ubiquitin-protein li 83.8 0.29 1E-05 43.3 1.0 47 126-176 5-55 (207)
80 3o36_A Transcription intermedi 81.5 0.36 1.2E-05 41.8 0.6 45 128-176 4-52 (184)
81 1mm2_A MI2-beta; PHD, zinc fin 80.3 0.49 1.7E-05 33.8 0.9 47 126-176 7-57 (61)
82 2k16_A Transcription initiatio 79.8 0.48 1.6E-05 35.0 0.7 50 127-177 17-70 (75)
83 3lqh_A Histone-lysine N-methyl 79.1 0.76 2.6E-05 40.2 1.9 47 129-175 3-63 (183)
84 1f62_A Transcription factor WS 75.6 1.3 4.5E-05 30.1 1.9 44 130-174 2-49 (51)
85 2yql_A PHD finger protein 21A; 75.2 0.42 1.4E-05 33.5 -0.8 44 126-173 7-54 (56)
86 1wep_A PHF8; structural genomi 72.2 2.8 9.5E-05 31.2 3.1 49 127-176 11-64 (79)
87 2lbm_A Transcriptional regulat 70.2 4.6 0.00016 33.8 4.4 45 125-173 60-115 (142)
88 2klu_A T-cell surface glycopro 70.0 3.7 0.00013 30.0 3.2 24 37-61 6-29 (70)
89 3v43_A Histone acetyltransfera 69.9 1.2 4.2E-05 35.5 0.7 45 130-174 63-111 (112)
90 1xwh_A Autoimmune regulator; P 69.6 0.8 2.7E-05 33.1 -0.4 46 126-175 6-55 (66)
91 2knc_A Integrin alpha-IIB; tra 68.3 7.1 0.00024 27.4 4.3 23 43-65 14-36 (54)
92 3m62_A Ubiquitin conjugation f 68.3 3.6 0.00012 44.5 4.1 49 126-178 889-938 (968)
93 2l43_A N-teminal domain from h 68.2 1.6 5.5E-05 33.5 1.1 51 126-176 23-76 (88)
94 2ysm_A Myeloid/lymphoid or mix 67.7 1.5 5.3E-05 34.6 0.9 38 126-164 5-42 (111)
95 1weo_A Cellulose synthase, cat 67.6 13 0.00046 28.7 6.1 51 127-177 15-69 (93)
96 1fp0_A KAP-1 corepressor; PHD 66.9 2.9 9.8E-05 32.3 2.2 47 125-175 22-72 (88)
97 2ro1_A Transcription intermedi 65.9 1.3 4.5E-05 38.7 0.1 44 128-175 2-49 (189)
98 2puy_A PHD finger protein 21A; 65.3 1.2 4.2E-05 31.4 -0.1 46 127-176 4-53 (60)
99 2vpb_A Hpygo1, pygopus homolog 65.2 4.6 0.00016 29.1 3.0 34 127-160 7-41 (65)
100 2l8s_A Integrin alpha-1; trans 64.8 7.4 0.00025 27.3 3.8 22 44-65 12-33 (54)
101 2lv9_A Histone-lysine N-methyl 63.7 2.7 9.1E-05 32.8 1.5 43 129-173 29-74 (98)
102 2knc_B Integrin beta-3; transm 63.0 7.2 0.00025 29.3 3.8 22 46-67 15-36 (79)
103 2jwa_A Receptor tyrosine-prote 63.0 16 0.00054 24.5 5.0 18 36-53 9-26 (44)
104 2ri7_A Nucleosome-remodeling f 62.1 1.6 5.5E-05 37.1 -0.0 48 127-175 7-59 (174)
105 2yt5_A Metal-response element- 61.9 4.3 0.00015 28.9 2.3 51 126-176 4-62 (66)
106 2e6s_A E3 ubiquitin-protein li 61.0 1.5 5E-05 32.9 -0.4 45 129-174 27-76 (77)
107 2k1a_A Integrin alpha-IIB; sin 60.8 11 0.00039 24.9 4.0 23 43-65 12-34 (42)
108 3ql9_A Transcriptional regulat 59.6 12 0.00039 30.9 4.7 46 125-174 54-110 (129)
109 3asl_A E3 ubiquitin-protein li 58.8 1.7 6E-05 31.8 -0.3 44 130-174 20-68 (70)
110 2kgg_A Histone demethylase jar 58.4 3.5 0.00012 28.2 1.2 44 130-173 4-52 (52)
111 2e6r_A Jumonji/ARID domain-con 57.6 1.4 4.8E-05 34.1 -1.1 49 126-175 14-66 (92)
112 1wem_A Death associated transc 57.4 4.7 0.00016 29.6 1.9 47 128-176 16-71 (76)
113 3v43_A Histone acetyltransfera 55.4 16 0.00056 28.7 4.9 33 128-160 5-42 (112)
114 3shb_A E3 ubiquitin-protein li 53.8 2.1 7.3E-05 32.0 -0.6 44 130-174 28-76 (77)
115 2klu_A T-cell surface glycopro 53.7 11 0.00036 27.6 3.1 25 45-69 10-34 (70)
116 1wen_A Inhibitor of growth fam 52.3 7.8 0.00027 28.3 2.3 44 127-175 15-65 (71)
117 1wev_A Riken cDNA 1110020M19; 51.8 2.8 9.7E-05 32.0 -0.2 49 128-176 16-73 (88)
118 2ku3_A Bromodomain-containing 51.2 15 0.0005 26.9 3.7 49 126-174 14-65 (71)
119 2k1k_A Ephrin type-A receptor 51.0 31 0.0011 22.2 4.8 21 37-57 9-29 (38)
120 2xb1_A Pygopus homolog 2, B-ce 51.0 8.1 0.00028 30.4 2.4 48 129-176 4-62 (105)
121 3ask_A E3 ubiquitin-protein li 50.7 3.3 0.00011 37.4 0.0 44 130-174 176-224 (226)
122 1weu_A Inhibitor of growth fam 50.2 6.8 0.00023 30.3 1.7 44 127-175 35-85 (91)
123 1zbd_B Rabphilin-3A; G protein 49.9 8 0.00027 31.9 2.3 34 127-160 54-88 (134)
124 2cs3_A Protein C14ORF4, MY039 49.7 27 0.00092 26.5 4.9 39 126-165 13-52 (93)
125 1x61_A Thyroid receptor intera 48.6 17 0.00057 25.6 3.6 40 128-177 5-44 (72)
126 1wfk_A Zinc finger, FYVE domai 48.2 13 0.00043 28.3 3.0 52 126-177 7-65 (88)
127 2yw8_A RUN and FYVE domain-con 48.0 12 0.0004 28.0 2.8 34 128-161 19-52 (82)
128 3t7l_A Zinc finger FYVE domain 47.9 10 0.00035 28.9 2.4 34 129-162 21-54 (90)
129 4gne_A Histone-lysine N-methyl 47.6 12 0.0004 29.7 2.8 45 126-176 13-63 (107)
130 1x4k_A Skeletal muscle LIM-pro 47.5 17 0.00059 25.4 3.6 40 129-178 6-45 (72)
131 1joc_A EEA1, early endosomal a 47.2 10 0.00034 30.8 2.4 34 128-161 69-102 (125)
132 1z2q_A LM5-1; membrane protein 47.0 13 0.00043 27.9 2.8 35 128-162 21-55 (84)
133 1wyh_A SLIM 2, skeletal muscle 46.6 17 0.00057 25.5 3.3 40 129-178 6-45 (72)
134 2kwj_A Zinc finger protein DPF 45.9 13 0.00045 29.4 2.9 34 129-162 2-41 (114)
135 1wew_A DNA-binding family prot 45.6 7.8 0.00027 28.7 1.4 47 127-175 15-72 (78)
136 1y02_A CARP2, FYVE-ring finger 45.4 2.8 9.6E-05 34.1 -1.2 48 128-175 19-66 (120)
137 2dj7_A Actin-binding LIM prote 44.5 20 0.00068 26.2 3.6 40 127-177 14-53 (80)
138 1x4l_A Skeletal muscle LIM-pro 44.2 21 0.00072 25.1 3.6 41 128-178 5-47 (72)
139 1iml_A CRIP, cysteine rich int 43.8 12 0.00042 26.7 2.2 38 130-178 2-39 (76)
140 2cu8_A Cysteine-rich protein 2 43.3 18 0.00063 25.7 3.2 40 128-178 9-48 (76)
141 3o70_A PHD finger protein 13; 43.2 5.1 0.00017 29.1 0.0 47 126-174 17-66 (68)
142 1vfy_A Phosphatidylinositol-3- 42.5 16 0.00056 26.5 2.7 32 129-160 12-43 (73)
143 3i2d_A E3 SUMO-protein ligase 42.3 18 0.00061 34.9 3.7 49 129-180 250-302 (371)
144 1x4u_A Zinc finger, FYVE domai 42.1 16 0.00053 27.4 2.6 31 128-158 14-44 (84)
145 1x63_A Skeletal muscle LIM-pro 41.9 31 0.0011 24.8 4.3 40 129-178 16-55 (82)
146 1x68_A FHL5 protein; four-and- 41.0 28 0.00096 24.8 3.9 40 129-178 6-47 (76)
147 1g47_A Pinch protein; LIM doma 41.0 20 0.0007 25.4 3.1 41 128-178 11-51 (77)
148 2co8_A NEDD9 interacting prote 40.4 24 0.00082 25.7 3.5 43 127-180 14-56 (82)
149 4fo9_A E3 SUMO-protein ligase 40.1 21 0.00072 34.3 3.8 48 129-179 216-267 (360)
150 3zyq_A Hepatocyte growth facto 39.9 13 0.00046 33.0 2.3 35 128-162 164-198 (226)
151 1dvp_A HRS, hepatocyte growth 39.6 12 0.00043 32.9 2.0 34 128-161 161-194 (220)
152 2k9j_B Integrin beta-3; transm 39.4 42 0.0014 22.1 4.1 23 44-66 12-34 (43)
153 2rsd_A E3 SUMO-protein ligase 38.7 3.2 0.00011 30.0 -1.7 45 129-174 11-64 (68)
154 2gmg_A Hypothetical protein PF 38.5 11 0.00039 29.9 1.4 25 149-178 72-96 (105)
155 2ks1_B Epidermal growth factor 38.4 34 0.0012 22.8 3.5 9 47-55 20-28 (44)
156 3mpx_A FYVE, rhogef and PH dom 38.2 6.7 0.00023 37.7 0.0 49 128-176 375-430 (434)
157 3f6q_B LIM and senescent cell 38.2 22 0.00074 24.7 2.8 42 128-179 11-52 (72)
158 1afo_A Glycophorin A; integral 37.9 61 0.0021 21.1 4.5 22 40-61 11-32 (40)
159 2knc_B Integrin beta-3; transm 37.8 65 0.0022 24.0 5.5 32 36-67 9-40 (79)
160 2ysm_A Myeloid/lymphoid or mix 35.2 5.6 0.00019 31.3 -0.9 45 130-175 56-104 (111)
161 3a1b_A DNA (cytosine-5)-methyl 34.8 29 0.00098 29.5 3.4 37 124-164 75-113 (159)
162 2l2t_A Receptor tyrosine-prote 32.8 1.1E+02 0.0037 20.3 5.4 11 37-47 8-18 (44)
163 2vnf_A ING 4, P29ING4, inhibit 32.4 8.9 0.0003 27.0 -0.1 42 128-174 10-58 (60)
164 3c6w_A P28ING5, inhibitor of g 32.2 10 0.00034 26.7 0.1 41 129-174 10-57 (59)
165 2pv0_B DNA (cytosine-5)-methyl 32.1 33 0.0011 33.3 3.7 47 124-174 89-147 (386)
166 2l3k_A Rhombotin-2, linker, LI 31.6 20 0.00068 28.3 1.8 37 130-176 10-46 (123)
167 2d8z_A Four and A half LIM dom 31.5 36 0.0012 23.6 3.1 39 128-178 5-43 (70)
168 2zet_C Melanophilin; complex, 31.0 27 0.00093 29.4 2.6 33 127-159 67-100 (153)
169 2d8y_A Eplin protein; LIM doma 30.7 39 0.0013 24.9 3.3 41 128-179 15-55 (91)
170 1iij_A ERBB-2 receptor protein 29.3 28 0.00095 22.2 1.8 10 39-48 8-17 (35)
171 1wee_A PHD finger family prote 27.8 25 0.00086 25.3 1.7 47 128-175 16-66 (72)
172 2pk7_A Uncharacterized protein 27.8 14 0.00048 27.0 0.2 21 159-179 1-21 (69)
173 1x62_A C-terminal LIM domain p 27.6 35 0.0012 24.5 2.5 38 128-177 15-52 (79)
174 2cup_A Skeletal muscle LIM-pro 26.8 57 0.002 24.2 3.7 38 129-176 6-43 (101)
175 1x64_A Alpha-actinin-2 associa 26.8 51 0.0017 24.2 3.3 39 128-178 25-63 (89)
176 1z60_A TFIIH basal transcripti 26.6 28 0.00094 24.7 1.6 42 129-172 16-58 (59)
177 1nyp_A Pinch protein; LIM doma 26.5 43 0.0015 22.9 2.7 38 129-178 6-43 (66)
178 2cor_A Pinch protein; LIM doma 26.4 51 0.0017 23.7 3.2 39 128-178 15-53 (79)
179 2d8x_A Protein pinch; LIM doma 26.1 53 0.0018 22.7 3.2 40 128-179 5-44 (70)
180 2egq_A FHL1 protein; LIM domai 25.8 69 0.0024 22.5 3.8 40 129-178 16-58 (77)
181 2kwj_A Zinc finger protein DPF 25.7 8.2 0.00028 30.7 -1.5 45 130-175 60-108 (114)
182 1zfo_A LAsp-1; LIM domain, zin 25.5 21 0.00073 21.5 0.7 28 129-159 4-31 (31)
183 1a7i_A QCRP2 (LIM1); LIM domai 25.5 20 0.00069 25.9 0.8 39 129-178 8-46 (81)
184 2l2t_A Receptor tyrosine-prote 25.5 99 0.0034 20.5 4.1 6 45-50 13-18 (44)
185 2o35_A Hypothetical protein DU 25.0 28 0.00096 27.4 1.5 12 154-165 43-54 (105)
186 3fyb_A Protein of unknown func 24.7 29 0.00098 27.3 1.5 11 154-164 42-52 (104)
187 3j1r_A Archaeal adhesion filam 24.3 1.2E+02 0.0039 17.9 3.9 17 40-56 4-20 (26)
188 2dar_A PDZ and LIM domain prot 24.0 63 0.0022 23.7 3.4 39 128-178 25-63 (90)
189 2l4z_A DNA endonuclease RBBP8, 24.0 42 0.0014 26.7 2.5 39 128-177 61-99 (123)
190 2l8s_A Integrin alpha-1; trans 24.0 1.6E+02 0.0054 20.4 5.1 24 37-60 9-32 (54)
191 1wig_A KIAA1808 protein; LIM d 23.7 59 0.002 23.0 3.0 37 129-177 6-42 (73)
192 3mjh_B Early endosome antigen 23.7 17 0.00057 23.0 -0.0 14 129-142 6-19 (34)
193 3kv5_D JMJC domain-containing 23.3 16 0.00056 36.4 -0.2 47 129-176 38-89 (488)
194 2jny_A Uncharacterized BCR; st 23.0 14 0.00048 26.9 -0.6 20 160-179 4-23 (67)
195 2ehe_A Four and A half LIM dom 22.8 69 0.0024 22.9 3.3 40 129-178 16-55 (82)
196 2g6q_A Inhibitor of growth pro 22.5 15 0.00051 26.1 -0.5 44 128-174 11-59 (62)
197 2cur_A Skeletal muscle LIM-pro 22.1 79 0.0027 21.7 3.4 37 129-177 6-42 (69)
198 1rut_X Flinc4, fusion protein 21.8 49 0.0017 28.0 2.6 38 130-177 71-108 (188)
199 1v6g_A Actin binding LIM prote 21.2 52 0.0018 23.5 2.3 38 129-178 16-53 (81)
200 2jmi_A Protein YNG1, ING1 homo 20.8 23 0.0008 27.1 0.3 45 127-174 25-75 (90)
201 2iyb_E Testin, TESS, TES; LIM 20.5 56 0.0019 22.4 2.3 39 130-178 4-44 (65)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=126.43 Aligned_cols=79 Identities=24% Similarity=0.603 Sum_probs=68.7
Q ss_pred chhcCCCCHHHHHhCCceeeccccccccCCCCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCccccc
Q 042750 96 ALETRGLDEAVIRAIPIFQFKKKASRDFGERSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTS 175 (337)
Q Consensus 96 ~~~~~gl~~~~i~~lP~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~ 175 (337)
.....|++++.|+.||.+++.... .....+..|+||++.|..++.++.+| |+|.||..||..|+..+.+||+||..
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~---~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDH---GAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCM 86 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTC---SSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred CcCCCCCCHHHHHhCCCeeecccc---cccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCcc
Confidence 446789999999999999987764 22345678999999999999999998 99999999999999999999999998
Q ss_pred CCC
Q 042750 176 ISS 178 (337)
Q Consensus 176 l~~ 178 (337)
+..
T Consensus 87 ~~~ 89 (91)
T 2l0b_A 87 FPP 89 (91)
T ss_dssp SSC
T ss_pred CCC
Confidence 853
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.6e-16 Score=119.37 Aligned_cols=68 Identities=32% Similarity=0.899 Sum_probs=58.0
Q ss_pred HHHhCCceeeccccccccCCCCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 106 VIRAIPIFQFKKKASRDFGERSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 106 ~i~~lP~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
.++.||.+++.... ......+|+||+++|..++.++.+| |+|.||..||..|+..+.+||+||+.+..
T Consensus 5 ~i~~lp~~~~~~~~----~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 5 SSGQLPSYRFNPNN----HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CCSSCCCEEBCSSS----CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred hHhhCCcEEecCcc----ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 35678988887653 2344578999999999999899998 99999999999999999999999998854
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.49 E-value=1.6e-14 Score=102.73 Aligned_cols=51 Identities=49% Similarity=1.189 Sum_probs=46.3
Q ss_pred CCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCC
Q 042750 127 SFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
+..+|+||++.|..++.+..++.|+|.||..||.+|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 346899999999998888888779999999999999999999999998873
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=4.2e-14 Score=105.19 Aligned_cols=54 Identities=41% Similarity=0.999 Sum_probs=48.0
Q ss_pred CCCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCC
Q 042750 125 ERSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISST 179 (337)
Q Consensus 125 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~ 179 (337)
......|+||++.|..++.+..++ |+|.||..||..|+..+.+||+||..+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 345578999999998888888898 999999999999999999999999998553
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=6.6e-14 Score=105.51 Aligned_cols=53 Identities=38% Similarity=0.893 Sum_probs=47.7
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISST 179 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~ 179 (337)
..+.+|+||++.|..+..+.+++ |+|.||..||..|+..+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 44578999999999988888898 999999999999999999999999998553
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.45 E-value=6.8e-14 Score=106.50 Aligned_cols=56 Identities=39% Similarity=0.921 Sum_probs=49.4
Q ss_pred CCCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCCCC
Q 042750 125 ERSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISSTTT 181 (337)
Q Consensus 125 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~~~ 181 (337)
.....+|+||++.|..+..+..++ |+|.||..||..|+..+.+||+||..+.....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 345678999999999888888898 99999999999999999999999999866543
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=9e-14 Score=107.43 Aligned_cols=51 Identities=27% Similarity=0.779 Sum_probs=42.2
Q ss_pred CCccccccccccc-----------CceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 128 FCECAVCLNEFQE-----------NEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~-----------~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
+..|+||++.|.. ++.+++++.|+|.||.+||++||..+.+||+||+.+..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 3568888888854 45566676799999999999999999999999998753
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.37 E-value=3.7e-13 Score=95.38 Aligned_cols=50 Identities=30% Similarity=0.839 Sum_probs=43.0
Q ss_pred CCCcccccccccccCc-eeEecCCCCccccHHhHHHHHhcCCCCCcccccCC
Q 042750 127 SFCECAVCLNEFQENE-KLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
...+|+||++.|..++ .+..++ |+|.||..||.+|+..+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4578999999996644 566676 9999999999999999999999998874
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.34 E-value=1.4e-12 Score=106.16 Aligned_cols=51 Identities=24% Similarity=0.646 Sum_probs=41.1
Q ss_pred CCcccccccccccCc---------------eeEecCCCCccccHHhHHHHH-----hcCCCCCcccccCCCC
Q 042750 128 FCECAVCLNEFQENE---------------KLRIIPNCGHVFHIDCIDVWL-----QSNANCPLCRTSISST 179 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~Ci~~Wl-----~~~~~CPlCR~~l~~~ 179 (337)
+.+|+||++.|..+. .++.++ |+|.||..||..|+ ..+.+||+||+.+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 468999999997643 334666 99999999999999 4467899999988654
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.33 E-value=8.5e-13 Score=98.22 Aligned_cols=55 Identities=27% Similarity=0.693 Sum_probs=45.7
Q ss_pred CCCCcccccccccccC----ceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCCCC
Q 042750 126 RSFCECAVCLNEFQEN----EKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISSTTT 181 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~~~ 181 (337)
.++.+|+||++.|... ..+..++ |||.||..||.+|+..+.+||+||..+.....
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 3457899999999763 4456676 99999999999999999999999999875443
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.4e-12 Score=96.28 Aligned_cols=51 Identities=29% Similarity=0.762 Sum_probs=43.4
Q ss_pred CCCCcccccccccccC----ceeEecCCCCccccHHhHHHHHhcCCCCCcccccCC
Q 042750 126 RSFCECAVCLNEFQEN----EKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
.....|+||++.|... ..+..++ |||.||..||..|+..+.+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 4457899999999763 3446676 9999999999999999999999999874
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.30 E-value=1.4e-12 Score=106.08 Aligned_cols=50 Identities=30% Similarity=0.675 Sum_probs=42.2
Q ss_pred CCCcccccccccccCc---------------eeEecCCCCccccHHhHHHHHhcCCCCCcccccCC
Q 042750 127 SFCECAVCLNEFQENE---------------KLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
.+..|+||++.|.... .++.++ |+|.||..||+.||..+.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 3578999999997541 355666 9999999999999999999999999864
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.29 E-value=1.2e-12 Score=95.22 Aligned_cols=52 Identities=29% Similarity=0.768 Sum_probs=44.0
Q ss_pred CCcccccccccccC----ceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCCC
Q 042750 128 FCECAVCLNEFQEN----EKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISSTT 180 (337)
Q Consensus 128 ~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~~ 180 (337)
+.+|+||++.+... +.+..++ |||.||..||.+|+..+.+||+||..+....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 46899999999763 3456676 9999999999999999999999999986543
No 14
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.26 E-value=5e-12 Score=93.45 Aligned_cols=48 Identities=33% Similarity=0.875 Sum_probs=41.8
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
...|+||++.+... ...++ |||.||..||..|+..+.+||+||..+..
T Consensus 5 ~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 46899999998653 46777 99999999999999999999999998853
No 15
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.2e-12 Score=98.26 Aligned_cols=54 Identities=31% Similarity=0.701 Sum_probs=44.6
Q ss_pred CCCCcccccccccccCceeEecCCCC-----ccccHHhHHHHHhcC--CCCCcccccCCCCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCG-----HVFHIDCIDVWLQSN--ANCPLCRTSISSTTT 181 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~Ci~~Wl~~~--~~CPlCR~~l~~~~~ 181 (337)
.....|.||+++|..++.+ ++| |+ |.||.+||++||..+ .+||+||..+.....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 3457899999999877766 588 86 999999999999875 489999999866543
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.3e-12 Score=95.09 Aligned_cols=50 Identities=34% Similarity=0.925 Sum_probs=43.2
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISSTT 180 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~~ 180 (337)
.....|+||++.+.. ..++ |+|.||..||..|+..+.+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 345789999999876 5677 9999999999999999999999999986544
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=6.5e-12 Score=94.03 Aligned_cols=49 Identities=33% Similarity=0.644 Sum_probs=42.1
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
.....|+||++.+.+ ...++ |+|.||..||..|+..+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 445789999999865 45567 99999999999999999999999998854
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.8e-11 Score=91.80 Aligned_cols=52 Identities=23% Similarity=0.560 Sum_probs=42.8
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISSTT 180 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~~ 180 (337)
.....|+||++.|.+. +.+++ |+|.||..||..|+..+.+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 13 TPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 3457899999998763 33346 9999999999999999999999999986543
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2.5e-11 Score=93.77 Aligned_cols=53 Identities=30% Similarity=0.806 Sum_probs=44.8
Q ss_pred CCCCcccccccccccCce-eEecCCCCccccHHhHHHHHhcC---CCCCcccccCCCC
Q 042750 126 RSFCECAVCLNEFQENEK-LRIIPNCGHVFHIDCIDVWLQSN---ANCPLCRTSISST 179 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~Ci~~Wl~~~---~~CPlCR~~l~~~ 179 (337)
....+|+||++.|...+. ...++ |||.||..||..|+..+ .+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 445789999999987664 66777 99999999999999875 7899999987654
No 20
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.18 E-value=2.6e-12 Score=106.36 Aligned_cols=52 Identities=31% Similarity=0.637 Sum_probs=0.8
Q ss_pred CCCcccccccccccC-------------c-eeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 127 SFCECAVCLNEFQEN-------------E-KLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~-------------~-~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
.+..|+||+++|... + ...+++.|+|.||..||+.||..+.+||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 346899999999752 1 122222499999999999999999999999998743
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=3.3e-11 Score=92.33 Aligned_cols=48 Identities=21% Similarity=0.529 Sum_probs=41.5
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
.....|+||++.|.. ..+++ |||.||..||..|+....+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 445789999999865 34577 9999999999999999999999999884
No 22
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=4.9e-11 Score=90.95 Aligned_cols=51 Identities=24% Similarity=0.638 Sum_probs=42.6
Q ss_pred CCCcccccccccccCceeEecCCCCccccHHhHHHHHhcC--CCCCcccccCCCCC
Q 042750 127 SFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSN--ANCPLCRTSISSTT 180 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CPlCR~~l~~~~ 180 (337)
...+|+||++.+..++... .|+|.||.+||.+||+.+ .+||+||+.+....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 3478999999998765443 599999999999999887 88999999886543
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=6.2e-11 Score=88.61 Aligned_cols=50 Identities=34% Similarity=0.740 Sum_probs=41.0
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHh---cCCCCCcccccCCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQ---SNANCPLCRTSISST 179 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~---~~~~CPlCR~~l~~~ 179 (337)
.....|+||++.|.. ...++ |||.||..||..|+. .+..||+||..+...
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 445789999999875 44566 999999999999996 456899999988543
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.11 E-value=2.6e-11 Score=102.40 Aligned_cols=45 Identities=33% Similarity=0.920 Sum_probs=40.3
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
..|+||++.|.. ..++| |||.||..||..|+..+.+||+||..+.
T Consensus 54 ~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 54 LQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp SBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 579999999865 45677 9999999999999999999999999884
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.10 E-value=6.1e-11 Score=89.55 Aligned_cols=50 Identities=26% Similarity=0.618 Sum_probs=40.8
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcC--CCCCcccccCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSN--ANCPLCRTSISS 178 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CPlCR~~l~~ 178 (337)
.....|+||++.|... ..++.|||.||..||..|+..+ .+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3457899999999763 3466699999999999999865 689999997543
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=8.1e-11 Score=86.63 Aligned_cols=50 Identities=26% Similarity=0.571 Sum_probs=40.8
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHh-cCCCCCcccccCCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQ-SNANCPLCRTSISST 179 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CPlCR~~l~~~ 179 (337)
.....|+||++.+.+.. .++ |||.||..||..|+. .+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPK---QTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSCC---CCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCee---ECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 34578999999987643 356 999999999999994 567899999998653
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.05 E-value=7.8e-11 Score=97.19 Aligned_cols=53 Identities=28% Similarity=0.733 Sum_probs=44.5
Q ss_pred CCCcccccccccccC----ceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCCC
Q 042750 127 SFCECAVCLNEFQEN----EKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISSTT 180 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~~ 180 (337)
+..+|+||++.|.+. ..+..++ |||.||..||.+|+..+.+||+||..+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 457899999999764 4456776 9999999999999999999999999885443
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.05 E-value=1.6e-10 Score=87.65 Aligned_cols=49 Identities=18% Similarity=0.588 Sum_probs=41.5
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhc-CCCCCcccccCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS-NANCPLCRTSISS 178 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CPlCR~~l~~ 178 (337)
.....|+||++.|.+ ..+++ |||.||..||..|+.. +.+||+||..+..
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 445789999999876 34567 9999999999999987 7889999998854
No 29
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.03 E-value=1.4e-10 Score=85.07 Aligned_cols=52 Identities=23% Similarity=0.605 Sum_probs=41.2
Q ss_pred CCccccccc-ccccCcee-EecCCCCccccHHhHHHHHhc-CCCCCcccccCCCCC
Q 042750 128 FCECAVCLN-EFQENEKL-RIIPNCGHVFHIDCIDVWLQS-NANCPLCRTSISSTT 180 (337)
Q Consensus 128 ~~~C~ICl~-~~~~~~~~-~~lp~C~H~FH~~Ci~~Wl~~-~~~CPlCR~~l~~~~ 180 (337)
+..|+||++ .|...... ..++ |||.||..||..|+.. ...||+||..+....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 468999999 77776543 3455 9999999999999765 467999999986544
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.02 E-value=2.2e-10 Score=87.42 Aligned_cols=50 Identities=30% Similarity=0.695 Sum_probs=41.8
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhc------CCCCCcccccCCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS------NANCPLCRTSISST 179 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~------~~~CPlCR~~l~~~ 179 (337)
.....|+||++.|... ..++ |+|.||..||..|+.. ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 3457899999998764 3577 9999999999999987 67899999988653
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=2.5e-10 Score=87.12 Aligned_cols=50 Identities=26% Similarity=0.712 Sum_probs=41.8
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhc------CCCCCcccccCCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS------NANCPLCRTSISST 179 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~------~~~CPlCR~~l~~~ 179 (337)
.....|+||++.|... ..++ |||.||..||..|+.. ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 3457899999998763 3456 9999999999999987 77899999998653
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.02 E-value=1.2e-10 Score=93.03 Aligned_cols=47 Identities=28% Similarity=0.862 Sum_probs=40.0
Q ss_pred CCcccccccccccCceeEe-cCCCCccccHHhHHHHHhcC-CCCCcccccCCC
Q 042750 128 FCECAVCLNEFQENEKLRI-IPNCGHVFHIDCIDVWLQSN-ANCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~-lp~C~H~FH~~Ci~~Wl~~~-~~CPlCR~~l~~ 178 (337)
...|+||++.|.. ... ++ |||.||..||..|+... .+||+||..+..
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4689999999965 344 66 99999999999999987 689999998843
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=3.2e-10 Score=82.57 Aligned_cols=43 Identities=35% Similarity=0.776 Sum_probs=35.9
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHh---cCCCCCcc
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQ---SNANCPLC 172 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~---~~~~CPlC 172 (337)
..+..|+||++.|.+ ..+++ |||.||..||..|+. .+.+||+|
T Consensus 18 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 445789999999876 34566 999999999999998 45689998
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.98 E-value=2.7e-10 Score=90.46 Aligned_cols=48 Identities=25% Similarity=0.712 Sum_probs=40.1
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
...|+||++.|... +..++ |||.||..||..|+..+.+||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 36899999998762 33335 99999999999999998999999998743
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.97 E-value=2.9e-10 Score=91.73 Aligned_cols=48 Identities=29% Similarity=0.701 Sum_probs=40.7
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
...|+||++.|.+ .+..++ |||.||..||..|+..+.+||+||..+..
T Consensus 15 ~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 4689999999865 243346 99999999999999999999999998854
No 36
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.96 E-value=1.1e-10 Score=88.44 Aligned_cols=49 Identities=31% Similarity=0.673 Sum_probs=41.0
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhc-------CCCCCcccccCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS-------NANCPLCRTSISS 178 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-------~~~CPlCR~~l~~ 178 (337)
.....|+||++.|.+. ..++ |||.||..||..|+.. ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4457899999998764 3467 9999999999999976 5679999998865
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.96 E-value=3.5e-10 Score=93.27 Aligned_cols=52 Identities=29% Similarity=0.748 Sum_probs=43.4
Q ss_pred CCCcccccccccccC----ceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCC
Q 042750 127 SFCECAVCLNEFQEN----EKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISST 179 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~ 179 (337)
+...|+||++.|... .....++ |||.||..||++|+..+.+||+||..+...
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 457899999999763 3345666 999999999999999999999999998543
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.94 E-value=4.5e-10 Score=97.30 Aligned_cols=48 Identities=35% Similarity=0.737 Sum_probs=40.2
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhc-CCCCCcccccCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS-NANCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CPlCR~~l~~ 178 (337)
...|+||++.|.. .+..++ |||.||..||..|+.. +.+||+||..+..
T Consensus 54 ~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 4689999999876 344446 9999999999999987 7789999998843
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.94 E-value=4.8e-10 Score=92.65 Aligned_cols=47 Identities=23% Similarity=0.561 Sum_probs=39.9
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCC-CCCcccccCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNA-NCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CPlCR~~l~~ 178 (337)
...|+||++.|.. ...++ |||.||..||..|+..+. +||+||..+..
T Consensus 52 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3689999999975 44567 999999999999998654 89999999855
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=4.8e-10 Score=79.86 Aligned_cols=43 Identities=40% Similarity=0.959 Sum_probs=35.4
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHH---hcCCCCCcc
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWL---QSNANCPLC 172 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl---~~~~~CPlC 172 (337)
.....|+||++.+.+. ..++ |||.||..||..|+ ..+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3457899999999774 3466 99999999999995 456789998
No 41
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.93 E-value=5.6e-10 Score=87.24 Aligned_cols=48 Identities=25% Similarity=0.635 Sum_probs=39.7
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcC--CCCCcccccC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSN--ANCPLCRTSI 176 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CPlCR~~l 176 (337)
..+..|+||++.|.+. ..++.|||.||..||..|+... .+||+||..+
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 4557899999999763 4565599999999999999753 5899999886
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.88 E-value=9.1e-10 Score=88.79 Aligned_cols=46 Identities=33% Similarity=0.783 Sum_probs=38.7
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCC---CCCcccccCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNA---NCPLCRTSISS 178 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~---~CPlCR~~l~~ 178 (337)
..|+||++.|... ..++ |||.||..||..|+..+. +||+||..+..
T Consensus 22 ~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 5899999998764 3456 999999999999998654 89999998754
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.84 E-value=1.7e-09 Score=92.88 Aligned_cols=48 Identities=21% Similarity=0.515 Sum_probs=40.5
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCC-CCCcccccCCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNA-NCPLCRTSISST 179 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CPlCR~~l~~~ 179 (337)
...|+||++.|.. ..+++ |||.||..||..|+.... +||+||..+...
T Consensus 78 ~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3689999999866 34477 999999999999998754 799999998654
No 44
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.81 E-value=2.2e-09 Score=79.04 Aligned_cols=47 Identities=26% Similarity=0.610 Sum_probs=39.5
Q ss_pred CCCcccccccccccCceeEec--CCCCcc-ccHHhHHHHHhcCCCCCcccccCC
Q 042750 127 SFCECAVCLNEFQENEKLRII--PNCGHV-FHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~l--p~C~H~-FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
++.+|.||++.+.+ ...+ | |||. |+..|+..|...+..||+||+.+.
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 34689999998655 3344 8 9999 899999999998899999999884
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.80 E-value=2e-09 Score=88.35 Aligned_cols=49 Identities=31% Similarity=0.649 Sum_probs=40.9
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCC-CCCcccccCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNA-NCPLCRTSISS 178 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CPlCR~~l~~ 178 (337)
.....|+||++.+... ..++ |||.||..||..|+.... +||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 3457899999998763 4566 999999999999998765 89999998854
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.78 E-value=9.3e-10 Score=89.64 Aligned_cols=46 Identities=28% Similarity=0.832 Sum_probs=39.2
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhc-CCCCCcccccCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS-NANCPLCRTSIS 177 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CPlCR~~l~ 177 (337)
+..|+||++.|.. ...++ |||.||..||..|+.. +.+||+||..+.
T Consensus 15 ~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 4689999999875 34567 9999999999999976 668999999884
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.78 E-value=2.7e-09 Score=87.00 Aligned_cols=47 Identities=26% Similarity=0.527 Sum_probs=39.9
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhc-CCCCCcccccCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS-NANCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CPlCR~~l~~ 178 (337)
...|+||++.|.+ ...++ |||.||..||..|+.. +.+||+||..+..
T Consensus 23 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 3689999999865 34466 9999999999999987 7789999998854
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.76 E-value=4.9e-09 Score=81.49 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=42.0
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
.....|+||++.|.+ ..+++ |||.|+..||..|+..+.+||+|+..+.
T Consensus 12 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp CTTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred chheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 345889999999977 45677 9999999999999998899999998874
No 49
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.75 E-value=4e-09 Score=77.45 Aligned_cols=50 Identities=20% Similarity=0.533 Sum_probs=39.7
Q ss_pred CCCCcccccccccccCceeEecCCCCcc-ccHHhHHHHHhcCCCCCcccccCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHV-FHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
.....|.||++.+.+. .+..+| |||. |+..|+..|...+..||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3346899999986442 122347 9998 999999999988889999999884
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.73 E-value=6.1e-09 Score=102.14 Aligned_cols=48 Identities=33% Similarity=0.969 Sum_probs=41.2
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHh-cCCCCCcccccCCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQ-SNANCPLCRTSISST 179 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CPlCR~~l~~~ 179 (337)
..+|+||++.+.. ...+| |||.||..||..|+. .+.+||+||..+...
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3689999999855 56677 999999999999998 678899999988553
No 51
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.73 E-value=6.4e-09 Score=83.45 Aligned_cols=49 Identities=12% Similarity=0.145 Sum_probs=42.5
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
.....|+||++.|.+ ..+++ |||.|+..||..|+..+.+||+|+.++..
T Consensus 27 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 345789999999977 45677 99999999999999988999999988754
No 52
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.72 E-value=2.8e-09 Score=102.52 Aligned_cols=53 Identities=19% Similarity=0.593 Sum_probs=40.8
Q ss_pred CCCCcccccccccccCcee----EecCCCCccccHHhHHHHHhcC-----------CCCCcccccCCC
Q 042750 126 RSFCECAVCLNEFQENEKL----RIIPNCGHVFHIDCIDVWLQSN-----------ANCPLCRTSISS 178 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~----~~lp~C~H~FH~~Ci~~Wl~~~-----------~~CPlCR~~l~~ 178 (337)
....+|+||++.+..+..+ ...+.|+|.||..||.+||++. .+||.||.++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4567899999999873322 2233699999999999999752 359999998853
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.70 E-value=1e-08 Score=81.99 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=42.1
Q ss_pred CCCCcccccccccccCceeEecCCCC-ccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCG-HVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~-H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
..+..|+||++.|.+ ..+++ || |.|+..||..|+..+.+||+||..+..
T Consensus 20 p~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 345789999999977 45577 99 999999999999988899999988853
No 54
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.68 E-value=1.7e-08 Score=77.40 Aligned_cols=54 Identities=20% Similarity=0.468 Sum_probs=40.5
Q ss_pred CCCCcccccccccccCce-eEecCCCCccccHHhHHHHHhc-CCCCCcccccCCCCC
Q 042750 126 RSFCECAVCLNEFQENEK-LRIIPNCGHVFHIDCIDVWLQS-NANCPLCRTSISSTT 180 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~Ci~~Wl~~-~~~CPlCR~~l~~~~ 180 (337)
.++.+|+||++.+...+. +..++ |||.||..|+..|+.. +..||+||+.+....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 445789999999865432 22233 9999999999998753 567999999986543
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.67 E-value=6.7e-09 Score=88.29 Aligned_cols=49 Identities=24% Similarity=0.472 Sum_probs=40.7
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCC-CCCcccccCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNA-NCPLCRTSISS 178 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CPlCR~~l~~ 178 (337)
.....|+||++.|.+. ..++ |||.||..||..|+.... +||+||.++..
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 4457899999999764 4466 999999999999998654 89999998743
No 56
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.65 E-value=5.9e-09 Score=74.54 Aligned_cols=47 Identities=23% Similarity=0.672 Sum_probs=38.4
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISST 179 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~ 179 (337)
.+...|+||++.|... .+++ |||.||..||..| ...||+||..+...
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 3457899999999764 5677 9999999999884 56899999988543
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.62 E-value=8e-09 Score=84.55 Aligned_cols=44 Identities=27% Similarity=0.730 Sum_probs=37.6
Q ss_pred CCcccccccccccCceeEec-CCCCccccHHhHHHHHhcCCCCCcccccCC
Q 042750 128 FCECAVCLNEFQENEKLRII-PNCGHVFHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
...|+||++.|... ..+ + |||.||..||..|+. ..||+||..+.
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 46899999999763 445 6 999999999999987 78999999874
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.61 E-value=1.1e-08 Score=77.25 Aligned_cols=43 Identities=28% Similarity=0.756 Sum_probs=36.7
Q ss_pred CCcccccccccccCceeEecCCCCcc-ccHHhHHHHHhcCCCCCcccccCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHV-FHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
+..|+||++.+.+ ...+| |||. ||..|+..| ..||+||..+..
T Consensus 24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 3579999999765 56678 9999 999999999 789999998853
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=5.9e-08 Score=76.62 Aligned_cols=47 Identities=28% Similarity=0.520 Sum_probs=38.0
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcC------CCCCc--cccc
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSN------ANCPL--CRTS 175 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~------~~CPl--CR~~ 175 (337)
.....|+||++.|.+ ..+++.|||.|+..||..|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 345789999999976 34454599999999999999764 48999 9866
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.51 E-value=5.2e-08 Score=89.80 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=40.5
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhc-CCCCCcccccCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS-NANCPLCRTSIS 177 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CPlCR~~l~ 177 (337)
.....|+||++.|.+ ..+++ |||.||..||..|+.. +.+||+||.++.
T Consensus 206 ~~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 206 PDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CSTTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CcccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 346789999999977 45677 9999999999999986 445999998884
No 61
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.46 E-value=9e-08 Score=75.23 Aligned_cols=48 Identities=23% Similarity=0.646 Sum_probs=39.5
Q ss_pred CCCcccccccccccCceeEecCCCCccccHHhHHHHHhc--------CCCCCc--cccc
Q 042750 127 SFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS--------NANCPL--CRTS 175 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--------~~~CPl--CR~~ 175 (337)
...+|+||++++...+.+...+ |||.||.+|+..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3578999999998776666666 9999999999999863 236999 9877
No 62
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.46 E-value=1e-07 Score=69.45 Aligned_cols=48 Identities=23% Similarity=0.634 Sum_probs=36.3
Q ss_pred CCCcccccccccccCceeEecC-CCCc---cccHHhHHHHHhc--CCCCCcccccCC
Q 042750 127 SFCECAVCLNEFQENEKLRIIP-NCGH---VFHIDCIDVWLQS--NANCPLCRTSIS 177 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp-~C~H---~FH~~Ci~~Wl~~--~~~CPlCR~~l~ 177 (337)
+...|.||+++. ++.+ ++| .|.| .||..||.+|+.. +.+||+|+..+.
T Consensus 5 ~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 446899999983 3334 577 2334 8999999999964 678999998763
No 63
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.45 E-value=7.7e-08 Score=83.43 Aligned_cols=49 Identities=31% Similarity=0.640 Sum_probs=40.6
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcC-CCCCcccccCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSN-ANCPLCRTSISS 178 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CPlCR~~l~~ 178 (337)
.....|+||++.|... ..++ |||.||..||..|+... .+||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3457899999998763 4566 99999999999999764 489999988854
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=1.6e-07 Score=69.89 Aligned_cols=46 Identities=28% Similarity=0.734 Sum_probs=37.8
Q ss_pred CCCCCcccccccccccCceeEecCCCCcc-ccHHhHHHHHhcCCCCCcccccCCC
Q 042750 125 ERSFCECAVCLNEFQENEKLRIIPNCGHV-FHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 125 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
..+...|.||++.+.+ +..+| |+|. |+..|+.. ...||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 3445789999998654 67788 9999 99999984 4789999998855
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=1.2e-07 Score=71.61 Aligned_cols=42 Identities=29% Similarity=0.808 Sum_probs=34.9
Q ss_pred CcccccccccccCceeEecCCCCcc-ccHHhHHHHHhcCCCCCcccccCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHV-FHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
..|+||++.+.+ ...+| |||. ||..|+.. ...||+||..+..
T Consensus 26 ~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 579999999755 55677 9999 99999965 3789999998854
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.32 E-value=2.5e-07 Score=81.70 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=40.8
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcC-CCCCcccccCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSN-ANCPLCRTSISS 178 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CPlCR~~l~~ 178 (337)
.....|+||++.|.+ ..++| |||.|+..||..|+..+ .+||+|+.++..
T Consensus 104 p~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 456889999999976 45567 99999999999999864 469999988743
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.27 E-value=2e-07 Score=71.41 Aligned_cols=42 Identities=31% Similarity=0.758 Sum_probs=36.0
Q ss_pred CcccccccccccCceeEecCCCCcc-ccHHhHHHHHhcCCCCCcccccCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHV-FHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
..|.||++.+.+ ...+| |||. |+..|+..| ..||+||..+..
T Consensus 19 ~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 19 MLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp TBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 579999998755 66788 9999 999999987 489999998855
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.11 E-value=1.4e-06 Score=63.61 Aligned_cols=48 Identities=15% Similarity=0.310 Sum_probs=40.4
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISST 179 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~ 179 (337)
..|+||++.+.+ ..+++.|||+|...||.+|+..+.+||+++.++...
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 679999999975 345523999999999999999888999999888543
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.10 E-value=6.5e-07 Score=86.66 Aligned_cols=43 Identities=33% Similarity=0.828 Sum_probs=37.0
Q ss_pred CCcccccccccccCceeEecCCCCcc-ccHHhHHHHHhcCCCCCcccccCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHV-FHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
+..|+||++.+.. ...+| |||. ||..|+..| ..||+||..+..
T Consensus 295 ~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 4689999999865 56678 9999 999999998 689999998853
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.06 E-value=1.5e-06 Score=80.94 Aligned_cols=49 Identities=29% Similarity=0.596 Sum_probs=39.4
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcC--CCCCc--ccccCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSN--ANCPL--CRTSIS 177 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CPl--CR~~l~ 177 (337)
.....|+||++.|.++ ++... |||.|+..||..|+..+ .+||+ |+..+.
T Consensus 179 ~~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 4457899999999664 44445 99999999999999764 46999 998773
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.91 E-value=9.2e-06 Score=74.73 Aligned_cols=50 Identities=26% Similarity=0.662 Sum_probs=41.2
Q ss_pred CCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCC--CCCcccccCCCC
Q 042750 127 SFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNA--NCPLCRTSISST 179 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~--~CPlCR~~l~~~ 179 (337)
....|.||.+....+... ++|+|.||..|+..|++.+. .||.|+..+...
T Consensus 179 ~i~~C~iC~~iv~~g~~C---~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCEEC---SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCccc---CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 357899999998876433 45999999999999998754 799999988654
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.79 E-value=1.2e-05 Score=64.05 Aligned_cols=46 Identities=30% Similarity=0.634 Sum_probs=37.5
Q ss_pred cccccccccccCceeEecCCCCccccHHhHHHHHhc-CCCCCcccccCCC
Q 042750 130 ECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS-NANCPLCRTSISS 178 (337)
Q Consensus 130 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CPlCR~~l~~ 178 (337)
-|.+|--.+. ...+++| |+|+|+.+|+..|.+. .++||.|+.++..
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4788866653 4688899 9999999999999854 6789999998844
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.34 E-value=0.033 Score=43.76 Aligned_cols=53 Identities=17% Similarity=0.452 Sum_probs=40.6
Q ss_pred CCCCCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCCCC
Q 042750 124 GERSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISSTTT 181 (337)
Q Consensus 124 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~~~ 181 (337)
...+..-|..|+-+... .+ ....|.+|..|+...|.....||+|+.++...-.
T Consensus 24 s~~G~~nCKsCWf~~k~--LV---~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 24 THLGPQFCKSCWFENKG--LV---ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp CCSCCCCCCSSCSCCSS--EE---ECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSC
T ss_pred cccCcccChhhccccCC--ee---eecchhhHHHHHHHHHhhccCCcccCCcCCccee
Confidence 34455779999987543 23 2246999999999999999999999999876543
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.32 E-value=0.067 Score=39.22 Aligned_cols=46 Identities=22% Similarity=0.448 Sum_probs=32.8
Q ss_pred CCCcccccccccccCceeEecCCCCccccHHhHHHHHhcC----CCCCcccccC
Q 042750 127 SFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSN----ANCPLCRTSI 176 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CPlCR~~l 176 (337)
....|.||.+. ++ +..--.|...||..|++..|... -.||.|....
T Consensus 11 ~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34679999753 33 44444699999999999887653 2499997543
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.94 E-value=0.15 Score=39.53 Aligned_cols=34 Identities=12% Similarity=0.354 Sum_probs=24.6
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHH
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVW 162 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 162 (337)
+..|.||++.+.......-+. |+|.|+..|+..|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 357999998753332232355 9999999999984
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=85.77 E-value=0.66 Score=35.68 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=23.4
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHH
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVW 162 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 162 (337)
..+..|.||- .|..++...-- .|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~-~~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCcccCccc-cccccceeccc-cccccccHhhcccc
Confidence 4567899994 33333322111 48999999999996
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=85.05 E-value=0.51 Score=33.70 Aligned_cols=45 Identities=22% Similarity=0.626 Sum_probs=31.1
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhc----CCCCCcccc
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS----NANCPLCRT 174 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CPlCR~ 174 (337)
..+..|.||... + .+..-..|...||..|+..-+.. .-.||.|+.
T Consensus 9 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 445789999873 3 34444468889999999875432 224999965
No 78
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.94 E-value=0.24 Score=35.48 Aligned_cols=49 Identities=22% Similarity=0.497 Sum_probs=33.4
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHh-----cCCCCCcccc
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQ-----SNANCPLCRT 174 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----~~~~CPlCR~ 174 (337)
.+...|+||...+..+...+.--.|..-||..|+..-.. ..-.||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 344679999998865444444446888999999864321 2455999965
No 79
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=83.84 E-value=0.29 Score=43.28 Aligned_cols=47 Identities=34% Similarity=0.519 Sum_probs=32.8
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhc----CCCCCcccccC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS----NANCPLCRTSI 176 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CPlCR~~l 176 (337)
..+..|.+|... ..+.....|...||..|+...+.. .-.||.|+..-
T Consensus 5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 345679999753 335455568999999999876643 23499997643
No 80
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=81.47 E-value=0.36 Score=41.79 Aligned_cols=45 Identities=36% Similarity=0.588 Sum_probs=31.7
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhc----CCCCCcccccC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS----NANCPLCRTSI 176 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CPlCR~~l 176 (337)
+..|.||... ++ +..-..|.-.||..|+..-+.. .-.||.|+..-
T Consensus 4 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4679999854 44 4444468899999998776543 23499998654
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=80.34 E-value=0.49 Score=33.77 Aligned_cols=47 Identities=28% Similarity=0.590 Sum_probs=30.9
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhc----CCCCCcccccC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS----NANCPLCRTSI 176 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CPlCR~~l 176 (337)
..+..|.||... ++ +..-..|...||..|+..-+.. .-.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CC-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 445779999753 33 3333358889999999864433 22499997543
No 82
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=79.78 E-value=0.48 Score=34.99 Aligned_cols=50 Identities=18% Similarity=0.454 Sum_probs=33.8
Q ss_pred CCCcccccccccccCceeEecCCCCccccHHhHHHHHhc----CCCCCcccccCC
Q 042750 127 SFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS----NANCPLCRTSIS 177 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CPlCR~~l~ 177 (337)
....|.||..... ++.++.--.|.-.||..|+..-+.. .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3457999987753 3334444468889999999765432 334999976653
No 83
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=79.09 E-value=0.76 Score=40.21 Aligned_cols=47 Identities=17% Similarity=0.471 Sum_probs=33.4
Q ss_pred CcccccccccccCce---eEecCCCCccccHHhHHH------HHh-----cCCCCCccccc
Q 042750 129 CECAVCLNEFQENEK---LRIIPNCGHVFHIDCIDV------WLQ-----SNANCPLCRTS 175 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~---~~~lp~C~H~FH~~Ci~~------Wl~-----~~~~CPlCR~~ 175 (337)
..|+||...|..++. .+.--.|..-||..|+.. -+. ..-.||.|+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 469999999987762 444446899999999742 111 15679999754
No 84
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=75.64 E-value=1.3 Score=30.05 Aligned_cols=44 Identities=30% Similarity=0.745 Sum_probs=28.3
Q ss_pred cccccccccccCceeEecCCCCccccHHhHHHHHhc----CCCCCcccc
Q 042750 130 ECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS----NANCPLCRT 174 (337)
Q Consensus 130 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CPlCR~ 174 (337)
.|.||...-..+ .+..-..|...||..|++.=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488898653333 34444468999999999753332 223999864
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.19 E-value=0.42 Score=33.47 Aligned_cols=44 Identities=32% Similarity=0.714 Sum_probs=29.2
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhc----CCCCCccc
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS----NANCPLCR 173 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CPlCR 173 (337)
..+..|.||... ++ +..-..|...||..|+..-+.. .-.||.|.
T Consensus 7 ~~~~~C~vC~~~---g~-ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCS---SC-CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCC---Ce-EEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 445789999874 33 3344468899999998864432 12387774
No 86
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.21 E-value=2.8 Score=31.22 Aligned_cols=49 Identities=20% Similarity=0.451 Sum_probs=31.8
Q ss_pred CCCcccccccccccCceeEecCCCCccccHHhHHHHHh-----cCCCCCcccccC
Q 042750 127 SFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQ-----SNANCPLCRTSI 176 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----~~~~CPlCR~~l 176 (337)
....| ||...+..+...+.--.|..-||..|+.---. ..-.||.|+..-
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34567 99888754443444446888899999853211 245699997654
No 87
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=70.23 E-value=4.6 Score=33.81 Aligned_cols=45 Identities=22% Similarity=0.404 Sum_probs=31.4
Q ss_pred CCCCCcccccccccccCceeEecCCCCccccHHhHHHHHh-----------cCCCCCccc
Q 042750 125 ERSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQ-----------SNANCPLCR 173 (337)
Q Consensus 125 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----------~~~~CPlCR 173 (337)
...+..|.||-+. ++ +..--.|-..||..||+.-+. ..-.||+|+
T Consensus 60 Dg~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp TSCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 3456789999864 44 333345889999999997652 123499996
No 88
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=69.96 E-value=3.7 Score=29.98 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=12.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH
Q 042750 37 SFPVIAIAIVGILATGFLLVSYYIF 61 (337)
Q Consensus 37 ~f~ilviiii~il~~~~lLi~~~~~ 61 (337)
.++.++ +++|-.+.+++++.+.+|
T Consensus 6 ~~p~~L-ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 6 RGSMAL-IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp CCSSHH-HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHH-HHHhHHHHHHHHHHHHHH
Confidence 355555 466665555555554443
No 89
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=69.95 E-value=1.2 Score=35.48 Aligned_cols=45 Identities=24% Similarity=0.643 Sum_probs=29.1
Q ss_pred cccccccccccCceeEecCCCCccccHHhHHHHHhc----CCCCCcccc
Q 042750 130 ECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS----NANCPLCRT 174 (337)
Q Consensus 130 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CPlCR~ 174 (337)
.|.||...-.+++.+..--.|...||..|++.-|.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 578887642233344444469999999999765543 224998864
No 90
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=69.61 E-value=0.8 Score=33.12 Aligned_cols=46 Identities=30% Similarity=0.641 Sum_probs=31.0
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhc----CCCCCccccc
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS----NANCPLCRTS 175 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CPlCR~~ 175 (337)
..+..|.||... ++ +..-..|.-.||..|+..-+.. .-.||.|...
T Consensus 6 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 345789999864 33 4444468899999999854432 2239999653
No 91
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=68.32 E-value=7.1 Score=27.35 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042750 43 IAIVGILATGFLLVSYYIFVIKC 65 (337)
Q Consensus 43 iiii~il~~~~lLi~~~~~~~~c 65 (337)
++++++++.+++|+++.+.+.||
T Consensus 14 iIi~svl~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 14 WVLVGVLGGLLLLTILVLAMWKV 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555555555555444444454
No 92
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=68.29 E-value=3.6 Score=44.51 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=40.7
Q ss_pred CCCCcccccccccccCceeEecCCCC-ccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCG-HVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~-H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
-+...|+|-++.+.+ ..++| .| +.|-..+|.+||..+.+||.=|.++..
T Consensus 889 P~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred cHHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 345789999999877 55677 66 689999999999999999999888743
No 93
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=68.16 E-value=1.6 Score=33.46 Aligned_cols=51 Identities=20% Similarity=0.390 Sum_probs=33.1
Q ss_pred CCCCccccccccc-ccCceeEecCCCCccccHHhHHHHHhc--CCCCCcccccC
Q 042750 126 RSFCECAVCLNEF-QENEKLRIIPNCGHVFHIDCIDVWLQS--NANCPLCRTSI 176 (337)
Q Consensus 126 ~~~~~C~ICl~~~-~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CPlCR~~l 176 (337)
..+..|.||...- ...+.+..-..|.-.||..|+..-+.- .-.||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 3457899998753 223345555568889999999753211 22399997654
No 94
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=67.70 E-value=1.5 Score=34.60 Aligned_cols=38 Identities=26% Similarity=0.446 Sum_probs=26.0
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHh
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQ 164 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~ 164 (337)
.++..|.||.+.=... .+..-..|+..||..|+..++.
T Consensus 5 ~~~~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCccc
Confidence 3557899998763222 2233346999999999987764
No 95
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=67.59 E-value=13 Score=28.67 Aligned_cols=51 Identities=20% Similarity=0.432 Sum_probs=34.5
Q ss_pred CCCccccccccccc---CceeEecCCCCccccHHhHHHHH-hcCCCCCcccccCC
Q 042750 127 SFCECAVCLNEFQE---NEKLRIIPNCGHVFHIDCIDVWL-QSNANCPLCRTSIS 177 (337)
Q Consensus 127 ~~~~C~ICl~~~~~---~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CPlCR~~l~ 177 (337)
....|.||-+++-. ++.....-.|+--.|..|.+-=. ..++.||.|++...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 34689999998643 22222222467778999987543 45888999998774
No 96
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=66.87 E-value=2.9 Score=32.27 Aligned_cols=47 Identities=32% Similarity=0.654 Sum_probs=32.0
Q ss_pred CCCCCcccccccccccCceeEecCCCCccccHHhHHHHHhc----CCCCCccccc
Q 042750 125 ERSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS----NANCPLCRTS 175 (337)
Q Consensus 125 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CPlCR~~ 175 (337)
...+..|.||... ++ +..-..|.-.||..|+.+=|.. .-.||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3455789999864 33 4344468889999999765543 2249999754
No 97
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=65.86 E-value=1.3 Score=38.65 Aligned_cols=44 Identities=32% Similarity=0.664 Sum_probs=29.3
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhc----CCCCCccccc
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS----NANCPLCRTS 175 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CPlCR~~ 175 (337)
+..|.+|... ++ +.....|...||..|+..=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3579999854 33 3333358889999999754432 2249999765
No 98
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=65.29 E-value=1.2 Score=31.38 Aligned_cols=46 Identities=30% Similarity=0.709 Sum_probs=30.7
Q ss_pred CCCcccccccccccCceeEecCCCCccccHHhHHHHHhc----CCCCCcccccC
Q 042750 127 SFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS----NANCPLCRTSI 176 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CPlCR~~l 176 (337)
.+..|.||... ++ +..-..|.-.||..|+..-+.. .-.||.|....
T Consensus 4 ~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SS-CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---Cc-EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 34679999874 33 3344468999999999864432 22399986543
No 99
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=65.24 E-value=4.6 Score=29.12 Aligned_cols=34 Identities=24% Similarity=0.637 Sum_probs=25.7
Q ss_pred CCCcccccccccccCceeEecC-CCCccccHHhHH
Q 042750 127 SFCECAVCLNEFQENEKLRIIP-NCGHVFHIDCID 160 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~ 160 (337)
....|.+|...+..+...+.-- .|.--||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3467999999987766665555 688889999974
No 100
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=64.79 E-value=7.4 Score=27.28 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042750 44 AIVGILATGFLLVSYYIFVIKC 65 (337)
Q Consensus 44 iii~il~~~~lLi~~~~~~~~c 65 (337)
+++++++.+++++++...+.||
T Consensus 12 Ii~svl~GLLLL~Lii~~LwK~ 33 (54)
T 2l8s_A 12 ILLSAFAGLLLLMLLILALWKI 33 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555555554444444444
No 101
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=63.72 E-value=2.7 Score=32.79 Aligned_cols=43 Identities=23% Similarity=0.526 Sum_probs=28.3
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhc---CCCCCccc
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS---NANCPLCR 173 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CPlCR 173 (337)
..| ||-.....+..+ .--.|.-.||..|+..=+.. .-.||.|+
T Consensus 29 vrC-iC~~~~~~~~mi-~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~ 74 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMI-CCDKCSVWQHIDCMGIDRQHIPDTYLCERCQ 74 (98)
T ss_dssp CCC-TTSCCSCSSCEE-EBTTTCBEEETTTTTCCTTSCCSSBCCTTTS
T ss_pred EEe-ECCCccCCCcEE-EcCCCCCcCcCcCCCCCccCCCCCEECCCCc
Confidence 457 887766555444 44468999999998653221 23599995
No 102
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=63.05 E-value=7.2 Score=29.31 Aligned_cols=22 Identities=9% Similarity=0.196 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 042750 46 VGILATGFLLVSYYIFVIKCCL 67 (337)
Q Consensus 46 i~il~~~~lLi~~~~~~~~cc~ 67 (337)
+|+++.++++.++++++.+++.
T Consensus 15 ~gvi~gilliGllllliwk~~~ 36 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWKLLI 36 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333333334444443
No 103
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=62.95 E-value=16 Score=24.48 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=10.1
Q ss_pred CChhHHHHHHHHHHHHHH
Q 042750 36 TSFPVIAIAIVGILATGF 53 (337)
Q Consensus 36 ~~f~ilviiii~il~~~~ 53 (337)
...++++.+++|++++++
T Consensus 9 ~~~~~Ia~~vVGvll~vi 26 (44)
T 2jwa_A 9 SPLTSIISAVVGILLVVV 26 (44)
T ss_dssp CSHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHH
Confidence 335666667777543333
No 104
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=62.12 E-value=1.6 Score=37.15 Aligned_cols=48 Identities=19% Similarity=0.477 Sum_probs=31.7
Q ss_pred CCCcccccccccccCceeEecCCCCccccHHhHHHHH-----hcCCCCCccccc
Q 042750 127 SFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWL-----QSNANCPLCRTS 175 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-----~~~~~CPlCR~~ 175 (337)
....| ||......+.....--.|...||..|+..-. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34579 9988765444444444688899999985321 124469999753
No 105
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=61.89 E-value=4.3 Score=28.87 Aligned_cols=51 Identities=24% Similarity=0.529 Sum_probs=33.7
Q ss_pred CCCCccccccccccc-CceeEecCCCCccccHHhHHHHHh-------cCCCCCcccccC
Q 042750 126 RSFCECAVCLNEFQE-NEKLRIIPNCGHVFHIDCIDVWLQ-------SNANCPLCRTSI 176 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~Ci~~Wl~-------~~~~CPlCR~~l 176 (337)
.++..|.||...... +..+..-..|.-.||..|+..-+. ..-.||.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 345789999986532 344555557999999999875331 223499886543
No 106
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.99 E-value=1.5 Score=32.94 Aligned_cols=45 Identities=31% Similarity=0.745 Sum_probs=28.2
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhc-----CCCCCcccc
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS-----NANCPLCRT 174 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CPlCR~ 174 (337)
..|.||...-..+ .+..--.|...||..|++.=|.. .=.||.|..
T Consensus 27 c~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3678887643233 34444468999999999853322 124888864
No 107
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=60.78 E-value=11 Score=24.92 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042750 43 IAIVGILATGFLLVSYYIFVIKC 65 (337)
Q Consensus 43 iiii~il~~~~lLi~~~~~~~~c 65 (337)
++++++++.++++.++...+.||
T Consensus 12 iIi~s~l~GLllL~li~~~LwK~ 34 (42)
T 2k1a_A 12 WVLVGVLGGLLLLTILVLAMWKV 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556555555555444444444
No 108
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=59.58 E-value=12 Score=30.87 Aligned_cols=46 Identities=22% Similarity=0.383 Sum_probs=30.8
Q ss_pred CCCCCcccccccccccCceeEecCCCCccccHHhHHHHH------hc-----CCCCCcccc
Q 042750 125 ERSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWL------QS-----NANCPLCRT 174 (337)
Q Consensus 125 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl------~~-----~~~CPlCR~ 174 (337)
...+..|.||-+. + .+..-..|-..||..||..-+ .. .=.|++|+-
T Consensus 54 Dg~~~~C~vC~dG---G-~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC---S-EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC---C-eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3455789999864 3 343334688999999999752 11 234999953
No 109
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=58.76 E-value=1.7 Score=31.81 Aligned_cols=44 Identities=34% Similarity=0.712 Sum_probs=26.3
Q ss_pred cccccccccccCceeEecCCCCccccHHhHHHHHhc-----CCCCCcccc
Q 042750 130 ECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS-----NANCPLCRT 174 (337)
Q Consensus 130 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CPlCR~ 174 (337)
.|.||...-.. ..+..--.|...||..|++.=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 35566643222 334444468899999999853332 224888864
No 110
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=58.45 E-value=3.5 Score=28.18 Aligned_cols=44 Identities=18% Similarity=0.373 Sum_probs=29.4
Q ss_pred cccccccccccCceeEecC-CCCccccHHhHHHH----HhcCCCCCccc
Q 042750 130 ECAVCLNEFQENEKLRIIP-NCGHVFHIDCIDVW----LQSNANCPLCR 173 (337)
Q Consensus 130 ~C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~W----l~~~~~CPlCR 173 (337)
.|.+|...+..+...+.-- .|.--||..|+.-- ....-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5889988886555444444 48888999997532 12456699885
No 111
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.60 E-value=1.4 Score=34.07 Aligned_cols=49 Identities=27% Similarity=0.478 Sum_probs=32.0
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHhc----CCCCCccccc
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS----NANCPLCRTS 175 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CPlCR~~ 175 (337)
.+...|.||...-..+ .+..--.|...||..|+..=|.. .=.||.|...
T Consensus 14 ~~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3346799998764332 34444469999999999743332 2239999654
No 112
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=57.43 E-value=4.7 Score=29.60 Aligned_cols=47 Identities=21% Similarity=0.468 Sum_probs=30.8
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHH---------hcCCCCCcccccC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWL---------QSNANCPLCRTSI 176 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl---------~~~~~CPlCR~~l 176 (337)
...| ||...+..+..+. --.|..-||..|+..-. ...-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~-Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMIC-CDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEE-CSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEE-eCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 3567 8988875444443 33588899999984211 2356799997543
No 113
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=55.44 E-value=16 Score=28.74 Aligned_cols=33 Identities=27% Similarity=0.606 Sum_probs=23.2
Q ss_pred CCccccccccc-----ccCceeEecCCCCccccHHhHH
Q 042750 128 FCECAVCLNEF-----QENEKLRIIPNCGHVFHIDCID 160 (337)
Q Consensus 128 ~~~C~ICl~~~-----~~~~~~~~lp~C~H~FH~~Ci~ 160 (337)
...|.+|+..- ..++.+..-..|+..||..|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 35799998763 1223454555799999999995
No 114
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=53.83 E-value=2.1 Score=32.04 Aligned_cols=44 Identities=34% Similarity=0.722 Sum_probs=26.1
Q ss_pred cccccccccccCceeEecCCCCccccHHhHHHHHhc----C-CCCCcccc
Q 042750 130 ECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS----N-ANCPLCRT 174 (337)
Q Consensus 130 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~-~~CPlCR~ 174 (337)
.|.||...-.. +.+..--.|...||..|++.-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 35555544222 234444468899999999865433 1 24888875
No 115
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=53.72 E-value=11 Score=27.61 Aligned_cols=25 Identities=12% Similarity=-0.076 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 042750 45 IVGILATGFLLVSYYIFVIKCCLNW 69 (337)
Q Consensus 45 ii~il~~~~lLi~~~~~~~~cc~~~ 69 (337)
++.++..++.++++..+.+.||.+|
T Consensus 10 ~LivlGg~~~lll~~glcI~ccvkc 34 (70)
T 2klu_A 10 ALIVLGGVAGLLLFIGLGIFFSVRS 34 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhHHHHHHHHHHHHHHHhhHH
Confidence 4567778888888888888877754
No 116
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=52.32 E-value=7.8 Score=28.35 Aligned_cols=44 Identities=27% Similarity=0.594 Sum_probs=27.3
Q ss_pred CCCcccccccccccCceeEecCC--CC-ccccHHhHHHHHhc----CCCCCccccc
Q 042750 127 SFCECAVCLNEFQENEKLRIIPN--CG-HVFHIDCIDVWLQS----NANCPLCRTS 175 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CPlCR~~ 175 (337)
....| ||..... ++ ++.--+ |. ..||..|+. |.. .-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 34568 8987642 43 333334 55 689999997 332 2349999654
No 117
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.76 E-value=2.8 Score=32.00 Aligned_cols=49 Identities=20% Similarity=0.426 Sum_probs=33.6
Q ss_pred CCccccccccccc-CceeEecCCCCccccHHhHHHHHh--------cCCCCCcccccC
Q 042750 128 FCECAVCLNEFQE-NEKLRIIPNCGHVFHIDCIDVWLQ--------SNANCPLCRTSI 176 (337)
Q Consensus 128 ~~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~Ci~~Wl~--------~~~~CPlCR~~l 176 (337)
+..|.||...-.. +..+..--.|...||..|+..-|. ..-.|+.|+...
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 4679999876432 234555557899999999986543 123499997655
No 118
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=51.16 E-value=15 Score=26.87 Aligned_cols=49 Identities=18% Similarity=0.407 Sum_probs=31.6
Q ss_pred CCCCccccccccc-ccCceeEecCCCCccccHHhHHHHHhc--CCCCCcccc
Q 042750 126 RSFCECAVCLNEF-QENEKLRIIPNCGHVFHIDCIDVWLQS--NANCPLCRT 174 (337)
Q Consensus 126 ~~~~~C~ICl~~~-~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CPlCR~ 174 (337)
..+..|.||...- ..++.+..--.|.-.||..|+..-..- .=.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4457899998763 233445555579999999998753211 223888854
No 119
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=51.00 E-value=31 Score=22.18 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=10.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHH
Q 042750 37 SFPVIAIAIVGILATGFLLVS 57 (337)
Q Consensus 37 ~f~ilviiii~il~~~~lLi~ 57 (337)
+--.+.-++++.++.+++++.
T Consensus 9 s~GaIAGiVvG~v~gv~li~~ 29 (38)
T 2k1k_A 9 TGGEIVAVIFGLLLGAALLLG 29 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceeeeehHHHHHHHHHHH
Confidence 333444556665554444443
No 120
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=50.96 E-value=8.1 Score=30.42 Aligned_cols=48 Identities=23% Similarity=0.591 Sum_probs=32.8
Q ss_pred CcccccccccccCceeEecC-CCCccccHHhHHHH------H----hcCCCCCcccccC
Q 042750 129 CECAVCLNEFQENEKLRIIP-NCGHVFHIDCIDVW------L----QSNANCPLCRTSI 176 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~W------l----~~~~~CPlCR~~l 176 (337)
..|.||...+......+.-- .|.--||..|+.-- + ...-.||.|+..-
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 57999999986654444443 58888999997421 1 0244599998654
No 121
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=50.71 E-value=3.3 Score=37.39 Aligned_cols=44 Identities=34% Similarity=0.712 Sum_probs=24.7
Q ss_pred cccccccccccCceeEecCCCCccccHHhHHHHHhc-----CCCCCcccc
Q 042750 130 ECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS-----NANCPLCRT 174 (337)
Q Consensus 130 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CPlCR~ 174 (337)
.|.+|...=.. ..+..--.|...||..|++.=|.. .=.||.|+.
T Consensus 176 ~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 47777654222 334444468999999999854432 124999964
No 122
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=50.23 E-value=6.8 Score=30.29 Aligned_cols=44 Identities=27% Similarity=0.594 Sum_probs=27.0
Q ss_pred CCCcccccccccccCceeEecCC--CC-ccccHHhHHHHHhc----CCCCCccccc
Q 042750 127 SFCECAVCLNEFQENEKLRIIPN--CG-HVFHIDCIDVWLQS----NANCPLCRTS 175 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CPlCR~~ 175 (337)
....| ||..... ++ ++.--+ |. ..||..|+. |.. .-.||.|+..
T Consensus 35 e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 34567 9988643 33 322224 54 579999987 322 3349999754
No 123
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=49.86 E-value=8 Score=31.93 Aligned_cols=34 Identities=12% Similarity=0.304 Sum_probs=24.7
Q ss_pred CCCccccccccc-ccCceeEecCCCCccccHHhHH
Q 042750 127 SFCECAVCLNEF-QENEKLRIIPNCGHVFHIDCID 160 (337)
Q Consensus 127 ~~~~C~ICl~~~-~~~~~~~~lp~C~H~FH~~Ci~ 160 (337)
+...|++|...| .....-+.-..|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 457899999999 3433344555699999998844
No 124
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=49.72 E-value=27 Score=26.52 Aligned_cols=39 Identities=15% Similarity=0.401 Sum_probs=29.1
Q ss_pred CCCCcccccccccccCceeEecC-CCCccccHHhHHHHHhc
Q 042750 126 RSFCECAVCLNEFQENEKLRIIP-NCGHVFHIDCIDVWLQS 165 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl~~ 165 (337)
.....|.+|.+-+++..-+. .| .=.|.||..|-+..++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQ-CPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEE-CSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceee-CCCccCCeeeccccHHHHHh
Confidence 44578999999987765552 22 23799999999988865
No 125
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.61 E-value=17 Score=25.56 Aligned_cols=40 Identities=23% Similarity=0.556 Sum_probs=28.4
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
...|+.|-+.+...+..... -+..||.+| ..|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVA--LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEEC--SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEE--CCCeEcccC--------CcccccCCcCC
Confidence 35799999887654333222 578899888 56899988884
No 126
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=48.18 E-value=13 Score=28.35 Aligned_cols=52 Identities=23% Similarity=0.407 Sum_probs=33.4
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHh-------cCCCCCcccccCC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQ-------SNANCPLCRTSIS 177 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-------~~~~CPlCR~~l~ 177 (337)
.....|.+|...|..-..-..--.||++|+..|....+. ....|-.|-..+.
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 344689999999976543333346999999999765321 1234777755543
No 127
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=48.00 E-value=12 Score=27.97 Aligned_cols=34 Identities=29% Similarity=0.636 Sum_probs=24.7
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHH
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDV 161 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~ 161 (337)
...|.+|...|..-..-..--.||.+|+..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 3579999999975443333346999999999654
No 128
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=47.88 E-value=10 Score=28.92 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=25.0
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHH
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVW 162 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 162 (337)
..|.+|...|..-..-..-..||++|+..|...+
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 5799999999754433333469999999996654
No 129
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=47.63 E-value=12 Score=29.74 Aligned_cols=45 Identities=22% Similarity=0.509 Sum_probs=28.3
Q ss_pred CCCCcccccccccccCceeEecC--CCCccccHHhHHHHHhc----CCCCCcccccC
Q 042750 126 RSFCECAVCLNEFQENEKLRIIP--NCGHVFHIDCIDVWLQS----NANCPLCRTSI 176 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl~~----~~~CPlCR~~l 176 (337)
..+..|.+|.+ .++ +..-- .|...||..|+. |.. .-.||.|.-.+
T Consensus 13 ~~~~~C~~C~~---~G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 13 MHEDYCFQCGD---GGE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp SSCSSCTTTCC---CSE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCcCCC---CCc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 44578999983 233 33333 477899999997 433 12388775443
No 130
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.53 E-value=17 Score=25.44 Aligned_cols=40 Identities=20% Similarity=0.480 Sum_probs=29.4
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
..|+.|-+.+...+.+... -+..||.+| ..|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCC
Confidence 5799999998875433322 578899888 578899887754
No 131
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=47.22 E-value=10 Score=30.81 Aligned_cols=34 Identities=21% Similarity=0.548 Sum_probs=24.3
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHH
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDV 161 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~ 161 (337)
...|.+|...|..-..-..--.||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3579999999975433333346999999998543
No 132
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=47.02 E-value=13 Score=27.92 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=25.2
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHH
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVW 162 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 162 (337)
...|.+|...|..-..-..--.||++|+..|....
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 46899999999764433333369999999996543
No 133
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.63 E-value=17 Score=25.54 Aligned_cols=40 Identities=20% Similarity=0.483 Sum_probs=29.2
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
..|+.|-+.+...+.+. . .-+..||..| .+|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~~~~~-~-a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKL-E-YGGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCEE-C-STTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCccCCCccccCccEE-E-ECccccCccc--------CeECCCCCcCCC
Confidence 57999999987644332 2 2678999888 568899888754
No 134
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=45.93 E-value=13 Score=29.44 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=23.3
Q ss_pred Cccccccccccc------CceeEecCCCCccccHHhHHHH
Q 042750 129 CECAVCLNEFQE------NEKLRIIPNCGHVFHIDCIDVW 162 (337)
Q Consensus 129 ~~C~ICl~~~~~------~~~~~~lp~C~H~FH~~Ci~~W 162 (337)
..|.||+..-.. ++.+..-..|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 469999876421 2344444469999999998754
No 135
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=45.58 E-value=7.8 Score=28.68 Aligned_cols=47 Identities=21% Similarity=0.499 Sum_probs=30.0
Q ss_pred CCCcccccccccccCceeEecC--CCCccccHHhHHHHHh---------cCCCCCccccc
Q 042750 127 SFCECAVCLNEFQENEKLRIIP--NCGHVFHIDCIDVWLQ---------SNANCPLCRTS 175 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl~---------~~~~CPlCR~~ 175 (337)
....| ||-.....+..+ .-- .|..-||..|+.---. ..-.||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~MI-~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMI-QCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEE-ECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEE-EECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 34568 898875444433 333 4888999999853211 24459999754
No 136
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=45.43 E-value=2.8 Score=34.13 Aligned_cols=48 Identities=19% Similarity=0.400 Sum_probs=31.6
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCccccc
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTS 175 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~ 175 (337)
...|..|-..|..-..-..-..||.+||..|..........|-.|...
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 357999999986543333334699999999977665556668888544
No 137
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.47 E-value=20 Score=26.17 Aligned_cols=40 Identities=23% Similarity=0.604 Sum_probs=30.8
Q ss_pred CCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCC
Q 042750 127 SFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
....|+-|-+.+..++.+.. -+..||.+| ..|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 34679999999876665543 568899888 67999988875
No 138
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.17 E-value=21 Score=25.08 Aligned_cols=41 Identities=29% Similarity=0.485 Sum_probs=29.5
Q ss_pred CCccccccccccc--CceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 128 FCECAVCLNEFQE--NEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~--~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
...|+-|-+.+.. ++.+. .. -+..||.+| ..|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~-~a-~~~~wH~~C--------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYI-SF-EERQWHNDC--------FNCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCE-EC-SSCEECTTT--------CBCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceE-EE-CCcccCccc--------CEeccCCCcCCC
Confidence 3579999998875 33332 22 678999988 579999888853
No 139
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=43.76 E-value=12 Score=26.74 Aligned_cols=38 Identities=26% Similarity=0.627 Sum_probs=23.0
Q ss_pred cccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 130 ECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 130 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
.|+.|-+.+..++.+.. -+..||.+| ..|-.|+..|..
T Consensus 2 ~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS---LGKDWHRPC--------LKCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGGGEEEE---TTEEEETTT--------CBCTTTCCBCCT
T ss_pred cCCCCCCEEECceEEEE---CCccccCCC--------CCccccCccCCC
Confidence 37777777665544332 366777766 457777766643
No 140
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.32 E-value=18 Score=25.74 Aligned_cols=40 Identities=23% Similarity=0.531 Sum_probs=31.1
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
...|+.|-+.+..++.+. . -+..||.+| ..|-.|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--S-LGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--E-TTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE--E-CCeEeeCCC--------CCCCCCCCccCC
Confidence 357999999988766554 2 578999888 579999988864
No 141
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=43.24 E-value=5.1 Score=29.10 Aligned_cols=47 Identities=19% Similarity=0.574 Sum_probs=29.5
Q ss_pred CCCCcccccccccccCceeEecCCCCccccHHhHHHHHh---cCCCCCcccc
Q 042750 126 RSFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQ---SNANCPLCRT 174 (337)
Q Consensus 126 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~---~~~~CPlCR~ 174 (337)
.+...| ||..... ++..+.--.|..-||..|+..--. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 344678 9988765 333333445888999999864221 2345888864
No 142
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=42.54 E-value=16 Score=26.52 Aligned_cols=32 Identities=22% Similarity=0.483 Sum_probs=23.3
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHH
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCID 160 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~ 160 (337)
..|.+|...|..-..-..--.||.+|+..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 47999999987543333333699999999854
No 143
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=42.30 E-value=18 Score=34.92 Aligned_cols=49 Identities=18% Similarity=0.417 Sum_probs=30.1
Q ss_pred CcccccccccccCceeEecCCCCcc--ccHHhHHHHHhc--CCCCCcccccCCCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHV--FHIDCIDVWLQS--NANCPLCRTSISSTT 180 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~--FH~~Ci~~Wl~~--~~~CPlCR~~l~~~~ 180 (337)
..|++-+..+.. .++-.. |.|. |-..-+...... .-.||+|...+....
T Consensus 250 L~CPlS~~ri~~--PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp SBCTTTSSBCSS--EEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred ecCCCccccccc--cCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCHHH
Confidence 569988777655 366665 9998 443333333222 234999988775443
No 144
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.07 E-value=16 Score=27.35 Aligned_cols=31 Identities=35% Similarity=0.727 Sum_probs=22.2
Q ss_pred CCcccccccccccCceeEecCCCCccccHHh
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDC 158 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~C 158 (337)
...|.+|...|..-..-..--.||.+|+..|
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~C 44 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRC 44 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTT
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhh
Confidence 4679999999965432222336999999888
No 145
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.89 E-value=31 Score=24.75 Aligned_cols=40 Identities=25% Similarity=0.606 Sum_probs=30.2
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
..|+.|-+.+..++.+... -+..||.+| .+|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEY--KGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCEEEC--SSCEEETTT--------CCCSSSCCCCTT
T ss_pred CcCccCCcccccCceEEEE--Ccccccccc--------CchhhCCCccCC
Confidence 5799999998766554322 578899888 579999888754
No 146
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.00 E-value=28 Score=24.78 Aligned_cols=40 Identities=23% Similarity=0.521 Sum_probs=29.0
Q ss_pred Cccccccccccc--CceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 129 CECAVCLNEFQE--NEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 129 ~~C~ICl~~~~~--~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
..|+.|-+.+.. ..... .. -+..||.+| ..|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~g~~~~~-~a-~~~~wH~~C--------F~C~~C~~~L~~ 47 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFI-CF-QDSQWHSEC--------FNCGKCSVSLVG 47 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEE-EE-TTEEEEGGG--------CBCTTTCCBCSS
T ss_pred CCCccCCCcccCCCCceeE-EE-CCcccCccc--------CChhhCCCcCCC
Confidence 579999998875 22332 22 678999998 579999888853
No 147
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.96 E-value=20 Score=25.41 Aligned_cols=41 Identities=24% Similarity=0.559 Sum_probs=30.0
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
...|+-|-+.+...+.+... -+..||..| ..|-.|+..+..
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCC
Confidence 46799999998755544322 577899888 578899888754
No 148
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.42 E-value=24 Score=25.74 Aligned_cols=43 Identities=28% Similarity=0.528 Sum_probs=31.7
Q ss_pred CCCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCCC
Q 042750 127 SFCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISSTT 180 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~~ 180 (337)
....|+.|-+.+...+.+. . -+..||..| ..|-.|+..|....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a-~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--V-NGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--B-TTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEE--E-CCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 3467999999987665553 2 578899988 57889988875543
No 149
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=40.12 E-value=21 Score=34.28 Aligned_cols=48 Identities=17% Similarity=0.335 Sum_probs=30.2
Q ss_pred CcccccccccccCceeEecCCCCcc--ccHHhHHHHHhcC--CCCCcccccCCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHV--FHIDCIDVWLQSN--ANCPLCRTSISST 179 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~--FH~~Ci~~Wl~~~--~~CPlCR~~l~~~ 179 (337)
..|++-+..+.. .++... |.|. |-..=+..+.... -.||+|.+.+...
T Consensus 216 L~CPlS~~ri~~--P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp SBCTTTCSBCSS--EEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeCCCccceecc--CCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH
Confidence 469988777655 366665 9998 5443333333332 3499999887543
No 150
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=39.92 E-value=13 Score=32.99 Aligned_cols=35 Identities=23% Similarity=0.487 Sum_probs=25.7
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHH
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVW 162 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 162 (337)
...|.+|...|..-..-.....||++||..|-..+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 46899999999765433334469999999996543
No 151
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=39.57 E-value=12 Score=32.86 Aligned_cols=34 Identities=29% Similarity=0.482 Sum_probs=24.6
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHH
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDV 161 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~ 161 (337)
...|.+|...|..-..-.....||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4689999999975433333346999999988543
No 152
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=39.37 E-value=42 Score=22.11 Aligned_cols=23 Identities=9% Similarity=0.189 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 042750 44 AIVGILATGFLLVSYYIFVIKCC 66 (337)
Q Consensus 44 iii~il~~~~lLi~~~~~~~~cc 66 (337)
+++|+++.++++-++.+++.|++
T Consensus 12 Iv~gvi~~ivliGl~lLliwk~~ 34 (43)
T 2k9j_B 12 VLLSVMGAILLIGLAALLIWKLL 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454444443333333444444
No 153
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=38.74 E-value=3.2 Score=30.05 Aligned_cols=45 Identities=20% Similarity=0.541 Sum_probs=26.7
Q ss_pred CcccccccccccCceeEec-CCCCccccHHhHHHHH---h-----cCCCCCcccc
Q 042750 129 CECAVCLNEFQENEKLRII-PNCGHVFHIDCIDVWL---Q-----SNANCPLCRT 174 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~Ci~~Wl---~-----~~~~CPlCR~ 174 (337)
..| ||-.....+..+.-- +.|..-||..|+.--- . .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 457 897665555444322 1388789999973210 0 1345999974
No 154
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=38.49 E-value=11 Score=29.85 Aligned_cols=25 Identities=28% Similarity=0.764 Sum_probs=15.6
Q ss_pred CCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 149 NCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 149 ~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
+||+.|. .=+.....||.|+.....
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccC
Confidence 5888881 111234669999886544
No 155
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=38.45 E-value=34 Score=22.79 Aligned_cols=9 Identities=11% Similarity=0.043 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 042750 47 GILATGFLL 55 (337)
Q Consensus 47 ~il~~~~lL 55 (337)
|++++++++
T Consensus 20 Gv~~~~ii~ 28 (44)
T 2ks1_B 20 ALLLLLVVA 28 (44)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444333
No 156
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=38.22 E-value=6.7 Score=37.70 Aligned_cols=49 Identities=16% Similarity=0.331 Sum_probs=0.0
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHh-------cCCCCCcccccC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQ-------SNANCPLCRTSI 176 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-------~~~~CPlCR~~l 176 (337)
...|.+|...|..-..-.....||++||..|-..++. ....|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 3679999999865432222336999999999876642 123477775444
No 157
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=38.22 E-value=22 Score=24.68 Aligned_cols=42 Identities=24% Similarity=0.537 Sum_probs=30.9
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISST 179 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~ 179 (337)
...|+.|-..+...+.+... -+..||..| ..|-.|...+...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~C--------F~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTT--------SSCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCC--------CcccCCCCCCCCC
Confidence 35799999998876654332 577899888 4688998887543
No 158
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=37.90 E-value=61 Score=21.08 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042750 40 VIAIAIVGILATGFLLVSYYIF 61 (337)
Q Consensus 40 ilviiii~il~~~~lLi~~~~~ 61 (337)
.++.+++++++.++..+++..+
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y 32 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISY 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777766655554443
No 159
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=37.79 E-value=65 Score=23.97 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=19.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042750 36 TSFPVIAIAIVGILATGFLLVSYYIFVIKCCL 67 (337)
Q Consensus 36 ~~f~ilviiii~il~~~~lLi~~~~~~~~cc~ 67 (337)
.-+.++..++.|++++.+++++++-+++...-
T Consensus 9 n~~~Iv~gvi~gilliGllllliwk~~~~i~D 40 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALLIWKLLITIHD 40 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555556677777777776666666555543
No 160
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=35.20 E-value=5.6 Score=31.28 Aligned_cols=45 Identities=22% Similarity=0.563 Sum_probs=27.7
Q ss_pred cccccccccccCceeEecCCCCccccHHhHHHHHhc----CCCCCccccc
Q 042750 130 ECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS----NANCPLCRTS 175 (337)
Q Consensus 130 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CPlCR~~ 175 (337)
.|.||...-.. +.+..-..|...||..|++.=+.. .-.||.|+.-
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 46666554322 234444569999999999864432 2248888543
No 161
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=34.83 E-value=29 Score=29.53 Aligned_cols=37 Identities=19% Similarity=0.605 Sum_probs=26.7
Q ss_pred CCCCCCcccccccccccCceeEecC--CCCccccHHhHHHHHh
Q 042750 124 GERSFCECAVCLNEFQENEKLRIIP--NCGHVFHIDCIDVWLQ 164 (337)
Q Consensus 124 ~~~~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl~ 164 (337)
..+.+..|.||-+. ..+..-. .|...|+..||+.++.
T Consensus 75 eDG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 75 DDGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp TTSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 34556789999763 3444443 4888999999999873
No 162
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=32.77 E-value=1.1e+02 Score=20.33 Aligned_cols=11 Identities=36% Similarity=0.785 Sum_probs=4.8
Q ss_pred ChhHHHHHHHH
Q 042750 37 SFPVIAIAIVG 47 (337)
Q Consensus 37 ~f~ilviiii~ 47 (337)
+.+.+...+++
T Consensus 8 ~~~aIA~gVVg 18 (44)
T 2l2t_A 8 RTPLIAAGVIG 18 (44)
T ss_dssp SSHHHHHHHHH
T ss_pred CcceEEEeehH
Confidence 34444444444
No 163
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=32.41 E-value=8.9 Score=26.99 Aligned_cols=42 Identities=29% Similarity=0.612 Sum_probs=25.3
Q ss_pred CCcccccccccccCceeEecCC--CC-ccccHHhHHHHHhc----CCCCCcccc
Q 042750 128 FCECAVCLNEFQENEKLRIIPN--CG-HVFHIDCIDVWLQS----NANCPLCRT 174 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CPlCR~ 174 (337)
...| ||.... .++ ++.--+ |. ..||..|+. |.. .-.||.|+.
T Consensus 10 ~~~C-~C~~~~-~g~-mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS-YGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcC-CCC-EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3457 898763 233 333334 44 679999997 332 234888854
No 164
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=32.19 E-value=10 Score=26.69 Aligned_cols=41 Identities=32% Similarity=0.664 Sum_probs=25.5
Q ss_pred CcccccccccccCceeEecCC--CC-ccccHHhHHHHHhc----CCCCCcccc
Q 042750 129 CECAVCLNEFQENEKLRIIPN--CG-HVFHIDCIDVWLQS----NANCPLCRT 174 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CPlCR~ 174 (337)
..| ||.... .++ ++.--+ |. ..||..|+. |.. .-.||.|+.
T Consensus 10 ~yC-~C~~~~-~g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 10 TYC-LCHQVS-YGE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp EET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred cEE-ECCCCC-CCC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 457 898764 343 433334 55 689999987 332 234998864
No 165
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=32.13 E-value=33 Score=33.27 Aligned_cols=47 Identities=26% Similarity=0.615 Sum_probs=32.2
Q ss_pred CCCCCCcccccccccccCceeEecC--CCCccccHHhHHHHHhc----------CCCCCcccc
Q 042750 124 GERSFCECAVCLNEFQENEKLRIIP--NCGHVFHIDCIDVWLQS----------NANCPLCRT 174 (337)
Q Consensus 124 ~~~~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl~~----------~~~CPlCR~ 174 (337)
....+..|.+|-+. ..+..-- .|...||..||+.++.. .=.|=+|.-
T Consensus 89 ~DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 89 DDGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 34556789999764 3343333 58899999999999721 234888853
No 166
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=31.59 E-value=20 Score=28.33 Aligned_cols=37 Identities=24% Similarity=0.603 Sum_probs=23.6
Q ss_pred cccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccC
Q 042750 130 ECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSI 176 (337)
Q Consensus 130 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l 176 (337)
.|+.|-..+...+.+.. .-+..||..| ..|-.|...|
T Consensus 10 ~C~~C~~~I~~~e~~~~--a~~~~~H~~C--------F~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR--VKDKVYHLEC--------FKCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCCC--CSSCCCCTTT--------CBCTTTCCBC
T ss_pred cccCCCCeecCCceEEE--ECCccccccc--------CccccCCCCC
Confidence 58888777765443321 2467788777 4577777766
No 167
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.54 E-value=36 Score=23.57 Aligned_cols=39 Identities=21% Similarity=0.508 Sum_probs=28.5
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
...|+.|-+.+.. +.+ .. -+..||.+| .+|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GGV--TY-REQPWHKEC--------FVCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCS-SEE--ES-SSSEEETTT--------SBCSSSCCBCTT
T ss_pred CCCCcccCCeecc-ceE--EE-CccccCCCC--------CccCCCCCcCCc
Confidence 3579999998864 332 22 678999888 569999888743
No 168
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=31.01 E-value=27 Score=29.35 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=23.0
Q ss_pred CCCcccccccccccC-ceeEecCCCCccccHHhH
Q 042750 127 SFCECAVCLNEFQEN-EKLRIIPNCGHVFHIDCI 159 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci 159 (337)
++..|++|...|.-- ..-.+-..|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 457899999986421 223334469999999885
No 169
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.70 E-value=39 Score=24.92 Aligned_cols=41 Identities=29% Similarity=0.594 Sum_probs=31.1
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISST 179 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~ 179 (337)
...|+-|-+.+...+.+. . -+..||.+| ..|-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--A-NQQVFHISC--------FRCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--C-SSSEEETTT--------CBCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeEE--E-CCCEECCCC--------CeeCCCCCCCCCC
Confidence 357999999987766542 3 678999988 5688898887543
No 170
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=29.26 E-value=28 Score=22.17 Aligned_cols=10 Identities=30% Similarity=0.647 Sum_probs=5.1
Q ss_pred hHHHHHHHHH
Q 042750 39 PVIAIAIVGI 48 (337)
Q Consensus 39 ~ilviiii~i 48 (337)
+.+...++|+
T Consensus 8 ~sIaagVvgl 17 (35)
T 1iij_A 8 TFIIATVVGV 17 (35)
T ss_dssp HHHHHHHHHH
T ss_pred cEeHHHHHHH
Confidence 4455555563
No 171
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=27.79 E-value=25 Score=25.33 Aligned_cols=47 Identities=23% Similarity=0.446 Sum_probs=30.6
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHH----hcCCCCCccccc
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWL----QSNANCPLCRTS 175 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl----~~~~~CPlCR~~ 175 (337)
...| ||......++..+.--.|..-||..|+..-- ...-.||.|+..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 3568 7988765554344444688889999976431 123459999654
No 172
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=27.77 E-value=14 Score=27.01 Aligned_cols=21 Identities=24% Similarity=0.635 Sum_probs=14.9
Q ss_pred HHHHHhcCCCCCcccccCCCC
Q 042750 159 IDVWLQSNANCPLCRTSISST 179 (337)
Q Consensus 159 i~~Wl~~~~~CPlCR~~l~~~ 179 (337)
++.||..--.||.|+.++...
T Consensus 1 md~~LLeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 1 MDTKLLDILACPICKGPLKLS 21 (69)
T ss_dssp --CCGGGTCCCTTTCCCCEEC
T ss_pred CChHHHhheeCCCCCCcCeEe
Confidence 356777778899999887643
No 173
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.60 E-value=35 Score=24.49 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=28.2
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
...|+-|-+.+.. +.+ . .-+..||.+| .+|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~~~--~-a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VFV--K-LRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-SCE--E-CSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCccccCCCCccC-cEE--E-ECcceeCcCc--------CeeCCCCCCCC
Confidence 4679999998875 322 2 2678999988 46989988774
No 174
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=26.83 E-value=57 Score=24.25 Aligned_cols=38 Identities=18% Similarity=0.457 Sum_probs=20.3
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSI 176 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l 176 (337)
..|+.|-+.+..+..+... -+..||..| .+|-.|+..|
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L 43 (101)
T 2cup_A 6 SGCVECRKPIGADSKEVHY--KNRFWHDTC--------FRCAKCLHPL 43 (101)
T ss_dssp CBCSSSCCBCCSSSCEEEE--TTEEEETTT--------CCCSSSCCCT
T ss_pred CcCcccCCcccCCceEEEE--CccChhhcC--------CcccccCCCC
Confidence 4577777766532222211 355666665 4566666655
No 175
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.82 E-value=51 Score=24.16 Aligned_cols=39 Identities=15% Similarity=0.330 Sum_probs=29.1
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
...|+.|-+.+.. ..+ . .-+..||.+| ..|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~~-~~~--~-a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AVV--K-ARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCS-CCE--E-SSSCEECTTT--------CCCSSSCCCTTT
T ss_pred CCCcccCCCEecc-cEE--E-ECCceECccC--------CEecCCCCCCCC
Confidence 4679999998875 322 2 2678999988 579999888854
No 176
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=26.63 E-value=28 Score=24.68 Aligned_cols=42 Identities=33% Similarity=0.803 Sum_probs=28.6
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHH-hcCCCCCcc
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWL-QSNANCPLC 172 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CPlC 172 (337)
..|--|+..|.... .-.-++|++.|+.+| |..+ ..=.+||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 35999999985432 234567999999999 3333 223469988
No 177
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=26.47 E-value=43 Score=22.91 Aligned_cols=38 Identities=16% Similarity=0.460 Sum_probs=28.3
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
..|+.|-+.+. ++.+ .. -+..||.+| ..|-.|+..+..
T Consensus 6 ~~C~~C~~~I~-~~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GRVV--NA-MGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SCEE--CC-TTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCcccCCEec-ceEE--EE-CccccccCc--------CEECCCCCCCCC
Confidence 57999999887 4332 32 678899888 569999888854
No 178
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.38 E-value=51 Score=23.72 Aligned_cols=39 Identities=23% Similarity=0.455 Sum_probs=29.0
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
...|+-|-+.+. +..+ . .-+..||.+| .+|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~-~~~v--~-a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL--I-FKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCBCTTTCCBCC-SCCC--C-CSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCCccCCCEec-ceEE--E-ECcceeCCCC--------CEeCCCCCccCC
Confidence 467999999887 3333 2 2678899888 579999888864
No 179
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.10 E-value=53 Score=22.72 Aligned_cols=40 Identities=18% Similarity=0.517 Sum_probs=28.7
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISST 179 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~~ 179 (337)
...|+.|-+.+.. +.+. . -+..||.+| ..|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~-~~~~--a-~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIK--A-MNNSWHPEC--------FRCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-CCEE--E-TTEEECTTT--------SBCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-eEEE--E-CcccccccC--------CEeCCCCCcCCCC
Confidence 3579999988863 3332 2 578899888 5799998887543
No 180
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=25.85 E-value=69 Score=22.51 Aligned_cols=40 Identities=23% Similarity=0.513 Sum_probs=28.8
Q ss_pred Cccccccccccc---CceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 129 CECAVCLNEFQE---NEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 129 ~~C~ICl~~~~~---~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
..|+-|-..+.. ...... . -+..||..| ..|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVA-Y-EGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEE-E-TTEEEETTT--------CBCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeEE-E-CcceeCccc--------CEehhcCCCCCC
Confidence 579999998874 222222 2 578899888 579999988854
No 181
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=25.73 E-value=8.2 Score=30.67 Aligned_cols=45 Identities=20% Similarity=0.581 Sum_probs=27.8
Q ss_pred cccccccccccCceeEecCCCCccccHHhHHHHHhc----CCCCCccccc
Q 042750 130 ECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQS----NANCPLCRTS 175 (337)
Q Consensus 130 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CPlCR~~ 175 (337)
.|.||...-..+ .+..--.|...||..|+..=|.. .-.||.|...
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccch
Confidence 577887653333 34444468999999998853322 1238888543
No 182
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=25.54 E-value=21 Score=21.54 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=20.1
Q ss_pred CcccccccccccCceeEecCCCCccccHHhH
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCI 159 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci 159 (337)
..|+.|-...-..+++. .-|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE---ECCeEecccCC
Confidence 46999988876655553 25788999884
No 183
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=25.49 E-value=20 Score=25.88 Aligned_cols=39 Identities=28% Similarity=0.637 Sum_probs=29.5
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
..|+.|-+.+..++.+.. -+..||.+| ..|-.|+..|..
T Consensus 8 ~~C~~C~~~I~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 46 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQC---DGRSFHRCC--------FLCMVCRKNLDS 46 (81)
T ss_dssp CBCSSSCCBCSSTTEEEE---TTEEEESSS--------EECSSSCCEECS
T ss_pred CcCcCcCccccCceeEEe---CCccccccc--------CccCCCCCCCCC
Confidence 579999999876665432 678899888 468889888754
No 184
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=25.48 E-value=99 Score=20.54 Aligned_cols=6 Identities=17% Similarity=0.684 Sum_probs=2.3
Q ss_pred HHHHHH
Q 042750 45 IVGILA 50 (337)
Q Consensus 45 ii~il~ 50 (337)
..+++.
T Consensus 13 A~gVVg 18 (44)
T 2l2t_A 13 AAGVIG 18 (44)
T ss_dssp HHHHHH
T ss_pred EEeehH
Confidence 333333
No 185
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=24.96 E-value=28 Score=27.38 Aligned_cols=12 Identities=25% Similarity=0.944 Sum_probs=10.7
Q ss_pred ccHHhHHHHHhc
Q 042750 154 FHIDCIDVWLQS 165 (337)
Q Consensus 154 FH~~Ci~~Wl~~ 165 (337)
||..|+.+|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999853
No 186
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=24.73 E-value=29 Score=27.30 Aligned_cols=11 Identities=36% Similarity=1.059 Sum_probs=10.3
Q ss_pred ccHHhHHHHHh
Q 042750 154 FHIDCIDVWLQ 164 (337)
Q Consensus 154 FH~~Ci~~Wl~ 164 (337)
||..|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 187
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=24.35 E-value=1.2e+02 Score=17.90 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042750 40 VIAIAIVGILATGFLLV 56 (337)
Q Consensus 40 ilviiii~il~~~~lLi 56 (337)
++..+++.+++++..++
T Consensus 4 iVA~~lLIviav~aaVl 20 (26)
T 3j1r_A 4 VIATLLLILIAVAAAVL 20 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 188
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.05 E-value=63 Score=23.69 Aligned_cols=39 Identities=23% Similarity=0.462 Sum_probs=29.1
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
...|+.|-+.+. ++.+. . -+..||.+| ..|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~-~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLV--A-LGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SCEEE--E-TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCccCCCEec-ceEEE--E-CCccccccC--------CccCCCCCCCCC
Confidence 467999999884 33332 2 678999988 679999988854
No 189
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=24.02 E-value=42 Score=26.69 Aligned_cols=39 Identities=21% Similarity=0.548 Sum_probs=29.7
Q ss_pred CCcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCC
Q 042750 128 FCECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
...|+-|-..+.....+. . -+..||..| ..|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~--a-~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY--A-MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE--E-TTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE--e-CCcEEcccc--------cCcCcCCCccc
Confidence 357999999887543333 2 678999988 67999998885
No 190
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=23.99 E-value=1.6e+02 Score=20.43 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=14.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Q 042750 37 SFPVIAIAIVGILATGFLLVSYYI 60 (337)
Q Consensus 37 ~f~ilviiii~il~~~~lLi~~~~ 60 (337)
-|.+++.++.|+++.+++++++|-
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666655553
No 191
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.74 E-value=59 Score=22.96 Aligned_cols=37 Identities=22% Similarity=0.457 Sum_probs=27.4
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
..|+-|-..+.. ..+ . .-+..||.+| .+|-.|...|.
T Consensus 6 ~~C~~C~~~I~~-~~v--~-a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RVL--E-AGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CCB--C-CSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC-eeE--E-eCCCCCCCCc--------CEeCCCCCCCC
Confidence 579999888765 222 2 3678999888 57889988875
No 192
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=23.65 E-value=17 Score=22.98 Aligned_cols=14 Identities=14% Similarity=0.612 Sum_probs=10.1
Q ss_pred CcccccccccccCc
Q 042750 129 CECAVCLNEFQENE 142 (337)
Q Consensus 129 ~~C~ICl~~~~~~~ 142 (337)
..|+||+.++...+
T Consensus 6 FiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 6 FICPQCMKSLGSAD 19 (34)
T ss_dssp EECTTTCCEESSHH
T ss_pred cCCcHHHHHcCCHH
Confidence 67888888876543
No 193
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=23.27 E-value=16 Score=36.42 Aligned_cols=47 Identities=26% Similarity=0.486 Sum_probs=30.5
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHh-----cCCCCCcccccC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQ-----SNANCPLCRTSI 176 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----~~~~CPlCR~~l 176 (337)
..| ||...+..+...+..-.|.--||..|+.---. ..-.||.|+...
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 456 99887654444444446888899999853211 234699997543
No 194
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=22.98 E-value=14 Score=26.88 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=15.4
Q ss_pred HHHHhcCCCCCcccccCCCC
Q 042750 160 DVWLQSNANCPLCRTSISST 179 (337)
Q Consensus 160 ~~Wl~~~~~CPlCR~~l~~~ 179 (337)
+.||..--.||+|+.++...
T Consensus 4 d~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEEE
T ss_pred CHHHHHHhCCCCCCCcCeEe
Confidence 46777777899999987653
No 195
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.81 E-value=69 Score=22.85 Aligned_cols=40 Identities=23% Similarity=0.494 Sum_probs=28.2
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
..|+.|-..+..++.+.. .-+..||..| ..|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF--YEDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC--CSSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEEE--eCCccccccC--------CeecCCCCccCC
Confidence 479999998874333321 2578899888 568899888753
No 196
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=22.45 E-value=15 Score=26.08 Aligned_cols=44 Identities=27% Similarity=0.572 Sum_probs=25.6
Q ss_pred CCcccccccccccCceeEecCC--CC-ccccHHhHHHHH--hcCCCCCcccc
Q 042750 128 FCECAVCLNEFQENEKLRIIPN--CG-HVFHIDCIDVWL--QSNANCPLCRT 174 (337)
Q Consensus 128 ~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl--~~~~~CPlCR~ 174 (337)
...| ||.... .++ ++.--+ |. ..||..|+.--- ...-.||.|+.
T Consensus 11 ~~yC-~C~~~~-~g~-MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGE-MIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CCC-eeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 3457 898753 343 333334 44 789999987210 11234999864
No 197
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.12 E-value=79 Score=21.69 Aligned_cols=37 Identities=19% Similarity=0.530 Sum_probs=27.4
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
..|+-|-+.+.. +.+. . -+..||.+| ..|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~-~~~~--a-~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS-GGIT--Y-QDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT-TCEE--E-TTEEECTTT--------TBCTTTCCBCT
T ss_pred CCCcccCCEeCc-ceEE--E-CccccccCc--------CEECCCCCCCC
Confidence 579999998864 3332 2 578899888 56899988875
No 198
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=21.78 E-value=49 Score=28.01 Aligned_cols=38 Identities=26% Similarity=0.725 Sum_probs=24.2
Q ss_pred cccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCC
Q 042750 130 ECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSIS 177 (337)
Q Consensus 130 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~ 177 (337)
.|..|-..+...+.+... -++.||..| .+|-.|...|.
T Consensus 71 ~C~~C~~~I~~~e~~i~a--~~~~~H~~C--------F~C~~C~~~L~ 108 (188)
T 1rut_X 71 ACSACGQSIPASELVMRA--QGNVYHLKC--------FTCSTCRNRLV 108 (188)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEECGGG--------CBCTTTCCBCC
T ss_pred ccccCCCccccCcEEEEc--CCCEEeCCC--------CeECCCCCCCC
Confidence 477777776554433222 567788777 46777777664
No 199
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.21 E-value=52 Score=23.53 Aligned_cols=38 Identities=26% Similarity=0.661 Sum_probs=28.1
Q ss_pred CcccccccccccCceeEecCCCCccccHHhHHHHHhcCCCCCcccccCCC
Q 042750 129 CECAVCLNEFQENEKLRIIPNCGHVFHIDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 129 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
..|+.|-+.+. ++.+. .-+..||.+| .+|-.|+..|..
T Consensus 16 ~~C~~C~~~I~-~~~v~---a~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS---ALGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-SCCEE---ETTEEECTTT--------SSCSSSCCCCCS
T ss_pred CcCccccCEec-cceEE---ECCceeCccC--------CccccCCCCCCC
Confidence 47999999887 33332 2678899888 579999888754
No 200
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=20.85 E-value=23 Score=27.14 Aligned_cols=45 Identities=20% Similarity=0.404 Sum_probs=26.0
Q ss_pred CCCcccccccccccCceeEecCCCC---ccccHHhHHHHH--hcCCCCCc-ccc
Q 042750 127 SFCECAVCLNEFQENEKLRIIPNCG---HVFHIDCIDVWL--QSNANCPL-CRT 174 (337)
Q Consensus 127 ~~~~C~ICl~~~~~~~~~~~lp~C~---H~FH~~Ci~~Wl--~~~~~CPl-CR~ 174 (337)
....| ||..... ++ ++.--+|. ..||..|+.--- ...-.||. |+.
T Consensus 25 ~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 34568 9987532 43 33333444 679999986210 11335999 863
No 201
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=20.54 E-value=56 Score=22.41 Aligned_cols=39 Identities=18% Similarity=0.447 Sum_probs=28.0
Q ss_pred cccccccccccCceeEecCCCCcccc--HHhHHHHHhcCCCCCcccccCCC
Q 042750 130 ECAVCLNEFQENEKLRIIPNCGHVFH--IDCIDVWLQSNANCPLCRTSISS 178 (337)
Q Consensus 130 ~C~ICl~~~~~~~~~~~lp~C~H~FH--~~Ci~~Wl~~~~~CPlCR~~l~~ 178 (337)
.|+-|-+.+..++.... . -+..|| .+| .+|-.|+.+|..
T Consensus 4 ~C~~C~~~I~~~~~~v~-a-~~~~wH~~~~C--------F~C~~C~~~L~~ 44 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVT-Y-NNFSWHASTEC--------FLCSCCSKCLIG 44 (65)
T ss_dssp ECTTTSSEECTTSCEEE-E-TTEEEETTTTT--------SBCTTTCCBCTT
T ss_pred CCcCCCCeeccCceEEE-E-CCCccCCCCCC--------EECCCCCCcCCC
Confidence 59999988876433322 2 578899 888 578899888853
Done!