BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042751
(155 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 36.6 bits (83), Expect = 0.064, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 26 SQVAFSFDFEDVDEEEVYVLDRPVPDHSPRSRLLLSSIRKGAQCSADHKNICNGVSANNG 85
SQ+ +FE+ +E+ Y D PV H+ RS + C+ K CNG +G
Sbjct: 78 SQLLAELNFEEDEEDTYYTKDLPV--HACRSYCGIHDPACVVYCNTSKKWFCNGRGNTSG 135
Query: 86 TSLL-HCCKMHCRNILGDKNNCGKCGSKCKFGQLCCNGTCTNVF 128
+ ++ H + C+ + K+ G G C N C NVF
Sbjct: 136 SHIVNHLVRAKCKEVTLHKD--GPLGETV---LECYNCGCRNVF 174
>sp|A3M0D8|YME2_PICST Mitochondrial escape protein 2 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=YME2 PE=3 SV=2
Length = 877
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 25 HSQVAFSFDFEDVDEEEVYVLDR---PVPDHSPRSRLLLSS-IRKGAQCSADHKNICNGV 80
++++ F+ E + EEE+YVL R P+ D P ++ I +G + + KN GV
Sbjct: 212 NTKLKVKFEGEPLTEEELYVLFRRYGPLVDIIPGPESAEATLIYRGLRSAIAAKNCITGV 271
Query: 81 SANNGTSLLH 90
S N G ++LH
Sbjct: 272 SLNKGRTVLH 281
>sp|Q9HB58|SP110_HUMAN Sp110 nuclear body protein OS=Homo sapiens GN=SP110 PE=1 SV=5
Length = 689
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 79 GVSANNGTSLLHCCKMHCRNILGDKNNCGKCGSKCKFGQLCCNGTCTNVFDNEAH 133
G +A N + C M +L KN+ +C C+ GQL C GTC VF + H
Sbjct: 508 GRNAKNWKRNIRCEGMTLGELLKRKNS-DECEVCCQGGQLLCCGTCPRVFHEDCH 561
>sp|Q2K2X3|NADD_RHIEC Probable nicotinate-nucleotide adenylyltransferase OS=Rhizobium
etli (strain CFN 42 / ATCC 51251) GN=nadD PE=3 SV=1
Length = 192
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 26 SQVAFSFDFEDVDEEEVYVL-DRPVPD----HSPRSRLLLSSIRKGAQCSA 71
S++ +FDF +DE++ VL +P P H PRS L ++IR GA A
Sbjct: 140 SKMTRTFDFARIDEDDARVLWKKPAPAWTFIHGPRSGLSSTAIRNGALPGA 190
>sp|O00220|TR10A_HUMAN Tumor necrosis factor receptor superfamily member 10A OS=Homo
sapiens GN=TNFRSF10A PE=1 SV=3
Length = 468
Score = 33.1 bits (74), Expect = 0.74, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 13/100 (13%)
Query: 51 DHSPRSRLLLSSIRKGAQCSADHKNICN----GVSANNGTSLLHCCKMHCRNILGDKNNC 106
+HSP L + ++H CN GV N ++ L C + C D+
Sbjct: 124 EHSPLGELCPPGSHR-----SEHPGACNRCTEGVGYTNASNNLFAC-LPCTACKSDEEER 177
Query: 107 GKCGSKCKFGQLCCNGTCTNVFDNEAH-CGKCNKKCPRGV 145
C + C GT N DN A C KC++ CPRG+
Sbjct: 178 SPCTTTRNTACQCKPGTFRN--DNSAEMCRKCSRGCPRGM 215
>sp|Q58280|Y870_METJA Uncharacterized protein MJ0870 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0870 PE=3 SV=1
Length = 620
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 104 NNCGKCGSKCKFGQLCCNG-TCTNVFDNEAHCGKCNKKCPRGVR 146
N CG+C CK + G T ++ CGKC K CP R
Sbjct: 496 NGCGRCAEVCKVEAIDIRGETSYTNYNVCVGCGKCIKNCPNEAR 539
>sp|B5ZUE6|NADD_RHILW Probable nicotinate-nucleotide adenylyltransferase OS=Rhizobium
leguminosarum bv. trifolii (strain WSM2304) GN=nadD PE=3
SV=1
Length = 192
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 10 AIFSSLAVTLLFMISHSQVAFSFDFEDVDEEEVYVL-DRPVPD----HSPRSRLLLSSIR 64
A+ TL ++ S++ +FDF VDE++ +L +P P H PRS L ++IR
Sbjct: 126 AVIDRPGATLSYL--SSKMTRTFDFARVDEDDARILWKKPAPAWTFIHGPRSGLSSTAIR 183
Query: 65 KGA 67
G+
Sbjct: 184 NGS 186
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 21/110 (19%)
Query: 26 SQVAFSFDFEDVDEEEVYVLDRPVPD------HSPRSRLLLSSIRKGAQCSADHKNICNG 79
SQ+ +FE+ +E+ Y D PV H P + C+ K CNG
Sbjct: 92 SQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVY---------CNTSKKWFCNG 142
Query: 80 VSANNGTSLL-HCCKMHCRNILGDKNNCGKCGSKCKFGQLCCNGTCTNVF 128
+G+ ++ H + C+ + K+ G G C N C NVF
Sbjct: 143 RGNTSGSHIVNHLVRAKCKEVTLHKD--GPLGETV---LECYNCGCRNVF 187
>sp|A6TXE5|MNME_ALKMQ tRNA modification GTPase MnmE OS=Alkaliphilus metalliredigens
(strain QYMF) GN=mnmE PE=3 SV=1
Length = 461
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 2 GTSSRKLKAIFSSLAVTLLFMISHSQVAFSFDFEDVDEEEVYVLDRPVPDHSPRSRLLLS 61
G+ S+++K + L L M++H +V+ F EDVDE + +L + + + ++LL
Sbjct: 157 GSLSKRVKKVKDEL----LDMLAHIEVSIDFSDEDVDEVTLDLLLKQSMEIEKKIKVLLE 212
Query: 62 SIRKGAQCSADHKNICNGVSANNGTSLLHCCKMHCRNIL 100
+ G + G +SLL+ R I+
Sbjct: 213 TADTGKILREGLNTVIVGKPNVGKSSLLNALLKESRAIV 251
>sp|B3PRZ6|NADD_RHIE6 Probable nicotinate-nucleotide adenylyltransferase OS=Rhizobium
etli (strain CIAT 652) GN=nadD PE=3 SV=1
Length = 192
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 26 SQVAFSFDFEDVDEEEVYVLDR---PVPD--HSPRSRLLLSSIRKGAQCSA 71
S++ +FDF VDE++ +L R P H PRS L ++IR GA A
Sbjct: 140 SKMTRTFDFARVDEDDARILWRKSAPAWTFIHGPRSGLSSTAIRNGAVPGA 190
>sp|Q9QZX8|SO1B2_RAT Solute carrier organic anion transporter family member 1B2
OS=Rattus norvegicus GN=Slco1b2 PE=1 SV=2
Length = 687
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 67 AQCSADHKNICNGVSANNGTSLLHCCKMHCRNILGDKNNCGKCGSKCKFGQLCCNGTCTN 126
+ CS D KN + NG + + C C++ GDK + +F C +N
Sbjct: 458 SDCSCD-KNQWEPICGENGVTYISPCLAGCKSFRGDKKP-----NNTEFYDCSC---ISN 508
Query: 127 VFDNEAHCGKCNK-KC 141
+N AH G+C + KC
Sbjct: 509 SGNNSAHLGECPRYKC 524
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 21/110 (19%)
Query: 26 SQVAFSFDFEDVDEEEVYVLDRPVPD------HSPRSRLLLSSIRKGAQCSADHKNICNG 79
SQ+ +FE+ +E+ Y D P+ H P + C+ K CNG
Sbjct: 97 SQLLAELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVY---------CNTSKKWFCNG 147
Query: 80 VSANNGTSLL-HCCKMHCRNILGDKNNCGKCGSKCKFGQLCCNGTCTNVF 128
+G+ ++ H + C+ + K+ G G C N C NVF
Sbjct: 148 RGNTSGSHIVNHLVRAKCKEVTLHKD--GPLGETV---LECYNCGCRNVF 192
>sp|A8EV89|AROC_ARCB4 Chorismate synthase OS=Arcobacter butzleri (strain RM4018) GN=aroC
PE=3 SV=1
Length = 358
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 29 AFSFDFEDVDEEEVYVLDRPVPDHSPRSRL 58
A +FDFE+V + E+Y LD+ V + + L
Sbjct: 162 ASNFDFENVKDSEIYALDKSVEEEQKNAIL 191
>sp|Q2GFP4|RPOC_EHRCR DNA-directed RNA polymerase subunit beta' OS=Ehrlichia chaffeensis
(strain Arkansas) GN=rpoC PE=3 SV=1
Length = 1410
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 112 KCKFGQLCCNGTCTNVFDNEAHCGKCNKKCPRGVRCEFGNCG 153
K + G L C V D+E CGK KK RGV CE CG
Sbjct: 49 KVEKGGLFCPKIFGPVNDDECLCGKYRKKRYRGVVCE--KCG 88
>sp|Q5HC04|RPOC_EHRRW DNA-directed RNA polymerase subunit beta' OS=Ehrlichia ruminantium
(strain Welgevonden) GN=rpoC PE=3 SV=1
Length = 1411
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 112 KCKFGQLCCNGTCTNVFDNEAHCGKCNKKCPRGVRCEFGNCG 153
K + G L C V D+E CGK KK RGV CE CG
Sbjct: 49 KVEKGGLFCPKIFGPVNDDECLCGKYRKKRYRGVICE--KCG 88
>sp|Q5FFD8|RPOC_EHRRG DNA-directed RNA polymerase subunit beta' OS=Ehrlichia ruminantium
(strain Gardel) GN=rpoC PE=3 SV=1
Length = 1411
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 112 KCKFGQLCCNGTCTNVFDNEAHCGKCNKKCPRGVRCEFGNCG 153
K + G L C V D+E CGK KK RGV CE CG
Sbjct: 49 KVEKGGLFCPKIFGPVNDDECLCGKYRKKRYRGVICE--KCG 88
>sp|Q3YST4|RPOC_EHRCJ DNA-directed RNA polymerase subunit beta' OS=Ehrlichia canis
(strain Jake) GN=rpoC PE=3 SV=1
Length = 1410
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 112 KCKFGQLCCNGTCTNVFDNEAHCGKCNKKCPRGVRCEFGNCG 153
K + G L C V D+E CGK KK RGV CE CG
Sbjct: 49 KVEKGGLFCPKIFGPVNDDECLCGKYRKKRYRGVICE--KCG 88
>sp|Q2GJ69|RPOC_ANAPZ DNA-directed RNA polymerase subunit beta' OS=Anaplasma
phagocytophilum (strain HZ) GN=rpoC PE=3 SV=1
Length = 1409
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 112 KCKFGQLCCNGTCTNVFDNEAHCGKCNKKCPRGVRCEFGNCG 153
K + G L C V D+E CGK KK RG+ CE CG
Sbjct: 49 KVEKGGLFCPKIFGPVNDDECLCGKYRKKRYRGIVCE--KCG 88
>sp|Q5PBG3|RPOC_ANAMM DNA-directed RNA polymerase subunit beta' OS=Anaplasma marginale
(strain St. Maries) GN=rpoC PE=3 SV=1
Length = 1415
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 112 KCKFGQLCCNGTCTNVFDNEAHCGKCNKKCPRGVRCEFGNCG 153
K + G L C V D+E CGK KK RG+ CE CG
Sbjct: 49 KVEKGGLFCPKIFGPVNDDECLCGKYRKKRYRGIVCE--KCG 88
>sp|B9KHW2|RPOC_ANAMF DNA-directed RNA polymerase subunit beta' OS=Anaplasma marginale
(strain Florida) GN=rpoC PE=3 SV=1
Length = 1415
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 112 KCKFGQLCCNGTCTNVFDNEAHCGKCNKKCPRGVRCEFGNCG 153
K + G L C V D+E CGK KK RG+ CE CG
Sbjct: 49 KVEKGGLFCPKIFGPVNDDECLCGKYRKKRYRGIVCE--KCG 88
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,128,465
Number of Sequences: 539616
Number of extensions: 2394071
Number of successful extensions: 8995
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 136
Number of HSP's that attempted gapping in prelim test: 8723
Number of HSP's gapped (non-prelim): 341
length of query: 155
length of database: 191,569,459
effective HSP length: 107
effective length of query: 48
effective length of database: 133,830,547
effective search space: 6423866256
effective search space used: 6423866256
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.2 bits)