Query 042751
Match_columns 155
No_of_seqs 142 out of 214
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 09:03:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04885 Stig1: Stigma-specifi 100.0 7.7E-38 1.7E-42 243.9 8.0 97 51-155 40-136 (136)
2 PF04885 Stig1: Stigma-specifi 99.3 5.8E-12 1.3E-16 98.7 7.0 44 83-126 92-135 (136)
3 PF07172 GRP: Glycine rich pro 95.3 0.021 4.5E-07 42.4 3.3 16 9-24 6-21 (95)
4 PF07172 GRP: Glycine rich pro 93.1 0.086 1.9E-06 39.1 2.7 26 1-26 1-27 (95)
5 PF06459 RR_TM4-6: Ryanodine R 87.0 0.44 9.6E-06 41.4 2.2 20 42-61 233-252 (274)
6 PF11359 gpUL132: Glycoprotein 81.5 2.5 5.5E-05 36.3 4.4 16 46-61 106-121 (235)
7 PF15240 Pro-rich: Proline-ric 81.3 1.2 2.7E-05 36.8 2.4 22 11-32 2-23 (179)
8 PF02950 Conotoxin: Conotoxin; 74.1 2.2 4.8E-05 28.9 1.6 9 89-97 62-70 (75)
9 PF15284 PAGK: Phage-encoded v 70.8 4.9 0.00011 28.2 2.8 28 6-33 2-30 (61)
10 PF10731 Anophelin: Thrombin i 70.1 10 0.00022 26.9 4.2 24 7-30 4-27 (65)
11 PRK10893 lipopolysaccharide ex 61.9 12 0.00025 30.6 3.8 20 1-20 1-20 (192)
12 PF15176 LRR19-TM: Leucine-ric 56.5 18 0.00038 27.8 3.7 24 8-31 26-58 (102)
13 PF11131 PhrC_PhrF: Rap-phr ex 56.3 12 0.00025 24.0 2.3 19 6-24 1-19 (37)
14 PF11044 TMEMspv1-c74-12: Plec 55.2 13 0.00029 24.9 2.5 16 7-22 4-19 (49)
15 PF12553 DUF3742: Protein of u 53.6 19 0.00041 24.4 3.1 18 13-30 5-22 (54)
16 PF03896 TRAP_alpha: Transloco 53.5 14 0.00029 32.5 3.0 16 6-21 5-20 (285)
17 PF06357 Omega-toxin: Omega-at 51.2 11 0.00024 24.1 1.5 19 110-128 8-26 (37)
18 PF15240 Pro-rich: Proline-ric 49.6 12 0.00026 31.1 1.9 22 13-35 1-22 (179)
19 PRK05697 flagellar basal body- 48.6 27 0.00057 27.2 3.7 23 39-61 32-58 (137)
20 PRK07021 fliL flagellar basal 44.9 30 0.00064 27.2 3.5 8 54-61 76-83 (162)
21 TIGR02163 napH_ ferredoxin-typ 41.0 12 0.00026 31.3 0.8 40 104-144 204-249 (255)
22 PRK07718 fliL flagellar basal 39.7 33 0.00071 26.5 2.9 6 56-61 62-67 (142)
23 KOG3918 Predicted membrane pro 39.5 37 0.00081 26.8 3.2 16 1-16 1-16 (129)
24 PRK05696 fliL flagellar basal 39.5 27 0.00059 27.6 2.5 7 55-61 85-91 (170)
25 COG4698 Uncharacterized protei 38.5 32 0.0007 29.1 2.9 30 10-39 17-48 (197)
26 PF08105 Antimicrobial10: Metc 38.1 35 0.00076 23.3 2.5 14 10-23 8-21 (52)
27 PF14899 DUF4492: Domain of un 38.0 17 0.00037 25.7 1.0 22 2-23 18-41 (64)
28 PRK09477 napH quinol dehydroge 37.9 20 0.00043 30.3 1.6 41 104-144 211-257 (271)
29 PF12798 Fer4_3: 4Fe-4S bindin 37.7 9.3 0.0002 19.6 -0.3 12 133-144 3-14 (15)
30 COG4726 PilX Tfp pilus assembl 37.5 17 0.00037 30.7 1.1 19 7-25 16-34 (196)
31 PF15069 FAM163: FAM163 family 36.6 1.1E+02 0.0023 24.8 5.4 9 12-20 16-24 (143)
32 PF15145 DUF4577: Domain of un 35.7 42 0.00091 26.5 3.0 19 4-22 61-79 (128)
33 PRK02898 cobalt transport prot 34.2 45 0.00097 25.4 2.8 13 12-24 12-24 (100)
34 TIGR03379 glycerol3P_GlpC glyc 34.0 29 0.00064 30.2 2.1 39 104-144 8-67 (397)
35 COG3771 Predicted membrane pro 32.1 48 0.001 25.2 2.6 18 9-26 2-19 (97)
36 PRK14125 cell division suppres 32.0 64 0.0014 24.0 3.4 7 21-27 24-30 (103)
37 PF04060 FeS: Putative Fe-S cl 31.6 18 0.00038 22.2 0.2 10 103-112 4-13 (35)
38 PF08087 Toxin_18: Conotoxin O 31.0 22 0.00047 21.9 0.6 20 108-127 5-24 (31)
39 PF14608 zf-CCCH_2: Zinc finge 30.6 35 0.00076 18.2 1.3 15 141-155 2-17 (19)
40 PRK13684 Ycf48-like protein; P 29.8 31 0.00067 29.8 1.5 18 3-20 6-23 (334)
41 PRK11168 glpC sn-glycerol-3-ph 29.7 49 0.0011 28.6 2.7 41 104-144 10-69 (396)
42 PF10818 DUF2547: Protein of u 29.6 49 0.0011 24.9 2.3 18 3-20 1-18 (94)
43 PF04706 Dickkopf_N: Dickkopf 29.4 33 0.00072 23.0 1.3 15 139-153 37-51 (52)
44 PRK06231 F0F1 ATP synthase sub 28.7 62 0.0013 26.6 3.0 24 3-26 6-29 (205)
45 PF14060 DUF4252: Domain of un 28.6 30 0.00065 26.1 1.1 7 12-18 5-11 (155)
46 smart00289 WR1 Worm-specific r 28.0 51 0.0011 19.3 1.8 26 126-152 8-36 (38)
47 PF11755 DUF3311: Protein of u 27.0 91 0.002 21.4 3.2 12 29-40 53-64 (66)
48 PF08116 Toxin_29: PhTx neurot 27.0 20 0.00042 22.1 -0.1 14 139-152 8-21 (31)
49 PRK10081 entericidin B membran 26.7 90 0.0019 20.9 3.0 17 6-22 3-19 (48)
50 PF12729 4HB_MCP_1: Four helix 25.9 89 0.0019 22.3 3.1 15 6-20 6-20 (181)
51 PF07127 Nodulin_late: Late no 25.8 69 0.0015 20.9 2.3 17 10-26 7-23 (54)
52 TIGR02494 PFLE_PFLC glycyl-rad 25.8 31 0.00066 28.7 0.8 39 105-144 52-97 (295)
53 PRK09125 DNA ligase; Provision 25.7 63 0.0014 27.7 2.7 16 7-22 3-18 (282)
54 PLN03207 stomagen; Provisional 24.3 1.6E+02 0.0035 22.9 4.3 21 3-23 9-29 (113)
55 PF05702 Herpes_UL49_5: Herpes 24.3 68 0.0015 24.4 2.3 17 6-22 9-25 (98)
56 PLN03222 rapid alkalinization 24.0 63 0.0014 25.4 2.1 6 57-62 68-73 (119)
57 PF01599 Ribosomal_S27: Riboso 23.6 29 0.00062 23.1 0.1 10 101-110 36-45 (47)
58 PF01683 EB: EB module; Inter 23.5 1.1E+02 0.0023 19.3 2.8 39 114-153 2-40 (52)
59 PF09065 Haemadin: Haemadin; 23.3 26 0.00057 20.8 -0.1 15 111-125 6-20 (27)
60 PF11912 DUF3430: Protein of u 23.2 70 0.0015 25.1 2.3 6 93-98 97-102 (212)
61 PRK10772 cell division protein 22.7 93 0.002 23.8 2.8 16 10-25 28-43 (108)
62 COG1998 RPS31 Ribosomal protei 22.2 32 0.00069 23.5 0.2 10 101-110 35-44 (51)
63 PF11714 Inhibitor_I53: Thromb 22.2 88 0.0019 22.8 2.4 15 8-22 3-17 (78)
64 KOG2357 Uncharacterized conser 21.9 89 0.0019 29.4 3.0 10 42-51 29-38 (440)
65 PF11119 DUF2633: Protein of u 21.8 77 0.0017 22.1 2.0 28 7-34 11-39 (59)
66 PF14851 FAM176: FAM176 family 21.8 2.1E+02 0.0045 23.2 4.7 13 10-22 30-42 (153)
67 TIGR02209 ftsL_broad cell divi 21.6 1.2E+02 0.0026 20.6 3.0 9 12-20 9-17 (85)
68 PF00037 Fer4: 4Fe-4S binding 21.6 18 0.0004 20.0 -0.9 13 132-144 9-21 (24)
69 PRK14758 hypothetical protein; 21.4 1.5E+02 0.0032 17.8 2.9 15 8-22 7-21 (27)
70 PF06783 UPF0239: Uncharacteri 21.2 1.2E+02 0.0026 22.6 3.0 13 10-22 30-42 (85)
71 TIGR01165 cbiN cobalt transpor 20.9 99 0.0021 23.2 2.6 13 12-24 13-25 (91)
72 KOG1693 emp24/gp25L/p24 family 20.8 71 0.0015 27.3 2.0 25 7-31 3-27 (209)
73 TIGR03659 IsdE heme ABC transp 20.8 1.2E+02 0.0026 25.0 3.4 17 6-22 2-18 (289)
74 cd00925 Cyt_c_Oxidase_VIa Cyto 20.4 1.7E+02 0.0038 21.5 3.7 13 4-16 15-27 (86)
75 PRK06273 ferredoxin; Provision 20.2 28 0.00062 27.8 -0.5 13 105-117 53-65 (165)
76 COG5510 Predicted small secret 20.2 1.4E+02 0.003 19.8 2.8 15 8-22 4-18 (44)
No 1
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=100.00 E-value=7.7e-38 Score=243.89 Aligned_cols=97 Identities=41% Similarity=1.035 Sum_probs=90.0
Q ss_pred CCCCCCchhhcccccccccCCcccCcccCCCCCCCCcccccccceeeccccCCCCccccCCCCCCCccccCCeecccccC
Q 042751 51 DHSPRSRLLLSSIRKGAQCSADHKNICNGVSANNGTSLLHCCKMHCRNILGDKNNCGKCGSKCKFGQLCCNGTCTNVFDN 130 (155)
Q Consensus 51 ~~~~~sRfLa~~~~~~~~C~k~~~~IC~~~~~~~g~~g~~cC~~~Cvd~~tD~~NCG~Cg~~C~~g~~CCgG~CVdl~tD 130 (155)
...+.+|||++ ++|+++ |+||+..+ +.+++++||+++|||+.+|++|||+||++|++|++||+|+|||+.+|
T Consensus 40 ~~~~~~~~~~~-----~~C~~~-~~iC~~~~--~~~~~~~CC~~~Cvdv~~d~~nCG~Cg~~C~~g~~cC~G~Cvd~~~d 111 (136)
T PF04885_consen 40 VSSRPSRFLAH-----DTCNKD-PWICSAKG--KCSPGPTCCNNKCVDVSSDRNNCGACGNKCPYGQTCCGGQCVDLNSD 111 (136)
T ss_pred ccCCccccccc-----cccCCC-chhhcCCC--CCCCCCcccCCcCCccCCCccccHhhcCCCCCCceecCCEeECCCCC
Confidence 34566899987 799997 79999776 44778999999999999999999999999999999999999999999
Q ss_pred CCcchhcCCCCCCCCccCCceecCC
Q 042751 131 EAHCGKCNKKCPRGVRCEFGNCGYA 155 (155)
Q Consensus 131 ~~nCG~Cg~~C~~G~~C~~G~C~Ya 155 (155)
++|||+||++|+.|+.|++|+|.||
T Consensus 112 ~~~CG~Cg~~C~~G~~C~~G~C~ya 136 (136)
T PF04885_consen 112 PRHCGACGNKCPPGQKCVYGMCGYA 136 (136)
T ss_pred ccccCCCCCcCCCcCCcCCeECCCC
Confidence 9999999999999999999999998
No 2
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=99.30 E-value=5.8e-12 Score=98.71 Aligned_cols=44 Identities=36% Similarity=0.840 Sum_probs=40.7
Q ss_pred CCCCcccccccceeeccccCCCCccccCCCCCCCccccCCeecc
Q 042751 83 NNGTSLLHCCKMHCRNILGDKNNCGKCGSKCKFGQLCCNGTCTN 126 (155)
Q Consensus 83 ~~g~~g~~cC~~~Cvd~~tD~~NCG~Cg~~C~~g~~CCgG~CVd 126 (155)
.+..++++||+|+|||+.+|+.|||+||++|+.|+.|=.|.|..
T Consensus 92 ~~C~~g~~cC~G~Cvd~~~d~~~CG~Cg~~C~~G~~C~~G~C~y 135 (136)
T PF04885_consen 92 NKCPYGQTCCGGQCVDLNSDPRHCGACGNKCPPGQKCVYGMCGY 135 (136)
T ss_pred CCCCCCceecCCEeECCCCCccccCCCCCcCCCcCCcCCeECCC
Confidence 45678899999999999999999999999999999999999864
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=95.26 E-value=0.021 Score=42.42 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 042751 9 KAIFSSLAVTLLFMIS 24 (155)
Q Consensus 9 ~~~~~l~~~~al~~~~ 24 (155)
+|||.||+++.|||+|
T Consensus 6 ~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 6 FLLLGLLLAALLLISS 21 (95)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4455555555555544
No 4
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=93.11 E-value=0.086 Score=39.13 Aligned_cols=26 Identities=12% Similarity=0.082 Sum_probs=17.1
Q ss_pred CC-chhhHHHHHHHHHHHHHHHHHhhc
Q 042751 1 MG-TSSRKLKAIFSSLAVTLLFMISHS 26 (155)
Q Consensus 1 ~~-~~~~~l~~~~~l~~~~al~~~~~~ 26 (155)
|+ |+++.|.++|++|++++.-|++..
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~ 27 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAARE 27 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHH
Confidence 44 455666677777777777666654
No 5
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=86.95 E-value=0.44 Score=41.36 Aligned_cols=20 Identities=25% Similarity=0.394 Sum_probs=10.9
Q ss_pred cccccCCCCCCCCCCchhhc
Q 042751 42 VYVLDRPVPDHSPRSRLLLS 61 (155)
Q Consensus 42 ~~~ld~~~~~~~~~sRfLa~ 61 (155)
.|+|++.+-.--+.=||||=
T Consensus 233 ~~~LeEstgYMep~Lr~lAv 252 (274)
T PF06459_consen 233 YFVLEESTGYMEPALRILAV 252 (274)
T ss_pred EEEEeccchhHHHHHHHHHH
Confidence 38888744332334466654
No 6
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=81.50 E-value=2.5 Score=36.34 Aligned_cols=16 Identities=19% Similarity=0.135 Sum_probs=12.2
Q ss_pred cCCCCCCCCCCchhhc
Q 042751 46 DRPVPDHSPRSRLLLS 61 (155)
Q Consensus 46 d~~~~~~~~~sRfLa~ 61 (155)
.+|.+..+||+||-|-
T Consensus 106 ssl~g~~SRR~~ipa~ 121 (235)
T PF11359_consen 106 SSLFGSGSRRGRIPAG 121 (235)
T ss_pred cccCCCCcccccCCCC
Confidence 4566778888999876
No 7
>PF15240 Pro-rich: Proline-rich
Probab=81.31 E-value=1.2 Score=36.83 Aligned_cols=22 Identities=23% Similarity=0.239 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhhccccccc
Q 042751 11 IFSSLAVTLLFMISHSQVAFSF 32 (155)
Q Consensus 11 ~~~l~~~~al~~~~~~~~~~~~ 32 (155)
|||||.|..|+|+||-.++||-
T Consensus 2 LlVLLSvALLALSSAQ~~dEdv 23 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQSTDEDV 23 (179)
T ss_pred hhHHHHHHHHHhhhcccccccc
Confidence 3444444444556666555544
No 8
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=74.08 E-value=2.2 Score=28.90 Aligned_cols=9 Identities=33% Similarity=1.091 Sum_probs=7.0
Q ss_pred cccccceee
Q 042751 89 LHCCKMHCR 97 (155)
Q Consensus 89 ~~cC~~~Cv 97 (155)
..||++.|.
T Consensus 62 ~~CC~~~C~ 70 (75)
T PF02950_consen 62 SECCSGSCN 70 (75)
T ss_dssp TCBSSSCEE
T ss_pred CCCCCCccC
Confidence 568888876
No 9
>PF15284 PAGK: Phage-encoded virulence factor
Probab=70.83 E-value=4.9 Score=28.22 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=13.8
Q ss_pred hHHH-HHHHHHHHHHHHHHhhcccccccc
Q 042751 6 RKLK-AIFSSLAVTLLFMISHSQVAFSFD 33 (155)
Q Consensus 6 ~~l~-~~~~l~~~~al~~~~~~~~~~~~~ 33 (155)
+|++ +||+|+++|....+|++..+.|+.
T Consensus 2 kk~ksifL~l~~~LsA~~FSasamAa~~~ 30 (61)
T PF15284_consen 2 KKFKSIFLALVFILSAAGFSASAMAADSS 30 (61)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHhhC
Confidence 3444 566666555554444443444443
No 10
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=70.06 E-value=10 Score=26.90 Aligned_cols=24 Identities=25% Similarity=0.050 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccccc
Q 042751 7 KLKAIFSSLAVTLLFMISHSQVAF 30 (155)
Q Consensus 7 ~l~~~~~l~~~~al~~~~~~~~~~ 30 (155)
||++|-+|-++|+.|+-++.+-++
T Consensus 4 Kl~vialLC~aLva~vQ~APQYa~ 27 (65)
T PF10731_consen 4 KLIVIALLCVALVAIVQSAPQYAP 27 (65)
T ss_pred hhhHHHHHHHHHHHHHhcCcccCC
Confidence 444444444444445545544443
No 11
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=61.87 E-value=12 Score=30.61 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=12.5
Q ss_pred CCchhhHHHHHHHHHHHHHH
Q 042751 1 MGTSSRKLKAIFSSLAVTLL 20 (155)
Q Consensus 1 ~~~~~~~l~~~~~l~~~~al 20 (155)
|-|+++.|.+||+|+++..+
T Consensus 1 m~~~~~~~~~il~~~~l~l~ 20 (192)
T PRK10893 1 MSKTRRWVIILLALIALVLI 20 (192)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 66777777766665544444
No 12
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=56.52 E-value=18 Score=27.76 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHH--------HHHh-hcccccc
Q 042751 8 LKAIFSSLAVTLL--------FMIS-HSQVAFS 31 (155)
Q Consensus 8 l~~~~~l~~~~al--------~~~~-~~~~~~~ 31 (155)
..+.++|||++|+ ++++ |.++++.
T Consensus 26 ~al~~SlLIalaaKC~~~~k~~~SY~H~rL~e~ 58 (102)
T PF15176_consen 26 TALVTSLLIALAAKCPVWYKYLASYRHHRLPET 58 (102)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhccccccCCcc
Confidence 3477888888887 3354 6677666
No 13
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=56.31 E-value=12 Score=23.99 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 042751 6 RKLKAIFSSLAVTLLFMIS 24 (155)
Q Consensus 6 ~~l~~~~~l~~~~al~~~~ 24 (155)
+|-+++++-|++.|.|+++
T Consensus 1 LKsKl~l~CLA~aavF~~a 19 (37)
T PF11131_consen 1 LKSKLFLICLAAAAVFTAA 19 (37)
T ss_pred CchhHHHHHHHHHHHHHhh
Confidence 4667888888888887744
No 14
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=55.17 E-value=13 Score=24.91 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 042751 7 KLKAIFSSLAVTLLFM 22 (155)
Q Consensus 7 ~l~~~~~l~~~~al~~ 22 (155)
-|++||+.+|++++|.
T Consensus 4 wlt~iFsvvIil~If~ 19 (49)
T PF11044_consen 4 WLTTIFSVVIILGIFA 19 (49)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4788999999988865
No 15
>PF12553 DUF3742: Protein of unknown function (DUF3742); InterPro: IPR022213 This domain family is found in bacteria, and is approximately 50 amino acids in length. There is a single completely conserved residue Y that may be functionally important.
Probab=53.61 E-value=19 Score=24.38 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhhccccc
Q 042751 13 SSLAVTLLFMISHSQVAF 30 (155)
Q Consensus 13 ~l~~~~al~~~~~~~~~~ 30 (155)
.++++.|+-++.+...++
T Consensus 5 l~f~~iaaw~~~~~~~~~ 22 (54)
T PF12553_consen 5 LVFAAIAAWMARNPDIDE 22 (54)
T ss_pred HHHHHHHHHHHhCCcccc
Confidence 333344443333333333
No 16
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=53.51 E-value=14 Score=32.45 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHHH
Q 042751 6 RKLKAIFSSLAVTLLF 21 (155)
Q Consensus 6 ~~l~~~~~l~~~~al~ 21 (155)
.||.+|+.|++..+|+
T Consensus 5 ~~~~ll~ll~~p~~l~ 20 (285)
T PF03896_consen 5 SRLILLALLVFPATLL 20 (285)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3444444444444443
No 17
>PF06357 Omega-toxin: Omega-atracotoxin; InterPro: IPR009415 This family consists of several Hadronyche versuta (Blue mountains funnel-web spider) specific omega-atracotoxin proteins. Omega-Atracotoxin-Hv1a is an insect-specific neurotoxin whose phylogenetic specificity derives from its ability to antagonise insect, but not vertebrate, voltage-gated calcium channels. Two spatially proximal residues, Asn(27) and Arg(35), form a contiguous molecular surface that is essential for toxin activity. It has been proposed that this surface of the beta-hairpin is a key site for interaction of the toxin with insect calcium channels [].; GO: 0019855 calcium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1AXH_A 1HVW_A.
Probab=51.20 E-value=11 Score=24.05 Aligned_cols=19 Identities=37% Similarity=1.102 Sum_probs=12.1
Q ss_pred CCCCCCCccccCCeecccc
Q 042751 110 GSKCKFGQLCCNGTCTNVF 128 (155)
Q Consensus 110 g~~C~~g~~CCgG~CVdl~ 128 (155)
|.-|++.+.||.|.|..-.
T Consensus 8 gQPCPyne~CCs~sct~k~ 26 (37)
T PF06357_consen 8 GQPCPYNESCCSGSCTYKT 26 (37)
T ss_dssp TSB-SSCCCBSSS-EEEEE
T ss_pred CCcCCCCcccccccceeec
Confidence 5667888888888886543
No 18
>PF15240 Pro-rich: Proline-rich
Probab=49.57 E-value=12 Score=31.12 Aligned_cols=22 Identities=23% Similarity=0.120 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhcccccccccc
Q 042751 13 SSLAVTLLFMISHSQVAFSFDFE 35 (155)
Q Consensus 13 ~l~~~~al~~~~~~~~~~~~~~~ 35 (155)
||||+|+.+|.+-+ .+++.+.|
T Consensus 1 MLlVLLSvALLALS-SAQ~~dEd 22 (179)
T PF15240_consen 1 MLLVLLSVALLALS-SAQSTDED 22 (179)
T ss_pred ChhHHHHHHHHHhh-hccccccc
Confidence 35555555555444 56666544
No 19
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=48.57 E-value=27 Score=27.25 Aligned_cols=23 Identities=9% Similarity=0.085 Sum_probs=12.0
Q ss_pred ccccccccCCC----CCCCCCCchhhc
Q 042751 39 EEEVYVLDRPV----PDHSPRSRLLLS 61 (155)
Q Consensus 39 ~~~~~~ld~~~----~~~~~~sRfLa~ 61 (155)
+...|.|+.+. ...+++.|||.=
T Consensus 32 ~~~y~~l~p~f~vNL~~~~~~~ryLkv 58 (137)
T PRK05697 32 KYAYYGLEPDIVTNYISDGKKLGYVKI 58 (137)
T ss_pred CcEEEeCCCCeEEEcCCCCCCceEEEE
Confidence 44557776332 122335688854
No 20
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=44.92 E-value=30 Score=27.19 Aligned_cols=8 Identities=25% Similarity=0.364 Sum_probs=5.3
Q ss_pred CCCchhhc
Q 042751 54 PRSRLLLS 61 (155)
Q Consensus 54 ~~sRfLa~ 61 (155)
.+.|||.=
T Consensus 76 ~~~rylkv 83 (162)
T PRK07021 76 DADRVLYV 83 (162)
T ss_pred CCceEEEE
Confidence 35788854
No 21
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=41.00 E-value=12 Score=31.34 Aligned_cols=40 Identities=25% Similarity=0.565 Sum_probs=25.0
Q ss_pred CCccccCCCCCCCcccc-----CCe-ecccccCCCcchhcCCCCCCC
Q 042751 104 NNCGKCGSKCKFGQLCC-----NGT-CTNVFDNEAHCGKCNKKCPRG 144 (155)
Q Consensus 104 ~NCG~Cg~~C~~g~~CC-----gG~-CVdl~tD~~nCG~Cg~~C~~G 144 (155)
.+||.|.++|+.+..=- ++. =+ ...+-.+||.|-.+|+.+
T Consensus 204 ~~C~~C~~vCP~~~vl~~~~~~~~~~~i-~~~~C~~Cg~Cv~~CP~~ 249 (255)
T TIGR02163 204 TNCMDCFNVCPEPQVLRMPLKKGGSTLV-LSGDCTLCGRCIDVCHED 249 (255)
T ss_pred eEcCCccCcCCCCceeeccccCCCceEe-ccccccchhHHHHhCCcc
Confidence 36999999999764100 011 11 123455899999999875
No 22
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=39.70 E-value=33 Score=26.53 Aligned_cols=6 Identities=0% Similarity=0.086 Sum_probs=3.8
Q ss_pred Cchhhc
Q 042751 56 SRLLLS 61 (155)
Q Consensus 56 sRfLa~ 61 (155)
.|||.-
T Consensus 62 ~~ylk~ 67 (142)
T PRK07718 62 GNFIRI 67 (142)
T ss_pred CCEEEE
Confidence 588743
No 23
>KOG3918 consensus Predicted membrane protein [Function unknown]
Probab=39.51 E-value=37 Score=26.78 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=13.9
Q ss_pred CCchhhHHHHHHHHHH
Q 042751 1 MGTSSRKLKAIFSSLA 16 (155)
Q Consensus 1 ~~~~~~~l~~~~~l~~ 16 (155)
||.|+.++.++++|+.
T Consensus 1 Mas~l~~~l~~i~lfa 16 (129)
T KOG3918|consen 1 MASTLYRLLTIISLFA 16 (129)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 8999999988888877
No 24
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=39.49 E-value=27 Score=27.59 Aligned_cols=7 Identities=43% Similarity=0.586 Sum_probs=4.9
Q ss_pred CCchhhc
Q 042751 55 RSRLLLS 61 (155)
Q Consensus 55 ~sRfLa~ 61 (155)
+.|||.-
T Consensus 85 ~~ryLkv 91 (170)
T PRK05696 85 RDRLVQI 91 (170)
T ss_pred CceEEEE
Confidence 4788854
No 25
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.55 E-value=32 Score=29.06 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHH--HhhccccccccccCCcc
Q 042751 10 AIFSSLAVTLLFM--ISHSQVAFSFDFEDVDE 39 (155)
Q Consensus 10 ~~~~l~~~~al~~--~~~~~~~~~~~~~~~~~ 39 (155)
++|+|++++|+++ ...+|-|+...++|..+
T Consensus 17 iLLAln~l~~~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 17 ILLALNTLLAVLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred HHHHHHHHHHHHhheeeccCCCCCchhhccCc
Confidence 4455555555533 33566665555555444
No 26
>PF08105 Antimicrobial10: Metchnikowin family; InterPro: IPR012513 This family consists of the metchnikowin family of antimicrobial peptides from Drosophila. metchnikowin is a proline-rich peptide whose expression is immune-inducible. Induction of the metchnikowin gene expression can be mediated either by the TOLL pathway or by the imd gene product. The metchnikowin peptide is unique among the Drosophila antimicrobial peptides in that it is active against both bacteria and fungi [].
Probab=38.11 E-value=35 Score=23.26 Aligned_cols=14 Identities=14% Similarity=0.036 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHH
Q 042751 10 AIFSSLAVTLLFMI 23 (155)
Q Consensus 10 ~~~~l~~~~al~~~ 23 (155)
|+|.||.+|++..+
T Consensus 8 i~l~lL~ll~~~~~ 21 (52)
T PF08105_consen 8 IFLALLGLLALAGS 21 (52)
T ss_pred HHHHHHHHHHhccc
Confidence 56666666666443
No 27
>PF14899 DUF4492: Domain of unknown function (DUF4492)
Probab=38.02 E-value=17 Score=25.71 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=11.1
Q ss_pred CchhhHHHH--HHHHHHHHHHHHH
Q 042751 2 GTSSRKLKA--IFSSLAVTLLFMI 23 (155)
Q Consensus 2 ~~~~~~l~~--~~~l~~~~al~~~ 23 (155)
|+|+-++.+ +|+++++|=+|+.
T Consensus 18 GktLW~IIliKLfImF~vLK~FfF 41 (64)
T PF14899_consen 18 GKTLWLIILIKLFIMFAVLKLFFF 41 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Confidence 455555443 3455555555553
No 28
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=37.92 E-value=20 Score=30.28 Aligned_cols=41 Identities=22% Similarity=0.492 Sum_probs=24.8
Q ss_pred CCccccCCCCCCCcccc---CCeec---ccccCCCcchhcCCCCCCC
Q 042751 104 NNCGKCGSKCKFGQLCC---NGTCT---NVFDNEAHCGKCNKKCPRG 144 (155)
Q Consensus 104 ~NCG~Cg~~C~~g~~CC---gG~CV---dl~tD~~nCG~Cg~~C~~G 144 (155)
.+||.|.++|+.+..=- .+.=. -...+-.+||.|-.+|+.+
T Consensus 211 ~~C~~C~~~CP~~~i~~~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~ 257 (271)
T PRK09477 211 TRCMDCFHVCPEPQVLRPPLKGKQSPSQVTSGDCITCGRCIDVCSED 257 (271)
T ss_pred cccCCcCCcCCCcceecccccCCCccceeCcccCcChhHHHhhcCcc
Confidence 36999999998764321 01000 0113345799999999875
No 29
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=37.70 E-value=9.3 Score=19.60 Aligned_cols=12 Identities=50% Similarity=1.403 Sum_probs=7.1
Q ss_pred cchhcCCCCCCC
Q 042751 133 HCGKCNKKCPRG 144 (155)
Q Consensus 133 nCG~Cg~~C~~G 144 (155)
+||.|..+|+.+
T Consensus 3 ~C~~C~~~Cp~~ 14 (15)
T PF12798_consen 3 GCGACVEVCPTG 14 (15)
T ss_pred CchHHHHHhcCC
Confidence 456666666644
No 30
>COG4726 PilX Tfp pilus assembly protein PilX [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=37.47 E-value=17 Score=30.70 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 042751 7 KLKAIFSSLAVTLLFMISH 25 (155)
Q Consensus 7 ~l~~~~~l~~~~al~~~~~ 25 (155)
-|++.|++|+||+|+.++.
T Consensus 16 ~LivvL~~LvvltLl~l~~ 34 (196)
T COG4726 16 ALIVVLMVLVVLTLLGLAA 34 (196)
T ss_pred EeHHHHHHHHHHHHHHHHH
Confidence 4678888888888866443
No 31
>PF15069 FAM163: FAM163 family
Probab=36.63 E-value=1.1e+02 Score=24.80 Aligned_cols=9 Identities=11% Similarity=0.143 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 042751 12 FSSLAVTLL 20 (155)
Q Consensus 12 ~~l~~~~al 20 (155)
+|||.+.|+
T Consensus 16 VILLcIIaV 24 (143)
T PF15069_consen 16 VILLCIIAV 24 (143)
T ss_pred HHHHHHHHH
Confidence 333434443
No 32
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=35.68 E-value=42 Score=26.54 Aligned_cols=19 Identities=16% Similarity=-0.048 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 042751 4 SSRKLKAIFSSLAVTLLFM 22 (155)
Q Consensus 4 ~~~~l~~~~~l~~~~al~~ 22 (155)
.+|.+.+|++|.++|||+.
T Consensus 61 ~lffvglii~LivSLaLVs 79 (128)
T PF15145_consen 61 SLFFVGLIIVLIVSLALVS 79 (128)
T ss_pred eehHHHHHHHHHHHHHHHH
Confidence 4666778889999999943
No 33
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=34.20 E-value=45 Score=25.40 Aligned_cols=13 Identities=46% Similarity=0.447 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHh
Q 042751 12 FSSLAVTLLFMIS 24 (155)
Q Consensus 12 ~~l~~~~al~~~~ 24 (155)
.++|+++.||+..
T Consensus 12 vi~l~~~pl~~~~ 24 (100)
T PRK02898 12 VILLAVLPLFIYS 24 (100)
T ss_pred HHHHHHHHHHhhc
Confidence 3344444444433
No 34
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=33.98 E-value=29 Score=30.20 Aligned_cols=39 Identities=21% Similarity=0.569 Sum_probs=25.2
Q ss_pred CCccccCCCCCCCccccCCe------------ec---------ccccCCCcchhcCCCCCCC
Q 042751 104 NNCGKCGSKCKFGQLCCNGT------------CT---------NVFDNEAHCGKCNKKCPRG 144 (155)
Q Consensus 104 ~NCG~Cg~~C~~g~~CCgG~------------CV---------dl~tD~~nCG~Cg~~C~~G 144 (155)
.+||.|-++|+..+. .+. =. +....-..||.|..+||.|
T Consensus 8 i~Cg~C~~~Cp~~~~--~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~C~~C~~~CP~~ 67 (397)
T TIGR03379 8 IKCTVCTVYCPVAKA--NPLYPGPKQAGPDGERLRLKSAELYDEALKYCTNCKRCEVACPSD 67 (397)
T ss_pred CCCCCCcccCcCccc--cCCccCcccCCcHHHHHhcccchhcccccccCcCcCccchhcCCC
Confidence 479999999997644 110 00 1112234699999999986
No 35
>COG3771 Predicted membrane protein [Function unknown]
Probab=32.06 E-value=48 Score=25.17 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 042751 9 KAIFSSLAVTLLFMISHS 26 (155)
Q Consensus 9 ~~~~~l~~~~al~~~~~~ 26 (155)
+-||.+++++|+|+++.+
T Consensus 2 Kyil~~vlvlaifliavt 19 (97)
T COG3771 2 KYILIFVLVLAIFLIAVT 19 (97)
T ss_pred hhHHHHHHHHHHHHHHhh
Confidence 346778889999887755
No 36
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=31.99 E-value=64 Score=24.01 Aligned_cols=7 Identities=14% Similarity=0.358 Sum_probs=3.0
Q ss_pred HHHhhcc
Q 042751 21 FMISHSQ 27 (155)
Q Consensus 21 ~~~~~~~ 27 (155)
++.++.+
T Consensus 24 ~~~~~~~ 30 (103)
T PRK14125 24 FVYATVP 30 (103)
T ss_pred HHHcccc
Confidence 4344444
No 37
>PF04060 FeS: Putative Fe-S cluster; InterPro: IPR007202 These proteins contain a domain with four conserved cysteines that probably form an Fe-S redox cluster.; GO: 0051536 iron-sulfur cluster binding; PDB: 2YCL_A 4DJF_E 4DJD_C 4DJE_C.
Probab=31.59 E-value=18 Score=22.16 Aligned_cols=10 Identities=50% Similarity=1.215 Sum_probs=3.8
Q ss_pred CCCccccCCC
Q 042751 103 KNNCGKCGSK 112 (155)
Q Consensus 103 ~~NCG~Cg~~ 112 (155)
..|||+||-.
T Consensus 4 ~~nCg~CG~~ 13 (35)
T PF04060_consen 4 GTNCGACGYP 13 (35)
T ss_dssp S----TTSSS
T ss_pred CCcCCCCCCc
Confidence 3578887754
No 38
>PF08087 Toxin_18: Conotoxin O-superfamily; InterPro: IPR012623 This family consists of members of the conotoxin O-superfamily. The O-superfamily of conotoxins consists of 3 groups of Conus peptides that belong to the same structural group. These 3 groups differ in their pharmacological properties: the w-conotoxins which inhibit calcium channels, the delta-conotoxins which slow down the inactivation rate of voltage -sensitive sodium channels and the muO-conotoxins block the voltage sensitive sodium currents [].
Probab=31.05 E-value=22 Score=21.88 Aligned_cols=20 Identities=35% Similarity=1.124 Sum_probs=15.4
Q ss_pred ccCCCCCCCccccCCeeccc
Q 042751 108 KCGSKCKFGQLCCNGTCTNV 127 (155)
Q Consensus 108 ~Cg~~C~~g~~CCgG~CVdl 127 (155)
-=|..|++...||.|.|...
T Consensus 5 etGrnC~~~~ecCSGAcSa~ 24 (31)
T PF08087_consen 5 ETGRNCKYSYECCSGACSAA 24 (31)
T ss_pred ccCcccccchhhhcccchHH
Confidence 34678899999999988643
No 39
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=30.62 E-value=35 Score=18.22 Aligned_cols=15 Identities=40% Similarity=1.057 Sum_probs=10.0
Q ss_pred CCCCCccCCc-eecCC
Q 042751 141 CPRGVRCEFG-NCGYA 155 (155)
Q Consensus 141 C~~G~~C~~G-~C~Ya 155 (155)
|..|..|.+| .|.|+
T Consensus 2 Ck~~~~C~~~~~C~f~ 17 (19)
T PF14608_consen 2 CKFGPNCTNGDNCPFS 17 (19)
T ss_pred CcCcCCCCCCCcCccC
Confidence 6666667777 77663
No 40
>PRK13684 Ycf48-like protein; Provisional
Probab=29.78 E-value=31 Score=29.77 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=10.6
Q ss_pred chhhHHHHHHHHHHHHHH
Q 042751 3 TSSRKLKAIFSSLAVTLL 20 (155)
Q Consensus 3 ~~~~~l~~~~~l~~~~al 20 (155)
|+++.|.++|.|+++||.
T Consensus 6 ~~~~~~~~~~~~~~~~~~ 23 (334)
T PRK13684 6 KSLKNLLLLLALLLVLSG 23 (334)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 456666666665555554
No 41
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=29.68 E-value=49 Score=28.59 Aligned_cols=41 Identities=20% Similarity=0.616 Sum_probs=26.2
Q ss_pred CCccccCCCCCCCccc---cCCe----------------ecccccCCCcchhcCCCCCCC
Q 042751 104 NNCGKCGSKCKFGQLC---CNGT----------------CTNVFDNEAHCGKCNKKCPRG 144 (155)
Q Consensus 104 ~NCG~Cg~~C~~g~~C---CgG~----------------CVdl~tD~~nCG~Cg~~C~~G 144 (155)
.+||.|-++|+..+.= -+.. -......-.+||.|..+||.+
T Consensus 10 i~Cg~C~~~CP~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~ 69 (396)
T PRK11168 10 IKCTVCTTACPVARVNPLYPGPKQAGPDGERLRLKDGALYDESLKYCSNCKRCEVACPSG 69 (396)
T ss_pred CCCCCCCccCCCcccCCCCCChhhhccHHHHHhccchhhcCCCCCcCcCcCccCcccCCC
Confidence 4799999999987530 0001 111223445799999999976
No 42
>PF10818 DUF2547: Protein of unknown function (DUF2547); InterPro: IPR020508 This entry contains proteins with no known function.
Probab=29.60 E-value=49 Score=24.90 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=14.6
Q ss_pred chhhHHHHHHHHHHHHHH
Q 042751 3 TSSRKLKAIFSSLAVTLL 20 (155)
Q Consensus 3 ~~~~~l~~~~~l~~~~al 20 (155)
|+.|.--++|+|++++||
T Consensus 1 K~~FWSQLLlsmiAIFAL 18 (94)
T PF10818_consen 1 KHPFWSQLLLSMIAIFAL 18 (94)
T ss_pred CCccHHHHHHHHHHHHHc
Confidence 455666789999999999
No 43
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=29.40 E-value=33 Score=22.98 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=8.6
Q ss_pred CCCCCCCccCCceec
Q 042751 139 KKCPRGVRCEFGNCG 153 (155)
Q Consensus 139 ~~C~~G~~C~~G~C~ 153 (155)
..|-+|+.|++|.|.
T Consensus 37 ~~CC~g~~CvnG~C~ 51 (52)
T PF04706_consen 37 AMCCPGNLCVNGVCT 51 (52)
T ss_pred cccCCCCeeeCCEec
Confidence 344456666666663
No 44
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=28.66 E-value=62 Score=26.56 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=18.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhc
Q 042751 3 TSSRKLKAIFSSLAVTLLFMISHS 26 (155)
Q Consensus 3 ~~~~~l~~~~~l~~~~al~~~~~~ 26 (155)
|-.+|+.++.++++++++|++|-|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~ 29 (205)
T PRK06231 6 TRVFKLLLLSFSFLIISLFLVSCT 29 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 446778888888888888887755
No 45
>PF14060 DUF4252: Domain of unknown function (DUF4252)
Probab=28.61 E-value=30 Score=26.07 Aligned_cols=7 Identities=14% Similarity=0.069 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 042751 12 FSSLAVT 18 (155)
Q Consensus 12 ~~l~~~~ 18 (155)
|++++++
T Consensus 5 ~~l~l~~ 11 (155)
T PF14060_consen 5 LILLLLL 11 (155)
T ss_pred HHHHHHH
Confidence 3333333
No 46
>smart00289 WR1 Worm-specific repeat type 1. Worm-specific repeat type 1. Cysteine-rich domain apparently unique (so far) to C. elegans. Often appears with KU domains. About 3 dozen worm proteins contain this domain.
Probab=27.99 E-value=51 Score=19.27 Aligned_cols=26 Identities=31% Similarity=0.816 Sum_probs=18.1
Q ss_pred ccccCCCcchhcCCCCCCCCccCC---cee
Q 042751 126 NVFDNEAHCGKCNKKCPRGVRCEF---GNC 152 (155)
Q Consensus 126 dl~tD~~nCG~Cg~~C~~G~~C~~---G~C 152 (155)
.....+..|-. ...|+.|..|.+ ++|
T Consensus 8 ~~~~~~~~C~~-~~~CP~g~~C~~~~~~~C 36 (38)
T smart00289 8 DLGGSPVRCSP-NGSCPSGYSCQNSKQGIC 36 (38)
T ss_pred cCCCCCeECCC-CCCCCCCCEEecCCCccc
Confidence 44555666666 788888888887 655
No 47
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=26.96 E-value=91 Score=21.43 Aligned_cols=12 Identities=8% Similarity=-0.169 Sum_probs=4.6
Q ss_pred cccccccCCccc
Q 042751 29 AFSFDFEDVDEE 40 (155)
Q Consensus 29 ~~~~~~~~~~~~ 40 (155)
+++.+..++|++
T Consensus 53 ~~~~~~~~~~g~ 64 (66)
T PF11755_consen 53 DEDRRAAREEGE 64 (66)
T ss_pred ccccchhccccC
Confidence 333333344443
No 48
>PF08116 Toxin_29: PhTx neurotoxin family; InterPro: IPR012634 This family consists of PhTx insecticidal neurotoxins that are found in the venom of Phoneutria nigriventer (Brazilian armed spider). The venom of the P. nigrivente contains numerous neurotoxic polypeptides of 30-140 amino acids, which exert a range of biological effects. While some of these neurotoxins are lethal to mice after intracerebroventricular injections, others are extremely toxic to insects of the orders Diptera and Dictyoptera but had much weaker toxic effects on mice [].; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=26.95 E-value=20 Score=22.10 Aligned_cols=14 Identities=29% Similarity=0.869 Sum_probs=6.6
Q ss_pred CCCCCCCccCCcee
Q 042751 139 KKCPRGVRCEFGNC 152 (155)
Q Consensus 139 ~~C~~G~~C~~G~C 152 (155)
..|.+...|++|.|
T Consensus 8 qQCtSDgqCC~G~C 21 (31)
T PF08116_consen 8 QQCTSDGQCCNGRC 21 (31)
T ss_pred cccCcCCceecchh
Confidence 34444444555544
No 49
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=26.73 E-value=90 Score=20.95 Aligned_cols=17 Identities=24% Similarity=0.133 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 042751 6 RKLKAIFSSLAVTLLFM 22 (155)
Q Consensus 6 ~~l~~~~~l~~~~al~~ 22 (155)
+|++.++++++++++++
T Consensus 3 Kk~i~~i~~~l~~~~~l 19 (48)
T PRK10081 3 KKTIAAIFSVLVLSTVL 19 (48)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444434444444433
No 50
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=25.93 E-value=89 Score=22.28 Aligned_cols=15 Identities=33% Similarity=0.335 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHH
Q 042751 6 RKLKAIFSSLAVTLL 20 (155)
Q Consensus 6 ~~l~~~~~l~~~~al 20 (155)
.||.+.|++++++.+
T Consensus 6 ~KL~~~f~~~~~l~~ 20 (181)
T PF12729_consen 6 TKLILGFGLIILLLL 20 (181)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345544444444444
No 51
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=25.83 E-value=69 Score=20.89 Aligned_cols=17 Identities=12% Similarity=0.409 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhhc
Q 042751 10 AIFSSLAVTLLFMISHS 26 (155)
Q Consensus 10 ~~~~l~~~~al~~~~~~ 26 (155)
++.+|.+.+.||++++.
T Consensus 7 FvY~mIiflslflv~~~ 23 (54)
T PF07127_consen 7 FVYAMIIFLSLFLVVTN 23 (54)
T ss_pred hHHHHHHHHHHHHhhcc
Confidence 34444445555555443
No 52
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=25.76 E-value=31 Score=28.68 Aligned_cols=39 Identities=38% Similarity=1.015 Sum_probs=22.9
Q ss_pred CccccCCCCCCCcccc----CCeecccc---cCCCcchhcCCCCCCC
Q 042751 105 NCGKCGSKCKFGQLCC----NGTCTNVF---DNEAHCGKCNKKCPRG 144 (155)
Q Consensus 105 NCG~Cg~~C~~g~~CC----gG~CVdl~---tD~~nCG~Cg~~C~~G 144 (155)
+||.|-.+|+.+..== .+. .... ..-..||.|-.+|+.+
T Consensus 52 ~C~~C~~~Cp~~a~~~~~~~~~~-~~~~~~~~~C~~Cg~C~~~CP~~ 97 (295)
T TIGR02494 52 GCGKCVEVCPAGTARLSELADGR-NRIIIRREKCTHCGKCTEACPSG 97 (295)
T ss_pred CCchhhhhCcccccccccccCCC-cceeechhhcCchhHhhccCcHh
Confidence 7899999999764210 000 0011 1224688888999864
No 53
>PRK09125 DNA ligase; Provisional
Probab=25.68 E-value=63 Score=27.67 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 042751 7 KLKAIFSSLAVTLLFM 22 (155)
Q Consensus 7 ~l~~~~~l~~~~al~~ 22 (155)
.|.++|+|.+++||++
T Consensus 3 ~~~~~~~~~~~~~~~~ 18 (282)
T PRK09125 3 LLLLLLALALLLALLL 18 (282)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4455666666666655
No 54
>PLN03207 stomagen; Provisional
Probab=24.33 E-value=1.6e+02 Score=22.87 Aligned_cols=21 Identities=10% Similarity=-0.025 Sum_probs=8.4
Q ss_pred chhhHHHHHHHHHHHHHHHHH
Q 042751 3 TSSRKLKAIFSSLAVTLLFMI 23 (155)
Q Consensus 3 ~~~~~l~~~~~l~~~~al~~~ 23 (155)
+|+....+||...+++|.+++
T Consensus 9 tt~~~~lffLl~~llla~~v~ 29 (113)
T PLN03207 9 TTRCLTLFFLLFFLLLGAYVI 29 (113)
T ss_pred cchhHHHHHHHHHHHHHHHHH
Confidence 333333333333334555553
No 55
>PF05702 Herpes_UL49_5: Herpesvirus UL49.5 envelope/tegument protein; InterPro: IPR008647 UL49.5 protein consists of 98 amino acids with a calculated molecular mass of 10,155 Da. It contains putative signal peptide and transmembrane domains but lacks a consensus sequence for N glycosylation. UL49.5 protein is an O-glycosylated structural component of the viral envelope [].
Probab=24.30 E-value=68 Score=24.42 Aligned_cols=17 Identities=24% Similarity=0.092 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q 042751 6 RKLKAIFSSLAVTLLFM 22 (155)
Q Consensus 6 ~~l~~~~~l~~~~al~~ 22 (155)
.-+.+.+.+++++||+.
T Consensus 9 v~l~~~~~~l~~~al~~ 25 (98)
T PF05702_consen 9 VTLSLAVCVLALLALSR 25 (98)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 33444444555555544
No 56
>PLN03222 rapid alkalinization factor 23-like protein; Provisional
Probab=23.95 E-value=63 Score=25.40 Aligned_cols=6 Identities=33% Similarity=0.739 Sum_probs=4.5
Q ss_pred chhhcc
Q 042751 57 RLLLSS 62 (155)
Q Consensus 57 RfLa~~ 62 (155)
|+|+++
T Consensus 68 R~L~~~ 73 (119)
T PLN03222 68 RILATT 73 (119)
T ss_pred HHHhhc
Confidence 888874
No 57
>PF01599 Ribosomal_S27: Ribosomal protein S27a; InterPro: IPR002906 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesized as a C-terminal extension of ubiquitin (CEP) (IPR000626 from INTERPRO). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis []. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2K4X_A 3U5C_f 3U5G_f 2XZN_9 2XZM_9.
Probab=23.56 E-value=29 Score=23.08 Aligned_cols=10 Identities=60% Similarity=1.514 Sum_probs=5.4
Q ss_pred cCCCCccccC
Q 042751 101 GDKNNCGKCG 110 (155)
Q Consensus 101 tD~~NCG~Cg 110 (155)
.|+..||.||
T Consensus 36 ~dR~~CGKCg 45 (47)
T PF01599_consen 36 KDRHYCGKCG 45 (47)
T ss_dssp SSEEEETTTS
T ss_pred CCCccCCCcc
Confidence 4555555554
No 58
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=23.48 E-value=1.1e+02 Score=19.27 Aligned_cols=39 Identities=28% Similarity=0.653 Sum_probs=19.9
Q ss_pred CCCccccCCeecccccCCCcchhcCCCCCCCCccCCceec
Q 042751 114 KFGQLCCNGTCTNVFDNEAHCGKCNKKCPRGVRCEFGNCG 153 (155)
Q Consensus 114 ~~g~~CCgG~CVdl~tD~~nCG~Cg~~C~~G~~C~~G~C~ 153 (155)
..+++-=+|+|+....--..|- =+..|..+..|..|.|.
T Consensus 2 ~~~~~~~~~~C~~~~~~g~~C~-~~~qC~~~s~C~~g~C~ 40 (52)
T PF01683_consen 2 PSGQVAINGQCVPRVQPGESCE-SDEQCIGGSVCVNGRCQ 40 (52)
T ss_pred CCCCEEECCEECccCCCCCCCC-CcCCCCCcCEEcCCEeE
Confidence 3444444555555443333333 14455566667777664
No 59
>PF09065 Haemadin: Haemadin; InterPro: IPR015150 Members of this family adopt a secondary structure consisting of five short beta-strands (beta1-beta5), which are arranged in two antiparallel distorted sheets formed by strands beta1-beta4-beta5 and beta2-beta3 facing each other. This beta-sandwich is stabilised by six enclosed cysteines arranged in a [1-2, 3-5, 4-6] disulphide pairing resulting in a disulphide-rich hydrophobic core that is largely inaccessible to bulk solvent. The close proximity of disulphide bonds [3-5] and [4-6] organises haemadin into four distinct loops. The N-terminal segment of this domain binds to the active site of thrombin, inhibiting it []. ; PDB: 1E0F_K.
Probab=23.25 E-value=26 Score=20.75 Aligned_cols=15 Identities=40% Similarity=1.136 Sum_probs=10.4
Q ss_pred CCCCCCccccCCeec
Q 042751 111 SKCKFGQLCCNGTCT 125 (155)
Q Consensus 111 ~~C~~g~~CCgG~CV 125 (155)
+.|-+||+|-.|+|.
T Consensus 6 kiclygqscndgqcs 20 (27)
T PF09065_consen 6 KICLYGQSCNDGQCS 20 (27)
T ss_dssp SEE-TTEEESSS-EE
T ss_pred eeeEecccccCCccc
Confidence 568888888888884
No 60
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=23.21 E-value=70 Score=25.13 Aligned_cols=6 Identities=17% Similarity=0.141 Sum_probs=2.9
Q ss_pred cceeec
Q 042751 93 KMHCRN 98 (155)
Q Consensus 93 ~~~Cvd 98 (155)
.+.|+.
T Consensus 97 ~~~C~~ 102 (212)
T PF11912_consen 97 IGSCYY 102 (212)
T ss_pred cCceec
Confidence 445554
No 61
>PRK10772 cell division protein FtsL; Provisional
Probab=22.74 E-value=93 Score=23.77 Aligned_cols=16 Identities=13% Similarity=0.413 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhh
Q 042751 10 AIFSSLAVTLLFMISH 25 (155)
Q Consensus 10 ~~~~l~~~~al~~~~~ 25 (155)
++++++++.|+.++.+
T Consensus 28 ~Ll~~vv~SAl~VV~~ 43 (108)
T PRK10772 28 CLFIAVIVSAVTVVTT 43 (108)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555666667755443
No 62
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=22.24 E-value=32 Score=23.45 Aligned_cols=10 Identities=60% Similarity=1.391 Sum_probs=5.7
Q ss_pred cCCCCccccC
Q 042751 101 GDKNNCGKCG 110 (155)
Q Consensus 101 tD~~NCG~Cg 110 (155)
.|+.+||.||
T Consensus 35 ~dR~~CGkCg 44 (51)
T COG1998 35 KDRWACGKCG 44 (51)
T ss_pred CceeEecccc
Confidence 3566666664
No 63
>PF11714 Inhibitor_I53: Thrombin inhibitor Madanin ; InterPro: IPR021716 Members of this family are the peptidase inhibitor madanin proteins. These proteins were isolated from tick saliva [].
Probab=22.15 E-value=88 Score=22.85 Aligned_cols=15 Identities=20% Similarity=0.016 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 042751 8 LKAIFSSLAVTLLFM 22 (155)
Q Consensus 8 l~~~~~l~~~~al~~ 22 (155)
-+.||+|++|+..+|
T Consensus 3 hFaiLilavVaSAvV 17 (78)
T PF11714_consen 3 HFAILILAVVASAVV 17 (78)
T ss_pred hHHHHHHHHHHHHHH
Confidence 345555555555433
No 64
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.95 E-value=89 Score=29.38 Aligned_cols=10 Identities=30% Similarity=0.574 Sum_probs=4.9
Q ss_pred cccccCCCCC
Q 042751 42 VYVLDRPVPD 51 (155)
Q Consensus 42 ~~~ld~~~~~ 51 (155)
.++.+.|+|+
T Consensus 29 s~~~~~~~~~ 38 (440)
T KOG2357|consen 29 SFVGSDPSPA 38 (440)
T ss_pred ccccCCCCCC
Confidence 3555555444
No 65
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=21.83 E-value=77 Score=22.11 Aligned_cols=28 Identities=7% Similarity=-0.014 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHH-Hhhccccccccc
Q 042751 7 KLKAIFSSLAVTLLFM-ISHSQVAFSFDF 34 (155)
Q Consensus 7 ~l~~~~~l~~~~al~~-~~~~~~~~~~~~ 34 (155)
|+.++++.+|.++-|+ ++.......|+.
T Consensus 11 riVLLISfiIlfgRl~Y~~I~a~~hHq~k 39 (59)
T PF11119_consen 11 RIVLLISFIILFGRLIYSAIGAWVHHQDK 39 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4445555555566333 444444555543
No 66
>PF14851 FAM176: FAM176 family
Probab=21.80 E-value=2.1e+02 Score=23.17 Aligned_cols=13 Identities=15% Similarity=0.069 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 042751 10 AIFSSLAVTLLFM 22 (155)
Q Consensus 10 ~~~~l~~~~al~~ 22 (155)
+-+-||+.|.|+|
T Consensus 30 VC~GLlLtLcllV 42 (153)
T PF14851_consen 30 VCAGLLLTLCLLV 42 (153)
T ss_pred HHHHHHHHHHHHH
Confidence 4444555555544
No 67
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=21.61 E-value=1.2e+02 Score=20.62 Aligned_cols=9 Identities=11% Similarity=0.338 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 042751 12 FSSLAVTLL 20 (155)
Q Consensus 12 ~~l~~~~al 20 (155)
+++++++|+
T Consensus 9 ~~~v~~~~~ 17 (85)
T TIGR02209 9 LLAILVSAI 17 (85)
T ss_pred HHHHHHHHH
Confidence 333344444
No 68
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=21.58 E-value=18 Score=20.05 Aligned_cols=13 Identities=38% Similarity=1.145 Sum_probs=7.2
Q ss_pred CcchhcCCCCCCC
Q 042751 132 AHCGKCNKKCPRG 144 (155)
Q Consensus 132 ~nCG~Cg~~C~~G 144 (155)
.+||.|-.+|+.+
T Consensus 9 ~~Cg~C~~~CP~~ 21 (24)
T PF00037_consen 9 IGCGRCVEACPFD 21 (24)
T ss_dssp SS-THHHHHSTTS
T ss_pred CCcchhhhhcccc
Confidence 3566666666654
No 69
>PRK14758 hypothetical protein; Provisional
Probab=21.38 E-value=1.5e+02 Score=17.79 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHH
Q 042751 8 LKAIFSSLAVTLLFM 22 (155)
Q Consensus 8 l~~~~~l~~~~al~~ 22 (155)
+-+||+++|+-|++.
T Consensus 7 FEliLivlIlCalia 21 (27)
T PRK14758 7 FEFILIILILCALIA 21 (27)
T ss_pred HHHHHHHHHHHHHHH
Confidence 447777777777754
No 70
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=21.17 E-value=1.2e+02 Score=22.56 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHH
Q 042751 10 AIFSSLAVTLLFM 22 (155)
Q Consensus 10 ~~~~l~~~~al~~ 22 (155)
.||=|+-++|+++
T Consensus 30 AIFQliCilAiI~ 42 (85)
T PF06783_consen 30 AIFQLICILAIIL 42 (85)
T ss_pred HHHHHHHHHheee
Confidence 5777777777766
No 71
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=20.86 E-value=99 Score=23.23 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHh
Q 042751 12 FSSLAVTLLFMIS 24 (155)
Q Consensus 12 ~~l~~~~al~~~~ 24 (155)
.++|+++.||+..
T Consensus 13 v~~l~~~pl~~~~ 25 (91)
T TIGR01165 13 VAALVVLPLLIYA 25 (91)
T ss_pred HHHHHHHHHHhcc
Confidence 3344444445544
No 72
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.82 E-value=71 Score=27.28 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccc
Q 042751 7 KLKAIFSSLAVTLLFMISHSQVAFS 31 (155)
Q Consensus 7 ~l~~~~~l~~~~al~~~~~~~~~~~ 31 (155)
.|.++|+.+++||++++++.|+.++
T Consensus 3 ~~~~v~~~~~lla~~~s~a~elTfe 27 (209)
T KOG1693|consen 3 TLIVVLFQLLLLALLFSEASELTFE 27 (209)
T ss_pred eeHHHHHHHHHHHHHhhhcccEEEE
Confidence 3556666677777777766655443
No 73
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=20.77 E-value=1.2e+02 Score=24.97 Aligned_cols=17 Identities=24% Similarity=0.059 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 042751 6 RKLKAIFSSLAVTLLFM 22 (155)
Q Consensus 6 ~~l~~~~~l~~~~al~~ 22 (155)
++++|||++++++-|.-
T Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (289)
T TIGR03659 2 KILSLILLALLSLGLTG 18 (289)
T ss_pred chhHHHHHHHHHHHHHh
Confidence 46677777777766644
No 74
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=20.39 E-value=1.7e+02 Score=21.49 Aligned_cols=13 Identities=15% Similarity=-0.008 Sum_probs=6.5
Q ss_pred hhhHHHHHHHHHH
Q 042751 4 SSRKLKAIFSSLA 16 (155)
Q Consensus 4 ~~~~l~~~~~l~~ 16 (155)
+.+||+++.++-+
T Consensus 15 ~WkkiS~~va~P~ 27 (86)
T cd00925 15 LWKKISFYVALPA 27 (86)
T ss_pred hhhhhhhhhHHHH
Confidence 4456665544433
No 75
>PRK06273 ferredoxin; Provisional
Probab=20.18 E-value=28 Score=27.84 Aligned_cols=13 Identities=31% Similarity=0.922 Sum_probs=9.5
Q ss_pred CccccCCCCCCCc
Q 042751 105 NCGKCGSKCKFGQ 117 (155)
Q Consensus 105 NCG~Cg~~C~~g~ 117 (155)
+||.|-.+|+.+.
T Consensus 53 gCg~C~~aCP~~A 65 (165)
T PRK06273 53 GCGGCANVCPTKA 65 (165)
T ss_pred ChhHHHHhcCccc
Confidence 5788888887663
No 76
>COG5510 Predicted small secreted protein [Function unknown]
Probab=20.16 E-value=1.4e+02 Score=19.81 Aligned_cols=15 Identities=7% Similarity=0.073 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 042751 8 LKAIFSSLAVTLLFM 22 (155)
Q Consensus 8 l~~~~~l~~~~al~~ 22 (155)
.+++++.+++++-++
T Consensus 4 ~t~l~i~~vll~s~l 18 (44)
T COG5510 4 KTILLIALVLLASTL 18 (44)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
Done!