Query 042751
Match_columns 155
No_of_seqs 142 out of 214
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 15:49:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hvw_A Omega-ACTX-HV1A, omega- 74.0 1.6 5.4E-05 25.2 1.6 18 110-127 5-22 (26)
2 1axh_A Atracotoxin-HVI, ACTX-H 48.5 7.7 0.00026 23.9 1.4 17 110-126 8-24 (37)
3 4f4l_A ION transport protein; 43.1 12 0.00042 26.5 2.1 14 9-22 77-90 (112)
4 4aor_D Trypsin inhibitor 3; hy 41.0 15 0.00052 22.4 1.9 26 68-99 3-28 (37)
5 2lkq_A Immunoglobulin lambda-l 34.2 6.7 0.00023 22.2 -0.4 14 49-62 3-16 (26)
6 2e84_A High-molecular-weight c 32.9 13 0.00044 33.2 0.9 19 2-20 4-22 (556)
7 2fdn_A Ferredoxin; electron tr 25.7 25 0.00084 20.6 1.1 38 104-144 9-50 (55)
8 3o0r_C Nitric oxide reductase 22.6 75 0.0026 22.1 3.3 19 4-22 12-30 (146)
9 1oc0_B Vitronectin; hydrolase/ 20.8 31 0.001 22.1 0.8 31 91-122 4-34 (51)
10 1z1n_X Sixteen heme cytochrome 20.6 25 0.00086 31.2 0.5 19 2-20 4-22 (560)
No 1
>1hvw_A Omega-ACTX-HV1A, omega-atracotoxin-HV1A; cystine knot, beta-hairpin; NMR {Synthetic} SCOP: g.3.6.2
Probab=73.97 E-value=1.6 Score=25.17 Aligned_cols=18 Identities=33% Similarity=1.051 Sum_probs=12.0
Q ss_pred CCCCCCCccccCCeeccc
Q 042751 110 GSKCKFGQLCCNGTCTNV 127 (155)
Q Consensus 110 g~~C~~g~~CCgG~CVdl 127 (155)
|..|++.+.||.|.|++-
T Consensus 5 gq~Cp~~e~CCSGsCt~~ 22 (26)
T 1hvw_A 5 GQPCPYNENCCSQSCTGG 22 (26)
T ss_dssp TSBCSSTTSBSSCCEETT
T ss_pred CCcCCCCccccccccccc
Confidence 456777777777777653
No 2
>1axh_A Atracotoxin-HVI, ACTX-HVI; neurotoxin, insecticidal toxin, cystine knot, funnel-WEB; NMR {Hadronyche versuta} SCOP: g.3.6.2
Probab=48.46 E-value=7.7 Score=23.86 Aligned_cols=17 Identities=35% Similarity=1.108 Sum_probs=12.1
Q ss_pred CCCCCCCccccCCeecc
Q 042751 110 GSKCKFGQLCCNGTCTN 126 (155)
Q Consensus 110 g~~C~~g~~CCgG~CVd 126 (155)
|.-|++.+.||.|.|..
T Consensus 8 gQPCpyne~CCs~sct~ 24 (37)
T 1axh_A 8 GQPCPYNENCCSQSCTF 24 (37)
T ss_dssp TSBCSSGGGBSSSCEEE
T ss_pred CCcCCCcccccccccce
Confidence 56677777777777765
No 3
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=43.08 E-value=12 Score=26.48 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q 042751 9 KAIFSSLAVTLLFM 22 (155)
Q Consensus 9 ~~~~~l~~~~al~~ 22 (155)
.+++..++++-||+
T Consensus 77 fi~i~~fi~lNLfi 90 (112)
T 4f4l_A 77 FIMLTTFTVLNLFI 90 (112)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555555555
No 4
>4aor_D Trypsin inhibitor 3; hydrolase-inhibitor complex, miniprotein scaffold, knottins, protease inhibitor; HET: GOL MES; 1.70A {Spinacia oleracea} PDB: 4aoq_D*
Probab=41.04 E-value=15 Score=22.41 Aligned_cols=26 Identities=31% Similarity=0.783 Sum_probs=17.1
Q ss_pred ccCCcccCcccCCCCCCCCcccccccceeecc
Q 042751 68 QCSADHKNICNGVSANNGTSLLHCCKMHCRNI 99 (155)
Q Consensus 68 ~C~k~~~~IC~~~~~~~g~~g~~cC~~~Cvd~ 99 (155)
.|.+. ..||..-+++ ..||.+.||--
T Consensus 3 ~c~~s-~~ic~~f~~p-----~~ccsg~cvph 28 (37)
T 4aor_D 3 KCSPS-GAICSGFGPP-----EQCCSGACVPH 28 (37)
T ss_dssp -CBCT-TCEECTTSCG-----GGBTTSCEEEC
T ss_pred ccccC-CCccCCCCCc-----cccccccccCC
Confidence 36666 5789744322 57999999953
No 5
>2lkq_A Immunoglobulin lambda-like polypeptide 1; PRE-BCR, B cell development, immune system; NMR {Homo sapiens}
Probab=34.19 E-value=6.7 Score=22.23 Aligned_cols=14 Identities=29% Similarity=0.259 Sum_probs=10.9
Q ss_pred CCCCCCCCchhhcc
Q 042751 49 VPDHSPRSRLLLSS 62 (155)
Q Consensus 49 ~~~~~~~sRfLa~~ 62 (155)
++.++|.+|||.|.
T Consensus 3 sslrsrwgrfllqr 16 (26)
T 2lkq_A 3 SSLRSRWGRFLLQR 16 (26)
T ss_dssp TTTTTHHHHHTHHH
T ss_pred hhHHHHHHHHHHHc
Confidence 45677889999994
No 6
>2e84_A High-molecular-weight cytochrome C; cytochrome C3 motifs, electron transport; HET: HEM; 2.70A {Desulfovibrio vulgaris str}
Probab=32.87 E-value=13 Score=33.22 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=0.0
Q ss_pred CchhhHHHHHHHHHHHHHH
Q 042751 2 GTSSRKLKAIFSSLAVTLL 20 (155)
Q Consensus 2 ~~~~~~l~~~~~l~~~~al 20 (155)
|+.++.|.+||++|+++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~ 22 (556)
T 2e84_A 4 AKSLLRWAGALVAVAAVTV 22 (556)
T ss_dssp -------------------
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 4566666666666666665
No 7
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=25.69 E-value=25 Score=20.57 Aligned_cols=38 Identities=24% Similarity=0.743 Sum_probs=22.1
Q ss_pred CCccccCCCCCCCcccc-CCeecccccCC---CcchhcCCCCCCC
Q 042751 104 NNCGKCGSKCKFGQLCC-NGTCTNVFDNE---AHCGKCNKKCPRG 144 (155)
Q Consensus 104 ~NCG~Cg~~C~~g~~CC-gG~CVdl~tD~---~nCG~Cg~~C~~G 144 (155)
.+||.|-.+|+.+..== .+. ...|. ..||.|-.+|+.+
T Consensus 9 ~~C~~C~~~CP~~ai~~~~~~---~~~~~~~C~~C~~C~~~CP~~ 50 (55)
T 2fdn_A 9 ISCGACEPECPVNAISSGDDR---YVIDADTCIDCGACAGVCPVD 50 (55)
T ss_dssp CCCCTTGGGCTTCCEECCSSS---CEECTTTCCCCCHHHHTCTTC
T ss_pred cChhhHHHHCCccccCcCCCE---EEeccccCcChhChHHHcccc
Confidence 36888888888762210 111 11222 3578888888875
No 8
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=22.57 E-value=75 Score=22.10 Aligned_cols=19 Identities=16% Similarity=-0.048 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 042751 4 SSRKLKAIFSSLAVTLLFM 22 (155)
Q Consensus 4 ~~~~l~~~~~l~~~~al~~ 22 (155)
.++.+.++|++++++++.+
T Consensus 12 ~~~~~~~l~~~l~~~~~~~ 30 (146)
T 3o0r_C 12 NIYFGGSVFFILLFLALTY 30 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444
No 9
>1oc0_B Vitronectin; hydrolase/inhibitor, serine protease inhibitor/complex, serpin, proteinase inhibitor, fibrinolysis, cell migration; 2.28A {Homo sapiens} SCOP: g.64.1.1 PDB: 1s4g_A 1ssu_A 3bt2_B* 3bt1_B*
Probab=20.76 E-value=31 Score=22.15 Aligned_cols=31 Identities=29% Similarity=0.868 Sum_probs=22.0
Q ss_pred cccceeeccccCCCCccccCCCCCCCccccCC
Q 042751 91 CCKMHCRNILGDKNNCGKCGSKCKFGQLCCNG 122 (155)
Q Consensus 91 cC~~~Cvd~~tD~~NCG~Cg~~C~~g~~CCgG 122 (155)
-|.++|-........| .|...|.....||-.
T Consensus 4 SC~gRCge~~~~~~~C-~CD~~C~~~~~CC~D 34 (51)
T 1oc0_B 4 SCKGRCTEGFNVDKKC-QCDELCSYYQSCCTD 34 (51)
T ss_dssp CCTTCTTSCCCTTSSS-BCSTTGGGGTCBCTT
T ss_pred CccccCcCCCCCCCCC-CCCccccccCccccC
Confidence 5677777655555667 588888888888764
No 10
>1z1n_X Sixteen heme cytochrome; electron transport; HET: NAG NAA HEC; 2.10A {Desulfovibrio gigas}
Probab=20.58 E-value=25 Score=31.19 Aligned_cols=19 Identities=5% Similarity=0.046 Sum_probs=0.0
Q ss_pred CchhhHHHHHHHHHHHHHH
Q 042751 2 GTSSRKLKAIFSSLAVTLL 20 (155)
Q Consensus 2 ~~~~~~l~~~~~l~~~~al 20 (155)
+++++.+.+||++|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~ 22 (560)
T 1z1n_X 4 RKRAARWVGIPCAILFLTV 22 (560)
T ss_dssp -------------------
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 3556666666666666665
Done!