Query 042752
Match_columns 415
No_of_seqs 188 out of 540
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 09:04:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042752.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042752hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1327 Copine [Signal transdu 100.0 1.4E-78 3.1E-83 628.8 23.5 255 67-337 255-526 (529)
2 cd01459 vWA_copine_like VWA Co 100.0 4.7E-71 1E-75 533.4 20.7 223 79-326 19-254 (254)
3 PF07002 Copine: Copine; Inte 100.0 6.8E-49 1.5E-53 351.8 15.1 137 122-270 1-146 (146)
4 PF10138 vWA-TerF-like: vWA fo 100.0 7.3E-32 1.6E-36 253.1 17.7 197 98-335 2-200 (200)
5 cd01457 vWA_ORF176_type VWA OR 99.8 1.2E-19 2.7E-24 166.6 11.5 168 99-302 4-186 (199)
6 smart00327 VWA von Willebrand 98.8 2.6E-08 5.5E-13 86.2 10.8 150 98-286 2-160 (177)
7 cd01461 vWA_interalpha_trypsin 98.8 1.1E-07 2.5E-12 83.1 11.9 147 98-282 3-150 (171)
8 cd00198 vWFA Von Willebrand fa 98.6 8.7E-07 1.9E-11 74.0 12.2 147 99-283 2-154 (161)
9 cd01463 vWA_VGCC_like VWA Volt 98.6 5.7E-07 1.2E-11 82.0 12.1 148 97-281 13-176 (190)
10 cd01471 vWA_micronemal_protein 98.6 7.4E-07 1.6E-11 80.4 11.9 170 98-301 1-179 (186)
11 cd01464 vWA_subfamily VWA subf 98.5 4.7E-07 1E-11 81.5 9.3 145 97-283 3-160 (176)
12 cd01450 vWFA_subfamily_ECM Von 98.5 1.1E-06 2.3E-11 75.3 10.0 148 98-282 1-153 (161)
13 PF13519 VWA_2: von Willebrand 98.4 3.6E-06 7.9E-11 72.4 10.5 139 99-274 1-139 (172)
14 cd01454 vWA_norD_type norD typ 98.4 8.9E-06 1.9E-10 72.9 13.2 150 99-273 2-154 (174)
15 cd01466 vWA_C3HC4_type VWA C3H 98.3 3.2E-06 6.9E-11 75.1 9.9 142 98-282 1-145 (155)
16 cd01465 vWA_subgroup VWA subgr 98.3 1.7E-05 3.6E-10 69.6 14.0 146 98-280 1-149 (170)
17 cd01456 vWA_ywmD_type VWA ywmD 98.2 7.3E-06 1.6E-10 75.7 9.9 160 98-280 21-188 (206)
18 cd01472 vWA_collagen von Wille 98.1 3.1E-05 6.7E-10 68.6 11.3 142 98-282 1-151 (164)
19 cd01470 vWA_complement_factors 98.1 4.6E-05 9.9E-10 69.9 11.9 156 98-282 1-176 (198)
20 cd01482 vWA_collagen_alphaI-XI 98.1 3.7E-05 8.1E-10 68.5 10.9 142 99-282 2-151 (164)
21 TIGR03788 marine_srt_targ mari 98.1 2.9E-05 6.4E-10 83.4 11.9 145 98-281 272-418 (596)
22 cd01473 vWA_CTRP CTRP for CS 98.1 0.00012 2.6E-09 68.1 14.2 170 99-301 2-180 (192)
23 cd01476 VWA_integrin_invertebr 98.0 0.00011 2.4E-09 64.6 12.6 135 98-273 1-143 (163)
24 cd01467 vWA_BatA_type VWA BatA 98.0 9.3E-05 2E-09 65.9 11.1 140 98-271 3-142 (180)
25 PF13768 VWA_3: von Willebrand 97.9 6.9E-05 1.5E-09 65.6 9.1 140 99-280 2-145 (155)
26 cd01480 vWA_collagen_alpha_1-V 97.8 0.00028 6E-09 64.5 12.2 146 98-281 3-160 (186)
27 cd01474 vWA_ATR ATR (Anthrax T 97.8 0.00012 2.6E-09 66.6 8.9 146 98-282 5-155 (185)
28 cd01462 VWA_YIEM_type VWA YIEM 97.8 0.00052 1.1E-08 59.9 12.6 133 99-272 2-135 (152)
29 PF00092 VWA: von Willebrand f 97.7 0.00017 3.6E-09 63.0 9.0 112 99-234 1-117 (178)
30 cd01475 vWA_Matrilin VWA_Matri 97.7 0.00028 6E-09 66.4 10.9 141 98-281 3-155 (224)
31 PTZ00441 sporozoite surface pr 97.7 0.00041 8.9E-09 75.0 13.2 142 97-272 42-189 (576)
32 cd01453 vWA_transcription_fact 97.7 0.00044 9.6E-09 63.8 11.1 138 98-271 4-146 (183)
33 cd01460 vWA_midasin VWA_Midasi 97.6 0.00093 2E-08 66.2 12.4 138 98-272 61-205 (266)
34 cd01477 vWA_F09G8-8_type VWA F 97.5 0.0013 2.8E-08 61.6 11.9 139 98-272 20-172 (193)
35 PRK13685 hypothetical protein; 97.5 0.0014 3.1E-08 65.6 12.8 143 98-272 89-239 (326)
36 cd01451 vWA_Magnesium_chelatas 97.5 0.0018 3.8E-08 58.7 12.3 145 100-280 3-153 (178)
37 cd01469 vWA_integrins_alpha_su 97.5 0.0016 3.5E-08 59.1 11.7 135 98-272 1-143 (177)
38 PF09967 DUF2201: VWA-like dom 97.3 0.001 2.2E-08 58.5 8.1 121 100-280 1-125 (126)
39 cd01481 vWA_collagen_alpha3-VI 97.2 0.0049 1.1E-07 56.0 11.2 141 99-282 2-154 (165)
40 cd01455 vWA_F11C1-5a_type Von 97.1 0.0042 9.1E-08 59.0 10.7 155 99-279 2-160 (191)
41 cd01458 vWA_ku Ku70/Ku80 N-ter 97.1 0.019 4.1E-07 53.9 14.3 155 99-273 3-174 (218)
42 PRK13406 bchD magnesium chelat 97.1 0.0075 1.6E-07 65.7 13.2 156 97-283 401-559 (584)
43 TIGR02031 BchD-ChlD magnesium 96.9 0.013 2.7E-07 63.8 13.7 154 98-281 408-570 (589)
44 TIGR03436 acidobact_VWFA VWFA- 96.8 0.013 2.9E-07 57.1 11.7 134 98-271 54-204 (296)
45 cd01452 VWA_26S_proteasome_sub 96.7 0.016 3.4E-07 54.7 11.0 161 99-298 5-173 (187)
46 TIGR02442 Cob-chelat-sub cobal 96.3 0.063 1.4E-06 58.9 14.0 141 98-272 466-611 (633)
47 PRK10997 yieM hypothetical pro 95.7 0.19 4.1E-06 54.0 13.6 145 98-282 324-469 (487)
48 PF05762 VWA_CoxE: VWA domain 95.5 0.15 3.3E-06 48.6 10.8 122 98-258 58-179 (222)
49 TIGR00868 hCaCC calcium-activa 95.4 0.11 2.5E-06 59.1 11.4 141 99-280 306-449 (863)
50 COG4245 TerY Uncharacterized p 93.0 0.59 1.3E-05 45.0 8.7 141 98-281 4-159 (207)
51 COG2425 Uncharacterized protei 84.9 6.4 0.00014 42.2 10.0 130 99-268 274-405 (437)
52 PF03731 Ku_N: Ku70/Ku80 N-ter 83.0 21 0.00046 33.3 11.7 150 100-270 2-173 (224)
53 COG1240 ChlD Mg-chelatase subu 82.0 7.1 0.00015 39.2 8.4 145 94-273 75-224 (261)
54 PF11775 CobT_C: Cobalamin bio 66.3 19 0.00041 35.4 6.7 52 218-271 133-187 (219)
55 KOG2353 L-type voltage-depende 58.9 96 0.0021 37.2 11.8 147 98-278 226-382 (1104)
56 KOG4465 Uncharacterized conser 54.9 1E+02 0.0022 33.0 10.1 142 98-278 428-570 (598)
57 cd03313 enolase Enolase: Enola 45.6 1.4E+02 0.0031 31.4 9.6 64 79-148 212-278 (408)
58 TIGR00578 ku70 ATP-dependent D 45.6 4.1E+02 0.009 29.5 13.5 152 99-270 12-182 (584)
59 COG4548 NorD Nitric oxide redu 45.2 57 0.0012 36.3 6.7 83 195-280 527-609 (637)
60 PF00113 Enolase_C: Enolase, C 43.4 49 0.0011 33.7 5.6 154 76-266 76-233 (295)
61 PF06415 iPGM_N: BPG-independe 43.3 50 0.0011 32.5 5.5 56 204-270 13-71 (223)
62 PLN00191 enolase 42.1 2.6E+02 0.0057 30.2 11.1 71 77-148 240-312 (457)
63 TIGR01651 CobT cobaltochelatas 40.7 57 0.0012 36.5 6.0 63 206-272 501-568 (600)
64 PF02601 Exonuc_VII_L: Exonucl 40.1 82 0.0018 31.4 6.6 35 248-282 58-96 (319)
65 COG3959 Transketolase, N-termi 38.3 38 0.00083 33.8 3.8 72 182-266 89-174 (243)
66 PF04131 NanE: Putative N-acet 37.9 2.9E+02 0.0062 26.9 9.5 97 82-234 53-155 (192)
67 PTZ00081 enolase; Provisional 35.2 4.1E+02 0.0088 28.6 11.2 67 78-148 226-298 (439)
68 KOG2807 RNA polymerase II tran 35.1 1.4E+02 0.0031 31.4 7.4 144 93-271 57-203 (378)
69 COG1488 PncB Nicotinic acid ph 34.7 1.6E+02 0.0034 31.4 7.9 62 192-272 264-325 (405)
70 cd01468 trunk_domain trunk dom 30.8 4E+02 0.0087 25.5 9.5 162 99-281 5-211 (239)
71 PTZ00378 hypothetical protein; 30.1 8.1E+02 0.017 27.3 14.7 146 81-265 262-428 (518)
72 PRK00077 eno enolase; Provisio 29.6 4.5E+02 0.0097 27.9 10.3 63 79-148 215-278 (425)
73 PF04811 Sec23_trunk: Sec23/Se 28.4 5.2E+02 0.011 24.6 12.6 155 99-272 5-202 (243)
74 PF07466 DUF1517: Protein of u 27.1 1.1E+02 0.0024 31.1 5.1 15 218-232 216-232 (289)
75 COG4573 GatZ Predicted tagatos 25.6 4.4E+02 0.0095 28.2 9.1 107 205-352 28-141 (426)
76 TIGR00696 wecB_tagA_cpsF bacte 25.6 5.6E+02 0.012 24.0 9.2 60 194-271 50-110 (177)
77 PRK00286 xseA exodeoxyribonucl 25.5 1.7E+02 0.0037 30.7 6.3 66 205-283 147-214 (438)
78 cd01567 NAPRTase_PncB Nicotina 24.5 3.3E+02 0.0072 27.7 8.1 76 180-272 247-328 (343)
79 KOG2675 Adenylate cyclase-asso 23.7 2E+02 0.0043 31.4 6.4 64 261-335 146-212 (480)
80 KOG0260 RNA polymerase II, lar 22.6 2.3E+02 0.005 34.7 7.0 11 71-81 1569-1579(1605)
81 COG3864 Uncharacterized protei 22.0 81 0.0017 33.1 3.0 52 195-270 322-373 (396)
82 COG4822 CbiK Cobalamin biosynt 21.5 3.8E+02 0.0082 27.0 7.4 172 79-272 58-242 (265)
83 PF02601 Exonuc_VII_L: Exonucl 21.2 3.7E+02 0.008 26.8 7.5 84 179-276 26-122 (319)
84 PF00158 Sigma54_activat: Sigm 20.6 1.1E+02 0.0023 28.2 3.3 25 244-268 5-29 (168)
85 PRK00979 tetrahydromethanopter 20.6 1.7E+02 0.0038 30.2 5.1 47 204-264 55-101 (308)
86 TIGR00237 xseA exodeoxyribonuc 20.1 2.5E+02 0.0055 29.8 6.4 66 205-283 141-209 (432)
No 1
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-78 Score=628.82 Aligned_cols=255 Identities=48% Similarity=0.728 Sum_probs=237.0
Q ss_pred chhhccccccccccccHHHHHHHHHhcCCceeceEEEEeccCCCCCCCCCCCCCCCccccCC-CCCHHHHHHHHHhhccc
Q 042752 67 RRLDRKYSRIDDNYKSLDQVTGALAHAGLESSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGH-GQNPYEQAISIIGKTLS 145 (415)
Q Consensus 67 ~~~~~~~~~I~~~yssld~V~~aL~~~Gles~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~-~~N~YqqAI~~Ig~iL~ 145 (415)
++++.++..+.+.|+++++++-++..+|++++||+||||||+||+|++. +.|||||++ .+|+||+||++||+||+
T Consensus 255 k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~----~sSLHyi~p~~~N~Y~~Ai~~vG~~lq 330 (529)
T KOG1327|consen 255 KSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRN----PSSLHYIDPHQPNPYEQAIRSVGETLQ 330 (529)
T ss_pred hcccccceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCCCCC----CCcceecCCCCCCHHHHHHHHHhhhhc
Confidence 3456789999999999999999999999999999999999999999875 459999995 78999999999999999
Q ss_pred ccCCCCccceEeeCCCCCC---CCC--ccccCCCCCCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC--
Q 042752 146 AFDEDNLIPCFGFGDASTH---DQD--VFSFYPDDICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSG-- 218 (415)
Q Consensus 146 ~YD~Dk~iP~fGFGa~~t~---d~~--vFsf~~~~p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~-- 218 (415)
+||+||+||||||||+.+. .++ +|+|+|.+++|+|++|||++||+++|+|+|+|||+|+|||++|+++|+++.
T Consensus 331 ~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~ 410 (529)
T KOG1327|consen 331 DYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNPEDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNT 410 (529)
T ss_pred ccCCCCccccccccccCCCCcccccceeecCCCCCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccC
Confidence 9999999999999999665 344 456778999999999999999999999999999999999999999999886
Q ss_pred -CceEEEEEEeCCccccccccccCCCchhHHHHHHHHHHhccCCeEEEEEecccCCCccccccCCCCCC-------Cccc
Q 042752 219 -GQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQASEFPLSIILVGVGDGPWDMMKEFDDNIPA-------RAFD 290 (415)
Q Consensus 219 -~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~AS~lPLSIIiVGVGd~~F~~Me~LDd~~~~-------R~rD 290 (415)
++||||||||||+||| |++|++|||.||++|||||||||||+||++|++||++++. |.||
T Consensus 411 ~~qY~VLlIitDG~vTd------------m~~T~~AIV~AS~lPlSIIiVGVGd~df~~M~~lD~d~~~l~~~gr~~~rD 478 (529)
T KOG1327|consen 411 AGQYHVLLIITDGVVTD------------MKETRDAIVSASDLPLSIIIVGVGDADFDMMRELDGDDPKLRSPGRIAERD 478 (529)
T ss_pred CcceEEEEEEeCCcccc------------HHHHHHHHHhhccCCeEEEEEEeCCCCHHHHHHhhcCCccccccccccccc
Confidence 8999999999999997 8999999999999999999999999999999999998776 7899
Q ss_pred ceecccchhhhhhccccchhHHHHHHHHHHHhHHHHHHHHHh-CCCCC
Q 042752 291 NFQFVNFTEIMSKNMDLSRKETEFALAALMEIPSQYKATLEL-GILGH 337 (415)
Q Consensus 291 NvQFV~f~di~~k~~~~~~~e~~LA~~aL~EIP~Q~~ay~~l-giL~~ 337 (415)
|||||+|+||+.++.+.+.++++||+.+|||||+||++||++ |+++.
T Consensus 479 ~vQFV~f~~~~~~~~~~~~~~~~lA~~vL~EIP~Q~~~y~~~~~~~p~ 526 (529)
T KOG1327|consen 479 NVQFVPFRDIMNGAENPSDKEAALALAVLAEIPQQYVQYMRLRGILPK 526 (529)
T ss_pred ceEeecHHHHhhcCCcccchhHHHHHHHHHHhhHHHHHHHHhcCCCCC
Confidence 999999999999877777889999999999999999999999 45543
No 2
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=100.00 E-value=4.7e-71 Score=533.44 Aligned_cols=223 Identities=54% Similarity=0.890 Sum_probs=202.7
Q ss_pred ccccHHHHHHHHHhcCCceeceEEEEeccCCCCCCCCCCCCCCCccccCC-CCCHHHHHHHHHhhcccccCCCCccceEe
Q 042752 79 NYKSLDQVTGALAHAGLESSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGH-GQNPYEQAISIIGKTLSAFDEDNLIPCFG 157 (415)
Q Consensus 79 ~yssld~V~~aL~~~Gles~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~-~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fG 157 (415)
.|++|||+ ++|+| +||+||||||+||||+++ ++||||+++ ..|+||+||++||+||+.||+|++|||||
T Consensus 19 ~~tFldy~-----~~G~~-~nl~vaIDfT~SNg~p~~----~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~D~~ip~~G 88 (254)
T cd01459 19 QPTFLDYR-----SAGLE-SNLIVAIDFTKSNGWPGE----KRSLHYISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAFG 88 (254)
T ss_pred CCCHHHHH-----hCCCe-eeEEEEEEeCCCCCCCCC----CCCcccCCCCCccHHHHHHHHHHHHHHhcCCCCceeeEe
Confidence 89999999 69998 599999999999999764 589999976 57999999999999999999999999999
Q ss_pred eCCCCCCCCCcccc---CCCCCCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCC--ceEEEEEEeCCcc
Q 042752 158 FGDASTHDQDVFSF---YPDDICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGG--QYHVLLIIADGQV 232 (415)
Q Consensus 158 FGa~~t~d~~vFsf---~~~~p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~~--~Y~VLLIITDG~I 232 (415)
||++.+++..++++ ++++|+|.|++|||++|++++++|+|+|||+|+|||++|+++++++.. +|+||||||||+|
T Consensus 89 FGa~~~~~~~v~~~f~~~~~~p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~i 168 (254)
T cd01459 89 FGAIVTKDQSVFSFFPGYSESPECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEI 168 (254)
T ss_pred ecccCCCCCccccccCCCCCCCcccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCCc
Confidence 99998766555544 578999999999999999999999999999999999999999987643 4999999999999
Q ss_pred ccccccccCCCchhHHHHHHHHHHhccCCeEEEEEecccCCCccccccCC-------CCCCCcccceecccchhhhhhcc
Q 042752 233 TRSVDTQHGQLSSQEQKTIDAIVQASEFPLSIILVGVGDGPWDMMKEFDD-------NIPARAFDNFQFVNFTEIMSKNM 305 (415)
Q Consensus 233 tD~~d~~~~~~~~d~~eTidaIV~AS~lPLSIIiVGVGd~~F~~Me~LDd-------~~~~R~rDNvQFV~f~di~~k~~ 305 (415)
+| +++|+++|++||++||||||||||+++|+.|++||+ ..+.|.|||||||+|++++...
T Consensus 169 ~D------------~~~t~~aIv~AS~~PlSIiiVGVGd~~F~~M~~LD~d~~l~~~~~~~~~rDnvqFV~f~~~~~~~- 235 (254)
T cd01459 169 TD------------MNETIKAIVEASKYPLSIVIVGVGDGPFDAMERLDDDDGLESSDGRIATRDIVQFVPFTEFMSNA- 235 (254)
T ss_pred cc------------HHHHHHHHHHHhcCCeEEEEEEeCCCChHHHHHhcCccccccccCCcceecceeeecchhhcccc-
Confidence 97 899999999999999999999999999999999998 3567789999999999997421
Q ss_pred ccchhHHHHHHHHHHHhHHHH
Q 042752 306 DLSRKETEFALAALMEIPSQY 326 (415)
Q Consensus 306 ~~~~~e~~LA~~aL~EIP~Q~ 326 (415)
..++++||+++|+|||+||
T Consensus 236 --~~~~~~La~~~L~EiP~Q~ 254 (254)
T cd01459 236 --GNPEAALATAALAEIPSQL 254 (254)
T ss_pred --cccHHHHHHHHHHhccccC
Confidence 1357899999999999996
No 3
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=100.00 E-value=6.8e-49 Score=351.83 Aligned_cols=137 Identities=49% Similarity=0.894 Sum_probs=128.9
Q ss_pred CccccCCC-CCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCC---CccccC--CCCCCcCCHHHHHHHHHhhCCce
Q 042752 122 SLHHIGHG-QNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQ---DVFSFY--PDDICCNGFEEVLTQYREIVPSL 195 (415)
Q Consensus 122 SLHyi~~~-~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~---~vFsf~--~~~p~c~G~egVL~aYr~~l~~v 195 (415)
||||+++. +|+||+||++||+||+.||+||+||+|||||+.+++. +||+|+ +++|+|.|++|||++||+++++|
T Consensus 1 SLH~~~~~~~N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v 80 (146)
T PF07002_consen 1 SLHYISPNQPNPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKV 80 (146)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhhe
Confidence 89999984 8999999999999999999999999999999987654 568776 57899999999999999999999
Q ss_pred eecCCCChHHHHHHHHHHHHh---cCCceEEEEEEeCCccccccccccCCCchhHHHHHHHHHHhccCCeEEEEEecc
Q 042752 196 RLAGPTSFAPIIEMATTIVEK---SGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQASEFPLSIILVGVG 270 (415)
Q Consensus 196 ~LsGPT~FAPVI~~ai~iv~~---s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~AS~lPLSIIiVGVG 270 (415)
+|+|||+|+|||++|++++++ .+++|+||||||||+|+| |++|++||++||++||||||||||
T Consensus 81 ~l~GPT~fapiI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~D------------~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 81 QLSGPTNFAPIINHAAKIAKQSNQNGQQYFILLILTDGQITD------------MEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred EECCCccHHHHHHHHHHHHhhhccCCceEEEEEEeccccccc------------HHHHHHHHHHHccCCeEEEEEEeC
Confidence 999999999999999999984 567999999999999997 899999999999999999999998
No 4
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=99.98 E-value=7.3e-32 Score=253.11 Aligned_cols=197 Identities=24% Similarity=0.346 Sum_probs=163.1
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDIC 177 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~ 177 (415)
.++.++||-|+||. .+ |. ....|++++++..+...||+|+.+++|.|+....+..+| .
T Consensus 2 ArV~LVLD~SGSM~----------~~-yk---~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~~~v--------t 59 (200)
T PF10138_consen 2 ARVYLVLDISGSMR----------PL-YK---DGTVQRVVERILALAAQFDDDGEIDVWFFSTEFDRLPDV--------T 59 (200)
T ss_pred cEEEEEEeCCCCCc----------hh-hh---CccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcCCCc--------C
Confidence 47899999999994 12 32 356899999999999999999999999999886554444 2
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc-CCc-eEEEEEEeCCccccccccccCCCchhHHHHHHHHH
Q 042752 178 CNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKS-GGQ-YHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIV 255 (415)
Q Consensus 178 c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s-~~~-Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV 255 (415)
...+++.++.....++.+...|-|+++|||++|++.+.++ +.. -...|+||||.++| .+++.++|+
T Consensus 60 ~~~~~~~v~~~~~~~~~~~~~G~t~y~~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~~~------------~~~~~~~i~ 127 (200)
T PF10138_consen 60 LDNYEGYVDELHAGLPDWGRMGGTNYAPVMEDVLDHYFKREPSDAPALVLFITDGGPDD------------RRAIEKLIR 127 (200)
T ss_pred HHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHhhcCCCCCCeEEEEEecCCccc------------hHHHHHHHH
Confidence 2345566644433334445456699999999999998744 233 34458999999986 789999999
Q ss_pred HhccCCeEEEEEecccCCCccccccCCCCCCCcccceecccchhhhhhccccchhHHHHHHHHHHHhHHHHHHHHHhCCC
Q 042752 256 QASEFPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNMDLSRKETEFALAALMEIPSQYKATLELGIL 335 (415)
Q Consensus 256 ~AS~lPLSIIiVGVGd~~F~~Me~LDd~~~~R~rDNvQFV~f~di~~k~~~~~~~e~~LA~~aL~EIP~Q~~ay~~lgiL 335 (415)
+||++||+|+|||||+.+|+.|++||+ +.+|.+||+.||.+.++.. .++++|++.+|.|+|.|+++++++|||
T Consensus 128 ~as~~pifwqFVgiG~~~f~fL~kLD~-l~gR~vDNa~Ff~~~d~~~------lsD~eLy~~LL~Efp~Wl~~ar~~gi~ 200 (200)
T PF10138_consen 128 EASDEPIFWQFVGIGDSNFGFLEKLDD-LAGRVVDNAGFFAIDDIDE------LSDEELYDRLLAEFPDWLKAARAKGIL 200 (200)
T ss_pred hccCCCeeEEEEEecCCcchHHHHhhc-cCCcccCCcCeEecCCccc------CCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999 5999999999999999852 578999999999999999999999987
No 5
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.81 E-value=1.2e-19 Score=166.57 Aligned_cols=168 Identities=18% Similarity=0.248 Sum_probs=127.1
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCCc
Q 042752 99 NLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDICC 178 (415)
Q Consensus 99 nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~c 178 (415)
+++++||.|+||++.. .+.++| ..+.+++++.+++.++..||.|+...+++|+.... ++..
T Consensus 4 dvv~~ID~SgSM~~~~----~~~~~~----k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~----~~~~------- 64 (199)
T cd01457 4 DYTLLIDKSGSMAEAD----EAKERS----RWEEAQESTRALARKCEEYDSDGITVYLFSGDFRR----YDNV------- 64 (199)
T ss_pred CEEEEEECCCcCCCCC----CCCCch----HHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCccc----cCCc-------
Confidence 6899999999998632 122344 35899999999999999999999777777665421 1111
Q ss_pred CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHH-Hhc-C----CceEEEEEEeCCccccccccccCCCchhHHHHHH
Q 042752 179 NGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIV-EKS-G----GQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTID 252 (415)
Q Consensus 179 ~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv-~~s-~----~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTid 252 (415)
. .+++.+.+.+ +...|+|++.+.|+.+++.. +.. . ..+.++||||||..++ .+++.+
T Consensus 65 ~-~~~v~~~~~~----~~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d------------~~~~~~ 127 (199)
T cd01457 65 N-SSKVDQLFAE----NSPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDD------------KDAVER 127 (199)
T ss_pred C-HHHHHHHHhc----CCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCc------------HHHHHH
Confidence 1 5666666654 33469999999999998543 221 1 1278889999999875 678899
Q ss_pred HHHHhccC-----CeEEEEEecccC--CCccccccCCCC--CCCcccceecccchhhhh
Q 042752 253 AIVQASEF-----PLSIILVGVGDG--PWDMMKEFDDNI--PARAFDNFQFVNFTEIMS 302 (415)
Q Consensus 253 aIV~AS~l-----PLSIIiVGVGd~--~F~~Me~LDd~~--~~R~rDNvQFV~f~di~~ 302 (415)
+|++|++. +|.|.|||||++ .+..|++||+.+ .++.||||+||+|+++..
T Consensus 128 ~i~~a~~~l~~~~~i~i~~v~vG~~~~~~~~L~~ld~~~~~~~~~~d~vd~~~~~~~~~ 186 (199)
T cd01457 128 VIIKASDELDADNELAISFLQIGRDPAATAFLKALDDQLQEVGAKFDIVDTVTWDDMER 186 (199)
T ss_pred HHHHHHHhhccccCceEEEEEeCCcHHHHHHHHHHhHHHHhcCCcccceeeeeHHhhhc
Confidence 99999863 888999999875 889999999853 346799999999999864
No 6
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=98.85 E-value=2.6e-08 Score=86.18 Aligned_cols=150 Identities=19% Similarity=0.295 Sum_probs=107.8
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceEeeCCCCCCCCCccccCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDE---DNLIPCFGFGDASTHDQDVFSFYPD 174 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~---Dk~iP~fGFGa~~t~d~~vFsf~~~ 174 (415)
.++++.||.|.|+. ......+...+..++..+.. +..|-+++|++.... .+++.
T Consensus 2 ~~v~l~vD~S~SM~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~---~~~~~-- 58 (177)
T smart00327 2 LDVVFLLDGSGSMG------------------PNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATV---LFPLN-- 58 (177)
T ss_pred ccEEEEEeCCCccc------------------hHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceE---EEccc--
Confidence 47899999999994 12345555555555555554 889999999985322 22221
Q ss_pred CCCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc--C---CceEEEEEEeCCccccccccccCCCchhHHH
Q 042752 175 DICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKS--G---GQYHVLLIIADGQVTRSVDTQHGQLSSQEQK 249 (415)
Q Consensus 175 ~p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s--~---~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~e 249 (415)
.+.+.+.++.......+. ..|.|++...|+.+++.+++. . +...+++|||||...+. +.
T Consensus 59 --~~~~~~~~~~~i~~~~~~--~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~------------~~ 122 (177)
T smart00327 59 --DSRSKDALLEALASLSYK--LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDG------------GD 122 (177)
T ss_pred --ccCCHHHHHHHHHhcCCC--CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCC------------cc
Confidence 345777777776655543 578899999999999987521 1 12578999999988751 46
Q ss_pred HHHHHHHhccCCeEEEEEecccC-CCccccccCCCCCC
Q 042752 250 TIDAIVQASEFPLSIILVGVGDG-PWDMMKEFDDNIPA 286 (415)
Q Consensus 250 TidaIV~AS~lPLSIIiVGVGd~-~F~~Me~LDd~~~~ 286 (415)
+.+++..+....+.|++||+|+. +.+.|+.|.....+
T Consensus 123 ~~~~~~~~~~~~i~i~~i~~~~~~~~~~l~~~~~~~~~ 160 (177)
T smart00327 123 LLKAAKELKRSGVKVFVVGVGNDVDEEELKKLASAPGG 160 (177)
T ss_pred HHHHHHHHHHCCCEEEEEEccCccCHHHHHHHhCCCcc
Confidence 67777777777899999999998 89999999875443
No 7
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.75 E-value=1.1e-07 Score=83.15 Aligned_cols=147 Identities=18% Similarity=0.260 Sum_probs=102.2
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDIC 177 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~ 177 (415)
.++++.+|.|+|+.. ...+.|...+..++..+..+..|-+++|+..... ++.. ..
T Consensus 3 ~~v~~vlD~S~SM~~------------------~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~---~~~~----~~ 57 (171)
T cd01461 3 KEVVFVIDTSGSMSG------------------TKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEE---FSPS----SV 57 (171)
T ss_pred ceEEEEEECCCCCCC------------------hhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCcee---ecCc----ce
Confidence 489999999999941 1256777777778888888888999999886432 1110 01
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccccccccCCCchhHHHHHHHHHHh
Q 042752 178 CNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQA 257 (415)
Q Consensus 178 c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~A 257 (415)
..+.+. ++...+.+..+...|-|++...|+.+.+..+...+.-.++|+||||...+ .+++.+++.++
T Consensus 58 ~~~~~~-~~~~~~~l~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~------------~~~~~~~~~~~ 124 (171)
T cd01461 58 SATAEN-VAAAIEYVNRLQALGGTNMNDALEAALELLNSSPGSVPQIILLTDGEVTN------------ESQILKNVREA 124 (171)
T ss_pred eCCHHH-HHHHHHHHHhcCCCCCcCHHHHHHHHHHhhccCCCCccEEEEEeCCCCCC------------HHHHHHHHHHh
Confidence 112222 22223344456668999999999999888765333447889999999654 46777888888
Q ss_pred ccCCeEEEEEeccc-CCCccccccCC
Q 042752 258 SEFPLSIILVGVGD-GPWDMMKEFDD 282 (415)
Q Consensus 258 S~lPLSIIiVGVGd-~~F~~Me~LDd 282 (415)
.+..+.|..||+|. .+...|+.+-+
T Consensus 125 ~~~~i~i~~i~~g~~~~~~~l~~ia~ 150 (171)
T cd01461 125 LSGRIRLFTFGIGSDVNTYLLERLAR 150 (171)
T ss_pred cCCCceEEEEEeCCccCHHHHHHHHH
Confidence 77788999999996 45666666654
No 8
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=98.60 E-value=8.7e-07 Score=73.96 Aligned_cols=147 Identities=16% Similarity=0.314 Sum_probs=97.9
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceEeeCCCCCCCCCccccCCCC
Q 042752 99 NLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDE---DNLIPCFGFGDASTHDQDVFSFYPDD 175 (415)
Q Consensus 99 nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~---Dk~iP~fGFGa~~t~d~~vFsf~~~~ 175 (415)
+++++||.|+|+. ....+++...+..++..+.. ...+-+++|+..... ++.+..
T Consensus 2 ~v~~viD~S~Sm~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~---~~~~~~-- 58 (161)
T cd00198 2 DIVFLLDVSGSMG------------------GEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARV---VLPLTT-- 58 (161)
T ss_pred cEEEEEeCCCCcC------------------cchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccce---eecccc--
Confidence 6899999999982 23446666666666666665 788999999874221 222221
Q ss_pred CCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc--CCceEEEEEEeCCccccccccccCCCchhHHHHHHH
Q 042752 176 ICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKS--GGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDA 253 (415)
Q Consensus 176 p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s--~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTida 253 (415)
+...+.+.+.-.. +.. ...|.|.+...++.+.+...+. .....+|++||||..++. .....+.
T Consensus 59 --~~~~~~~~~~~~~-~~~-~~~~~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~-----------~~~~~~~ 123 (161)
T cd00198 59 --DTDKADLLEAIDA-LKK-GLGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDG-----------PELLAEA 123 (161)
T ss_pred --cCCHHHHHHHHHh-ccc-CCCCCccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCC-----------cchhHHH
Confidence 1233333332222 111 4789999999999999988663 456789999999987652 1244555
Q ss_pred HHHhccCCeEEEEEeccc-CCCccccccCCC
Q 042752 254 IVQASEFPLSIILVGVGD-GPWDMMKEFDDN 283 (415)
Q Consensus 254 IV~AS~lPLSIIiVGVGd-~~F~~Me~LDd~ 283 (415)
+..+....+.|.+||+|+ .+-..++.|+..
T Consensus 124 ~~~~~~~~v~v~~v~~g~~~~~~~l~~l~~~ 154 (161)
T cd00198 124 ARELRKLGITVYTIGIGDDANEDELKEIADK 154 (161)
T ss_pred HHHHHHcCCEEEEEEcCCCCCHHHHHHHhcc
Confidence 666667799999999998 666666666653
No 9
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.60 E-value=5.7e-07 Score=82.02 Aligned_cols=148 Identities=15% Similarity=0.262 Sum_probs=98.1
Q ss_pred eeceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCC-
Q 042752 97 SSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDD- 175 (415)
Q Consensus 97 s~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~- 175 (415)
..++++.||.|+|+.. +..+.|-..+..++..+..+..+-++.|+..... ++.+....
T Consensus 13 p~~vv~llD~SgSM~~------------------~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~~---~~~~~~~~~ 71 (190)
T cd01463 13 PKDIVILLDVSGSMTG------------------QRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNP---VVPCFNDTL 71 (190)
T ss_pred CceEEEEEECCCCCCc------------------HHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCeeE---Eeeecccce
Confidence 3799999999999951 2345666666667777787789999999987532 22221110
Q ss_pred --CCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHh---c------CCceEEEEEEeCCccccccccccCCCc
Q 042752 176 --ICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEK---S------GGQYHVLLIIADGQVTRSVDTQHGQLS 244 (415)
Q Consensus 176 --p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~---s------~~~Y~VLLIITDG~ItD~~d~~~~~~~ 244 (415)
......+.+ .+.+..++..|.|++...|+.|.+..++ . ...-.++++||||..++
T Consensus 72 ~~~~~~~~~~~----~~~l~~l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~---------- 137 (190)
T cd01463 72 VQATTSNKKVL----KEALDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPEN---------- 137 (190)
T ss_pred EecCHHHHHHH----HHHHhhCCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCc----------
Confidence 001122333 3345667778999999999999887765 1 12236789999998664
Q ss_pred hhHHHHHHHHHHh--ccCCeEEEEEecccC--CCccccccC
Q 042752 245 SQEQKTIDAIVQA--SEFPLSIILVGVGDG--PWDMMKEFD 281 (415)
Q Consensus 245 ~d~~eTidaIV~A--S~lPLSIIiVGVGd~--~F~~Me~LD 281 (415)
..+.++++... .+.++-|..||||.. +...|++|=
T Consensus 138 --~~~~~~~~~~~~~~~~~v~i~tigiG~~~~d~~~L~~lA 176 (190)
T cd01463 138 --YKEIFDKYNWDKNSEIPVRVFTYLIGREVTDRREIQWMA 176 (190)
T ss_pred --HhHHHHHhcccccCCCcEEEEEEecCCccccchHHHHHH
Confidence 34455554432 235899999999975 577777664
No 10
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=98.57 E-value=7.4e-07 Score=80.42 Aligned_cols=170 Identities=11% Similarity=0.163 Sum_probs=107.5
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCCccccCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFD---EDNLIPCFGFGDASTHDQDVFSFYPD 174 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD---~Dk~iP~fGFGa~~t~d~~vFsf~~~ 174 (415)
+++++.||-|+|++. .|-+.++...+..+++.+. ++-.+-++.|+.... .++.|...
T Consensus 1 ~Dv~~vlD~SgSm~~-----------------~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~---~~~~l~~~ 60 (186)
T cd01471 1 LDLYLLVDGSGSIGY-----------------SNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAK---ELIRLSSP 60 (186)
T ss_pred CcEEEEEeCCCCccc-----------------hhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCce---EEEECCCc
Confidence 368999999999852 1224666666777777664 445899999987643 23444321
Q ss_pred CCCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc----CCceEEEEEEeCCccccccccccCCCchhHHHH
Q 042752 175 DICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKS----GGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKT 250 (415)
Q Consensus 175 ~p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s----~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eT 250 (415)
. -...+.+++.-+.+......+|-|+++..++.|.+...+. ...-.+++|||||.-++ ..++
T Consensus 61 ~--~~~~~~~~~~i~~l~~~~~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~------------~~~~ 126 (186)
T cd01471 61 N--STNKDLALNAIRALLSLYYPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDS------------KFRT 126 (186)
T ss_pred c--ccchHHHHHHHHHHHhCcCCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCC------------Ccch
Confidence 1 1122332222223333345689999999999999887642 12235779999998664 1344
Q ss_pred HHHHHHhccCCeEEEEEeccc-CCCccccccCCCC-CCCcccceecccchhhh
Q 042752 251 IDAIVQASEFPLSIILVGVGD-GPWDMMKEFDDNI-PARAFDNFQFVNFTEIM 301 (415)
Q Consensus 251 idaIV~AS~lPLSIIiVGVGd-~~F~~Me~LDd~~-~~R~rDNvQFV~f~di~ 301 (415)
+++..+..+..+-|.+||||. .+.+.|+.|-+.. ..-..++.-...|+++.
T Consensus 127 ~~~a~~l~~~gv~v~~igiG~~~d~~~l~~ia~~~~~~~~~~~~~~~~~~~~~ 179 (186)
T cd01471 127 LKEARKLRERGVIIAVLGVGQGVNHEENRSLVGCDPDDSPCPLYLQSSWSEVQ 179 (186)
T ss_pred hHHHHHHHHCCCEEEEEEeehhhCHHHHHHhcCCCCCCCCCCeeecCCHHHHH
Confidence 455555556789999999996 4777777776532 11124666667777764
No 11
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.52 E-value=4.7e-07 Score=81.50 Aligned_cols=145 Identities=19% Similarity=0.273 Sum_probs=95.7
Q ss_pred eeceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCCccccCC
Q 042752 97 SSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFD---EDNLIPCFGFGDASTHDQDVFSFYP 173 (415)
Q Consensus 97 s~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD---~Dk~iP~fGFGa~~t~d~~vFsf~~ 173 (415)
.+++++.||.|+|+.. +.+ ..-++|+..+...|...+ ++..+-++.|+.... .++++..
T Consensus 3 ~~~v~~llD~SgSM~~--------~~~-------~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~---~~~~l~~ 64 (176)
T cd01464 3 RLPIYLLLDTSGSMAG--------EPI-------EALNQGLQMLQSELRQDPYALESVEISVITFDSAAR---VIVPLTP 64 (176)
T ss_pred CCCEEEEEECCCCCCC--------hHH-------HHHHHHHHHHHHHHhcChhhccccEEEEEEecCCce---EecCCcc
Confidence 4689999999999952 111 223456666655554432 345799999988542 2333322
Q ss_pred CCCCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCc---------eEEEEEEeCCccccccccccCCCc
Q 042752 174 DDICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQ---------YHVLLIIADGQVTRSVDTQHGQLS 244 (415)
Q Consensus 174 ~~p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~~~---------Y~VLLIITDG~ItD~~d~~~~~~~ 244 (415)
. . ......+...|-|++...|+.|.+......+. -.++++||||.-+|
T Consensus 65 ~-------~------~~~~~~l~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~---------- 121 (176)
T cd01464 65 L-------E------SFQPPRLTASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTD---------- 121 (176)
T ss_pred H-------H------hcCCCcccCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCc----------
Confidence 1 1 01234567789999999999999886543211 14789999998765
Q ss_pred hhHHHHHHHHHHhccCCeEEEEEeccc-CCCccccccCCC
Q 042752 245 SQEQKTIDAIVQASEFPLSIILVGVGD-GPWDMMKEFDDN 283 (415)
Q Consensus 245 ~d~~eTidaIV~AS~lPLSIIiVGVGd-~~F~~Me~LDd~ 283 (415)
+.....+++.++-...+-|..||||. .+.+.|++|-+.
T Consensus 122 -~~~~~~~~~~~~~~~~~~i~~igiG~~~~~~~L~~ia~~ 160 (176)
T cd01464 122 -DLTAAIERIKEARDSKGRIVACAVGPKADLDTLKQITEG 160 (176)
T ss_pred -hHHHHHHHHHhhcccCCcEEEEEeccccCHHHHHHHHCC
Confidence 13444577877777789999999995 677777777653
No 12
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=98.48 E-value=1.1e-06 Score=75.29 Aligned_cols=148 Identities=14% Similarity=0.205 Sum_probs=95.2
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDIC 177 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~ 177 (415)
+++++.+|.|+|+.. . . ...-.+++..+...+...+.+-.+-++.|++.... ++.+....
T Consensus 1 ~di~~llD~S~Sm~~--------~---~----~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~---~~~~~~~~-- 60 (161)
T cd01450 1 LDIVFLLDGSESVGP--------E---N----FEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRV---EFSLNDYK-- 60 (161)
T ss_pred CcEEEEEeCCCCcCH--------H---H----HHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceE---EEECCCCC--
Confidence 368899999999952 0 0 11223444444444445555889999999986432 33442221
Q ss_pred cCCHHHHHHHHHhhCCceeec-CCCChHHHHHHHHHHHHhcC----CceEEEEEEeCCccccccccccCCCchhHHHHHH
Q 042752 178 CNGFEEVLTQYREIVPSLRLA-GPTSFAPIIEMATTIVEKSG----GQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTID 252 (415)
Q Consensus 178 c~G~egVL~aYr~~l~~v~Ls-GPT~FAPVI~~ai~iv~~s~----~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTid 252 (415)
..+.+++.-..... .. |-|++...++.+.+.+.+.. ..-.++++||||..++. .+..+
T Consensus 61 --~~~~~~~~i~~~~~---~~~~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~------------~~~~~ 123 (161)
T cd01450 61 --SKDDLLKAVKNLKY---LGGGGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDG------------GDPKE 123 (161)
T ss_pred --CHHHHHHHHHhccc---CCCCCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCC------------cchHH
Confidence 34455544433211 12 47999999999999886653 45688999999987651 13444
Q ss_pred HHHHhccCCeEEEEEecccCCCccccccCC
Q 042752 253 AIVQASEFPLSIILVGVGDGPWDMMKEFDD 282 (415)
Q Consensus 253 aIV~AS~lPLSIIiVGVGd~~F~~Me~LDd 282 (415)
++.+..+..+-|++||||..+.+.|++|=+
T Consensus 124 ~~~~~~~~~v~v~~i~~g~~~~~~l~~la~ 153 (161)
T cd01450 124 AAAKLKDEGIKVFVVGVGPADEEELREIAS 153 (161)
T ss_pred HHHHHHHCCCEEEEEeccccCHHHHHHHhC
Confidence 455555568999999999977888877754
No 13
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=98.36 E-value=3.6e-06 Score=72.41 Aligned_cols=139 Identities=17% Similarity=0.266 Sum_probs=95.5
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCCc
Q 042752 99 NLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDICC 178 (415)
Q Consensus 99 nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~c 178 (415)
+++|.||-|+|+.+.+ ...+..++|...+..++..+..+ .|-++.|+.... .++.+ .
T Consensus 1 dvv~v~D~SgSM~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~-~v~l~~f~~~~~---~~~~~------t 57 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYD-------------GNRTRIDQAKDALNELLANLPGD-RVGLVSFSDSSR---TLSPL------T 57 (172)
T ss_dssp EEEEEEE-SGGGGTTT-------------SSS-HHHHHHHHHHHHHHHHTTS-EEEEEEESTSCE---EEEEE------E
T ss_pred CEEEEEECCcccCCCC-------------CCCcHHHHHHHHHHHHHHHCCCC-EEEEEEeccccc---ccccc------c
Confidence 5899999999996421 12567889999999999988755 999999998531 12232 3
Q ss_pred CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccccccccCCCchhHHHHHHHHHHhc
Q 042752 179 NGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQAS 258 (415)
Q Consensus 179 ~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~AS 258 (415)
.+.+.++++-++..+.....|.|.+...|+.|.+........=-++|+||||.-+. ...+++..+.
T Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~--------------~~~~~~~~~~ 123 (172)
T PF13519_consen 58 SDKDELKNALNKLSPQGMPGGGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDNS--------------SDIEAAKALK 123 (172)
T ss_dssp SSHHHHHHHHHTHHHHG--SSS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHC--------------HHHHHHHHHH
T ss_pred ccHHHHHHHhhcccccccCccCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCCc--------------chhHHHHHHH
Confidence 46677777776666666678999999999999999876653445668999996542 2334666677
Q ss_pred cCCeEEEEEecccCCC
Q 042752 259 EFPLSIILVGVGDGPW 274 (415)
Q Consensus 259 ~lPLSIIiVGVGd~~F 274 (415)
+..+.|.+||+|...=
T Consensus 124 ~~~i~i~~v~~~~~~~ 139 (172)
T PF13519_consen 124 QQGITIYTVGIGSDSD 139 (172)
T ss_dssp CTTEEEEEEEES-TT-
T ss_pred HcCCeEEEEEECCCcc
Confidence 8889999999998654
No 14
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=98.35 E-value=8.9e-06 Score=72.95 Aligned_cols=150 Identities=15% Similarity=0.178 Sum_probs=92.4
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC-CCccceEeeCCCCCCCC--CccccCCCC
Q 042752 99 NLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDE-DNLIPCFGFGDASTHDQ--DVFSFYPDD 175 (415)
Q Consensus 99 nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~-Dk~iP~fGFGa~~t~d~--~vFsf~~~~ 175 (415)
.+.+.||.|+|+... +..+.|-..+..++..... +-.+-+|+|....+... .++...+-+
T Consensus 2 ~v~~llD~SgSM~~~-----------------~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~~~~~ 64 (174)
T cd01454 2 AVTLLLDLSGSMRSD-----------------RRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKIKDFD 64 (174)
T ss_pred EEEEEEECCCCCCCC-----------------cHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEecCcc
Confidence 578999999999520 2334444444444444442 55799999987631111 121110100
Q ss_pred CCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccccccccCCCchhHHHHHHHHH
Q 042752 176 ICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIV 255 (415)
Q Consensus 176 p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV 255 (415)
. . +..+-++.+..+...|-|.+...|+.+.+...+....--++++||||.-++. ++..+++. ..++.++++.
T Consensus 65 ~---~---~~~~~~~~l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~~~~-~~~~~~~~-~~~~~~~~~~ 136 (174)
T cd01454 65 E---S---LHERARKRLAALSPGGNTRDGAAIRHAAERLLARPEKRKILLVISDGEPNDL-DYYEGNVF-ATEDALRAVI 136 (174)
T ss_pred c---c---cchhHHHHHHccCCCCCCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCcCcc-cccCcchh-HHHHHHHHHH
Confidence 0 0 1112233344556678899999999999888755444568899999987753 22223321 2455666688
Q ss_pred HhccCCeEEEEEecccCC
Q 042752 256 QASEFPLSIILVGVGDGP 273 (415)
Q Consensus 256 ~AS~lPLSIIiVGVGd~~ 273 (415)
+|-+.-+.+..||||+..
T Consensus 137 ~~~~~gi~v~~igig~~~ 154 (174)
T cd01454 137 EARKLGIEVFGITIDRDA 154 (174)
T ss_pred HHHhCCcEEEEEEecCcc
Confidence 888889999999999865
No 15
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=98.34 E-value=3.2e-06 Score=75.06 Aligned_cols=142 Identities=13% Similarity=0.247 Sum_probs=91.8
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDIC 177 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~ 177 (415)
+++++.||.|+|+.. +..+.|-.++..++..+.++..+-+++|+..... ++++.+...
T Consensus 1 ~~v~~vlD~S~SM~~------------------~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~---~~~~~~~~~- 58 (155)
T cd01466 1 VDLVAVLDVSGSMAG------------------DKLQLVKHALRFVISSLGDADRLSIVTFSTSAKR---LSPLRRMTA- 58 (155)
T ss_pred CcEEEEEECCCCCCc------------------HHHHHHHHHHHHHHHhCCCcceEEEEEecCCccc---cCCCcccCH-
Confidence 368999999999951 1334555555556666656667999999986432 233322111
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCccccccccccCCCchhHHHHHHHHH
Q 042752 178 CNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSG--GQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIV 255 (415)
Q Consensus 178 c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~--~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV 255 (415)
.+.+.+ ++.+..+...|-|+...-++.+.+..++.. +.-.++++||||..++ . .++.
T Consensus 59 -~~~~~~----~~~i~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~------------~----~~~~ 117 (155)
T cd01466 59 -KGKRSA----KRVVDGLQAGGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNH------------G----AVVL 117 (155)
T ss_pred -HHHHHH----HHHHHhccCCCCccHHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCc------------c----hhhh
Confidence 112222 333444677889999999999999876542 2346889999998653 1 2234
Q ss_pred HhccCCeEEEEEecc-cCCCccccccCC
Q 042752 256 QASEFPLSIILVGVG-DGPWDMMKEFDD 282 (415)
Q Consensus 256 ~AS~lPLSIIiVGVG-d~~F~~Me~LDd 282 (415)
.+.+.++-|..||+| +.+.+.|+++=+
T Consensus 118 ~~~~~~v~v~~igig~~~~~~~l~~iA~ 145 (155)
T cd01466 118 RADNAPIPIHTFGLGASHDPALLAFIAE 145 (155)
T ss_pred cccCCCceEEEEecCCCCCHHHHHHHHh
Confidence 456679999999999 456666666543
No 16
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=98.33 E-value=1.7e-05 Score=69.58 Aligned_cols=146 Identities=18% Similarity=0.238 Sum_probs=96.1
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDIC 177 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~ 177 (415)
+|+++.+|.|.|+.. ...+.|...+..++..+..+..+-++.|+..... ++.+.+.
T Consensus 1 ~~~~~vlD~S~SM~~------------------~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~~---~~~~~~~--- 56 (170)
T cd01465 1 LNLVFVIDRSGSMDG------------------PKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAET---VLPATPV--- 56 (170)
T ss_pred CcEEEEEECCCCCCC------------------hhHHHHHHHHHHHHHhCCCCCEEEEEEecCCccE---EecCccc---
Confidence 489999999999941 1256777777788888888889999999986421 2222211
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCccccccccccCCCchhHHHHHHHHH
Q 042752 178 CNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSG--GQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIV 255 (415)
Q Consensus 178 c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~--~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV 255 (415)
...+.+++ .+.+++..|.|++..-++.+.+.+++.. ..--.+++||||.-++.. .+.++..+++.
T Consensus 57 -~~~~~l~~----~l~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~--------~~~~~~~~~~~ 123 (170)
T cd01465 57 -RDKAAILA----AIDRLTAGGSTAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGE--------TDPDELARLVA 123 (170)
T ss_pred -chHHHHHH----HHHcCCCCCCCCHHHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCC--------CCHHHHHHHHH
Confidence 12233332 2334556889999999999998886542 222557899999865311 12355566666
Q ss_pred HhccCCeEEEEEecccC-CCcccccc
Q 042752 256 QASEFPLSIILVGVGDG-PWDMMKEF 280 (415)
Q Consensus 256 ~AS~lPLSIIiVGVGd~-~F~~Me~L 280 (415)
.+.+..+-|..||||.. +...|+++
T Consensus 124 ~~~~~~v~i~~i~~g~~~~~~~l~~i 149 (170)
T cd01465 124 QKRESGITLSTLGFGDNYNEDLMEAI 149 (170)
T ss_pred HhhcCCeEEEEEEeCCCcCHHHHHHH
Confidence 66667888999999942 33444444
No 17
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.23 E-value=7.3e-06 Score=75.70 Aligned_cols=160 Identities=17% Similarity=0.248 Sum_probs=94.6
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCC--CC-ccccCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHD--QD-VFSFYPD 174 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d--~~-vFsf~~~ 174 (415)
.++++.||.|+||.... ....+..+.|...+..++..+.++..|-++.|+...... .. +++..+-
T Consensus 21 ~~vv~vlD~SgSM~~~~------------~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~ 88 (206)
T cd01456 21 PNVAIVLDNSGSMREVD------------GGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCL 88 (206)
T ss_pred CcEEEEEeCCCCCcCCC------------CCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCcccccccccccc
Confidence 59999999999996310 012355677777777777778778899999999854211 11 1111010
Q ss_pred CCCcCCHH-HHHHHHHhhCCcee-ecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccccccccCCCchhHHHHHH
Q 042752 175 DICCNGFE-EVLTQYREIVPSLR-LAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTID 252 (415)
Q Consensus 175 ~p~c~G~e-gVL~aYr~~l~~v~-LsGPT~FAPVI~~ai~iv~~s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTid 252 (415)
-....+.. .-.+...+.+..++ ..|-|+...-|+.+.+..+ .+.-..+|+||||.-++. . +..+...
T Consensus 89 ~~~~~~~~~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~--~~~~~~iillTDG~~~~~------~---~~~~~~~ 157 (206)
T cd01456 89 TAPVNGFPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD--PGRVNVVVLITDGEDTCG------P---DPCEVAR 157 (206)
T ss_pred ccccCCCCcccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC--CCCcceEEEEcCCCccCC------C---CHHHHHH
Confidence 00111210 01122233455565 7899999999999988875 233367799999986541 0 1223334
Q ss_pred HHHHh--ccCCeEEEEEecccC-CCcccccc
Q 042752 253 AIVQA--SEFPLSIILVGVGDG-PWDMMKEF 280 (415)
Q Consensus 253 aIV~A--S~lPLSIIiVGVGd~-~F~~Me~L 280 (415)
.+.+. ..-++.|.+||||.. +-+.|+++
T Consensus 158 ~~~~~~~~~~~i~i~~igiG~~~~~~~l~~i 188 (206)
T cd01456 158 ELAKRRTPAPPIKVNVIDFGGDADRAELEAI 188 (206)
T ss_pred HHHHhcCCCCCceEEEEEecCcccHHHHHHH
Confidence 44432 124788999999975 33334433
No 18
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=98.12 E-value=3.1e-05 Score=68.55 Aligned_cols=142 Identities=16% Similarity=0.287 Sum_probs=89.2
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCCccccCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFD---EDNLIPCFGFGDASTHDQDVFSFYPD 174 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD---~Dk~iP~fGFGa~~t~d~~vFsf~~~ 174 (415)
+++++.||-|+|+.. ..++.+...+..++..|+ .+-.+-++-|+..... ++++..
T Consensus 1 ~Dvv~vlD~SgSm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~---~~~~~~- 58 (164)
T cd01472 1 ADIVFLVDGSESIGL------------------SNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRT---EFYLNT- 58 (164)
T ss_pred CCEEEEEeCCCCCCH------------------HHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeE---EEecCC-
Confidence 378999999999951 123444444555555554 3457888999876422 334431
Q ss_pred CCCcCCHHHHHHHHHhhCCceee-cCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCccccccccccCCCchhHH
Q 042752 175 DICCNGFEEVLTQYREIVPSLRL-AGPTSFAPIIEMATTIVEKS-----GGQYHVLLIIADGQVTRSVDTQHGQLSSQEQ 248 (415)
Q Consensus 175 ~p~c~G~egVL~aYr~~l~~v~L-sGPT~FAPVI~~ai~iv~~s-----~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~ 248 (415)
....+.+++. +..++. +|.|+....++.|.+..... .+.=.++++||||.-++
T Consensus 59 ---~~~~~~~~~~----l~~l~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~-------------- 117 (164)
T cd01472 59 ---YRSKDDVLEA----VKNLRYIGGGTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQD-------------- 117 (164)
T ss_pred ---CCCHHHHHHH----HHhCcCCCCCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCc--------------
Confidence 1233444443 233443 78899999999999877542 23347789999996443
Q ss_pred HHHHHHHHhccCCeEEEEEecccCCCccccccCC
Q 042752 249 KTIDAIVQASEFPLSIILVGVGDGPWDMMKEFDD 282 (415)
Q Consensus 249 eTidaIV~AS~lPLSIIiVGVGd~~F~~Me~LDd 282 (415)
....+..+..+..+.|..||+|+.+.+.|+.+=+
T Consensus 118 ~~~~~~~~l~~~gv~i~~ig~g~~~~~~L~~ia~ 151 (164)
T cd01472 118 DVEEPAVELKQAGIEVFAVGVKNADEEELKQIAS 151 (164)
T ss_pred hHHHHHHHHHHCCCEEEEEECCcCCHHHHHHHHC
Confidence 1122333333467889999999987777776644
No 19
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=98.08 E-value=4.6e-05 Score=69.88 Aligned_cols=156 Identities=16% Similarity=0.222 Sum_probs=90.0
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDIC 177 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~ 177 (415)
+++++.||.|.|++. . ..+.-.+++..+...|..+..+-.+-++.|+..... +|.+....
T Consensus 1 ~di~~vlD~SgSM~~--------~-------~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~---~~~~~~~~-- 60 (198)
T cd01470 1 LNIYIALDASDSIGE--------E-------DFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKE---IVSIRDFN-- 60 (198)
T ss_pred CcEEEEEECCCCccH--------H-------HHHHHHHHHHHHHHHccccCCCceEEEEEecCCceE---EEecccCC--
Confidence 489999999999952 0 012224444444444444444567999999876432 34443211
Q ss_pred cCCHHHHHHHHHhhCCcee-ecCCCChHHHHHHHHHHHHhc----C----CceEEEEEEeCCccccccccccCCCchhHH
Q 042752 178 CNGFEEVLTQYREIVPSLR-LAGPTSFAPIIEMATTIVEKS----G----GQYHVLLIIADGQVTRSVDTQHGQLSSQEQ 248 (415)
Q Consensus 178 c~G~egVL~aYr~~l~~v~-LsGPT~FAPVI~~ai~iv~~s----~----~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~ 248 (415)
-...+.++++-+..-.... ..|-|++..-|+++.+..... . ..-.++++||||+-++- . + ..
T Consensus 61 ~~~~~~~~~~l~~~~~~~~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g------~-~--~~ 131 (198)
T cd01470 61 SNDADDVIKRLEDFNYDDHGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMG------G-S--PL 131 (198)
T ss_pred CCCHHHHHHHHHhCCcccccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCC------C-C--hh
Confidence 1123444443332222221 346799999998887654211 1 12378899999986531 1 1 23
Q ss_pred HHHHHHHHh----------ccCCeEEEEEecccC-CCccccccCC
Q 042752 249 KTIDAIVQA----------SEFPLSIILVGVGDG-PWDMMKEFDD 282 (415)
Q Consensus 249 eTidaIV~A----------S~lPLSIIiVGVGd~-~F~~Me~LDd 282 (415)
+..+.|.++ ....+.|..||||+. +.+.|+++=.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~v~i~~iGvG~~~~~~~L~~iA~ 176 (198)
T cd01470 132 PTVDKIKNLVYKNNKSDNPREDYLDVYVFGVGDDVNKEELNDLAS 176 (198)
T ss_pred HHHHHHHHHHhcccccccchhcceeEEEEecCcccCHHHHHHHhc
Confidence 344444443 234689999999964 7777777744
No 20
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=98.08 E-value=3.7e-05 Score=68.45 Aligned_cols=142 Identities=15% Similarity=0.233 Sum_probs=91.3
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCCccccCCCC
Q 042752 99 NLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFD---EDNLIPCFGFGDASTHDQDVFSFYPDD 175 (415)
Q Consensus 99 nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD---~Dk~iP~fGFGa~~t~d~~vFsf~~~~ 175 (415)
++++.+|-|.|++. ..++++...+-.++..++ ++..|-++.|+.... .+|.|+.
T Consensus 2 Dv~~vlD~S~Sm~~------------------~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~---~~~~l~~-- 58 (164)
T cd01482 2 DIVFLVDGSWSIGR------------------SNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPR---TEFDLNA-- 58 (164)
T ss_pred CEEEEEeCCCCcCh------------------hhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCee---EEEecCC--
Confidence 68999999999852 234555555555554443 567899999998742 2344431
Q ss_pred CCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCccccccccccCCCchhHHHH
Q 042752 176 ICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKS-----GGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKT 250 (415)
Q Consensus 176 p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s-----~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eT 250 (415)
....+.+++.-.++- ...|.|+...-|+.+.+...+. ...-.++||||||.-++ +.++.
T Consensus 59 --~~~~~~l~~~l~~~~---~~~g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~-----------~~~~~ 122 (164)
T cd01482 59 --YTSKEDVLAAIKNLP---YKGGNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQD-----------DVELP 122 (164)
T ss_pred --CCCHHHHHHHHHhCc---CCCCCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCc-----------hHHHH
Confidence 234555666544321 1478899999998887654221 12457889999998543 23333
Q ss_pred HHHHHHhccCCeEEEEEecccCCCccccccCC
Q 042752 251 IDAIVQASEFPLSIILVGVGDGPWDMMKEFDD 282 (415)
Q Consensus 251 idaIV~AS~lPLSIIiVGVGd~~F~~Me~LDd 282 (415)
.+.+. +..+-|..||+|+.+-..|+++-+
T Consensus 123 a~~lk---~~gi~i~~ig~g~~~~~~L~~ia~ 151 (164)
T cd01482 123 ARVLR---NLGVNVFAVGVKDADESELKMIAS 151 (164)
T ss_pred HHHHH---HCCCEEEEEecCcCCHHHHHHHhC
Confidence 44443 468899999999987666666654
No 21
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=98.07 E-value=2.9e-05 Score=83.39 Aligned_cols=145 Identities=21% Similarity=0.244 Sum_probs=95.5
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDIC 177 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~ 177 (415)
.++++.||.|+||. | +..++|-..+..+|....++-.|-++.|+..... ++.. ..
T Consensus 272 ~~vvfvlD~SgSM~--g----------------~~i~~ak~al~~~l~~L~~~d~~~ii~F~~~~~~---~~~~----~~ 326 (596)
T TIGR03788 272 RELVFVIDTSGSMA--G----------------ESIEQAKSALLLALDQLRPGDRFNIIQFDSDVTL---LFPV----PV 326 (596)
T ss_pred ceEEEEEECCCCCC--C----------------ccHHHHHHHHHHHHHhCCCCCEEEEEEECCcceE---eccc----cc
Confidence 58999999999995 1 2246677777777888888889999999887532 1111 00
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc-CCceEEEEEEeCCccccccccccCCCchhHHHHHHHHHH
Q 042752 178 CNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKS-GGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQ 256 (415)
Q Consensus 178 c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s-~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~ 256 (415)
..+ ++-++...+.+..++..|-|++...|+.|.+..... .+.--.+++||||.+.+ +.+.++.+..
T Consensus 327 ~~~-~~~~~~a~~~i~~l~a~GgT~l~~aL~~a~~~~~~~~~~~~~~iillTDG~~~~------------~~~~~~~~~~ 393 (596)
T TIGR03788 327 PAT-AHNLARARQFVAGLQADGGTEMAGALSAALRDDGPESSGALRQVVFLTDGAVGN------------EDALFQLIRT 393 (596)
T ss_pred cCC-HHHHHHHHHHHhhCCCCCCccHHHHHHHHHHhhcccCCCceeEEEEEeCCCCCC------------HHHHHHHHHH
Confidence 011 122233344455667789999999999998763222 22334568999999875 5677777765
Q ss_pred hccCCeEEEEEecccC-CCccccccC
Q 042752 257 ASEFPLSIILVGVGDG-PWDMMKEFD 281 (415)
Q Consensus 257 AS~lPLSIIiVGVGd~-~F~~Me~LD 281 (415)
+. -..-|..||||+. +...|+.+-
T Consensus 394 ~~-~~~ri~tvGiG~~~n~~lL~~lA 418 (596)
T TIGR03788 394 KL-GDSRLFTVGIGSAPNSYFMRKAA 418 (596)
T ss_pred hc-CCceEEEEEeCCCcCHHHHHHHH
Confidence 43 2456778899975 555566553
No 22
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=98.05 E-value=0.00012 Score=68.05 Aligned_cols=170 Identities=17% Similarity=0.248 Sum_probs=106.7
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHH-HHHHHHhhcccccCC---CCccceEeeCCCCCCCCCccccCCC
Q 042752 99 NLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYE-QAISIIGKTLSAFDE---DNLIPCFGFGDASTHDQDVFSFYPD 174 (415)
Q Consensus 99 nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~Yq-qAI~~Ig~iL~~YD~---Dk~iP~fGFGa~~t~d~~vFsf~~~ 174 (415)
.+++.||-|.|.+. ..++ +++..+-.++..|+- +-.+-+.=|++... ..+.|+.+
T Consensus 2 Di~fllD~S~Si~~------------------~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~---~~~~~~~~ 60 (192)
T cd01473 2 DLTLILDESASIGY------------------SNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNR---DVVPFSDE 60 (192)
T ss_pred cEEEEEeCCCcccH------------------HHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCce---eEEecCcc
Confidence 57899999998852 2234 355556666666664 45788888887642 23455432
Q ss_pred CCCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCC----ceEEEEEEeCCccccccccccCCCchhHHHH
Q 042752 175 DICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGG----QYHVLLIIADGQVTRSVDTQHGQLSSQEQKT 250 (415)
Q Consensus 175 ~p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~~----~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eT 250 (415)
. -..-++++++=++..+....+|-|+....|+.|.+......+ .--|||+||||.-++. ++...
T Consensus 61 ~--~~~~~~l~~~i~~l~~~~~~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~----------~~~~~ 128 (192)
T cd01473 61 E--RYDKNELLKKINDLKNSYRSGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSA----------SKKEL 128 (192)
T ss_pred c--ccCHHHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCc----------chhhH
Confidence 1 123455655544443333447889999999999887643221 2579999999987651 13455
Q ss_pred HHHHHHhccCCeEEEEEecccCCCccccccCCCC-CCCcccceecccchhhh
Q 042752 251 IDAIVQASEFPLSIILVGVGDGPWDMMKEFDDNI-PARAFDNFQFVNFTEIM 301 (415)
Q Consensus 251 idaIV~AS~lPLSIIiVGVGd~~F~~Me~LDd~~-~~R~rDNvQFV~f~di~ 301 (415)
.++...+-+.-+-|..||||..+-..++.+=+.- ......+|=..+|+++.
T Consensus 129 ~~~a~~lk~~gV~i~~vGiG~~~~~el~~ia~~~~~~~~~~~~~~~~f~~l~ 180 (192)
T cd01473 129 QDISLLYKEENVKLLVVGVGAASENKLKLLAGCDINNDNCPNVIKTEWNNLN 180 (192)
T ss_pred HHHHHHHHHCCCEEEEEEeccccHHHHHHhcCCCCCCCCCCeEEecchhhHH
Confidence 6777777889999999999998766665554421 11112244445666664
No 23
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=98.02 E-value=0.00011 Score=64.60 Aligned_cols=135 Identities=20% Similarity=0.297 Sum_probs=86.7
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceEeeCCCCCCCCCccccCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDE---DNLIPCFGFGDASTHDQDVFSFYPD 174 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~---Dk~iP~fGFGa~~t~d~~vFsf~~~ 174 (415)
+++++.+|-|.|+.. .++++...+..++..+.. .-.+-+.+|+.... ..-.|.+...
T Consensus 1 ldv~~llD~S~Sm~~-------------------~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~-~~~~~~l~~~ 60 (163)
T cd01476 1 LDLLFVLDSSGSVRG-------------------KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGR-QRVRFNLPKH 60 (163)
T ss_pred CCEEEEEeCCcchhh-------------------hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCc-eEEEecCCCC
Confidence 478999999999841 145555556666666654 67899999988532 1113444321
Q ss_pred CCCcCCHHHHHHHHHhhCCcee-ecCCCChHHHHHHHHHHHHhc----CCceEEEEEEeCCccccccccccCCCchhHHH
Q 042752 175 DICCNGFEEVLTQYREIVPSLR-LAGPTSFAPIIEMATTIVEKS----GGQYHVLLIIADGQVTRSVDTQHGQLSSQEQK 249 (415)
Q Consensus 175 ~p~c~G~egVL~aYr~~l~~v~-LsGPT~FAPVI~~ai~iv~~s----~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~e 249 (415)
...+.++++-. .++ .+|.|+....|+.+.+...+. .+.-.+++++|||.-++ +..+
T Consensus 61 ----~~~~~l~~~i~----~l~~~gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~-----------~~~~ 121 (163)
T cd01476 61 ----NDGEELLEKVD----NLRFIGGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHD-----------DPEK 121 (163)
T ss_pred ----CCHHHHHHHHH----hCccCCCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCC-----------chHH
Confidence 12334444332 233 467899999999999887522 12237899999997654 1344
Q ss_pred HHHHHHHhccCCeEEEEEecccCC
Q 042752 250 TIDAIVQASEFPLSIILVGVGDGP 273 (415)
Q Consensus 250 TidaIV~AS~lPLSIIiVGVGd~~ 273 (415)
..+.+.+ ..-+.|+.||+|+..
T Consensus 122 ~~~~l~~--~~~v~v~~vg~g~~~ 143 (163)
T cd01476 122 QARILRA--VPNIETFAVGTGDPG 143 (163)
T ss_pred HHHHHhh--cCCCEEEEEECCCcc
Confidence 4555655 466889999999863
No 24
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.95 E-value=9.3e-05 Score=65.92 Aligned_cols=140 Identities=17% Similarity=0.269 Sum_probs=83.8
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDIC 177 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~ 177 (415)
.+++++||.|.|+.... + + ..+..+.|...+...+...+ +..+-++.|++.... ++.+..+.
T Consensus 3 ~~vv~vlD~S~SM~~~~---~--------~-~~~r~~~a~~~~~~~~~~~~-~~~v~lv~f~~~~~~---~~~~~~~~-- 64 (180)
T cd01467 3 RDIMIALDVSGSMLAQD---F--------V-KPSRLEAAKEVLSDFIDRRE-NDRIGLVVFAGAAFT---QAPLTLDR-- 64 (180)
T ss_pred ceEEEEEECCccccccc---C--------C-CCCHHHHHHHHHHHHHHhCC-CCeEEEEEEcCCeee---ccCCCccH--
Confidence 58999999999996421 1 0 12444555555666666554 458899999875421 22221110
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccccccccCCCchhHHHHHHHHHHh
Q 042752 178 CNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQA 257 (415)
Q Consensus 178 c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~A 257 (415)
.-++.+++... .....|.|+...-|+.+.+........-.++++||||.-++ +...+ .+..+ .+
T Consensus 65 -~~~~~~l~~l~----~~~~~g~T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~------g~~~~--~~~~~---~~ 128 (180)
T cd01467 65 -ESLKELLEDIK----IGLAGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNA------GEIDP--ATAAE---LA 128 (180)
T ss_pred -HHHHHHHHHhh----hcccCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCC------CCCCH--HHHHH---HH
Confidence 01222333222 23457889998888888888765544457889999997543 11211 22232 33
Q ss_pred ccCCeEEEEEeccc
Q 042752 258 SEFPLSIILVGVGD 271 (415)
Q Consensus 258 S~lPLSIIiVGVGd 271 (415)
....+-|..||||+
T Consensus 129 ~~~gi~i~~i~ig~ 142 (180)
T cd01467 129 KNKGVRIYTIGVGK 142 (180)
T ss_pred HHCCCEEEEEEecC
Confidence 35677888888887
No 25
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=97.90 E-value=6.9e-05 Score=65.59 Aligned_cols=140 Identities=19% Similarity=0.351 Sum_probs=87.6
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCCc
Q 042752 99 NLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDICC 178 (415)
Q Consensus 99 nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~c 178 (415)
++++.||.+.|+... ...-..|++.+. +...+...|-++.||..... +.+.-..+
T Consensus 2 ~vvilvD~S~Sm~g~----------------~~~~k~al~~~l---~~L~~~d~fnii~f~~~~~~------~~~~~~~~ 56 (155)
T PF13768_consen 2 DVVILVDTSGSMSGE----------------KELVKDALRAIL---RSLPPGDRFNIIAFGSSVRP------LFPGLVPA 56 (155)
T ss_pred eEEEEEeCCCCCCCc----------------HHHHHHHHHHHH---HhCCCCCEEEEEEeCCEeeE------cchhHHHH
Confidence 689999999999520 123345555544 44555669999999986421 11110001
Q ss_pred --CCHHHHHHHHHhhCCceee-cCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccccccccCCCchhHHHHHHHHH
Q 042752 179 --NGFEEVLTQYREIVPSLRL-AGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIV 255 (415)
Q Consensus 179 --~G~egVL~aYr~~l~~v~L-sGPT~FAPVI~~ai~iv~~s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV 255 (415)
.+++.++ +-+..+.. .|.|+..+.++.|++... ..+.-..+++||||..++ ..+++.+.+.
T Consensus 57 ~~~~~~~a~----~~I~~~~~~~G~t~l~~aL~~a~~~~~-~~~~~~~IilltDG~~~~-----------~~~~i~~~v~ 120 (155)
T PF13768_consen 57 TEENRQEAL----QWIKSLEANSGGTDLLAALRAALALLQ-RPGCVRAIILLTDGQPVS-----------GEEEILDLVR 120 (155)
T ss_pred hHHHHHHHH----HHHHHhcccCCCccHHHHHHHHHHhcc-cCCCccEEEEEEeccCCC-----------CHHHHHHHHH
Confidence 1233333 33344666 899999999998887642 223456669999999643 1467777776
Q ss_pred HhccCCeEEEEEeccc-CCCcccccc
Q 042752 256 QASEFPLSIILVGVGD-GPWDMMKEF 280 (415)
Q Consensus 256 ~AS~lPLSIIiVGVGd-~~F~~Me~L 280 (415)
.+. -.+-|..+|+|. .+...|++|
T Consensus 121 ~~~-~~~~i~~~~~g~~~~~~~L~~L 145 (155)
T PF13768_consen 121 RAR-GHIRIFTFGIGSDADADFLREL 145 (155)
T ss_pred hcC-CCceEEEEEECChhHHHHHHHH
Confidence 643 557788899997 455555555
No 26
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.83 E-value=0.00028 Score=64.49 Aligned_cols=146 Identities=16% Similarity=0.245 Sum_probs=92.4
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccccc---------CCCCccceEeeCCCCCCCCCc
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAF---------DEDNLIPCFGFGDASTHDQDV 168 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~Y---------D~Dk~iP~fGFGa~~t~d~~v 168 (415)
+++++.||-|.|++. ..++.+.+.+-.++..+ ..+-.+-++.|+..... +
T Consensus 3 ~dvv~vlD~S~Sm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~---~ 61 (186)
T cd01480 3 VDITFVLDSSESVGL------------------QNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEV---E 61 (186)
T ss_pred eeEEEEEeCCCccch------------------hhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCcee---e
Confidence 689999999999952 22444444444444444 22357889999876432 3
Q ss_pred cccCCCCCCcCCHHHHHHHHHhhCCcee-ecCCCChHHHHHHHHHHHHhc--CCceEEEEEEeCCccccccccccCCCch
Q 042752 169 FSFYPDDICCNGFEEVLTQYREIVPSLR-LAGPTSFAPIIEMATTIVEKS--GGQYHVLLIIADGQVTRSVDTQHGQLSS 245 (415)
Q Consensus 169 Fsf~~~~p~c~G~egVL~aYr~~l~~v~-LsGPT~FAPVI~~ai~iv~~s--~~~Y~VLLIITDG~ItD~~d~~~~~~~~ 245 (415)
|.+... -...+.+++ .+..++ .+|.|+...-|+.|.+..... .+.=.++++||||.-++..
T Consensus 62 ~~l~~~---~~~~~~l~~----~i~~l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~--------- 125 (186)
T cd01480 62 AGFLRD---IRNYTSLKE----AVDNLEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSP--------- 125 (186)
T ss_pred Eecccc---cCCHHHHHH----HHHhCccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCc---------
Confidence 444321 123344433 334444 478999999999999887641 2334788999999764310
Q ss_pred hHHHHHHHHHHhccCCeEEEEEecccCCCccccccC
Q 042752 246 QEQKTIDAIVQASEFPLSIILVGVGDGPWDMMKEFD 281 (415)
Q Consensus 246 d~~eTidaIV~AS~lPLSIIiVGVGd~~F~~Me~LD 281 (415)
.....+++.++.+..+.|..||||..+-..|+++=
T Consensus 126 -~~~~~~~~~~~~~~gi~i~~vgig~~~~~~L~~IA 160 (186)
T cd01480 126 -DGGIEKAVNEADHLGIKIFFVAVGSQNEEPLSRIA 160 (186)
T ss_pred -chhHHHHHHHHHHCCCEEEEEecCccchHHHHHHH
Confidence 12334555666688999999999986555555443
No 27
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=97.77 E-value=0.00012 Score=66.57 Aligned_cols=146 Identities=15% Similarity=0.210 Sum_probs=87.5
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC-CCCccceEeeCCCCCCCCCccccCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFD-EDNLIPCFGFGDASTHDQDVFSFYPDDI 176 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD-~Dk~iP~fGFGa~~t~d~~vFsf~~~~p 176 (415)
+++++.||-|+|++.. +.+++..+-.++..|+ .+-.+-++.|+.... .+|+|....
T Consensus 5 ~Dvv~llD~SgSm~~~-------------------~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~~---~~~~l~~~~- 61 (185)
T cd01474 5 FDLYFVLDKSGSVAAN-------------------WIEIYDFVEQLVDRFNSPGLRFSFITFSTRAT---KILPLTDDS- 61 (185)
T ss_pred eeEEEEEeCcCchhhh-------------------HHHHHHHHHHHHHHcCCCCcEEEEEEecCCce---EEEeccccH-
Confidence 6899999999999520 1112222333333333 356899999987642 255654321
Q ss_pred CcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHh--cCCce--EEEEEEeCCccccccccccCCCchhHHHHHH
Q 042752 177 CCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEK--SGGQY--HVLLIIADGQVTRSVDTQHGQLSSQEQKTID 252 (415)
Q Consensus 177 ~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~--s~~~Y--~VLLIITDG~ItD~~d~~~~~~~~d~~eTid 252 (415)
+.+.++-. .+..+...|.|+...-|+.|.+.+.. .++.. .++++||||.-++.. ...+.+
T Consensus 62 -----~~~~~~l~-~l~~~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~----------~~~~~~ 125 (185)
T cd01474 62 -----SAIIKGLE-VLKKVTPSGQTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNG----------HKYPEH 125 (185)
T ss_pred -----HHHHHHHH-HHhccCCCCCCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCC----------CcchHH
Confidence 12222211 13445557899999999999887632 22222 788999999874310 112333
Q ss_pred HHHHhccCCeEEEEEecccCCCccccccCC
Q 042752 253 AIVQASEFPLSIILVGVGDGPWDMMKEFDD 282 (415)
Q Consensus 253 aIV~AS~lPLSIIiVGVGd~~F~~Me~LDd 282 (415)
+...+-+.-+-|..||||+.+...|+.+=+
T Consensus 126 ~a~~l~~~gv~i~~vgv~~~~~~~L~~iA~ 155 (185)
T cd01474 126 EAKLSRKLGAIVYCVGVTDFLKSQLINIAD 155 (185)
T ss_pred HHHHHHHcCCEEEEEeechhhHHHHHHHhC
Confidence 334444567789999998877777776644
No 28
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.77 E-value=0.00052 Score=59.88 Aligned_cols=133 Identities=14% Similarity=0.122 Sum_probs=78.0
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCCc
Q 042752 99 NLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDICC 178 (415)
Q Consensus 99 nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~c 178 (415)
.+++.||.|+|+..+ + .-.-..++..++..+.. .+..+-++.|+... ....+. .-
T Consensus 2 ~v~illD~SgSM~~~-------k--------~~~a~~~~~~l~~~~~~--~~~~v~li~F~~~~----~~~~~~----~~ 56 (152)
T cd01462 2 PVILLVDQSGSMYGA-------P--------EEVAKAVALALLRIALA--ENRDTYLILFDSEF----QTKIVD----KT 56 (152)
T ss_pred CEEEEEECCCCCCCC-------H--------HHHHHHHHHHHHHHHHH--cCCcEEEEEeCCCc----eEEecC----Cc
Confidence 578999999999520 0 11123444445554444 24478899998771 111111 11
Q ss_pred CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCc-cccccccccCCCchhHHHHHHHHHHh
Q 042752 179 NGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQ-VTRSVDTQHGQLSSQEQKTIDAIVQA 257 (415)
Q Consensus 179 ~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~~~Y~VLLIITDG~-ItD~~d~~~~~~~~d~~eTidaIV~A 257 (415)
..+..+++.. ..+...|.|++.+.++.+.+..++....=.+++|||||. -.+ ..+..++...+
T Consensus 57 ~~~~~~~~~l----~~~~~~ggT~l~~al~~a~~~l~~~~~~~~~ivliTDG~~~~~------------~~~~~~~~~~~ 120 (152)
T cd01462 57 DDLEEPVEFL----SGVQLGGGTDINKALRYALELIERRDPRKADIVLITDGYEGGV------------SDELLREVELK 120 (152)
T ss_pred ccHHHHHHHH----hcCCCCCCcCHHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC------------CHHHHHHHHHH
Confidence 2445555433 345568999999999999998876533336789999995 221 12332223333
Q ss_pred ccCCeEEEEEecccC
Q 042752 258 SEFPLSIILVGVGDG 272 (415)
Q Consensus 258 S~lPLSIIiVGVGd~ 272 (415)
....+=|..||||+.
T Consensus 121 ~~~~~~v~~~~~g~~ 135 (152)
T cd01462 121 RSRVARFVALALGDH 135 (152)
T ss_pred HhcCcEEEEEEecCC
Confidence 344566777777763
No 29
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=97.75 E-value=0.00017 Score=62.96 Aligned_cols=112 Identities=17% Similarity=0.189 Sum_probs=72.2
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCCc
Q 042752 99 NLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDICC 178 (415)
Q Consensus 99 nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~c 178 (415)
++++.||-|.|++.. ..+...+++..+..-+...+..-.+-+.-||.... .+|+|+..
T Consensus 1 DivflvD~S~sm~~~---------------~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~---~~~~~~~~---- 58 (178)
T PF00092_consen 1 DIVFLVDTSGSMSGD---------------NFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSAR---VLFSLTDY---- 58 (178)
T ss_dssp EEEEEEE-STTSCHH---------------HHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEE---EEEETTSH----
T ss_pred CEEEEEeCCCCCchH---------------HHHHHHHHHHHHHHhhhccccccccceeeeecccc---cccccccc----
Confidence 589999999999520 01233444444444444667777889999988754 34555322
Q ss_pred CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCcccc
Q 042752 179 NGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKS-----GGQYHVLLIIADGQVTR 234 (415)
Q Consensus 179 ~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s-----~~~Y~VLLIITDG~ItD 234 (415)
...+.+++.= .......+|.|+++..|+.|.+..... .....++++||||..++
T Consensus 59 ~~~~~~~~~i--~~~~~~~~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~ 117 (178)
T PF00092_consen 59 QSKNDLLNAI--NDSIPSSGGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSND 117 (178)
T ss_dssp SSHHHHHHHH--HTTGGCCBSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSS
T ss_pred cccccccccc--cccccccchhhhHHHHHhhhhhcccccccccccccccceEEEEeecccC
Confidence 2334444432 133445679999999999999986543 45689999999999886
No 30
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=97.73 E-value=0.00028 Score=66.42 Aligned_cols=141 Identities=16% Similarity=0.256 Sum_probs=90.4
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceEeeCCCCCCCCCccccCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDE---DNLIPCFGFGDASTHDQDVFSFYPD 174 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~---Dk~iP~fGFGa~~t~d~~vFsf~~~ 174 (415)
+++++.||-|+|++ ...++++...+..++..++. .-.+-++.|+.... .+|+|+..
T Consensus 3 ~DlvfllD~S~Sm~------------------~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~---~~~~l~~~ 61 (224)
T cd01475 3 TDLVFLIDSSRSVR------------------PENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVK---QEFPLGRF 61 (224)
T ss_pred ccEEEEEeCCCCCC------------------HHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCcee---EEeccccc
Confidence 58999999999984 23578888888888888764 34799999998753 25666432
Q ss_pred CCCcCCHHHHHHHHHhhCCcee-ecCCCChHHHHHHHHHHHH-h-cC---Cc---eEEEEEEeCCccccccccccCCCch
Q 042752 175 DICCNGFEEVLTQYREIVPSLR-LAGPTSFAPIIEMATTIVE-K-SG---GQ---YHVLLIIADGQVTRSVDTQHGQLSS 245 (415)
Q Consensus 175 ~p~c~G~egVL~aYr~~l~~v~-LsGPT~FAPVI~~ai~iv~-~-s~---~~---Y~VLLIITDG~ItD~~d~~~~~~~~ 245 (415)
...+++.++-. .++ +.|.|+-.--|+.+.+.+- + .+ +. =.|+|+||||.-.|
T Consensus 62 ----~~~~~l~~~i~----~i~~~~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~----------- 122 (224)
T cd01475 62 ----KSKADLKRAVR----RMEYLETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQD----------- 122 (224)
T ss_pred ----CCHHHHHHHHH----hCcCCCCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCcc-----------
Confidence 12344544433 232 3566777767777765431 1 11 11 37899999997654
Q ss_pred hHHHHHHHHHHhccCCeEEEEEecccCCCccccccC
Q 042752 246 QEQKTIDAIVQASEFPLSIILVGVGDGPWDMMKEFD 281 (415)
Q Consensus 246 d~~eTidaIV~AS~lPLSIIiVGVGd~~F~~Me~LD 281 (415)
+.++..+. +-..-+.|..||||+.+.+.|+++=
T Consensus 123 ~~~~~a~~---lk~~gv~i~~VgvG~~~~~~L~~ia 155 (224)
T cd01475 123 DVSEVAAK---ARALGIEMFAVGVGRADEEELREIA 155 (224)
T ss_pred cHHHHHHH---HHHCCcEEEEEeCCcCCHHHHHHHh
Confidence 23333333 3355688999999987665555553
No 31
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.72 E-value=0.00041 Score=75.04 Aligned_cols=142 Identities=12% Similarity=0.216 Sum_probs=95.0
Q ss_pred eeceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCC-Ccc--ceEeeCCCCCCCCCccccCC
Q 042752 97 SSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDED-NLI--PCFGFGDASTHDQDVFSFYP 173 (415)
Q Consensus 97 s~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~D-k~i--P~fGFGa~~t~d~~vFsf~~ 173 (415)
.+++++.||-|+|++. .|-.++|+..+..++..++.. ..+ -+..|+.... .+|.+..
T Consensus 42 ~lDIvFLLD~SgSMg~-----------------~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r---~vfpL~s 101 (576)
T PTZ00441 42 EVDLYLLVDGSGSIGY-----------------HNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTT---ELIRLGS 101 (576)
T ss_pred CceEEEEEeCCCccCC-----------------ccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCce---EEEecCC
Confidence 3799999999999962 234567777777777777542 223 3357766532 2455532
Q ss_pred CCCCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC---CceEEEEEEeCCccccccccccCCCchhHHHH
Q 042752 174 DDICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSG---GQYHVLLIIADGQVTRSVDTQHGQLSSQEQKT 250 (415)
Q Consensus 174 ~~p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~---~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eT 250 (415)
.. -...+.++.+-+++...+..+|-|++...|+.|.+...+.+ ..-.|+|+||||.-++ ..++
T Consensus 102 ~~--s~Dk~~aL~~I~sL~~~~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns------------~~dv 167 (576)
T PTZ00441 102 GA--SKDKEQALIIVKSLRKTYLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNS------------KYRA 167 (576)
T ss_pred Cc--cccHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCC------------cccH
Confidence 21 12335666666666666667899999999999888765431 1236889999998543 1345
Q ss_pred HHHHHHhccCCeEEEEEecccC
Q 042752 251 IDAIVQASEFPLSIILVGVGDG 272 (415)
Q Consensus 251 idaIV~AS~lPLSIIiVGVGd~ 272 (415)
++++......-+-|+.||||.+
T Consensus 168 leaAq~LR~~GVeI~vIGVG~g 189 (576)
T PTZ00441 168 LEESRKLKDRNVKLAVIGIGQG 189 (576)
T ss_pred HHHHHHHHHCCCEEEEEEeCCC
Confidence 5566666677899999999974
No 32
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=97.67 E-value=0.00044 Score=63.81 Aligned_cols=138 Identities=12% Similarity=0.171 Sum_probs=88.5
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceEeeCCCCCCCCCccccCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDE---DNLIPCFGFGDASTHDQDVFSFYPD 174 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~---Dk~iP~fGFGa~~t~d~~vFsf~~~ 174 (415)
-+++|+||.|.|+..+ +-.+|..+.|-..+...+..+.+ ...+-++.|++...+- +.++..|
T Consensus 4 r~ivi~lD~S~SM~a~-------------D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~--~~PlT~D 68 (183)
T cd01453 4 RHLIIVIDCSRSMEEQ-------------DLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEK--LTDLTGN 68 (183)
T ss_pred eEEEEEEECcHHHhcC-------------CCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEE--EECCCCC
Confidence 5899999999999632 11478999999999999987743 3578888896543321 2233221
Q ss_pred CCCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCC--ceEEEEEEeCCccccccccccCCCchhHHHHHH
Q 042752 175 DICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGG--QYHVLLIIADGQVTRSVDTQHGQLSSQEQKTID 252 (415)
Q Consensus 175 ~p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~~--~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTid 252 (415)
.+.++..-+.. +...|-|++...|+.|.+..++... +=.|+||++||.-.+ ..+..+
T Consensus 69 ------~~~~~~~L~~~---~~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~------------~~~~~~ 127 (183)
T cd01453 69 ------PRKHIQALKTA---RECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCD------------PGNIYE 127 (183)
T ss_pred ------HHHHHHHhhcc---cCCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCC------------hhhHHH
Confidence 22333332222 2446779999999999988865322 224788899986543 112223
Q ss_pred HHHHhccCCeEEEEEeccc
Q 042752 253 AIVQASEFPLSIILVGVGD 271 (415)
Q Consensus 253 aIV~AS~lPLSIIiVGVGd 271 (415)
++..+.+..+-|-+||||.
T Consensus 128 ~~~~l~~~~I~v~~IgiG~ 146 (183)
T cd01453 128 TIDKLKKENIRVSVIGLSA 146 (183)
T ss_pred HHHHHHHcCcEEEEEEech
Confidence 4444555668888899985
No 33
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=97.58 E-value=0.00093 Score=66.15 Aligned_cols=138 Identities=20% Similarity=0.319 Sum_probs=91.4
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDIC 177 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~ 177 (415)
.++++|||-|+||..++ + .++..| |+..|.+.+..... ..+-+.+||.... .+.+|+.+ +
T Consensus 61 ~qIvlaID~S~SM~~~~-------~------~~~ale-ak~lIs~al~~Le~-g~vgVv~Fg~~~~---~v~Plt~d--~ 120 (266)
T cd01460 61 YQILIAIDDSKSMSENN-------S------KKLALE-SLCLVSKALTLLEV-GQLGVCSFGEDVQ---ILHPFDEQ--F 120 (266)
T ss_pred ceEEEEEecchhccccc-------c------cccHHH-HHHHHHHHHHhCcC-CcEEEEEeCCCce---EeCCCCCC--c
Confidence 68999999999996421 1 246665 88888888887775 6899999998642 13334221 1
Q ss_pred cCCHHHHHHHHHhhCCceeec-CCCChHHHHHHHHHHHHhcC-----C-ceEEEEEEeCCccccccccccCCCchhHHHH
Q 042752 178 CNGFEEVLTQYREIVPSLRLA-GPTSFAPIIEMATTIVEKSG-----G-QYHVLLIIADGQVTRSVDTQHGQLSSQEQKT 250 (415)
Q Consensus 178 c~G~egVL~aYr~~l~~v~Ls-GPT~FAPVI~~ai~iv~~s~-----~-~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eT 250 (415)
- . ++.-+++....+. +-|+.+..|+.+++..++.. + .-.++|||+||...+. +...
T Consensus 121 ~-~-----~a~~~~l~~~~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~-----------e~~~ 183 (266)
T cd01460 121 S-S-----QSGPRILNQFTFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFS-----------EGAQ 183 (266)
T ss_pred h-h-----hHHHHHhCcccCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccC-----------ccHH
Confidence 1 1 1222233322222 45899999999999876441 1 1278999999984331 2333
Q ss_pred HHHHHHhccCCeEEEEEecccC
Q 042752 251 IDAIVQASEFPLSIILVGVGDG 272 (415)
Q Consensus 251 idaIV~AS~lPLSIIiVGVGd~ 272 (415)
..++.+|.+..+.+++|||=+.
T Consensus 184 ~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 184 KVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred HHHHHHHHHcCCeEEEEEEcCC
Confidence 4557888888999999999765
No 34
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=97.51 E-value=0.0013 Score=61.62 Aligned_cols=139 Identities=12% Similarity=0.167 Sum_probs=95.2
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---------CCccceEeeCCCCCCCCCc
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDE---------DNLIPCFGFGDASTHDQDV 168 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~---------Dk~iP~fGFGa~~t~d~~v 168 (415)
+.++++||-|.|++ .+.++++..-|..++..++. .-.+-+.-|+.... ..
T Consensus 20 ~DivfvlD~S~Sm~------------------~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~---~~ 78 (193)
T cd01477 20 LDIVFVVDNSKGMT------------------QGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNAT---VV 78 (193)
T ss_pred eeEEEEEeCCCCcc------------------hhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceE---EE
Confidence 68999999999985 23478887777777777765 25777888877542 23
Q ss_pred cccCCCCCCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCccccccccccCCC
Q 042752 169 FSFYPDDICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKS-----GGQYHVLLIIADGQVTRSVDTQHGQL 243 (415)
Q Consensus 169 Fsf~~~~p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s-----~~~Y~VLLIITDG~ItD~~d~~~~~~ 243 (415)
|+|+ + ....++++++.+..++.+...|-|+...-|+.|.+..... .+.-.|+++||||.-...
T Consensus 79 ~~L~--d--~~~~~~~~~ai~~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~-------- 146 (193)
T cd01477 79 ADLN--D--LQSFDDLYSQIQGSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEG-------- 146 (193)
T ss_pred Eecc--c--ccCHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCC--------
Confidence 5553 1 2356778877776566665667899999999998887642 123578899999854321
Q ss_pred chhHHHHHHHHHHhccCCeEEEEEecccC
Q 042752 244 SSQEQKTIDAIVQASEFPLSIILVGVGDG 272 (415)
Q Consensus 244 ~~d~~eTidaIV~AS~lPLSIIiVGVGd~ 272 (415)
.....++..++.+.-+-|.-||||..
T Consensus 147 ---~~~~~~~a~~l~~~GI~i~tVGiG~~ 172 (193)
T cd01477 147 ---SNDPRPIAARLKSTGIAIITVAFTQD 172 (193)
T ss_pred ---CCCHHHHHHHHHHCCCEEEEEEeCCC
Confidence 01123334445577999999999974
No 35
>PRK13685 hypothetical protein; Provisional
Probab=97.51 E-value=0.0014 Score=65.55 Aligned_cols=143 Identities=16% Similarity=0.147 Sum_probs=92.1
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDIC 177 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~ 177 (415)
.+++++||-|+||..+ +..+|..+.|-..+..++..+..+..+-++.|++...- +..+.
T Consensus 89 ~~vvlvlD~S~SM~~~-------------D~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~~---~~p~t----- 147 (326)
T PRK13685 89 AVVMLVIDVSQSMRAT-------------DVEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTATV---LVSPT----- 147 (326)
T ss_pred ceEEEEEECCccccCC-------------CCCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCceee---cCCCC-----
Confidence 4799999999999632 12357888898898999999877778999999986421 21221
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc--------CCceEEEEEEeCCccccccccccCCCchhHHH
Q 042752 178 CNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKS--------GGQYHVLLIIADGQVTRSVDTQHGQLSSQEQK 249 (415)
Q Consensus 178 c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s--------~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~e 249 (415)
...+.+ . ..+..+...|-|+...-|..|.+.+++. +..--++|+||||.-+...+ +.+...
T Consensus 148 -~d~~~l-~---~~l~~l~~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~------~~~~~~ 216 (326)
T PRK13685 148 -TNREAT-K---NAIDKLQLADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTN------PDNPRG 216 (326)
T ss_pred -CCHHHH-H---HHHHhCCCCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCC------CCCccc
Confidence 222222 2 2334455667788888888888776531 11234568999997543100 000112
Q ss_pred HHHHHHHhccCCeEEEEEecccC
Q 042752 250 TIDAIVQASEFPLSIILVGVGDG 272 (415)
Q Consensus 250 TidaIV~AS~lPLSIIiVGVGd~ 272 (415)
..++...|.+..+.|-.||||..
T Consensus 217 ~~~aa~~a~~~gi~i~~Ig~G~~ 239 (326)
T PRK13685 217 AYTAARTAKDQGVPISTISFGTP 239 (326)
T ss_pred HHHHHHHHHHcCCeEEEEEECCC
Confidence 23455666677888888999863
No 36
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=97.50 E-value=0.0018 Score=58.70 Aligned_cols=145 Identities=16% Similarity=0.230 Sum_probs=88.6
Q ss_pred eEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc-ccCCCCccceEeeCCCCCCCCCccccCCCCCCc
Q 042752 100 LIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLS-AFDEDNLIPCFGFGDASTHDQDVFSFYPDDICC 178 (415)
Q Consensus 100 liVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~-~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~c 178 (415)
+++.||.|+|+.. .+..+.|...+..++. .+..+..+-++.|.+...+ .++.+ .
T Consensus 3 v~lvlD~SgSM~~-----------------~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~--~~~~~------t 57 (178)
T cd01451 3 VIFVVDASGSMAA-----------------RHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAE--VLLPP------T 57 (178)
T ss_pred EEEEEECCccCCC-----------------ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCce--EEeCC------C
Confidence 6789999999952 1345666666666553 3445668999999764211 12222 1
Q ss_pred CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHH-Hhc--CCceEEEEEEeCCccccccccccCCCchhHHHHHHHHH
Q 042752 179 NGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIV-EKS--GGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIV 255 (415)
Q Consensus 179 ~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv-~~s--~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV 255 (415)
.+.+.+.+ .+..+...|-|++..-++.+.+.+ ++. .+.-.++++||||.-+... ++......+++.
T Consensus 58 ~~~~~~~~----~l~~l~~~G~T~l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~-------~~~~~~~~~~~~ 126 (178)
T cd01451 58 RSVELAKR----RLARLPTGGGTPLAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGP-------DPTADRALAAAR 126 (178)
T ss_pred CCHHHHHH----HHHhCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCC-------CchhHHHHHHHH
Confidence 23344433 344466789999999999999887 222 1223788999999765311 111122255555
Q ss_pred HhccCCeEEEEEecccCCC--cccccc
Q 042752 256 QASEFPLSIILVGVGDGPW--DMMKEF 280 (415)
Q Consensus 256 ~AS~lPLSIIiVGVGd~~F--~~Me~L 280 (415)
++....+.|+.||+|.... +.|++|
T Consensus 127 ~l~~~gi~v~~I~~~~~~~~~~~l~~i 153 (178)
T cd01451 127 KLRARGISALVIDTEGRPVRRGLAKDL 153 (178)
T ss_pred HHHhcCCcEEEEeCCCCccCccHHHHH
Confidence 5667788889999987532 334444
No 37
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=97.47 E-value=0.0016 Score=59.11 Aligned_cols=135 Identities=20% Similarity=0.283 Sum_probs=90.9
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceEeeCCCCCCCCCccccCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDE---DNLIPCFGFGDASTHDQDVFSFYPD 174 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~---Dk~iP~fGFGa~~t~d~~vFsf~~~ 174 (415)
+.+++.||-|.|.+ ...++++..-+..++..++. .-.+-+..|+.... ..|+|..
T Consensus 1 ~Di~fvlD~S~S~~------------------~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~---~~~~l~~- 58 (177)
T cd01469 1 MDIVFVLDGSGSIY------------------PDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFR---TEFTLNE- 58 (177)
T ss_pred CcEEEEEeCCCCCC------------------HHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCcee---EEEecCc-
Confidence 36899999998874 24678888888888888876 45788899987642 2355531
Q ss_pred CCCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHH--HhcC---CceEEEEEEeCCccccccccccCCCchhHHH
Q 042752 175 DICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIV--EKSG---GQYHVLLIIADGQVTRSVDTQHGQLSSQEQK 249 (415)
Q Consensus 175 ~p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv--~~s~---~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~e 249 (415)
-...+.++++=+. ++ .+.|.|+...-|+.|.+.+ ...+ +.-.|+|+||||.-++.. .
T Consensus 59 ---~~~~~~~~~~i~~-~~--~~~g~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~------------~ 120 (177)
T cd01469 59 ---YRTKEEPLSLVKH-IS--QLLGLTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDP------------L 120 (177)
T ss_pred ---cCCHHHHHHHHHh-Cc--cCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCcc------------c
Confidence 1233455544322 22 3578899999999998875 2221 235788999999987621 2
Q ss_pred HHHHHHHhccCCeEEEEEecccC
Q 042752 250 TIDAIVQASEFPLSIILVGVGDG 272 (415)
Q Consensus 250 TidaIV~AS~lPLSIIiVGVGd~ 272 (415)
+.+++..+-..-+-|.-||||+.
T Consensus 121 ~~~~~~~~k~~gv~v~~Vgvg~~ 143 (177)
T cd01469 121 LKDVIPQAEREGIIRYAIGVGGH 143 (177)
T ss_pred cHHHHHHHHHCCcEEEEEEeccc
Confidence 23445555567889999999985
No 38
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=97.32 E-value=0.001 Score=58.51 Aligned_cols=121 Identities=18% Similarity=0.294 Sum_probs=77.9
Q ss_pred eEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCCcC
Q 042752 100 LIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDICCN 179 (415)
Q Consensus 100 liVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~c~ 179 (415)
++||||-|+|.. .....+++..|..+++.+ ...+-++=|-++......+ .
T Consensus 1 i~vaiDtSGSis------------------~~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~~----------~ 50 (126)
T PF09967_consen 1 IVVAIDTSGSIS------------------DEELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQVF----------R 50 (126)
T ss_pred CEEEEECCCCCC------------------HHHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeEE----------e
Confidence 579999999984 246788999999999999 3447777775554322211 1
Q ss_pred CHHHHHHHHHhhCCce--eecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccccccccCCCchhHHHHHHHHHHh
Q 042752 180 GFEEVLTQYREIVPSL--RLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQA 257 (415)
Q Consensus 180 G~egVL~aYr~~l~~v--~LsGPT~FAPVI~~ai~iv~~s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~A 257 (415)
. ....+..+ .=.|-|+|.|+++.+.+. .....++|+||||..... ..+
T Consensus 51 ~-------~~~~~~~~~~~GgGGTdf~pvf~~~~~~----~~~~~~vi~fTDg~~~~~-------------------~~~ 100 (126)
T PF09967_consen 51 S-------LEDELRDIKLKGGGGTDFRPVFEYLEEN----RPRPSVVIYFTDGEGWPP-------------------EEA 100 (126)
T ss_pred c-------ccccccccccCCCCCCcchHHHHHHHhc----CCCCCEEEEEeCCCCCCC-------------------CCC
Confidence 1 01111222 235789999999988643 344677889999987531 012
Q ss_pred ccCCeEEEEEe--cccCCCcccccc
Q 042752 258 SEFPLSIILVG--VGDGPWDMMKEF 280 (415)
Q Consensus 258 S~lPLSIIiVG--VGd~~F~~Me~L 280 (415)
=.+|+=|++.| -...||+..-.|
T Consensus 101 P~~~vlWvl~~~~~~~~P~G~vv~l 125 (126)
T PF09967_consen 101 PPYPVLWVLPGNRNPKAPFGRVVRL 125 (126)
T ss_pred CCCcEEEEEeCCCCCCCCCEEEEEe
Confidence 27899999999 233456654443
No 39
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.17 E-value=0.0049 Score=55.96 Aligned_cols=141 Identities=16% Similarity=0.262 Sum_probs=89.8
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCCccccCCCC
Q 042752 99 NLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFD---EDNLIPCFGFGDASTHDQDVFSFYPDD 175 (415)
Q Consensus 99 nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD---~Dk~iP~fGFGa~~t~d~~vFsf~~~~ 175 (415)
.+++.||-|.|.+ ...++++..-|.+++..|+ +.-.+-+.-|+.... ..|.|+..
T Consensus 2 DivfllD~S~Si~------------------~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~---~~~~l~~~- 59 (165)
T cd01481 2 DIVFLIDGSDNVG------------------SGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPR---PEFYLNTH- 59 (165)
T ss_pred CEEEEEeCCCCcC------------------HHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCee---EEEecccc-
Confidence 5789999988874 3466788888888888887 456788888887642 24566422
Q ss_pred CCcCCHHHHHHHHHhhCCceee-cC-CCChHHHHHHHHHHHHh-c-C-----CceEEEEEEeCCccccccccccCCCchh
Q 042752 176 ICCNGFEEVLTQYREIVPSLRL-AG-PTSFAPIIEMATTIVEK-S-G-----GQYHVLLIIADGQVTRSVDTQHGQLSSQ 246 (415)
Q Consensus 176 p~c~G~egVL~aYr~~l~~v~L-sG-PT~FAPVI~~ai~iv~~-s-~-----~~Y~VLLIITDG~ItD~~d~~~~~~~~d 246 (415)
...++++++-.+ ++. .| .|+-...|+.+.+.+-. . + +--.|||+||||.-.| +
T Consensus 60 ---~~~~~l~~~i~~----i~~~~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d-----------~ 121 (165)
T cd01481 60 ---STKADVLGAVRR----LRLRGGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQD-----------D 121 (165)
T ss_pred ---CCHHHHHHHHHh----cccCCCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcc-----------h
Confidence 134566665433 332 45 47888888888765421 1 1 2347899999998654 2
Q ss_pred HHHHHHHHHHhccCCeEEEEEecccCCCccccccCC
Q 042752 247 EQKTIDAIVQASEFPLSIILVGVGDGPWDMMKEFDD 282 (415)
Q Consensus 247 ~~eTidaIV~AS~lPLSIIiVGVGd~~F~~Me~LDd 282 (415)
..+..+.+. +.-+-|+.||+|..+.+.|+.+-+
T Consensus 122 ~~~~a~~lr---~~gv~i~~vG~~~~~~~eL~~ias 154 (165)
T cd01481 122 VERPAVALK---RAGIVPFAIGARNADLAELQQIAF 154 (165)
T ss_pred HHHHHHHHH---HCCcEEEEEeCCcCCHHHHHHHhC
Confidence 334444444 445777778888656555555543
No 40
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=97.13 E-value=0.0042 Score=59.03 Aligned_cols=155 Identities=14% Similarity=0.137 Sum_probs=88.7
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCCc
Q 042752 99 NLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDICC 178 (415)
Q Consensus 99 nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~c 178 (415)
+++++||.|+||.. |+ . .++..-.-..|.+.|.+.+..|.+.......||++.... .....+ +.|.-
T Consensus 2 ~l~lavDlSgSM~~-----~~----~-~dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG~~g~~~~-~~~lt~--d~p~t 68 (191)
T cd01455 2 RLKLVVDVSGSMYR-----FN----G-YDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIGHSGDGPC-VPFVKT--NHPPK 68 (191)
T ss_pred ceEEEEECcHhHHH-----Hh----c-cCCccccHHHHHHHHHHHHHHHHHhCccceeeecCcccc-cCcccc--ccCcc
Confidence 68999999999952 21 0 222233344556666666666667777888888765422 111112 33333
Q ss_pred CCHH--HHHHHHHhhCCceeecCCCChHHHHHHHHHHHH-hcCCceEEEEEEeCCccccccccccCCCchhHHHHHH-HH
Q 042752 179 NGFE--EVLTQYREIVPSLRLAGPTSFAPIIEMATTIVE-KSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTID-AI 254 (415)
Q Consensus 179 ~G~e--gVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~-~s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTid-aI 254 (415)
...+ +++...-.- -++-+.|+.-- .-|..+++..+ ++..+=.|++.||||.-+. +.++| ++ |-
T Consensus 69 ~d~~~~~~l~~~l~~-~q~g~ag~~Ta-dAi~~av~rl~~~~~a~~kvvILLTDG~n~~------~~i~P-----~~aAa 135 (191)
T cd01455 69 NNKERLETLKMMHAH-SQFCWSGDHTV-EATEFAIKELAAKEDFDEAIVIVLSDANLER------YGIQP-----KKLAD 135 (191)
T ss_pred cchhHHHHHHHHHHh-cccCccCccHH-HHHHHHHHHHHhcCcCCCcEEEEEeCCCcCC------CCCCh-----HHHHH
Confidence 3332 333332221 23456776443 88888888876 6655557889999998664 33444 22 22
Q ss_pred HHhccCCeEEEEEecccCCCccccc
Q 042752 255 VQASEFPLSIILVGVGDGPWDMMKE 279 (415)
Q Consensus 255 V~AS~lPLSIIiVGVGd~~F~~Me~ 279 (415)
.-|.+.-+=|-.||||..+.+.++.
T Consensus 136 ~lA~~~gV~iytIgiG~~d~~~l~~ 160 (191)
T cd01455 136 ALAREPNVNAFVIFIGSLSDEADQL 160 (191)
T ss_pred HHHHhCCCEEEEEEecCCCHHHHHH
Confidence 3345667777788888754444443
No 41
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=97.06 E-value=0.019 Score=53.86 Aligned_cols=155 Identities=14% Similarity=0.251 Sum_probs=97.3
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc---cCCCCccceEeeCCCCCCC----CCcccc
Q 042752 99 NLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSA---FDEDNLIPCFGFGDASTHD----QDVFSF 171 (415)
Q Consensus 99 nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~---YD~Dk~iP~fGFGa~~t~d----~~vFsf 171 (415)
.++++||.|.||... . -+..++..+.|++.+..+++. ......+-++.||...+.. .+|+.+
T Consensus 3 ~ivf~iDvS~SM~~~-------~----~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~ 71 (218)
T cd01458 3 SVVFLVDVSPSMFES-------K----DGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVL 71 (218)
T ss_pred EEEEEEeCCHHHcCC-------C----CCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEe
Confidence 579999999999621 0 011368899999999999997 6666799999999875432 344444
Q ss_pred CCCCCCcCCHHHHHHHHHhhC-Ccee-------ecCCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCccccccccccC
Q 042752 172 YPDDICCNGFEEVLTQYREIV-PSLR-------LAGPTSFAPIIEMATTIVEKSG--GQYHVLLIIADGQVTRSVDTQHG 241 (415)
Q Consensus 172 ~~~~p~c~G~egVL~aYr~~l-~~v~-------LsGPT~FAPVI~~ai~iv~~s~--~~Y~VLLIITDG~ItD~~d~~~~ 241 (415)
.|-+ .... +.++...+.+ +.+. -++.|.+...|..|.++..+.. ..=-.+++||||.=. ++
T Consensus 72 ~~l~--~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p------~~ 142 (218)
T cd01458 72 LDLD--TPGA-ERVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDP------HG 142 (218)
T ss_pred ecCC--CCCH-HHHHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCC------CC
Confidence 3211 1122 2333444433 2221 2457899999999998876521 112467999999632 11
Q ss_pred CCchhHHHHHHHHHHhccCCeEEEEEecccCC
Q 042752 242 QLSSQEQKTIDAIVQASEFPLSIILVGVGDGP 273 (415)
Q Consensus 242 ~~~~d~~eTidaIV~AS~lPLSIIiVGVGd~~ 273 (415)
.=....++..+.+.+..+.-+.|.+||||..+
T Consensus 143 ~~~~~~~~~~~~a~~l~~~gI~i~~i~i~~~~ 174 (218)
T cd01458 143 GDSIKDSQAAVKAEDLKDKGIELELFPLSSPG 174 (218)
T ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCCC
Confidence 00011344455666667778999999998654
No 42
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.06 E-value=0.0075 Score=65.70 Aligned_cols=156 Identities=13% Similarity=0.217 Sum_probs=99.7
Q ss_pred eeceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcc-cccCCCCccceEeeCCCCCCCCCccccCCCC
Q 042752 97 SSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTL-SAFDEDNLIPCFGFGDASTHDQDVFSFYPDD 175 (415)
Q Consensus 97 s~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL-~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~ 175 (415)
...++++||.|+||. .+....|-.++..+| ..|-..-.+-++.|+..... .+...
T Consensus 401 ~~~vvfvvD~SGSM~------------------~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~--~~lpp---- 456 (584)
T PRK13406 401 ETTTIFVVDASGSAA------------------LHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAE--LLLPP---- 456 (584)
T ss_pred CccEEEEEECCCCCc------------------HhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCcee--EEcCC----
Confidence 368999999999983 134455555555655 34666668999999654211 11111
Q ss_pred CCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc--CCceEEEEEEeCCccccccccccCCCchhHHHHHHH
Q 042752 176 ICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKS--GGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDA 253 (415)
Q Consensus 176 p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s--~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTida 253 (415)
...++.+ ++.+..+.-+|-|.++.-|..|.+.+++. .+.-.++|+||||.-+...+...|. ....++..++
T Consensus 457 --T~~~~~~----~~~L~~l~~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~-~~~~~~~~~~ 529 (584)
T PRK13406 457 --TRSLVRA----KRSLAGLPGGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGR-AQAEEDALAA 529 (584)
T ss_pred --CcCHHHH----HHHHhcCCCCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccc-cchhhHHHHH
Confidence 1234443 34455677789999999999999887654 2335788999999866322111111 1123445666
Q ss_pred HHHhccCCeEEEEEecccCCCccccccCCC
Q 042752 254 IVQASEFPLSIILVGVGDGPWDMMKEFDDN 283 (415)
Q Consensus 254 IV~AS~lPLSIIiVGVGd~~F~~Me~LDd~ 283 (415)
...+...-+.+++|++|....+.|++|=+.
T Consensus 530 a~~~~~~gi~~~vId~g~~~~~~~~~LA~~ 559 (584)
T PRK13406 530 ARALRAAGLPALVIDTSPRPQPQARALAEA 559 (584)
T ss_pred HHHHHhcCCeEEEEecCCCCcHHHHHHHHh
Confidence 666666778899999998877677766543
No 43
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.95 E-value=0.013 Score=63.80 Aligned_cols=154 Identities=13% Similarity=0.176 Sum_probs=91.5
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc-cCCCCccceEeeCCCCCCCCCccccCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSA-FDEDNLIPCFGFGDASTHDQDVFSFYPDDI 176 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~-YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p 176 (415)
..+++.||.|+|+.. +..+.|-..+..++.. |-....+-++.|+..... .++.+
T Consensus 408 ~~v~fvvD~SGSM~~------------------~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~--~~lp~----- 462 (589)
T TIGR02031 408 RLLIFVVDASGSAAV------------------ARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAE--VLLPP----- 462 (589)
T ss_pred ceEEEEEECCCCCCh------------------HHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCce--EECCC-----
Confidence 458899999999941 3456666666666653 433347999999754310 12222
Q ss_pred CcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCccccccccccCCCch---hH-HHH
Q 042752 177 CCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSG--GQYHVLLIIADGQVTRSVDTQHGQLSS---QE-QKT 250 (415)
Q Consensus 177 ~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~--~~Y~VLLIITDG~ItD~~d~~~~~~~~---d~-~eT 250 (415)
-.+.+.+ ++.+..+..+|.|.++.-|..+.+.+++.. +.-.++|+||||.-+-..+..+....+ +. ++.
T Consensus 463 -t~~~~~~----~~~L~~l~~gGgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~ 537 (589)
T TIGR02031 463 -SRSVEQA----KRRLDVLPGGGGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEA 537 (589)
T ss_pred -CCCHHHH----HHHHhcCCCCCCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHH
Confidence 2244443 345667888999999999999999876532 223678999999754211100000010 01 122
Q ss_pred HHHHHHhccCCeEEEEEecccCCCc--cccccC
Q 042752 251 IDAIVQASEFPLSIILVGVGDGPWD--MMKEFD 281 (415)
Q Consensus 251 idaIV~AS~lPLSIIiVGVGd~~F~--~Me~LD 281 (415)
..+.....+..+.+++||+|.+..+ .|++|=
T Consensus 538 ~~~a~~~~~~gi~~~vid~~~~~~~~~~~~~lA 570 (589)
T TIGR02031 538 LALARKIREAGMPALVIDTAMRFVSTGFAQKLA 570 (589)
T ss_pred HHHHHHHHhcCCeEEEEeCCCCCccchHHHHHH
Confidence 2223333456789999999976443 365553
No 44
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=96.85 E-value=0.013 Score=57.10 Aligned_cols=134 Identities=19% Similarity=0.237 Sum_probs=78.0
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc-cCCCCccceEeeCCCCCCCCCccccCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSA-FDEDNLIPCFGFGDASTHDQDVFSFYPDDI 176 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~-YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p 176 (415)
+++++.||.|+|+. +..+.|...+...+.. +..+..+-++.|+..... ++.|.
T Consensus 54 ~~vvlvlD~SgSM~-------------------~~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~---~~~~t---- 107 (296)
T TIGR03436 54 LTVGLVIDTSGSMR-------------------NDLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRL---LQDFT---- 107 (296)
T ss_pred ceEEEEEECCCCch-------------------HHHHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeE---eecCC----
Confidence 68999999999994 1235566666666655 566788999999976432 22332
Q ss_pred CcCCHHHHHHHHHhhCC-----------ceeecCCCChHHHHHHHH-HHHHhcC----CceEEEEEEeCCcccccccccc
Q 042752 177 CCNGFEEVLTQYREIVP-----------SLRLAGPTSFAPIIEMAT-TIVEKSG----GQYHVLLIIADGQVTRSVDTQH 240 (415)
Q Consensus 177 ~c~G~egVL~aYr~~l~-----------~v~LsGPT~FAPVI~~ai-~iv~~s~----~~Y~VLLIITDG~ItD~~d~~~ 240 (415)
...+.+.++-.+..+ .+...|.|.+..-|..++ +...+.. +. -++|+||||.-+.+
T Consensus 108 --~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~r-k~iIllTDG~~~~~----- 179 (296)
T TIGR03436 108 --SDPRLLEAALNRLKPPLRTDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGR-KALIVISDGGDNRS----- 179 (296)
T ss_pred --CCHHHHHHHHHhccCCCccccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCC-eEEEEEecCCCcch-----
Confidence 123444444333222 123367788777665554 3332221 22 57899999964321
Q ss_pred CCCchhHHHHHHHHHHhccCCeEEEEEeccc
Q 042752 241 GQLSSQEQKTIDAIVQASEFPLSIILVGVGD 271 (415)
Q Consensus 241 ~~~~~d~~eTidaIV~AS~lPLSIIiVGVGd 271 (415)
..+.+++++. +...-+.|..||+|+
T Consensus 180 ---~~~~~~~~~~---~~~~~v~vy~I~~~~ 204 (296)
T TIGR03436 180 ---RDTLERAIDA---AQRADVAIYSIDARG 204 (296)
T ss_pred ---HHHHHHHHHH---HHHcCCEEEEeccCc
Confidence 0123334433 344567777888875
No 45
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=96.74 E-value=0.016 Score=54.73 Aligned_cols=161 Identities=11% Similarity=0.159 Sum_probs=98.9
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceEeeCCCCCCCCCccccCCCC
Q 042752 99 NLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDE---DNLIPCFGFGDASTHDQDVFSFYPDD 175 (415)
Q Consensus 99 nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~---Dk~iP~fGFGa~~t~d~~vFsf~~~~ 175 (415)
-.+|+||.|.|+... +-.+|.++.+...+..++..|-+ ...+-+..|++..... +.++..
T Consensus 5 a~vi~lD~S~sM~a~-------------D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v--~~plT~-- 67 (187)
T cd01452 5 ATMICIDNSEYMRNG-------------DYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEV--LVTLTN-- 67 (187)
T ss_pred EEEEEEECCHHHHcC-------------CCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEE--EECCCC--
Confidence 478999999998531 11479999999999888744443 3467777787743221 112221
Q ss_pred CCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC---CceEEEEEEeCCccccccccccCCCchhHHHHHH
Q 042752 176 ICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSG---GQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTID 252 (415)
Q Consensus 176 p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~---~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTid 252 (415)
..+.++.. +..+.+.|.+++..-|+.|....+... ..=-|++|++++.-.| +....+
T Consensus 68 ----D~~~~~~~----L~~i~~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d------------~~~i~~ 127 (187)
T cd01452 68 ----DQGKILSK----LHDVQPKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEED------------EKDLVK 127 (187)
T ss_pred ----CHHHHHHH----HHhCCCCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCC------------HHHHHH
Confidence 23333333 334567799999999999987765332 2225566666663333 455667
Q ss_pred HHHHhccCCeEEEEEecccC--CCccccccCCCCCCCcccceecccch
Q 042752 253 AIVQASEFPLSIILVGVGDG--PWDMMKEFDDNIPARAFDNFQFVNFT 298 (415)
Q Consensus 253 aIV~AS~lPLSIIiVGVGd~--~F~~Me~LDd~~~~R~rDNvQFV~f~ 298 (415)
++.++.+.-+.|-+||+|+. +=+.++.|-+... .-||-+||...
T Consensus 128 ~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~--~~~~s~~~~~~ 173 (187)
T cd01452 128 LAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVN--GKDGSHLVSVP 173 (187)
T ss_pred HHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhc--CCCCceEEEeC
Confidence 77777778888888999875 2333343433221 13566776543
No 46
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.35 E-value=0.063 Score=58.86 Aligned_cols=141 Identities=14% Similarity=0.206 Sum_probs=86.4
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc-ccCCCCccceEeeCCCCCCCCCccccCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLS-AFDEDNLIPCFGFGDASTHDQDVFSFYPDDI 176 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~-~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p 176 (415)
..++++||.|+||.. .+..+.|...+..++. .|-....+-+++|++... ..++.+
T Consensus 466 ~~vv~vvD~SgSM~~-----------------~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a--~~~~p~----- 521 (633)
T TIGR02442 466 NLVIFVVDASGSMAA-----------------RGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEA--EVLLPP----- 521 (633)
T ss_pred ceEEEEEECCccCCC-----------------ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCc--eEEcCC-----
Confidence 578999999999951 1355666666666653 466667899999975311 112221
Q ss_pred CcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHh----cCCceEEEEEEeCCccccccccccCCCchhHHHHHH
Q 042752 177 CCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEK----SGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTID 252 (415)
Q Consensus 177 ~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~----s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTid 252 (415)
-.+.+.+. +.+..+...|-|.++.-|..+.+.+.. ....=.++|+||||.-+.+ +. + ..-.++..+
T Consensus 522 -t~~~~~~~----~~L~~l~~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~-~~--~--~~~~~~~~~ 591 (633)
T TIGR02442 522 -TSSVELAA----RRLEELPTGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVA-DG--G--EPPTDDART 591 (633)
T ss_pred -CCCHHHHH----HHHHhCCCCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCC-CC--C--CChHHHHHH
Confidence 12333332 244556678999999999999988773 2233467799999986532 10 1 011233333
Q ss_pred HHHHhccCCeEEEEEecccC
Q 042752 253 AIVQASEFPLSIILVGVGDG 272 (415)
Q Consensus 253 aIV~AS~lPLSIIiVGVGd~ 272 (415)
+-....+.-+-+++|+.+.+
T Consensus 592 ~a~~l~~~~i~~~vIdt~~~ 611 (633)
T TIGR02442 592 IAAKLAARGILFVVIDTESG 611 (633)
T ss_pred HHHHHHhcCCeEEEEeCCCC
Confidence 33333445677888887664
No 47
>PRK10997 yieM hypothetical protein; Provisional
Probab=95.68 E-value=0.19 Score=54.01 Aligned_cols=145 Identities=15% Similarity=0.180 Sum_probs=84.3
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHH-HHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAI-SIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDI 176 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI-~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p 176 (415)
-.++|.||.|+|+. |. .-.|.+|+ -+++.++.. ....+-++.|++..... .+.
T Consensus 324 GpiII~VDtSGSM~--G~--------------ke~~AkalAaAL~~iAl~--q~dr~~li~Fs~~i~~~----~l~---- 377 (487)
T PRK10997 324 GPFIVCVDTSGSMG--GF--------------NEQCAKAFCLALMRIALA--ENRRCYIMLFSTEVVTY----ELT---- 377 (487)
T ss_pred CcEEEEEECCCCCC--CC--------------HHHHHHHHHHHHHHHHHh--cCCCEEEEEecCCceee----ccC----
Confidence 47999999999994 21 12455553 333333322 23345688898754321 121
Q ss_pred CcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccccccccCCCchhHHHHHHHHHH
Q 042752 177 CCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQ 256 (415)
Q Consensus 177 ~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~ 256 (415)
.-.|+..+++.-.. .++|.|++++.++.+++.+++..-.=-++|||+|+..... +.++.+.++.+.+
T Consensus 378 ~~~gl~~ll~fL~~-----~f~GGTDl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~--------~eel~~~L~~Lk~ 444 (487)
T PRK10997 378 GPDGLEQAIRFLSQ-----SFRGGTDLAPCLRAIIEKMQGREWFDADAVVISDFIAQRL--------PDELVAKVKELQR 444 (487)
T ss_pred CccCHHHHHHHHHH-----hcCCCCcHHHHHHHHHHHHcccccCCceEEEECCCCCCCC--------hHHHHHHHHHHHH
Confidence 23578777765533 2589999999999999888654222256899999964321 1223444555555
Q ss_pred hccCCeEEEEEecccCCCccccccCC
Q 042752 257 ASEFPLSIILVGVGDGPWDMMKEFDD 282 (415)
Q Consensus 257 AS~lPLSIIiVGVGd~~F~~Me~LDd 282 (415)
....=+--+.||- .+.=+.|+.||.
T Consensus 445 ~~~~rf~~l~i~~-~~~p~l~~ifD~ 469 (487)
T PRK10997 445 QHQHRFHAVAMSA-HGKPGIMRIFDH 469 (487)
T ss_pred hcCcEEEEEEeCC-CCCchHHHhcCe
Confidence 4455444444442 133244676764
No 48
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=95.46 E-value=0.15 Score=48.56 Aligned_cols=122 Identities=17% Similarity=0.161 Sum_probs=72.4
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDIC 177 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~ 177 (415)
..++|.||.|+|+.. |. +-++..+-.+...+. .+-+|-|+.....-... +.
T Consensus 58 ~~lvvl~DvSGSM~~------------~s-------~~~l~~~~~l~~~~~---~~~~f~F~~~l~~vT~~--l~----- 108 (222)
T PF05762_consen 58 RRLVVLCDVSGSMAG------------YS-------EFMLAFLYALQRQFR---RVRVFVFSTRLTEVTPL--LR----- 108 (222)
T ss_pred ccEEEEEeCCCChHH------------HH-------HHHHHHHHHHHHhCC---CEEEEEEeeehhhhhhh--hc-----
Confidence 479999999999952 11 122222222333333 78899998764321111 11
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccccccccCCCchhHHHHHHHHHHh
Q 042752 178 CNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQA 257 (415)
Q Consensus 178 c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~A 257 (415)
..+..+.+..-...... ++|-|++...++++.+......-.-.++|||+||.=++ ..+...+.++.|.+.
T Consensus 109 ~~~~~~~l~~~~~~~~~--~~GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~~~~--------~~~~~~~~l~~l~~r 178 (222)
T PF05762_consen 109 RRDPEEALARLSALVQS--FGGGTDIGQALREFLRQYARPDLRRTTVVIISDGWDTN--------DPEPLAEELRRLRRR 178 (222)
T ss_pred cCCHHHHHHHHHhhccC--CCCccHHHHHHHHHHHHhhcccccCcEEEEEecccccC--------ChHHHHHHHHHHHHh
Confidence 12444555544333333 89999999999999988764322457889999994332 123455666666654
Q ss_pred c
Q 042752 258 S 258 (415)
Q Consensus 258 S 258 (415)
.
T Consensus 179 ~ 179 (222)
T PF05762_consen 179 G 179 (222)
T ss_pred C
Confidence 4
No 49
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=95.42 E-value=0.11 Score=59.07 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=82.8
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHH-hhcccccCCCCccceEeeCCCCCCCCCccccCCCCCC
Q 042752 99 NLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISII-GKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDIC 177 (415)
Q Consensus 99 nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~I-g~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~ 177 (415)
.++++||.|+||... + ..+.-++|++.. ..+ +..+-.+-++.|+....- +..|.+-.
T Consensus 306 ~VVLVLDvSGSM~g~-------d-------RL~~lkqAA~~fL~~~---l~~~DrVGLVtFsssA~v---l~pLt~It-- 363 (863)
T TIGR00868 306 IVCLVLDKSGSMTVE-------D-------RLKRMNQAAKLFLLQT---VEKGSWVGMVTFDSAAYI---KNELIQIT-- 363 (863)
T ss_pred eEEEEEECCcccccc-------C-------HHHHHHHHHHHHHHHh---CCCCCEEEEEEECCceeE---eeccccCC--
Confidence 488999999999521 1 123345555543 233 345668999999886432 11222111
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCC--ceEEEEEEeCCccccccccccCCCchhHHHHHHHHH
Q 042752 178 CNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGG--QYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIV 255 (415)
Q Consensus 178 c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~~--~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV 255 (415)
. ....++-...++ ....|-|++..-|+.|.+..++... .=-++++||||+-.+ ..+. +.
T Consensus 364 --s-~~dr~aL~~~L~-~~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~------------~~~~---l~ 424 (863)
T TIGR00868 364 --S-SAERDALTANLP-TAASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNT------------ISSC---FE 424 (863)
T ss_pred --c-HHHHHHHHHhhc-cccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCC------------HHHH---HH
Confidence 1 112222223343 3467899999999999998876431 123568889998442 2233 33
Q ss_pred HhccCCeEEEEEecccCCCcccccc
Q 042752 256 QASEFPLSIILVGVGDGPWDMMKEF 280 (415)
Q Consensus 256 ~AS~lPLSIIiVGVGd~~F~~Me~L 280 (415)
++....+.|-.||+|...=..|+++
T Consensus 425 ~lk~~gVtI~TIg~G~dad~~L~~I 449 (863)
T TIGR00868 425 EVKQSGAIIHTIALGPSAAKELEEL 449 (863)
T ss_pred HHHHcCCEEEEEEeCCChHHHHHHH
Confidence 3444678888899997543444444
No 50
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=92.96 E-value=0.59 Score=45.02 Aligned_cols=141 Identities=19% Similarity=0.276 Sum_probs=77.4
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc--cC-CCCccceEeeCCCCC---CCCCcccc
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSA--FD-EDNLIPCFGFGDAST---HDQDVFSF 171 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~--YD-~Dk~iP~fGFGa~~t---~d~~vFsf 171 (415)
+-+++-+|.++|+- ++++|.. |.= |..+...|.+ |- +--.+-+.-||.... +.-++-+|
T Consensus 4 lP~~lllDtSgSM~--------Ge~Ieal----N~G---lq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~~~~nF 68 (207)
T COG4245 4 LPCYLLLDTSGSMI--------GEPIEAL----NAG---LQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFTDAANF 68 (207)
T ss_pred CCEEEEEecCcccc--------cccHHHH----HHH---HHHHHHHHHhChhhhheeEEEEEEecCcceEEechhhHhhc
Confidence 34788999999983 3577754 222 2222222221 10 123467778875321 11122344
Q ss_pred CCCCCCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc--------CCce-EEEEEEeCCccccccccccCC
Q 042752 172 YPDDICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKS--------GGQY-HVLLIIADGQVTRSVDTQHGQ 242 (415)
Q Consensus 172 ~~~~p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s--------~~~Y-~VLLIITDG~ItD~~d~~~~~ 242 (415)
++ |.+...|-|...--|+.+.+.+++. .+.| .+..+||||.-+|- .
T Consensus 69 ~~-------------------p~L~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD~--w---- 123 (207)
T COG4245 69 NP-------------------PILTAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTDD--W---- 123 (207)
T ss_pred CC-------------------CceecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcchH--H----
Confidence 33 4466678899999999999988653 2334 45578999999871 1
Q ss_pred CchhHHHHHHHHHHhccCCeEEEEEecccCCCccccccC
Q 042752 243 LSSQEQKTIDAIVQASEFPLSIILVGVGDGPWDMMKEFD 281 (415)
Q Consensus 243 ~~~d~~eTidaIV~AS~lPLSIIiVGVGd~~F~~Me~LD 281 (415)
++.+++-.--+++.--+-+..||+-.++-..++++-
T Consensus 124 ---~~~~~~~~~~~~~~k~v~a~~~G~~~ad~~~L~qit 159 (207)
T COG4245 124 ---QAGAALVFQGERRAKSVAAFSVGVQGADNKTLNQIT 159 (207)
T ss_pred ---HhHHHHhhhcccccceEEEEEecccccccHHHHHHH
Confidence 122333333334444444444444455655555554
No 51
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=84.91 E-value=6.4 Score=42.15 Aligned_cols=130 Identities=15% Similarity=0.162 Sum_probs=79.3
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHH-HHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCC
Q 042752 99 NLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAI-SIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDIC 177 (415)
Q Consensus 99 nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI-~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~ 177 (415)
-++|-||-|+||.- .+=+..+|+ -++.+++-. +++.+-++-|-. .++.. ...+.
T Consensus 274 pvilllD~SGSM~G----------------~~e~~AKAvalAl~~~ala--enR~~~~~lF~s------~~~~~-el~~k 328 (437)
T COG2425 274 PVILLLDKSGSMSG----------------FKEQWAKAVALALMRIALA--ENRDCYVILFDS------EVIEY-ELYEK 328 (437)
T ss_pred CEEEEEeCCCCcCC----------------cHHHHHHHHHHHHHHHHHH--hccceEEEEecc------cceee-eecCC
Confidence 79999999999952 111223322 122222222 345566777755 12222 12334
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC-CceEEEEEEeCCccccccccccCCCchhHHHHHHHHHH
Q 042752 178 CNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSG-GQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQ 256 (415)
Q Consensus 178 c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~-~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~ 256 (415)
..|++++++-- .. .+.|-|+|...|+.|++.+++.. .+ .=||+||||.-.. +.+....++.+.+
T Consensus 329 ~~~~~e~i~fL----~~-~f~GGTD~~~~l~~al~~~k~~~~~~-adiv~ITDg~~~~---------~~~~~~~v~e~~k 393 (437)
T COG2425 329 KIDIEELIEFL----SY-VFGGGTDITKALRSALEDLKSRELFK-ADIVVITDGEDER---------LDDFLRKVKELKK 393 (437)
T ss_pred ccCHHHHHHHH----hh-hcCCCCChHHHHHHHHHHhhcccccC-CCEEEEeccHhhh---------hhHHHHHHHHHHH
Confidence 56888887743 22 23444999999999999987543 23 4459999996332 2356778888888
Q ss_pred hccCCeEEEEEe
Q 042752 257 ASEFPLSIILVG 268 (415)
Q Consensus 257 AS~lPLSIIiVG 268 (415)
+++.=+--|+||
T Consensus 394 ~~~~rl~aV~I~ 405 (437)
T COG2425 394 RRNARLHAVLIG 405 (437)
T ss_pred HhhceEEEEEec
Confidence 888766555554
No 52
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=83.02 E-value=21 Score=33.28 Aligned_cols=150 Identities=13% Similarity=0.163 Sum_probs=77.2
Q ss_pred eEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc---cCCCCccceEeeCCCCCCC-------CCcc
Q 042752 100 LIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSA---FDEDNLIPCFGFGDASTHD-------QDVF 169 (415)
Q Consensus 100 liVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~---YD~Dk~iP~fGFGa~~t~d-------~~vF 169 (415)
+++.||.+.|+.... -+. ..+.+.|++.|-.+++. ....-.+-++.||...+.+ .+++
T Consensus 2 ~vflID~s~sM~~~~-----------~~~-~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~ 69 (224)
T PF03731_consen 2 TVFLIDVSPSMFEPS-----------SES-ESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIF 69 (224)
T ss_dssp EEEEEE-SCGGGS-B-----------TTC-S-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEE
T ss_pred EEEEEECCHHHCCCC-----------CCc-chhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceE
Confidence 689999999996321 011 11778888887776543 3333579999999876643 3455
Q ss_pred ccCCCCCCcCCHHHHHHHHHhhCC------ceeecCCCChHHHHHHHHHHHHh--cCCce--EEEEEEeCCccccccccc
Q 042752 170 SFYPDDICCNGFEEVLTQYREIVP------SLRLAGPTSFAPIIEMATTIVEK--SGGQY--HVLLIIADGQVTRSVDTQ 239 (415)
Q Consensus 170 sf~~~~p~c~G~egVL~aYr~~l~------~v~LsGPT~FAPVI~~ai~iv~~--s~~~Y--~VLLIITDG~ItD~~d~~ 239 (415)
.+.+-+. -+++.+.+.-....+ .-.-.....+..++-.++.+..+ ...++ --+++|||+.--.
T Consensus 70 ~l~~l~~--~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~----- 142 (224)
T PF03731_consen 70 VLQPLDP--PSAERLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPH----- 142 (224)
T ss_dssp EEEECC----BHHHHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTT-----
T ss_pred EeecCCc--cCHHHHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCC-----
Confidence 5543221 133333222111111 00012345677777777776654 22232 4457899874321
Q ss_pred cCCCchhHHHHHHH--HHHhccCCeEEEEEecc
Q 042752 240 HGQLSSQEQKTIDA--IVQASEFPLSIILVGVG 270 (415)
Q Consensus 240 ~~~~~~d~~eTida--IV~AS~lPLSIIiVGVG 270 (415)
. -..+.+.+++- +.+....=+.+.++.+.
T Consensus 143 -~-~~~~~~~~~~~l~~~Dl~~~~i~~~~~~l~ 173 (224)
T PF03731_consen 143 -E-DDDELERIIQKLKAKDLQDNGIEIELFFLP 173 (224)
T ss_dssp -T--CCCHHHHHHHHHHHHHHHHTEEEEEEECT
T ss_pred -C-CHHHHHHHHHhhccccchhcCcceeEeecC
Confidence 1 12245666666 66677788888888883
No 53
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=82.05 E-value=7.1 Score=39.22 Aligned_cols=145 Identities=14% Similarity=0.239 Sum_probs=92.1
Q ss_pred CCceeceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhh-cccccCCCCccceEeeCCCCCCCCCccccC
Q 042752 94 GLESSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGK-TLSAFDEDNLIPCFGFGDASTHDQDVFSFY 172 (415)
Q Consensus 94 Gles~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~-iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~ 172 (415)
|=...=++++||-|+||.-- + --+.|=-.+.. +-..|-.-.++-+.+|=... .++ -+.
T Consensus 75 ~r~g~lvvfvVDASgSM~~~----------~-------Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~---A~l-ll~ 133 (261)
T COG1240 75 GRAGNLIVFVVDASGSMAAR----------R-------RMAAAKGAALSLLRDAYQRRDKVAVIAFRGEK---AEL-LLP 133 (261)
T ss_pred cCcCCcEEEEEeCcccchhH----------H-------HHHHHHHHHHHHHHHHHHccceEEEEEecCCc---ceE-EeC
Confidence 44445678999999999520 0 11222222222 22456666788888885321 112 111
Q ss_pred CCCCCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC----CceEEEEEEeCCccccccccccCCCchhHH
Q 042752 173 PDDICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSG----GQYHVLLIIADGQVTRSVDTQHGQLSSQEQ 248 (415)
Q Consensus 173 ~~~p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~----~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~ 248 (415)
| -..++.+ .+.+..+.-+|-|-.++-|.++.++..+.. ..-.|+|+||||..++.. .+++ +.
T Consensus 134 p----T~sv~~~----~~~L~~l~~GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~-----~~~~-~~ 199 (261)
T COG1240 134 P----TSSVELA----ERALERLPTGGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPI-----PLGP-KA 199 (261)
T ss_pred C----cccHHHH----HHHHHhCCCCCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCC-----CCch-HH
Confidence 1 1233333 334556777899999999999999875543 345788999999976521 1222 67
Q ss_pred HHHHHHHHhccCCeEEEEEecccCC
Q 042752 249 KTIDAIVQASEFPLSIILVGVGDGP 273 (415)
Q Consensus 249 eTidaIV~AS~lPLSIIiVGVGd~~ 273 (415)
+|.++-......++-+++|......
T Consensus 200 e~~~~a~~~~~~g~~~lvid~e~~~ 224 (261)
T COG1240 200 ETLEAASKLRLRGIQLLVIDTEGSE 224 (261)
T ss_pred HHHHHHHHHhhcCCcEEEEecCCcc
Confidence 8888888888888888888887765
No 54
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=66.32 E-value=19 Score=35.42 Aligned_cols=52 Identities=21% Similarity=0.397 Sum_probs=32.0
Q ss_pred CCceEEEEEEeCCccccccc---cccCCCchhHHHHHHHHHHhccCCeEEEEEeccc
Q 042752 218 GGQYHVLLIIADGQVTRSVD---TQHGQLSSQEQKTIDAIVQASEFPLSIILVGVGD 271 (415)
Q Consensus 218 ~~~Y~VLLIITDG~ItD~~d---~~~~~~~~d~~eTidaIV~AS~lPLSIIiVGVGd 271 (415)
..+=-||++|+||.-.|..- ....-|..+++++++.|-. .-++-++-||||.
T Consensus 133 ~e~rkiLiViSDG~P~d~st~~~n~~~~L~~HLr~vi~~ie~--~~~Vel~aiGIg~ 187 (219)
T PF11775_consen 133 PEQRKILIVISDGAPADDSTLSANDGDYLDAHLRQVIAEIET--RSDVELIAIGIGH 187 (219)
T ss_pred CccceEEEEEeCCCcCcccccccCChHHHHHHHHHHHHHHhc--cCCcEEEEEEcCC
Confidence 33457999999998876210 0111244555666655554 3477788888885
No 55
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=58.86 E-value=96 Score=37.17 Aligned_cols=147 Identities=13% Similarity=0.252 Sum_probs=91.4
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDIC 177 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~ 177 (415)
-.+.|-+|-++|+. | ..+| -|-..+-.+|.-+-+|-.+-..-|+-.......|| .++.
T Consensus 226 KdiviLlD~SgSm~--g------~~~~----------lak~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~----~~~l 283 (1104)
T KOG2353|consen 226 KDIVILLDVSGSMS--G------LRLD----------LAKQTVNEILDTLSDNDFVNILTFNSEVNPVSPCF----NGTL 283 (1104)
T ss_pred cceEEEEecccccc--c------hhhH----------HHHHHHHHHHHhcccCCeEEEEeeccccCcccccc----cCce
Confidence 57888999999984 1 2333 33344555666666666777778876543333332 2233
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc---------CCceEEEEEEeCCccccccccccCCCchhHH
Q 042752 178 CNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKS---------GGQYHVLLIIADGQVTRSVDTQHGQLSSQEQ 248 (415)
Q Consensus 178 c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s---------~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~ 248 (415)
+++--...+..++.+..+...|-++|.-..+.|-...... +..+.+.++||||...+ -+
T Consensus 284 vqAt~~nk~~~~~~i~~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~------------~~ 351 (1104)
T KOG2353|consen 284 VQATMRNKKVFKEAIETLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDEN------------AK 351 (1104)
T ss_pred eecchHHHHHHHHHHhhhccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCccc------------HH
Confidence 4444455566677777788889999999999998876432 12578889999998654 23
Q ss_pred HHHHHHHHh-ccCCeEEEEEecccCCCcccc
Q 042752 249 KTIDAIVQA-SEFPLSIILVGVGDGPWDMMK 278 (415)
Q Consensus 249 eTidaIV~A-S~lPLSIIiVGVGd~~F~~Me 278 (415)
+..+.-..- -..-++=.+||-+..+|+.++
T Consensus 352 ~If~~yn~~~~~Vrvftflig~~~~~~~~~~ 382 (1104)
T KOG2353|consen 352 EIFEKYNWPDKKVRVFTFLIGDEVYDLDEIQ 382 (1104)
T ss_pred HHHHhhccCCCceEEEEEEecccccccccch
Confidence 333333221 123355566777777766654
No 56
>KOG4465 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.91 E-value=1e+02 Score=33.03 Aligned_cols=142 Identities=19% Similarity=0.307 Sum_probs=86.3
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDIC 177 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~ 177 (415)
-++++|+|.++|+.. +-|-.+ .|--+.|- .+ .|-..-.....-|..|-+..+. | +|.-|.
T Consensus 428 kr~~laldvs~sm~~--------rv~~s~---ln~reaaa-~m--~linlhnead~~~vaf~d~lte---~-pftkd~-- 487 (598)
T KOG4465|consen 428 KRFCLALDVSASMNQ--------RVLGSI---LNAREAAA-AM--CLINLHNEADSRCVAFCDELTE---C-PFTKDM-- 487 (598)
T ss_pred ceEEEEEecchhhhh--------hhhccc---cchHHHHh-hh--heeeeccccceeEEEecccccc---C-CCcccc--
Confidence 489999999999842 222211 34333332 22 2223333455667888777543 1 222221
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccccccccCCCchhHHHHHHHHHHh
Q 042752 178 CNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQA 257 (415)
Q Consensus 178 c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~A 257 (415)
-+..|+++- .++..+|..+=-|+| .+++++.+.-|.+|+||.+. --|..-| .+.++.-++|
T Consensus 488 --kigqv~~~~----nni~~g~tdcglpm~-----wa~ennlk~dvfii~tdndt------~ageihp--~~aik~yrea 548 (598)
T KOG4465|consen 488 --KIGQVLDAM----NNIDAGGTDCGLPMI-----WAQENNLKADVFIIFTDNDT------FAGEIHP--AEAIKEYREA 548 (598)
T ss_pred --cHHHHHHHH----hcCCCCCCccCCcee-----ehhhcCCCccEEEEEecCcc------cccccCH--HHHHHHHHHh
Confidence 356666643 345556655555654 36677788999999999532 2233333 6788889999
Q ss_pred ccCC-eEEEEEecccCCCcccc
Q 042752 258 SEFP-LSIILVGVGDGPWDMMK 278 (415)
Q Consensus 258 S~lP-LSIIiVGVGd~~F~~Me 278 (415)
+..| --+|+.|+-..+|..-.
T Consensus 549 ~~i~dakliv~amqa~d~siad 570 (598)
T KOG4465|consen 549 MDIHDAKLIVCAMQANDFSIAD 570 (598)
T ss_pred cCCCcceEEEEEeecCCceecC
Confidence 9999 66777788877776543
No 57
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=45.61 E-value=1.4e+02 Score=31.39 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=42.1
Q ss_pred ccccHHHHHHHHHhcCCce-eceEEEEeccCCCCCCCCCCCCCCCcccc--CCCCCHHHHHHHHHhhcccccC
Q 042752 79 NYKSLDQVTGALAHAGLES-SNLIVGIDFTKSNEWTGSRSFNRRSLHHI--GHGQNPYEQAISIIGKTLSAFD 148 (415)
Q Consensus 79 ~yssld~V~~aL~~~Gles-~nliVaIDFT~SN~~tg~~s~~~~SLHyi--~~~~N~YqqAI~~Ig~iL~~YD 148 (415)
+-.-|+.|.+|++++|++- -++.++||+-+|--|.. ..-+|- .+..-.-++||+.+.++++.|+
T Consensus 212 d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~------~~y~~~~~~~~~~t~~eai~~~~~l~e~~~ 278 (408)
T cd03313 212 NEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDE------GKYVYDSDEGKKLTSEELIDYYKELVKKYP 278 (408)
T ss_pred hHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhccc------CcceeccCCCcccCHHHHHHHHHHHHHhCC
Confidence 3445777999999999972 37999999988753311 112221 1122234889988888888776
No 58
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=45.58 E-value=4.1e+02 Score=29.45 Aligned_cols=152 Identities=12% Similarity=0.225 Sum_probs=86.8
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc---cCCCCccceEeeCCCCCCC----CCcccc
Q 042752 99 NLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSA---FDEDNLIPCFGFGDASTHD----QDVFSF 171 (415)
Q Consensus 99 nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~---YD~Dk~iP~fGFGa~~t~d----~~vFsf 171 (415)
-+++.||.+.||-.. . ..+ +...+.+.|++.|-.+++. ..+.-+|-++-||...+.+ .+|+-+
T Consensus 12 ailflIDvs~sM~~~---~---~~~----~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~ 81 (584)
T TIGR00578 12 SLIFLVDASKAMFEE---S---QGE----DELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVL 81 (584)
T ss_pred EEEEEEECCHHHcCC---C---cCc----CcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEE
Confidence 689999999998531 0 011 1356778888877765543 4566789999999876542 345444
Q ss_pred CC-CCCCcCCHHHHHHHHHhhCCc---------eeecCCCChHHHHHHHHHHHHhcCCce--EEEEEEeCCccccccccc
Q 042752 172 YP-DDICCNGFEEVLTQYREIVPS---------LRLAGPTSFAPIIEMATTIVEKSGGQY--HVLLIIADGQVTRSVDTQ 239 (415)
Q Consensus 172 ~~-~~p~c~G~egVL~aYr~~l~~---------v~LsGPT~FAPVI~~ai~iv~~s~~~Y--~VLLIITDG~ItD~~d~~ 239 (415)
++ +.| +++.|.+. +...+. .-.+...+++-++-.++++....+.+| -=+++|||-. .+
T Consensus 82 ~~L~~p---~a~~i~~L-~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D------~P 151 (584)
T TIGR00578 82 QELDNP---GAKRILEL-DQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNED------NP 151 (584)
T ss_pred eeCCCC---CHHHHHHH-HHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCC------CC
Confidence 33 223 33333221 111111 011223478999998888876432233 2357888753 33
Q ss_pred cCCCchhHHHHHHHHHHhccCCeEEEEEecc
Q 042752 240 HGQLSSQEQKTIDAIVQASEFPLSIILVGVG 270 (415)
Q Consensus 240 ~~~~~~d~~eTidaIV~AS~lPLSIIiVGVG 270 (415)
|+.=+.....+..-+.+..++-+.|.++-+.
T Consensus 152 ~~~~~~~~~~a~~~a~dl~~~gi~ielf~l~ 182 (584)
T TIGR00578 152 HGNDSAKASRARTKAGDLRDTGIFLDLMHLK 182 (584)
T ss_pred CCCchhHHHHHHHHHHHHHhcCeEEEEEecC
Confidence 4332222333344566677889999888775
No 59
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=45.22 E-value=57 Score=36.29 Aligned_cols=83 Identities=16% Similarity=0.236 Sum_probs=59.6
Q ss_pred eeecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccccccccCCCchhHHHHHHHHHHhccCCeEEEEEecccCCC
Q 042752 195 LRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQASEFPLSIILVGVGDGPW 274 (415)
Q Consensus 195 v~LsGPT~FAPVI~~ai~iv~~s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~AS~lPLSIIiVGVGd~~F 274 (415)
++..--|--...|++|.+..-...+.=-.||++|||.-.| +|--.|+. -.+.|.+|+.+|-+.-|+++-|=|-...-
T Consensus 527 LePg~ytR~G~AIR~As~kL~~rpq~qklLivlSDGkPnd-~d~YEgr~--gIeDTr~AV~eaRk~Gi~VF~Vtld~ea~ 603 (637)
T COG4548 527 LEPGYYTRDGAAIRHASAKLMERPQRQKLLIVLSDGKPND-FDHYEGRF--GIEDTREAVIEARKSGIEVFNVTLDREAI 603 (637)
T ss_pred cCccccccccHHHHHHHHHHhcCcccceEEEEecCCCccc-cccccccc--chhhHHHHHHHHHhcCceEEEEEecchhh
Confidence 3444457777889988776544444557889999999887 55333443 35899999999999999999998877654
Q ss_pred cccccc
Q 042752 275 DMMKEF 280 (415)
Q Consensus 275 ~~Me~L 280 (415)
+.+..+
T Consensus 604 ~y~p~~ 609 (637)
T COG4548 604 SYLPAL 609 (637)
T ss_pred hhhHHH
Confidence 444333
No 60
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=43.36 E-value=49 Score=33.67 Aligned_cols=154 Identities=18% Similarity=0.278 Sum_probs=74.1
Q ss_pred cccccccHHHHHHHHHhcCCceeceEEEEeccCCCCC---CCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCc
Q 042752 76 IDDNYKSLDQVTGALAHAGLESSNLIVGIDFTKSNEW---TGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNL 152 (415)
Q Consensus 76 I~~~yssld~V~~aL~~~Gles~nliVaIDFT~SN~~---tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~ 152 (415)
+.++..-||.|..|++++|++- ++.+|||+.+|--+ .|+--+..++...-....=.=++-|.-..+++..|
T Consensus 76 ~~~~eeaL~ll~~Ai~~aGy~~-~v~ialD~AAsefyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li~~Y----- 149 (295)
T PF00113_consen 76 IDDNEEALDLLMEAIKEAGYEP-DVAIALDVAASEFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLIKKY----- 149 (295)
T ss_dssp BSSHHHHHHHHHHHHHHTT-TT-TBEEEEE--GGGGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHHHHS-----
T ss_pred CcchhHHHHHHHHHHHHccccc-eeeeeccccHHHhhhccCCeEEEeecccccccccccCHHHHHHHHHHHHHhc-----
Confidence 3445567899999999999996 99999999998743 22211111110000000000123333444444433
Q ss_pred cceEeeCCCCCCCCCccccCCCCCCc-CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCc
Q 042752 153 IPCFGFGDASTHDQDVFSFYPDDICC-NGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQ 231 (415)
Q Consensus 153 iP~fGFGa~~t~d~~vFsf~~~~p~c-~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~~~Y~VLLIITDG~ 231 (415)
|+... +||.. ..++++...=++.-.++++-|--.|.--.+.+.+-+++... =. |+|-=.|
T Consensus 150 -PIvsI---------------EDpf~edD~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~~-na--~llK~NQ 210 (295)
T PF00113_consen 150 -PIVSI---------------EDPFDEDDWEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKAC-NA--LLLKPNQ 210 (295)
T ss_dssp --EEEE---------------ESSS-TT-HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT---SE--EEE-HHH
T ss_pred -CeEEE---------------EccccccchHHHHHHHHhhhcceeeecccccccchhhhhccchhhhc-cc--hhhhhhh
Confidence 33333 22222 23455544444444467777765554333333333332211 12 3344444
Q ss_pred cccccccccCCCchhHHHHHHHHHHhccCCeEEEE
Q 042752 232 VTRSVDTQHGQLSSQEQKTIDAIVQASEFPLSIIL 266 (415)
Q Consensus 232 ItD~~d~~~~~~~~d~~eTidaIV~AS~lPLSIIi 266 (415)
|.- .-+|++++..|...-..+|+
T Consensus 211 igT------------vte~lea~~~a~~~g~~~vv 233 (295)
T PF00113_consen 211 IGT------------VTETLEAVKLAKSAGWGVVV 233 (295)
T ss_dssp HSS------------HHHHHHHHHHHHHTT-EEEE
T ss_pred hHH------------HHHHHHHHHHHHHCCceeec
Confidence 442 45889999999887777666
No 61
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=43.29 E-value=50 Score=32.49 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeCCccccccccccCCCchhHHHHHHHHHHhccCC---eEEEEEecc
Q 042752 204 APIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQASEFP---LSIILVGVG 270 (415)
Q Consensus 204 APVI~~ai~iv~~s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~AS~lP---LSIIiVGVG 270 (415)
-|++..+++.++++++.-|++=+++||.|+-- ++-....|.-|.+.- +.|-.+.=|
T Consensus 13 n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh-----------~~Hl~al~~~a~~~gv~~V~vH~f~DG 71 (223)
T PF06415_consen 13 NPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSH-----------IDHLFALIKLAKKQGVKKVYVHAFTDG 71 (223)
T ss_dssp SHHHHHHHHHHCCTT--EEEEEEESS-SSS-------------HHHHHHHHHHHHHTT-SEEEEEEEE-S
T ss_pred CHHHHHHHHHHHhcCCeEEEEEEecCCCcccc-----------HHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 37888999999888888999999999999852 444444444455433 555555444
No 62
>PLN00191 enolase
Probab=42.10 E-value=2.6e+02 Score=30.18 Aligned_cols=71 Identities=18% Similarity=0.346 Sum_probs=43.4
Q ss_pred ccccccHHHHHHHHHhcCCceeceEEEEeccCCCCCC--CCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC
Q 042752 77 DDNYKSLDQVTGALAHAGLESSNLIVGIDFTKSNEWT--GSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFD 148 (415)
Q Consensus 77 ~~~yssld~V~~aL~~~Gles~nliVaIDFT~SN~~t--g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD 148 (415)
.++-.-|+.|.+|+.++|++ -++.+|||+-+|--+. |+-.+..++-..-+...-..+++|+.+-.+++.|+
T Consensus 240 ~~~~eal~ll~eAi~~ag~~-~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~ 312 (457)
T PLN00191 240 QDNKEGLELLKEAIEKAGYT-GKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYP 312 (457)
T ss_pred CCHHHHHHHHHHHHHHcCCC-CceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCC
Confidence 34445688899999999998 4799999999985431 11000000000000111256888888888877665
No 63
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=40.69 E-value=57 Score=36.46 Aligned_cols=63 Identities=21% Similarity=0.362 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeCCcccccccc---ccC-CCchhHHHHHHHHHHhccC-CeEEEEEecccC
Q 042752 206 IIEMATTIVEKSGGQYHVLLIIADGQVTRSVDT---QHG-QLSSQEQKTIDAIVQASEF-PLSIILVGVGDG 272 (415)
Q Consensus 206 VI~~ai~iv~~s~~~Y~VLLIITDG~ItD~~d~---~~~-~~~~d~~eTidaIV~AS~l-PLSIIiVGVGd~ 272 (415)
.|.-|.+...+...+=-|||+|+||+-.|. .| .++ -|-.++++. |.....- ++=++=||||..
T Consensus 501 Al~wa~~rL~~R~e~rKiL~ViSDG~P~D~-~TlsvN~~~~l~~hLr~v---i~~~e~~~~vel~aigIg~D 568 (600)
T TIGR01651 501 ALMWAHQRLIARPEQRRILMMISDGAPVDD-STLSVNPGNYLERHLRAV---IEEIETRSPVELLAIGIGHD 568 (600)
T ss_pred HHHHHHHHHhcCcccceEEEEEeCCCcCCc-cccccCchhHHHHHHHHH---HHHHhccCCceEEEeecccc
Confidence 344444333334455689999999988761 12 112 232233333 3444443 888888888873
No 64
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=40.06 E-value=82 Score=31.39 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=17.2
Q ss_pred HHHHHHHHHhccCC----eEEEEEecccCCCccccccCC
Q 042752 248 QKTIDAIVQASEFP----LSIILVGVGDGPWDMMKEFDD 282 (415)
Q Consensus 248 ~eTidaIV~AS~lP----LSIIiVGVGd~~F~~Me~LDd 282 (415)
.+.++||..+...+ .=+|||+=|+|.++.|--||+
T Consensus 58 ~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~ 96 (319)
T PF02601_consen 58 ASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFND 96 (319)
T ss_pred HHHHHHHHHHHhccccccccEEEEecCCCChHHhcccCh
Confidence 44455555544332 445555555555555555544
No 65
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=38.31 E-value=38 Score=33.78 Aligned_cols=72 Identities=26% Similarity=0.441 Sum_probs=48.5
Q ss_pred HHHHHHHHhhCCceeecCCCChHHHHH-----------HHHHHH---HhcCCceEEEEEEeCCccccccccccCCCchhH
Q 042752 182 EEVLTQYREIVPSLRLAGPTSFAPIIE-----------MATTIV---EKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQE 247 (415)
Q Consensus 182 egVL~aYr~~l~~v~LsGPT~FAPVI~-----------~ai~iv---~~s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~ 247 (415)
++-|+.|++.-..++-+.-..+.|-|+ -+..++ +-.+.+|+|.+|+-||+.. |
T Consensus 89 ~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~-------------E 155 (243)
T COG3959 89 EEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELD-------------E 155 (243)
T ss_pred HHHHHHhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccc-------------c
Confidence 566778877655554444444444443 222222 3446789999999999986 5
Q ss_pred HHHHHHHHHhccCCeEEEE
Q 042752 248 QKTIDAIVQASEFPLSIIL 266 (415)
Q Consensus 248 ~eTidaIV~AS~lPLSIIi 266 (415)
-++-+|+..|+++-|.=+|
T Consensus 156 G~~WEAam~Aah~~L~NLi 174 (243)
T COG3959 156 GQVWEAAMTAAHYKLDNLI 174 (243)
T ss_pred ccHHHHHHHHHHhccCcEE
Confidence 7899999999998877444
No 66
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=37.88 E-value=2.9e+02 Score=26.86 Aligned_cols=97 Identities=25% Similarity=0.403 Sum_probs=55.7
Q ss_pred cHHHHHHHHHhcCCceeceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCC
Q 042752 82 SLDQVTGALAHAGLESSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDA 161 (415)
Q Consensus 82 sld~V~~aL~~~Gles~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~ 161 (415)
++++| .+|.++|.+ |||+|.|.... |.+|+- .-+.|+. .| ++-+++
T Consensus 53 T~~ev-~~l~~aGad----IIAlDaT~R~R--------p~~l~~-------li~~i~~------~~-------~l~MAD- 98 (192)
T PF04131_consen 53 TLKEV-DALAEAGAD----IIALDATDRPR--------PETLEE-------LIREIKE------KY-------QLVMAD- 98 (192)
T ss_dssp SHHHH-HHHHHCT-S----EEEEE-SSSS---------SS-HHH-------HHHHHHH------CT-------SEEEEE-
T ss_pred CHHHH-HHHHHcCCC----EEEEecCCCCC--------CcCHHH-------HHHHHHH------hC-------cEEeee-
Confidence 67888 688899998 69999997662 234442 2222222 22 333333
Q ss_pred CCCCCCccccCCCCCCcCCHHHHHHHHHhhCCce--eecCCCChH----HHHHHHHHHHHhcCCceEEEEEEeCCcccc
Q 042752 162 STHDQDVFSFYPDDICCNGFEEVLTQYREIVPSL--RLAGPTSFA----PIIEMATTIVEKSGGQYHVLLIIADGQVTR 234 (415)
Q Consensus 162 ~t~d~~vFsf~~~~p~c~G~egVL~aYr~~l~~v--~LsGPT~FA----PVI~~ai~iv~~s~~~Y~VLLIITDG~ItD 234 (415)
|.-+|+.+++.+--+--| .|+|-|... |=++.+.++++. + . -+|..|.|..
T Consensus 99 ----------------ist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~-~-~----pvIaEGri~t 155 (192)
T PF04131_consen 99 ----------------ISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA-D-V----PVIAEGRIHT 155 (192)
T ss_dssp -----------------SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT-T-S----EEEEESS--S
T ss_pred ----------------cCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC-C-C----cEeecCCCCC
Confidence 456777877776655444 477776654 667777777664 2 1 2889999985
No 67
>PTZ00081 enolase; Provisional
Probab=35.18 E-value=4.1e+02 Score=28.61 Aligned_cols=67 Identities=16% Similarity=0.286 Sum_probs=42.3
Q ss_pred cccccHHHHHHHHHhcCCceeceEEEEeccCCCCCCCC-CCCCCCCccccC----C-CCCHHHHHHHHHhhcccccC
Q 042752 78 DNYKSLDQVTGALAHAGLESSNLIVGIDFTKSNEWTGS-RSFNRRSLHHIG----H-GQNPYEQAISIIGKTLSAFD 148 (415)
Q Consensus 78 ~~yssld~V~~aL~~~Gles~nliVaIDFT~SN~~tg~-~s~~~~SLHyi~----~-~~N~YqqAI~~Ig~iL~~YD 148 (415)
+.-.-|+.|..|.+++|++ -++.+|||+-+|.-|..+ ..+ .+.+.. . ..-.-++.|+-+.+.++.|+
T Consensus 226 ~~eeal~ll~eAi~~ag~~-~~v~i~lD~Aase~~~~~~~~Y---~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~ 298 (439)
T PTZ00081 226 DPEEALDLLVEAIKKAGYE-GKVKICMDVAASEFYDKEKKVY---DLDFKNPNNDKSNKLTGEELVELYLDLVKKYP 298 (439)
T ss_pred CHHHHHHHHHHHHHHcCCc-CceEEEEehhhhhhhhccCCce---eeeeccccCccccccCHHHHHHHHHHHHhcCC
Confidence 3445578888999999998 479999999988643100 001 111111 0 12355777777778888875
No 68
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=35.08 E-value=1.4e+02 Score=31.36 Aligned_cols=144 Identities=17% Similarity=0.265 Sum_probs=77.4
Q ss_pred cCCceeceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccC
Q 042752 93 AGLESSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFY 172 (415)
Q Consensus 93 ~Gles~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~ 172 (415)
-|+- -.|+|.||++..+.. +-+| +|-...+|+-+-..+..|=+.|-|.-.||=.....-.+...-.
T Consensus 57 ~Gii-Rhl~iviD~S~am~e--------~Df~-----P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~l 122 (378)
T KOG2807|consen 57 KGII-RHLYIVIDCSRAMEE--------KDFR-----PSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTDL 122 (378)
T ss_pred hhhh-eeEEEEEEhhhhhhh--------ccCC-----chHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHHh
Confidence 4663 489999999999864 2222 6777777777777666666667777777732110001111100
Q ss_pred CCCCCcCCHHHHHHHHHhhCCcee-ecCCCChHHHHHHHHHHHHhcCC--ceEEEEEEeCCccccccccccCCCchhHHH
Q 042752 173 PDDICCNGFEEVLTQYREIVPSLR-LAGPTSFAPIIEMATTIVEKSGG--QYHVLLIIADGQVTRSVDTQHGQLSSQEQK 249 (415)
Q Consensus 173 ~~~p~c~G~egVL~aYr~~l~~v~-LsGPT~FAPVI~~ai~iv~~s~~--~Y~VLLIITDG~ItD~~d~~~~~~~~d~~e 249 (415)
..|| + .-.+++..++ -+|--+.---++.|++..+.-.+ .=-||+|+.-=.-.|- -|.-+
T Consensus 123 tgnp-----~----~hI~aL~~~~~~~g~fSLqNaLe~a~~~Lk~~p~H~sREVLii~sslsT~DP---------gdi~~ 184 (378)
T KOG2807|consen 123 TGNP-----R----IHIHALKGLTECSGDFSLQNALELAREVLKHMPGHVSREVLIIFSSLSTCDP---------GDIYE 184 (378)
T ss_pred cCCH-----H----HHHHHHhcccccCCChHHHHHHHHHHHHhcCCCcccceEEEEEEeeecccCc---------ccHHH
Confidence 1111 1 1122333333 34433444445555555444333 2368888876544442 24789
Q ss_pred HHHHHHHhccCCeEEEEEeccc
Q 042752 250 TIDAIVQASEFPLSIILVGVGD 271 (415)
Q Consensus 250 TidaIV~AS~lPLSIIiVGVGd 271 (415)
||+.++.. + |=+-+||+-.
T Consensus 185 tI~~lk~~-k--IRvsvIgLsa 203 (378)
T KOG2807|consen 185 TIDKLKAY-K--IRVSVIGLSA 203 (378)
T ss_pred HHHHHHhh-C--eEEEEEeech
Confidence 99999854 3 4444566654
No 69
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=34.69 E-value=1.6e+02 Score=31.37 Aligned_cols=62 Identities=24% Similarity=0.283 Sum_probs=41.7
Q ss_pred CCceeecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccccccccCCCchhHHHHHHHHHHhccCCeEEEEEeccc
Q 042752 192 VPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQASEFPLSIILVGVGD 271 (415)
Q Consensus 192 l~~v~LsGPT~FAPVI~~ai~iv~~s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~AS~lPLSIIiVGVGd 271 (415)
+-.|++.- -++.-+++++....++.|-. .+.+|++||..+ +.++..+. +...+ +..-|||.
T Consensus 264 ~~GVR~DS-Gd~~~~~~kvr~~ld~~G~~-~~~Ii~Sdg~ld--------------e~~i~~l~-~~g~~--~d~FGvGT 324 (405)
T COG1488 264 LDGVRLDS-GDPRELSEKVRAHLDKLGYD-PVKIIVSDGLLD--------------EKIIALLR-AFGAR--NDAFGVGT 324 (405)
T ss_pred ceEEECCC-CCHHHHHHHHHHHHHHcCCC-ceEEEEeCCcch--------------HHHHHHHH-HhCCC--ccEeccch
Confidence 44556544 56777777777777776543 388999999753 45555554 46666 88889986
Q ss_pred C
Q 042752 272 G 272 (415)
Q Consensus 272 ~ 272 (415)
.
T Consensus 325 ~ 325 (405)
T COG1488 325 N 325 (405)
T ss_pred h
Confidence 4
No 70
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=30.76 E-value=4e+02 Score=25.46 Aligned_cols=162 Identities=12% Similarity=0.161 Sum_probs=83.0
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC--CCCccceEeeCCCCC------C---CCC
Q 042752 99 NLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFD--EDNLIPCFGFGDAST------H---DQD 167 (415)
Q Consensus 99 nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD--~Dk~iP~fGFGa~~t------~---d~~ 167 (415)
.+++.||.|..- +. .+..+.++++|...|+... ++.+|-...|+...+ . .+.
T Consensus 5 ~~vFvID~s~~a---------------i~--~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~~~V~~~~~~~~~~~~~~ 67 (239)
T cd01468 5 VFVFVIDVSYEA---------------IK--EGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSSDLAQPKM 67 (239)
T ss_pred EEEEEEEcchHh---------------cc--ccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCeEEEEECCCCCCCCeE
Confidence 468889988641 11 2445777777777777665 788888888876531 0 000
Q ss_pred -ccccCCCCC---CcCC----HHHH---HHHHHhhCCcee-----ecCCCChHHHHHHHHHHHHhc--CCceEEEEEEeC
Q 042752 168 -VFSFYPDDI---CCNG----FEEV---LTQYREIVPSLR-----LAGPTSFAPIIEMATTIVEKS--GGQYHVLLIIAD 229 (415)
Q Consensus 168 -vFsf~~~~p---~c~G----~egV---L~aYr~~l~~v~-----LsGPT~FAPVI~~ai~iv~~s--~~~Y~VLLIITD 229 (415)
|++ +-+++ ...+ +.+. ++..-+.++... -....++.+.++.|..+.+.. +| .| ++++.
T Consensus 68 ~v~~-dl~d~f~p~~~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~gG--kI-~~f~s 143 (239)
T cd01468 68 YVVS-DLKDVFLPLPDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTFAGG--RI-IVFQG 143 (239)
T ss_pred EEeC-CCccCcCCCcCceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcCCCc--eE-EEEEC
Confidence 110 11121 1112 2222 222222222221 123488999999999999877 55 34 33443
Q ss_pred Ccc-------cccccccc-------CCCchhHHHHHHHHHHhccCCeEEEEEecccC--CCccccccC
Q 042752 230 GQV-------TRSVDTQH-------GQLSSQEQKTIDAIVQASEFPLSIILVGVGDG--PWDMMKEFD 281 (415)
Q Consensus 230 G~I-------tD~~d~~~-------~~~~~d~~eTidaIV~AS~lPLSIIiVGVGd~--~F~~Me~LD 281 (415)
|-. ....+..+ .-+.+..+--.+.-.++++.-+|+=+...+.. +...|..|=
T Consensus 144 g~pt~GpG~l~~~~~~~~~~~~~e~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~~dl~~l~~l~ 211 (239)
T cd01468 144 GLPTVGPGKLKSREDKEPIRSHDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDYVDVATLKQLA 211 (239)
T ss_pred CCCCCCCCccccCcccccCCCccchhcccccHHHHHHHHHHHHHcCeEEEEEeccccccCHHHhhhhh
Confidence 433 22111101 11233333334555667677777777666654 444455553
No 71
>PTZ00378 hypothetical protein; Provisional
Probab=30.14 E-value=8.1e+02 Score=27.30 Aligned_cols=146 Identities=16% Similarity=0.208 Sum_probs=79.8
Q ss_pred ccHHHHHHHHHhcCCce-eceEEEEeccCCCC------------CCCCCCCC---CCCccccCCCCCHHHHHHHHHhhcc
Q 042752 81 KSLDQVTGALAHAGLES-SNLIVGIDFTKSNE------------WTGSRSFN---RRSLHHIGHGQNPYEQAISIIGKTL 144 (415)
Q Consensus 81 ssld~V~~aL~~~Gles-~nliVaIDFT~SN~------------~tg~~s~~---~~SLHyi~~~~N~YqqAI~~Ig~iL 144 (415)
.-|+.|+.|++++|++- -.+.+|+|+-+|-- |.... .+ ...|+ -+.....=++-|+-...++
T Consensus 262 eAL~li~eAi~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~k-~~~e~~Y~l~-~~~~~~t~~elieyy~~li 339 (518)
T PTZ00378 262 DAVKLATEALRAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEAK-DDCEVLYSLF-PGEPDVTGDQLSEYVREQL 339 (518)
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEEEecccccccccccccccchhhcccc-CCCceeeeec-CCCCCCCHHHHHHHHHHHH
Confidence 34778999999999983 37999999999975 42100 00 01121 1111123455566666666
Q ss_pred cccCCCCccceEeeCCCCCCCCCccccCCCCCCc-CCHHHHHHHHHhhCCceeecCCCChH----HHHHHHHHHHHhcCC
Q 042752 145 SAFDEDNLIPCFGFGDASTHDQDVFSFYPDDICC-NGFEEVLTQYREIVPSLRLAGPTSFA----PIIEMATTIVEKSGG 219 (415)
Q Consensus 145 ~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~c-~G~egVL~aYr~~l~~v~LsGPT~FA----PVI~~ai~iv~~s~~ 219 (415)
+.|.+- +.++ +||.+ ..++++-..-.+.-.+++|.|--.|. ..|++.++.---+
T Consensus 340 ~kYP~i-----------------IvsI--EDp~~E~D~~gw~~lt~~lG~~iqivGDDL~vT~n~~ri~~gi~~~~~N-- 398 (518)
T PTZ00378 340 QAVPDI-----------------VVYV--EDTHCDEDTFGLQRLQAALGDSIVLSGVDVYARSEYKKVESGLRGLWTS-- 398 (518)
T ss_pred HHCCCc-----------------eEEE--ecCCCchHHHHHHHHHHHhCCeEEEECCCcCcCCCHHHHHHHHhcCCCc--
Confidence 655310 1111 44444 24455555444455678888874443 3455554321111
Q ss_pred ceEEEEEEeCCccccccccccCCCchhHHHHHHHHHHhccCCeEEE
Q 042752 220 QYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQASEFPLSII 265 (415)
Q Consensus 220 ~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~AS~lPLSII 265 (415)
- ++|==.||-- .-+|++++.-|.+.-...|
T Consensus 399 --a--iLIK~NQIGT------------lSEtieav~lA~~~g~~~v 428 (518)
T PTZ00378 399 --N--IVLNPCAIGT------------LSDVVEIVRAVGEDEGRAV 428 (518)
T ss_pred --e--EEEcccccee------------HHHHHHHHHHHHHcCCcEE
Confidence 1 4444445542 4688888888877666555
No 72
>PRK00077 eno enolase; Provisional
Probab=29.57 E-value=4.5e+02 Score=27.86 Aligned_cols=63 Identities=16% Similarity=0.296 Sum_probs=40.6
Q ss_pred ccccHHHHHHHHHhcCCce-eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC
Q 042752 79 NYKSLDQVTGALAHAGLES-SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFD 148 (415)
Q Consensus 79 ~yssld~V~~aL~~~Gles-~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD 148 (415)
+-.-|+.|.+|++++|++- -++.++||+.+|--|.+. .++ + ++..=..++++..+.++++.|+
T Consensus 215 ~~e~l~~lreAi~~ag~~~G~di~l~lD~aas~~~~~~-~y~-----~-~~~~~s~~e~~~~~~~l~e~y~ 278 (425)
T PRK00077 215 NEEALDLILEAIEKAGYKPGEDIALALDCAASEFYKDG-KYV-----L-EGEGLTSEEMIDYLAELVDKYP 278 (425)
T ss_pred hHHHHHHHHHHHHHhcCCCCCceEEEEehhhhhcccCC-eee-----c-cCCcCCHHHHHHHHHHHHhhCC
Confidence 3445778888999999972 479999999887432100 011 1 1111234788888888888876
No 73
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=28.42 E-value=5.2e+02 Score=24.57 Aligned_cols=155 Identities=17% Similarity=0.280 Sum_probs=80.7
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC--CCCccceEeeCCCCC-----C--C----
Q 042752 99 NLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFD--EDNLIPCFGFGDAST-----H--D---- 165 (415)
Q Consensus 99 nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD--~Dk~iP~fGFGa~~t-----~--d---- 165 (415)
.+++.||.|...- ..+..+.++++|-.+|.... ++-+|-+..|+.... . .
T Consensus 5 ~y~FvID~s~~av-----------------~~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~ 67 (243)
T PF04811_consen 5 VYVFVIDVSYEAV-----------------QSGLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLSSSLSQPQM 67 (243)
T ss_dssp EEEEEEE-SHHHH-----------------HHTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETTTTSSSTEE
T ss_pred EEEEEEECchhhh-----------------hccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECCCCcCCCcc
Confidence 5788899885521 12556888888888888887 888888888876531 0 0
Q ss_pred ------CCccccCCCC-----CCc-CCHHHHHHHHHhhCCce-eecCCCChHHHHHHHHHHHH--hcCCceEEEEEEeC-
Q 042752 166 ------QDVFSFYPDD-----ICC-NGFEEVLTQYREIVPSL-RLAGPTSFAPIIEMATTIVE--KSGGQYHVLLIIAD- 229 (415)
Q Consensus 166 ------~~vFsf~~~~-----p~c-~G~egVL~aYr~~l~~v-~LsGPT~FAPVI~~ai~iv~--~s~~~Y~VLLIITD- 229 (415)
.+.|.-.+++ .+| .-++++|+.-.+..+.. .-....++...|+.|..+.+ ..+| .|+++.+-
T Consensus 68 ~v~~dl~~~~~p~~~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~gG--kI~~F~s~~ 145 (243)
T PF04811_consen 68 IVVSDLDDPFIPLPDGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRNTGG--KILVFTSGP 145 (243)
T ss_dssp EEEHHTTSHHSSTSSSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHTS-E--EEEEEESS-
T ss_pred cchHHHhhcccCCcccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccccCC--EEEEEeccC
Confidence 0111111111 112 23555666555544433 13355899999999999988 5555 56555543
Q ss_pred ------CccccccccccCC--------CchhHHHHHHHHHHhccCCeEEEEEecccC
Q 042752 230 ------GQVTRSVDTQHGQ--------LSSQEQKTIDAIVQASEFPLSIILVGVGDG 272 (415)
Q Consensus 230 ------G~ItD~~d~~~~~--------~~~d~~eTidaIV~AS~lPLSIIiVGVGd~ 272 (415)
|.+....++.+.. ++++.+--.+.-.+++..-+++=+.-.+..
T Consensus 146 pt~G~Gg~l~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~ 202 (243)
T PF04811_consen 146 PTYGPGGSLKKREDSSHYDTEKEKALLLPPANEFYKKLAEECSKQGISVDLFVFSSD 202 (243)
T ss_dssp --SSSTTSS-SBTTSCCCCHCTTHHCHSHSSSHHHHHHHHHHHHCTEEEEEEEECSS
T ss_pred CCCCCCceecccccccccccccchhhhccccchHHHHHHHHHHhcCCEEEEEeecCC
Confidence 2222211111111 112222335555667788888777776654
No 74
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=27.13 E-value=1.1e+02 Score=31.07 Aligned_cols=15 Identities=33% Similarity=0.725 Sum_probs=8.9
Q ss_pred CCceEEE--EEEeCCcc
Q 042752 218 GGQYHVL--LIIADGQV 232 (415)
Q Consensus 218 ~~~Y~VL--LIITDG~I 232 (415)
.+.|-|+ |+=++|..
T Consensus 216 ~~eyivvtilva~~g~~ 232 (289)
T PF07466_consen 216 PNEYIVVTILVAAEGKL 232 (289)
T ss_pred CCceEEEEEEEEecCCc
Confidence 3567766 34466765
No 75
>COG4573 GatZ Predicted tagatose 6-phosphate kinase [Carbohydrate transport and metabolism]
Probab=25.62 E-value=4.4e+02 Score=28.17 Aligned_cols=107 Identities=22% Similarity=0.336 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeCCccccccccccCCCchhHHHHHHHHHHhccCCeEEEEEe---cccCCCccccccC
Q 042752 205 PIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQASEFPLSIILVG---VGDGPWDMMKEFD 281 (415)
Q Consensus 205 PVI~~ai~iv~~s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~AS~lPLSIIiVG---VGd~~F~~Me~LD 281 (415)
=||+.|++.+..++ =-||+=-|..||+. ...--|--+.|....+.+|.+.-.+|..-+|.| +|-.+|..+.
T Consensus 28 lViEAAl~~a~~~~--~~vLIEAT~NQVnq-~GGYTGMTP~DFr~fV~aiA~~~gfp~e~liLGGDHLGPN~Wq~~p--- 101 (426)
T COG4573 28 LVIEAALRFARASQ--TPVLIEATSNQVNQ-FGGYTGMTPADFRGFVFAIADKLGFPRERLILGGDHLGPNPWQHLP--- 101 (426)
T ss_pred HHHHHHHHHHhccC--CceEeecccccccc-cCCcCCCChHHHHHHHHHHHHHhCCcHHHHhccCCcCCCCccccCC---
Confidence 48999999887664 35767677777764 222234456789999999999999999999887 4444443211
Q ss_pred CCCCCCcccceecccchhhhhhccccchhHHHHHHHHHHHhHHHHHHHHHhCC----CCCCCCCCCCCCCCCCCC
Q 042752 282 DNIPARAFDNFQFVNFTEIMSKNMDLSRKETEFALAALMEIPSQYKATLELGI----LGHAVNVEKTSNHAPFVG 352 (415)
Q Consensus 282 d~~~~R~rDNvQFV~f~di~~k~~~~~~~e~~LA~~aL~EIP~Q~~ay~~lgi----L~~~~~~~~~~~~~~~p~ 352 (415)
|.++|.+--.-+++|.+.|. |++.. |-+-++.||++
T Consensus 102 ---------------------------------A~eAM~ka~~mv~AYv~AGF~KIHLDaSM--~CA~dp~pL~d 141 (426)
T COG4573 102 ---------------------------------AAEAMAKADDLVKAYVAAGFTKIHLDASM--SCAGDPIPLDD 141 (426)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHHcCceeeeccccc--ccCCCCCCCCc
Confidence 23455555555677877764 56655 66667776654
No 76
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=25.55 E-value=5.6e+02 Score=23.96 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=32.2
Q ss_pred ceeecCCCChHHHHHHHHHHHHhcCCceEEEE-EEeCCccccccccccCCCchhHHHHHHHHHHhccCCeEEEEEeccc
Q 042752 194 SLRLAGPTSFAPIIEMATTIVEKSGGQYHVLL-IIADGQVTRSVDTQHGQLSSQEQKTIDAIVQASEFPLSIILVGVGD 271 (415)
Q Consensus 194 ~v~LsGPT~FAPVI~~ai~iv~~s~~~Y~VLL-IITDG~ItD~~d~~~~~~~~d~~eTidaIV~AS~lPLSIIiVGVGd 271 (415)
.|-|-|.+. .|++++.+..++. |.-|- .=.+|-.++ .++++.++.|.++. =-|++||+|.
T Consensus 50 ~vfllG~~~--~v~~~~~~~l~~~---yP~l~i~g~~g~f~~----------~~~~~i~~~I~~s~---~dil~VglG~ 110 (177)
T TIGR00696 50 PIFLYGGKP--DVLQQLKVKLIKE---YPKLKIVGAFGPLEP----------EERKAALAKIARSG---AGIVFVGLGC 110 (177)
T ss_pred eEEEECCCH--HHHHHHHHHHHHH---CCCCEEEEECCCCCh----------HHHHHHHHHHHHcC---CCEEEEEcCC
Confidence 445555553 3677777666553 32221 112665542 12455566666532 3588888885
No 77
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=25.46 E-value=1.7e+02 Score=30.71 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCCceEEEEE--EeCCccccccccccCCCchhHHHHHHHHHHhccCCeEEEEEecccCCCccccccCC
Q 042752 205 PIIEMATTIVEKSGGQYHVLLI--IADGQVTRSVDTQHGQLSSQEQKTIDAIVQASEFPLSIILVGVGDGPWDMMKEFDD 282 (415)
Q Consensus 205 PVI~~ai~iv~~s~~~Y~VLLI--ITDG~ItD~~d~~~~~~~~d~~eTidaIV~AS~lPLSIIiVGVGd~~F~~Me~LDd 282 (415)
-+|+.+++.+++......|.++ ..-|.-. ..+.++||..+.....=+||||=|.|..++|--||+
T Consensus 147 Aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A-------------~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~ 213 (438)
T PRK00286 147 AAIRDILTVLRRRFPLVEVIIYPTLVQGEGA-------------AASIVAAIERANARGEDVLIVARGGGSLEDLWAFND 213 (438)
T ss_pred HHHHHHHHHHHhcCCCCeEEEecCcCcCccH-------------HHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCc
Confidence 3566666666654332344333 2334322 478888888887766788999999998888888887
Q ss_pred C
Q 042752 283 N 283 (415)
Q Consensus 283 ~ 283 (415)
.
T Consensus 214 e 214 (438)
T PRK00286 214 E 214 (438)
T ss_pred H
Confidence 3
No 78
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=24.54 E-value=3.3e+02 Score=27.68 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=48.3
Q ss_pred CHHHHHHHHHhh-----CCceeecCCCChHHHHHHHHHHHHhcCCc-eEEEEEEeCCccccccccccCCCchhHHHHHHH
Q 042752 180 GFEEVLTQYREI-----VPSLRLAGPTSFAPIIEMATTIVEKSGGQ-YHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDA 253 (415)
Q Consensus 180 G~egVL~aYr~~-----l~~v~LsGPT~FAPVI~~ai~iv~~s~~~-Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTida 253 (415)
|+...++.+++. +-.|++.- -....+++++.+..++.+.. =++.+|++||-++ ++.++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~gvR~DS-Gd~~~~~~~~~~~l~~~g~~~~~~~ii~sg~l~~--------------~~~i~~ 311 (343)
T cd01567 247 GFLNALKLAKALGAGGGLLGVRLDS-GDPVELIKKVRKHLDELGIDLNKKKIIISGDLDT--------------EEAIEL 311 (343)
T ss_pred HHHHHHHHHHhhcccCCCcEEECCC-CCHHHHHHHHHHHHHHcCCCCCCeEEEEECCCCH--------------HHHHHH
Confidence 444555555554 23455533 45566777788777776651 2555888888653 466777
Q ss_pred HHHhccCCeEEEEEecccC
Q 042752 254 IVQASEFPLSIILVGVGDG 272 (415)
Q Consensus 254 IV~AS~lPLSIIiVGVGd~ 272 (415)
+..+-. -.+++.|||..
T Consensus 312 ~~~~~~--~~~~~fGvGt~ 328 (343)
T cd01567 312 LLEQGA--SPNDAFGVGTS 328 (343)
T ss_pred HHHcCC--CcCcEEeeCcc
Confidence 776655 56888999974
No 79
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=23.66 E-value=2e+02 Score=31.36 Aligned_cols=64 Identities=25% Similarity=0.306 Sum_probs=36.2
Q ss_pred CeEEEEEecccCCCccccccCCCCCCCcccceeccc---chhhhhhccccchhHHHHHHHHHHHhHHHHHHHHHhCCC
Q 042752 261 PLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVN---FTEIMSKNMDLSRKETEFALAALMEIPSQYKATLELGIL 335 (415)
Q Consensus 261 PLSIIiVGVGd~~F~~Me~LDd~~~~R~rDNvQFV~---f~di~~k~~~~~~~e~~LA~~aL~EIP~Q~~ay~~lgiL 335 (415)
-|+||-|- ..+-..|+++- |-.||.. +.|++.++ ........-+++++-|+=.-++++...|+.
T Consensus 146 algWVav~--~tP~p~vke~~--------daa~FY~NrvLkEyk~~D-~~hveWvKa~l~l~~eL~~YVk~hhtTGl~ 212 (480)
T KOG2675|consen 146 ALGWVAVK--PTPAPYVKEFK--------DAAQFYTNRVLKEYKEKD-PRHVEWVKAYLALFLELQAYVKEHHTTGLV 212 (480)
T ss_pred cceeEecC--CCCchHHHHHH--------HHHHHHHHHHHHHhccCC-hhHHHHHHHHHHHHHHHHHHHHHhccccce
Confidence 46676654 44444555543 4567754 22332221 122345566677888877777777777876
No 80
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=22.60 E-value=2.3e+02 Score=34.67 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=4.7
Q ss_pred ccccccccccc
Q 042752 71 RKYSRIDDNYK 81 (415)
Q Consensus 71 ~~~~~I~~~ys 81 (415)
..|+.-.-.|+
T Consensus 1569 psysptspsys 1579 (1605)
T KOG0260|consen 1569 PSYSPTSPSYS 1579 (1605)
T ss_pred CCCCCCCCCcc
Confidence 34444444444
No 81
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.98 E-value=81 Score=33.13 Aligned_cols=52 Identities=27% Similarity=0.321 Sum_probs=33.1
Q ss_pred eeecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccccccccCCCchhHHHHHHHHHHhccCCeEEEEEecc
Q 042752 195 LRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQASEFPLSIILVGVG 270 (415)
Q Consensus 195 v~LsGPT~FAPVI~~ai~iv~~s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~AS~lPLSIIiVGVG 270 (415)
+.=+|-|.|.||++.. ++.-- -.+|+.+|||--+- . ..+-.-|+=||+-|-|
T Consensus 322 ~~ggG~Tdf~Pvfeyl----ek~~~-~~~lIyfTDG~gd~------------p-------~~~r~~~~lwVl~~~~ 373 (396)
T COG3864 322 LDGGGGTDFSPVFEYL----EKNRM-ECFLIYFTDGMGDQ------------P-------LVFRPKVLLWVLTGAK 373 (396)
T ss_pred cCCCCCccccHHHHHH----Hhhcc-cceEEEEccCCCCc------------c-------cccCCcceEEEecCCc
Confidence 3335679999999854 33322 27889999996431 0 1133456888887765
No 82
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=21.49 E-value=3.8e+02 Score=27.02 Aligned_cols=172 Identities=20% Similarity=0.405 Sum_probs=97.1
Q ss_pred ccccHHHHHHHHHhcCCce-----eceEEEEeccCCCCCCCCCCCCCCCccccC-C---CCCHHHHHHHHHhhcccccCC
Q 042752 79 NYKSLDQVTGALAHAGLES-----SNLIVGIDFTKSNEWTGSRSFNRRSLHHIG-H---GQNPYEQAISIIGKTLSAFDE 149 (415)
Q Consensus 79 ~yssld~V~~aL~~~Gles-----~nliVaIDFT~SN~~tg~~s~~~~SLHyi~-~---~~N~YqqAI~~Ig~iL~~YD~ 149 (415)
.+++=.+.-..|...|.+. +.+|=|+.|-+--+.-.+-+.+-++|- ++ + ..|+|++++++|-..+-+...
T Consensus 58 ~~dTP~~aL~klk~~gy~eviiQ~lhiIpG~EyEklvr~V~~~~~dF~~lk-ig~PlLy~k~DYe~~v~aik~~~ppl~k 136 (265)
T COG4822 58 DFDTPIQALNKLKDQGYEEVIIQPLHIIPGIEYEKLVREVNKYSNDFKRLK-IGRPLLYYKNDYEICVEAIKDQIPPLNK 136 (265)
T ss_pred ccCCHHHHHHHHHHccchheeeeeeeecCchHHHHHHHHHHHHhhhhheee-cCCceeechhhHHHHHHHHHHhcCCcCc
Confidence 3667777777888888764 555556655431000000000112222 11 1 259999999999999999988
Q ss_pred CCccceEeeCCCCCCCCCccccCCCCCCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCC-ceEEE-EEE
Q 042752 150 DNLIPCFGFGDASTHDQDVFSFYPDDICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGG-QYHVL-LII 227 (415)
Q Consensus 150 Dk~iP~fGFGa~~t~d~~vFsf~~~~p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~~-~Y~VL-LII 227 (415)
|...=..|=|....-. .+. .=++-++..|+- -.|.+.. +.=-|-++.+++..++++- .-++. |.+
T Consensus 137 ~e~~vlmgHGt~h~s~-~~Y---------acLd~~~~~~~f--~~v~v~~-ve~yP~~d~vi~~l~~~~~~~v~L~PlMl 203 (265)
T COG4822 137 DEILVLMGHGTDHHSN-AAY---------ACLDHVLDEYGF--DNVFVAA-VEGYPLVDTVIEYLRKNGIKEVHLIPLML 203 (265)
T ss_pred CeEEEEEecCCCccHH-HHH---------HHHHHHHHhcCC--CceEEEE-ecCCCcHHHHHHHHHHcCCceEEEeeeEE
Confidence 8888777887754211 111 012334433321 1222211 1113566778888777642 23433 566
Q ss_pred eCC--ccccccccccCCCchhHHHHHHHHHHhccCCeEEEEEecccC
Q 042752 228 ADG--QVTRSVDTQHGQLSSQEQKTIDAIVQASEFPLSIILVGVGDG 272 (415)
Q Consensus 228 TDG--~ItD~~d~~~~~~~~d~~eTidaIV~AS~lPLSIIiVGVGd~ 272 (415)
+-| .+.|+ -.|-+.+-..|-++..++.-..+=|+|.-
T Consensus 204 vAG~Ha~nDM--------asddedswk~il~~~G~~v~~~l~GLGE~ 242 (265)
T COG4822 204 VAGDHAKNDM--------ASDDEDSWKNILEKNGFKVEVYLHGLGEN 242 (265)
T ss_pred eechhhhhhh--------cccchHHHHHHHHhCCceeEEEeecCCCc
Confidence 666 34442 12234777788888899999999999963
No 83
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=21.20 E-value=3.7e+02 Score=26.77 Aligned_cols=84 Identities=20% Similarity=0.413 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHhhCCceee-------cCCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCcc--ccccccccCCCch-h
Q 042752 179 NGFEEVLTQYREIVPSLRL-------AGPTSFAPIIEMATTIVEKSG--GQYHVLLIIADGQV--TRSVDTQHGQLSS-Q 246 (415)
Q Consensus 179 ~G~egVL~aYr~~l~~v~L-------sGPT~FAPVI~~ai~iv~~s~--~~Y~VLLIITDG~I--tD~~d~~~~~~~~-d 246 (415)
.|+.+++..-++..|.+.+ -|-..-..|++ |++.+.+.+ ..|=| |||+-|+= .| |-. |
T Consensus 26 Aa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~-al~~~~~~~~~~~~Dv-iii~RGGGs~eD--------L~~FN 95 (319)
T PF02601_consen 26 AAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVS-ALRKANEMGQADDFDV-IIIIRGGGSIED--------LWAFN 95 (319)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHH-HHHHHHhccccccccE-EEEecCCCChHH--------hcccC
Confidence 4667776666666665432 24444444554 444444332 34666 66666643 33 222 4
Q ss_pred HHHHHHHHHHhccCCeEEEEEecccC-CCcc
Q 042752 247 EQKTIDAIVQASEFPLSIILVGVGDG-PWDM 276 (415)
Q Consensus 247 ~~eTidaIV~AS~lPLSIIiVGVGd~-~F~~ 276 (415)
.++..+||.+ |..| ||.|||-+ ||..
T Consensus 96 ~e~varai~~-~~~P---visaIGHe~D~ti 122 (319)
T PF02601_consen 96 DEEVARAIAA-SPIP---VISAIGHETDFTI 122 (319)
T ss_pred hHHHHHHHHh-CCCC---EEEecCCCCCchH
Confidence 5777777774 5788 89999964 5433
No 84
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=20.65 E-value=1.1e+02 Score=28.17 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=22.5
Q ss_pred chhHHHHHHHHHHhccCCeEEEEEe
Q 042752 244 SSQEQKTIDAIVQASEFPLSIILVG 268 (415)
Q Consensus 244 ~~d~~eTidaIV~AS~lPLSIIiVG 268 (415)
|+.|++.++.|..++..|..|+|.|
T Consensus 5 s~~m~~~~~~~~~~a~~~~pVlI~G 29 (168)
T PF00158_consen 5 SPAMKRLREQAKRAASSDLPVLITG 29 (168)
T ss_dssp SHHHHHHHHHHHHHTTSTS-EEEEC
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEc
Confidence 5679999999999999999999998
No 85
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=20.59 E-value=1.7e+02 Score=30.20 Aligned_cols=47 Identities=17% Similarity=0.364 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeCCccccccccccCCCchhHHHHHHHHHHhccCCeEE
Q 042752 204 APIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQASEFPLSI 264 (415)
Q Consensus 204 APVI~~ai~iv~~s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~AS~lPLSI 264 (415)
..+|++..+++++++.++.+ =|+.|+.- .|++.++.|.+.+++||+|
T Consensus 55 e~Li~~~~elsd~tg~p~~~-~v~~~~~e-------------am~k~I~~v~~~~d~Pl~I 101 (308)
T PRK00979 55 EALINRQEELSDKTGNPALL-DVVGESPE-------------AMEKYIDFVSEITDLPFLI 101 (308)
T ss_pred HHHHHHHHHHHHHhCCCeEE-EEecChHH-------------HHHHHHHHHHhcCCCCEEE
Confidence 44678888888888765544 66676642 3899999999999999986
No 86
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=20.07 E-value=2.5e+02 Score=29.80 Aligned_cols=66 Identities=18% Similarity=0.364 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCCceEEEEE--EeCCccccccccccCCCchhHHHHHHHHHHhccCC-eEEEEEecccCCCccccccC
Q 042752 205 PIIEMATTIVEKSGGQYHVLLI--IADGQVTRSVDTQHGQLSSQEQKTIDAIVQASEFP-LSIILVGVGDGPWDMMKEFD 281 (415)
Q Consensus 205 PVI~~ai~iv~~s~~~Y~VLLI--ITDG~ItD~~d~~~~~~~~d~~eTidaIV~AS~lP-LSIIiVGVGd~~F~~Me~LD 281 (415)
-.|+.+++.+++......|.++ ..-|.-. ..+.++||..+...+ .=+||||=|.|..+++--||
T Consensus 141 aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a-------------~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn 207 (432)
T TIGR00237 141 AALADILHILKRRDPSLKVVIYPTLVQGEGA-------------VQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFN 207 (432)
T ss_pred HHHHHHHHHHHhhCCCceEEEecccccCccH-------------HHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcC
Confidence 4667777776654322333332 3334322 578888888777654 78899999999999999998
Q ss_pred CC
Q 042752 282 DN 283 (415)
Q Consensus 282 d~ 283 (415)
+.
T Consensus 208 ~e 209 (432)
T TIGR00237 208 DE 209 (432)
T ss_pred cH
Confidence 74
Done!