Query 042752
Match_columns 415
No_of_seqs 188 out of 540
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 15:50:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042752.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042752hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hqf_A Thrombospondin-related 98.5 2.7E-06 9.1E-11 80.2 14.4 151 97-282 21-179 (281)
2 4hqo_A Sporozoite surface prot 98.4 7.8E-07 2.7E-11 83.7 9.4 149 98-281 19-175 (266)
3 3n2n_F Anthrax toxin receptor 98.3 6.6E-06 2.3E-10 71.3 12.7 148 97-282 7-158 (185)
4 3ibs_A Conserved hypothetical 98.3 3.3E-06 1.1E-10 75.3 9.3 140 97-272 11-150 (218)
5 1shu_X Anthrax toxin receptor 98.2 6.1E-06 2.1E-10 71.3 10.0 147 98-282 7-155 (182)
6 2xgg_A Microneme protein 2; A/ 98.1 1.7E-05 5.9E-10 69.5 11.0 137 97-272 17-162 (178)
7 1q0p_A Complement factor B; VO 98.1 4.8E-06 1.6E-10 74.1 6.7 157 97-282 15-191 (223)
8 4fx5_A VON willebrand factor t 98.1 8.3E-06 2.8E-10 83.8 8.9 154 96-281 76-230 (464)
9 1atz_A VON willebrand factor; 98.1 1.6E-05 5.4E-10 70.0 9.4 142 97-280 5-155 (189)
10 1ijb_A VON willebrand factor; 98.0 2E-05 6.7E-10 70.7 9.0 144 98-280 14-166 (202)
11 1n3y_A Integrin alpha-X; alpha 98.0 5.9E-06 2E-10 72.6 5.4 143 98-281 10-165 (198)
12 2b2x_A Integrin alpha-1; compu 97.9 7.3E-05 2.5E-09 67.7 12.0 133 97-272 22-164 (223)
13 1pt6_A Integrin alpha-1; cell 97.9 9E-05 3.1E-09 66.4 11.9 132 98-272 8-149 (213)
14 2odp_A Complement C2; C3/C5 co 97.9 2.3E-05 7.8E-10 79.1 8.2 155 97-283 9-186 (509)
15 2x31_A Magnesium-chelatase 60 97.8 2.3E-06 8E-11 74.9 0.3 153 98-281 6-161 (189)
16 2x5n_A SPRPN10, 26S proteasome 97.8 0.00015 5.3E-09 66.0 11.8 162 99-299 4-172 (192)
17 1v7p_C Integrin alpha-2; snake 97.8 0.00024 8.3E-09 63.0 11.8 131 98-271 7-147 (200)
18 1rrk_A Complement factor B; BB 97.7 8.4E-05 2.9E-09 74.5 9.2 153 98-282 2-177 (497)
19 1mf7_A Integrin alpha M; cell 97.7 6.3E-06 2.1E-10 72.7 0.6 133 98-272 6-147 (194)
20 4b4t_W RPN10, 26S proteasome r 97.7 0.00011 3.7E-09 71.2 9.1 162 99-297 5-174 (268)
21 3hrz_D Complement factor B; se 97.6 0.00016 5.5E-09 76.1 10.1 154 97-282 243-419 (741)
22 3zqk_A VON willebrand factor; 97.3 0.00017 5.8E-09 64.4 4.2 137 98-282 22-169 (199)
23 3k6s_A Integrin alpha-X; cell 97.1 0.00076 2.6E-08 76.1 7.7 142 98-282 131-287 (1095)
24 1mjn_A Integrin alpha-L; rossm 97.0 0.0018 6.1E-08 56.8 7.6 137 98-280 3-150 (179)
25 1jey_A KU70; double-strand DNA 96.9 0.0076 2.6E-07 63.8 12.9 156 99-275 37-212 (609)
26 1jey_B KU80; double-strand DNA 96.4 0.013 4.4E-07 61.3 10.4 150 93-272 4-170 (565)
27 1yvr_A RO autoantigen, 60-kDa 96.2 0.033 1.1E-06 57.7 12.2 139 98-275 369-507 (538)
28 2nvo_A RO sixty-related protei 95.2 0.13 4.6E-06 53.4 12.0 139 98-273 363-501 (535)
29 2iue_A Pactolus I-domain; memb 86.5 1.8 6.2E-05 40.4 7.7 109 98-235 4-119 (212)
30 2ww8_A RRGA, cell WALL surface 85.2 3.4 0.00011 46.0 10.3 122 98-234 225-392 (893)
31 3rag_A Uncharacterized protein 59.4 6.2 0.00021 37.7 3.5 42 220-273 9-50 (242)
32 3fcs_B Integrin beta-3; beta p 55.7 13 0.00046 40.1 5.7 49 185-233 200-255 (690)
33 3rag_A Uncharacterized protein 50.2 20 0.00069 34.2 5.4 92 98-216 135-227 (242)
34 3otr_A Enolase; structural gen 35.1 60 0.0021 33.6 6.5 144 80-266 228-381 (452)
35 3m0m_A L-rhamnose isomerase; b 31.9 60 0.0021 33.2 5.9 112 151-272 52-183 (438)
36 3qtp_A Enolase 1; glycolysis, 25.8 1.3E+02 0.0046 30.9 7.1 65 80-148 224-296 (441)
37 1zo0_A ODC-AZ, ornithine decar 25.1 10 0.00034 33.1 -1.1 35 363-405 90-124 (126)
38 3k6s_B Integrin beta-2; cell r 20.8 88 0.003 33.9 4.9 18 94-112 102-119 (687)
No 1
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.45 E-value=2.7e-06 Score=80.22 Aligned_cols=151 Identities=14% Similarity=0.190 Sum_probs=102.5
Q ss_pred eeceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHH-HHHHHHHhhcccccCC---CCccceEeeCCCCCCCCCccccC
Q 042752 97 SSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPY-EQAISIIGKTLSAFDE---DNLIPCFGFGDASTHDQDVFSFY 172 (415)
Q Consensus 97 s~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~Y-qqAI~~Ig~iL~~YD~---Dk~iP~fGFGa~~t~d~~vFsf~ 172 (415)
.+++++.||-|+|++. ..+ +++...+..++..++. +-.+-++.|+.... .+|.|.
T Consensus 21 ~~div~vlD~SgSM~~------------------~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~---~~~~l~ 79 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRR------------------HNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAR---EIIRLH 79 (281)
T ss_dssp CEEEEEEEECCCCSST------------------HHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEE---EEEEEC
T ss_pred ceeEEEEEeCCCCcCH------------------HHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCce---EEEEcc
Confidence 4899999999999952 133 5566666666666664 66799999987642 245554
Q ss_pred CCCCCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCC---ceEEEEEEeCCccccccccccCCCchhHHH
Q 042752 173 PDDICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGG---QYHVLLIIADGQVTRSVDTQHGQLSSQEQK 249 (415)
Q Consensus 173 ~~~p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~~---~Y~VLLIITDG~ItD~~d~~~~~~~~d~~e 249 (415)
.... ...+.++++-..+.......|-|+...-|+.|.+.....+. .-.++|+||||.-+| ...
T Consensus 80 ~~~~--~~~~~l~~~i~~l~~~~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d------------~~~ 145 (281)
T 4hqf_A 80 SDAS--KNKEKALIIIKSLLSTNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDS------------IQD 145 (281)
T ss_dssp SSCS--SCHHHHHHHHHHHHHTTGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSC------------HHH
T ss_pred ccCc--cCHHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCC------------cHH
Confidence 3321 13455555444332234468999999999999887665422 468899999998775 345
Q ss_pred HHHHHHHhccCCeEEEEEecccC-CCccccccCC
Q 042752 250 TIDAIVQASEFPLSIILVGVGDG-PWDMMKEFDD 282 (415)
Q Consensus 250 TidaIV~AS~lPLSIIiVGVGd~-~F~~Me~LDd 282 (415)
..+++..+...-+-|..||||+. +-+.|+.+-+
T Consensus 146 ~~~~~~~l~~~gv~i~~igiG~~~~~~~L~~iA~ 179 (281)
T 4hqf_A 146 SLKESRKLSDRGVKIAVFGIGQGINVAFNRFLVG 179 (281)
T ss_dssp HHHHHHHHHHTTCEEEEEEESSSCCHHHHHHHTT
T ss_pred HHHHHHHHHHCCCEEEEEeCCCccCHHHHHhhhC
Confidence 66666666677899999999985 5555666643
No 2
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.40 E-value=7.8e-07 Score=83.69 Aligned_cols=149 Identities=11% Similarity=0.242 Sum_probs=101.3
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHH-HHHHHHHhhcccccC---CCCccceEeeCCCCCCCCCccccCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPY-EQAISIIGKTLSAFD---EDNLIPCFGFGDASTHDQDVFSFYP 173 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~Y-qqAI~~Ig~iL~~YD---~Dk~iP~fGFGa~~t~d~~vFsf~~ 173 (415)
+++++.||-|+|++. ..+ +++...+-.++..|+ ++-.+-++.|+.... .+|.|..
T Consensus 19 ~DivfvlD~SgSM~~------------------~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~---~~~~l~~ 77 (266)
T 4hqo_A 19 VDLYLLVDGSGSIGY------------------PNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTT---ELIRLGS 77 (266)
T ss_dssp EEEEEEEECSTTTCH------------------HHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEE---EEECTTS
T ss_pred eeEEEEEECCCCcCh------------------hHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcc---eEEecCC
Confidence 799999999999952 234 356666666777776 567889999987642 2444432
Q ss_pred CCCCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc---CCceEEEEEEeCCccccccccccCCCchhHHHH
Q 042752 174 DDICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKS---GGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKT 250 (415)
Q Consensus 174 ~~p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s---~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eT 250 (415)
.. -...+.++++-..+-......|-|+...-|+.|.+..... .+.-.++|+||||..+| ....
T Consensus 78 ~~--~~~~~~~~~~i~~l~~~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d------------~~~~ 143 (266)
T 4hqo_A 78 GQ--SIDKRQALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNS------------KYRA 143 (266)
T ss_dssp HH--HHCHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSC------------HHHH
T ss_pred CC--ccCHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCC------------chHH
Confidence 11 0123455554444322235679999999999998877654 23458999999998875 3566
Q ss_pred HHHHHHhccCCeEEEEEecccCC-CccccccC
Q 042752 251 IDAIVQASEFPLSIILVGVGDGP-WDMMKEFD 281 (415)
Q Consensus 251 idaIV~AS~lPLSIIiVGVGd~~-F~~Me~LD 281 (415)
.+++..+.+..+.|..||||+.. -+.|+++-
T Consensus 144 ~~~a~~l~~~gi~i~~iGiG~~~~~~~L~~iA 175 (266)
T 4hqo_A 144 LEVANKLKQRNVRLAVIGIGQGINHQFNRLIA 175 (266)
T ss_dssp HHHHHHHHHTTCEEEEEECSSSCCHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEecCcccCHHHHHHhh
Confidence 77777777788999999999853 33335543
No 3
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.32 E-value=6.6e-06 Score=71.29 Aligned_cols=148 Identities=14% Similarity=0.114 Sum_probs=93.7
Q ss_pred eeceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCC
Q 042752 97 SSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDI 176 (415)
Q Consensus 97 s~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p 176 (415)
.+++++.||-|+|+... + ....++++.+..-+ ..++-.+-++.|+..... ++.+..
T Consensus 7 ~~div~vlD~SgSM~~~-----------~-----~~~~~~~~~~~~~~--~~~~~~v~lv~f~~~~~~---~~~l~~--- 62 (185)
T 3n2n_F 7 GFDLYFILDKSGSVLHH-----------W-----NEIYYFVEQLAHKF--ISPQLRMSFIVFSTRGTT---LMKLTE--- 62 (185)
T ss_dssp EEEEEEEEECSGGGGGG-----------H-----HHHHHHHHHHHHHC--CCTTEEEEEEEESSSEEE---EEEEEC---
T ss_pred CeeEEEEEeCCCChhhh-----------H-----HHHHHHHHHHHHHh--CCCCcEEEEEEEecCceE---EeccCC---
Confidence 36899999999999520 0 11233333333333 234568899999876422 445532
Q ss_pred CcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHH--hcC--CceEEEEEEeCCccccccccccCCCchhHHHHHH
Q 042752 177 CCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVE--KSG--GQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTID 252 (415)
Q Consensus 177 ~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~--~s~--~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTid 252 (415)
..+.+.++-.+.- .+..+|.|+...-|+.+.+... ..+ ..-.++++||||..++. ......+
T Consensus 63 ---~~~~~~~~i~~l~-~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~----------~~~~~~~ 128 (185)
T 3n2n_F 63 ---DREQIRQGLEELQ-KVLPGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHED----------LFFYSER 128 (185)
T ss_dssp ---CHHHHHHHHHHHH-TCCCCSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHH----------HHHHHHH
T ss_pred ---CHHHHHHHHHHHh-hhcCCCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCC----------cccchHH
Confidence 3344443333322 2345799999999999998652 222 24578999999998751 1123456
Q ss_pred HHHHhccCCeEEEEEecccCCCccccccCC
Q 042752 253 AIVQASEFPLSIILVGVGDGPWDMMKEFDD 282 (415)
Q Consensus 253 aIV~AS~lPLSIIiVGVGd~~F~~Me~LDd 282 (415)
++..+.+..+-|..||||+.+...|+++=+
T Consensus 129 ~~~~~~~~gi~i~~igvg~~~~~~L~~iA~ 158 (185)
T 3n2n_F 129 EANRSRDLGAIVYAVGVKDFNETQLARIAD 158 (185)
T ss_dssp HHHHHHHTTEEEEEEECSSCCHHHHTTTSS
T ss_pred HHHHHHHCCCEEEEEEeccCCHHHHHHHhC
Confidence 666677788999999999877777776644
No 4
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.25 E-value=3.3e-06 Score=75.26 Aligned_cols=140 Identities=19% Similarity=0.276 Sum_probs=96.9
Q ss_pred eeceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCC
Q 042752 97 SSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDI 176 (415)
Q Consensus 97 s~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p 176 (415)
..++++.||.|+|+...+ ..++..+.|...+..++..+. +..+-++.|+.... .++.+..
T Consensus 11 ~~~iv~vlD~SgSM~~~d-------------~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~---~~~~~~~--- 70 (218)
T 3ibs_A 11 GVEVIIALDISNSMLAQD-------------VQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAF---TQLPITS--- 70 (218)
T ss_dssp CCEEEEEEECSGGGGCCS-------------SSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEE---EEEEEES---
T ss_pred CCcEEEEEECCcCccccc-------------CCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCce---EeCCCCC---
Confidence 368999999999996421 125778888888888888876 55899999987632 2334422
Q ss_pred CcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccccccccCCCchhHHHHHHHHHH
Q 042752 177 CCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQ 256 (415)
Q Consensus 177 ~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~ 256 (415)
..+.+.+.-...-+.....|.|+...-|+.|.+........-.++++||||.-++. ...+++..
T Consensus 71 ---~~~~~~~~l~~l~~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~-------------~~~~~~~~ 134 (218)
T 3ibs_A 71 ---DYISAKMFLESISPSLISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG-------------GAVEAAKA 134 (218)
T ss_dssp ---CHHHHHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCS-------------CHHHHHHH
T ss_pred ---CHHHHHHHHHhcCcccCCCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCC-------------cHHHHHHH
Confidence 33444333333333444578999999999998776554344578899999987641 23445555
Q ss_pred hccCCeEEEEEecccC
Q 042752 257 ASEFPLSIILVGVGDG 272 (415)
Q Consensus 257 AS~lPLSIIiVGVGd~ 272 (415)
+.+..+.|..||||+.
T Consensus 135 ~~~~~i~v~~igig~~ 150 (218)
T 3ibs_A 135 AAEKGIQVSVLGVGMP 150 (218)
T ss_dssp HHTTTEEEEEEEESCT
T ss_pred HHhcCCEEEEEEecCC
Confidence 6677899999999974
No 5
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.22 E-value=6.1e-06 Score=71.33 Aligned_cols=147 Identities=13% Similarity=0.142 Sum_probs=94.6
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDIC 177 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~ 177 (415)
.++++.||.|+|+... . ....+.|.+.+..++. .+-.+-++.|+..... ++.+.
T Consensus 7 ~dvv~vlD~SgSM~~~-----------~----~~~~~~~~~~~~~~~~---~~~~v~lv~f~~~~~~---~~~~~----- 60 (182)
T 1shu_X 7 FDLYFVLDKSGSVANN-----------W----IEIYNFVQQLAERFVS---PEMRLSFIVFSSQATI---ILPLT----- 60 (182)
T ss_dssp EEEEEEEECSGGGGGG-----------H----HHHHHHHHHHHHHCCC---TTEEEEEEEESSSEEE---EEEEE-----
T ss_pred eeEEEEEECCCCcccC-----------H----HHHHHHHHHHHHHhcC---CCceEEEEEeCCCceE---EECCC-----
Confidence 6899999999999520 0 1122333333444443 5678999999875321 33443
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc--CCceEEEEEEeCCccccccccccCCCchhHHHHHHHHH
Q 042752 178 CNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKS--GGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIV 255 (415)
Q Consensus 178 c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s--~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV 255 (415)
.+.+.+.++-.. +..+...|.|+....|+.|.+..... ...-.++++||||.-++. ......+++.
T Consensus 61 -~~~~~~~~~l~~-l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~----------~~~~~~~~~~ 128 (182)
T 1shu_X 61 -GDRGKISKGLED-LKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGL----------VPSYAEKEAK 128 (182)
T ss_dssp -CCHHHHHHHHHH-HHTCCCCSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTT----------HHHHHHHHHH
T ss_pred -CCHHHHHHHHHh-cccCCCCCCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCC----------CchhHHHHHH
Confidence 123333332222 22345679999999999999987654 234578899999987641 1233455666
Q ss_pred HhccCCeEEEEEecccCCCccccccCC
Q 042752 256 QASEFPLSIILVGVGDGPWDMMKEFDD 282 (415)
Q Consensus 256 ~AS~lPLSIIiVGVGd~~F~~Me~LDd 282 (415)
.+.+..+.|..||||+.+...|+++-+
T Consensus 129 ~~~~~~i~i~~igvg~~~~~~L~~ia~ 155 (182)
T 1shu_X 129 ISRSLGASVYCVGVLDFEQAQLERIAD 155 (182)
T ss_dssp HHHHTTCEEEEEECSSCCHHHHHHHSS
T ss_pred HHHhCCCEEEEEeCCcCCHHHHHHHhC
Confidence 667788999999999877777777644
No 6
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=98.12 E-value=1.7e-05 Score=69.52 Aligned_cols=137 Identities=10% Similarity=0.087 Sum_probs=90.8
Q ss_pred eeceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceEeeCCCCCCCCCccccCC
Q 042752 97 SSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDE---DNLIPCFGFGDASTHDQDVFSFYP 173 (415)
Q Consensus 97 s~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~---Dk~iP~fGFGa~~t~d~~vFsf~~ 173 (415)
..++++.||-|+|++. ..++++...+..++..|+. .-.+-++.|+.... .+|.|+.
T Consensus 17 ~~divfvlD~SgSm~~------------------~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~---~~~~l~~ 75 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGI------------------QNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVH---LQWDLQS 75 (178)
T ss_dssp CEEEEEEEECCTTTCH------------------HHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEE---EEECTTS
T ss_pred CeeEEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceE---EEEeCCC
Confidence 3799999999999952 2467777777777777763 36899999997642 2344432
Q ss_pred CCCCcCCHHHHHHHHHhhCCcee-ecCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCccccccccccCCCchhH
Q 042752 174 DDICCNGFEEVLTQYREIVPSLR-LAGPTSFAPIIEMATTIVEKS-----GGQYHVLLIIADGQVTRSVDTQHGQLSSQE 247 (415)
Q Consensus 174 ~~p~c~G~egVL~aYr~~l~~v~-LsGPT~FAPVI~~ai~iv~~s-----~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~ 247 (415)
.. ....+.++++-.. +. ..|.|+...-|+.|.+..... ...-.++|+||||.-++ .
T Consensus 76 ~~--~~~~~~~~~~i~~----l~~~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~------------~ 137 (178)
T 2xgg_A 76 PN--AVDKQLAAHAVLD----MPYKKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDS------------D 137 (178)
T ss_dssp GG--GSCHHHHHHHHHH----CCCCCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCH------------H
T ss_pred CC--ccCHHHHHHHHHh----CCCCCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCC------------C
Confidence 11 1144555444332 33 578999999999999875321 12347889999998775 1
Q ss_pred HHHHHHHHHhccCCeEEEEEecccC
Q 042752 248 QKTIDAIVQASEFPLSIILVGVGDG 272 (415)
Q Consensus 248 ~eTidaIV~AS~lPLSIIiVGVGd~ 272 (415)
....+++..+.+..+-|..||||+.
T Consensus 138 ~~~~~~~~~l~~~gi~v~~igvG~~ 162 (178)
T 2xgg_A 138 FRTVRAAKEIRELGGIVTVLAVGHY 162 (178)
T ss_dssp HHHSHHHHHHHHTTCEEEEEECC--
T ss_pred ccHHHHHHHHHHCCCEEEEEEcCCc
Confidence 2344445555566889999999974
No 7
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.08 E-value=4.8e-06 Score=74.09 Aligned_cols=157 Identities=14% Similarity=0.121 Sum_probs=96.6
Q ss_pred eeceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCC
Q 042752 97 SSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDI 176 (415)
Q Consensus 97 s~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p 176 (415)
.+++++.||.|+|+... . .....+++..+..-+..++.+-.+-++.|+..... ++.+. .+
T Consensus 15 ~~div~vlD~SgSM~~~--------~-------~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~---~~~~~--~~ 74 (223)
T 1q0p_A 15 SMNIYLVLDGSDSIGAS--------N-------FTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKI---WVKVS--EA 74 (223)
T ss_dssp CEEEEEEEECSTTTCHH--------H-------HHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEE---EECTT--SG
T ss_pred ceeEEEEEeCCCCCchH--------H-------HHHHHHHHHHHHHHHhcCCCCceEEEEEecCccce---eeccc--cC
Confidence 47999999999999631 0 12234444444444555666678999999876421 23332 22
Q ss_pred CcCCHHHHHHHHHhhCCce-eecCCCChHHHHHHHHHHHHhcC--------CceEEEEEEeCCccccccccccCCCchhH
Q 042752 177 CCNGFEEVLTQYREIVPSL-RLAGPTSFAPIIEMATTIVEKSG--------GQYHVLLIIADGQVTRSVDTQHGQLSSQE 247 (415)
Q Consensus 177 ~c~G~egVL~aYr~~l~~v-~LsGPT~FAPVI~~ai~iv~~s~--------~~Y~VLLIITDG~ItD~~d~~~~~~~~d~ 247 (415)
.....+.+.++-..+-+.. ...|.|+...-|+.|.+...... ..-.++++||||.-+... +.
T Consensus 75 ~~~~~~~~~~~i~~l~~~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~---------~~ 145 (223)
T 1q0p_A 75 DSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG---------DP 145 (223)
T ss_dssp GGGCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSS---------CT
T ss_pred CCCCHHHHHHHHHhcccccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCC---------Ch
Confidence 2234455555443332221 24799999999999998875331 245788999999876311 12
Q ss_pred HHHHHHHHH----------hccCCeEEEEEeccc-CCCccccccCC
Q 042752 248 QKTIDAIVQ----------ASEFPLSIILVGVGD-GPWDMMKEFDD 282 (415)
Q Consensus 248 ~eTidaIV~----------AS~lPLSIIiVGVGd-~~F~~Me~LDd 282 (415)
....+.+.+ +.+..+-|..||||+ .+...|+++=.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~~~~~~~L~~iA~ 191 (223)
T 1q0p_A 146 ITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 191 (223)
T ss_dssp HHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSCCCHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhhhhhcccCCcEEEEEEecCcCCHHHHHHHhc
Confidence 344444443 234578899999996 45556666643
No 8
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=98.06 E-value=8.3e-06 Score=83.77 Aligned_cols=154 Identities=12% Similarity=0.143 Sum_probs=103.4
Q ss_pred ceeceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCC
Q 042752 96 ESSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDD 175 (415)
Q Consensus 96 es~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~ 175 (415)
..+++++.||.|+||.+. .+..+.|...+..++..+.++..|-++.|+..... ++++...
T Consensus 76 ~~~dvv~VLD~SGSM~~~----------------~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~---~~p~t~~- 135 (464)
T 4fx5_A 76 SENVEVIIIDCSGSMDYP----------------RTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARV---VYPTGGQ- 135 (464)
T ss_dssp CCEEEEEEEECCGGGGTT----------------THHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEE---EESSSSS-
T ss_pred CCceEEEEEEcCcccCCC----------------CchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEE---EecCCcc-
Confidence 358999999999999531 35567788888888888877788999999876421 3333110
Q ss_pred CCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccccccccCCCchhHHHHHHHHH
Q 042752 176 ICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIV 255 (415)
Q Consensus 176 p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV 255 (415)
...--..-.+.-++.+..++..|-|++..-|+.+.+......+.-.++++||||+.++. ....+....
T Consensus 136 -l~~~~~~~~~~l~~~I~~L~~~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~-----------~~~~l~~~~ 203 (464)
T 4fx5_A 136 -LLRADYQSRAAAKEAVGRLHANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESE-----------TPADLARAI 203 (464)
T ss_dssp -CEECSHHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTS-----------CHHHHHHHH
T ss_pred -cccCCHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCC-----------ChHHHHHHH
Confidence 00000111222333445566789999999999999988766555678899999987641 123344445
Q ss_pred HhccCCeEEEEEecccC-CCccccccC
Q 042752 256 QASEFPLSIILVGVGDG-PWDMMKEFD 281 (415)
Q Consensus 256 ~AS~lPLSIIiVGVGd~-~F~~Me~LD 281 (415)
++....+.|..||||.. +.+.|+++-
T Consensus 204 ~a~~~~i~i~tiGiG~~~d~~~L~~IA 230 (464)
T 4fx5_A 204 QSSIGNFTADCRGIGEDWEPKELRKIA 230 (464)
T ss_dssp HHHTTTCEEEEEEESSSSCHHHHHHHH
T ss_pred HHhcCCCeEEEEEeCCccCHHHHHHHH
Confidence 56677899999999953 555666554
No 9
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.05 E-value=1.6e-05 Score=69.95 Aligned_cols=142 Identities=13% Similarity=0.187 Sum_probs=93.4
Q ss_pred eeceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCCccccCC
Q 042752 97 SSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFD---EDNLIPCFGFGDASTHDQDVFSFYP 173 (415)
Q Consensus 97 s~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD---~Dk~iP~fGFGa~~t~d~~vFsf~~ 173 (415)
.+++++.||-|+|++. +.++++...+..++..++ ++-.+-++.|+.... .+|.|+.
T Consensus 5 ~~div~vlD~SgSm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~---~~~~l~~ 63 (189)
T 1atz_A 5 PLDVILLLDGSSSFPA------------------SYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITT---IDVPWNV 63 (189)
T ss_dssp CEEEEEEEECSSSSCH------------------HHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEE---EEECTTC
T ss_pred ceeEEEEEeCCCCCCh------------------hhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcce---EEEecCC
Confidence 3689999999999952 356777777777777775 235799999987542 2344432
Q ss_pred CCCCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCccccccccccCCCchhHH
Q 042752 174 DDICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKS-----GGQYHVLLIIADGQVTRSVDTQHGQLSSQEQ 248 (415)
Q Consensus 174 ~~p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s-----~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~ 248 (415)
....+.+.++-..+ +. ..|.|+...-|+.|.+..... .+.-.++||||||.-+|. ..
T Consensus 64 ----~~~~~~~~~~i~~l-~~--~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~-----------~~ 125 (189)
T 1atz_A 64 ----VPEKAHLLSLVDVM-QR--EGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDS-----------VD 125 (189)
T ss_dssp ----CCCHHHHHHHHHTC-CC--CCCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSC-----------CH
T ss_pred ----CCCHHHHHHHHHhC-cC--CCCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCch-----------HH
Confidence 12445555544432 21 368899999999999877542 234577889999976651 23
Q ss_pred HHHHHHHHhccCCeEEEEEeccc-CCCcccccc
Q 042752 249 KTIDAIVQASEFPLSIILVGVGD-GPWDMMKEF 280 (415)
Q Consensus 249 eTidaIV~AS~lPLSIIiVGVGd-~~F~~Me~L 280 (415)
+..+.+ .+..+-|..||||+ .+-..|+.+
T Consensus 126 ~~~~~~---~~~gi~v~~igvG~~~~~~~L~~i 155 (189)
T 1atz_A 126 AAADAA---RSNRVTVFPIGIGDRYDAAQLRIL 155 (189)
T ss_dssp HHHHHH---HHTTEEEEEEEESSSSCHHHHHHH
T ss_pred HHHHHH---HHCCCEEEEEEcCCcCCHHHHHHH
Confidence 444444 45688999999997 344455554
No 10
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.00 E-value=2e-05 Score=70.66 Aligned_cols=144 Identities=10% Similarity=0.117 Sum_probs=93.4
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCCccccCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFD---EDNLIPCFGFGDASTHDQDVFSFYPD 174 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD---~Dk~iP~fGFGa~~t~d~~vFsf~~~ 174 (415)
+++++.||-|+|++. +.++++...+..++..|+ ++-.+-+..|+.... .+|.|+..
T Consensus 14 ~divfvlD~SgSm~~------------------~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~---~~~~l~~~ 72 (202)
T 1ijb_A 14 LDLVFLLDGSSRLSE------------------AEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSH---AYIGLKDR 72 (202)
T ss_dssp EEEEEEEECBTTSCH------------------HHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEE---EEECTTCC
T ss_pred ccEEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCce---EEEecCCC
Confidence 799999999999852 346777777777888877 455899999987642 23455321
Q ss_pred CCCcCCHHHHHHHHHhhCCcee-ecC-CCChHHHHHHHHHHH-Hhc--CCceEEEEEEeCCccccccccccCCCchhHHH
Q 042752 175 DICCNGFEEVLTQYREIVPSLR-LAG-PTSFAPIIEMATTIV-EKS--GGQYHVLLIIADGQVTRSVDTQHGQLSSQEQK 249 (415)
Q Consensus 175 ~p~c~G~egVL~aYr~~l~~v~-LsG-PT~FAPVI~~ai~iv-~~s--~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~e 249 (415)
...+.+.++-. .++ .+| .|+...-|+.|.+.. .+. .+.-.++|+||||.-++. ..+.
T Consensus 73 ----~~~~~~~~~i~----~l~~~gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~----------~~~~ 134 (202)
T 1ijb_A 73 ----KRPSELRRIAS----QVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQR----------MSRN 134 (202)
T ss_dssp ----CCHHHHHHHHH----TCCCCCBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGG----------GCTT
T ss_pred ----CCHHHHHHHHH----hCcCCCCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCcc----------chHH
Confidence 23444544432 233 345 499999999887543 221 234589999999987641 0123
Q ss_pred HHHHHHHhccCCeEEEEEeccc-CCCcccccc
Q 042752 250 TIDAIVQASEFPLSIILVGVGD-GPWDMMKEF 280 (415)
Q Consensus 250 TidaIV~AS~lPLSIIiVGVGd-~~F~~Me~L 280 (415)
..+++..+-+..+-|..||||+ .+.+.|+.+
T Consensus 135 ~~~~a~~l~~~gi~i~~igvG~~~~~~~L~~i 166 (202)
T 1ijb_A 135 FVRYVQGLKKKKVIVIPVGIGPHANLKQIRLI 166 (202)
T ss_dssp HHHHHHHHHHTTEEEEEEEESTTSCHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEecCCcCCHHHHHHH
Confidence 3444444555789999999996 455566655
No 11
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=97.99 E-value=5.9e-06 Score=72.57 Aligned_cols=143 Identities=19% Similarity=0.263 Sum_probs=91.1
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccccc-CCCCccceEeeCCCCCCCCCccccCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAF-DEDNLIPCFGFGDASTHDQDVFSFYPDDI 176 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~Y-D~Dk~iP~fGFGa~~t~d~~vFsf~~~~p 176 (415)
.++++.||-|+|+.. ..++.+...+-.++..+ ..+-.+-++.|+.... .++.+...
T Consensus 10 ~div~vlD~SgSM~~------------------~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~---~~~~~~~~-- 66 (198)
T 1n3y_A 10 QDIVFLIDGSGSISS------------------RNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQ---THFTFEEF-- 66 (198)
T ss_dssp EEEEEEEECCTTSCH------------------HHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEE---EEECHHHH--
T ss_pred eeEEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCcc---EEEecCcc--
Confidence 689999999999952 13456666677777777 5778899999988632 12333110
Q ss_pred CcCCHHHHHHHHHhhCCcee-ecCCCChHHHHHHHHHH-HHhc----CCceEEEEEEeCCccc-cccccccCCCchhHHH
Q 042752 177 CCNGFEEVLTQYREIVPSLR-LAGPTSFAPIIEMATTI-VEKS----GGQYHVLLIIADGQVT-RSVDTQHGQLSSQEQK 249 (415)
Q Consensus 177 ~c~G~egVL~aYr~~l~~v~-LsGPT~FAPVI~~ai~i-v~~s----~~~Y~VLLIITDG~It-D~~d~~~~~~~~d~~e 249 (415)
.. .+...+.+..+. ..|.|+....|+.|.+. .... .+.-.++++||||.-+ +.. .
T Consensus 67 -----~~-~~~~~~~i~~l~~~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~------------~ 128 (198)
T 1n3y_A 67 -----RR-SSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSL------------D 128 (198)
T ss_dssp -----HH-CSSGGGGGTTCCCCCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSS------------C
T ss_pred -----CC-HHHHHHHHhcCcCCCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcc------------c
Confidence 00 011223334443 67999999999999844 3321 2345788999999876 311 1
Q ss_pred HHHHHHHhccCCeEEEEEecccCC-----CccccccC
Q 042752 250 TIDAIVQASEFPLSIILVGVGDGP-----WDMMKEFD 281 (415)
Q Consensus 250 TidaIV~AS~lPLSIIiVGVGd~~-----F~~Me~LD 281 (415)
..+++..+.+..+-|..||||+.. ...|+++=
T Consensus 129 ~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA 165 (198)
T 1n3y_A 129 YKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIA 165 (198)
T ss_dssp HHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHS
T ss_pred HHHHHHHHHHCCCEEEEEEccccccccccHHHHHHHH
Confidence 233444455677889999999863 44455443
No 12
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=97.95 E-value=7.3e-05 Score=67.66 Aligned_cols=133 Identities=19% Similarity=0.285 Sum_probs=89.4
Q ss_pred eeceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCCccccCC
Q 042752 97 SSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFD---EDNLIPCFGFGDASTHDQDVFSFYP 173 (415)
Q Consensus 97 s~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD---~Dk~iP~fGFGa~~t~d~~vFsf~~ 173 (415)
.+++++.||-|+|+. .++++...+..++..++ ++-.+-++.|+.... .+|.+.
T Consensus 22 ~~div~vlD~SgSM~--------------------~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~---~~~~l~- 77 (223)
T 2b2x_A 22 QLDIVIVLDGSNSIY--------------------PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVT---HEFNLN- 77 (223)
T ss_dssp CEEEEEEEECSTTCC--------------------CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEE---EEECTT-
T ss_pred cceEEEEEECCCChh--------------------hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCcc---EEEecC-
Confidence 379999999999983 14667777777777775 677899999987642 234442
Q ss_pred CCCCcCCHHHHHHHHHhhCCcee-ecC-CCChHHHHHHHHHHH-Hh----cCCceEEEEEEeCCccccccccccCCCchh
Q 042752 174 DDICCNGFEEVLTQYREIVPSLR-LAG-PTSFAPIIEMATTIV-EK----SGGQYHVLLIIADGQVTRSVDTQHGQLSSQ 246 (415)
Q Consensus 174 ~~p~c~G~egVL~aYr~~l~~v~-LsG-PT~FAPVI~~ai~iv-~~----s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d 246 (415)
+ ....+.++++- ..+. ..| -|+...-|+.|.+.. .. ..+.-.++|+||||.-++.
T Consensus 78 -~--~~~~~~~~~~i----~~l~~~gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~----------- 139 (223)
T 2b2x_A 78 -K--YSSTEEVLVAA----NKIVQRGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDN----------- 139 (223)
T ss_dssp -T--CCSHHHHHHHH----TTCCCCCCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTG-----------
T ss_pred -C--CCCHHHHHHHH----HhhhccCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC-----------
Confidence 1 12455555543 3343 356 499999999998762 21 1234578899999987762
Q ss_pred HHHHHHHHHHhccCCeEEEEEecccC
Q 042752 247 EQKTIDAIVQASEFPLSIILVGVGDG 272 (415)
Q Consensus 247 ~~eTidaIV~AS~lPLSIIiVGVGd~ 272 (415)
....+++..+.+..+-|..||||+.
T Consensus 140 -~~~~~~~~~~~~~gi~v~~igvG~~ 164 (223)
T 2b2x_A 140 -YRLKQVIQDCEDENIQRFSIAILGH 164 (223)
T ss_dssp -GGHHHHHHHHHTTTEEEEEEEECGG
T ss_pred -ccHHHHHHHHHHCCCEEEEEEecCc
Confidence 1234444555567899999999964
No 13
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=97.91 E-value=9e-05 Score=66.43 Aligned_cols=132 Identities=17% Similarity=0.281 Sum_probs=88.0
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCCccccCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFD---EDNLIPCFGFGDASTHDQDVFSFYPD 174 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD---~Dk~iP~fGFGa~~t~d~~vFsf~~~ 174 (415)
+++++.||-|+|+. .++.+...+-.++..++ ++-.+-++.|+.... .+|++..
T Consensus 8 ~div~vlD~SgSm~--------------------~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~---~~~~l~~- 63 (213)
T 1pt6_A 8 LDIVIVLDGSNSIY--------------------PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVT---HEFNLNK- 63 (213)
T ss_dssp EEEEEEEECCTTCC--------------------CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEE---EEECTTT-
T ss_pred ccEEEEEECCCChh--------------------hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCcc---EEEeccc-
Confidence 68999999999984 14566666666666665 677899999987542 2444421
Q ss_pred CCCcCCHHHHHHHHHhhCCcee-ecC-CCChHHHHHHHHHHH-Hh----cCCceEEEEEEeCCccccccccccCCCchhH
Q 042752 175 DICCNGFEEVLTQYREIVPSLR-LAG-PTSFAPIIEMATTIV-EK----SGGQYHVLLIIADGQVTRSVDTQHGQLSSQE 247 (415)
Q Consensus 175 ~p~c~G~egVL~aYr~~l~~v~-LsG-PT~FAPVI~~ai~iv-~~----s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~ 247 (415)
....+.++++-.. +. ..| -|+...-|+.|.+.. .. ....-.++++||||.-++.
T Consensus 64 ---~~~~~~~~~~i~~----l~~~~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~------------ 124 (213)
T 1pt6_A 64 ---YSSTEEVLVAAKK----IVQRGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDN------------ 124 (213)
T ss_dssp ---CSSHHHHHHHHHT----CCCCCCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCS------------
T ss_pred ---cCCHHHHHHHHHh----ccCCCCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC------------
Confidence 1345566554332 33 356 499999999998753 21 1234688999999987752
Q ss_pred HHHHHHHHHhccCCeEEEEEecccC
Q 042752 248 QKTIDAIVQASEFPLSIILVGVGDG 272 (415)
Q Consensus 248 ~eTidaIV~AS~lPLSIIiVGVGd~ 272 (415)
....+++..+.+..+-|..||||+.
T Consensus 125 ~~~~~~~~~~~~~gi~i~~igig~~ 149 (213)
T 1pt6_A 125 HRLKKVIQDCEDENIQRFSIAILGS 149 (213)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEECHH
T ss_pred ccHHHHHHHHHHCCCEEEEEEeccc
Confidence 2334455555567889999999963
No 14
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=97.88 E-value=2.3e-05 Score=79.14 Aligned_cols=155 Identities=14% Similarity=0.176 Sum_probs=100.1
Q ss_pred eeceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccccc---CCCCccceEeeCCCCCCCCCccccCC
Q 042752 97 SSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAF---DEDNLIPCFGFGDASTHDQDVFSFYP 173 (415)
Q Consensus 97 s~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~Y---D~Dk~iP~fGFGa~~t~d~~vFsf~~ 173 (415)
.+++++.||-|+|++. ..+++|.+.+..++..+ ..+-.+-+..|+..... +|++..
T Consensus 9 ~~divfvlD~SgSM~~------------------~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~---~~~l~~ 67 (509)
T 2odp_A 9 HLNLYLLLDASQSVSE------------------NDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKV---LMSVLN 67 (509)
T ss_dssp EEEEEEEEECSTTSCH------------------HHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEE---EECTTS
T ss_pred CeeEEEEEeCCCccch------------------hhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCce---eEeccC
Confidence 5799999999999952 23466666666666655 67889999999875421 344421
Q ss_pred CCCCcCCHHHHHHHHHhhCCceee-cCCCChHHHHHHHHHHHHhcC-----------CceEEEEEEeCCccccccccccC
Q 042752 174 DDICCNGFEEVLTQYREIVPSLRL-AGPTSFAPIIEMATTIVEKSG-----------GQYHVLLIIADGQVTRSVDTQHG 241 (415)
Q Consensus 174 ~~p~c~G~egVL~aYr~~l~~v~L-sGPT~FAPVI~~ai~iv~~s~-----------~~Y~VLLIITDG~ItD~~d~~~~ 241 (415)
+.-...+.++++-..+-..... .|.|+...-|+.|.+...... ..-.++++||||.-++..
T Consensus 68 --~~~~~~~~~~~~l~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~----- 140 (509)
T 2odp_A 68 --DNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGG----- 140 (509)
T ss_dssp --GGGGCHHHHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSS-----
T ss_pred --CCCCCHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCC-----
Confidence 1122445555443332221111 388999999999988764321 133788999999876521
Q ss_pred CCchhHHHHHHHHHHh------ccCCeEEEEEeccc--CCCccccccCCC
Q 042752 242 QLSSQEQKTIDAIVQA------SEFPLSIILVGVGD--GPWDMMKEFDDN 283 (415)
Q Consensus 242 ~~~~d~~eTidaIV~A------S~lPLSIIiVGVGd--~~F~~Me~LDd~ 283 (415)
+.++..+.+.+. .+..+-|..||||+ .+.+.|+++-..
T Consensus 141 ----~~~~~~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~~ 186 (509)
T 2odp_A 141 ----SPKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSK 186 (509)
T ss_dssp ----CTHHHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSCC
T ss_pred ----ChhHHHHHHHHHhhccccccCceEEEEEEcCCCcccHHHHHhhccC
Confidence 234555555542 26678899999998 577778777553
No 15
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=97.85 E-value=2.3e-06 Score=74.95 Aligned_cols=153 Identities=13% Similarity=0.196 Sum_probs=89.9
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc-cCCCCccceEeeCCCCCCCCCccccCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSA-FDEDNLIPCFGFGDASTHDQDVFSFYPDDI 176 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~-YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p 176 (415)
.++++.||.|+|+.. +..+.|...+..++.. +..+..+-++.|+..... .++.+.
T Consensus 6 ~~vv~vlD~SgSM~~------------------~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~--~~~~~~---- 61 (189)
T 2x31_A 6 RVLIFAVDASGSAAV------------------ARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQ--VLLQPS---- 61 (189)
T ss_dssp CEEEEEEECCTTSCC--------------------CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCC--BCTTTC----
T ss_pred eEEEEEEECCCCCCc------------------hHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCce--EecCCC----
Confidence 589999999999941 1224444444444433 367778999999863221 122221
Q ss_pred CcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCccccccccccCCCchhHHHHHHHH
Q 042752 177 CCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSG--GQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAI 254 (415)
Q Consensus 177 ~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~--~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaI 254 (415)
.+.+.+.+. +..+...|-|++..-|+.+.+...+.. +.-.++++||||..++..+..+.. ..-.++..+++
T Consensus 62 --~~~~~~~~~----i~~l~~~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~-~~~~~~~~~~~ 134 (189)
T 2x31_A 62 --RSLTQTKRQ----LQGLPGGGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANR-ELAGEQATKVA 134 (189)
T ss_dssp --SCHHHHHHH----HHHCCCCBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHH-GGGTCCCEEEE
T ss_pred --CCHHHHHHH----HhcCCCCCCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccc-cchhHHHHHHH
Confidence 244444433 334556799999999999999887542 235788999999876521100000 00000111222
Q ss_pred HHhccCCeEEEEEecccCCCccccccC
Q 042752 255 VQASEFPLSIILVGVGDGPWDMMKEFD 281 (415)
Q Consensus 255 V~AS~lPLSIIiVGVGd~~F~~Me~LD 281 (415)
..+.+..+.|+.||+|+.+...|+++-
T Consensus 135 ~~~~~~gi~v~~ig~g~~~~~~L~~iA 161 (189)
T 2x31_A 135 RAIRASGMPAVIIDTAMRPNPALVDLA 161 (189)
T ss_dssp ECTGGGGSCCTHHHHHHSSCSSSCSTT
T ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHH
Confidence 233345678888999988666666664
No 16
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=97.82 E-value=0.00015 Score=66.00 Aligned_cols=162 Identities=14% Similarity=0.188 Sum_probs=103.7
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccccc---CCCCccceEeeCCCCCCCCCccccCCCC
Q 042752 99 NLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAF---DEDNLIPCFGFGDASTHDQDVFSFYPDD 175 (415)
Q Consensus 99 nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~Y---D~Dk~iP~fGFGa~~t~d~~vFsf~~~~ 175 (415)
.++++||.|.||... +-.+|..+.|...+-.++..| .....+-+..|++...+ -+.++.
T Consensus 4 ~lvlvlD~S~SM~~~-------------D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~--~~~plT--- 65 (192)
T 2x5n_A 4 ATMILIDNSEWMING-------------DYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQ--VLSTLT--- 65 (192)
T ss_dssp EEEEEECCSGGGGCT-------------TSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCC--EEEEEE---
T ss_pred EEEEEEECCHhhccC-------------CCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcE--EecCCC---
Confidence 689999999999632 113688888887777665544 34568889999874222 112332
Q ss_pred CCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC--Cce-EEEEEEeCCccccccccccCCCchhHHHHHH
Q 042752 176 ICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSG--GQY-HVLLIIADGQVTRSVDTQHGQLSSQEQKTID 252 (415)
Q Consensus 176 p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~--~~Y-~VLLIITDG~ItD~~d~~~~~~~~d~~eTid 252 (415)
...+.+++ .+..+...|.|++..-|+.|.+..++.. ... .|+|+++|+. ++ +..+..+
T Consensus 66 ---~d~~~i~~----~L~~l~~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~-~~-----------~~~~~~~ 126 (192)
T 2x5n_A 66 ---RDYGKFLS----AMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPI-VE-----------DEKNLIR 126 (192)
T ss_dssp ---SCHHHHHH----HHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCC-SS-----------CHHHHHH
T ss_pred ---CCHHHHHH----HHHcCCCCCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCC-CC-----------CchhHHH
Confidence 23444443 3445777899999999999998887643 223 3555555544 32 2466777
Q ss_pred HHHHhccCCeEEEEEecccCCCcc-ccccCCCCCCCcccceecccchh
Q 042752 253 AIVQASEFPLSIILVGVGDGPWDM-MKEFDDNIPARAFDNFQFVNFTE 299 (415)
Q Consensus 253 aIV~AS~lPLSIIiVGVGd~~F~~-Me~LDd~~~~R~rDNvQFV~f~d 299 (415)
++..+.+.-+.|.+||+|..+... |++|=+... .-|+-+||...+
T Consensus 127 ~a~~lk~~gi~v~~Ig~G~~~~~~~l~~la~~~n--~~~~s~~~~~~~ 172 (192)
T 2x5n_A 127 LAKRMKKNNVAIDIIHIGELQNESALQHFIDAAN--SSDSCHLVSIPP 172 (192)
T ss_dssp HHHHHHHTTEEEEEEEESCC---CHHHHHHHHHC--STTCCEEEEECC
T ss_pred HHHHHHHCCCEEEEEEeCCCCccHHHHHHHHhcc--CCCceEEEEecC
Confidence 777888889999999999876532 776643211 126777875433
No 17
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=97.75 E-value=0.00024 Score=62.99 Aligned_cols=131 Identities=15% Similarity=0.174 Sum_probs=88.1
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCCccccCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFD---EDNLIPCFGFGDASTHDQDVFSFYPD 174 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD---~Dk~iP~fGFGa~~t~d~~vFsf~~~ 174 (415)
+++++.||-|.|+. + ++++...+..++..++ ++-.+-++.|+.... .+|+|+.
T Consensus 7 ~div~vlD~SgSm~-------------------~-~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~---~~~~l~~- 62 (200)
T 1v7p_C 7 IDVVVVCDESNSIY-------------------P-WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPR---VVFNLNT- 62 (200)
T ss_dssp EEEEEEEECCTTCC-------------------C-HHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEE---EEECTTT-
T ss_pred ccEEEEEECCCCcc-------------------c-HHHHHHHHHHHHHhcCCCCCceEEEEEEECCCce---EEEeCCC-
Confidence 68999999999983 1 4667777777777776 577899999987642 2455541
Q ss_pred CCCcCCHHHHHHHHHhhCCceee-cC-CCChHHHHHHHHHH-HHhc----CCceEEEEEEeCCccccccccccCCCchhH
Q 042752 175 DICCNGFEEVLTQYREIVPSLRL-AG-PTSFAPIIEMATTI-VEKS----GGQYHVLLIIADGQVTRSVDTQHGQLSSQE 247 (415)
Q Consensus 175 ~p~c~G~egVL~aYr~~l~~v~L-sG-PT~FAPVI~~ai~i-v~~s----~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~ 247 (415)
....+.++++-.. +.. .| -|+...-|+.|.+. .... .+.-.++|+||||.-++.
T Consensus 63 ---~~~~~~~~~~i~~----l~~~~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~------------ 123 (200)
T 1v7p_C 63 ---YKTKEEMIVATSQ----TSQYGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDG------------ 123 (200)
T ss_dssp ---CSSHHHHHHHHHH----CCCCCCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCG------------
T ss_pred ---cCCHHHHHHHHHh----hhccCCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCc------------
Confidence 1345666655443 332 45 59999999999885 3221 134578999999987762
Q ss_pred HHHHHHHHHhccCCeEEEEEeccc
Q 042752 248 QKTIDAIVQASEFPLSIILVGVGD 271 (415)
Q Consensus 248 ~eTidaIV~AS~lPLSIIiVGVGd 271 (415)
....+++..+.+..+-|..||||+
T Consensus 124 ~~~~~~~~~~~~~gi~i~~igvg~ 147 (200)
T 1v7p_C 124 SMLKAVIDQCNHDNILRFGIAVLG 147 (200)
T ss_dssp GGHHHHHHHHHHTTEEEEEEEECH
T ss_pred ccHHHHHHHHHHCCCEEEEEEecc
Confidence 112334444556788999999964
No 18
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=97.72 E-value=8.4e-05 Score=74.49 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=98.1
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc---ccCCCCccceEeeCCCCCCCCCccccCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLS---AFDEDNLIPCFGFGDASTHDQDVFSFYPD 174 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~---~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~ 174 (415)
++++++||-|+|++. +.++.|...+..++. .+..+-.+-++.|+.... .++.| .
T Consensus 2 ~div~vlD~SgSM~~------------------~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~---~~~~~--~ 58 (497)
T 1rrk_A 2 MNIYLVLDGSDSIGA------------------SNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKV--S 58 (497)
T ss_dssp EEEEEEEECSTTTCH------------------HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEE---EEECT--T
T ss_pred eeEEEEEECCCCcch------------------hhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCce---Eeecc--c
Confidence 589999999999952 345555555555555 455567899999986532 13333 2
Q ss_pred CCCcCCHHHHHHHHHhhCCce-eecCCCChHHHHHHHHHHHHhc--------CCceEEEEEEeCCccccccccccCCCch
Q 042752 175 DICCNGFEEVLTQYREIVPSL-RLAGPTSFAPIIEMATTIVEKS--------GGQYHVLLIIADGQVTRSVDTQHGQLSS 245 (415)
Q Consensus 175 ~p~c~G~egVL~aYr~~l~~v-~LsGPT~FAPVI~~ai~iv~~s--------~~~Y~VLLIITDG~ItD~~d~~~~~~~~ 245 (415)
.+.....+.++++-..+-+.- ...|.|+...-|+.|.+..... .+.-.++++||||.-++..
T Consensus 59 ~~~~~~~~~~~~~l~~l~~~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~--------- 129 (497)
T 1rrk_A 59 EADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG--------- 129 (497)
T ss_dssp SGGGGCHHHHHHHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSS---------
T ss_pred cccccCHHHHHHHHHhCcCccccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCC---------
Confidence 233345566666554443222 2568899999999999887321 1234788999999876421
Q ss_pred hHHHHHHHHHHhc----------cCCeEEEEEeccc-CCCccccccCC
Q 042752 246 QEQKTIDAIVQAS----------EFPLSIILVGVGD-GPWDMMKEFDD 282 (415)
Q Consensus 246 d~~eTidaIV~AS----------~lPLSIIiVGVGd-~~F~~Me~LDd 282 (415)
+..+..+.+.+.. +..+-|..||||+ .+.+.|++|=.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~igvG~~~~~~~L~~iA~ 177 (497)
T 1rrk_A 130 DPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 177 (497)
T ss_dssp CTHHHHHHHHHHTTCSSCC-CCCGGGEEEEEEECSSSCCHHHHHHHSC
T ss_pred ChhHHHHHHHHHhhhhcccccchhcCeeEEEecCCCccCHHHHHHHhc
Confidence 2355566665542 2278899999997 46666666654
No 19
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=97.70 E-value=6.3e-06 Score=72.66 Aligned_cols=133 Identities=18% Similarity=0.241 Sum_probs=86.1
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC-CCCccceEeeCCCCCCCCCccccCCC-C
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFD-EDNLIPCFGFGDASTHDQDVFSFYPD-D 175 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD-~Dk~iP~fGFGa~~t~d~~vFsf~~~-~ 175 (415)
+++++.||-|+|++. ..++++...+..++..++ ++-.+-++.|+.... .+|.|+.. +
T Consensus 6 ~div~vlD~SgSm~~------------------~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~---~~~~l~~~~~ 64 (194)
T 1mf7_A 6 SDIAFLIDGSGSIIP------------------HDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFR---IHFTFKEFQN 64 (194)
T ss_dssp EEEEEEEECCTTSCH------------------HHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEE---EEECHHHHHH
T ss_pred eeEEEEEeCCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCce---EEEecCCcCC
Confidence 689999999999952 245667777777777776 345799999987642 23444220 1
Q ss_pred CCcCCHHHHHHHHHhhCCcee-ecCCCChHHHHHHHHHHH-Hh-c---CCceEEEEEEeCCccc-cccccccCCCchhHH
Q 042752 176 ICCNGFEEVLTQYREIVPSLR-LAGPTSFAPIIEMATTIV-EK-S---GGQYHVLLIIADGQVT-RSVDTQHGQLSSQEQ 248 (415)
Q Consensus 176 p~c~G~egVL~aYr~~l~~v~-LsGPT~FAPVI~~ai~iv-~~-s---~~~Y~VLLIITDG~It-D~~d~~~~~~~~d~~ 248 (415)
. ..+. +.+..+. ..|.|+...-|+.|.+.. .. . .+.-.++++||||.-+ |..
T Consensus 65 ~--~~~~-------~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~------------ 123 (194)
T 1mf7_A 65 N--PNPR-------SLVKPITQLLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPL------------ 123 (194)
T ss_dssp S--CCHH-------HHHTTCCCCCSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSS------------
T ss_pred H--HHHH-------HHHHhCcCCCCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCch------------
Confidence 0 1222 2233444 489999999999998643 21 1 1235889999999877 421
Q ss_pred HHHHHHHHhccCCeEEEEEecccC
Q 042752 249 KTIDAIVQASEFPLSIILVGVGDG 272 (415)
Q Consensus 249 eTidaIV~AS~lPLSIIiVGVGd~ 272 (415)
...+++.++.+..+.|..||||+.
T Consensus 124 ~~~~~~~~~~~~gi~v~~igvG~~ 147 (194)
T 1mf7_A 124 GYEDVIPEADREGVIRYVIGVGDA 147 (194)
T ss_dssp CGGGTHHHHHHTTEEEEEEEESGG
T ss_pred hhHHHHHHHHHCCCEEEEEEeccc
Confidence 112233444567899999999975
No 20
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00011 Score=71.20 Aligned_cols=162 Identities=11% Similarity=0.186 Sum_probs=108.0
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc---ccCCCCccceEeeCCCCCCCCCcc-ccCCC
Q 042752 99 NLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLS---AFDEDNLIPCFGFGDASTHDQDVF-SFYPD 174 (415)
Q Consensus 99 nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~---~YD~Dk~iP~fGFGa~~t~d~~vF-sf~~~ 174 (415)
.++|+||-|.||... +-.+|.++.+..++-.++. .-+....+-+..|+..... |. ++.
T Consensus 5 AtViviD~S~SM~~~-------------D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~---vl~plT-- 66 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNG-------------DFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR---VLSTFT-- 66 (268)
T ss_dssp EEEEEECCSSTTSST-------------TSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCE---EEEEEE--
T ss_pred eEEEEEECCHHHhCC-------------CCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcce---eccCCc--
Confidence 478999999999531 1136788776666666655 3455678888889664321 21 221
Q ss_pred CCCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc--CCceEEEEEEeCCccccccccccCCCchhHHHHHH
Q 042752 175 DICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKS--GGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTID 252 (415)
Q Consensus 175 ~p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s--~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTid 252 (415)
.....++. .+..++..|-|++..-|+.|...++.. ...-..+||++||.+.+ +.++.++
T Consensus 67 ----~D~~~il~----aL~~l~~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~-----------~~~~l~~ 127 (268)
T 4b4t_W 67 ----AEFGKILA----GLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD-----------SRDELIR 127 (268)
T ss_dssp ----SCHHHHHH----HHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSS-----------CHHHHHH
T ss_pred ----chHHHHHH----HhhhcCcCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCC-----------CHHHHHH
Confidence 23444544 456788899999999999999988653 33456668889998765 3678888
Q ss_pred HHHHhccCCeEEEEEecccCC--CccccccCCCCCCCcccceecccc
Q 042752 253 AIVQASEFPLSIILVGVGDGP--WDMMKEFDDNIPARAFDNFQFVNF 297 (415)
Q Consensus 253 aIV~AS~lPLSIIiVGVGd~~--F~~Me~LDd~~~~R~rDNvQFV~f 297 (415)
++.++.+.-++|=+||+|..+ -+.|+.|=+...+..-|+-+||..
T Consensus 128 lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~v~v 174 (268)
T 4b4t_W 128 LAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTV 174 (268)
T ss_dssp HHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCSSTTTSCEEEEE
T ss_pred HHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcCCCCCceeEEEe
Confidence 888888888888888888654 455777632222222356666654
No 21
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.63 E-value=0.00016 Score=76.08 Aligned_cols=154 Identities=15% Similarity=0.120 Sum_probs=95.3
Q ss_pred eeceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhc---ccccCCCCccceEeeCCCCCCCCCccccCC
Q 042752 97 SSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKT---LSAFDEDNLIPCFGFGDASTHDQDVFSFYP 173 (415)
Q Consensus 97 s~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~i---L~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~ 173 (415)
.+++++.||-|+|++. +.++++.+.+..+ |..++..-+|-++-|+.... .++.|..
T Consensus 243 ~~div~vlD~SgSM~~------------------~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~---~~~~l~~ 301 (741)
T 3hrz_D 243 SMNIYLVLDGSGSIGA------------------SDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKVSE 301 (741)
T ss_dssp EEEEEEEEECSTTTCH------------------HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEE---EEECTTS
T ss_pred ceeEEEEeccCCcccc------------------cchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCc---eeEeecc
Confidence 4789999999999952 2244444444444 44455556799999987542 2344432
Q ss_pred CCCCcCCHHHHHHHHHhhCCce-eecCCCChHHHHHHHHHHHHh--c------CCceEEEEEEeCCccccccccccCCCc
Q 042752 174 DDICCNGFEEVLTQYREIVPSL-RLAGPTSFAPIIEMATTIVEK--S------GGQYHVLLIIADGQVTRSVDTQHGQLS 244 (415)
Q Consensus 174 ~~p~c~G~egVL~aYr~~l~~v-~LsGPT~FAPVI~~ai~iv~~--s------~~~Y~VLLIITDG~ItD~~d~~~~~~~ 244 (415)
. .-...+.++++-.++-... ...|-|+...-|+.|.+.... . ...-.|+|+||||+-+.-.
T Consensus 302 ~--~~~~~~~~~~~i~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~-------- 371 (741)
T 3hrz_D 302 A--DSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG-------- 371 (741)
T ss_dssp G--GGGCHHHHHHHHTTCCGGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSS--------
T ss_pred c--CCcCHHHHHHHHHhcccccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCC--------
Confidence 1 1124455555443322111 168999999999999988721 0 1234789999999765311
Q ss_pred hhHHHHHHHHHH----------hccCCeEEEEEeccc-CCCccccccCC
Q 042752 245 SQEQKTIDAIVQ----------ASEFPLSIILVGVGD-GPWDMMKEFDD 282 (415)
Q Consensus 245 ~d~~eTidaIV~----------AS~lPLSIIiVGVGd-~~F~~Me~LDd 282 (415)
+....++.|.+ +.+.-+.|..||||+ .+.+.|++|-.
T Consensus 372 -~p~~~~~~i~~~~~~~~~a~~~~~~gi~i~~igvG~~~~~~~L~~ia~ 419 (741)
T 3hrz_D 372 -DPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 419 (741)
T ss_dssp -CTHHHHHHHHHHTTCSSCTTCCCGGGEEEEEEECSSSCCHHHHHHHSC
T ss_pred -CchHHHHHHHHHhhcccccccccccCeeEEEEeCCCcCCHHHHHHHhc
Confidence 23455555553 345678999999997 56666666644
No 22
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.28 E-value=0.00017 Score=64.39 Aligned_cols=137 Identities=9% Similarity=0.208 Sum_probs=90.5
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCCccccCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFD---EDNLIPCFGFGDASTHDQDVFSFYPD 174 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD---~Dk~iP~fGFGa~~t~d~~vFsf~~~ 174 (415)
+++++.||-|.|++. +.++++...+-.++..|+ ++-.|-+..|+.... .+|.|+.
T Consensus 22 ~DivfvlD~S~Sm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~---~~~~l~~- 79 (199)
T 3zqk_A 22 LDVAFVLEGSDKIGE------------------ADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVT---VEYPFSE- 79 (199)
T ss_dssp CEEEEEEECCTTTCH------------------HHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEE---EEECTTS-
T ss_pred cCEEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCccc---EEEecCC-
Confidence 689999999999852 345677777777777774 667899999987643 2455542
Q ss_pred CCCcCCHHHHHHHHHhhCCcee-ecCC-CChHHHHHHHHHHH-Hh-cC---CceEEEEEEeCCccccccccccCCCchhH
Q 042752 175 DICCNGFEEVLTQYREIVPSLR-LAGP-TSFAPIIEMATTIV-EK-SG---GQYHVLLIIADGQVTRSVDTQHGQLSSQE 247 (415)
Q Consensus 175 ~p~c~G~egVL~aYr~~l~~v~-LsGP-T~FAPVI~~ai~iv-~~-s~---~~Y~VLLIITDG~ItD~~d~~~~~~~~d~ 247 (415)
-...+.++++-.+ ++ ..|. |+...-|+.|.+.. .. .+ +.-.++++||||...|.+.
T Consensus 80 ---~~~~~~~~~~i~~----l~~~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v~---------- 142 (199)
T 3zqk_A 80 ---AQSKGDILQRLRE----IRYQGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIK---------- 142 (199)
T ss_dssp ---CCCHHHHHHHHHH----CCCCCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCCC----------
T ss_pred ---cCCHHHHHHHHHh----CcCCCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHHH----------
Confidence 1245566555443 33 3454 99988888887642 11 11 2237899999998765221
Q ss_pred HHHHHHHHHhccCCeEEEEEecc-cCCCccccccCC
Q 042752 248 QKTIDAIVQASEFPLSIILVGVG-DGPWDMMKEFDD 282 (415)
Q Consensus 248 ~eTidaIV~AS~lPLSIIiVGVG-d~~F~~Me~LDd 282 (415)
+ + ...+.|.-|||| +.+.+.|+++=.
T Consensus 143 -~-------~-~~~v~v~~iGiG~~~~~~~L~~iA~ 169 (199)
T 3zqk_A 143 -R-------L-PGDIQVVPIGVGPNANVQELERIGW 169 (199)
T ss_dssp -C-------C-CTTEEEEEEEESTTCCHHHHHHHHT
T ss_pred -H-------H-hCCCEEEEEEcCCCCCHHHHHHHhC
Confidence 0 1 256889999999 667777777644
No 23
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=97.06 E-value=0.00076 Score=76.08 Aligned_cols=142 Identities=19% Similarity=0.278 Sum_probs=94.8
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCC-CccceEeeCCCCCCCCCccccCC--C
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDED-NLIPCFGFGDASTHDQDVFSFYP--D 174 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~D-k~iP~fGFGa~~t~d~~vFsf~~--~ 174 (415)
+++++.||-|+|++ .+.++++...+..++..|+.+ -.|-+..|+..... +|.|+. +
T Consensus 131 ~DIvfvlD~SgSm~------------------~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~---~~~lt~~~~ 189 (1095)
T 3k6s_A 131 QDIVFLIDGSGSIS------------------SRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQT---HFTFEEFRR 189 (1095)
T ss_dssp EEEEEEEECCTTSC------------------SHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEE---EECSHHHHS
T ss_pred ccEEEEEcCCCCCC------------------hhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEE---EecCcccCC
Confidence 79999999999984 245778888888888888865 57889999876432 344431 1
Q ss_pred CCCcCCHHHHHHHHHhhCCce-eecCCCChHHHHHHHHHHHH-hc----CCceEEEEEEeCCccc-cccccccCCCchhH
Q 042752 175 DICCNGFEEVLTQYREIVPSL-RLAGPTSFAPIIEMATTIVE-KS----GGQYHVLLIIADGQVT-RSVDTQHGQLSSQE 247 (415)
Q Consensus 175 ~p~c~G~egVL~aYr~~l~~v-~LsGPT~FAPVI~~ai~iv~-~s----~~~Y~VLLIITDG~It-D~~d~~~~~~~~d~ 247 (415)
.. .+ .+++..+ .+.|-|+.+.-|+.|.+.+- .. .+.-.|+|+||||.-+ |.
T Consensus 190 ~~---~l-------~~ai~~i~~~gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~------------ 247 (1095)
T 3k6s_A 190 SS---NP-------LSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDS------------ 247 (1095)
T ss_dssp CS---CG-------GGGTTTCCCCCSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCS------------
T ss_pred HH---HH-------HHHHhhhhcccCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCc------------
Confidence 11 11 1233334 46789999999999877542 11 1234799999999984 31
Q ss_pred HHHHHHHHHhccCCeEEEEEecccC-----CCccccccCC
Q 042752 248 QKTIDAIVQASEFPLSIILVGVGDG-----PWDMMKEFDD 282 (415)
Q Consensus 248 ~eTidaIV~AS~lPLSIIiVGVGd~-----~F~~Me~LDd 282 (415)
....+++.++.+.-+-|..||||+. +.+.|+++=+
T Consensus 248 ~~~~~~a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~~IAs 287 (1095)
T 3k6s_A 248 LDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIAS 287 (1095)
T ss_dssp SCHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHHTTSC
T ss_pred hhHHHHHHHHHHCCCEEEEEecccccccccCHHHHHHHHc
Confidence 2233444444455788999999987 6666666644
No 24
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=96.97 E-value=0.0018 Score=56.78 Aligned_cols=137 Identities=17% Similarity=0.226 Sum_probs=84.9
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCC-ccceEeeCCCCCCCCCccccCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDN-LIPCFGFGDASTHDQDVFSFYPDDI 176 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk-~iP~fGFGa~~t~d~~vFsf~~~~p 176 (415)
+++++.||-|+|++. ..++++...+..++..++.++ .+-+..|+..... +|+|+...
T Consensus 3 ~divfvlD~S~Sm~~------------------~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~---~~~l~~~~- 60 (179)
T 1mjn_A 3 VDLVFLFDGSMSLQP------------------DEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKT---EFDFSDYV- 60 (179)
T ss_dssp EEEEEEEECBTTCCH------------------HHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEE---EECHHHHH-
T ss_pred ccEEEEEeCCCCCCH------------------HHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeE---EEcCcccC-
Confidence 589999999999852 245677777777777776554 7999999876432 34442100
Q ss_pred CcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHH-Hhc----CCceEEEEEEeCCccccccccccCCCchhHHHHH
Q 042752 177 CCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIV-EKS----GGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTI 251 (415)
Q Consensus 177 ~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv-~~s----~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTi 251 (415)
.-..++.++ ..++. +.|.|+...-|+.|.+.. ... .+.-.++++||||.-+|..+ +
T Consensus 61 ~~~~~~~~~----~~i~~--~~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~-----~-------- 121 (179)
T 1mjn_A 61 KRKDPDALL----KHVKH--MLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGN-----I-------- 121 (179)
T ss_dssp HHCCHHHHH----TTCCC--CCBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSC-----C--------
T ss_pred CHHHHHHHH----Hhccc--CCCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcc-----h--------
Confidence 001222222 22332 468899999999988642 221 12457999999999776321 0
Q ss_pred HHHHHhccCCeEEEEEecccCCC-----cccccc
Q 042752 252 DAIVQASEFPLSIILVGVGDGPW-----DMMKEF 280 (415)
Q Consensus 252 daIV~AS~lPLSIIiVGVGd~~F-----~~Me~L 280 (415)
+...-+-|..||||+..- +.|+++
T Consensus 122 -----~~~~~i~i~~igvG~~~~~~~~~~~L~~i 150 (179)
T 1mjn_A 122 -----DAAKDIIRYIIGIGKHFQTKESQETLHKF 150 (179)
T ss_dssp -----GGGTTSEEEEEEESGGGCSHHHHHTTGGG
T ss_pred -----HHHCCCEEEEEEccccccccccHHHHHHH
Confidence 012457788899997532 455555
No 25
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=96.88 E-value=0.0076 Score=63.79 Aligned_cols=156 Identities=11% Similarity=0.203 Sum_probs=100.4
Q ss_pred ceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc---cCCCCccceEeeCCCCCCC----CCcccc
Q 042752 99 NLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSA---FDEDNLIPCFGFGDASTHD----QDVFSF 171 (415)
Q Consensus 99 nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~---YD~Dk~iP~fGFGa~~t~d----~~vFsf 171 (415)
.++++||.|.||.... .+...+..+.|++.|..+++. -.....|-++.||...+.+ .+++-+
T Consensus 37 ~ivf~IDvS~SM~~~d-----------~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~ 105 (609)
T 1jey_A 37 SLIFLVDASKAMFESQ-----------SEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVL 105 (609)
T ss_dssp EEEEEEECSGGGGCCC-----------SSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEE
T ss_pred EEEEEEECCHHHcCCC-----------CCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEE
Confidence 6999999999995321 012468999999999988875 3444689999999876421 223322
Q ss_pred CC-CCCCcCCHHHHHHHHHhhCC--------c-eeecCCCChHHHHHHHHHHHHhcCCc--eEEEEEEeCCccccccccc
Q 042752 172 YP-DDICCNGFEEVLTQYREIVP--------S-LRLAGPTSFAPIIEMATTIVEKSGGQ--YHVLLIIADGQVTRSVDTQ 239 (415)
Q Consensus 172 ~~-~~p~c~G~egVL~aYr~~l~--------~-v~LsGPT~FAPVI~~ai~iv~~s~~~--Y~VLLIITDG~ItD~~d~~ 239 (415)
.+ +.+ +.+ .+...+..+. . +-....|.+.-.|-.|+++.+..+.+ =-++++||||.-.
T Consensus 106 ~~L~~~---~~~-~ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p------ 175 (609)
T 1jey_A 106 QELDNP---GAK-RILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNP------ 175 (609)
T ss_dssp EEEECC---CHH-HHHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCT------
T ss_pred ecCCCC---CHH-HHHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCC------
Confidence 21 111 222 2222222211 0 11146799999999999988765333 3688999999643
Q ss_pred cCCCchhHHHHHHHHHHhccCCeEEEEEecccCC-Cc
Q 042752 240 HGQLSSQEQKTIDAIVQASEFPLSIILVGVGDGP-WD 275 (415)
Q Consensus 240 ~~~~~~d~~eTidaIV~AS~lPLSIIiVGVGd~~-F~ 275 (415)
++.-+........++.++.++-+.|.+||||..+ |+
T Consensus 176 ~~~~~~~~~~~~~~a~~l~~~gI~i~~igig~~~~fd 212 (609)
T 1jey_A 176 HGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFD 212 (609)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTEEEEEEEBCCTTCCC
T ss_pred CCCchHHHHHHHHHHHHHHhcCcEEEEEecCCCCccc
Confidence 2222223456677788888999999999999653 44
No 26
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=96.39 E-value=0.013 Score=61.27 Aligned_cols=150 Identities=14% Similarity=0.186 Sum_probs=96.8
Q ss_pred cCCceeceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc---ccCCCCccceEeeCCCCCCC----
Q 042752 93 AGLESSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLS---AFDEDNLIPCFGFGDASTHD---- 165 (415)
Q Consensus 93 ~Gles~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~---~YD~Dk~iP~fGFGa~~t~d---- 165 (415)
+|-. -.++++||.|.||.... .+ ..+..+.|.+.|..+++ .......+-+..||...+..
T Consensus 4 ~~~k-e~iv~~iDvS~SM~~~d-----------~~-~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~ 70 (565)
T 1jey_B 4 SGNK-AAVVLCMDVGFTMSNSI-----------PG-IESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSG 70 (565)
T ss_dssp --CC-EEEEEEEECCGGGGCCB-----------TT-BCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCT
T ss_pred CCCc-eEEEEEEECChHhcccC-----------CC-CCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCcccc
Confidence 3443 37999999999995310 11 46899999999998888 36677899999999765321
Q ss_pred ----CCccccCCCCCCcCCHHHHHHHHHhhCCceeec-CCCChHHHHHHHHHHHHhc--CCce--EEEEEEeCCcccccc
Q 042752 166 ----QDVFSFYPDDICCNGFEEVLTQYREIVPSLRLA-GPTSFAPIIEMATTIVEKS--GGQY--HVLLIIADGQVTRSV 236 (415)
Q Consensus 166 ----~~vFsf~~~~p~c~G~egVL~aYr~~l~~v~Ls-GPT~FAPVI~~ai~iv~~s--~~~Y--~VLLIITDG~ItD~~ 236 (415)
.+++-+.+-. ... ..+++.-.+ .+..+ +.|.+...|..|+++.+.. +.++ -++++||||.-.-
T Consensus 71 d~~y~~i~vl~~l~--~~~-~~~l~~l~~---~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~-- 142 (565)
T 1jey_B 71 GDQYQNITVHRHLM--LPD-FDLLEDIES---KIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRF-- 142 (565)
T ss_dssp TTCSTTEEEEEEEE--CCC-HHHHHHHHT---TCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCC--
T ss_pred ccCCCceEEeecCC--CCC-HHHHHHHHh---hccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCC--
Confidence 1221111100 011 233333333 23333 6899999999999988765 3334 5889999997441
Q ss_pred ccccCCCchhHHHHHHHHHHhccCCeEEE-EEecccC
Q 042752 237 DTQHGQLSSQEQKTIDAIVQASEFPLSII-LVGVGDG 272 (415)
Q Consensus 237 d~~~~~~~~d~~eTidaIV~AS~lPLSII-iVGVGd~ 272 (415)
+ .....+++..+.+.-+.|. +||+|..
T Consensus 143 ----~-----~~~~~~~a~~l~~~gI~i~~vig~g~~ 170 (565)
T 1jey_B 143 ----S-----KSQLDIIIHSLKKCDISLQFFLPFSLG 170 (565)
T ss_dssp ----C-----CTTHHHHHHHHHHTTEEEEEEESSCCC
T ss_pred ----C-----HHHHHHHHHHHHhcCcEEEEEeccCCC
Confidence 1 1244566777778899999 8999864
No 27
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=96.21 E-value=0.033 Score=57.71 Aligned_cols=139 Identities=12% Similarity=0.160 Sum_probs=82.9
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDIC 177 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~ 177 (415)
.+++|+||.|+||.... . +++| .+.++.-.++-+. . -....+-++.|++... ...+.++
T Consensus 369 ~~v~lvvD~SgSM~~~~---~-~~~l--------~~~~~Aa~l~~~~-~-~~~d~vglv~Fs~~~~----~~~~t~~--- 427 (538)
T 1yvr_A 369 KRFLLAIDVSASMNQRV---L-GSIL--------NASVVAAAMCMLV-A-RTEKDSHMVAFSDEML----PCPITVN--- 427 (538)
T ss_dssp CCEEEEEECSGGGGSBS---T-TSSC--------BHHHHHHHHHHHH-H-HHCSSEEEEEESSSEE----CCSCCTT---
T ss_pred ceEEEEEECccccCCCC---C-CCcH--------HHHHHHHHHHHHH-h-ccCCceEEEEECCCce----EcCCCCc---
Confidence 68999999999996421 0 0111 2233311222111 1 1234688899986321 1223222
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccccccccCCCchhHHHHHHHHHHh
Q 042752 178 CNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQA 257 (415)
Q Consensus 178 c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~A 257 (415)
.++..+++.-. .+ ..|-|+++..|..+.+. ....-++|+||||+.++. .. +..+.++.+.+.
T Consensus 428 -~~l~~~l~~l~----~~-~~GgT~i~~aL~~a~~~----~~~~~~iIliTDg~~~~g------~~--~~~~~l~~~~~~ 489 (538)
T 1yvr_A 428 -MLLHEVVEKMS----DI-TMGSTDCALPMLWAQKT----NTAADIFIVFTDCETNVE------DV--HPATALKQYREK 489 (538)
T ss_dssp -SCHHHHHHHHT----TC-CCSCCCTTHHHHHHHHT----TCCCSEEEEEECCCCCSS------SC--CHHHHHHHHHHH
T ss_pred -ccHHHHHHHHh----cC-CCCCCcHHHHHHHHHhc----cCCCCEEEEEcCCCCCCC------CC--CHHHHHHHHHHH
Confidence 24666655433 22 57889999988888654 233468899999986541 11 134556666766
Q ss_pred ccCCeEEEEEecccCCCc
Q 042752 258 SEFPLSIILVGVGDGPWD 275 (415)
Q Consensus 258 S~lPLSIIiVGVGd~~F~ 275 (415)
.+.++.+++||||.....
T Consensus 490 ~~~~v~l~~igig~~~~~ 507 (538)
T 1yvr_A 490 MGIPAKLIVCAMTSNGFS 507 (538)
T ss_dssp HTCCCEEEEEECSSSSEE
T ss_pred hCCCcEEEEEEecCCCCc
Confidence 678899999999986543
No 28
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=95.18 E-value=0.13 Score=53.45 Aligned_cols=139 Identities=17% Similarity=0.183 Sum_probs=83.4
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDIC 177 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~ 177 (415)
.+++|+||.|+|+.+.+. .. ....+..+.| ..++-++.. .. ..+-++.|++.... + .+.++
T Consensus 363 ~~~lv~vDvSgSM~~~~~-------~~--~~k~~~~e~A-a~la~~~~r-~~-d~v~lv~Fs~~~~~---~-~~~~~--- 423 (535)
T 2nvo_A 363 TRHLLALDVSGSMTCGDV-------AG--VPGLTPNMAA-AAMSLIALR-TE-PDALTMGFAEQFRP---L-GITPR--- 423 (535)
T ss_dssp SEEEEEECCSGGGGSCCG-------GG--CTTCCHHHHH-HHHHHHHHH-HS-SEEEEEEEBSSEEE---C-CCCTT---
T ss_pred ceEEEEEECCccccCCCC-------CC--CCcccHHHHH-HHHHHHHcC-cC-CceEEEEECCcceE---c-CCCcc---
Confidence 689999999999964110 00 1124444434 344433332 22 26888999874211 1 22222
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccccccccCCCchhHHHHHHHHHHh
Q 042752 178 CNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQA 257 (415)
Q Consensus 178 c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~A 257 (415)
.++.++++.- ... ..|.|+++..|+.+.+ .....-+++|||||+... +..++ .+.++...+.
T Consensus 424 -~~l~~~l~~l---~~~--~~ggTdi~~~l~~a~~----~~~~~~~vIliTD~~~~~------g~~~~--~~al~~~r~~ 485 (535)
T 2nvo_A 424 -DTLESAMQKA---QSV--SFGGTDCAQPILWAAQ----ERLDVDTFVVYTDNETWA------GQVHP--TVALDQYAQK 485 (535)
T ss_dssp -CCHHHHHHHT---CCS--SBCCCCTTHHHHHHHH----TTCCCSEEEEEESSCCCC------CSSCH--HHHHHHHHHH
T ss_pred -hhHHHHHHHH---hhC--CCCCccHHHHHHHHHH----hcCCCCEEEEEeCCCccC------CCCCH--HHHHHHHHHh
Confidence 4565555432 221 2689999988877643 234567889999998754 12222 3566666666
Q ss_pred ccCCeEEEEEecccCC
Q 042752 258 SEFPLSIILVGVGDGP 273 (415)
Q Consensus 258 S~lPLSIIiVGVGd~~ 273 (415)
.+.++-+++||||...
T Consensus 486 ~~~~~klv~i~l~~~~ 501 (535)
T 2nvo_A 486 MGRAPKLIVVGLTATE 501 (535)
T ss_dssp HSCCCEEEEEETTCSC
T ss_pred hCCCCeEEEEeccCCC
Confidence 6789999999999864
No 29
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=86.47 E-value=1.8 Score=40.38 Aligned_cols=109 Identities=13% Similarity=0.170 Sum_probs=61.1
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCccccCCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDIC 177 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vFsf~~~~p~ 177 (415)
+.|.+.+|+|.||+. + .+.-+..+..|..-|+.+..+-+|-+-+|-++. ..++++|..
T Consensus 4 vDl~fl~D~S~SM~~------------d----i~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~--~~~~l~lT~---- 61 (212)
T 2iue_A 4 VDLYFLMGLSGSAQG------------H----LSNVQTLGSDLLKALNEISRSGRIGFGSIVNMT--FQHILKLTA---- 61 (212)
T ss_dssp EEEEEEEECCGGGTT------------T----HHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSC--EEEEEEEES----
T ss_pred eEEEEEEeCCCcchh------------H----HHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCc--ceecCCcCC----
Confidence 689999999999974 1 245567777777777777666554433344441 122334422
Q ss_pred cCCHHHHHHHHHhhCCceeecC----CC-ChHHHHHHHHH--HHHhcCCceEEEEEEeCCccccc
Q 042752 178 CNGFEEVLTQYREIVPSLRLAG----PT-SFAPIIEMATT--IVEKSGGQYHVLLIIADGQVTRS 235 (415)
Q Consensus 178 c~G~egVL~aYr~~l~~v~LsG----PT-~FAPVI~~ai~--iv~~s~~~Y~VLLIITDG~ItD~ 235 (415)
..+ .+.+.+...+.+| |- .|.-+++.++. .....+ .-++||++||+.-+..
T Consensus 62 --d~~----~F~~~v~~~~vsg~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~~ 119 (212)
T 2iue_A 62 --DSS----QFQRELRKQLVSGKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHLA 119 (212)
T ss_dssp --CHH----HHHHHHHTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCCT
T ss_pred --CHH----HHHHHHhhccccCCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCcccc
Confidence 222 2333344455555 32 33334443321 122233 5699999999987753
No 30
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=85.23 E-value=3.4 Score=46.02 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=69.9
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHH---HHHHHhhcccccCCCCccceEeeCCCCCCCC--------
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQ---AISIIGKTLSAFDEDNLIPCFGFGDASTHDQ-------- 166 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~Yqq---AI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~-------- 166 (415)
+.++++||.|+||... .+. .....++ |++.+...|.. ..+.+|-+..|+.......
T Consensus 225 ~DIVfVLD~SGSM~~~--------~~~----~~~Rl~~~K~a~~~~ld~L~~-~~~drVgLV~Fs~~a~~~~~~~v~~~~ 291 (893)
T 2ww8_A 225 LDVVILLDNSNSMSNI--------RNK----NARRAERAGEATRSLIDKITS-DSENRVALVTYASTIFDGTEFTVEKGV 291 (893)
T ss_dssp EEEEEEEECCGGGCTT--------HHH----HCCHHHHHHHHHHHHHHHHHT-STTCEEEEEEESSSBCBSCEEEEECCE
T ss_pred ccEEEEEeCCCCCCCc--------Ccc----chhHHHHHHHHHHHHHHHhhc-CCCcEEEEEEecCcccccccccccccc
Confidence 6799999999999631 000 0113444 44444444433 3467899999997432100
Q ss_pred ------------------CccccCCCCCCc-----CCHHHHHHHHHhhCCc----------eeecCCCChHHHHHHHHHH
Q 042752 167 ------------------DVFSFYPDDICC-----NGFEEVLTQYREIVPS----------LRLAGPTSFAPIIEMATTI 213 (415)
Q Consensus 167 ------------------~vFsf~~~~p~c-----~G~egVL~aYr~~l~~----------v~LsGPT~FAPVI~~ai~i 213 (415)
..|... ...+| ...+.+ +.-+..++. +...|-|+...-|+.|+++
T Consensus 292 ~~~~g~~~n~~~~w~~~~t~~t~~-~~~~~~lpLT~d~~~i-~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~l 369 (893)
T 2ww8_A 292 ADKNGKRLNDSLFWNYDQTSFTTN-TKDYSYLKLTNDKNDI-VELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEI 369 (893)
T ss_dssp ECTTCCEECCCTTSCTTCCEEEEE-CCBCCEEEEECCHHHH-HHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccc-ccccccccccCCHHHH-HHHHHHHhhhccccccccccccCCCChHHHHHHHHHHH
Confidence 001000 01122 223333 333444543 3457889999999999998
Q ss_pred HHh-c-CCceEEEEEEeCCcccc
Q 042752 214 VEK-S-GGQYHVLLIIADGQVTR 234 (415)
Q Consensus 214 v~~-s-~~~Y~VLLIITDG~ItD 234 (415)
.++ . ...=-++|+||||+-+.
T Consensus 370 L~~~~~~~~~kvIILLTDG~pt~ 392 (893)
T 2ww8_A 370 LTQQARQNSQKVIFHITDGVPTM 392 (893)
T ss_dssp HHHHSCSSSEEEEEEEESSCCSE
T ss_pred HHhhcccCCCeEEEEEcCCCCCc
Confidence 864 2 23346889999998765
No 31
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=59.40 E-value=6.2 Score=37.69 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=27.9
Q ss_pred ceEEEEEEeCCccccccccccCCCchhHHHHHHHHHHhccCCeEEEEEecccCC
Q 042752 220 QYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQASEFPLSIILVGVGDGP 273 (415)
Q Consensus 220 ~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~AS~lPLSIIiVGVGd~~ 273 (415)
.--++++||||.-+- |. +| .++...|.+.-+-|..||||+.+
T Consensus 9 ~~k~iillTDG~~~~------g~-~p-----~~aa~~a~~~gi~v~tIGig~~~ 50 (242)
T 3rag_A 9 TIRQILVITDGCSNI------GP-DP-----VEAARRAHRHGIVVNVIGIVGRG 50 (242)
T ss_dssp CEEEEEEEESSCCCS------SS-CH-----HHHHHHHHHTTCEEEEEEECCSS
T ss_pred CccEEEEEccCCCCC------CC-CH-----HHHHHHHHHCCCEEEEEEecCCc
Confidence 356889999998542 11 22 23334556677899999998653
No 32
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=55.68 E-value=13 Score=40.14 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=28.6
Q ss_pred HHHHHhhCCceeecCC----C-ChHHHHHHHH--HHHHhcCCceEEEEEEeCCccc
Q 042752 185 LTQYREIVPSLRLAGP----T-SFAPIIEMAT--TIVEKSGGQYHVLLIIADGQVT 233 (415)
Q Consensus 185 L~aYr~~l~~v~LsGP----T-~FAPVI~~ai--~iv~~s~~~Y~VLLIITDG~It 233 (415)
+..+++.+.+++.+|- - -|.-|+..|. +..-...+..++||++||..-+
T Consensus 200 ~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H 255 (690)
T 3fcs_B 200 VTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTH 255 (690)
T ss_dssp HHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBC
T ss_pred HHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCccc
Confidence 3455666666666653 2 3444444442 2222334568999999998766
No 33
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=50.22 E-value=20 Score=34.15 Aligned_cols=92 Identities=15% Similarity=0.201 Sum_probs=56.7
Q ss_pred eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCCcc-ccCCCCC
Q 042752 98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVF-SFYPDDI 176 (415)
Q Consensus 98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~Dk~iP~fGFGa~~t~d~~vF-sf~~~~p 176 (415)
+.+++.||-|+|+. + .......|+..+..-+..+-....|-++.|+........+. .|....
T Consensus 135 ~~vvfLVDtSgSM~--~--------------kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~- 197 (242)
T 3rag_A 135 LHLVVCLDTSASMR--D--------------KIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEV- 197 (242)
T ss_dssp EEEEEEEECSGGGT--T--------------THHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSC-
T ss_pred CCEEEEEECcccHH--H--------------HHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChH-
Confidence 68999999999994 1 12233444444433333343567999999998643222122 332221
Q ss_pred CcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHh
Q 042752 177 CCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEK 216 (415)
Q Consensus 177 ~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~ 216 (415)
-+. +.++.+...|-|...+-|+.|.++.++
T Consensus 198 ---~~~-------~~l~~L~agG~Tplg~AL~~A~~~~~~ 227 (242)
T 3rag_A 198 ---NVA-------ALEAELVARGGTPTGPAIDHAADLLLS 227 (242)
T ss_dssp ---CHH-------HHHHHCCCCSCCCHHHHHHHHHHHHHH
T ss_pred ---HHH-------HHHhhCCCCCCCcHHHHHHHHHHHHHH
Confidence 222 233456679999999999999988754
No 34
>3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii}
Probab=35.10 E-value=60 Score=33.61 Aligned_cols=144 Identities=15% Similarity=0.205 Sum_probs=77.4
Q ss_pred cccHHHHHHHHHhcCCceeceEEEEeccCCCCCC---CCCCCCCCCccccCCC-----CCHHHHHHHHHhhcccccCCCC
Q 042752 80 YKSLDQVTGALAHAGLESSNLIVGIDFTKSNEWT---GSRSFNRRSLHHIGHG-----QNPYEQAISIIGKTLSAFDEDN 151 (415)
Q Consensus 80 yssld~V~~aL~~~Gles~nliVaIDFT~SN~~t---g~~s~~~~SLHyi~~~-----~N~YqqAI~~Ig~iL~~YD~Dk 151 (415)
-.-||-|..|..++|.+ -.+.+|+|+.+|--+. |+ | .|.+-++. .=.-+++|.-+.+.++.|+
T Consensus 228 ~eaL~ll~~Ai~~aGy~-~~i~i~lD~Aasefy~~~~g~--Y---~l~fk~~~~~~~~~~t~~Elid~y~~lle~yp--- 298 (452)
T 3otr_A 228 EEALNLLVEAIKAAGYE-GKIKIAFDAAASEFYKQDEKK--Y---DLDYKCKTKNASKHLTGEKLKEVYEGWLKKYP--- 298 (452)
T ss_dssp HHHHHHHHHHHHHHTCT-TTSEEEEECCGGGGEETTTTE--E---ETTTTCSSCCGGGEECHHHHHHHHHHHHHHSC---
T ss_pred HHHHHHHHHHHHHcCCC-ceEEEccccchHhheeccCCe--E---EeeccCCCCcccccccHHHHHHHHHHHHhhhC---
Confidence 34588899999999998 5999999999985431 11 0 11111110 0124888888888888775
Q ss_pred ccceEeeCCCCCCCCCccccCCCCCCc-CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCceEEEEEEeC-
Q 042752 152 LIPCFGFGDASTHDQDVFSFYPDDICC-NGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIAD- 229 (415)
Q Consensus 152 ~iP~fGFGa~~t~d~~vFsf~~~~p~c-~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~~~Y~VLLIITD- 229 (415)
+.-+ ++|.- ..++++-...++.-..+++.|-..|.--.+.+.+.++...-. .|++=+..
T Consensus 299 ---Iv~I---------------EDPl~~dD~eg~a~Lt~~lg~~iqIvGDDl~vTn~~~i~~~Ie~~a~n-~IlIKvnQI 359 (452)
T 3otr_A 299 ---IISV---------------EDPFDQDDFASFSAFTKDVGEKTQVIGDDILVTNILRIEKALKDKACN-CLLLKVNQI 359 (452)
T ss_dssp ---EEEE---------------ECCSCTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHHTCCS-EEEECHHHH
T ss_pred ---ceEE---------------ecCCChhhHHHHHHHHHhhCCCeEEEeCccccCCHHHHHHHHhcCCCC-EEEeecccc
Confidence 3333 22211 245555444444434577766654422123333333332211 22221221
Q ss_pred CccccccccccCCCchhHHHHHHHHHHhccCCeEEEE
Q 042752 230 GQVTRSVDTQHGQLSSQEQKTIDAIVQASEFPLSIIL 266 (415)
Q Consensus 230 G~ItD~~d~~~~~~~~d~~eTidaIV~AS~lPLSIIi 266 (415)
|.|+ ++++++.-|-..-+.+++
T Consensus 360 GgIT---------------Ealka~~lA~~~G~~vmv 381 (452)
T 3otr_A 360 GSVT---------------EAIEACLLAQKSGWGVQV 381 (452)
T ss_dssp CCHH---------------HHHHHHHHHHHTTCEEEE
T ss_pred ccHH---------------HHHHHHHHHHHcCCeEEE
Confidence 5554 677777777666655443
No 35
>3m0m_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM isomerase; HET: AOS; 1.45A {Pseudomonas stutzeri} PDB: 3m0l_A* 3m0h_A* 3m0v_A* 3m0x_A* 3m0y_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itv_A* 3itt_A* 3itl_A* 3ito_A* 4gji_A* 4gjj_A*
Probab=31.86 E-value=60 Score=33.20 Aligned_cols=112 Identities=21% Similarity=0.265 Sum_probs=62.2
Q ss_pred CccceEeeCCCCCCCCCccccCCCCCCcCCHHHHHHHHHhh------CCceeecCCCChHHHHHHHHHHHHhcCCceEEE
Q 042752 151 NLIPCFGFGDASTHDQDVFSFYPDDICCNGFEEVLTQYREI------VPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVL 224 (415)
Q Consensus 151 k~iP~fGFGa~~t~d~~vFsf~~~~p~c~G~egVL~aYr~~------l~~v~LsGPT~FAPVI~~ai~iv~~s~~~Y~VL 224 (415)
-.+||||||..-+. +..|+. |.. -+.+++.++.-.++ .+.|.|..|-.. .-++...+.+++.+-. +.
T Consensus 52 is~~~W~f~~~g~~-~~~~~~-~g~--~r~~~e~~~d~~~v~~l~~~~~~v~lH~p~d~-~d~~~lk~~l~e~GL~--l~ 124 (438)
T 3m0m_A 52 VAVPSWGVGTGGTR-FARFPG-TGE--PRGIFDKLDDCAVIQQLTRATPNVSLHIPWDK-ADPKELKARGDALGLG--FD 124 (438)
T ss_dssp CBEEGGGSSBCBCS-SCBCCC-SSC--CCSHHHHHHHHHHHHHHHSCCCEEEEETTTTC-CCHHHHHHHHHHHTCE--EE
T ss_pred eeeceecccCCCCc-cccCCC-CCC--CCCHHHHHHHHHHHhcccCCCcceeecCCccH-HHHHHHHHHHHHcCCc--eE
Confidence 56999999975443 334442 322 24566666555443 477899988755 4455666667776643 32
Q ss_pred EE----EeC--CccccccccccCCCc-hhH-------HHHHHHHHHhccCCeEEEEEecccC
Q 042752 225 LI----IAD--GQVTRSVDTQHGQLS-SQE-------QKTIDAIVQASEFPLSIILVGVGDG 272 (415)
Q Consensus 225 LI----ITD--G~ItD~~d~~~~~~~-~d~-------~eTidaIV~AS~lPLSIIiVGVGd~ 272 (415)
-| +++ |+... ...|.|+ +|. +..+++|..|..+....+.+-.|++
T Consensus 125 ~i~~~~f~hp~~~~~~---Y~~GnLtspD~~vR~~Ai~~lk~~Id~A~~LGa~~lv~w~GdG 183 (438)
T 3m0m_A 125 AMNSNTFSDAPGQAHS---YKYGSLSHTNAATRAQAVEHNLECIEIGKAIGSKALTVWIGDG 183 (438)
T ss_dssp EEECCCSSCCTTCSSC---CTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCCE
T ss_pred EeecccccCchhcccc---cccCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 22 222 11111 0112222 222 3567777788888777777766643
No 36
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica}
Probab=25.77 E-value=1.3e+02 Score=30.90 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=42.0
Q ss_pred cccHHHHHHHHHhcCCceeceEEEEeccCCCCCCCC-CCCCCCCccccCC-------CCCHHHHHHHHHhhcccccC
Q 042752 80 YKSLDQVTGALAHAGLESSNLIVGIDFTKSNEWTGS-RSFNRRSLHHIGH-------GQNPYEQAISIIGKTLSAFD 148 (415)
Q Consensus 80 yssld~V~~aL~~~Gles~nliVaIDFT~SN~~tg~-~s~~~~SLHyi~~-------~~N~YqqAI~~Ig~iL~~YD 148 (415)
-.-||-|..|..++|.+ -.+.+|+|+.+|--+..+ ..| .|.+-++ ..=.-+++|.-+.+.++.|+
T Consensus 224 ~eaL~ll~~Ai~~aGy~-~~i~i~lD~Aasefy~~~~g~Y---~l~f~~~~~~~~~~~~~t~~elid~y~~lle~yp 296 (441)
T 3qtp_A 224 REALDLLVEAIAKAGYT-GKIEIAMDCAASEFYNEETKKY---DLGKKIPADKKDPSLVKDVDGLIAEYVDYGKHYP 296 (441)
T ss_dssp HHHHHHHHHHHHHHTCT-TTCEEEEECCGGGGEETTTTEE---ETTTTSCGGGCCGGGEECHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcCCC-ceEEEccchhHHHhhhccCCeE---EeecCCcccccccccccCHHHHHHHHHHHhhhcc
Confidence 34588899999999998 599999999998644210 001 1211111 00124888888888888775
No 37
>1zo0_A ODC-AZ, ornithine decarboxylase antizyme; ornithine decarboxylase inhibitor, lyase inhibitor; NMR {Rattus norvegicus} SCOP: d.108.1.7
Probab=25.14 E-value=10 Score=33.07 Aligned_cols=35 Identities=29% Similarity=0.541 Sum_probs=30.3
Q ss_pred ccccceeheeccccccccCCCCCCCCchhhhhhhhhhhhhhhh
Q 042752 363 RQFAPRFFIWFGYSLLADSNAEVPSRDKRGCQKLIGHEFMAYR 405 (415)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (415)
++.++|.|.|.|....+-...-+|+++ ++-||+|.
T Consensus 90 r~~l~rtF~f~GFe~v~P~hp~~P~~~--------d~~~M~Y~ 124 (126)
T 1zo0_A 90 RAALLRTFSFLGFEIVRPGHPLVPKRP--------DACFMVYT 124 (126)
T ss_dssp HHHHHHHHTTTCCEEECCCCSSCSSCS--------CCEEEEEC
T ss_pred hHhhheeeeecceEEeCCCCCCCCCCC--------CeEEEEEe
Confidence 378999999999999999999999986 36788884
No 38
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=20.81 E-value=88 Score=33.86 Aligned_cols=18 Identities=22% Similarity=0.093 Sum_probs=14.9
Q ss_pred CCceeceEEEEeccCCCCC
Q 042752 94 GLESSNLIVGIDFTKSNEW 112 (415)
Q Consensus 94 Gles~nliVaIDFT~SN~~ 112 (415)
+.. +.|.+-+|+|.||+.
T Consensus 102 ~yp-vDly~LmD~S~SM~d 119 (687)
T 3k6s_B 102 GYP-IDLYYLMDLSYSMLD 119 (687)
T ss_dssp CCC-CEEEEEEECSSTTHH
T ss_pred CCc-eeEEEEEcCCcchHH
Confidence 443 899999999999963
Done!