BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042753
(473 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 135/474 (28%), Positives = 213/474 (44%), Gaps = 45/474 (9%)
Query: 7 HILVYPFPTSGHIIPXXXXXXXXXXXXXXXXXXXXQNNLP-------LLDSLNANHPSTS 59
H+ + P P GH+IP P +LDSL +S
Sbjct: 8 HVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSL-----PSS 62
Query: 60 LQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPAL---LDWFKSHPSPPVAILSDFFLGW 116
+ S+ LP S +TR+ + + P L D F P A++ D F
Sbjct: 63 ISSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTD 122
Query: 117 TQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVD--ALVSFPRVPNCPVYP 174
+A E +P +F P+ A LS + LP D+ + + L +P C
Sbjct: 123 AFDVAVEFHVPPYIFYPTTANVLS----FFLHLPKLDETVSCEFRELTEPLMLPGCVPVA 178
Query: 175 WYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDR-- 232
+ K+ W LH N K + GI+ N+F ELE I ++ E G D+
Sbjct: 179 GKDFLDPAQDRKDDAYKWLLH--NTKRYKEAEGILVNTFFELEPNAIKALQ-EPGLDKPP 235
Query: 233 VWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIH 292
V+ VGP++ ++ + + + L WLD++ SV+YV FGS LT +Q++
Sbjct: 236 VYPVGPLV--------NIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLN 287
Query: 293 ELAAALEKTDVDFVYCVREPD--------ERHASQD-CGVLPDGFEDRVAGRGYVIRGWS 343
ELA L ++ F++ +R P + H+ D LP GF +R RG+VI W+
Sbjct: 288 ELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWA 347
Query: 344 QQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVG 403
Q +L H + G FLTHCGWNS LE V +G+ ++ WP+ A+Q NA LL + + +R
Sbjct: 348 PQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPR 407
Query: 404 EGTRNIPESDELARLLAQSVDGPRRE--RLKARELSGAALSAVVKGGSSDRDLN 455
G + +E+AR++ ++G + R K +EL AA + G+S + L+
Sbjct: 408 AGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALS 461
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 148 bits (373), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 210/449 (46%), Gaps = 79/449 (17%)
Query: 48 LDSLNANHPSTSLQSL--VLPQPKWPAGSPATRLLKFMRVLRELHYPALLDWFKSHPSPP 105
+ S+ A+ P L L V P P+ SP +L F+ L H A + S+
Sbjct: 59 IKSVLASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIP-HVKATIKTILSNKV-- 115
Query: 106 VAILSDFFLGWTQGLAAELGLPRVVFSPS--GAFALSVSFAMWTDLPTNDDPDNVDALVS 163
V ++ DFF + E G+P +F S G +L +S DD D L++
Sbjct: 116 VGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLN 175
Query: 164 FPRVPN---CPVYP------------WYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGI 208
P + N V P +Y+++ +R K GI
Sbjct: 176 IPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTK--------------------GI 215
Query: 209 VFNSFAELERVYIDHMKKEMGHDR----VWAVGPVL----PPDDDLVESMCRGGSSSVPA 260
+ N+F++LE+ ID + HD ++AVGP+L P+ L ++
Sbjct: 216 IVNTFSDLEQSSIDAL---YDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQ---------- 262
Query: 261 HD-VLTWLDSRRDESVVYVCFGSRYV-LTAKQIHELAAALEKTDVDFVYCVREPDERHAS 318
HD +L WLD + D+SVV++CFGS V QI E+A L+ + V F++ S
Sbjct: 263 HDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS--------NS 314
Query: 319 QDCGVLPDGFED--RVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVM 376
+ V P+GF + + G+G +I GW+ QV +L HKA+G F++HCGWNS+LE + GV +
Sbjct: 315 AEKKVFPEGFLEWMELEGKG-MICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPI 373
Query: 377 LTWPMDADQYTNAQLLVDQLGVGIRVGEGTR---NIPESDELARLLAQSVDGPRRERLKA 433
LTWP+ A+Q NA LV + GVG+ + R ++ ++E+ + L +D K
Sbjct: 374 LTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKV 433
Query: 434 RELSGAALSAVVKGGSSDRDLNDFIKRIN 462
+E+ + +AVV GGSS + I I
Sbjct: 434 QEMKEMSRNAVVDGGSSLISVGKLIDDIT 462
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 147 bits (372), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 210/449 (46%), Gaps = 79/449 (17%)
Query: 48 LDSLNANHPSTSLQSL--VLPQPKWPAGSPATRLLKFMRVLRELHYPALLDWFKSHPSPP 105
+ S+ A+ P L L V P P+ SP +L F+ L H A + S+
Sbjct: 59 IKSVLASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIP-HVKATIKTILSNKV-- 115
Query: 106 VAILSDFFLGWTQGLAAELGLPRVVFSPS--GAFALSVSFAMWTDLPTNDDPDNVDALVS 163
V ++ DFF + E G+P +F S G +L +S DD D L++
Sbjct: 116 VGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLN 175
Query: 164 FPRVPN---CPVYP------------WYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGI 208
P + N V P +Y+++ +R K GI
Sbjct: 176 IPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTK--------------------GI 215
Query: 209 VFNSFAELERVYIDHMKKEMGHDR----VWAVGPVL----PPDDDLVESMCRGGSSSVPA 260
+ N+F++LE+ ID + HD ++AVGP+L P+ L ++
Sbjct: 216 IVNTFSDLEQSSIDAL---YDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQ---------- 262
Query: 261 HD-VLTWLDSRRDESVVYVCFGSRYV-LTAKQIHELAAALEKTDVDFVYCVREPDERHAS 318
HD +L WLD + D+SVV++CFGS V QI E+A L+ + V F++ S
Sbjct: 263 HDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS--------NS 314
Query: 319 QDCGVLPDGFED--RVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVM 376
+ V P+GF + + G+G +I GW+ QV +L HKA+G F++HCGWNS+LE + GV +
Sbjct: 315 AEKKVFPEGFLEWMELEGKG-MICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPI 373
Query: 377 LTWPMDADQYTNAQLLVDQLGVGIRVGEGTR---NIPESDELARLLAQSVDGPRRERLKA 433
LTWP+ A+Q NA LV + GVG+ + R ++ ++E+ + L +D K
Sbjct: 374 LTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKV 433
Query: 434 RELSGAALSAVVKGGSSDRDLNDFIKRIN 462
+E+ + +AVV GGSS + I I
Sbjct: 434 QEMKEMSRNAVVDGGSSLISVGKLIDDIT 462
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 179/378 (47%), Gaps = 37/378 (9%)
Query: 104 PPVAIL-SDFFLGWTQGLAAELGLPRVV-FSPSGAFALSV----SFAMWTDLPTNDDPDN 157
PPV L SD + +T A E LP V+ FS S L+V SF +P D+
Sbjct: 117 PPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYL 176
Query: 158 VDALVSFPR--VPNCPVYPWYQISHLYRTLKEGDP--DWDLHRSNMMANKTSWGIVFNSF 213
+ + +P + I RT D ++ + ++ + T+ I+ N+F
Sbjct: 177 TNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTT--ILLNTF 234
Query: 214 AELERVYIDHMKKEMGHDRVWAVGPVLP------PDDDLVESMCRGGSSSVPAHD--VLT 265
ELE I+ + + ++ +GP LP P ++S+ S++ D L
Sbjct: 235 NELESDVINALSSTI--PSIYPIGP-LPSLLKQTPQIHQLDSL----DSNLWKEDTECLD 287
Query: 266 WLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLP 325
WL+S+ SVVYV FGS V+T +Q+ E A L F++ +R PD +
Sbjct: 288 WLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIR-PDLVIGGS--VIFS 344
Query: 326 DGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQ 385
F + +A RG +I W Q +L H ++G FLTHCGWNS E + AGV ML WP ADQ
Sbjct: 345 SEFTNEIADRG-LIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQ 403
Query: 386 YTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERL--KARELSGAALSA 443
T+ + + ++ +G+ + + +ELA+L+ + + G + +++ KA EL A
Sbjct: 404 PTDCRFICNEWEIGMEIDTNVK----REELAKLINEVIAGDKGKKMKQKAMELKKKAEEN 459
Query: 444 VVKGGSSDRDLNDFIKRI 461
GG S +LN IK +
Sbjct: 460 TRPGGCSYMNLNKVIKDV 477
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 110/412 (26%), Positives = 187/412 (45%), Gaps = 55/412 (13%)
Query: 72 AGSPATRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVF 131
AG P + F R E ++ P +++D F+ + +AAE+G+ + F
Sbjct: 80 AGRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPF 139
Query: 132 SPSGAFALSVSF---AMWTDLPTNDDPDNVDALVSFPRVPNCPVYPWYQISHL-YRTLKE 187
+G +LS + + + D L++F +P +S + +R L+E
Sbjct: 140 WTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNF--IPG--------MSKVRFRDLQE 189
Query: 188 GDPDWDL--------HRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAVGP- 238
G +L HR + K + + NSF EL+ + +K ++ +GP
Sbjct: 190 GIVFGNLNSLFSRMLHRMGQVLPKAT-AVFINSFEELDDSLTNDLKSKL--KTYLNIGPF 246
Query: 239 --VLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAA 296
+ PP + C L WL R+ SVVY+ FG+ ++ L+
Sbjct: 247 NLITPPPVVPNTTGC------------LQWLKERKPTSVVYISFGTVTTPPPAEVVALSE 294
Query: 297 ALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGA 356
ALE + V F++ +R+ H LP+GF ++ G G V+ W+ Q +L H+AVGA
Sbjct: 295 ALEASRVPFIWSLRDKARVH-------LPEGFLEKTRGYGMVVP-WAPQAEVLAHEAVGA 346
Query: 357 FLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELA 416
F+THCGWNS+ E V+ GV ++ P DQ N +++ D L +G+R+ G +S ++
Sbjct: 347 FVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGV--FTKSGLMS 404
Query: 417 ---RLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINELK 465
++L+Q RE L+A L A AV GSS + + +++ K
Sbjct: 405 CFDQILSQEKGKKLRENLRA--LRETADRAVGPKGSSTENFITLVDLVSKPK 454
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 108/409 (26%), Positives = 178/409 (43%), Gaps = 44/409 (10%)
Query: 65 LPQPKWPAGSPATRLLKFMRVLRELHYPALLDWFKSHPSPPVAIL-SDFFLGWTQGLAAE 123
LP+ +G+P + F++ ++E ++ ++D + + L +D F + LA E
Sbjct: 78 LPKGYVSSGNPREPIFLFIKAMQE-NFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEE 136
Query: 124 LGLPRVVFSPSGAFALSVSFAMWTDLPTND-------DPDNVDALVSFP--RVPNCPVYP 174
+ V +G +L ++TDL D ++D L FP + + P
Sbjct: 137 MHAKWVPLWTAGPHSLLTH--VYTDLIREKTGSKEVHDVKSIDVLPGFPELKASDLPEGV 194
Query: 175 WYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVW 234
I + T+ LH+ + + + + NSFA + + + + + +
Sbjct: 195 IKDIDVPFATM--------LHKMGLELPRAN-AVAINSFATIHPLIENELNSKF--KLLL 243
Query: 235 AVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHEL 294
VGP ++ H L WLD + SVVY+ FGS ++ L
Sbjct: 244 NVGPF---------NLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTAL 294
Query: 295 AAALEKTDVDFVYCVR-EPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKA 353
A +LE+ F++ R +P E+ LP GF +R +G ++ W+ QV IL+H +
Sbjct: 295 AESLEECGFPFIWSFRGDPKEK--------LPKGFLERTKTKGKIV-AWAPQVEILKHSS 345
Query: 354 VGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESD 413
VG FLTH GWNSVLE + GV M++ P DQ N L L +G+ V G ES
Sbjct: 346 VGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLT-KESI 404
Query: 414 ELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRIN 462
+ A L S + R K +L +A AV + G+S D I+ +
Sbjct: 405 KKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVT 453
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 339 IRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGV 398
+ W Q+ IL + AF+TH G S +E +S V M+ P A+Q NA+ +V +LG+
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIV-ELGL 365
Query: 399 GIRVGEGTRNIPESDELARLLAQSV 423
G R+IP A L ++V
Sbjct: 366 G-------RHIPRDQVTAEKLREAV 383
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 75/191 (39%), Gaps = 31/191 (16%)
Query: 273 ESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRV 332
E VV V GS + E A ++ + V + + + G LPD E
Sbjct: 232 EKVVLVSLGSAFTKQPAFYRECVRAF--GNLPGWHLVLQIGRKVTPAELGELPDNVE--- 286
Query: 333 AGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLL 392
+ W Q+AILR + F+TH G EG++ M+ P DQ+ NA +L
Sbjct: 287 ------VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML 338
Query: 393 VDQLGVGIRVGEGTRNIPESDELARLLAQS----VDGPRRERLKARELSGAALSAVVKGG 448
G+G+ R + + A LL ++ VD P AR L +GG
Sbjct: 339 ---QGLGV-----ARKLATEEATADLLRETALALVDDPE----VARRLRRIQAEMAQEGG 386
Query: 449 SSDRDLNDFIK 459
+ R D I+
Sbjct: 387 T--RRAADLIE 395
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 326 DGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQ 385
DG + G + W Q +L H AF+TH G N + E + G+ + P+ ADQ
Sbjct: 59 DGNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
Query: 386 YTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP 426
N + G +RV N S +L L + ++ P
Sbjct: 119 PDNIAHXKAR-GAAVRV---DFNTXSSTDLLNALKRVINDP 155
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 24/147 (16%)
Query: 291 IHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILR 350
+ + AA + D DFV + + D G LP R GW+ +LR
Sbjct: 252 VEPIIAAAGEVDADFVLALGDLD----ISPLGTLP---------RNVRAVGWTPLHTLLR 298
Query: 351 HKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTN-AQLLVDQLGVGIRVGEGTRNI 409
A + H G +V+ + AG+ L P DQ+ + A+ V + G+G+ T +
Sbjct: 299 --TCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGL---VSTSDK 353
Query: 410 PESDELARLLAQSVDGPRRERLKAREL 436
++D L RL+ G R ARE+
Sbjct: 354 VDADLLRRLI-----GDESLRTAAREV 375
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 344 QQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQ---YTNAQLLVDQLGVGI 400
+++ I+R +G + G N + EG+ V L +DAD+ + + L+ +G
Sbjct: 489 ERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 548
Query: 401 RVGEGTRNIPESDELARLLAQSVDGPRRER 430
R EG R I +D++ + + +++ +R R
Sbjct: 549 RNAEG-RVIMYADKITKSMEIAINETKRRR 577
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 344 QQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQ---YTNAQLLVDQLGVGI 400
+++ I+R +G + G N + EG+ V L +DAD+ + + L+ +G
Sbjct: 483 ERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 542
Query: 401 RVGEGTRNIPESDELARLLAQSVDGPRRER 430
R EG R I +D++ + + +++ +R R
Sbjct: 543 RNAEG-RVIMYADKITKSMEIAINETKRRR 571
>pdb|3D0Q|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
pdb|3D0Q|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
Length = 398
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 24/147 (16%)
Query: 291 IHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILR 350
+ + AA + D DFV + + D G LP R GW+ +LR
Sbjct: 252 VEPIIAAAGEVDADFVLALGDLD----ISPLGTLP---------RNVRAVGWTPLHTLLR 298
Query: 351 HKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTN-AQLLVDQLGVGIRVGEGTRNI 409
A + H G +V + AG+ L P DQ+ + A+ V + G+G+ T +
Sbjct: 299 --TCTAVVHHGGGGTVXTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGL---VSTSDK 353
Query: 410 PESDELARLLAQSVDGPRRERLKAREL 436
++D L RL+ G R ARE+
Sbjct: 354 VDADLLRRLI-----GDESLRTAAREV 375
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 48/131 (36%), Gaps = 25/131 (19%)
Query: 262 DVLTWLDSR-RDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQD 320
D+ WL SR +VY+ G+ T + + L D D +
Sbjct: 230 DLPAWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVA------------ 277
Query: 321 CGVLPDGFEDRVAGRGYV-----IRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVV 375
G V+G G V + W Q A+L H V + H G + L + AGV
Sbjct: 278 -----SGPSLDVSGLGEVPANVRLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVP 330
Query: 376 MLTWPMDADQY 386
L++P D +
Sbjct: 331 QLSFPWAGDSF 341
>pdb|1BLF|A Chain A, Structure Of Diferric Bovine Lactoferrin At 2.8 Angstroms
Resolution
Length = 689
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 273 ESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQ 319
+S +Y+ GSRY+ T K + E A ++ V+C P+E+ Q
Sbjct: 315 DSALYL--GSRYLTTLKNLRETAEEVKARYTRVVWCAVGPEEQKKCQ 359
>pdb|2QKD|A Chain A, Crystal Structure Of Tandem Zpr1 Domains
Length = 404
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 18/140 (12%)
Query: 335 RGYVIRGWSQQVAILRHKAVGAF-LTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLV 393
R R ++ R V +F HCGWN+ E SAG + DQ L V
Sbjct: 20 RNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNT-EIQSAGRIQ-------DQGVRYTLTV 71
Query: 394 ----DQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSA----VV 445
D ++ T IPE D +Q E L +R +SG V
Sbjct: 72 RSQEDMNREVVKTDSATTRIPELDFEIPAFSQKGALTTVEGLISRAISGLEQDQPTRRAV 131
Query: 446 KGGSSDRDLNDFIKRINELK 465
+G ++R +++FI ++ +LK
Sbjct: 132 EGAIAER-IDEFIGKLKDLK 150
>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State
Length = 593
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 350 RHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNI 409
RHK G L W + EG L P +Q N +VDQ ++ GTR I
Sbjct: 47 RHKQQGQPLYKDSW-LLREG-------LNKPESNEQRQNGLKMVDQAIWSKKMSNGTRRI 98
Query: 410 PESDELAR 417
P S E AR
Sbjct: 99 PVSPEQAR 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,381,117
Number of Sequences: 62578
Number of extensions: 613012
Number of successful extensions: 1275
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1246
Number of HSP's gapped (non-prelim): 23
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)