Query 042753
Match_columns 473
No_of_seqs 131 out of 1256
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 09:04:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02863 UDP-glucoronosyl/UDP- 100.0 4.2E-67 9.1E-72 521.2 49.5 450 5-464 9-472 (477)
2 PLN02992 coniferyl-alcohol glu 100.0 1.5E-66 3.4E-71 513.8 47.9 438 3-464 3-470 (481)
3 PLN02534 UDP-glycosyltransfera 100.0 3.6E-66 7.8E-71 513.2 48.7 455 5-466 8-489 (491)
4 PLN03007 UDP-glucosyltransfera 100.0 6E-66 1.3E-70 517.5 48.7 453 1-464 1-481 (482)
5 PLN02670 transferase, transfer 100.0 3.1E-65 6.7E-70 504.1 47.3 450 1-465 1-467 (472)
6 PLN02173 UDP-glucosyl transfer 100.0 5E-65 1.1E-69 500.4 46.2 430 1-462 1-447 (449)
7 PLN02410 UDP-glucoronosyl/UDP- 100.0 7.1E-65 1.5E-69 501.8 46.7 428 4-463 6-450 (451)
8 PLN02208 glycosyltransferase f 100.0 6.9E-65 1.5E-69 500.6 45.9 422 5-464 4-440 (442)
9 PLN02555 limonoid glucosyltran 100.0 1.4E-64 3.1E-69 501.2 47.4 446 5-465 7-471 (480)
10 PLN02764 glycosyltransferase f 100.0 1.9E-64 4.1E-69 494.5 46.3 432 3-468 3-450 (453)
11 PLN03015 UDP-glucosyl transfer 100.0 2.4E-64 5.2E-69 495.2 46.7 438 6-461 4-466 (470)
12 PLN02562 UDP-glycosyltransfera 100.0 3.6E-64 7.9E-69 498.3 45.8 431 5-462 6-448 (448)
13 PLN02210 UDP-glucosyl transfer 100.0 5.7E-64 1.2E-68 497.4 46.7 434 5-462 8-454 (456)
14 PLN03004 UDP-glycosyltransfera 100.0 3.1E-64 6.7E-69 495.1 43.4 430 5-452 3-450 (451)
15 PLN02207 UDP-glycosyltransfera 100.0 1.2E-63 2.7E-68 492.3 45.8 440 6-465 4-467 (468)
16 PLN02152 indole-3-acetate beta 100.0 1.4E-63 3E-68 491.0 44.1 431 6-461 4-454 (455)
17 PLN00164 glucosyltransferase; 100.0 3.2E-63 6.9E-68 495.1 47.2 444 6-466 4-476 (480)
18 PLN00414 glycosyltransferase f 100.0 5.4E-63 1.2E-67 487.7 46.4 424 5-466 4-443 (446)
19 PLN02554 UDP-glycosyltransfera 100.0 1E-62 2.3E-67 493.4 45.2 443 6-464 3-479 (481)
20 PLN02448 UDP-glycosyltransfera 100.0 3.5E-62 7.5E-67 488.0 47.7 435 5-464 10-458 (459)
21 PLN02167 UDP-glycosyltransfera 100.0 2.7E-61 5.8E-66 482.5 46.6 444 6-463 4-472 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 9.8E-51 2.1E-55 408.0 30.8 410 4-471 19-475 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.9E-51 4.2E-56 420.5 2.5 403 6-471 1-451 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.1E-43 2.4E-48 352.0 32.2 370 11-461 1-390 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 2.6E-43 5.6E-48 351.0 23.9 373 6-457 1-398 (401)
26 KOG1192 UDP-glucuronosyl and U 100.0 1.1E-42 2.5E-47 355.9 20.9 423 5-471 5-463 (496)
27 COG1819 Glycosyl transferases, 100.0 1.2E-41 2.6E-46 333.4 23.3 384 5-463 1-401 (406)
28 PRK12446 undecaprenyldiphospho 100.0 7.6E-27 1.6E-31 226.1 26.9 323 5-435 1-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 7.4E-24 1.6E-28 204.4 26.3 302 6-422 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 2.1E-22 4.6E-27 192.6 27.9 312 6-426 1-325 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 7.6E-22 1.7E-26 189.9 24.3 307 7-430 1-318 (321)
32 PRK00726 murG undecaprenyldiph 99.9 5.6E-19 1.2E-23 173.2 30.8 343 5-461 1-355 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 7E-17 1.5E-21 158.0 30.8 323 7-435 1-333 (350)
34 TIGR01133 murG undecaprenyldip 99.7 1.4E-15 3.1E-20 148.6 28.9 317 6-434 1-329 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.7 8.7E-16 1.9E-20 151.1 25.5 353 5-459 5-384 (385)
36 PRK13609 diacylglycerol glucos 99.7 2.4E-15 5.3E-20 148.7 26.1 167 271-463 200-371 (380)
37 TIGR03590 PseG pseudaminic aci 99.7 5.8E-15 1.3E-19 138.6 21.0 254 15-391 13-278 (279)
38 COG4671 Predicted glycosyl tra 99.7 5.5E-14 1.2E-18 128.4 24.3 336 5-426 9-366 (400)
39 PRK13608 diacylglycerol glucos 99.7 5.5E-14 1.2E-18 139.1 26.8 168 271-464 200-372 (391)
40 PRK00025 lpxB lipid-A-disaccha 99.6 2.2E-13 4.7E-18 134.8 26.5 351 5-462 1-376 (380)
41 PLN02605 monogalactosyldiacylg 99.5 4E-12 8.6E-17 125.6 26.8 173 261-460 194-378 (382)
42 PF04101 Glyco_tran_28_C: Glyc 99.5 2.8E-15 6.2E-20 130.1 -0.9 137 275-426 1-145 (167)
43 TIGR03492 conserved hypothetic 99.4 1.2E-10 2.7E-15 114.8 28.2 351 15-459 6-394 (396)
44 cd03814 GT1_like_2 This family 99.4 1.3E-09 2.9E-14 106.5 32.1 346 7-461 1-363 (364)
45 PF03033 Glyco_transf_28: Glyc 99.3 5.5E-13 1.2E-17 112.0 3.5 120 8-137 1-133 (139)
46 COG3980 spsG Spore coat polysa 99.3 1.1E-09 2.4E-14 97.7 20.2 296 6-438 1-305 (318)
47 PLN02871 UDP-sulfoquinovose:DA 99.3 3.6E-08 7.7E-13 100.2 34.1 129 274-426 263-401 (465)
48 cd03823 GT1_ExpE7_like This fa 99.3 2E-08 4.3E-13 97.9 30.8 137 272-431 189-334 (359)
49 cd04962 GT1_like_5 This family 99.2 4.8E-08 1E-12 96.2 31.0 352 6-463 1-370 (371)
50 cd03817 GT1_UGDG_like This fam 99.2 3E-08 6.4E-13 97.1 28.4 131 272-426 200-344 (374)
51 cd03794 GT1_wbuB_like This fam 99.2 3.7E-08 8.1E-13 96.8 29.1 340 7-431 1-370 (394)
52 cd03800 GT1_Sucrose_synthase T 99.2 1E-07 2.2E-12 94.7 32.4 81 334-426 282-369 (398)
53 cd03801 GT1_YqgM_like This fam 99.2 1.3E-07 2.7E-12 92.1 32.2 338 16-461 14-373 (374)
54 cd03798 GT1_wlbH_like This fam 99.1 2.8E-07 6E-12 89.9 33.3 346 15-463 13-376 (377)
55 cd03808 GT1_cap1E_like This fa 99.1 1.6E-07 3.4E-12 91.2 31.1 314 7-426 1-330 (359)
56 PRK05749 3-deoxy-D-manno-octul 99.1 9.8E-08 2.1E-12 96.0 29.2 104 346-461 314-421 (425)
57 TIGR00236 wecB UDP-N-acetylglu 99.1 9.3E-09 2E-13 101.2 20.7 347 7-459 2-363 (365)
58 cd03820 GT1_amsD_like This fam 99.1 1.7E-07 3.7E-12 90.5 28.5 311 7-435 1-328 (348)
59 cd03816 GT1_ALG1_like This fam 99.1 3.8E-07 8.3E-12 91.2 31.4 123 3-133 1-129 (415)
60 PRK10307 putative glycosyl tra 99.1 1.1E-06 2.4E-11 88.0 33.8 166 272-464 227-408 (412)
61 cd03825 GT1_wcfI_like This fam 99.0 3.8E-07 8.3E-12 89.4 29.2 113 335-463 244-364 (365)
62 cd03818 GT1_ExpC_like This fam 99.0 1.2E-06 2.6E-11 87.2 32.8 81 334-426 280-367 (396)
63 cd03786 GT1_UDP-GlcNAc_2-Epime 99.0 4.5E-09 9.7E-14 103.4 15.0 137 272-432 197-343 (363)
64 cd03795 GT1_like_4 This family 99.0 1.7E-07 3.6E-12 91.6 24.9 133 272-426 189-333 (357)
65 PRK14089 ipid-A-disaccharide s 99.0 5E-08 1.1E-12 93.6 19.4 161 273-459 167-346 (347)
66 TIGR03449 mycothiol_MshA UDP-N 99.0 2.9E-06 6.2E-11 84.7 32.5 114 334-464 282-402 (405)
67 PF04007 DUF354: Protein of un 99.0 4.9E-07 1.1E-11 86.1 24.7 300 6-422 1-307 (335)
68 cd03822 GT1_ecORF704_like This 98.9 4.9E-06 1.1E-10 81.3 32.6 109 334-460 246-364 (366)
69 cd03821 GT1_Bme6_like This fam 98.9 4.8E-06 1E-10 81.3 31.7 79 334-426 261-346 (375)
70 cd03807 GT1_WbnK_like This fam 98.9 9.2E-06 2E-10 79.0 30.9 108 335-460 251-363 (365)
71 cd03799 GT1_amsK_like This is 98.9 5E-06 1.1E-10 81.1 29.0 135 272-426 177-328 (355)
72 cd03796 GT1_PIG-A_like This fa 98.9 5.1E-06 1.1E-10 82.8 29.3 166 272-466 191-370 (398)
73 cd03805 GT1_ALG2_like This fam 98.8 1.2E-05 2.6E-10 79.8 31.3 80 334-426 279-365 (392)
74 COG1519 KdtA 3-deoxy-D-manno-o 98.8 5.7E-06 1.2E-10 79.1 26.2 309 9-433 52-393 (419)
75 cd03819 GT1_WavL_like This fam 98.8 1.7E-05 3.8E-10 77.3 30.9 300 15-424 9-329 (355)
76 cd05844 GT1_like_7 Glycosyltra 98.8 5.8E-06 1.3E-10 81.2 27.3 81 334-426 244-337 (367)
77 PRK09922 UDP-D-galactose:(gluc 98.8 3.1E-06 6.7E-11 83.1 24.9 132 273-426 179-325 (359)
78 TIGR02472 sucr_P_syn_N sucrose 98.8 2.4E-05 5.2E-10 79.0 31.7 111 335-461 317-438 (439)
79 cd03811 GT1_WabH_like This fam 98.7 9.9E-06 2.2E-10 78.2 25.7 135 272-426 187-333 (353)
80 cd04951 GT1_WbdM_like This fam 98.7 1.4E-05 3E-10 78.1 26.6 110 334-461 244-358 (360)
81 PRK01021 lpxB lipid-A-disaccha 98.6 4.8E-05 1E-09 77.0 28.3 195 231-451 381-596 (608)
82 PF02350 Epimerase_2: UDP-N-ac 98.6 4E-07 8.7E-12 88.1 13.3 259 89-435 54-327 (346)
83 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 4.3E-06 9.4E-11 81.8 20.6 320 6-424 1-338 (365)
84 PF02684 LpxB: Lipid-A-disacch 98.6 1E-05 2.2E-10 78.3 22.7 191 231-451 153-365 (373)
85 cd03802 GT1_AviGT4_like This f 98.6 3.8E-05 8.2E-10 74.3 27.1 153 275-460 172-333 (335)
86 cd04955 GT1_like_6 This family 98.6 1.9E-05 4E-10 77.3 25.1 157 276-461 195-362 (363)
87 COG0763 LpxB Lipid A disacchar 98.6 7.8E-06 1.7E-10 77.4 21.0 214 214-462 144-380 (381)
88 TIGR02149 glgA_Coryne glycogen 98.6 7.9E-05 1.7E-09 73.8 29.2 168 273-463 200-386 (388)
89 cd03812 GT1_CapH_like This fam 98.6 3.2E-05 6.9E-10 75.6 25.1 137 272-433 190-338 (358)
90 TIGR03088 stp2 sugar transfera 98.6 0.00024 5.1E-09 70.1 30.5 113 335-463 255-372 (374)
91 cd03809 GT1_mtfB_like This fam 98.5 4.2E-05 9.1E-10 74.6 24.6 89 333-436 251-346 (365)
92 cd03792 GT1_Trehalose_phosphor 98.5 6.1E-05 1.3E-09 74.3 25.3 111 335-463 252-371 (372)
93 TIGR02468 sucrsPsyn_pln sucros 98.5 0.00075 1.6E-08 73.0 34.3 176 262-464 469-671 (1050)
94 COG0381 WecB UDP-N-acetylgluco 98.5 9E-06 1.9E-10 77.2 17.3 355 5-461 3-372 (383)
95 PRK15179 Vi polysaccharide bio 98.4 0.0011 2.4E-08 69.7 32.3 111 334-461 573-691 (694)
96 PRK15427 colanic acid biosynth 98.4 0.00037 8E-09 69.5 27.6 114 334-463 278-405 (406)
97 PLN02275 transferase, transfer 98.4 0.001 2.3E-08 65.5 30.5 75 335-423 286-371 (371)
98 TIGR03087 stp1 sugar transfera 98.4 0.0002 4.4E-09 71.2 25.2 111 333-461 278-394 (397)
99 TIGR02470 sucr_synth sucrose s 98.4 0.0022 4.7E-08 67.9 32.8 127 3-132 253-415 (784)
100 PLN02846 digalactosyldiacylgly 98.4 0.00083 1.8E-08 67.1 28.3 74 338-426 287-364 (462)
101 KOG3349 Predicted glycosyltran 98.4 3.6E-06 7.7E-11 68.0 9.3 116 273-399 3-129 (170)
102 PLN00142 sucrose synthase 98.1 0.0045 9.9E-08 65.6 28.8 108 24-134 319-440 (815)
103 cd03804 GT1_wbaZ_like This fam 98.1 0.001 2.2E-08 65.0 22.9 125 276-426 197-327 (351)
104 cd03791 GT1_Glycogen_synthase_ 98.0 0.0068 1.5E-07 61.9 27.9 165 272-461 294-474 (476)
105 PRK00654 glgA glycogen synthas 98.0 0.013 2.9E-07 59.6 29.6 168 273-464 281-463 (466)
106 PLN02949 transferase, transfer 98.0 0.02 4.4E-07 57.9 30.3 115 334-464 334-457 (463)
107 cd03806 GT1_ALG11_like This fa 98.0 0.0095 2.1E-07 59.7 27.6 80 334-426 304-393 (419)
108 COG5017 Uncharacterized conser 97.9 0.00036 7.8E-09 55.5 11.6 127 276-424 2-141 (161)
109 TIGR02095 glgA glycogen/starch 97.9 0.032 7E-07 56.9 29.3 164 273-463 290-472 (473)
110 cd04950 GT1_like_1 Glycosyltra 97.8 0.038 8.2E-07 54.5 29.6 109 334-463 253-371 (373)
111 PF13844 Glyco_transf_41: Glyc 97.8 0.00036 7.7E-09 69.1 13.7 173 271-463 282-466 (468)
112 PLN02501 digalactosyldiacylgly 97.7 0.035 7.5E-07 57.6 25.2 100 337-461 603-707 (794)
113 cd04949 GT1_gtfA_like This fam 97.7 0.0092 2E-07 58.7 21.1 98 334-440 260-363 (372)
114 cd04946 GT1_AmsK_like This fam 97.6 0.0013 2.8E-08 65.7 14.8 165 272-458 228-406 (407)
115 cd03813 GT1_like_3 This family 97.6 0.023 5E-07 58.0 23.8 86 334-431 353-447 (475)
116 TIGR02918 accessory Sec system 97.5 0.038 8.2E-07 56.5 23.5 164 273-463 318-499 (500)
117 PF00534 Glycos_transf_1: Glyc 97.5 0.0015 3.3E-08 56.4 11.5 143 271-432 12-164 (172)
118 PRK10125 putative glycosyl tra 97.5 0.039 8.4E-07 55.0 22.4 114 276-419 243-365 (405)
119 PLN02316 synthase/transferase 97.4 0.29 6.4E-06 53.7 33.5 107 347-463 915-1033(1036)
120 PRK15484 lipopolysaccharide 1, 97.4 0.016 3.4E-07 57.4 19.0 113 335-463 257-377 (380)
121 TIGR02193 heptsyl_trn_I lipopo 97.1 0.03 6.5E-07 53.9 17.1 105 7-127 1-108 (319)
122 PRK09814 beta-1,6-galactofuran 97.0 0.0052 1.1E-07 59.6 10.4 109 334-459 206-331 (333)
123 PRK15490 Vi polysaccharide bio 97.0 0.43 9.3E-06 48.8 23.9 113 334-462 454-574 (578)
124 PF13692 Glyco_trans_1_4: Glyc 96.9 0.0037 8.1E-08 51.5 7.7 127 275-425 3-135 (135)
125 COG1817 Uncharacterized protei 96.9 0.11 2.4E-06 48.1 16.9 102 15-134 9-113 (346)
126 PF13477 Glyco_trans_4_2: Glyc 96.8 0.012 2.6E-07 48.8 10.1 102 7-132 1-106 (139)
127 PRK10017 colanic acid biosynth 96.8 0.053 1.2E-06 54.0 16.0 182 263-462 224-423 (426)
128 cd01635 Glycosyltransferase_GT 96.8 0.27 5.9E-06 43.8 19.4 69 15-133 12-83 (229)
129 PRK10422 lipopolysaccharide co 96.7 0.13 2.8E-06 50.2 17.4 110 1-130 1-113 (352)
130 PF06722 DUF1205: Protein of u 96.5 0.0037 8.1E-08 48.0 4.2 55 259-313 26-85 (97)
131 TIGR02201 heptsyl_trn_III lipo 96.3 0.62 1.3E-05 45.3 19.6 105 7-130 1-108 (344)
132 PF13579 Glyco_trans_4_4: Glyc 96.3 0.0089 1.9E-07 50.4 5.8 95 21-133 6-104 (160)
133 COG0859 RfaF ADP-heptose:LPS h 96.2 1.2 2.5E-05 43.2 20.5 105 5-130 1-107 (334)
134 PRK10916 ADP-heptose:LPS hepto 96.0 1.7 3.7E-05 42.3 20.9 103 6-130 1-106 (348)
135 PHA01633 putative glycosyl tra 95.9 0.48 1E-05 45.6 16.3 85 334-425 200-307 (335)
136 COG3914 Spy Predicted O-linked 95.7 0.085 1.8E-06 52.9 10.1 133 271-419 427-572 (620)
137 KOG4626 O-linked N-acetylgluco 95.6 0.17 3.7E-06 51.1 11.8 123 271-403 756-888 (966)
138 PF13524 Glyco_trans_1_2: Glyc 95.4 0.14 3.1E-06 38.9 8.7 83 360-458 9-91 (92)
139 TIGR02195 heptsyl_trn_II lipop 95.4 2.5 5.4E-05 40.8 19.4 102 7-130 1-105 (334)
140 cd03789 GT1_LPS_heptosyltransf 95.2 2.4 5.1E-05 39.8 18.1 102 7-130 1-105 (279)
141 PRK14098 glycogen synthase; Pr 95.0 0.43 9.4E-06 48.8 13.1 168 273-464 306-486 (489)
142 COG1618 Predicted nucleotide k 94.7 0.14 3E-06 42.9 6.9 104 1-115 1-111 (179)
143 PF01975 SurE: Survival protei 94.5 0.074 1.6E-06 46.8 5.3 121 6-135 1-135 (196)
144 PHA01630 putative group 1 glyc 94.2 2.5 5.5E-05 40.8 15.8 110 341-462 196-329 (331)
145 PF06258 Mito_fiss_Elm1: Mitoc 93.3 7.5 0.00016 37.1 16.9 57 344-403 221-281 (311)
146 TIGR03713 acc_sec_asp1 accesso 93.2 1.1 2.4E-05 46.0 12.0 89 335-440 409-506 (519)
147 PF12000 Glyco_trans_4_3: Gkyc 93.2 1.1 2.3E-05 38.5 9.9 92 31-134 1-97 (171)
148 PF13439 Glyco_transf_4: Glyco 92.9 0.6 1.3E-05 39.7 8.3 101 15-136 11-112 (177)
149 PF08660 Alg14: Oligosaccharid 90.7 2.9 6.4E-05 35.9 9.9 117 10-134 2-130 (170)
150 KOG2941 Beta-1,4-mannosyltrans 90.6 16 0.00035 34.9 28.4 125 3-137 10-141 (444)
151 PLN02939 transferase, transfer 90.0 8.7 0.00019 42.1 14.5 83 335-424 837-930 (977)
152 COG0496 SurE Predicted acid ph 89.7 1.8 3.9E-05 39.4 8.0 98 20-134 14-126 (252)
153 TIGR00715 precor6x_red precorr 89.2 3.4 7.4E-05 38.1 9.7 91 6-131 1-98 (256)
154 PRK13933 stationary phase surv 87.9 6 0.00013 36.4 10.2 36 6-46 1-39 (253)
155 PRK08057 cobalt-precorrin-6x r 87.0 3.4 7.4E-05 37.9 8.1 91 5-131 2-98 (248)
156 smart00851 MGS MGS-like domain 86.9 4.6 9.9E-05 30.4 7.6 79 22-129 2-89 (90)
157 PF04464 Glyphos_transf: CDP-G 86.8 0.62 1.4E-05 45.8 3.5 115 334-458 251-368 (369)
158 TIGR02400 trehalose_OtsA alpha 86.6 8.5 0.00018 39.0 11.6 102 340-461 341-454 (456)
159 COG0003 ArsA Predicted ATPase 86.0 11 0.00024 36.0 11.3 43 5-47 1-44 (322)
160 PRK10964 ADP-heptose:LPS hepto 85.7 5.1 0.00011 38.5 9.2 46 6-51 1-48 (322)
161 TIGR02919 accessory Sec system 85.7 17 0.00037 36.5 13.0 139 272-440 282-426 (438)
162 COG0438 RfaG Glycosyltransfera 85.5 32 0.00069 32.2 16.9 114 334-464 256-377 (381)
163 PRK12342 hypothetical protein; 85.3 9.8 0.00021 35.0 10.2 99 18-134 32-145 (254)
164 PRK13935 stationary phase surv 85.2 11 0.00023 34.7 10.3 39 7-47 2-40 (253)
165 cd01424 MGS_CPS_II Methylglyox 84.9 5.6 0.00012 31.3 7.5 83 18-130 11-100 (110)
166 PF01012 ETF: Electron transfe 84.9 3.7 7.9E-05 35.0 7.0 111 7-134 1-123 (164)
167 PF10093 DUF2331: Uncharacteri 84.0 44 0.00096 32.6 17.9 34 9-42 4-38 (374)
168 COG4370 Uncharacterized protei 83.8 7.5 0.00016 36.3 8.5 108 339-464 299-410 (412)
169 cd03788 GT1_TPS Trehalose-6-Ph 83.6 6.5 0.00014 39.9 9.2 102 339-460 345-458 (460)
170 PF09314 DUF1972: Domain of un 83.5 29 0.00064 30.2 12.5 59 5-68 1-64 (185)
171 PRK14099 glycogen synthase; Pr 83.4 17 0.00037 37.2 12.2 38 5-42 3-46 (485)
172 PF04413 Glycos_transf_N: 3-De 82.9 3.1 6.7E-05 36.4 5.7 101 7-134 22-127 (186)
173 COG1703 ArgK Putative periplas 82.7 8.6 0.00019 36.0 8.6 111 6-131 51-172 (323)
174 COG0052 RpsB Ribosomal protein 82.4 20 0.00044 32.4 10.5 33 104-136 156-190 (252)
175 PRK05647 purN phosphoribosylgl 82.2 13 0.00027 33.0 9.3 108 5-134 1-111 (200)
176 COG3660 Predicted nucleoside-d 82.2 41 0.00089 30.9 17.6 78 294-379 189-271 (329)
177 PF02374 ArsA_ATPase: Anion-tr 81.1 5.7 0.00012 37.8 7.2 42 6-47 1-43 (305)
178 cd02067 B12-binding B12 bindin 81.0 3 6.6E-05 33.3 4.7 42 7-48 1-42 (119)
179 cd00532 MGS-like MGS-like doma 81.0 7.9 0.00017 30.6 7.0 84 18-130 10-104 (112)
180 PRK06718 precorrin-2 dehydroge 80.3 18 0.00039 32.0 9.7 146 271-442 9-164 (202)
181 PF02441 Flavoprotein: Flavopr 80.2 1.9 4E-05 35.2 3.2 45 6-51 1-45 (129)
182 COG4394 Uncharacterized protei 79.6 49 0.0011 30.8 12.0 30 13-42 11-41 (370)
183 PF02571 CbiJ: Precorrin-6x re 79.4 8.4 0.00018 35.4 7.5 93 6-131 1-99 (249)
184 PRK03359 putative electron tra 79.0 22 0.00048 32.8 10.1 100 17-134 32-148 (256)
185 PF00551 Formyl_trans_N: Formy 78.6 33 0.00071 29.7 10.7 106 6-134 1-110 (181)
186 PRK13931 stationary phase surv 78.6 20 0.00044 33.1 9.7 96 22-133 16-129 (261)
187 PRK08305 spoVFB dipicolinate s 78.2 3.2 6.9E-05 36.5 4.1 46 1-46 1-46 (196)
188 PF05159 Capsule_synth: Capsul 77.6 20 0.00043 33.4 9.7 42 337-381 185-226 (269)
189 PRK05986 cob(I)alamin adenolsy 77.2 41 0.00089 29.4 10.7 97 6-115 23-126 (191)
190 PRK13934 stationary phase surv 77.2 33 0.00071 31.8 10.5 38 7-46 2-39 (266)
191 cd01425 RPS2 Ribosomal protein 77.1 35 0.00075 30.0 10.5 109 20-135 43-160 (193)
192 cd00561 CobA_CobO_BtuR ATP:cor 76.8 45 0.00098 28.3 10.9 98 6-115 3-106 (159)
193 TIGR00087 surE 5'/3'-nucleotid 76.3 23 0.0005 32.4 9.3 94 22-133 16-128 (244)
194 COG4088 Predicted nucleotide k 76.3 43 0.00094 29.7 10.3 109 5-141 1-116 (261)
195 cd00550 ArsA_ATPase Oxyanion-t 76.2 25 0.00053 32.5 9.7 44 7-51 1-45 (254)
196 COG1748 LYS9 Saccharopine dehy 76.1 15 0.00033 36.0 8.5 99 5-137 1-104 (389)
197 PRK00346 surE 5'(3')-nucleotid 76.0 25 0.00055 32.3 9.5 108 7-133 2-124 (250)
198 cd01423 MGS_CPS_I_III Methylgl 76.0 22 0.00047 28.2 8.2 87 18-130 11-106 (116)
199 PF06925 MGDG_synth: Monogalac 75.6 9 0.00019 32.8 6.3 48 85-134 72-125 (169)
200 PF02142 MGS: MGS-like domain 75.2 3 6.4E-05 31.9 2.8 83 22-129 2-94 (95)
201 TIGR01285 nifN nitrogenase mol 75.1 27 0.00058 35.2 10.3 87 5-131 311-397 (432)
202 PRK13789 phosphoribosylamine-- 74.9 9.3 0.0002 38.3 7.0 93 3-130 2-97 (426)
203 PRK06849 hypothetical protein; 74.9 20 0.00042 35.5 9.3 80 4-111 3-83 (389)
204 PLN03063 alpha,alpha-trehalose 74.4 16 0.00036 39.8 9.2 101 346-465 370-479 (797)
205 cd01985 ETF The electron trans 74.3 38 0.00083 29.2 10.0 44 89-134 78-124 (181)
206 PF02951 GSH-S_N: Prokaryotic 74.3 5.6 0.00012 31.8 4.2 38 6-43 1-41 (119)
207 cd01974 Nitrogenase_MoFe_beta 74.2 20 0.00044 36.1 9.3 95 5-131 303-401 (435)
208 PRK13932 stationary phase surv 74.2 18 0.0004 33.3 8.1 115 6-133 6-133 (257)
209 PRK07313 phosphopantothenoylcy 74.1 3.4 7.5E-05 35.9 3.3 44 5-49 1-44 (182)
210 PRK12311 rpsB 30S ribosomal pr 73.6 47 0.001 31.8 10.9 33 104-136 152-186 (326)
211 TIGR01470 cysG_Nterm siroheme 73.6 28 0.00061 30.9 9.0 149 271-442 8-164 (205)
212 PRK11199 tyrA bifunctional cho 73.3 22 0.00049 34.9 9.2 37 2-43 95-132 (374)
213 PRK13195 pyrrolidone-carboxyla 73.2 11 0.00024 33.8 6.3 27 5-31 1-29 (222)
214 cd07039 TPP_PYR_POX Pyrimidine 72.8 30 0.00065 29.4 8.8 27 354-380 64-96 (164)
215 TIGR02015 BchY chlorophyllide 72.7 23 0.00051 35.4 9.2 90 6-131 286-379 (422)
216 PRK02261 methylaspartate mutas 72.6 9.2 0.0002 31.5 5.3 45 6-50 4-48 (137)
217 PRK14098 glycogen synthase; Pr 72.4 6.2 0.00013 40.4 5.2 42 1-42 1-48 (489)
218 PRK13982 bifunctional SbtC-lik 72.2 18 0.00038 36.7 8.1 40 5-44 256-307 (475)
219 PRK04328 hypothetical protein; 71.8 67 0.0015 29.5 11.5 109 3-114 21-138 (249)
220 PF02844 GARS_N: Phosphoribosy 71.2 17 0.00037 28.0 6.1 88 6-130 1-91 (100)
221 TIGR01283 nifE nitrogenase mol 70.9 33 0.00072 34.8 10.0 90 5-131 326-419 (456)
222 PRK05234 mgsA methylglyoxal sy 70.4 49 0.0011 27.4 9.1 99 3-131 2-112 (142)
223 PLN00016 RNA-binding protein; 70.0 44 0.00095 32.8 10.5 37 5-43 52-90 (378)
224 COG2910 Putative NADH-flavin r 69.9 5.4 0.00012 34.4 3.4 35 6-44 1-35 (211)
225 PRK02155 ppnK NAD(+)/NADH kina 69.5 26 0.00056 33.1 8.2 55 350-426 62-120 (291)
226 PRK02797 4-alpha-L-fucosyltran 68.9 49 0.0011 31.3 9.6 80 335-422 206-291 (322)
227 cd01965 Nitrogenase_MoFe_beta_ 68.7 30 0.00066 34.7 9.1 35 92-131 361-395 (428)
228 PRK06029 3-octaprenyl-4-hydrox 68.6 5.6 0.00012 34.7 3.3 45 5-50 1-46 (185)
229 TIGR02655 circ_KaiC circadian 68.3 76 0.0017 32.5 12.0 96 3-115 261-364 (484)
230 COG0552 FtsY Signal recognitio 67.9 47 0.001 31.7 9.4 41 8-48 142-182 (340)
231 cd01121 Sms Sms (bacterial rad 67.8 67 0.0015 31.5 11.0 43 6-48 83-125 (372)
232 PRK06988 putative formyltransf 67.5 31 0.00067 33.0 8.5 34 5-43 2-35 (312)
233 PF12146 Hydrolase_4: Putative 67.5 14 0.0003 27.1 4.8 35 6-40 16-50 (79)
234 COG1484 DnaC DNA replication p 67.2 6.9 0.00015 36.1 3.8 47 5-51 105-151 (254)
235 PRK05595 replicative DNA helic 67.1 47 0.001 33.5 10.2 40 8-47 204-244 (444)
236 KOG0780 Signal recognition par 66.9 26 0.00056 34.1 7.4 42 8-49 104-145 (483)
237 PF04127 DFP: DNA / pantothena 66.9 5.5 0.00012 34.8 2.9 39 5-43 3-53 (185)
238 PRK10867 signal recognition pa 66.5 30 0.00066 34.7 8.4 42 6-47 100-143 (433)
239 PF02310 B12-binding: B12 bind 66.4 17 0.00037 28.8 5.7 42 7-48 2-43 (121)
240 TIGR00347 bioD dethiobiotin sy 66.1 32 0.00069 29.1 7.6 27 13-39 6-32 (166)
241 cd01968 Nitrogenase_NifE_I Nit 66.1 45 0.00097 33.3 9.7 35 92-131 346-380 (410)
242 TIGR00708 cobA cob(I)alamin ad 66.1 87 0.0019 27.0 10.1 96 6-115 6-108 (173)
243 PRK14501 putative bifunctional 65.5 28 0.00061 37.7 8.7 112 338-465 345-464 (726)
244 PRK14478 nitrogenase molybdenu 65.3 40 0.00086 34.4 9.2 89 5-130 324-416 (475)
245 PRK13196 pyrrolidone-carboxyla 65.3 17 0.00036 32.5 5.8 68 5-113 1-70 (211)
246 PF00731 AIRC: AIR carboxylase 65.0 83 0.0018 26.4 9.4 139 274-442 1-148 (150)
247 PF07429 Glyco_transf_56: 4-al 64.9 1.4E+02 0.003 28.9 12.8 84 333-424 243-332 (360)
248 PF03808 Glyco_tran_WecB: Glyc 64.7 68 0.0015 27.5 9.3 98 22-139 37-139 (172)
249 COG2109 BtuR ATP:corrinoid ade 63.6 78 0.0017 27.6 9.1 97 8-115 31-133 (198)
250 cd01980 Chlide_reductase_Y Chl 63.5 45 0.00097 33.4 9.1 91 6-132 281-375 (416)
251 PF08433 KTI12: Chromatin asso 63.3 55 0.0012 30.5 9.1 103 5-137 1-109 (270)
252 PRK04885 ppnK inorganic polyph 62.8 13 0.00028 34.5 4.8 51 356-426 38-94 (265)
253 cd01715 ETF_alpha The electron 62.5 97 0.0021 26.3 11.0 44 89-134 70-116 (168)
254 PRK01077 cobyrinic acid a,c-di 62.4 42 0.00091 34.0 8.8 38 5-42 3-41 (451)
255 PRK11823 DNA repair protein Ra 61.8 85 0.0018 31.7 10.7 44 5-48 80-123 (446)
256 TIGR02195 heptsyl_trn_II lipop 61.7 96 0.0021 29.8 10.9 99 6-133 175-278 (334)
257 PRK07206 hypothetical protein; 61.6 30 0.00065 34.5 7.6 93 5-128 2-96 (416)
258 COG1066 Sms Predicted ATP-depe 61.2 42 0.00091 33.1 7.9 85 6-114 94-178 (456)
259 KOG3062 RNA polymerase II elon 60.9 63 0.0014 29.1 8.2 37 5-41 1-38 (281)
260 COG2086 FixA Electron transfer 60.4 83 0.0018 29.1 9.4 100 17-134 33-147 (260)
261 COG0541 Ffh Signal recognition 60.2 38 0.00082 33.6 7.5 43 6-48 101-143 (451)
262 cd03793 GT1_Glycogen_synthase_ 60.0 38 0.00083 35.1 7.8 79 345-426 468-553 (590)
263 PRK14077 pnk inorganic polypho 59.6 16 0.00034 34.5 4.8 56 349-426 62-121 (287)
264 TIGR00460 fmt methionyl-tRNA f 59.3 54 0.0012 31.4 8.5 32 6-42 1-32 (313)
265 PRK14477 bifunctional nitrogen 59.2 63 0.0014 36.1 10.0 91 5-132 320-414 (917)
266 TIGR02370 pyl_corrinoid methyl 58.9 24 0.00051 31.2 5.6 46 5-50 84-129 (197)
267 COG0287 TyrA Prephenate dehydr 58.8 79 0.0017 29.6 9.3 43 4-51 2-44 (279)
268 cd02070 corrinoid_protein_B12- 58.6 22 0.00047 31.5 5.3 45 5-49 82-126 (201)
269 TIGR00416 sms DNA repair prote 57.6 1E+02 0.0022 31.3 10.4 105 5-132 94-219 (454)
270 PRK08760 replicative DNA helic 57.3 62 0.0013 33.0 9.0 40 8-47 232-272 (476)
271 TIGR00959 ffh signal recogniti 56.6 51 0.0011 33.0 8.0 42 6-47 99-142 (428)
272 PLN02470 acetolactate synthase 56.6 41 0.0009 35.4 7.9 91 279-380 2-109 (585)
273 cd03466 Nitrogenase_NifN_2 Nit 56.6 58 0.0013 32.7 8.6 35 92-131 362-396 (429)
274 cd02071 MM_CoA_mut_B12_BD meth 56.4 25 0.00053 28.2 4.9 42 7-48 1-42 (122)
275 cd01977 Nitrogenase_VFe_alpha 56.4 73 0.0016 31.8 9.2 93 5-131 288-382 (415)
276 COG0771 MurD UDP-N-acetylmuram 56.3 37 0.00081 34.1 7.0 36 5-45 7-42 (448)
277 cd07035 TPP_PYR_POX_like Pyrim 56.3 89 0.0019 26.0 8.6 26 356-381 62-93 (155)
278 cd03115 SRP The signal recogni 56.2 1.3E+02 0.0027 25.6 9.7 39 8-46 3-41 (173)
279 cd01124 KaiC KaiC is a circadi 56.0 38 0.00081 29.2 6.4 42 8-49 2-43 (187)
280 COG0801 FolK 7,8-dihydro-6-hyd 55.8 37 0.0008 28.7 5.8 35 275-309 3-37 (160)
281 PRK01231 ppnK inorganic polyph 55.7 59 0.0013 30.8 7.9 54 351-426 62-119 (295)
282 cd00984 DnaB_C DnaB helicase C 55.5 1.6E+02 0.0034 26.6 12.0 43 7-49 15-58 (242)
283 PRK01911 ppnK inorganic polyph 55.3 19 0.00042 34.0 4.6 58 347-426 60-121 (292)
284 PRK07773 replicative DNA helic 55.3 68 0.0015 35.7 9.5 119 8-134 220-376 (886)
285 PRK06249 2-dehydropantoate 2-r 55.1 23 0.0005 33.8 5.3 44 1-50 1-44 (313)
286 PRK09165 replicative DNA helic 55.1 1E+02 0.0022 31.7 10.1 41 8-48 220-275 (497)
287 PRK05920 aromatic acid decarbo 55.0 14 0.00031 32.7 3.4 45 5-50 3-47 (204)
288 TIGR01425 SRP54_euk signal rec 55.0 68 0.0015 32.1 8.5 41 6-46 100-141 (429)
289 COG2099 CobK Precorrin-6x redu 54.8 84 0.0018 28.8 8.2 92 5-131 2-99 (257)
290 COG1763 MobB Molybdopterin-gua 54.3 25 0.00055 29.8 4.7 39 5-43 1-40 (161)
291 TIGR03878 thermo_KaiC_2 KaiC d 54.2 1.8E+02 0.0039 26.8 11.4 41 5-45 36-76 (259)
292 cd01422 MGS Methylglyoxal synt 54.2 95 0.0021 24.6 7.8 86 17-131 9-107 (115)
293 COG1698 Uncharacterized protei 54.1 90 0.002 23.3 6.9 55 414-471 17-74 (93)
294 PRK05632 phosphate acetyltrans 53.8 1.1E+02 0.0024 33.0 10.5 104 6-135 3-116 (684)
295 PRK02649 ppnK inorganic polyph 53.5 22 0.00047 33.8 4.6 55 350-426 67-125 (305)
296 PRK13197 pyrrolidone-carboxyla 53.5 37 0.00081 30.4 5.9 27 5-31 1-29 (215)
297 TIGR02852 spore_dpaB dipicolin 53.2 16 0.00035 31.9 3.5 40 6-45 1-40 (187)
298 COG0859 RfaF ADP-heptose:LPS h 53.0 56 0.0012 31.5 7.6 100 6-135 176-280 (334)
299 TIGR01862 N2-ase-Ialpha nitrog 52.4 1E+02 0.0022 31.2 9.5 34 93-131 378-411 (443)
300 PRK06732 phosphopantothenate-- 52.3 22 0.00048 32.2 4.4 37 6-42 1-49 (229)
301 PRK06321 replicative DNA helic 52.3 1.8E+02 0.0039 29.6 11.3 40 8-47 229-269 (472)
302 PRK05562 precorrin-2 dehydroge 52.1 91 0.002 28.1 8.1 150 265-441 19-178 (223)
303 TIGR01286 nifK nitrogenase mol 52.0 86 0.0019 32.3 9.0 34 93-131 428-461 (515)
304 TIGR03880 KaiC_arch_3 KaiC dom 51.6 68 0.0015 28.7 7.5 102 4-114 15-117 (224)
305 PRK01710 murD UDP-N-acetylmura 51.6 86 0.0019 31.8 9.0 33 5-42 14-46 (458)
306 PRK12815 carB carbamoyl phosph 51.3 1.2E+02 0.0027 34.5 10.9 39 5-43 7-51 (1068)
307 cd02069 methionine_synthase_B1 51.2 37 0.00081 30.4 5.6 46 4-49 87-132 (213)
308 PRK06067 flagellar accessory p 50.7 58 0.0013 29.4 7.0 46 3-48 23-68 (234)
309 PRK11519 tyrosine kinase; Prov 50.5 1.3E+02 0.0027 32.7 10.4 39 5-43 525-565 (719)
310 PRK09620 hypothetical protein; 50.3 30 0.00065 31.4 4.9 38 5-42 3-52 (229)
311 PRK02231 ppnK inorganic polyph 50.3 20 0.00043 33.5 3.7 60 344-425 35-98 (272)
312 PRK00090 bioD dithiobiotin syn 49.9 1.2E+02 0.0027 26.9 9.0 33 8-40 2-35 (222)
313 PRK06395 phosphoribosylamine-- 49.8 90 0.0019 31.5 8.7 91 5-131 2-95 (435)
314 PRK13768 GTPase; Provisional 49.8 1.3E+02 0.0027 27.8 9.0 40 5-44 1-41 (253)
315 PRK03378 ppnK inorganic polyph 49.8 26 0.00055 33.1 4.5 58 347-426 59-120 (292)
316 PRK04539 ppnK inorganic polyph 49.6 24 0.00052 33.4 4.3 58 347-426 64-125 (296)
317 TIGR01861 ANFD nitrogenase iro 49.4 1.3E+02 0.0028 31.1 9.8 93 5-131 328-422 (513)
318 TIGR00639 PurN phosphoribosylg 49.2 1.8E+02 0.004 25.4 9.9 103 6-134 1-110 (190)
319 TIGR00665 DnaB replicative DNA 49.1 1.9E+02 0.0041 29.1 11.0 41 8-48 198-239 (434)
320 PRK06526 transposase; Provisio 49.1 20 0.00044 33.1 3.6 38 5-42 98-135 (254)
321 COG2874 FlaH Predicted ATPases 48.9 2E+02 0.0044 25.8 9.7 99 5-115 28-134 (235)
322 TIGR01011 rpsB_bact ribosomal 48.9 2.1E+02 0.0045 25.9 10.0 33 104-136 155-189 (225)
323 PRK05299 rpsB 30S ribosomal pr 48.6 2.1E+02 0.0045 26.5 10.1 33 104-136 157-191 (258)
324 PRK11889 flhF flagellar biosyn 48.6 86 0.0019 31.1 7.8 40 6-45 242-281 (436)
325 PF02571 CbiJ: Precorrin-6x re 48.5 99 0.0022 28.4 8.0 99 22-131 118-225 (249)
326 PF00448 SRP54: SRP54-type pro 48.4 1.5E+02 0.0032 26.1 8.9 39 7-45 2-41 (196)
327 PRK12475 thiamine/molybdopteri 48.4 1E+02 0.0022 29.9 8.5 33 5-42 24-57 (338)
328 PRK03372 ppnK inorganic polyph 48.4 25 0.00055 33.4 4.2 55 350-426 71-129 (306)
329 PRK05636 replicative DNA helic 48.3 95 0.0021 32.0 8.6 40 8-47 268-308 (505)
330 PRK13886 conjugal transfer pro 48.2 2.2E+02 0.0048 26.0 10.7 42 5-46 1-44 (241)
331 COG2894 MinD Septum formation 47.8 35 0.00075 30.6 4.6 39 5-43 1-41 (272)
332 TIGR00725 conserved hypothetic 47.5 68 0.0015 27.1 6.4 100 260-381 20-123 (159)
333 PRK08591 acetyl-CoA carboxylas 47.5 1.7E+02 0.0036 29.6 10.4 97 5-131 2-105 (451)
334 PRK08506 replicative DNA helic 47.3 2E+02 0.0044 29.3 10.8 41 8-48 195-235 (472)
335 TIGR03877 thermo_KaiC_1 KaiC d 47.2 1.6E+02 0.0035 26.6 9.3 47 3-49 19-65 (237)
336 PLN02735 carbamoyl-phosphate s 47.1 1.4E+02 0.0031 34.1 10.5 40 4-43 22-67 (1102)
337 PF09001 DUF1890: Domain of un 46.7 16 0.00035 29.7 2.2 35 17-51 11-45 (139)
338 PRK00005 fmt methionyl-tRNA fo 46.2 1.7E+02 0.0037 27.8 9.6 32 6-42 1-32 (309)
339 PRK10916 ADP-heptose:LPS hepto 46.1 85 0.0019 30.4 7.7 101 6-133 181-288 (348)
340 CHL00067 rps2 ribosomal protei 46.0 2.3E+02 0.005 25.7 10.9 33 104-136 161-195 (230)
341 PF13460 NAD_binding_10: NADH( 45.9 1.6E+02 0.0035 24.9 8.9 87 13-134 4-98 (183)
342 PF08323 Glyco_transf_5: Starc 45.9 28 0.0006 31.9 4.0 26 17-42 17-42 (245)
343 PRK12767 carbamoyl phosphate s 45.6 97 0.0021 29.5 8.0 33 5-43 1-35 (326)
344 COG3340 PepE Peptidase E [Amin 45.5 1.3E+02 0.0028 26.8 7.7 45 261-306 22-66 (224)
345 cd03789 GT1_LPS_heptosyltransf 45.4 1.1E+02 0.0024 28.5 8.1 87 20-134 140-226 (279)
346 PRK06270 homoserine dehydrogen 45.1 2E+02 0.0044 27.8 10.1 59 344-403 80-150 (341)
347 TIGR00421 ubiX_pad polyprenyl 44.2 22 0.00048 30.9 2.9 42 7-49 1-42 (181)
348 PF05225 HTH_psq: helix-turn-h 43.9 43 0.00092 21.5 3.5 26 411-436 1-26 (45)
349 cd07038 TPP_PYR_PDC_IPDC_like 43.8 26 0.00056 29.8 3.3 25 356-380 62-92 (162)
350 PF01075 Glyco_transf_9: Glyco 43.4 52 0.0011 29.9 5.5 100 271-379 103-208 (247)
351 PF14336 DUF4392: Domain of un 42.8 38 0.00083 31.9 4.5 48 3-51 38-94 (291)
352 TIGR00750 lao LAO/AO transport 42.8 1.2E+02 0.0027 28.6 8.1 40 5-44 34-73 (300)
353 PRK05784 phosphoribosylamine-- 42.7 1.3E+02 0.0029 30.7 8.7 94 6-131 1-99 (486)
354 PRK00784 cobyric acid synthase 42.5 3.4E+02 0.0074 27.8 11.7 37 5-41 2-39 (488)
355 PRK09841 cryptic autophosphory 42.5 1.5E+02 0.0032 32.3 9.4 40 5-44 530-571 (726)
356 PF06506 PrpR_N: Propionate ca 42.5 24 0.00053 30.4 2.9 30 350-382 33-62 (176)
357 TIGR02113 coaC_strep phosphopa 42.3 24 0.00051 30.6 2.8 43 6-49 1-43 (177)
358 COG0223 Fmt Methionyl-tRNA for 42.2 68 0.0015 30.4 6.0 36 5-45 1-36 (307)
359 COG2085 Predicted dinucleotide 42.2 43 0.00093 29.7 4.3 35 5-44 1-35 (211)
360 PLN02935 Bifunctional NADH kin 42.1 39 0.00084 34.3 4.5 54 350-426 261-319 (508)
361 TIGR00173 menD 2-succinyl-5-en 41.9 1.6E+02 0.0035 29.5 9.2 66 354-424 64-153 (432)
362 PRK05294 carB carbamoyl phosph 41.8 1.3E+02 0.0029 34.3 9.3 40 4-43 6-51 (1066)
363 PF07355 GRDB: Glycine/sarcosi 41.6 50 0.0011 31.7 5.0 41 89-131 67-117 (349)
364 PRK10637 cysG siroheme synthas 41.6 1.3E+02 0.0029 30.5 8.5 150 266-442 7-167 (457)
365 cd01018 ZntC Metal binding pro 41.6 2.3E+02 0.005 26.2 9.5 42 92-135 207-250 (266)
366 TIGR00345 arsA arsenite-activa 41.6 1.7E+02 0.0038 27.4 8.8 23 23-45 3-25 (284)
367 PRK08155 acetolactate synthase 41.6 2E+02 0.0043 30.1 10.1 25 356-380 79-109 (564)
368 PF06564 YhjQ: YhjQ protein; 41.5 49 0.0011 30.2 4.8 38 5-42 1-39 (243)
369 TIGR02201 heptsyl_trn_III lipo 41.5 2.8E+02 0.006 26.7 10.6 99 7-133 183-287 (344)
370 PRK10416 signal recognition pa 41.5 2.7E+02 0.0058 26.7 10.1 39 7-45 116-154 (318)
371 PRK06276 acetolactate synthase 41.3 1.1E+02 0.0023 32.3 8.1 66 354-425 64-148 (586)
372 cd07037 TPP_PYR_MenD Pyrimidin 41.2 37 0.0008 28.9 3.8 25 356-380 63-93 (162)
373 PRK03501 ppnK inorganic polyph 41.2 46 0.00099 30.9 4.6 52 356-426 42-98 (264)
374 PRK06731 flhF flagellar biosyn 40.7 2.4E+02 0.0051 26.4 9.3 41 5-45 75-115 (270)
375 PF05368 NmrA: NmrA-like famil 40.7 1.8E+02 0.0039 26.0 8.6 91 14-135 5-104 (233)
376 COG1435 Tdk Thymidine kinase [ 40.5 2.6E+02 0.0056 24.7 9.0 105 4-131 2-116 (201)
377 PLN02929 NADH kinase 40.3 41 0.00088 31.8 4.2 63 356-426 67-138 (301)
378 PRK01185 ppnK inorganic polyph 40.2 42 0.0009 31.3 4.3 54 351-426 52-106 (271)
379 PF01210 NAD_Gly3P_dh_N: NAD-d 40.0 19 0.00042 30.3 1.9 32 7-43 1-32 (157)
380 TIGR03499 FlhF flagellar biosy 39.9 1.3E+02 0.0029 28.1 7.7 39 7-45 196-236 (282)
381 PRK07710 acetolactate synthase 39.7 94 0.002 32.6 7.3 27 354-380 79-111 (571)
382 KOG0832 Mitochondrial/chloropl 39.6 32 0.0007 30.7 3.1 111 17-136 92-207 (251)
383 PRK04930 glutathione-regulated 39.5 63 0.0014 28.2 5.0 38 1-39 1-39 (184)
384 PRK09302 circadian clock prote 39.4 58 0.0013 33.6 5.6 48 3-50 271-318 (509)
385 KOG0853 Glycosyltransferase [C 39.3 18 0.0004 36.5 1.8 62 364-434 380-441 (495)
386 TIGR02699 archaeo_AfpA archaeo 39.3 37 0.0008 29.3 3.5 42 7-49 1-44 (174)
387 PRK04020 rps2P 30S ribosomal p 39.3 56 0.0012 29.0 4.7 33 104-136 114-148 (204)
388 PRK00885 phosphoribosylamine-- 39.1 64 0.0014 32.2 5.8 87 6-130 1-91 (420)
389 PRK06756 flavodoxin; Provision 38.9 1.9E+02 0.0041 23.8 7.8 38 5-42 1-39 (148)
390 COG0467 RAD55 RecA-superfamily 38.8 79 0.0017 29.1 6.0 107 3-115 21-135 (260)
391 TIGR01501 MthylAspMutase methy 38.8 79 0.0017 25.9 5.2 44 5-48 1-44 (134)
392 PF06180 CbiK: Cobalt chelatas 38.7 42 0.00092 31.1 4.0 40 273-312 1-43 (262)
393 cd01017 AdcA Metal binding pro 38.6 3E+02 0.0065 25.7 9.9 41 92-134 210-252 (282)
394 cd01981 Pchlide_reductase_B Pc 38.5 45 0.00097 33.5 4.5 35 93-132 361-395 (430)
395 PRK05114 hypothetical protein; 38.5 1.2E+02 0.0026 20.5 4.9 38 428-469 12-49 (59)
396 PRK01175 phosphoribosylformylg 38.4 3.3E+02 0.0071 25.3 9.9 35 5-42 3-37 (261)
397 COG2185 Sbm Methylmalonyl-CoA 38.1 66 0.0014 26.6 4.5 43 5-47 12-54 (143)
398 TIGR02329 propionate_PrpR prop 38.1 1.5E+02 0.0033 30.6 8.3 34 96-134 139-172 (526)
399 PRK10964 ADP-heptose:LPS hepto 38.1 97 0.0021 29.6 6.7 136 272-424 177-321 (322)
400 PRK11780 isoprenoid biosynthes 38.1 66 0.0014 28.9 5.1 39 5-43 1-43 (217)
401 TIGR01012 Sa_S2_E_A ribosomal 37.9 61 0.0013 28.5 4.6 33 104-136 108-142 (196)
402 cd01141 TroA_d Periplasmic bin 37.6 49 0.0011 28.5 4.2 38 92-132 60-99 (186)
403 TIGR02237 recomb_radB DNA repa 37.6 2.8E+02 0.0061 24.3 10.3 45 6-50 13-58 (209)
404 PF02572 CobA_CobO_BtuR: ATP:c 37.6 2.7E+02 0.0058 24.0 10.0 98 6-115 4-107 (172)
405 PRK14075 pnk inorganic polypho 37.5 52 0.0011 30.4 4.4 51 356-426 44-95 (256)
406 PRK02910 light-independent pro 37.5 47 0.001 34.3 4.6 35 93-132 353-387 (519)
407 PRK13193 pyrrolidone-carboxyla 37.5 90 0.0019 27.8 5.7 26 6-31 1-28 (209)
408 PRK03767 NAD(P)H:quinone oxido 37.4 61 0.0013 28.6 4.7 38 5-42 1-40 (200)
409 PRK08125 bifunctional UDP-gluc 37.0 2.7E+02 0.0058 29.9 10.3 41 93-135 66-107 (660)
410 PRK09288 purT phosphoribosylgl 36.9 3.6E+02 0.0078 26.5 10.7 38 2-44 9-46 (395)
411 TIGR00877 purD phosphoribosyla 36.8 1.6E+02 0.0035 29.3 8.3 90 6-130 1-93 (423)
412 PRK13011 formyltetrahydrofolat 36.6 3.5E+02 0.0077 25.4 9.9 108 2-134 86-196 (286)
413 PF01297 TroA: Periplasmic sol 36.3 1.6E+02 0.0035 27.0 7.6 84 30-134 146-231 (256)
414 PRK08322 acetolactate synthase 36.3 1.2E+02 0.0025 31.6 7.4 27 354-380 64-96 (547)
415 TIGR01005 eps_transp_fam exopo 36.3 2.9E+02 0.0063 30.1 10.7 40 5-44 545-586 (754)
416 PF01470 Peptidase_C15: Pyrogl 36.2 48 0.001 29.4 3.9 26 6-31 1-28 (202)
417 PRK08462 biotin carboxylase; V 36.1 2.7E+02 0.0059 28.0 9.8 100 3-130 2-106 (445)
418 PF01591 6PF2K: 6-phosphofruct 36.0 2.7E+02 0.0058 25.1 8.6 107 9-131 16-128 (222)
419 PRK00039 ruvC Holliday junctio 35.8 97 0.0021 26.4 5.5 50 84-136 44-108 (164)
420 TIGR01278 DPOR_BchB light-inde 35.7 47 0.001 34.3 4.3 35 93-132 355-389 (511)
421 PRK14476 nitrogenase molybdenu 35.6 2.3E+02 0.005 28.8 9.1 85 5-131 311-395 (455)
422 PF00862 Sucrose_synth: Sucros 35.5 43 0.00093 33.9 3.7 77 58-135 354-434 (550)
423 PRK14106 murD UDP-N-acetylmura 35.4 2.3E+02 0.005 28.5 9.2 33 6-43 6-38 (450)
424 PRK12446 undecaprenyldiphospho 35.3 1.8E+02 0.0039 28.3 8.1 26 352-379 92-120 (352)
425 cd01976 Nitrogenase_MoFe_alpha 35.3 42 0.0009 33.7 3.7 35 93-132 360-394 (421)
426 PF01075 Glyco_transf_9: Glyco 35.3 1.4E+02 0.003 27.0 7.0 99 6-135 106-212 (247)
427 PF03685 UPF0147: Uncharacteri 35.0 1.9E+02 0.0041 21.5 6.1 55 414-471 10-67 (85)
428 cd03412 CbiK_N Anaerobic cobal 35.0 72 0.0016 25.8 4.4 39 273-311 1-41 (127)
429 cd01840 SGNH_hydrolase_yrhL_li 34.9 1.2E+02 0.0027 25.0 6.1 39 272-311 50-88 (150)
430 COG0299 PurN Folate-dependent 34.9 1.5E+02 0.0032 26.1 6.3 121 272-422 50-172 (200)
431 cd02065 B12-binding_like B12 b 34.9 83 0.0018 24.9 4.8 41 8-48 2-42 (125)
432 PRK10422 lipopolysaccharide co 34.8 1.6E+02 0.0036 28.4 7.8 85 21-133 203-289 (352)
433 PF03701 UPF0181: Uncharacteri 34.8 1.3E+02 0.0029 19.7 4.6 37 428-468 12-48 (51)
434 PRK12815 carB carbamoyl phosph 34.6 2.3E+02 0.005 32.4 9.7 97 4-130 554-659 (1068)
435 cd02040 NifH NifH gene encodes 34.5 67 0.0014 29.6 4.8 39 5-43 1-39 (270)
436 CHL00076 chlB photochlorophyll 34.5 54 0.0012 33.8 4.4 35 93-132 365-399 (513)
437 PRK14099 glycogen synthase; Pr 34.5 65 0.0014 33.0 5.0 112 338-464 354-479 (485)
438 cd07025 Peptidase_S66 LD-Carbo 34.4 77 0.0017 29.7 5.2 29 284-312 44-72 (282)
439 TIGR01761 thiaz-red thiazoliny 34.4 2.6E+02 0.0056 27.1 8.8 113 293-426 16-137 (343)
440 cd02034 CooC The accessory pro 34.4 94 0.002 24.6 4.9 37 7-43 1-37 (116)
441 PRK14092 2-amino-4-hydroxy-6-h 34.4 96 0.0021 26.4 5.2 32 271-302 5-36 (163)
442 TIGR01007 eps_fam capsular exo 34.2 92 0.002 27.4 5.4 41 4-44 16-57 (204)
443 PRK06851 hypothetical protein; 34.2 1.3E+02 0.0029 29.4 6.8 50 3-52 27-77 (367)
444 PRK04539 ppnK inorganic polyph 33.8 76 0.0016 30.1 5.0 39 1-39 1-40 (296)
445 PRK03708 ppnK inorganic polyph 33.8 54 0.0012 30.7 3.9 51 356-426 60-113 (277)
446 PF04244 DPRP: Deoxyribodipyri 33.8 38 0.00083 30.5 2.9 26 18-43 47-72 (224)
447 PRK07178 pyruvate carboxylase 33.6 2.8E+02 0.0061 28.3 9.5 98 5-131 2-104 (472)
448 PRK08229 2-dehydropantoate 2-r 33.6 41 0.0009 32.4 3.3 34 5-43 2-35 (341)
449 PF05728 UPF0227: Uncharacteri 33.5 92 0.002 27.2 5.1 43 92-136 47-92 (187)
450 PRK08939 primosomal protein Dn 33.5 51 0.0011 31.4 3.8 46 5-50 156-201 (306)
451 PRK12726 flagellar biosynthesi 33.4 2.9E+02 0.0063 27.4 8.8 41 6-46 206-247 (407)
452 COG0191 Fba Fructose/tagatose 33.3 1E+02 0.0023 28.7 5.6 46 357-426 207-252 (286)
453 cd00316 Oxidoreductase_nitroge 33.3 2.8E+02 0.006 27.3 9.3 36 92-132 338-373 (399)
454 PRK09739 hypothetical protein; 33.3 95 0.0021 27.3 5.3 37 5-41 3-42 (199)
455 TIGR02700 flavo_MJ0208 archaeo 33.2 56 0.0012 29.7 3.9 42 8-49 2-45 (234)
456 TIGR00521 coaBC_dfp phosphopan 33.1 45 0.00097 33.0 3.4 45 5-50 3-47 (390)
457 COG1797 CobB Cobyrinic acid a, 32.9 1.2E+02 0.0025 30.3 6.1 32 7-38 2-34 (451)
458 PRK10490 sensor protein KdpD; 32.8 93 0.002 34.7 6.2 36 7-42 26-61 (895)
459 TIGR00514 accC acetyl-CoA carb 32.8 3.5E+02 0.0075 27.3 10.0 96 5-130 2-104 (449)
460 PRK04330 hypothetical protein; 32.8 2.1E+02 0.0046 21.4 7.1 54 415-471 14-70 (88)
461 PRK13194 pyrrolidone-carboxyla 32.7 1E+02 0.0022 27.5 5.3 26 6-31 1-28 (208)
462 PRK13185 chlL protochlorophyll 32.4 76 0.0016 29.4 4.8 38 5-42 1-39 (270)
463 COG2099 CobK Precorrin-6x redu 32.4 2.1E+02 0.0046 26.2 7.2 98 22-131 117-228 (257)
464 PF07015 VirC1: VirC1 protein; 32.4 1.3E+02 0.0027 27.4 5.8 44 5-48 1-45 (231)
465 PRK09107 acetolactate synthase 32.2 4.8E+02 0.01 27.6 11.2 120 272-424 418-542 (595)
466 TIGR02398 gluc_glyc_Psyn gluco 32.2 5.7E+02 0.012 26.2 15.9 109 337-464 364-483 (487)
467 PF01695 IstB_IS21: IstB-like 32.1 43 0.00094 28.9 2.8 45 5-49 47-91 (178)
468 PRK07525 sulfoacetaldehyde ace 32.0 1.7E+02 0.0038 30.7 7.9 27 354-380 69-101 (588)
469 PRK09590 celB cellobiose phosp 31.7 1E+02 0.0022 24.0 4.5 38 5-42 1-38 (104)
470 PRK14076 pnk inorganic polypho 31.7 62 0.0013 33.9 4.4 52 355-426 350-405 (569)
471 TIGR01918 various_sel_PB selen 31.3 87 0.0019 31.0 4.9 48 80-130 55-112 (431)
472 TIGR01917 gly_red_sel_B glycin 31.1 87 0.0019 31.0 4.9 48 80-130 55-112 (431)
473 PF03446 NAD_binding_2: NAD bi 31.1 49 0.0011 28.0 3.0 32 5-41 1-32 (163)
474 PRK13230 nitrogenase reductase 31.1 85 0.0018 29.3 4.9 38 5-42 1-38 (279)
475 COG2327 WcaK Polysaccharide py 30.9 4.5E+02 0.0098 25.9 9.7 87 335-432 266-357 (385)
476 COG4081 Uncharacterized protei 30.9 80 0.0017 25.4 3.8 38 7-44 4-43 (148)
477 COG2861 Uncharacterized protei 30.9 4.1E+02 0.0089 24.2 8.6 89 22-129 66-177 (250)
478 PRK09219 xanthine phosphoribos 30.9 1.2E+02 0.0026 26.6 5.3 42 89-132 37-80 (189)
479 COG1348 NifH Nitrogenase subun 30.8 1.2E+02 0.0027 27.5 5.3 43 5-47 1-43 (278)
480 PRK13869 plasmid-partitioning 30.6 5.5E+02 0.012 25.5 12.0 38 6-43 122-160 (405)
481 PF03308 ArgK: ArgK protein; 30.5 54 0.0012 30.2 3.2 111 6-131 30-150 (266)
482 PRK06835 DNA replication prote 30.4 56 0.0012 31.5 3.5 44 6-49 184-227 (329)
483 PRK03378 ppnK inorganic polyph 30.0 91 0.002 29.5 4.8 39 1-39 1-40 (292)
484 PRK00994 F420-dependent methyl 30.0 1E+02 0.0022 27.9 4.6 44 92-137 50-99 (277)
485 PF04364 DNA_pol3_chi: DNA pol 29.8 1.1E+02 0.0024 25.1 4.7 39 5-43 1-39 (137)
486 TIGR01369 CPSaseII_lrg carbamo 29.7 3.8E+02 0.0083 30.6 10.5 41 4-44 5-51 (1050)
487 TIGR00118 acolac_lg acetolacta 29.7 1.9E+02 0.004 30.2 7.6 27 354-380 65-97 (558)
488 PRK06719 precorrin-2 dehydroge 29.5 79 0.0017 26.7 3.9 33 5-42 13-45 (157)
489 PF01370 Epimerase: NAD depend 29.4 1.7E+02 0.0036 26.0 6.5 39 23-66 12-50 (236)
490 PRK14618 NAD(P)H-dependent gly 29.3 73 0.0016 30.6 4.2 35 3-42 2-36 (328)
491 TIGR00288 conserved hypothetic 29.1 1.6E+02 0.0035 25.0 5.6 44 13-66 112-156 (160)
492 TIGR03590 PseG pseudaminic aci 29.1 4.8E+02 0.01 24.3 10.7 95 6-134 171-269 (279)
493 PRK07004 replicative DNA helic 29.0 5.9E+02 0.013 25.9 10.7 40 8-47 216-256 (460)
494 COG0503 Apt Adenine/guanine ph 28.9 1.2E+02 0.0026 26.3 5.0 37 93-131 44-82 (179)
495 CHL00175 minD septum-site dete 28.9 1.1E+02 0.0024 28.5 5.2 41 3-43 12-54 (281)
496 PRK00170 azoreductase; Reviewe 28.8 1.1E+02 0.0024 26.7 5.0 38 5-42 1-44 (201)
497 PRK12921 2-dehydropantoate 2-r 28.5 82 0.0018 29.7 4.4 32 6-42 1-32 (305)
498 PF13450 NAD_binding_8: NAD(P) 28.5 72 0.0016 22.4 3.0 22 22-43 8-29 (68)
499 PRK06718 precorrin-2 dehydroge 28.4 93 0.002 27.5 4.4 34 4-42 9-42 (202)
500 CHL00072 chlL photochlorophyll 28.3 1E+02 0.0022 29.1 4.9 39 6-44 1-39 (290)
No 1
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.2e-67 Score=521.17 Aligned_cols=450 Identities=56% Similarity=1.022 Sum_probs=349.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCCh--------
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPA-------- 76 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~-------- 76 (473)
..||+++|+|++||++||+.||+.|+.+|+.|||++++.+..++...... .+++++..+|++..+++++.
T Consensus 9 ~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~--~~~i~~~~lp~P~~~~lPdG~~~~~~~~ 86 (477)
T PLN02863 9 GTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSK--HPSIETLVLPFPSHPSIPSGVENVKDLP 86 (477)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhccc--CCCeeEEeCCCCCcCCCCCCCcChhhcc
Confidence 58999999999999999999999999999999999999988777654221 13588888887654455422
Q ss_pred -hhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCC
Q 042753 77 -TRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDP 155 (473)
Q Consensus 77 -~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~ 155 (473)
..+..+...+. ...+.+.+++++.+.+|+|||+|.+.+|+..+|+++|||++.|++++++.++.+.+.+...|.....
T Consensus 87 ~~~~~~~~~a~~-~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~~~ 165 (477)
T PLN02863 87 PSGFPLMIHALG-ELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTKINP 165 (477)
T ss_pred hhhHHHHHHHHH-HhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcccccccc
Confidence 11223444444 5567777777764336799999999999999999999999999999999999888776544331001
Q ss_pred CCCCcc---ccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCc
Q 042753 156 DNVDAL---VSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDR 232 (473)
Q Consensus 156 ~~~~~~---~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~ 232 (473)
...... ..+|+++. +..++++.++..........+.+.+.......+.++++|||++||+.+++.+...++.++
T Consensus 166 ~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~ 242 (477)
T PLN02863 166 DDQNEILSFSKIPNCPK---YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHDR 242 (477)
T ss_pred cccccccccCCCCCCCC---cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCCC
Confidence 111111 23566654 777777776653322222344444444555677899999999999999999987652147
Q ss_pred EEEeccCCCCCCcchh-hccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeC
Q 042753 233 VWAVGPVLPPDDDLVE-SMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVRE 311 (473)
Q Consensus 233 ~~~vGpl~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 311 (473)
++.|||+.... .... ...++......++++.+|++.++++++|||||||....+.+++.+++.+|++++++|||+++.
T Consensus 243 v~~IGPL~~~~-~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~ 321 (477)
T PLN02863 243 VWAVGPILPLS-GEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKE 321 (477)
T ss_pred eEEeCCCcccc-cccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECC
Confidence 99999997543 1000 001111111234689999999888999999999999999999999999999999999999985
Q ss_pred CCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHH
Q 042753 312 PDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQL 391 (473)
Q Consensus 312 ~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~r 391 (473)
+. + .......+|++|.++...+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++
T Consensus 322 ~~-~-~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~ 399 (477)
T PLN02863 322 PV-N-EESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASL 399 (477)
T ss_pred Cc-c-cccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHH
Confidence 42 0 000113589999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcceEEeccCCCCCCCHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 042753 392 LVDQLGVGIRVGEGTRNIPESDELARLLAQSV-DGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 392 v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l-~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~ 464 (473)
+++.||+|+++.+++....+.+++.++|+++| +++ +||+||+++++..++++.+||||++++++|++++++.
T Consensus 400 v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~-~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 400 LVDELKVAVRVCEGADTVPDSDELARVFMESVSENQ-VERERAKELRRAALDAIKERGSSVKDLDGFVKHVVEL 472 (477)
T ss_pred HHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccH-HHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHh
Confidence 88788999999632224568999999999999 564 9999999999999999999999999999999999875
No 2
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.5e-66 Score=513.75 Aligned_cols=438 Identities=29% Similarity=0.472 Sum_probs=342.1
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCC-Chh-hH
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLL-TLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGS-PAT-RL 79 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~-~~~-~~ 79 (473)
..-.||+++|+|++||++|++.||+.|+ ++|++|||++++.+..++.+.... .+++++..+|++..++++ +.. ..
T Consensus 3 ~~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~--~~~i~~~~lp~p~~~glp~~~~~~~ 80 (481)
T PLN02992 3 ITKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLN--STGVDIVGLPSPDISGLVDPSAHVV 80 (481)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcccc--CCCceEEECCCccccCCCCCCccHH
Confidence 3457999999999999999999999998 789999999999886655333111 125899999977655665 222 11
Q ss_pred HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhcc-CCCCCCC-CC
Q 042753 80 LKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTD-LPTNDDP-DN 157 (473)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~-~p~~~~~-~~ 157 (473)
..+...+. ...+.+++++++...+|+|||+|.+++|+..+|+++|||++.|++++++.++.+.+.... .+. ... ..
T Consensus 81 ~~~~~~~~-~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~-~~~~~~ 158 (481)
T PLN02992 81 TKIGVIMR-EAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDI-KEEHTV 158 (481)
T ss_pred HHHHHHHH-HhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccc-cccccc
Confidence 22222233 556778888876422789999999999999999999999999999999887665544321 111 000 00
Q ss_pred CCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHh------hCCC
Q 042753 158 VDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKE------MGHD 231 (473)
Q Consensus 158 ~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~------~~~~ 231 (473)
...+..+|+++. +...+++..+... .......+.+......+++++++|||++||+.+++.+... .. +
T Consensus 159 ~~~~~~iPg~~~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~-~ 232 (481)
T PLN02992 159 QRKPLAMPGCEP---VRFEDTLDAYLVP--DEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVAR-V 232 (481)
T ss_pred CCCCcccCCCCc---cCHHHhhHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccC-C
Confidence 112345777764 5666666533221 2223445556666777899999999999999999988642 12 4
Q ss_pred cEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeC
Q 042753 232 RVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVRE 311 (473)
Q Consensus 232 ~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 311 (473)
+++.|||+...... ...++++.+|||.++.+++|||||||....+.+++++++.+|+.++++|||+++.
T Consensus 233 ~v~~VGPl~~~~~~-----------~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~ 301 (481)
T PLN02992 233 PVYPIGPLCRPIQS-----------SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRP 301 (481)
T ss_pred ceEEecCccCCcCC-----------CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 69999999764301 2244679999999888999999999999999999999999999999999999974
Q ss_pred CCccC-----C-------cc-cCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEec
Q 042753 312 PDERH-----A-------SQ-DCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLT 378 (473)
Q Consensus 312 ~~~~~-----~-------~~-~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~ 378 (473)
+.... + .+ ..+.+|++|.+++..+|+++.+|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~ 381 (481)
T PLN02992 302 PVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIA 381 (481)
T ss_pred CcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEe
Confidence 21000 0 00 02358999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccchhhHHHHHHHhcceEEeccCCC--CCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHHHHh--cCCChHH
Q 042753 379 WPMDADQYTNAQLLVDQLGVGIRVGEGTR--NIPESDELARLLAQSVDGP--RRERLKARELSGAALSAVV--KGGSSDR 452 (473)
Q Consensus 379 ~P~~~DQ~~na~rv~~~~G~G~~l~~~~~--~~~~~~~l~~~i~~~l~~~--~~~~~~a~~~~~~~~~~~~--~~gs~~~ 452 (473)
+|+++||+.||+++++++|+|+.++ . ..++.++|.++|+++|.++ +.++++|+++++..++++. +||||++
T Consensus 382 ~P~~~DQ~~na~~~~~~~g~gv~~~---~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~ 458 (481)
T PLN02992 382 WPLFAEQNMNAALLSDELGIAVRSD---DPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHE 458 (481)
T ss_pred cCccchhHHHHHHHHHHhCeeEEec---CCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 9999999999999976789999997 4 4689999999999999864 5899999999999999984 5999999
Q ss_pred HHHHHHHHHHhh
Q 042753 453 DLNDFIKRINEL 464 (473)
Q Consensus 453 ~~~~~~~~~~~~ 464 (473)
++++|++++++-
T Consensus 459 ~l~~~v~~~~~~ 470 (481)
T PLN02992 459 SLCRVTKECQRF 470 (481)
T ss_pred HHHHHHHHHHHH
Confidence 999999998874
No 3
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=3.6e-66 Score=513.23 Aligned_cols=455 Identities=31% Similarity=0.538 Sum_probs=346.3
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccC--CCCCCeeEEEcCCCCC-CCCCCh-----
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNAN--HPSTSLQSLVLPQPKW-PAGSPA----- 76 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~--~~~~~~~f~~l~~~~~-~~~~~~----- 76 (473)
..||+++|+|++||++|++.||+.|+.||+.|||++++.+...+...... .....++|..+|+|.. +++|+.
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~ 87 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLD 87 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccc
Confidence 36999999999999999999999999999999999999887666554321 1112489999987642 455532
Q ss_pred -----hhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCC
Q 042753 77 -----TRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPT 151 (473)
Q Consensus 77 -----~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~ 151 (473)
..+..+...+. .+.+.+.++|++...+++|||+|.+++|+..+|+++|||.+.|++++++....+++.+...+.
T Consensus 88 ~~~~~~~~~~~~~~~~-~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~ 166 (491)
T PLN02534 88 TLPSRDLLRKFYDAVD-KLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNAH 166 (491)
T ss_pred cCCcHHHHHHHHHHHH-HhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhccc
Confidence 11223333333 566788888886433689999999999999999999999999999999887765544333322
Q ss_pred CCCCCCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCC
Q 042753 152 NDDPDNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHD 231 (473)
Q Consensus 152 ~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~ 231 (473)
....++..+..+|+++....+...+++.++... .....+..........++++++|||++||+.+++.+...++ +
T Consensus 167 -~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~---~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~-~ 241 (491)
T PLN02534 167 -LSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSL---PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIK-K 241 (491)
T ss_pred -ccCCCCCceeecCCCCccccccHHHCChhhcCc---ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcC-C
Confidence 111122345568888765556777777654321 11222322232233457799999999999999999987776 6
Q ss_pred cEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeC
Q 042753 232 RVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVRE 311 (473)
Q Consensus 232 ~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 311 (473)
+++.|||+........+...++.......++|.+|||.+..+++|||||||......+++.+++.+|+.++++|||+++.
T Consensus 242 ~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~ 321 (491)
T PLN02534 242 KVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKT 321 (491)
T ss_pred cEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEec
Confidence 89999999753201000011111101124579999999888999999999999999999999999999999999999985
Q ss_pred CCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHH
Q 042753 312 PDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQL 391 (473)
Q Consensus 312 ~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~r 391 (473)
+.... +.+...+|++|.++..++|+++.+|+||.+||+|++++||||||||||++||+++|||||++|++.||+.||++
T Consensus 322 ~~~~~-~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~ 400 (491)
T PLN02534 322 GEKHS-ELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKL 400 (491)
T ss_pred Ccccc-chhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHH
Confidence 31000 00011368999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcceEEecc------CCC---C-CCCHHHHHHHHHHHhC--C-c-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 042753 392 LVDQLGVGIRVGE------GTR---N-IPESDELARLLAQSVD--G-P-RRERLKARELSGAALSAVVKGGSSDRDLNDF 457 (473)
Q Consensus 392 v~~~~G~G~~l~~------~~~---~-~~~~~~l~~~i~~~l~--~-~-~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~ 457 (473)
+++.||+|+++.- ++. + ..++++|+++|+++|. + + +++|+||++|++..++++.+||||++++++|
T Consensus 401 ~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~f 480 (491)
T PLN02534 401 IVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSIL 480 (491)
T ss_pred HHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 9999999998841 001 1 3899999999999996 2 2 6899999999999999999999999999999
Q ss_pred HHHHHhhcc
Q 042753 458 IKRINELKS 466 (473)
Q Consensus 458 ~~~~~~~~~ 466 (473)
++.+++..+
T Consensus 481 v~~i~~~~~ 489 (491)
T PLN02534 481 IQDVLKQQS 489 (491)
T ss_pred HHHHHHHhc
Confidence 999987543
No 4
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=6e-66 Score=517.53 Aligned_cols=453 Identities=32% Similarity=0.590 Sum_probs=342.5
Q ss_pred CCCCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCC--CCC--CeeEEEcCCCCC-CCCCC
Q 042753 1 MLPAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANH--PST--SLQSLVLPQPKW-PAGSP 75 (473)
Q Consensus 1 ~~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~--~~~--~~~f~~l~~~~~-~~~~~ 75 (473)
|+..+.||+++|+|++||++|++.||++|+.|||+|||++++.+..++++.+... ..+ .+++..++++.. +++++
T Consensus 1 ~~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~ 80 (482)
T PLN03007 1 MNHEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPE 80 (482)
T ss_pred CCCCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCC
Confidence 6667889999999999999999999999999999999999999887766543210 011 134444444421 23331
Q ss_pred h----------------hhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHH
Q 042753 76 A----------------TRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFAL 139 (473)
Q Consensus 76 ~----------------~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~ 139 (473)
. ..+..+..... .+.+.+.+++++. +|||||+|.+++|+..+|+++|||.+.|++++++..
T Consensus 81 g~e~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~l~~~--~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~ 157 (482)
T PLN03007 81 GCENVDFITSNNNDDSGDLFLKFLFSTK-YFKDQLEKLLETT--RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSL 157 (482)
T ss_pred CcccccccccccccchHHHHHHHHHHHH-HHHHHHHHHHhcC--CCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHH
Confidence 1 11222333333 6677888888877 899999999999999999999999999999999877
Q ss_pred HHHHhhhccCCCCCCCCCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHH
Q 042753 140 SVSFAMWTDLPTNDDPDNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERV 219 (473)
Q Consensus 140 ~~~~~~~~~~p~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~ 219 (473)
..+++.....|. ........+..+|+++..+.+...+++.. .......+++........+.+++++|||+++|+.
T Consensus 158 ~~~~~~~~~~~~-~~~~~~~~~~~~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~ 232 (482)
T PLN03007 158 CASYCIRVHKPQ-KKVASSSEPFVIPDLPGDIVITEEQINDA----DEESPMGKFMKEVRESEVKSFGVLVNSFYELESA 232 (482)
T ss_pred HHHHHHHhcccc-cccCCCCceeeCCCCCCccccCHHhcCCC----CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHH
Confidence 766544433332 11111112334777764344444444421 1112233445555566778889999999999999
Q ss_pred HHHHHHHhhCCCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHH
Q 042753 220 YIDHMKKEMGHDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALE 299 (473)
Q Consensus 220 ~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~ 299 (473)
+.+.+.+... +.+++|||+........+...++...+..++++.+|++.++.+++|||||||....+.+++.+++.+|+
T Consensus 233 ~~~~~~~~~~-~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~ 311 (482)
T PLN03007 233 YADFYKSFVA-KRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLE 311 (482)
T ss_pred HHHHHHhccC-CCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHH
Confidence 8888877655 579999998653301000000111112235789999999878999999999999888999999999999
Q ss_pred hCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecC
Q 042753 300 KTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTW 379 (473)
Q Consensus 300 ~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~ 379 (473)
.++++|||+++.+... ....+.+|++|.++..++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 312 ~~~~~flw~~~~~~~~--~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~ 389 (482)
T PLN03007 312 GSGQNFIWVVRKNENQ--GEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTW 389 (482)
T ss_pred HCCCCEEEEEecCCcc--cchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeec
Confidence 9999999999974200 01123589999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHhcceEEeccC-----CCCCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHHHHhcCCChHH
Q 042753 380 PMDADQYTNAQLLVDQLGVGIRVGEG-----TRNIPESDELARLLAQSVDGP--RRERLKARELSGAALSAVVKGGSSDR 452 (473)
Q Consensus 380 P~~~DQ~~na~rv~~~~G~G~~l~~~-----~~~~~~~~~l~~~i~~~l~~~--~~~~~~a~~~~~~~~~~~~~~gs~~~ 452 (473)
|+++||+.||+++++.+++|+.+..+ +...+++++|.++|+++|.++ ++||++|+++++.+++++.+||||++
T Consensus 390 P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~ 469 (482)
T PLN03007 390 PVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFN 469 (482)
T ss_pred cchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999999998777777776310 145689999999999999874 48999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 042753 453 DLNDFIKRINEL 464 (473)
Q Consensus 453 ~~~~~~~~~~~~ 464 (473)
++++|++.+++.
T Consensus 470 ~l~~~v~~~~~~ 481 (482)
T PLN03007 470 DLNKFMEELNSR 481 (482)
T ss_pred HHHHHHHHHHhc
Confidence 999999998864
No 5
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.1e-65 Score=504.14 Aligned_cols=450 Identities=27% Similarity=0.425 Sum_probs=340.7
Q ss_pred CCCC-ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCCh---
Q 042753 1 MLPA-GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPA--- 76 (473)
Q Consensus 1 ~~~~-~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~--- 76 (473)
|+.+ ..||+++|+|++||++|++.||+.|+.||+.|||++++.+...+..... ...+++++..+|++..+++++.
T Consensus 1 ~~~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~-~~~~~i~~~~lp~p~~dglp~~~~~ 79 (472)
T PLN02670 1 MKREEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS-QLSSSITLVSFPLPSVPGLPSSAES 79 (472)
T ss_pred CCCCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc-cCCCCeeEEECCCCccCCCCCCccc
Confidence 4444 4699999999999999999999999999999999999988766653211 1123589999997765566632
Q ss_pred -hhH----HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCC
Q 042753 77 -TRL----LKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPT 151 (473)
Q Consensus 77 -~~~----~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~ 151 (473)
..+ ..++....+.+.+.+.+++++. +++|||+|.+++|+..+|+++|||++.|++++++.+..+.+.......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~ 157 (472)
T PLN02670 80 STDVPYTKQQLLKKAFDLLEPPLTTFLETS--KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEG 157 (472)
T ss_pred ccccchhhHHHHHHHHHHhHHHHHHHHHhC--CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhc
Confidence 111 1122233336778889999888 899999999999999999999999999999999877775533211000
Q ss_pred CCCCCCCCccc-cCCCC-C--CCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHh
Q 042753 152 NDDPDNVDALV-SFPRV-P--NCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKE 227 (473)
Q Consensus 152 ~~~~~~~~~~~-~~p~l-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~ 227 (473)
.......... .+|+. | ..+.+..++++.++............+.+......++.++++|||++||+.+++.+...
T Consensus 158 -~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~ 236 (472)
T PLN02670 158 -GDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDL 236 (472)
T ss_pred -ccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHh
Confidence 0110111111 23432 2 11235556777766432222222333445555667789999999999999999999876
Q ss_pred hCCCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEE
Q 042753 228 MGHDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVY 307 (473)
Q Consensus 228 ~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 307 (473)
++ ++++.|||+...... . ...........+++.+|||.++.+++|||||||....+.+++.+++.+|+.++++|||
T Consensus 237 ~~-~~v~~VGPl~~~~~~--~-~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlW 312 (472)
T PLN02670 237 YR-KPIIPIGFLPPVIED--D-EEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFW 312 (472)
T ss_pred hC-CCeEEEecCCccccc--c-ccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEE
Confidence 55 689999999753101 0 0000000012357999999988899999999999999999999999999999999999
Q ss_pred EEeCCCccCCccc-CCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccch
Q 042753 308 CVREPDERHASQD-CGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQY 386 (473)
Q Consensus 308 ~~~~~~~~~~~~~-~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~ 386 (473)
+++.+. + .+.+ .+.+|++|.++...+++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 313 v~r~~~-~-~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~ 390 (472)
T PLN02670 313 VLRNEP-G-TTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQG 390 (472)
T ss_pred EEcCCc-c-cccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccH
Confidence 998631 0 0111 135899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcceEEeccCC-CCCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 387 TNAQLLVDQLGVGIRVGEGT-RNIPESDELARLLAQSVDGP--RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 387 ~na~rv~~~~G~G~~l~~~~-~~~~~~~~l~~~i~~~l~~~--~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
.||++++ .+|+|+.++..+ ...++.++|+++|+++|.++ ++||+||+++++.++ +.++..++++.+++++++
T Consensus 391 ~Na~~v~-~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~----~~~~~~~~~~~~~~~l~~ 465 (472)
T PLN02670 391 LNTRLLH-GKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFG----DMDRNNRYVDELVHYLRE 465 (472)
T ss_pred HHHHHHH-HcCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHh----CcchhHHHHHHHHHHHHH
Confidence 9999998 569999997311 13489999999999999774 479999999999996 457789999999999999
Q ss_pred hc
Q 042753 464 LK 465 (473)
Q Consensus 464 ~~ 465 (473)
+.
T Consensus 466 ~~ 467 (472)
T PLN02670 466 NR 467 (472)
T ss_pred hc
Confidence 86
No 6
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=5e-65 Score=500.39 Aligned_cols=430 Identities=25% Similarity=0.443 Sum_probs=334.7
Q ss_pred CCCCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCC-----
Q 042753 1 MLPAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSP----- 75 (473)
Q Consensus 1 ~~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~----- 75 (473)
|.....||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.... .++++|..+|+ ++++
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~----~~~i~~~~ipd----glp~~~~~~ 72 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDP----SSPISIATISD----GYDQGGFSS 72 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCC----CCCEEEEEcCC----CCCCccccc
Confidence 4445579999999999999999999999999999999999997765543221 13599998873 3332
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHhcC--CCCC-cEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCC
Q 042753 76 ATRLLKFMRVLRELHYPALLDWFKSH--PSPP-VAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTN 152 (473)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~p-D~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~ 152 (473)
......+.....+...+.+.++|++. ..+| +|||+|.+++|+..+|+++|||.+.|++++++.+..+++...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~----- 147 (449)
T PLN02173 73 AGSVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYI----- 147 (449)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHh-----
Confidence 12233455555445667778877753 1145 999999999999999999999999999998887766543211
Q ss_pred CCCCCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCc
Q 042753 153 DDPDNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDR 232 (473)
Q Consensus 153 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~ 232 (473)
.. ......+|+++. +..++++.++..........+.+.+......+++++++|||++||+.+++.+... ++
T Consensus 148 ~~---~~~~~~~pg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~---~~ 218 (449)
T PLN02173 148 NN---GSLTLPIKDLPL---LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV---CP 218 (449)
T ss_pred cc---CCccCCCCCCCC---CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc---CC
Confidence 00 112345778775 6677787766432222223344445556677889999999999999999888652 36
Q ss_pred EEEeccCCCCCCcchhhc--cCCC--CCC--CChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEE
Q 042753 233 VWAVGPVLPPDDDLVESM--CRGG--SSS--VPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFV 306 (473)
Q Consensus 233 ~~~vGpl~~~~~~~~~~~--~~~~--~~~--~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 306 (473)
++.|||+.+.. .+.... ..+. ..+ ..+++|.+||+.++.+++|||||||....+.+++.+++.+| .+.+|+
T Consensus 219 v~~VGPl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~fl 295 (449)
T PLN02173 219 VLTIGPTVPSM-YLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYL 295 (449)
T ss_pred eeEEcccCchh-hccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEE
Confidence 99999997531 000000 0110 001 23456999999988889999999999999999999999999 777899
Q ss_pred EEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccch
Q 042753 307 YCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQY 386 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~ 386 (473)
|+++.+. .+.+|++|.++...+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 296 Wvvr~~~-------~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~ 368 (449)
T PLN02173 296 WVVRASE-------ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQP 368 (449)
T ss_pred EEEeccc-------hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcch
Confidence 9998542 135889999888778888889999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcceEEeccCCC-CCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 042753 387 TNAQLLVDQLGVGIRVGEGTR-NIPESDELARLLAQSVDGP--RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRIN 462 (473)
Q Consensus 387 ~na~rv~~~~G~G~~l~~~~~-~~~~~~~l~~~i~~~l~~~--~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~ 462 (473)
.||+++++.||+|+.+..++. ..++.++|+++|+++|.++ +.+|++|++++++.++++.+||||++++++|++++.
T Consensus 369 ~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 369 MNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred HHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 999999988899999863111 2369999999999999765 589999999999999999999999999999999874
No 7
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=7.1e-65 Score=501.75 Aligned_cols=428 Identities=24% Similarity=0.404 Sum_probs=326.7
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCCh----hhH
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPA----TRL 79 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~----~~~ 79 (473)
+..||+++|+|++||++|++.||+.|+.||+.|||++++.+.... . ....+++|..+|+ ++|+. ...
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~--~---~~~~~i~~~~ip~----glp~~~~~~~~~ 76 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSP--S---DDFTDFQFVTIPE----SLPESDFKNLGP 76 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccc--c---cCCCCeEEEeCCC----CCCcccccccCH
Confidence 467999999999999999999999999999999999999764211 1 0113588888873 33321 111
Q ss_pred HHHHHHHHHHhhHHHHHHHhcC----CCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhcc------C
Q 042753 80 LKFMRVLRELHYPALLDWFKSH----PSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTD------L 149 (473)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~----~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~------~ 149 (473)
..+.....+.+.+.+.+++++. ..+++|||+|.+++|+..+|+++|||.+.|++++++.+..+.++... .
T Consensus 77 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~ 156 (451)
T PLN02410 77 IEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLA 156 (451)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCC
Confidence 1233333334445555555442 22579999999999999999999999999999999988776654221 1
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhC
Q 042753 150 PTNDDPDNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMG 229 (473)
Q Consensus 150 p~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~ 229 (473)
|. .... ...+..+|+++. +..++++.+.... .......+... ....+++++++|||++||+.+++++....+
T Consensus 157 ~~-~~~~-~~~~~~iPg~~~---~~~~dlp~~~~~~--~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~ 228 (451)
T PLN02410 157 PL-KEPK-GQQNELVPEFHP---LRCKDFPVSHWAS--LESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQQQLQ 228 (451)
T ss_pred Cc-cccc-cCccccCCCCCC---CChHHCcchhcCC--cHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHHhccC
Confidence 22 1111 112335777764 4555555432211 11122222222 234678899999999999999999987666
Q ss_pred CCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEE
Q 042753 230 HDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCV 309 (473)
Q Consensus 230 ~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 309 (473)
+++++|||+.... . .+...+....++.+|||.++.+++|||||||....+.+++++++.+|+.++.+|+|++
T Consensus 229 -~~v~~vGpl~~~~-~------~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~ 300 (451)
T PLN02410 229 -IPVYPIGPLHLVA-S------APTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVI 300 (451)
T ss_pred -CCEEEeccccccc-C------CCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 6899999997543 1 0001122335689999998889999999999999999999999999999999999999
Q ss_pred eCCCccCCccc-CCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhh
Q 042753 310 REPDERHASQD-CGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTN 388 (473)
Q Consensus 310 ~~~~~~~~~~~-~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~n 388 (473)
+.+..+ +.+ .+.+|++|.+|...++ ++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.|
T Consensus 301 r~~~~~--~~~~~~~lp~~f~er~~~~g-~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~n 377 (451)
T PLN02410 301 RPGSVR--GSEWIESLPKEFSKIISGRG-YIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVN 377 (451)
T ss_pred ccCccc--ccchhhcCChhHHHhccCCe-EEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHH
Confidence 853100 001 1348999999987655 555999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 389 AQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP--RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 389 a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~--~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
|+++++.||+|+.+. ..+++++|+++|+++|.++ +.|+++|+++++.+++++.+||||++++++|+++++.
T Consensus 378 a~~~~~~~~~G~~~~----~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 378 ARYLECVWKIGIQVE----GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HHHHHHHhCeeEEeC----CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 999998889999996 3689999999999999765 5899999999999999999999999999999999864
No 8
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=6.9e-65 Score=500.59 Aligned_cols=422 Identities=24% Similarity=0.354 Sum_probs=329.1
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCCh-h---hH-
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPA-T---RL- 79 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~-~---~~- 79 (473)
-.||+++|+|++||++|++.||+.|++|||+|||++++.+...+.+... ...++++..++++..+++++. . .+
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a--~~~~i~~~~l~~p~~dgLp~g~~~~~~l~ 81 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNL--FPDSIVFHPLTIPPVNGLPAGAETTSDIP 81 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccC--CCCceEEEEeCCCCccCCCCCcccccchh
Confidence 4799999999999999999999999999999999999988776654321 112467777766533455532 1 11
Q ss_pred ---HH-HHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCC
Q 042753 80 ---LK-FMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDP 155 (473)
Q Consensus 80 ---~~-~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~ 155 (473)
.. +...+. .+.+.+.+++++. ++||||+| ++.|+..+|+++|||++.|++++++.+. +.+.. . ...
T Consensus 82 ~~l~~~~~~~~~-~~~~~l~~~L~~~--~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~----~-~~~ 151 (442)
T PLN02208 82 ISMDNLLSEALD-LTRDQVEAAVRAL--RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVP----G-GKL 151 (442)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhC--CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccC----c-ccc
Confidence 11 233343 7778899999888 89999999 5789999999999999999999998653 33221 1 010
Q ss_pred CCCCccccCCCCCCC-CCCCccccchhhhccCCCCCchH-HHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcE
Q 042753 156 DNVDALVSFPRVPNC-PVYPWYQISHLYRTLKEGDPDWD-LHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRV 233 (473)
Q Consensus 156 ~~~~~~~~~p~l~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~ 233 (473)
...+|+++.. +.+..++++.+. ....... +.....+...+++++++|||++||+.+++.+...++ +++
T Consensus 152 -----~~~~pglp~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~-~~v 221 (442)
T PLN02208 152 -----GVPPPGYPSSKVLFRENDAHALA----TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYH-KKV 221 (442)
T ss_pred -----CCCCCCCCCcccccCHHHcCccc----ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcC-CCE
Confidence 1235777642 335555666431 1112222 233333456688999999999999999999987666 799
Q ss_pred EEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 042753 234 WAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPD 313 (473)
Q Consensus 234 ~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 313 (473)
+.|||+.... . . ....++++.+|||.+..+++|||||||....+.+++.+++.+++..+.+++|+.+.+.
T Consensus 222 ~~vGpl~~~~-~------~---~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~ 291 (442)
T PLN02208 222 LLTGPMFPEP-D------T---SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPR 291 (442)
T ss_pred EEEeecccCc-C------C---CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 9999998654 1 0 0235678999999988899999999999998999999999999888999999988541
Q ss_pred ccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHHH
Q 042753 314 ERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLV 393 (473)
Q Consensus 314 ~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~ 393 (473)
+. ....+.+|++|.++...+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++++
T Consensus 292 -~~-~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~ 369 (442)
T PLN02208 292 -GS-STVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMT 369 (442)
T ss_pred -cc-cchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHH
Confidence 00 0112458999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc----HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 042753 394 DQLGVGIRVGEGTRNIPESDELARLLAQSVDGP----RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 394 ~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~----~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~ 464 (473)
+.+|+|+.+++++.+.+++++|.++|+++|+++ +.+|++|+++++.+. .+|||++++++|++.+++.
T Consensus 370 ~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 370 EEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEELQEY 440 (442)
T ss_pred HHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHh
Confidence 768999999731112399999999999999764 359999999999984 4789999999999999764
No 9
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.4e-64 Score=501.24 Aligned_cols=446 Identities=26% Similarity=0.421 Sum_probs=338.0
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhh--c-c---CCC-CCCeeEEEcCCCCCCCCCCh-
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSL--N-A---NHP-STSLQSLVLPQPKWPAGSPA- 76 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~--~-~---~~~-~~~~~f~~l~~~~~~~~~~~- 76 (473)
..||+++|+|++||++||+.||+.|+.||..|||++++.+..++.+. . . ... ...++|..+| ++++..
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p----dglp~~~ 82 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE----DGWAEDD 82 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC----CCCCCCc
Confidence 68999999999999999999999999999999999999877665431 1 0 000 1125555454 233321
Q ss_pred ---hhHHHHHHHHHHHhhHHHHHHHhcC---CCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhcc-C
Q 042753 77 ---TRLLKFMRVLRELHYPALLDWFKSH---PSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTD-L 149 (473)
Q Consensus 77 ---~~~~~~~~~~~~~~~~~l~~~l~~~---~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~-~ 149 (473)
..+..++..+.+...+.+.++|++. ..+++|||+|.++.|+..+|+++|||.+.|++++++.++.+.+.... .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~~~ 162 (480)
T PLN02555 83 PRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHGLV 162 (480)
T ss_pred ccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhcCC
Confidence 1233444444445566777777643 11349999999999999999999999999999999988887766432 1
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhC
Q 042753 150 PTNDDPDNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMG 229 (473)
Q Consensus 150 p~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~ 229 (473)
+. ......+.+..+|++|. +..++++.++..........+.+.+......+++++++|||++||+.+++.+... .
T Consensus 163 ~~-~~~~~~~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~-~ 237 (480)
T PLN02555 163 PF-PTETEPEIDVQLPCMPL---LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKL-C 237 (480)
T ss_pred Cc-ccccCCCceeecCCCCC---cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhC-C
Confidence 21 11111123456888875 6777887765321112223444555556677889999999999999999988663 3
Q ss_pred CCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEE
Q 042753 230 HDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCV 309 (473)
Q Consensus 230 ~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 309 (473)
+ ++.|||+...... .+ ...++..+..++++.+||+.+..+++|||||||+...+.+++.+++.+|+..+++|||++
T Consensus 238 -~-v~~iGPl~~~~~~-~~-~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~ 313 (480)
T PLN02555 238 -P-IKPVGPLFKMAKT-PN-SDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVM 313 (480)
T ss_pred -C-EEEeCcccCcccc-cc-ccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 4 9999999764301 00 011111123456899999998778999999999999999999999999999999999999
Q ss_pred eCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhH
Q 042753 310 REPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNA 389 (473)
Q Consensus 310 ~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na 389 (473)
+...... ....+.+|++|.++.. .|..+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||
T Consensus 314 ~~~~~~~-~~~~~~lp~~~~~~~~-~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na 391 (480)
T PLN02555 314 RPPHKDS-GVEPHVLPEEFLEKAG-DKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDA 391 (480)
T ss_pred ecCcccc-cchhhcCChhhhhhcC-CceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHH
Confidence 8431000 0111358888888775 4556679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcceEEeccC--CCCCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhc
Q 042753 390 QLLVDQLGVGIRVGEG--TRNIPESDELARLLAQSVDGP--RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINELK 465 (473)
Q Consensus 390 ~rv~~~~G~G~~l~~~--~~~~~~~~~l~~~i~~~l~~~--~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~ 465 (473)
+++++.||+|+.+.++ +...++.++|.++|+++|.++ +.+|+||++|+++.++++.+||||++++++|++++.+..
T Consensus 392 ~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~~ 471 (480)
T PLN02555 392 VYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRKS 471 (480)
T ss_pred HHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 9999889999999421 134689999999999999765 689999999999999999999999999999999998763
No 10
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.9e-64 Score=494.49 Aligned_cols=432 Identities=26% Similarity=0.393 Sum_probs=333.4
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCCh------
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPA------ 76 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~------ 76 (473)
....||+++|+|++||++|++.||+.|+.||+.|||++++.+...+...........+.+..+|. .+++++.
T Consensus 3 ~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~--~~glp~g~e~~~~ 80 (453)
T PLN02764 3 GLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPH--VDGLPVGTETVSE 80 (453)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCC--cCCCCCccccccc
Confidence 44579999999999999999999999999999999999998766554420000011255555553 2355432
Q ss_pred ---hhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCC
Q 042753 77 ---TRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTND 153 (473)
Q Consensus 77 ---~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~ 153 (473)
.....+...+. .+.+.+.+++++. +|||||+|. ++|+..+|+++|||.+.|++++++.+..+.+ +. .
T Consensus 81 ~~~~~~~~~~~a~~-~~~~~~~~~l~~~--~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-----~~-~ 150 (453)
T PLN02764 81 IPVTSADLLMSAMD-LTRDQVEVVVRAV--EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-----PG-G 150 (453)
T ss_pred CChhHHHHHHHHHH-HhHHHHHHHHHhC--CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-----cc-c
Confidence 11123444444 6678899999888 889999995 7899999999999999999999987777542 11 1
Q ss_pred CCCCCCccccCCCCCCC-CCCCccccchhhhcc--CCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCC
Q 042753 154 DPDNVDALVSFPRVPNC-PVYPWYQISHLYRTL--KEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGH 230 (473)
Q Consensus 154 ~~~~~~~~~~~p~l~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~ 230 (473)
.. ..++|++|.. +.++.++++.+.... ........++.+......++.++++|||++||+.+++.+....+
T Consensus 151 ~~-----~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~- 224 (453)
T PLN02764 151 EL-----GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCR- 224 (453)
T ss_pred cC-----CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcC-
Confidence 11 1224677632 124455555432211 01112334455554667788899999999999999999977555
Q ss_pred CcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEe
Q 042753 231 DRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVR 310 (473)
Q Consensus 231 ~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 310 (473)
++++.|||+.... . .. ...++++.+|||.++.+++|||||||....+.+++.++..+|+..+.+|+|+++
T Consensus 225 ~~v~~VGPL~~~~-~------~~---~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r 294 (453)
T PLN02764 225 KKVLLTGPVFPEP-D------KT---RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVK 294 (453)
T ss_pred CcEEEeccCccCc-c------cc---ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 6899999997543 1 00 113468999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHH
Q 042753 311 EPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQ 390 (473)
Q Consensus 311 ~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 390 (473)
.+.-. +...+.+|++|.++...+++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+
T Consensus 295 ~~~~~--~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~ 372 (453)
T PLN02764 295 PPRGS--STIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTR 372 (453)
T ss_pred CCCCC--cchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHH
Confidence 53200 0112459999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc----HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcc
Q 042753 391 LLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP----RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINELKS 466 (473)
Q Consensus 391 rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~----~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~ 466 (473)
++++.+|+|+.+.+++...++.++|+++|+++|+++ +.+|++|+++++.+ ++||||++++++|++++++..+
T Consensus 373 ~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~----~~~GSS~~~l~~lv~~~~~~~~ 448 (453)
T PLN02764 373 LLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETL----ASPGLLTGYVDNFIESLQDLVS 448 (453)
T ss_pred HHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHHhcc
Confidence 998678999998621113689999999999999763 45999999999998 5689999999999999999865
Q ss_pred CC
Q 042753 467 GK 468 (473)
Q Consensus 467 ~~ 468 (473)
+.
T Consensus 449 ~~ 450 (453)
T PLN02764 449 GT 450 (453)
T ss_pred cc
Confidence 54
No 11
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=2.4e-64 Score=495.16 Aligned_cols=438 Identities=30% Similarity=0.485 Sum_probs=338.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCChhhhh--hhccCC-CCCCeeEEEcCCCCCCCC-CCh-hhH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTL-GLNVTVLITQNNLPLLD--SLNANH-PSTSLQSLVLPQPKWPAG-SPA-TRL 79 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~i~--~~~~~~-~~~~~~f~~l~~~~~~~~-~~~-~~~ 79 (473)
+||+++|+|++||++|++.||+.|+.+ |..|||++++.+...+. ...... ..+++++..+|++..+++ +.. ...
T Consensus 4 pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~~~ 83 (470)
T PLN03015 4 PHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDATIF 83 (470)
T ss_pred cEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCccHH
Confidence 599999999999999999999999987 99999999887654431 111111 112599999997655555 322 222
Q ss_pred HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCC-cEEEecchHHHHHHHHhhhccC-CCCCCCCC
Q 042753 80 LKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLP-RVVFSPSGAFALSVSFAMWTDL-PTNDDPDN 157 (473)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP-~v~~~~~~~~~~~~~~~~~~~~-p~~~~~~~ 157 (473)
..+...+. .+.+.+.++|++...+++|||+|.+++|+..+|+++||| .+.+++++++....+.++.... +.......
T Consensus 84 ~~~~~~~~-~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~~~~~~ 162 (470)
T PLN03015 84 TKMVVKMR-AMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVEGEYVD 162 (470)
T ss_pred HHHHHHHH-hchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcccccccCC
Confidence 34444444 677888888887533679999999999999999999999 5888888888776665543211 11000001
Q ss_pred CCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhh------CCC
Q 042753 158 VDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEM------GHD 231 (473)
Q Consensus 158 ~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~------~~~ 231 (473)
...+..+|+++. +..++++..+... .......+.+......+++|+++|||++||+.+++.+...+ . +
T Consensus 163 ~~~~~~vPg~p~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~-~ 236 (470)
T PLN03015 163 IKEPLKIPGCKP---VGPKELMETMLDR--SDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMK-V 236 (470)
T ss_pred CCCeeeCCCCCC---CChHHCCHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccC-C
Confidence 113456788875 7777787655322 11123333344456788999999999999999999987642 2 4
Q ss_pred cEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeC
Q 042753 232 RVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVRE 311 (473)
Q Consensus 232 ~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 311 (473)
+++.|||+.... . . ...++++.+|||.++.+++|||||||....+.+++++++.+|+.++++|||+++.
T Consensus 237 ~v~~VGPl~~~~-~-----~-----~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~ 305 (470)
T PLN03015 237 PVYPIGPIVRTN-V-----H-----VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRR 305 (470)
T ss_pred ceEEecCCCCCc-c-----c-----ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEec
Confidence 699999998533 1 0 1123579999999888999999999999999999999999999999999999974
Q ss_pred CCc-----cC-CcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccc
Q 042753 312 PDE-----RH-ASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQ 385 (473)
Q Consensus 312 ~~~-----~~-~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ 385 (473)
+.. .. .+...+.+|++|.+++..+++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||
T Consensus 306 ~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ 385 (470)
T PLN03015 306 PASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQ 385 (470)
T ss_pred CccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccch
Confidence 310 00 000113589999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhcceEEecc-CCCCCCCHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 042753 386 YTNAQLLVDQLGVGIRVGE-GTRNIPESDELARLLAQSVDG---P-RRERLKARELSGAALSAVVKGGSSDRDLNDFIKR 460 (473)
Q Consensus 386 ~~na~rv~~~~G~G~~l~~-~~~~~~~~~~l~~~i~~~l~~---~-~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~ 460 (473)
+.||+++++.+|+|+.+.+ ++...+++++|+++|+++|.+ + +.+|+||++|+++.++++.+||||++++++++.+
T Consensus 386 ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~ 465 (470)
T PLN03015 386 WMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKR 465 (470)
T ss_pred HHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHh
Confidence 9999999879999999952 112468999999999999952 2 6999999999999999999999999999999988
Q ss_pred H
Q 042753 461 I 461 (473)
Q Consensus 461 ~ 461 (473)
+
T Consensus 466 ~ 466 (470)
T PLN03015 466 C 466 (470)
T ss_pred c
Confidence 6
No 12
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=3.6e-64 Score=498.31 Aligned_cols=431 Identities=20% Similarity=0.350 Sum_probs=330.3
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
..||+++|+|++||++|++.||+.|+.+|++|||++++.+..++...... .++++|+.+|....++.+ ..+..+..
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~--~~~i~~v~lp~g~~~~~~--~~~~~l~~ 81 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDP--KLGITFMSISDGQDDDPP--RDFFSIEN 81 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCC--CCCEEEEECCCCCCCCcc--ccHHHHHH
Confidence 36999999999999999999999999999999999999887666544221 136899988853222211 12334444
Q ss_pred HHHHHhhHHHHHHHhcCC--CCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCC--CCCCC-C-C
Q 042753 85 VLRELHYPALLDWFKSHP--SPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPT--NDDPD-N-V 158 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~--~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~--~~~~~-~-~ 158 (473)
.+...+.+.+.+++++.. .+++|||+|.+.+|+..+|+++|||++.|+++++..++.+.+....... ..... . .
T Consensus 82 a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (448)
T PLN02562 82 SMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCPRQ 161 (448)
T ss_pred HHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccccccccc
Confidence 544356677788887641 1348999999999999999999999999999999877766544321111 00000 0 0
Q ss_pred Ccc-ccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHh----hCCCcE
Q 042753 159 DAL-VSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKE----MGHDRV 233 (473)
Q Consensus 159 ~~~-~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~----~~~~~~ 233 (473)
..+ ..+|+++. +..++++.++..........+.+.+......++.++++|||++||+.+++.+... .. |++
T Consensus 162 ~~~~~~~Pg~~~---l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~-~~v 237 (448)
T PLN02562 162 LEKICVLPEQPL---LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQN-PQI 237 (448)
T ss_pred ccccccCCCCCC---CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccC-CCE
Confidence 011 24677764 6667777665432222223455666667777889999999999999888876542 23 689
Q ss_pred EEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcc-cCCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 042753 234 WAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRY-VLTAKQIHELAAALEKTDVDFVYCVREP 312 (473)
Q Consensus 234 ~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~i~~~~~~ 312 (473)
+.|||+.... . . ...+......+.++.+||+.+..+++|||||||.. ..+.+++++++.+|++.+++|||+++..
T Consensus 238 ~~iGpl~~~~-~--~-~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~ 313 (448)
T PLN02562 238 LQIGPLHNQE-A--T-TITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPV 313 (448)
T ss_pred EEecCccccc-c--c-ccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 9999997654 1 0 00010001234567899999777899999999986 6789999999999999999999999764
Q ss_pred CccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHH
Q 042753 313 DERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLL 392 (473)
Q Consensus 313 ~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv 392 (473)
. .+.+|++|.++.. +|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++
T Consensus 314 ~-------~~~l~~~~~~~~~-~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~ 385 (448)
T PLN02562 314 W-------REGLPPGYVERVS-KQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYI 385 (448)
T ss_pred c-------hhhCCHHHHHHhc-cCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHH
Confidence 2 0348888888775 4667779999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 042753 393 VDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRIN 462 (473)
Q Consensus 393 ~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~ 462 (473)
++.+|+|+.+. +++.++|.++|+++|+|+ +|++||++++++++++ ..||||++++++|+++++
T Consensus 386 ~~~~g~g~~~~-----~~~~~~l~~~v~~~l~~~-~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 386 VDVWKIGVRIS-----GFGQKEVEEGLRKVMEDS-GMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred HHHhCceeEeC-----CCCHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 87689998886 479999999999999996 9999999999999876 667999999999999874
No 13
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=5.7e-64 Score=497.35 Aligned_cols=434 Identities=27% Similarity=0.421 Sum_probs=327.8
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHH--HHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCCh--hhHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNR--LLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPA--TRLL 80 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~--L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~--~~~~ 80 (473)
..||+++|+|++||++|++.||++ |++||++|||++++.+..+++..... ...+++..++ +++++. ....
T Consensus 8 ~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~--~~~~~~~~~~----~glp~~~~~~~~ 81 (456)
T PLN02210 8 ETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKP--RRPVDLVFFS----DGLPKDDPRAPE 81 (456)
T ss_pred CCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCC--CCceEEEECC----CCCCCCcccCHH
Confidence 579999999999999999999999 55899999999999887666432210 1246666555 344432 1222
Q ss_pred HHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhcc-CCCCCCCCCCC
Q 042753 81 KFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTD-LPTNDDPDNVD 159 (473)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~ 159 (473)
.+...+.+...+.+.+++++. +|||||+|.+++|+..+|+++|||.+.|+++++..+..+.+.... .+. ....+..
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~~--~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~-~~~~~~~ 158 (456)
T PLN02210 82 TLLKSLNKVGAKNLSKIIEEK--RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSF-PDLEDLN 158 (456)
T ss_pred HHHHHHHHhhhHHHHHHHhcC--CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCC-CcccccC
Confidence 344444445567788889888 899999999999999999999999999999999888776654321 111 1111111
Q ss_pred ccccCCCCCCCCCCCccccchhhhccCCCCCch-HHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEecc
Q 042753 160 ALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDW-DLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAVGP 238 (473)
Q Consensus 160 ~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~vGp 238 (473)
.+..+|+++. +..++++.++... ..... ..+.+.......+.++++|||.++|+.+++.++. . +++++|||
T Consensus 159 ~~~~~Pgl~~---~~~~dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~--~~v~~VGP 230 (456)
T PLN02210 159 QTVELPALPL---LEVRDLPSFMLPS--GGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD-L--KPVIPIGP 230 (456)
T ss_pred CeeeCCCCCC---CChhhCChhhhcC--CchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-c--CCEEEEcc
Confidence 2345777764 5666666654321 11112 2333444455667899999999999999998876 2 47999999
Q ss_pred CCCCCC--cchhhccCCCC--CCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCc
Q 042753 239 VLPPDD--DLVESMCRGGS--SSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDE 314 (473)
Q Consensus 239 l~~~~~--~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 314 (473)
+.+... ........+.. .+..+++|.+|++.++++++|||||||....+.+++++++.+|+.++++|||+++.+.
T Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~- 309 (456)
T PLN02210 231 LVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKE- 309 (456)
T ss_pred cCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCc-
Confidence 975210 00000001100 1234567999999988899999999999989999999999999999999999998642
Q ss_pred cCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHHHH
Q 042753 315 RHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVD 394 (473)
Q Consensus 315 ~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~ 394 (473)
. ...++.|.++...++.++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++
T Consensus 310 ---~---~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~ 383 (456)
T PLN02210 310 ---K---AQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVD 383 (456)
T ss_pred ---c---ccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHH
Confidence 0 1233556666532333556999999999999999999999999999999999999999999999999999997
Q ss_pred HhcceEEeccCC-CCCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 042753 395 QLGVGIRVGEGT-RNIPESDELARLLAQSVDGP--RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRIN 462 (473)
Q Consensus 395 ~~G~G~~l~~~~-~~~~~~~~l~~~i~~~l~~~--~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~ 462 (473)
.+|+|+.+..++ ...++.++|+++|+++|.++ +++|+||++|++..++++.+||||++++++|+++++
T Consensus 384 ~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 384 VFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 689999996311 13689999999999999875 369999999999999999999999999999999875
No 14
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=3.1e-64 Score=495.05 Aligned_cols=430 Identities=28% Similarity=0.471 Sum_probs=324.7
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEE--EeCCCChhhhhhhcc--CCCCCCeeEEEcCCCCC-CCC-CCh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLG--LNVTV--LITQNNLPLLDSLNA--NHPSTSLQSLVLPQPKW-PAG-SPA 76 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~--~~~~~~~~~i~~~~~--~~~~~~~~f~~l~~~~~-~~~-~~~ 76 (473)
-.||+++|+|++||++||+.||+.|+.+| +.||+ ++++.+...+..... ....++++|..+|++.. +.. ...
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 82 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTSR 82 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccccc
Confidence 36999999999999999999999999998 55555 444443322221111 01123699999886521 111 111
Q ss_pred hhH-HHHHHHHHHHhhHHHHHHHhcCC--CCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhcc---CC
Q 042753 77 TRL-LKFMRVLRELHYPALLDWFKSHP--SPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTD---LP 150 (473)
Q Consensus 77 ~~~-~~~~~~~~~~~~~~l~~~l~~~~--~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~---~p 150 (473)
... ..+..... ...+.+.+++++.. ++++|||+|.+++|+..+|+++|||.+.|++++++.+..+.+.... .+
T Consensus 83 ~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~~ 161 (451)
T PLN03004 83 HHHESLLLEILC-FSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTP 161 (451)
T ss_pred cCHHHHHHHHHH-hhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcccccc
Confidence 111 12222233 45556666666541 1459999999999999999999999999999999988887664321 11
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCC
Q 042753 151 TNDDPDNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGH 230 (473)
Q Consensus 151 ~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~ 230 (473)
. .. ..+..+..+|+++. +..++++.+.... .....+.+.+......++.++++|||++||+.+++.+...+..
T Consensus 162 ~-~~-~~~~~~v~iPg~p~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~ 234 (451)
T PLN03004 162 G-KN-LKDIPTVHIPGVPP---MKGSDMPKAVLER--DDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELCF 234 (451)
T ss_pred c-cc-cccCCeecCCCCCC---CChHHCchhhcCC--chHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCC
Confidence 1 00 01112346788875 6777888766432 1223455666667777888999999999999999999765321
Q ss_pred CcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEe
Q 042753 231 DRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVR 310 (473)
Q Consensus 231 ~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 310 (473)
++++.|||+.... . ...+. ...+.++.+|||.++.+++|||||||....+.+++++++.+|+.++++|||+++
T Consensus 235 ~~v~~vGPl~~~~-~----~~~~~--~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r 307 (451)
T PLN03004 235 RNIYPIGPLIVNG-R----IEDRN--DNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVR 307 (451)
T ss_pred CCEEEEeeeccCc-c----ccccc--cchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEc
Confidence 5799999997533 1 00011 112356999999988899999999999999999999999999999999999999
Q ss_pred CCCccCCcc---cCC-CCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccch
Q 042753 311 EPDERHASQ---DCG-VLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQY 386 (473)
Q Consensus 311 ~~~~~~~~~---~~~-~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~ 386 (473)
.+... +. +.. .+|++|.+|...+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+
T Consensus 308 ~~~~~--~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~ 385 (451)
T PLN03004 308 NPPEL--EKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQR 385 (451)
T ss_pred CCccc--cccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccch
Confidence 53100 00 112 3899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHH
Q 042753 387 TNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDR 452 (473)
Q Consensus 387 ~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~ 452 (473)
.||+++++.+|+|+.++.++...++.++|+++|+++|+|+ +|+++|+++++..+.++.+||||++
T Consensus 386 ~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~-~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 386 FNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGEC-PVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred hhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999778999999731122579999999999999996 9999999999999999999999874
No 15
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.2e-63 Score=492.26 Aligned_cols=440 Identities=27% Similarity=0.447 Sum_probs=330.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCCCh-hhhhhhccC--CCCCCeeEEEcCCCCCCCC--CChhh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLG--LNVTVLITQNNL-PLLDSLNAN--HPSTSLQSLVLPQPKWPAG--SPATR 78 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~-~~i~~~~~~--~~~~~~~f~~l~~~~~~~~--~~~~~ 78 (473)
.||+++|+|++||++|++.||+.|+.+| ..|||++++.+. ..+...... ...++++|..+|+...... .....
T Consensus 4 ~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~ 83 (468)
T PLN02207 4 AELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQSV 83 (468)
T ss_pred cEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccccCH
Confidence 6999999999999999999999999998 999999999765 222222110 1123699999984221010 11111
Q ss_pred HHHHHHHHH---HHhhHHHHHHHhcCC---CCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhcc-CCC
Q 042753 79 LLKFMRVLR---ELHYPALLDWFKSHP---SPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTD-LPT 151 (473)
Q Consensus 79 ~~~~~~~~~---~~~~~~l~~~l~~~~---~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~-~p~ 151 (473)
...+...+. ..+.+.+.+++++.. ++++|||+|.+++|+..+|+++|||.+.|++++++.+..+.+.... .+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~~~~ 163 (468)
T PLN02207 84 EAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRHSKD 163 (468)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhccccc
Confidence 122223332 122445666665431 1349999999999999999999999999999999877776554321 111
Q ss_pred CCC-CCCCCccccCCCC-CCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHh-h
Q 042753 152 NDD-PDNVDALVSFPRV-PNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKE-M 228 (473)
Q Consensus 152 ~~~-~~~~~~~~~~p~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~-~ 228 (473)
... ....+.+..+|++ +. +..++++.++.. ... ...+.+......+.+++++|||++||+++++.+... .
T Consensus 164 ~~~~~~~~~~~~~vPgl~~~---l~~~dlp~~~~~---~~~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~ 236 (468)
T PLN02207 164 TSVFVRNSEEMLSIPGFVNP---VPANVLPSALFV---EDG-YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDEQN 236 (468)
T ss_pred cccCcCCCCCeEECCCCCCC---CChHHCcchhcC---Ccc-HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhccC
Confidence 000 0011134567887 34 777778776532 111 344445555677889999999999999999888652 3
Q ss_pred CCCcEEEeccCCCCCCcchhhccCCCC-CCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEE
Q 042753 229 GHDRVWAVGPVLPPDDDLVESMCRGGS-SSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVY 307 (473)
Q Consensus 229 ~~~~~~~vGpl~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 307 (473)
. |+++.|||+.... . ..... ....++++.+|||.++.+++|||||||....+.+++++++.+|+.++++|||
T Consensus 237 ~-p~v~~VGPl~~~~-~-----~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW 309 (468)
T PLN02207 237 Y-PSVYAVGPIFDLK-A-----QPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLW 309 (468)
T ss_pred C-CcEEEecCCcccc-c-----CCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEE
Confidence 3 6899999997643 1 00000 0112367999999988889999999999999999999999999999999999
Q ss_pred EEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchh
Q 042753 308 CVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYT 387 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~ 387 (473)
+++.+. ....+.+|++|.++...++ .+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 310 ~~r~~~----~~~~~~lp~~f~er~~~~g-~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~ 384 (468)
T PLN02207 310 SLRTEE----VTNDDLLPEGFLDRVSGRG-MICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQL 384 (468)
T ss_pred EEeCCC----ccccccCCHHHHhhcCCCe-EEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchh
Confidence 999632 1112458999998887555 55699999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcceEEeccC----CCCCCCHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042753 388 NAQLLVDQLGVGIRVGEG----TRNIPESDELARLLAQSVD--GPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRI 461 (473)
Q Consensus 388 na~rv~~~~G~G~~l~~~----~~~~~~~~~l~~~i~~~l~--~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 461 (473)
||+++++.+|+|+.+..+ ....++.++|.++|+++|. + ++||+||+++++.+++++.+||||++++++|++++
T Consensus 385 Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~-~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~ 463 (468)
T PLN02207 385 NAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDN-NVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDV 463 (468)
T ss_pred hHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 999998778999977411 0134699999999999997 4 49999999999999999999999999999999998
Q ss_pred Hhhc
Q 042753 462 NELK 465 (473)
Q Consensus 462 ~~~~ 465 (473)
...+
T Consensus 464 ~~~~ 467 (468)
T PLN02207 464 IGIK 467 (468)
T ss_pred Hhcc
Confidence 8643
No 16
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.4e-63 Score=491.03 Aligned_cols=431 Identities=27% Similarity=0.448 Sum_probs=323.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCCCC-hhhhhhhccCCCCCCeeEEEcCCCCCCCCCCh-----hh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLT-LGLNVTVLITQNN-LPLLDSLNANHPSTSLQSLVLPQPKWPAGSPA-----TR 78 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~-~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~-----~~ 78 (473)
.||+++|+|++||++|++.||+.|+. +|+.|||++++.+ ...+.... ...++++|..++ ++++.. ..
T Consensus 4 ~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~--~~~~~i~~~~i~----dglp~g~~~~~~~ 77 (455)
T PLN02152 4 PHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNH--NNVENLSFLTFS----DGFDDGVISNTDD 77 (455)
T ss_pred cEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccC--CCCCCEEEEEcC----CCCCCcccccccc
Confidence 49999999999999999999999996 6999999999954 22221111 111358888886 233321 12
Q ss_pred HHHHHHHHHHHhhHHHHHHHhcC--C-CCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCC
Q 042753 79 LLKFMRVLRELHYPALLDWFKSH--P-SPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDP 155 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~--~-~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~ 155 (473)
...+.....+.+.+.+.+++++. + .+++|||+|.+++|+..+|+++|||.+.|++++++.+..+++.+...
T Consensus 78 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~------ 151 (455)
T PLN02152 78 VQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN------ 151 (455)
T ss_pred HHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC------
Confidence 22233333335567777777653 1 14599999999999999999999999999999999888876654211
Q ss_pred CCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccC--CcEEeecchHHhhHHHHHHHHHhhCCCcE
Q 042753 156 DNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKT--SWGIVFNSFAELERVYIDHMKKEMGHDRV 233 (473)
Q Consensus 156 ~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~le~~~~~~~~~~~~~~~~ 233 (473)
.....+|+++. +..++++.++..........+.+.+....... +.++++|||++||+.+++.+.. ..+
T Consensus 152 ---~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~----~~v 221 (455)
T PLN02152 152 ---NSVFEFPNLPS---LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN----IEM 221 (455)
T ss_pred ---CCeeecCCCCC---CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc----CCE
Confidence 11345788765 66777887664321122223444444444332 4699999999999999988855 369
Q ss_pred EEeccCCCCCCcchhhccCCC--CCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeC
Q 042753 234 WAVGPVLPPDDDLVESMCRGG--SSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVRE 311 (473)
Q Consensus 234 ~~vGpl~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 311 (473)
+.|||+.+.. ... ....+. ..+..+.++.+|||.+..+++|||||||....+.+++++++.+|+.++++|||+++.
T Consensus 222 ~~VGPL~~~~-~~~-~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~ 299 (455)
T PLN02152 222 VAVGPLLPAE-IFT-GSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITD 299 (455)
T ss_pred EEEcccCccc-ccc-ccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEec
Confidence 9999997532 100 000010 001223579999999888899999999999999999999999999999999999986
Q ss_pred CCccCC---cccC--CCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccch
Q 042753 312 PDERHA---SQDC--GVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQY 386 (473)
Q Consensus 312 ~~~~~~---~~~~--~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~ 386 (473)
+.-... ..+. -.+|++|.++....+ ++.+|+||.+||+|+++|+|||||||||++||+++|||||++|++.||+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g-~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~ 378 (455)
T PLN02152 300 KLNREAKIEGEEETEIEKIAGFRHELEEVG-MIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQP 378 (455)
T ss_pred CcccccccccccccccccchhHHHhccCCe-EEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccch
Confidence 310000 0000 124788888876544 5569999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042753 387 TNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP-RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRI 461 (473)
Q Consensus 387 ~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~-~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 461 (473)
.||+++++.||+|+.+..++.+.++.++|+++|+++|+++ ..||++|+++++..++++..||||++++++|++++
T Consensus 379 ~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 379 ANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 9999999877888887532133569999999999999865 46999999999999999999999999999999986
No 17
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=3.2e-63 Score=495.13 Aligned_cols=444 Identities=30% Similarity=0.461 Sum_probs=338.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCC----CeEEEEeCCCChh----hhhhhccC--CCCCCeeEEEcCCCCCCCCCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLG----LNVTVLITQNNLP----LLDSLNAN--HPSTSLQSLVLPQPKWPAGSP 75 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rG----h~Vt~~~~~~~~~----~i~~~~~~--~~~~~~~f~~l~~~~~~~~~~ 75 (473)
.||+++|+|++||++|++.||+.|+.|| +.|||++++.+.. .+...... ....+++|..+|++. +++
T Consensus 4 ~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~p~ 80 (480)
T PLN00164 4 PTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE---PPT 80 (480)
T ss_pred CEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC---CCC
Confidence 4999999999999999999999999996 7999999886532 33332211 112258999988642 221
Q ss_pred h-hhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCC
Q 042753 76 A-TRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDD 154 (473)
Q Consensus 76 ~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~ 154 (473)
. +....+...+...+.+.+.+++++...+++|||+|.+++|+..+|+++|||++.|+++++..+..+.+.....-....
T Consensus 81 ~~e~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~ 160 (480)
T PLN00164 81 DAAGVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDEEVAV 160 (480)
T ss_pred ccccHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhcccccC
Confidence 1 122233332333667778888877532469999999999999999999999999999999988877665321100000
Q ss_pred -CCCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhh-----
Q 042753 155 -PDNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEM----- 228 (473)
Q Consensus 155 -~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~----- 228 (473)
......+..+|+++. +...+++.+.... .......+........+++++++|||++||+.+++.++...
T Consensus 161 ~~~~~~~~~~iPGlp~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~ 235 (480)
T PLN00164 161 EFEEMEGAVDVPGLPP---VPASSLPAPVMDK--KSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCTPGR 235 (480)
T ss_pred cccccCcceecCCCCC---CChHHCCchhcCC--CcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccccccC
Confidence 000012345777765 6677777654322 11223344444556678899999999999999999987632
Q ss_pred -CCCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEE
Q 042753 229 -GHDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVY 307 (473)
Q Consensus 229 -~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 307 (473)
. ++++.|||+.... . .+ .....++++.+|||.+..+++|||||||....+.+++.+++.+|+.++++|||
T Consensus 236 ~~-~~v~~vGPl~~~~-~------~~-~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flW 306 (480)
T PLN00164 236 PA-PTVYPIGPVISLA-F------TP-PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLW 306 (480)
T ss_pred CC-CceEEeCCCcccc-c------cC-CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEE
Confidence 2 4799999997532 1 00 01234578999999988899999999999889999999999999999999999
Q ss_pred EEeCCCccCC----c-ccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCccc
Q 042753 308 CVREPDERHA----S-QDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMD 382 (473)
Q Consensus 308 ~~~~~~~~~~----~-~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~ 382 (473)
+++.+..... + ...+.+|++|.++...+++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 307 v~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~ 386 (480)
T PLN00164 307 VLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLY 386 (480)
T ss_pred EEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCcc
Confidence 9985320000 0 0112488999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHhcceEEeccCC--CCCCCHHHHHHHHHHHhCCc----HHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 042753 383 ADQYTNAQLLVDQLGVGIRVGEGT--RNIPESDELARLLAQSVDGP----RRERLKARELSGAALSAVVKGGSSDRDLND 456 (473)
Q Consensus 383 ~DQ~~na~rv~~~~G~G~~l~~~~--~~~~~~~~l~~~i~~~l~~~----~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~ 456 (473)
+||+.||+++++.+|+|+.+..++ .+.+++++|.++|+++|.++ +.+|++|+++++++++++.+||||++++++
T Consensus 387 ~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~ 466 (480)
T PLN00164 387 AEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQR 466 (480)
T ss_pred ccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 999999999877789999986210 12479999999999999763 468999999999999999999999999999
Q ss_pred HHHHHHhhcc
Q 042753 457 FIKRINELKS 466 (473)
Q Consensus 457 ~~~~~~~~~~ 466 (473)
|++.+++.+-
T Consensus 467 ~v~~~~~~~~ 476 (480)
T PLN00164 467 LAREIRHGAV 476 (480)
T ss_pred HHHHHHhccC
Confidence 9999988643
No 18
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=5.4e-63 Score=487.70 Aligned_cols=424 Identities=24% Similarity=0.369 Sum_probs=327.3
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChh-h-----
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPAT-R----- 78 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~-~----- 78 (473)
..||+++|+|++||++|++.||+.|+++|++|||++++.+...+..... ..++++|..++++..+++++.. .
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~--~~~~i~~~~i~lP~~dGLP~g~e~~~~l~ 81 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL--FPDSIVFEPLTLPPVDGLPFGAETASDLP 81 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc--CCCceEEEEecCCCcCCCCCcccccccch
Confidence 3699999999999999999999999999999999999988766654321 1125888777665445665431 1
Q ss_pred ---HHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCC
Q 042753 79 ---LLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDP 155 (473)
Q Consensus 79 ---~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~ 155 (473)
...+..... .+.+.+.++++.. +|||||+|. ++|+..+|+++|||++.|++++++.+..+.+... ..
T Consensus 82 ~~~~~~~~~a~~-~l~~~l~~~L~~~--~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~------~~ 151 (446)
T PLN00414 82 NSTKKPIFDAMD-LLRDQIEAKVRAL--KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA------EL 151 (446)
T ss_pred hhHHHHHHHHHH-HHHHHHHHHHhcC--CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh------hc
Confidence 112334444 6677888888877 899999995 7899999999999999999999988777654211 00
Q ss_pred CCCCccccCCCCCCC-CCCCcccc--chhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCc
Q 042753 156 DNVDALVSFPRVPNC-PVYPWYQI--SHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDR 232 (473)
Q Consensus 156 ~~~~~~~~~p~l~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~ 232 (473)
...+|+++.. +.+...+. +.++.. ....+.+......+++++++|||++||+.+++.+...++ ++
T Consensus 152 -----~~~~pg~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~-~~ 219 (446)
T PLN00414 152 -----GFPPPDYPLSKVALRGHDANVCSLFAN------SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQ-RK 219 (446)
T ss_pred -----CCCCCCCCCCcCcCchhhcccchhhcc------cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcC-CC
Confidence 0124566531 11222221 122210 123444555667778999999999999999999987665 68
Q ss_pred EEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 042753 233 VWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREP 312 (473)
Q Consensus 233 ~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 312 (473)
++.|||+.... . ...+ ....+++.+|||.+..++||||||||......+++.++..+|+.++.+|+|++..+
T Consensus 220 v~~VGPl~~~~-~----~~~~---~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~ 291 (446)
T PLN00414 220 VLLTGPMLPEP-Q----NKSG---KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPP 291 (446)
T ss_pred eEEEcccCCCc-c----cccC---cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 99999997543 2 0001 12335799999999999999999999999999999999999999999999999864
Q ss_pred CccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHH
Q 042753 313 DERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLL 392 (473)
Q Consensus 313 ~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv 392 (473)
... ....+.+|++|.+++..+++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++
T Consensus 292 ~~~--~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~ 369 (446)
T PLN00414 292 KGS--STVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLL 369 (446)
T ss_pred CCc--ccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHH
Confidence 200 011246999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc----HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcc
Q 042753 393 VDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP----RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINELKS 466 (473)
Q Consensus 393 ~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~----~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~ 466 (473)
++.+|+|+.+.+++.+.+++++|+++++++|.++ +.+|++|+++++.+. ++|||+ ..+++|++++++...
T Consensus 370 ~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~s-s~l~~~v~~~~~~~~ 443 (446)
T PLN00414 370 TEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLS-GYADKFVEALENEVN 443 (446)
T ss_pred HHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcH-HHHHHHHHHHHHhcc
Confidence 8778999999731112589999999999999764 359999999999974 556633 448999999977654
No 19
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1e-62 Score=493.41 Aligned_cols=443 Identities=26% Similarity=0.431 Sum_probs=328.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCCChhhhh---hhccC---CCCCCeeEEEcCCCCCCCCCChh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLG--LNVTVLITQNNLPLLD---SLNAN---HPSTSLQSLVLPQPKWPAGSPAT 77 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~i~---~~~~~---~~~~~~~f~~l~~~~~~~~~~~~ 77 (473)
+||+++|+|++||++|++.||+.|+.|| ..|||++++.+...+. ..... ...++++|..+|++...... ..
T Consensus 3 ~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~-~~ 81 (481)
T PLN02554 3 IELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTE-DP 81 (481)
T ss_pred eEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCccc-ch
Confidence 6899999999999999999999999998 8899999987754321 11110 01235999998865321100 11
Q ss_pred hHHHHHHHHHHHhhHHHHHHHhcC---CCCC-cEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCC--
Q 042753 78 RLLKFMRVLRELHYPALLDWFKSH---PSPP-VAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPT-- 151 (473)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~l~~~---~~~p-D~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~-- 151 (473)
.+..+...+...+.+.+.+++.+. +.+| +|||+|.+++|+..+|+++|||++.|++++++.++.+.+.......
T Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~~~~ 161 (481)
T PLN02554 82 TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYDEKK 161 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhccccc
Confidence 222233333334455666665431 1133 8999999999999999999999999999999988887765432100
Q ss_pred C--CCCCCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHh--
Q 042753 152 N--DDPDNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKE-- 227 (473)
Q Consensus 152 ~--~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~-- 227 (473)
. ........+..+|+++. .++..+++..... ......+.+......+++++++|||.+||+.+.+.+.+.
T Consensus 162 ~~~~~~~~~~~~v~iPgl~~--pl~~~dlp~~~~~----~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~~~ 235 (481)
T PLN02554 162 YDVSELEDSEVELDVPSLTR--PYPVKCLPSVLLS----KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGSSG 235 (481)
T ss_pred cCccccCCCCceeECCCCCC--CCCHHHCCCcccC----HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhccc
Confidence 0 01111112345777632 1555566654421 122445555666778899999999999999999888763
Q ss_pred hCCCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEE
Q 042753 228 MGHDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVY 307 (473)
Q Consensus 228 ~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 307 (473)
.. |+++.|||+.....+ .. + .....++++.+|++.++.+++|||||||....+.+++++++.+|++++++|||
T Consensus 236 ~~-~~v~~vGpl~~~~~~----~~-~-~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW 308 (481)
T PLN02554 236 DL-PPVYPVGPVLHLENS----GD-D-SKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLW 308 (481)
T ss_pred CC-CCEEEeCCCcccccc----cc-c-cccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 23 589999999533201 00 0 00224568999999987889999999999889999999999999999999999
Q ss_pred EEeCCCcc-------CCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCc
Q 042753 308 CVREPDER-------HASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWP 380 (473)
Q Consensus 308 ~~~~~~~~-------~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P 380 (473)
+++.+... ......+.+|++|.++....+ ++.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g-~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P 387 (481)
T PLN02554 309 SLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIG-KVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWP 387 (481)
T ss_pred EEcCCcccccccccccccchhhhCChHHHHHhccCc-eEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecC
Confidence 99763100 000001236899998886544 5569999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHhcceEEeccC--------CCCCCCHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHhcCCChH
Q 042753 381 MDADQYTNAQLLVDQLGVGIRVGEG--------TRNIPESDELARLLAQSVD-GPRRERLKARELSGAALSAVVKGGSSD 451 (473)
Q Consensus 381 ~~~DQ~~na~rv~~~~G~G~~l~~~--------~~~~~~~~~l~~~i~~~l~-~~~~~~~~a~~~~~~~~~~~~~~gs~~ 451 (473)
+++||+.||+++.+.+|+|+.+++. +...+++++|+++|+++|+ |+ +||+||+++++.+++++.+||||+
T Consensus 388 ~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~-~~r~~a~~l~~~~~~av~~gGss~ 466 (481)
T PLN02554 388 LYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDS-DVRKRVKEMSEKCHVALMDGGSSH 466 (481)
T ss_pred ccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhcCCChHH
Confidence 9999999996654478999998620 1246899999999999997 65 999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 042753 452 RDLNDFIKRINEL 464 (473)
Q Consensus 452 ~~~~~~~~~~~~~ 464 (473)
+++++|+++++++
T Consensus 467 ~~l~~lv~~~~~~ 479 (481)
T PLN02554 467 TALKKFIQDVTKN 479 (481)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999875
No 20
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.5e-62 Score=487.99 Aligned_cols=435 Identities=26% Similarity=0.424 Sum_probs=329.5
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKF 82 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 82 (473)
..||+++|+|++||++|++.||++|+.| ||+|||++++.+...++.... .++++|..+|....++.........+
T Consensus 10 ~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~---~~gi~fv~lp~~~p~~~~~~~~~~~~ 86 (459)
T PLN02448 10 SCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK---PDNIRFATIPNVIPSELVRAADFPGF 86 (459)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC---CCCEEEEECCCCCCCccccccCHHHH
Confidence 6899999999999999999999999999 999999999998877766421 23699998884211111111223333
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccC-----CCCCCCC-
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDL-----PTNDDPD- 156 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~-----p~~~~~~- 156 (473)
...+.+...+.+.+++++...++||||+|.+++|+..+|+++|||+|.++++++..++.+.+..... |. ....
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~ 165 (459)
T PLN02448 87 LEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPV-ELSES 165 (459)
T ss_pred HHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCC-ccccc
Confidence 3443334566777777764226799999999999999999999999999999997777655543211 11 0000
Q ss_pred CCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEe
Q 042753 157 NVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAV 236 (473)
Q Consensus 157 ~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~v 236 (473)
.+.....+|+++. +...+++.++... .....+.+.+......++.++++|||++||+.+++.+...++ ++++.|
T Consensus 166 ~~~~~~~iPg~~~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~-~~~~~i 239 (459)
T PLN02448 166 GEERVDYIPGLSS---TRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFP-FPVYPI 239 (459)
T ss_pred cCCccccCCCCCC---CChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcC-CceEEe
Confidence 0000113566553 5566666654322 222234455555566677899999999999999999987666 689999
Q ss_pred ccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccC
Q 042753 237 GPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERH 316 (473)
Q Consensus 237 Gpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 316 (473)
||+.+.. ...+ ...+......+.++.+|++.+..+++|||||||....+.+++++++.+|++.+++|||+++.+.
T Consensus 240 GP~~~~~-~~~~-~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~--- 314 (459)
T PLN02448 240 GPSIPYM-ELKD-NSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEA--- 314 (459)
T ss_pred cCccccc-ccCC-CccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCch---
Confidence 9997643 1000 0000000112347999999988899999999999888899999999999999999999887531
Q ss_pred CcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHh
Q 042753 317 ASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQL 396 (473)
Q Consensus 317 ~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~ 396 (473)
.++.++.. .|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.|
T Consensus 315 ---------~~~~~~~~-~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~ 384 (459)
T PLN02448 315 ---------SRLKEICG-DMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDW 384 (459)
T ss_pred ---------hhHhHhcc-CCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHh
Confidence 23333332 46677799999999999999999999999999999999999999999999999999999778
Q ss_pred cceEEeccC--CCCCCCHHHHHHHHHHHhCCc----HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 042753 397 GVGIRVGEG--TRNIPESDELARLLAQSVDGP----RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 397 G~G~~l~~~--~~~~~~~~~l~~~i~~~l~~~----~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~ 464 (473)
|+|+.+..+ +...+++++|+++|+++|+++ ++||++|+++++++++++.+||||++++++|++++++.
T Consensus 385 g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~~ 458 (459)
T PLN02448 385 KIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQG 458 (459)
T ss_pred CceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Confidence 999998621 123579999999999999752 58999999999999999999999999999999999864
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.7e-61 Score=482.51 Aligned_cols=444 Identities=30% Similarity=0.471 Sum_probs=320.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCC---eEEEEeCCCChh-hhhhhcc--CCCCCCeeEEEcCCCCCC-CC---C-
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGL---NVTVLITQNNLP-LLDSLNA--NHPSTSLQSLVLPQPKWP-AG---S- 74 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh---~Vt~~~~~~~~~-~i~~~~~--~~~~~~~~f~~l~~~~~~-~~---~- 74 (473)
.||+++|+|++||++|++.||+.|+.||. .||+++++.+.. .....+. ....++++|..+|++... +. .
T Consensus 4 ~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~~~ 83 (475)
T PLN02167 4 AELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELFVK 83 (475)
T ss_pred cEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcccccccc
Confidence 59999999999999999999999999983 567777553321 1111110 011236999999865311 00 0
Q ss_pred -ChhhHHHHHHHHHHHhhHHHHHHHhcC---CC-CCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhcc-
Q 042753 75 -PATRLLKFMRVLRELHYPALLDWFKSH---PS-PPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTD- 148 (473)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~-~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~- 148 (473)
....+..+...+...+.+.+.+++.+. .. +++|||+|.+++|+..+|+++|||.+.|++++++.++.+.+....
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~~~ 163 (475)
T PLN02167 84 ASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPERH 163 (475)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHHhc
Confidence 001112222222222333444443321 01 349999999999999999999999999999999888776654321
Q ss_pred CCCCC-C--CCCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHH
Q 042753 149 LPTND-D--PDNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMK 225 (473)
Q Consensus 149 ~p~~~-~--~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~ 225 (473)
.+. . . ....+.+..+|+++.. +...+++.+.... ...+.+.+......+++++++|||++||+.+++.+.
T Consensus 164 ~~~-~~~~~~~~~~~~~~iPgl~~~--l~~~dlp~~~~~~----~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 236 (475)
T PLN02167 164 RKT-ASEFDLSSGEEELPIPGFVNS--VPTKVLPPGLFMK----ESYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFS 236 (475)
T ss_pred ccc-ccccccCCCCCeeECCCCCCC--CChhhCchhhhCc----chHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHH
Confidence 011 0 0 0011133457887421 4555665543321 123344455566778899999999999999999986
Q ss_pred HhhC-CCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCc
Q 042753 226 KEMG-HDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVD 304 (473)
Q Consensus 226 ~~~~-~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~ 304 (473)
.... .|+++.|||+.... . ....+ .....++++.+|++.++.+++|||||||....+.+++.+++.+|+.++++
T Consensus 237 ~~~~~~p~v~~vGpl~~~~-~---~~~~~-~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~ 311 (475)
T PLN02167 237 RLPENYPPVYPVGPILSLK-D---RTSPN-LDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCR 311 (475)
T ss_pred hhcccCCeeEEeccccccc-c---ccCCC-CCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCc
Confidence 5311 14799999997643 1 00001 00123367999999988889999999999888999999999999999999
Q ss_pred EEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCccccc
Q 042753 305 FVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDAD 384 (473)
Q Consensus 305 ~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~D 384 (473)
|||+++.+... .....+.+|++|.+++..+++ +.+|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 312 flw~~~~~~~~-~~~~~~~lp~~~~er~~~rg~-v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~D 389 (475)
T PLN02167 312 FLWSIRTNPAE-YASPYEPLPEGFMDRVMGRGL-VCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAE 389 (475)
T ss_pred EEEEEecCccc-ccchhhhCChHHHHHhccCee-eeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecccccc
Confidence 99999854200 000113489999998877664 4599999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHhcceEEeccC---C-CCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 042753 385 QYTNAQLLVDQLGVGIRVGEG---T-RNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKR 460 (473)
Q Consensus 385 Q~~na~rv~~~~G~G~~l~~~---~-~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~ 460 (473)
|+.||+++.+.+|+|+.+..+ + ...+++++|.++|+++|.+++.|+++|+++++.+++++.+||||++++++|+++
T Consensus 390 Q~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~ 469 (475)
T PLN02167 390 QQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDD 469 (475)
T ss_pred chhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999998765578999998631 0 135799999999999997544899999999999999999999999999999999
Q ss_pred HHh
Q 042753 461 INE 463 (473)
Q Consensus 461 ~~~ 463 (473)
+++
T Consensus 470 i~~ 472 (475)
T PLN02167 470 LLG 472 (475)
T ss_pred HHh
Confidence 876
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=9.8e-51 Score=408.03 Aligned_cols=410 Identities=17% Similarity=0.189 Sum_probs=280.6
Q ss_pred CccEEEEE-cCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCC------C---C
Q 042753 4 AGAHILVY-PFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWP------A---G 73 (473)
Q Consensus 4 ~~~~Il~~-~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~------~---~ 73 (473)
..+||+.+ |.++.+|+.-+.+|+++|++|||+||++++.... ..... ...+++.+.++..... . .
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YYASH----LCGNITEIDASLSVEYFKKLVKSSAVF 93 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-ccccC----CCCCEEEEEcCCChHHHHHHHhhhhHH
Confidence 36789855 8899999999999999999999999999875321 11100 0124555554321100 0 0
Q ss_pred CC------h-h----hHHHHHHHHHHHh-hHHHHHHHh--cCCCCCcEEEeCCCcchHHHHHHHh-CCCcEEEecchHHH
Q 042753 74 SP------A-T----RLLKFMRVLRELH-YPALLDWFK--SHPSPPVAILSDFFLGWTQGLAAEL-GLPRVVFSPSGAFA 138 (473)
Q Consensus 74 ~~------~-~----~~~~~~~~~~~~~-~~~l~~~l~--~~~~~pD~VV~D~~~~~~~~~A~~~-giP~v~~~~~~~~~ 138 (473)
.. . . ....+...+...+ .+.+.++|+ +. ++|+||+|.+..|++.+|+.+ ++|.|.++++....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~--kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~ 171 (507)
T PHA03392 94 RKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNN--KFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLA 171 (507)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCC--ceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCch
Confidence 00 0 0 0011122233222 566788887 55 899999998888999999999 99998888765543
Q ss_pred HHHHHhhhccCCCCCCCCCCCccccCCCC----CCCCCCCccccchhhhc------cCCCCCchHHHHHHh--------h
Q 042753 139 LSVSFAMWTDLPTNDDPDNVDALVSFPRV----PNCPVYPWYQISHLYRT------LKEGDPDWDLHRSNM--------M 200 (473)
Q Consensus 139 ~~~~~~~~~~~p~~~~~~~~~~~~~~p~l----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--------~ 200 (473)
.... .....|. .+.++|.+ ...+++..|....+... ........++..+.. .
T Consensus 172 ~~~~--~~gg~p~--------~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~ 241 (507)
T PHA03392 172 ENFE--TMGAVSR--------HPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRE 241 (507)
T ss_pred hHHH--hhccCCC--------CCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHH
Confidence 2221 1111111 23445543 33344433322211100 000000111112221 1
Q ss_pred hccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEe
Q 042753 201 ANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCF 280 (473)
Q Consensus 201 ~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~ 280 (473)
...+...+++|+...++ +.+ .++ |++++|||+..+. . ...++++++.+|++. +++++|||||
T Consensus 242 l~~~~~l~lvns~~~~d-----~~r-p~~-p~v~~vGgi~~~~-~---------~~~~l~~~l~~fl~~-~~~g~V~vS~ 303 (507)
T PHA03392 242 LRNRVQLLFVNVHPVFD-----NNR-PVP-PSVQYLGGLHLHK-K---------PPQPLDDYLEEFLNN-STNGVVYVSF 303 (507)
T ss_pred HHhCCcEEEEecCcccc-----CCC-CCC-CCeeeecccccCC-C---------CCCCCCHHHHHHHhc-CCCcEEEEEC
Confidence 11122344555554444 333 466 8999999997643 1 014578899999998 4568999999
Q ss_pred CCccc---CCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccce
Q 042753 281 GSRYV---LTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAF 357 (473)
Q Consensus 281 Gs~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ 357 (473)
||... .+.++++.+++++++.+++|||+++... . ...+ ++|+++.+|+||.+||+|+++++|
T Consensus 304 GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~----~--~~~~---------p~Nv~i~~w~Pq~~lL~hp~v~~f 368 (507)
T PHA03392 304 GSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV----E--AINL---------PANVLTQKWFPQRAVLKHKNVKAF 368 (507)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc----C--cccC---------CCceEEecCCCHHHHhcCCCCCEE
Confidence 99853 5788999999999999999999998642 0 0123 479999999999999999999999
Q ss_pred eeccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 042753 358 LTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELS 437 (473)
Q Consensus 358 ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~ 437 (473)
|||||+||++||+++|||||++|+++||+.||+|+++. |+|+.++ ..+++.++|.++|+++++|+ +|+++|++++
T Consensus 369 ItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~-G~G~~l~---~~~~t~~~l~~ai~~vl~~~-~y~~~a~~ls 443 (507)
T PHA03392 369 VTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVEL-GIGRALD---TVTVSAAQLVLAIVDVIENP-KYRKNLKELR 443 (507)
T ss_pred EecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHc-CcEEEec---cCCcCHHHHHHHHHHHhCCH-HHHHHHHHHH
Confidence 99999999999999999999999999999999999955 9999999 88999999999999999997 9999999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhc-cCCCcc
Q 042753 438 GAALSAVVKGGSSDRDLNDFIKRINELK-SGKNLT 471 (473)
Q Consensus 438 ~~~~~~~~~~gs~~~~~~~~~~~~~~~~-~~~~~~ 471 (473)
+.+++ ++-.+.++++ +++|++.++. ++++|+
T Consensus 444 ~~~~~--~p~~~~~~av-~~iE~v~r~~~g~~~lr 475 (507)
T PHA03392 444 HLIRH--QPMTPLHKAI-WYTEHVIRNKHGNTSLK 475 (507)
T ss_pred HHHHh--CCCCHHHHHH-HHHHHHHhCCCCccccc
Confidence 99985 2334456555 6677888887 777664
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.9e-51 Score=420.50 Aligned_cols=403 Identities=24% Similarity=0.323 Sum_probs=221.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCC-CCCCC---Ch---hh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPK-WPAGS---PA---TR 78 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~-~~~~~---~~---~~ 78 (473)
.|||++|+ ++||+.++.+|+++|++|||+||++++... ..+.... ...+++..++.+. .+... .. ..
T Consensus 1 ~kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (500)
T PF00201_consen 1 GKVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPS-SSLNPSK----PSNIRFETYPDPYPEEEFEEIFPEFISKF 74 (500)
T ss_dssp ------------SHHHHHHHHHHHHHH-TTSEEEHHHHH-HT----------S-CCEEEE-----TT------TTHHHHH
T ss_pred CEEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecc-ccccccc----ccceeeEEEcCCcchHHHhhhhHHHHHHH
Confidence 47888886 789999999999999999999999987532 1222111 1245565555331 11111 10 00
Q ss_pred HH------HHHHHHH------HHh---------hHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHH
Q 042753 79 LL------KFMRVLR------ELH---------YPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAF 137 (473)
Q Consensus 79 ~~------~~~~~~~------~~~---------~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~ 137 (473)
+. .+...+. ... ++.+.+.+++. ++|++|+|.+..|+..+|+.++||.+.+.+....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~--~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~ 152 (500)
T PF00201_consen 75 FSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE--KFDLVISDAFDPCGLALAHYLGIPVIIISSSTPM 152 (500)
T ss_dssp HHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH--HHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSC
T ss_pred hhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--ccccceEeeccchhHHHHHHhcCCeEEEeccccc
Confidence 00 0111110 000 12233445555 7999999999889999999999999876543321
Q ss_pred HHHHHHhhhccCCCCCCCCCCCccccCCC----CCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccC-----CcEE
Q 042753 138 ALSVSFAMWTDLPTNDDPDNVDALVSFPR----VPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKT-----SWGI 208 (473)
Q Consensus 138 ~~~~~~~~~~~~p~~~~~~~~~~~~~~p~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 208 (473)
... ... .......+.++|. ++..+++..|....+.. . ..+.+.+....... ..+.
T Consensus 153 ~~~--------~~~--~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~-~-----~~~~~~~~~~~~~~~~~~~~~~~ 216 (500)
T PF00201_consen 153 YDL--------SSF--SGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFY-L-----YFRFIFRYFFSPQDKLYKKYFGF 216 (500)
T ss_dssp SCC--------TCC--TSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHH-H-----HHHHHHHHGGGS-TTS-EEESS-
T ss_pred chh--------hhh--ccCCCCChHHhccccccCCCccchhhhhhhhhhh-h-----hhccccccchhhHHHHHhhhccc
Confidence 000 000 0001111233333 22333333222111110 0 11111111111100 1111
Q ss_pred eecchHHh-h---------HHHHHHHHHhhCCCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEE
Q 042753 209 VFNSFAEL-E---------RVYIDHMKKEMGHDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYV 278 (473)
Q Consensus 209 ~~~s~~~l-e---------~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~v 278 (473)
.. +..++ . ...++++++.. |++.+||++.... + .++++++++|++..+++++|||
T Consensus 217 ~~-~~~~~~~~~~l~l~ns~~~ld~prp~~--p~v~~vGgl~~~~-~-----------~~l~~~~~~~~~~~~~~~vv~v 281 (500)
T PF00201_consen 217 PF-SFRELLSNASLVLINSHPSLDFPRPLL--PNVVEVGGLHIKP-A-----------KPLPEELWNFLDSSGKKGVVYV 281 (500)
T ss_dssp GG-GCHHHHHHHHHCCSSTEEE----HHHH--CTSTTGCGC-S----------------TCHHHHHHHTSTTTTTEEEEE
T ss_pred cc-ccHHHHHHHHHHhhhccccCcCCcchh--hcccccCcccccc-c-----------cccccccchhhhccCCCCEEEE
Confidence 11 11111 1 11233444433 5899999987765 4 5688999999997668899999
Q ss_pred EeCCccc-CCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccce
Q 042753 279 CFGSRYV-LTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAF 357 (473)
Q Consensus 279 s~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ 357 (473)
||||... .+.+..+.++++|++.+++|||++++.. ...+| +|+++.+|+||.+||+|+++++|
T Consensus 282 sfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~-------~~~l~---------~n~~~~~W~PQ~~lL~hp~v~~f 345 (500)
T PF00201_consen 282 SFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEP-------PENLP---------KNVLIVKWLPQNDLLAHPRVKLF 345 (500)
T ss_dssp E-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSH-------GCHHH---------TTEEEESS--HHHHHTSTTEEEE
T ss_pred ecCcccchhHHHHHHHHHHHHhhCCCcccccccccc-------ccccc---------ceEEEeccccchhhhhcccceee
Confidence 9999975 4555588899999999999999998742 12223 78899999999999999999999
Q ss_pred eeccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 042753 358 LTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELS 437 (473)
Q Consensus 358 ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~ 437 (473)
|||||+||++||+++|||||++|+++||+.||+++++. |+|+.++ ..++|.++|.++|+++|+|+ +|++||++++
T Consensus 346 itHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~-G~g~~l~---~~~~~~~~l~~ai~~vl~~~-~y~~~a~~ls 420 (500)
T PF00201_consen 346 ITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEK-GVGVVLD---KNDLTEEELRAAIREVLENP-SYKENAKRLS 420 (500)
T ss_dssp EES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHT-TSEEEEG---GGC-SHHHHHHHHHHHHHSH-HHHHHHHHHH
T ss_pred eeccccchhhhhhhccCCccCCCCcccCCccceEEEEE-eeEEEEE---ecCCcHHHHHHHHHHHHhhh-HHHHHHHHHH
Confidence 99999999999999999999999999999999999955 9999999 89999999999999999997 9999999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhccCCCcc
Q 042753 438 GAALSAVVKGGSSDRDLNDFIKRINELKSGKNLT 471 (473)
Q Consensus 438 ~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~ 471 (473)
+.+++. +-. ..+.+-.++|++.++.++.+|+
T Consensus 421 ~~~~~~--p~~-p~~~~~~~ie~v~~~~~~~~l~ 451 (500)
T PF00201_consen 421 SLFRDR--PIS-PLERAVWWIEYVARHGGAPHLR 451 (500)
T ss_dssp HTTT------------------------------
T ss_pred HHHhcC--CCC-HHHHHHHHHHHHHhcCCCcccC
Confidence 999863 223 3455667788888887766654
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.1e-43 Score=352.02 Aligned_cols=370 Identities=18% Similarity=0.197 Sum_probs=252.7
Q ss_pred EcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCC-CCCC-------hhhHHHH
Q 042753 11 YPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWP-AGSP-------ATRLLKF 82 (473)
Q Consensus 11 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~-~~~~-------~~~~~~~ 82 (473)
+.+|++||++|+++||++|.+|||+|+|++++.+.+.+++. |+.|..++..... .... ...+..+
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA-------GAEFVLYGSALPPPDNPPENTEEEPIDIIEKL 73 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc-------CCEEEecCCcCccccccccccCcchHHHHHHH
Confidence 36799999999999999999999999999999999888876 6888877643211 1111 0111122
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCCccc
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVDALV 162 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 162 (473)
..... ...+.+.+++++. +||+||+|.+++++..+|+++|||+|.+++..... . .+. .
T Consensus 74 ~~~~~-~~~~~l~~~~~~~--~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~--~-----~~~------------~ 131 (392)
T TIGR01426 74 LDEAE-DVLPQLEEAYKGD--RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN--E-----EFE------------E 131 (392)
T ss_pred HHHHH-HHHHHHHHHhcCC--CCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc--c-----ccc------------c
Confidence 22222 2334566667777 99999999998899999999999999986543210 0 000 0
Q ss_pred cCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhc------------cCCcEEeecchHHhhHHHHHHHHHhhCC
Q 042753 163 SFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMAN------------KTSWGIVFNSFAELERVYIDHMKKEMGH 230 (473)
Q Consensus 163 ~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~s~~~le~~~~~~~~~~~~~ 230 (473)
..+.+............... ....+.+.+..... ......+..+ ++.+++....|+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~-----~~~l~~~~~~~~- 199 (392)
T TIGR01426 132 MVSPAGEGSAEEGAIAERGL------AEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYT-----PKAFQPAGETFD- 199 (392)
T ss_pred cccccchhhhhhhccccchh------HHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeC-----ChHhCCCccccC-
Confidence 00000000000000000000 00000011110000 0000011111 233333344577
Q ss_pred CcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEe
Q 042753 231 DRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVR 310 (473)
Q Consensus 231 ~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 310 (473)
++++++||+.... . . ...|.....++++||||+||........++.+++++.+.+.+++|.++
T Consensus 200 ~~~~~~Gp~~~~~-~------------~----~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g 262 (392)
T TIGR01426 200 DSFTFVGPCIGDR-K------------E----DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVG 262 (392)
T ss_pred CCeEEECCCCCCc-c------------c----cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEEC
Confidence 8899999987654 2 0 112555546789999999998766667888999999999999999987
Q ss_pred CCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHH
Q 042753 311 EPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQ 390 (473)
Q Consensus 311 ~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 390 (473)
... + .+.+.. .++|+.+.+|+||.++|+++++ +|||||+||++||+++|+|+|++|...||+.||+
T Consensus 263 ~~~----~--~~~~~~------~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~ 328 (392)
T TIGR01426 263 RGV----D--PADLGE------LPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTAR 328 (392)
T ss_pred CCC----C--hhHhcc------CCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHH
Confidence 642 0 011110 2468899999999999999996 9999999999999999999999999999999999
Q ss_pred HHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042753 391 LLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRI 461 (473)
Q Consensus 391 rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 461 (473)
+++ ++|+|+.+. ..++++++|.++|+++++|+ +|+++++++++.++. .++.+.+++.+++.+
T Consensus 329 ~l~-~~g~g~~l~---~~~~~~~~l~~ai~~~l~~~-~~~~~~~~l~~~~~~----~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 329 RIA-ELGLGRHLP---PEEVTAEKLREAVLAVLSDP-RYAERLRKMRAEIRE----AGGARRAADEIEGFL 390 (392)
T ss_pred HHH-HCCCEEEec---cccCCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHH----cCCHHHHHHHHHHhh
Confidence 999 559999998 78899999999999999997 999999999999963 355777777776654
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=2.6e-43 Score=351.03 Aligned_cols=373 Identities=17% Similarity=0.103 Sum_probs=246.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCC----CCC-------
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWP----AGS------- 74 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~----~~~------- 74 (473)
|||+|++.|+.||++|+++||++|++|||+|+|++++.+...++.. |++|..++..... ...
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~-------G~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA-------GLEFVPVGGDPDELLASPERNAGLLLL 73 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc-------CCceeeCCCCHHHHHhhhhhccccccc
Confidence 6999999999999999999999999999999999999888888765 7888877642100 000
Q ss_pred ChhhH----HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCC
Q 042753 75 PATRL----LKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLP 150 (473)
Q Consensus 75 ~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p 150 (473)
..... ..+..... .....+.+.+++. +||+||+|.+.+++..+|+++|||+|.+++.+......
T Consensus 74 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~--------- 141 (401)
T cd03784 74 GPGLLLGALRLLRREAE-AMLDDLVAAARDW--GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSA--------- 141 (401)
T ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHhccc--CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCcccc---------
Confidence 00111 11222222 3334455556667 99999999988889999999999999998765421000
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEee------cchHHh--hHHHHH
Q 042753 151 TNDDPDNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVF------NSFAEL--ERVYID 222 (473)
Q Consensus 151 ~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~s~~~l--e~~~~~ 222 (473)
. +.+. . ............. ..............+..|+.. .....+ -.+.+.
T Consensus 142 --------~-~~~~----~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~ 201 (401)
T cd03784 142 --------F-PPPL----G---RANLRLYALLEAE----LWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVL 201 (401)
T ss_pred --------C-CCcc----c---hHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccC
Confidence 0 0000 0 0000000000000 000011111111111111100 000000 011111
Q ss_pred HHHHhhCCCcEEEec-cCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCccc-CCHHHHHHHHHHHHh
Q 042753 223 HMKKEMGHDRVWAVG-PVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYV-LTAKQIHELAAALEK 300 (473)
Q Consensus 223 ~~~~~~~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~ 300 (473)
.....|+ ++..++| ++.... . ....++++..|++. ++++||||+||... .....+..++++++.
T Consensus 202 ~~~~~~~-~~~~~~g~~~~~~~-~----------~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~ 267 (401)
T cd03784 202 PPPPDWP-RFDLVTGYGFRDVP-Y----------NGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVAT 267 (401)
T ss_pred CCCCCcc-ccCcEeCCCCCCCC-C----------CCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHH
Confidence 2233455 5667775 443332 1 13345678888876 78999999999976 445677889999999
Q ss_pred CCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCc
Q 042753 301 TDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWP 380 (473)
Q Consensus 301 ~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P 380 (473)
.+.++||+++... . .... .++|+++.+|+||.++|+++++ ||||||+||+.||+++|||+|++|
T Consensus 268 ~~~~~i~~~g~~~----~-~~~~---------~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P 331 (401)
T cd03784 268 LGQRAILSLGWGG----L-GAED---------LPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVP 331 (401)
T ss_pred cCCeEEEEccCcc----c-cccC---------CCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeC
Confidence 9999999998753 0 0011 2478999999999999999997 999999999999999999999999
Q ss_pred ccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 042753 381 MDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDF 457 (473)
Q Consensus 381 ~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~ 457 (473)
+..||+.||++++ ++|+|+.++ ..+++.++|.++|++++++ .+++++++..+.+++ .++...+++.+
T Consensus 332 ~~~dQ~~~a~~~~-~~G~g~~l~---~~~~~~~~l~~al~~~l~~--~~~~~~~~~~~~~~~----~~g~~~~~~~i 398 (401)
T cd03784 332 FFGDQPFWAARVA-ELGAGPALD---PRELTAERLAAALRRLLDP--PSRRRAAALLRRIRE----EDGVPSAADVI 398 (401)
T ss_pred CCCCcHHHHHHHH-HCCCCCCCC---cccCCHHHHHHHHHHHhCH--HHHHHHHHHHHHHHh----ccCHHHHHHHH
Confidence 9999999999999 559999998 6779999999999999996 466677777777742 34455555444
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.1e-42 Score=355.91 Aligned_cols=423 Identities=27% Similarity=0.345 Sum_probs=263.0
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCC-CCCCCChh-----h
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPK-WPAGSPAT-----R 78 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~-~~~~~~~~-----~ 78 (473)
.++++++++|++||++|+..+|+.|+++||+||++++..................+....+++.. .++++... .
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLD 84 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHH
Confidence 36788889999999999999999999999999999998664443221000000000111111111 11222111 0
Q ss_pred ----HHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhC-CCcEEEecchHHHHHHHHhhhccCCCCC
Q 042753 79 ----LLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELG-LPRVVFSPSGAFALSVSFAMWTDLPTND 153 (473)
Q Consensus 79 ----~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~g-iP~v~~~~~~~~~~~~~~~~~~~~p~~~ 153 (473)
...+...+...+.............++|++|+|.+..+...++.... ||...+.+..+.......+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~------ 158 (496)
T KOG1192|consen 85 ISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPL------ 158 (496)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcc------
Confidence 11222233322223233333322114999999998667777776665 8888887777664433211110
Q ss_pred CCCCCCccccCCCCCC-----CCCCCcc-------ccchhhhccCCCCCchHHHHHHhhhc----cCCcEEeecc-hHHh
Q 042753 154 DPDNVDALVSFPRVPN-----CPVYPWY-------QISHLYRTLKEGDPDWDLHRSNMMAN----KTSWGIVFNS-FAEL 216 (473)
Q Consensus 154 ~~~~~~~~~~~p~l~~-----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s-~~~l 216 (473)
.++|.... .+.+..+ .++....................... ....++..++ +..+
T Consensus 159 --------~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 230 (496)
T KOG1192|consen 159 --------SYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFL 230 (496)
T ss_pred --------cccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEE
Confidence 01221111 0001100 01111100000000001111111111 1122334444 5555
Q ss_pred hHHHHHHHHHh-hCCCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCC--CcEEEEEeCCcc---cCCHHH
Q 042753 217 ERVYIDHMKKE-MGHDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRD--ESVVYVCFGSRY---VLTAKQ 290 (473)
Q Consensus 217 e~~~~~~~~~~-~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~V~vs~Gs~~---~~~~~~ 290 (473)
+......++.. .. +++++|||+.... . ....+...+|++.... +++|||||||.. ..+.++
T Consensus 231 n~~~~~~~~~~~~~-~~v~~IG~l~~~~-~-----------~~~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~ 297 (496)
T KOG1192|consen 231 NSNPLLDFEPRPLL-PKVIPIGPLHVKD-S-----------KQKSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQ 297 (496)
T ss_pred ccCcccCCCCCCCC-CCceEECcEEecC-c-----------cccccccHHHHHHHhhccCCeEEEECCcccccccCCHHH
Confidence 54443333222 24 7999999998875 2 1111133445554333 499999999998 799999
Q ss_pred HHHHHHHHHhC-CCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHh-hhccCccceeeccCchhHHH
Q 042753 291 IHELAAALEKT-DVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAI-LRHKAVGAFLTHCGWNSVLE 368 (473)
Q Consensus 291 ~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~l-L~~~~v~~~ItHgG~~s~~e 368 (473)
..+++.+|++. +++|+|+++.+. . ..+++++.++ ...||+..+|+||.++ |+|++++||||||||||++|
T Consensus 298 ~~~l~~~l~~~~~~~FiW~~~~~~----~---~~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E 369 (496)
T KOG1192|consen 298 KKELAKALESLQGVTFLWKYRPDD----S---IYFPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLE 369 (496)
T ss_pred HHHHHHHHHhCCCceEEEEecCCc----c---hhhhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHH
Confidence 99999999999 889999999863 0 1134444332 3457888899999998 59999999999999999999
Q ss_pred HHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCC
Q 042753 369 GVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGG 448 (473)
Q Consensus 369 al~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~g 448 (473)
++++|||||++|+++||+.||++++++ |.|..+. ..+++...+.+++.++++++ +|+++|+++++.+++ ...
T Consensus 370 ~~~~GvP~v~~Plf~DQ~~Na~~i~~~-g~~~v~~---~~~~~~~~~~~~~~~il~~~-~y~~~~~~l~~~~~~---~p~ 441 (496)
T KOG1192|consen 370 SIYSGVPMVCVPLFGDQPLNARLLVRH-GGGGVLD---KRDLVSEELLEAIKEILENE-EYKEAAKRLSEILRD---QPI 441 (496)
T ss_pred HHhcCCceecCCccccchhHHHHHHhC-CCEEEEe---hhhcCcHHHHHHHHHHHcCh-HHHHHHHHHHHHHHc---CCC
Confidence 999999999999999999999999977 6666666 56666666999999999997 999999999999984 444
Q ss_pred ChHHHHHHHHHHHHhhccCCCcc
Q 042753 449 SSDRDLNDFIKRINELKSGKNLT 471 (473)
Q Consensus 449 s~~~~~~~~~~~~~~~~~~~~~~ 471 (473)
+. ..+..++++..+...++++.
T Consensus 442 ~~-~~~~~~~e~~~~~~~~~~l~ 463 (496)
T KOG1192|consen 442 SP-ELAVKWVEFVARHGGAKHLK 463 (496)
T ss_pred CH-HHHHHHHHHHHhcCCCcccC
Confidence 45 66666778888877666654
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-41 Score=333.43 Aligned_cols=384 Identities=19% Similarity=0.228 Sum_probs=247.7
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCC-CCCC--ChhhHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKW-PAGS--PATRLLK 81 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~-~~~~--~~~~~~~ 81 (473)
++||+++..|+.||++|+++|+++|.++||+|+|++++.+.+.+++. ++.|..++.... .... .......
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a-------g~~f~~~~~~~~~~~~~~~~~~~~~~ 73 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA-------GLAFVAYPIRDSELATEDGKFAGVKS 73 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh-------CcceeeccccCChhhhhhhhhhccch
Confidence 68999999999999999999999999999999999999999999988 566766654311 0111 0011111
Q ss_pred HHHHHH--HHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCC
Q 042753 82 FMRVLR--ELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVD 159 (473)
Q Consensus 82 ~~~~~~--~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 159 (473)
+..... .....++.+++.+. .||+++.|...+.+ .+++..++|++................+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~e~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 140 (406)
T COG1819 74 FRRLLQQFKKLIRELLELLREL--EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPV---------- 140 (406)
T ss_pred hHHHhhhhhhhhHHHHHHHHhc--chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCcccc----------
Confidence 221111 13344666778888 99999999886655 8899999999886555433211111000000
Q ss_pred ccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcE--EeecchH-------HhhHHHHHHHH---Hh
Q 042753 160 ALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWG--IVFNSFA-------ELERVYIDHMK---KE 227 (473)
Q Consensus 160 ~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~-------~le~~~~~~~~---~~ 227 (473)
.....+......++............+ .......+..+ ...+.+. .++..+.+... ..
T Consensus 141 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (406)
T COG1819 141 ------GIAGKLPIPLYPLPPRLVRPLIFARSW----LPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDR 210 (406)
T ss_pred ------cccccccccccccChhhccccccchhh----hhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCC
Confidence 000000000000000000000000000 00000001000 0000000 01111111000 11
Q ss_pred hCCCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEE
Q 042753 228 MGHDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVY 307 (473)
Q Consensus 228 ~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 307 (473)
+| ....++||+.... ..+...|.. .++++||||+||.... .++++.+++++.+.+.++|.
T Consensus 211 ~p-~~~~~~~~~~~~~----------------~~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~ 270 (406)
T COG1819 211 LP-FIGPYIGPLLGEA----------------ANELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIV 270 (406)
T ss_pred CC-CCcCccccccccc----------------cccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEE
Confidence 22 2344555554443 123333433 3799999999999876 88999999999999999999
Q ss_pred EEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchh
Q 042753 308 CVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYT 387 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~ 387 (473)
.+.. . ......+| .|+++.+|+||.++|+++++ ||||||+||+.|||++|||+|++|...||+.
T Consensus 271 ~~~~-~----~~~~~~~p---------~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~ 334 (406)
T COG1819 271 SLGG-A----RDTLVNVP---------DNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPL 334 (406)
T ss_pred eccc-c----ccccccCC---------CceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhH
Confidence 9977 2 11123344 78999999999999999997 9999999999999999999999999999999
Q ss_pred hHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 388 NAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 388 na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
||.|++ ++|+|+.+. .+.++.+.|+++|+++|+|+ .|+++++++++.++. . ++...+.+.+.+...+
T Consensus 335 nA~rve-~~G~G~~l~---~~~l~~~~l~~av~~vL~~~-~~~~~~~~~~~~~~~---~-~g~~~~a~~le~~~~~ 401 (406)
T COG1819 335 NAERVE-ELGAGIALP---FEELTEERLRAAVNEVLADD-SYRRAAERLAEEFKE---E-DGPAKAADLLEEFARE 401 (406)
T ss_pred HHHHHH-HcCCceecC---cccCCHHHHHHHHHHHhcCH-HHHHHHHHHHHHhhh---c-ccHHHHHHHHHHHHhc
Confidence 999999 559999999 89999999999999999997 999999999999973 2 3344444444443433
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.96 E-value=7.6e-27 Score=226.10 Aligned_cols=323 Identities=15% Similarity=0.130 Sum_probs=206.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
|+||++...++-||+.|.+++|++|.++||+|+|+++..-.+. .... ..++.|..++.. ++.....+..+..
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~--~l~~---~~g~~~~~~~~~---~l~~~~~~~~~~~ 72 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK--TIIE---KENIPYYSISSG---KLRRYFDLKNIKD 72 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc--ccCc---ccCCcEEEEecc---CcCCCchHHHHHH
Confidence 7889999999999999999999999999999999998754321 1111 125777766532 2221111222211
Q ss_pred HHHHHh--hHHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCCc
Q 042753 85 VLRELH--YPALLDWFKSHPSPPVAILSDFFLG--WTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVDA 160 (473)
Q Consensus 85 ~~~~~~--~~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 160 (473)
... .. .-...+++++. +||+||...... .+..+|..+++|++.....
T Consensus 73 ~~~-~~~~~~~~~~i~~~~--kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n-------------------------- 123 (352)
T PRK12446 73 PFL-VMKGVMDAYVRIRKL--KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESD-------------------------- 123 (352)
T ss_pred HHH-HHHHHHHHHHHHHhc--CCCEEEecCchhhHHHHHHHHHcCCCEEEECCC--------------------------
Confidence 111 11 22345678999 999999876544 3578899999999874222
Q ss_pred cccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEeccCC
Q 042753 161 LVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAVGPVL 240 (473)
Q Consensus 161 ~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~vGpl~ 240 (473)
.+|++.+ +++.+.... +.-+|++-. ..++..++.++|+-+
T Consensus 124 --~~~g~~n-----------------------r~~~~~a~~-------v~~~f~~~~--------~~~~~~k~~~tG~Pv 163 (352)
T PRK12446 124 --MTPGLAN-----------------------KIALRFASK-------IFVTFEEAA--------KHLPKEKVIYTGSPV 163 (352)
T ss_pred --CCccHHH-----------------------HHHHHhhCE-------EEEEccchh--------hhCCCCCeEEECCcC
Confidence 1222211 111111111 122332211 111214788999655
Q ss_pred CCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCH-HHHHHHHHHHHhCCCcEEEEEeCCCccCCcc
Q 042753 241 PPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTA-KQIHELAAALEKTDVDFVYCVREPDERHASQ 319 (473)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 319 (473)
... - . ....+...+.+.-..++++|+|..||...... +.+.+++..+.. +.+++|+++.+.
T Consensus 164 r~~-~-----~-----~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~------ 225 (352)
T PRK12446 164 REE-V-----L-----KGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN------ 225 (352)
T ss_pred Ccc-c-----c-----cccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch------
Confidence 554 1 0 11112222233333468899999999975433 334445554432 488999998752
Q ss_pred cCCCCchhhHHhhcCCCeEeecCc-c-HHHhhhccCccceeeccCchhHHHHHhhCCeEecCccc-----ccchhhHHHH
Q 042753 320 DCGVLPDGFEDRVAGRGYVIRGWS-Q-QVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMD-----ADQYTNAQLL 392 (473)
Q Consensus 320 ~~~~lp~~~~~~~~~~nv~v~~~~-p-q~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~-----~DQ~~na~rv 392 (473)
+..... + ..++.+..|+ + ..++|+++++ +|||||.+|+.|++++|+|+|++|+. .||..||+.+
T Consensus 226 ----~~~~~~-~--~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l 296 (352)
T PRK12446 226 ----LDDSLQ-N--KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESF 296 (352)
T ss_pred ----HHHHHh-h--cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHH
Confidence 111111 1 1344556887 4 4568999997 99999999999999999999999985 4899999999
Q ss_pred HHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHH
Q 042753 393 VDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARE 435 (473)
Q Consensus 393 ~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~ 435 (473)
++. |+|..+. ..+++++.|.+++.++++|++.|++++++
T Consensus 297 ~~~-g~~~~l~---~~~~~~~~l~~~l~~ll~~~~~~~~~~~~ 335 (352)
T PRK12446 297 ERQ-GYASVLY---EEDVTVNSLIKHVEELSHNNEKYKTALKK 335 (352)
T ss_pred HHC-CCEEEcc---hhcCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 955 9999998 78999999999999999875355544433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.93 E-value=7.4e-24 Score=204.36 Aligned_cols=302 Identities=22% Similarity=0.255 Sum_probs=193.8
Q ss_pred cEEEEEcCC-CCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCC---C-CCCCChhhHH
Q 042753 6 AHILVYPFP-TSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPK---W-PAGSPATRLL 80 (473)
Q Consensus 6 ~~Il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~---~-~~~~~~~~~~ 80 (473)
|||++...+ |.||+.++++||++| |||+|+|++.....+.+... +....++... . ..+.......
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR--------FPVREIPGLGPIQENGRLDRWKTVR 70 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc--------cCEEEccCceEeccCCccchHHHHH
Confidence 689877744 889999999999999 59999999998665555332 2333333111 0 1111111111
Q ss_pred HHH---HHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCC
Q 042753 81 KFM---RVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDN 157 (473)
Q Consensus 81 ~~~---~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 157 (473)
... .... .....+.+++++. +||+||+|.. +.+..+|+..|||++.+........
T Consensus 71 ~~~~~~~~~~-~~~~~~~~~l~~~--~pDlVIsD~~-~~~~~aa~~~giP~i~i~~~~~~~~------------------ 128 (318)
T PF13528_consen 71 NNIRWLARLA-RRIRREIRWLREF--RPDLVISDFY-PLAALAARRAGIPVIVISNQYWFLH------------------ 128 (318)
T ss_pred HHHHhhHHHH-HHHHHHHHHHHhc--CCCEEEEcCh-HHHHHHHHhcCCCEEEEEehHHccc------------------
Confidence 111 1122 3344567788888 9999999954 5567889999999999877754310
Q ss_pred CCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhh--ccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEE
Q 042753 158 VDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMA--NKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWA 235 (473)
Q Consensus 158 ~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~ 235 (473)
+... ... .......+.+.... .......+.-++. .. .. .. .+..+
T Consensus 129 -------~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-------~~-~~-~~~~~ 175 (318)
T PF13528_consen 129 -------PNFW----LPW------------DQDFGRLIERYIDRYHFPPADRRLALSFY-PP-------LP-PF-FRVPF 175 (318)
T ss_pred -------ccCC----cch------------hhhHHHHHHHhhhhccCCcccceecCCcc-cc-------cc-cc-ccccc
Confidence 0000 000 00011112222211 1222222222222 00 00 01 35667
Q ss_pred eccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCC-CcEEEEEeCCCc
Q 042753 236 VGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTD-VDFVYCVREPDE 314 (473)
Q Consensus 236 vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~ 314 (473)
+||+.... . ...+ . .+++.|+|++|+.... .+++++++.+ .++++. +...
T Consensus 176 ~~p~~~~~-~-----------~~~~-------~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~- 226 (318)
T PF13528_consen 176 VGPIIRPE-I-----------RELP-------P--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA- 226 (318)
T ss_pred cCchhccc-c-----------cccC-------C--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc-
Confidence 88887765 2 0000 1 2567899999998643 6677888776 566655 5431
Q ss_pred cCCcccCCCCchhhHHhhcCCCeEeecCc--cHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcc--cccchhhHH
Q 042753 315 RHASQDCGVLPDGFEDRVAGRGYVIRGWS--QQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPM--DADQYTNAQ 390 (473)
Q Consensus 315 ~~~~~~~~~lp~~~~~~~~~~nv~v~~~~--pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~--~~DQ~~na~ 390 (473)
.+ + ..+|+.+.+|. ...++|+.+++ +|+|||+||+.|++++|+|+|++|. ..+|..||+
T Consensus 227 ------~~--~-------~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~ 289 (318)
T PF13528_consen 227 ------AD--P-------RPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNAR 289 (318)
T ss_pred ------cc--c-------cCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHH
Confidence 01 1 24788888876 45679999997 9999999999999999999999999 789999999
Q ss_pred HHHHHhcceEEeccCCCCCCCHHHHHHHHHHH
Q 042753 391 LLVDQLGVGIRVGEGTRNIPESDELARLLAQS 422 (473)
Q Consensus 391 rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~ 422 (473)
+++ ++|+|+.++ ..+++++.|.++|+++
T Consensus 290 ~l~-~~G~~~~~~---~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 290 KLE-ELGLGIVLS---QEDLTPERLAEFLERL 317 (318)
T ss_pred HHH-HCCCeEEcc---cccCCHHHHHHHHhcC
Confidence 999 559999998 8999999999999864
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=2.1e-22 Score=192.64 Aligned_cols=312 Identities=19% Similarity=0.213 Sum_probs=200.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCC-eEEEEeCCCChhh-hhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGL-NVTVLITQNNLPL-LDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFM 83 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~~~~~~-i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~ 83 (473)
++|++...++-||+.|.++|+++|.++|+ +|.++.+....+. +... .++.+..++... +.....+..+.
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~------~~~~~~~I~~~~---~~~~~~~~~~~ 71 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQ------YGIEFELIPSGG---LRRKGSLKLLK 71 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccc------cCceEEEEeccc---ccccCcHHHHH
Confidence 46788888899999999999999999999 6888866644332 2221 256666666322 12112222222
Q ss_pred HHHHH-HhhHHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCCc
Q 042753 84 RVLRE-LHYPALLDWFKSHPSPPVAILSDFFLG--WTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVDA 160 (473)
Q Consensus 84 ~~~~~-~~~~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 160 (473)
..+.. ....+..++|++. +||+||.-.-+. .+..+|..+|||.+.--
T Consensus 72 ~~~~~~~~~~~a~~il~~~--kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihE---------------------------- 121 (357)
T COG0707 72 APFKLLKGVLQARKILKKL--KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHE---------------------------- 121 (357)
T ss_pred HHHHHHHHHHHHHHHHHHc--CCCEEEecCCccccHHHHHHHhCCCCEEEEe----------------------------
Confidence 22221 2245668899999 999999854444 56688889999988731
Q ss_pred cccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEec-cC
Q 042753 161 LVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAVG-PV 239 (473)
Q Consensus 161 ~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~vG-pl 239 (473)
....||+.+ +++.+... ....+|++.+ ...+..++..+| |+
T Consensus 122 qn~~~G~an-----------------------k~~~~~a~-------~V~~~f~~~~--------~~~~~~~~~~tG~Pv 163 (357)
T COG0707 122 QNAVPGLAN-----------------------KILSKFAK-------KVASAFPKLE--------AGVKPENVVVTGIPV 163 (357)
T ss_pred cCCCcchhH-----------------------HHhHHhhc-------eeeecccccc--------ccCCCCceEEecCcc
Confidence 122333321 11111111 1222232211 001113588888 55
Q ss_pred CCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCC-HHHHHHHHHHHHhCCCcEEEEEeCCCccCCc
Q 042753 240 LPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLT-AKQIHELAAALEKTDVDFVYCVREPDERHAS 318 (473)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 318 (473)
...- . . .+..-..+... .++++|+|.-||+.... .+.+...+..+.+ +..+++.++.+.
T Consensus 164 r~~~-~-----------~-~~~~~~~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~----- 223 (357)
T COG0707 164 RPEF-E-----------E-LPAAEVRKDGR-LDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND----- 223 (357)
T ss_pred cHHh-h-----------c-cchhhhhhhcc-CCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch-----
Confidence 5544 1 1 12222222222 37899999999996532 2333334444444 578888888752
Q ss_pred ccCCCCchhhHHhhcCCC-eEeecCccHH-HhhhccCccceeeccCchhHHHHHhhCCeEecCccc----ccchhhHHHH
Q 042753 319 QDCGVLPDGFEDRVAGRG-YVIRGWSQQV-AILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMD----ADQYTNAQLL 392 (473)
Q Consensus 319 ~~~~~lp~~~~~~~~~~n-v~v~~~~pq~-~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~----~DQ~~na~rv 392 (473)
-+.........| +.+..|..+. ++|+.+++ +||++|.+|+.|+++.|+|+|.+|.. .||..||+.+
T Consensus 224 ------~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l 295 (357)
T COG0707 224 ------LEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFL 295 (357)
T ss_pred ------HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHH
Confidence 123333333344 7788888764 48888887 99999999999999999999999974 4899999999
Q ss_pred HHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc
Q 042753 393 VDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 393 ~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~ 426 (473)
+++ |+|..++ ..++|.+++.+.|.++++++
T Consensus 296 ~~~-gaa~~i~---~~~lt~~~l~~~i~~l~~~~ 325 (357)
T COG0707 296 EKA-GAALVIR---QSELTPEKLAELILRLLSNP 325 (357)
T ss_pred HhC-CCEEEec---cccCCHHHHHHHHHHHhcCH
Confidence 966 9999999 88999999999999999985
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.90 E-value=7.6e-22 Score=189.95 Aligned_cols=307 Identities=16% Similarity=0.133 Sum_probs=173.7
Q ss_pred EEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCee-EEEcCCCCCCCCCCh-hhHHHHH
Q 042753 7 HILVYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQ-SLVLPQPKWPAGSPA-TRLLKFM 83 (473)
Q Consensus 7 ~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~-f~~l~~~~~~~~~~~-~~~~~~~ 83 (473)
||++.. ..|.||+.|.++|+++|.+ ||+|+|+++......+... ++. +..+|.......... .....+.
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~-------~~~~~~~~p~~~~~~~~~~~~~~~~l~ 72 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY-------GFKVFETFPGIKLKGEDGKVNIVKTLR 72 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh-------cCcceeccCCceEeecCCcCcHHHHHH
Confidence 577766 4466999999999999999 9999999988744444443 222 222221000000000 1111111
Q ss_pred H--HHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCCcc
Q 042753 84 R--VLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVDAL 161 (473)
Q Consensus 84 ~--~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 161 (473)
. .+.........+++++. +||+||+| ..+.+..+|+.+|||++.+..+....
T Consensus 73 ~~~~~~~~~~~~~~~~l~~~--~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~----------------------- 126 (321)
T TIGR00661 73 NKEYSPKKAIRREINIIREY--NPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTR----------------------- 126 (321)
T ss_pred hhccccHHHHHHHHHHHHhc--CCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhc-----------------------
Confidence 0 11011233456788999 99999999 55667889999999999876532110
Q ss_pred ccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccC-CcEEeecchHHhhHHHHHHHHHhhCCCcEEEeccCC
Q 042753 162 VSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKT-SWGIVFNSFAELERVYIDHMKKEMGHDRVWAVGPVL 240 (473)
Q Consensus 162 ~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~vGpl~ 240 (473)
.|+. . +. ......+....+.. ........+.... ... |. +.
T Consensus 127 --~~~~-----~--~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~--p~------~~ 168 (321)
T TIGR00661 127 --YPLK-----T--DL-------------IVYPTMAALRIFNERCERFIVPDYPFPY--------TIC--PK------II 168 (321)
T ss_pred --CCcc-----c--ch-------------hHHHHHHHHHHhccccceEeeecCCCCC--------CCC--cc------cc
Confidence 0100 0 00 00000001111111 1111111111000 000 10 00
Q ss_pred CCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCC-cEEEEEeCCCccCCcc
Q 042753 241 PPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDV-DFVYCVREPDERHASQ 319 (473)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~ 319 (473)
... + + ........+|.. .+++.|+|.+|+... ..+++++++.+. .++ +.... .
T Consensus 169 ~~~-~-------~---~~~~~~~~~~~~--~~~~~iLv~~g~~~~------~~l~~~l~~~~~~~~i--~~~~~-----~ 222 (321)
T TIGR00661 169 KNM-E-------G---PLIRYDVDDVDN--YGEDYILVYIGFEYR------YKILELLGKIANVKFV--CYSYE-----V 222 (321)
T ss_pred ccC-C-------C---cccchhhhcccc--CCCCcEEEECCcCCH------HHHHHHHHhCCCeEEE--EeCCC-----C
Confidence 000 0 0 001111222322 256778888888542 345677776653 443 22321 0
Q ss_pred cCCCCchhhHHhhcCCCeEeecCcc--HHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccc--cchhhHHHHHHH
Q 042753 320 DCGVLPDGFEDRVAGRGYVIRGWSQ--QVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDA--DQYTNAQLLVDQ 395 (473)
Q Consensus 320 ~~~~lp~~~~~~~~~~nv~v~~~~p--q~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~--DQ~~na~rv~~~ 395 (473)
..+.+ .+|+.+.+|.| ..+.|+.+++ +|||||++|+.||+++|+|++++|... ||..||+.+++.
T Consensus 223 ~~~~~---------~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~ 291 (321)
T TIGR00661 223 AKNSY---------NENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL 291 (321)
T ss_pred Ccccc---------CCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC
Confidence 00112 26888889997 4567888886 999999999999999999999999955 899999999955
Q ss_pred hcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHH
Q 042753 396 LGVGIRVGEGTRNIPESDELARLLAQSVDGPRRER 430 (473)
Q Consensus 396 ~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 430 (473)
|+|+.++ ..++ ++.+++.++++|+ .|+
T Consensus 292 -g~~~~l~---~~~~---~~~~~~~~~~~~~-~~~ 318 (321)
T TIGR00661 292 -GCGIALE---YKEL---RLLEAILDIRNMK-RYK 318 (321)
T ss_pred -CCEEEcC---hhhH---HHHHHHHhccccc-ccc
Confidence 9999998 5555 6677777888886 664
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.86 E-value=5.6e-19 Score=173.22 Aligned_cols=343 Identities=19% Similarity=0.170 Sum_probs=205.1
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCh--hhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNL--PLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKF 82 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~--~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 82 (473)
|+||++...+..||...++.|+++|.++||+|++++.+... ..++. .++++..++.+...+......+...
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~l~~~ 73 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPK-------AGIEFHFIPSGGLRRKGSLANLKAP 73 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcccc-------CCCcEEEEeccCcCCCChHHHHHHH
Confidence 78999999888899999999999999999999999986521 11111 2566666654221111111111111
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCc--chHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCCc
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILSDFFL--GWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVDA 160 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 160 (473)
. ... .....+.+++++. +||+|++.... ..+..+++..++|+|..... .
T Consensus 74 ~-~~~-~~~~~~~~~ik~~--~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~-~------------------------ 124 (357)
T PRK00726 74 F-KLL-KGVLQARKILKRF--KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN-A------------------------ 124 (357)
T ss_pred H-HHH-HHHHHHHHHHHhc--CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC-C------------------------
Confidence 1 111 2334567888888 99999999642 24456677889998863110 0
Q ss_pred cccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEeccCC
Q 042753 161 LVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAVGPVL 240 (473)
Q Consensus 161 ~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~vGpl~ 240 (473)
.++ . ..+++.+ ..+.++. +.++. ..+ .-+ .++.++|+-+
T Consensus 125 ---~~~--------------~---------~~r~~~~------~~d~ii~-~~~~~---~~~----~~~-~~i~vi~n~v 163 (357)
T PRK00726 125 ---VPG--------------L---------ANKLLAR------FAKKVAT-AFPGA---FPE----FFK-PKAVVTGNPV 163 (357)
T ss_pred ---Ccc--------------H---------HHHHHHH------HhchheE-Cchhh---hhc----cCC-CCEEEECCCC
Confidence 000 0 0011110 1111111 11111 000 112 5788888655
Q ss_pred CCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCC--cEEEEEeCCCccCCc
Q 042753 241 PPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDV--DFVYCVREPDERHAS 318 (473)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~--~~i~~~~~~~~~~~~ 318 (473)
... . ..... ....++...++++|++..|+... ......+.+++++... .++|.++...
T Consensus 164 ~~~-~-----------~~~~~-~~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g~----- 223 (357)
T PRK00726 164 REE-I-----------LALAA-PPARLAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKGD----- 223 (357)
T ss_pred ChH-h-----------hcccc-hhhhccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCCc-----
Confidence 443 1 00001 11112222345667665555421 1122223355554332 4556666642
Q ss_pred ccCCCCchhhHHhhc-CCCeEeecCc-cHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcc----cccchhhHHHH
Q 042753 319 QDCGVLPDGFEDRVA-GRGYVIRGWS-QQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPM----DADQYTNAQLL 392 (473)
Q Consensus 319 ~~~~~lp~~~~~~~~-~~nv~v~~~~-pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~rv 392 (473)
. +.+.+... .-++.+.+|+ +..++++.+++ +|+|+|.++++||+++|+|+|++|. ..+|..++..+
T Consensus 224 -----~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i 295 (357)
T PRK00726 224 -----L-EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARAL 295 (357)
T ss_pred -----H-HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHH
Confidence 1 22322222 2237778998 45689999998 9999999999999999999999997 46899999999
Q ss_pred HHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042753 393 VDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRI 461 (473)
Q Consensus 393 ~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 461 (473)
.+. |.|..+. .++++.+.|.++|.++++|+ +++++..+-+... ...++.++.++.+++.+
T Consensus 296 ~~~-~~g~~~~---~~~~~~~~l~~~i~~ll~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 355 (357)
T PRK00726 296 VDA-GAALLIP---QSDLTPEKLAEKLLELLSDP-ERLEAMAEAARAL----GKPDAAERLADLIEELA 355 (357)
T ss_pred HHC-CCEEEEE---cccCCHHHHHHHHHHHHcCH-HHHHHHHHHHHhc----CCcCHHHHHHHHHHHHh
Confidence 965 9999998 77788999999999999997 7776555544443 34455666666665544
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.81 E-value=7e-17 Score=157.96 Aligned_cols=323 Identities=19% Similarity=0.179 Sum_probs=192.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHH
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVL 86 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~ 86 (473)
||++...+..||......|++.|.++||+|++++....... . ... ..++++..++.....+......+..++..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 74 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-R-LVP---KAGIPLHTIPVGGLRRKGSLKKLKAPFKL- 74 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-h-ccc---ccCCceEEEEecCcCCCChHHHHHHHHHH-
Confidence 58888888889999999999999999999999987643111 1 100 12466666664321111111111111111
Q ss_pred HHHhhHHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCCccccC
Q 042753 87 RELHYPALLDWFKSHPSPPVAILSDFFLG--WTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVDALVSF 164 (473)
Q Consensus 87 ~~~~~~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 164 (473)
. .....+.+++++. +||+|++..... .+..+|...++|++..... . .
T Consensus 75 ~-~~~~~~~~~i~~~--~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~-~---------------------------~ 123 (350)
T cd03785 75 L-KGVLQARKILKKF--KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN-A---------------------------V 123 (350)
T ss_pred H-HHHHHHHHHHHhc--CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC-C---------------------------C
Confidence 1 2234567888888 999999875432 4567788889998753110 0 0
Q ss_pred CCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEeccCCCCCC
Q 042753 165 PRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAVGPVLPPDD 244 (473)
Q Consensus 165 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~vGpl~~~~~ 244 (473)
++ . ..+++ ....+.++..+-...+. ..+ .++.++|.-....
T Consensus 124 ~~--------------~---------~~~~~------~~~~~~vi~~s~~~~~~--------~~~-~~~~~i~n~v~~~- 164 (350)
T cd03785 124 PG--------------L---------ANRLL------ARFADRVALSFPETAKY--------FPK-DKAVVTGNPVREE- 164 (350)
T ss_pred cc--------------H---------HHHHH------HHhhCEEEEcchhhhhc--------CCC-CcEEEECCCCchH-
Confidence 00 0 00000 11123333333211111 112 5778888654433
Q ss_pred cchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCC-HHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCC
Q 042753 245 DLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLT-AKQIHELAAALEKTDVDFVYCVREPDERHASQDCGV 323 (473)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~ 323 (473)
. ....+. ...+....++++|++..|+..... .+.+..++..+.+.+..+++.++...
T Consensus 165 ~-----------~~~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~---------- 222 (350)
T cd03785 165 I-----------LALDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD---------- 222 (350)
T ss_pred H-----------hhhhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc----------
Confidence 1 000111 223333235566666666653211 12233344444433455666666531
Q ss_pred CchhhHHhhc--CCCeEeecCc-cHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcc----cccchhhHHHHHHHh
Q 042753 324 LPDGFEDRVA--GRGYVIRGWS-QQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPM----DADQYTNAQLLVDQL 396 (473)
Q Consensus 324 lp~~~~~~~~--~~nv~v~~~~-pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~rv~~~~ 396 (473)
.+.+.+... ..|+++.+|+ ...++|+.+++ +|+++|.+++.||+++|+|+|++|. ..+|..++..+.+.
T Consensus 223 -~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~- 298 (350)
T cd03785 223 -LEEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA- 298 (350)
T ss_pred -HHHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-
Confidence 122222222 3688888998 55679999997 9999999999999999999999986 46788999999955
Q ss_pred cceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHH
Q 042753 397 GVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARE 435 (473)
Q Consensus 397 G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~ 435 (473)
|.|..++ ..+.+.++|.++|+++++|+ ..++...+
T Consensus 299 g~g~~v~---~~~~~~~~l~~~i~~ll~~~-~~~~~~~~ 333 (350)
T cd03785 299 GAAVLIP---QEELTPERLAAALLELLSDP-ERLKAMAE 333 (350)
T ss_pred CCEEEEe---cCCCCHHHHHHHHHHHhcCH-HHHHHHHH
Confidence 9999998 66678999999999999886 55544433
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.75 E-value=1.4e-15 Score=148.58 Aligned_cols=317 Identities=18% Similarity=0.179 Sum_probs=176.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh-hhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP-LLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
|||+|++.+..||+.....|+++|.++||+|++++.+.... .+.. ..++++..++............+.....
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~------~~g~~~~~i~~~~~~~~~~~~~l~~~~~ 74 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVP------KAGIEFYFIPVGGLRRKGSFRLIKTPLK 74 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccc------cCCCceEEEeccCcCCCChHHHHHHHHH
Confidence 38999999999999988899999999999999998753211 1101 0256666665422111111122211111
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCCccc
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSDFFLG--WTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVDALV 162 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 162 (473)
. . .....+.+++++. +||+|++..... .+..+++..++|.+... ....
T Consensus 75 ~-~-~~~~~l~~~i~~~--~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~-~~~~------------------------- 124 (348)
T TIGR01133 75 L-L-KAVFQARRILKKF--KPDAVIGFGGYVSGPAGLAAKLLGIPLFHHE-QNAV------------------------- 124 (348)
T ss_pred H-H-HHHHHHHHHHHhc--CCCEEEEcCCcccHHHHHHHHHcCCCEEEEC-CCCC-------------------------
Confidence 1 1 2334667889999 999999975433 34456788899987421 0000
Q ss_pred cCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEeccCCCC
Q 042753 163 SFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAVGPVLPP 242 (473)
Q Consensus 163 ~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~vGpl~~~ 242 (473)
+ . . ..+++. +..+.++..+ ++.. ... ...++|.-+..
T Consensus 125 --~---~-----------~---------~~~~~~------~~~d~ii~~~-~~~~--------~~~---~~~~i~n~v~~ 161 (348)
T TIGR01133 125 --P---G-----------L---------TNKLLS------RFAKKVLISF-PGAK--------DHF---EAVLVGNPVRQ 161 (348)
T ss_pred --c---c-----------H---------HHHHHH------HHhCeeEECc-hhHh--------hcC---CceEEcCCcCH
Confidence 0 0 0 001110 1122222222 1111 000 22455532221
Q ss_pred CCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHH---hCCCcEEEEEeCCCccCCcc
Q 042753 243 DDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALE---KTDVDFVYCVREPDERHASQ 319 (473)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~---~~~~~~i~~~~~~~~~~~~~ 319 (473)
. . ...+.. .+++.-..++++|.+..|+... ......+.++++ +.+.++++..+...
T Consensus 162 ~-~-----------~~~~~~-~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~~------ 220 (348)
T TIGR01133 162 E-I-----------RSLPVP-RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKND------ 220 (348)
T ss_pred H-H-----------hcccch-hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcch------
Confidence 1 0 000000 1122222244555444444432 222222334443 34456665444431
Q ss_pred cCCCCchhhHHhhcCCCe-EeecCc--cHHHhhhccCccceeeccCchhHHHHHhhCCeEecCccc---ccchhhHHHHH
Q 042753 320 DCGVLPDGFEDRVAGRGY-VIRGWS--QQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMD---ADQYTNAQLLV 393 (473)
Q Consensus 320 ~~~~lp~~~~~~~~~~nv-~v~~~~--pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~---~DQ~~na~rv~ 393 (473)
. +.+.+.....++ .++.|. +..++|+.+++ +|+++|.+++.||+++|+|+|++|.. .+|..|+..+.
T Consensus 221 ----~-~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~ 293 (348)
T TIGR01133 221 ----L-EKVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLE 293 (348)
T ss_pred ----H-HHHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHH
Confidence 1 223322222221 122333 55778999997 99999988999999999999998863 46788888898
Q ss_pred HHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHH
Q 042753 394 DQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKAR 434 (473)
Q Consensus 394 ~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~ 434 (473)
+. |.|..+. ..+.+.++|.++|+++++|+ +.+++..
T Consensus 294 ~~-~~G~~~~---~~~~~~~~l~~~i~~ll~~~-~~~~~~~ 329 (348)
T TIGR01133 294 DL-GAGLVIR---QKELLPEKLLEALLKLLLDP-ANLEAMA 329 (348)
T ss_pred HC-CCEEEEe---cccCCHHHHHHHHHHHHcCH-HHHHHHH
Confidence 54 9999988 67778999999999999986 6554433
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.74 E-value=8.7e-16 Score=151.09 Aligned_cols=353 Identities=12% Similarity=0.030 Sum_probs=198.8
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
-.||++...++.||+.|. +|+++|.++|++|+|++.... .+++.+.. ..+.+..++. .++. +.+..+..
T Consensus 5 ~~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~---~~~~~~~l~v---~G~~--~~l~~~~~ 73 (385)
T TIGR00215 5 IPTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCE---VLYSMEELSV---MGLR--EVLGRLGR 73 (385)
T ss_pred CCeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCc---cccChHHhhh---ccHH--HHHHHHHH
Confidence 368999999999999999 999999999999999997632 34443210 1233333321 1111 12222222
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEe-CCCcch--HHHHHHHhCCCcEEEec-chHHHHHHHHhhhccCCCCCCCCCCCc
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILS-DFFLGW--TQGLAAELGLPRVVFSP-SGAFALSVSFAMWTDLPTNDDPDNVDA 160 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~-D~~~~~--~~~~A~~~giP~v~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~ 160 (473)
. . .......+++++. +||+||. |..... ....|+.+|||++.+.+ ..+.
T Consensus 74 ~-~-~~~~~~~~~l~~~--kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~wa----------------------- 126 (385)
T TIGR00215 74 L-L-KIRKEVVQLAKQA--KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWA----------------------- 126 (385)
T ss_pred H-H-HHHHHHHHHHHhc--CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhh-----------------------
Confidence 2 2 2334778889999 9999996 532222 23478899999987531 1000
Q ss_pred cccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEec-cC
Q 042753 161 LVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAVG-PV 239 (473)
Q Consensus 161 ~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~vG-pl 239 (473)
|. .. ..+.+.+..+. ++-++ +.+... +.. .+ -+..++| |+
T Consensus 127 --------------w~-----------~~-~~r~l~~~~d~-------v~~~~-~~e~~~---~~~-~g-~~~~~vGnPv 167 (385)
T TIGR00215 127 --------------WR-----------KW-RAKKIEKATDF-------LLAIL-PFEKAF---YQK-KN-VPCRFVGHPL 167 (385)
T ss_pred --------------cC-----------cc-hHHHHHHHHhH-------hhccC-CCcHHH---HHh-cC-CCEEEECCch
Confidence 00 00 01111111111 11111 112211 111 22 3567899 44
Q ss_pred CCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHh---C--CCcEEEEEeCCCc
Q 042753 240 LPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEK---T--DVDFVYCVREPDE 314 (473)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~---~--~~~~i~~~~~~~~ 314 (473)
.... . ..........+.+.-..++++|.+.-||....-......++++++. . +.++++......
T Consensus 168 ~~~~-~---------~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~- 236 (385)
T TIGR00215 168 LDAI-P---------LYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK- 236 (385)
T ss_pred hhhc-c---------ccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch-
Confidence 3332 1 0001222233333333467888888888754223344445544443 2 345555443321
Q ss_pred cCCcccCCCCchhhHHhhc-CCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecC----cccc------
Q 042753 315 RHASQDCGVLPDGFEDRVA-GRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTW----PMDA------ 383 (473)
Q Consensus 315 ~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~----P~~~------ 383 (473)
. .+.+ +.+.+... ...+....+ ...++++.+++ +|+-+|..|+ |++++|+|+|++ |+..
T Consensus 237 ---~--~~~~-~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~ 306 (385)
T TIGR00215 237 ---R--RLQF-EQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRL 306 (385)
T ss_pred ---h--HHHH-HHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHH
Confidence 0 0001 11111111 112333222 34568999997 9999999887 999999999999 7742
Q ss_pred ---cchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 042753 384 ---DQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP---RRERLKARELSGAALSAVVKGGSSDRDLNDF 457 (473)
Q Consensus 384 ---DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~---~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~ 457 (473)
+|..|+..++.+ ++...+. +.+.|++.|.+.+.++++|+ .+++++..+--..+++...++|.++++.+.+
T Consensus 307 ~~~~~~~~~nil~~~-~~~pel~---q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i 382 (385)
T TIGR00215 307 VKTDYISLPNILANR-LLVPELL---QEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAV 382 (385)
T ss_pred HcCCeeeccHHhcCC-ccchhhc---CCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 388899999967 9999988 88999999999999999873 0333333333333333335556677777766
Q ss_pred HH
Q 042753 458 IK 459 (473)
Q Consensus 458 ~~ 459 (473)
++
T Consensus 383 ~~ 384 (385)
T TIGR00215 383 LE 384 (385)
T ss_pred hh
Confidence 65
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.72 E-value=2.4e-15 Score=148.71 Aligned_cols=167 Identities=17% Similarity=0.290 Sum_probs=113.3
Q ss_pred CCCcEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEEeCCCccCCcccCCCCchhhHHhhc--CCCeEeecCccHH-
Q 042753 271 RDESVVYVCFGSRYVLTAKQIHELAAALEKT-DVDFVYCVREPDERHASQDCGVLPDGFEDRVA--GRGYVIRGWSQQV- 346 (473)
Q Consensus 271 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~nv~v~~~~pq~- 346 (473)
.++++|++..|+.... ..+..+++++.+. +.+++++.+.+. .+-+.+++... ..|+.+.+|+++.
T Consensus 200 ~~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~---------~~~~~l~~~~~~~~~~v~~~g~~~~~~ 268 (380)
T PRK13609 200 PNKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNE---------ALKQSLEDLQETNPDALKVFGYVENID 268 (380)
T ss_pred CCCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCH---------HHHHHHHHHHhcCCCcEEEEechhhHH
Confidence 3567788877877532 2345577777654 567777766431 11122222211 2578888999874
Q ss_pred HhhhccCccceeeccCchhHHHHHhhCCeEecC-cccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCC
Q 042753 347 AILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTW-PMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDG 425 (473)
Q Consensus 347 ~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~ 425 (473)
+++..+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+.+. |+|+... +.++|.++|.++++|
T Consensus 269 ~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~~-------~~~~l~~~i~~ll~~ 338 (380)
T PRK13609 269 ELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVIR-------DDEEVFAKTEALLQD 338 (380)
T ss_pred HHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEEC-------CHHHHHHHHHHHHCC
Confidence 79999997 99999988999999999999985 6777788899888855 8887654 578999999999998
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 426 PRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 426 ~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
+ +.+++.. +..++. ....+.++.++.+++.+..
T Consensus 339 ~-~~~~~m~---~~~~~~-~~~~s~~~i~~~i~~~~~~ 371 (380)
T PRK13609 339 D-MKLLQMK---EAMKSL-YLPEPADHIVDDILAENHV 371 (380)
T ss_pred H-HHHHHHH---HHHHHh-CCCchHHHHHHHHHHhhhh
Confidence 6 5544333 333322 3334566666666665543
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.68 E-value=5.8e-15 Score=138.56 Aligned_cols=254 Identities=16% Similarity=0.121 Sum_probs=152.8
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEeCCCChh---hhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhh
Q 042753 15 TSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP---LLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHY 91 (473)
Q Consensus 15 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~---~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (473)
|.||+..+++||++|.++||+|+|++...... .+++. ++....++.... .. .-.
T Consensus 13 G~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~-------g~~v~~~~~~~~---------------~~-~d~ 69 (279)
T TIGR03590 13 GLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSA-------GFPVYELPDESS---------------RY-DDA 69 (279)
T ss_pred cccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHc-------CCeEEEecCCCc---------------hh-hhH
Confidence 67999999999999999999999999986543 33333 677776663211 01 112
Q ss_pred HHHHHHHhcCCCCCcEEEeCCCcchH--HHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCCccccCCCCCC
Q 042753 92 PALLDWFKSHPSPPVAILSDFFLGWT--QGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVDALVSFPRVPN 169 (473)
Q Consensus 92 ~~l~~~l~~~~~~pD~VV~D~~~~~~--~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~l~~ 169 (473)
..+.+++++. +||+||+|.+.... ....+..+.+.+.+--.....
T Consensus 70 ~~~~~~l~~~--~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~~~------------------------------- 116 (279)
T TIGR03590 70 LELINLLEEE--KFDILIVDHYGLDADWEKLIKEFGRKILVIDDLADRP------------------------------- 116 (279)
T ss_pred HHHHHHHHhc--CCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCCCC-------------------------------
Confidence 3467788888 99999999875422 233334566666542211000
Q ss_pred CCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEecc---CCCCCCcc
Q 042753 170 CPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAVGP---VLPPDDDL 246 (473)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~vGp---l~~~~~~~ 246 (473)
. .++ ++++.-...+ ...+. ...+.......|| ++.+. -
T Consensus 117 ---~------------------------------~~D-~vin~~~~~~--~~~y~-~~~~~~~~~l~G~~Y~~lr~e-F- 157 (279)
T TIGR03590 117 ---H------------------------------DCD-LLLDQNLGAD--ASDYQ-GLVPANCRLLLGPSYALLREE-F- 157 (279)
T ss_pred ---c------------------------------CCC-EEEeCCCCcC--HhHhc-ccCcCCCeEEecchHHhhhHH-H-
Confidence 0 000 1111100000 00000 0001023456665 33222 0
Q ss_pred hhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhC--CCcEEEEEeCCCccCCcccCCCC
Q 042753 247 VESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKT--DVDFVYCVREPDERHASQDCGVL 324 (473)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~l 324 (473)
.... ..-..+...+.|+|++|...... ....++++|.+. +.++.++++... ..
T Consensus 158 ----------~~~~----~~~~~~~~~~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~---------~~ 212 (279)
T TIGR03590 158 ----------YQLA----TANKRRKPLRRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSN---------PN 212 (279)
T ss_pred ----------HHhh----HhhhcccccCeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCC---------cC
Confidence 0000 00001012467999999775422 455677777653 467888887752 22
Q ss_pred chhhHHhhc-CCCeEeecCccHH-HhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHH
Q 042753 325 PDGFEDRVA-GRGYVIRGWSQQV-AILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQL 391 (473)
Q Consensus 325 p~~~~~~~~-~~nv~v~~~~pq~-~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~r 391 (473)
.+.+++... .+|+.+..++++. ++|+.+++ +|++|| +|+.|+++.|+|+|++|...+|..||+.
T Consensus 213 ~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 213 LDELKKFAKEYPNIILFIDVENMAELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 233433322 3588889999986 79999997 999999 9999999999999999999999999875
No 38
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.66 E-value=5.5e-14 Score=128.44 Aligned_cols=336 Identities=16% Similarity=0.113 Sum_probs=197.9
Q ss_pred ccEEEEEcC--CCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCC--CCCCCChhh
Q 042753 5 GAHILVYPF--PTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPK--WPAGSPATR 78 (473)
Q Consensus 5 ~~~Il~~~~--~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~--~~~~~~~~~ 78 (473)
++||+|++. .+.||+..+..+|+.|++. |.+|++++......-+... .+++|+.+|.-. .++......
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~------~gVd~V~LPsl~k~~~G~~~~~d 82 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGP------AGVDFVKLPSLIKGDNGEYGLVD 82 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCc------ccCceEecCceEecCCCceeeee
Confidence 679999994 5679999999999999997 9999999987544333321 479999888432 112111111
Q ss_pred HHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCC
Q 042753 79 LLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNV 158 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 158 (473)
...-...+.+.-.+-+...++.. +||++|+|.+-. |+. -+.. |. ..+...- .
T Consensus 83 ~~~~l~e~~~~Rs~lil~t~~~f--kPDi~IVd~~P~-Glr-~EL~--pt-----------L~yl~~~---------~-- 134 (400)
T COG4671 83 LDGDLEETKKLRSQLILSTAETF--KPDIFIVDKFPF-GLR-FELL--PT-----------LEYLKTT---------G-- 134 (400)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhc--CCCEEEEecccc-chh-hhhh--HH-----------HHHHhhc---------C--
Confidence 10112233324456677778889 999999997743 310 1100 00 0000000 0
Q ss_pred CccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccC-CcEEeecc---hHHhhHHHHHHHHHhhCCCcEE
Q 042753 159 DALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKT-SWGIVFNS---FAELERVYIDHMKKEMGHDRVW 234 (473)
Q Consensus 159 ~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s---~~~le~~~~~~~~~~~~~~~~~ 234 (473)
++..+..+.+........ ..+.... ..+.+.+ .+.+++.. |.+++.. +++....- ..+.
T Consensus 135 ----------t~~vL~lr~i~D~p~~~~-~~w~~~~---~~~~I~r~yD~V~v~GdP~f~d~~~~-~~~~~~i~--~k~~ 197 (400)
T COG4671 135 ----------TRLVLGLRSIRDIPQELE-ADWRRAE---TVRLINRFYDLVLVYGDPDFYDPLTE-FPFAPAIR--AKMR 197 (400)
T ss_pred ----------CcceeehHhhhhchhhhc-cchhhhH---HHHHHHHhheEEEEecCccccChhhc-CCccHhhh--hhee
Confidence 000011111111111110 0001111 1112222 12333322 3333221 11111111 4789
Q ss_pred EeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHh-CCCc--EEEEEeC
Q 042753 235 AVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEK-TDVD--FVYCVRE 311 (473)
Q Consensus 235 ~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~-~~~~--~i~~~~~ 311 (473)
|+|.+ .+..+ .. ..+ |... +++.-|+||-|.-. ...+.+..+++|-.. .+.+ .+.+++.
T Consensus 198 ytG~v-q~~~~------~~-----~~p----~~~~-pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtGP 259 (400)
T COG4671 198 YTGFV-QRSLP------HL-----PLP----PHEA-PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTGP 259 (400)
T ss_pred EeEEe-eccCc------CC-----CCC----CcCC-CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeCC
Confidence 99988 33211 00 000 1111 35667999988864 456777777777654 3444 4444554
Q ss_pred CCccCCcccCCCCchhhHHhh-----cCCCeEeecCccHH-HhhhccCccceeeccCchhHHHHHhhCCeEecCccc---
Q 042753 312 PDERHASQDCGVLPDGFEDRV-----AGRGYVIRGWSQQV-AILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMD--- 382 (473)
Q Consensus 312 ~~~~~~~~~~~~lp~~~~~~~-----~~~nv~v~~~~pq~-~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~--- 382 (473)
. .|..-.++. +.+++.+..|-.+. ++|..++. +|+-||+||++|-|++|+|.+++|..
T Consensus 260 ~-----------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~ 326 (400)
T COG4671 260 F-----------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPR 326 (400)
T ss_pred C-----------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCc
Confidence 3 554333322 24689999998765 47777776 99999999999999999999999985
Q ss_pred ccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc
Q 042753 383 ADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 383 ~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~ 426 (473)
.+|-.-|.|++ ++|+.-.+- .++++++.+.++|...++.+
T Consensus 327 eEQliRA~Rl~-~LGL~dvL~---pe~lt~~~La~al~~~l~~P 366 (400)
T COG4671 327 EEQLIRAQRLE-ELGLVDVLL---PENLTPQNLADALKAALARP 366 (400)
T ss_pred HHHHHHHHHHH-hcCcceeeC---cccCChHHHHHHHHhcccCC
Confidence 49999999999 889988888 78999999999999999844
No 39
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.66 E-value=5.5e-14 Score=139.09 Aligned_cols=168 Identities=14% Similarity=0.254 Sum_probs=116.3
Q ss_pred CCCcEEEEEeCCcccCCHHHHHHHHHHHH-h-CCCcEEEEEeCCCccCCcccCCCCchhhHHhh-cCCCeEeecCccHH-
Q 042753 271 RDESVVYVCFGSRYVLTAKQIHELAAALE-K-TDVDFVYCVREPDERHASQDCGVLPDGFEDRV-AGRGYVIRGWSQQV- 346 (473)
Q Consensus 271 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~-~-~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~pq~- 346 (473)
.++++|+++.|+... ...+..+++++. . .+.+++++.+.+. .+-+.+.+.. ...++.+.+|+.+.
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~---------~l~~~l~~~~~~~~~v~~~G~~~~~~ 268 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK---------ELKRSLTAKFKSNENVLILGYTKHMN 268 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH---------HHHHHHHHHhccCCCeEEEeccchHH
Confidence 357888998898752 233445555543 2 3456766666541 1112233222 23578888999654
Q ss_pred HhhhccCccceeeccCchhHHHHHhhCCeEecC-cccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCC
Q 042753 347 AILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTW-PMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDG 425 (473)
Q Consensus 347 ~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~ 425 (473)
++++.+++ +|+.+|..|+.||++.|+|+|+. |..+.|..|+..+.+. |+|+... +.+++.++|.++++|
T Consensus 269 ~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~-------~~~~l~~~i~~ll~~ 338 (391)
T PRK13608 269 EWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD-------TPEEAIKIVASLTNG 338 (391)
T ss_pred HHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC-------CHHHHHHHHHHHhcC
Confidence 58999997 99998888999999999999998 7767778999999955 9998765 688899999999988
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 042753 426 PRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 426 ~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~ 464 (473)
+ +.. +++++..++. ....+.++.++++++.+...
T Consensus 339 ~-~~~---~~m~~~~~~~-~~~~s~~~i~~~l~~l~~~~ 372 (391)
T PRK13608 339 N-EQL---TNMISTMEQD-KIKYATQTICRDLLDLIGHS 372 (391)
T ss_pred H-HHH---HHHHHHHHHh-cCCCCHHHHHHHHHHHhhhh
Confidence 6 433 3344444433 33466777777877776553
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.62 E-value=2.2e-13 Score=134.85 Aligned_cols=351 Identities=15% Similarity=0.093 Sum_probs=179.9
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
|+||++...+..||+.|.. ++++|.++++++.+++.... .++....+ ..+.+..++. .++ ...+..+ .
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~l~~---~g~--~~~~~~~-~ 68 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAGCE---SLFDMEELAV---MGL--VEVLPRL-P 68 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCCCc---cccCHHHhhh---ccH--HHHHHHH-H
Confidence 5699999999999999999 99999998888888875432 23332110 1222222221 010 0111111 1
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeCCC-cchH--HHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCCcc
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSDFF-LGWT--QGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVDAL 161 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D~~-~~~~--~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 161 (473)
... .....+.+++++. +||+|++-.. ..+. ...|++.|||++.+.....
T Consensus 69 ~~~-~~~~~~~~~l~~~--kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~------------------------- 120 (380)
T PRK00025 69 RLL-KIRRRLKRRLLAE--PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSV------------------------- 120 (380)
T ss_pred HHH-HHHHHHHHHHHHc--CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCch-------------------------
Confidence 111 2345778899999 9999886322 2233 3446788999876422100
Q ss_pred ccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEec-cCC
Q 042753 162 VSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAVG-PVL 240 (473)
Q Consensus 162 ~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~vG-pl~ 240 (473)
+.+ ......+. ....+.++..+ +. +... +.. .+ -.+.++| |+.
T Consensus 121 -----------~~~---------------~~~~~~~~---~~~~d~i~~~~-~~-~~~~---~~~-~g-~~~~~~G~p~~ 164 (380)
T PRK00025 121 -----------WAW---------------RQGRAFKI---AKATDHVLALF-PF-EAAF---YDK-LG-VPVTFVGHPLA 164 (380)
T ss_pred -----------hhc---------------CchHHHHH---HHHHhhheeCC-cc-CHHH---HHh-cC-CCeEEECcCHH
Confidence 000 00000000 11112222211 11 1111 111 22 2477888 333
Q ss_pred CCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHh-----CCCcEEEEEeCCCcc
Q 042753 241 PPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEK-----TDVDFVYCVREPDER 315 (473)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~~~~~ 315 (473)
... . .......+.+.+.-..++++|++..||...........++++++. .+.+++|+.+.+.
T Consensus 165 ~~~-~----------~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~-- 231 (380)
T PRK00025 165 DAI-P----------LLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPK-- 231 (380)
T ss_pred Hhc-c----------cccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChh--
Confidence 221 1 011123333334332345677777776543222233444554432 2346676655321
Q ss_pred CCcccCCCCchhhHHhhcC---CCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccc--------c
Q 042753 316 HASQDCGVLPDGFEDRVAG---RGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDA--------D 384 (473)
Q Consensus 316 ~~~~~~~~lp~~~~~~~~~---~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~--------D 384 (473)
.-+.+.+.... -++.+.. -.-..+++.+++ +|+.+|.+++ ||+++|+|+|++|... .
T Consensus 232 --------~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~ 299 (380)
T PRK00025 232 --------RREQIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKR 299 (380)
T ss_pred --------hHHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHH
Confidence 11223222221 1233322 123568899997 9999998877 9999999999885321 1
Q ss_pred chhh-----HHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 042753 385 QYTN-----AQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIK 459 (473)
Q Consensus 385 Q~~n-----a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~ 459 (473)
|..| +..+++. +++..+. ....+++.|.+++.++++|+ +.+++..+-.+.+.+.. ..+++++.++.+.+
T Consensus 300 ~~~~~~~~l~~~~~~~-~~~~~~~---~~~~~~~~l~~~i~~ll~~~-~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~ 373 (380)
T PRK00025 300 LVKVPYVSLPNLLAGR-ELVPELL---QEEATPEKLARALLPLLADG-ARRQALLEGFTELHQQL-RCGADERAAQAVLE 373 (380)
T ss_pred HHcCCeeehHHHhcCC-Ccchhhc---CCCCCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 2111 2333322 3344455 56789999999999999997 55544333333333222 33556666666665
Q ss_pred HHH
Q 042753 460 RIN 462 (473)
Q Consensus 460 ~~~ 462 (473)
.+.
T Consensus 374 ~~~ 376 (380)
T PRK00025 374 LLK 376 (380)
T ss_pred Hhh
Confidence 544
No 41
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.54 E-value=4e-12 Score=125.64 Aligned_cols=173 Identities=19% Similarity=0.174 Sum_probs=109.2
Q ss_pred hhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHh---------CCCcEEEEEeCCCccCCcccCCCCchhhHHh
Q 042753 261 HDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEK---------TDVDFVYCVREPDERHASQDCGVLPDGFEDR 331 (473)
Q Consensus 261 ~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~---------~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~ 331 (473)
+.+.+-+.-.+++++|++..|+..... +..+++++.+ .+.+++++++.+. .+-+.+.+.
T Consensus 194 ~~~r~~~gl~~~~~~il~~Gg~~g~~~---~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~---------~~~~~L~~~ 261 (382)
T PLN02605 194 DELRRELGMDEDLPAVLLMGGGEGMGP---LEETARALGDSLYDKNLGKPIGQVVVICGRNK---------KLQSKLESR 261 (382)
T ss_pred HHHHHHcCCCCCCcEEEEECCCccccc---HHHHHHHHHHhhccccccCCCceEEEEECCCH---------HHHHHHHhh
Confidence 344444444345777877777654322 2223333322 3456677777541 111222222
Q ss_pred hcCCCeEeecCccH-HHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccch-hhHHHHHHHhcceEEeccCCCCC
Q 042753 332 VAGRGYVIRGWSQQ-VAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQY-TNAQLLVDQLGVGIRVGEGTRNI 409 (473)
Q Consensus 332 ~~~~nv~v~~~~pq-~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~-~na~rv~~~~G~G~~l~~~~~~~ 409 (473)
....++.+.+|+++ .++++.+++ +|+.+|.+|+.||++.|+|+|+.+....|. .|+..+.+. |.|+...
T Consensus 262 ~~~~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~~------ 332 (382)
T PLN02605 262 DWKIPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFSE------ 332 (382)
T ss_pred cccCCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-CceeecC------
Confidence 12346778899885 458899997 999999999999999999999988666665 688888855 9987553
Q ss_pred CCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 042753 410 PESDELARLLAQSVDG-PRRERLKARELSGAALSAVVKGGSSDRDLNDFIKR 460 (473)
Q Consensus 410 ~~~~~l~~~i~~~l~~-~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~ 460 (473)
+.++|.++|.+++.+ + +.+ +++++..++. ....++++.++.+++.
T Consensus 333 -~~~~la~~i~~ll~~~~-~~~---~~m~~~~~~~-~~~~a~~~i~~~l~~~ 378 (382)
T PLN02605 333 -SPKEIARIVAEWFGDKS-DEL---EAMSENALKL-ARPEAVFDIVHDLHEL 378 (382)
T ss_pred -CHHHHHHHHHHHHcCCH-HHH---HHHHHHHHHh-cCCchHHHHHHHHHHH
Confidence 689999999999987 4 333 3344444332 2334455555555544
No 42
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.48 E-value=2.8e-15 Score=130.07 Aligned_cols=137 Identities=16% Similarity=0.274 Sum_probs=97.8
Q ss_pred EEEEEeCCcccCC-HHHHHHHHHHHHh--CCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCcc-HHHhhh
Q 042753 275 VVYVCFGSRYVLT-AKQIHELAAALEK--TDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQ-QVAILR 350 (473)
Q Consensus 275 ~V~vs~Gs~~~~~-~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~p-q~~lL~ 350 (473)
+|+|+.||..... ...+..+...+.. .+.+++++++... . +.....+.+ ...++.+.+|++ ..+++.
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~----~---~~~~~~~~~--~~~~v~~~~~~~~m~~~m~ 71 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNN----Y---EELKIKVEN--FNPNVKVFGFVDNMAELMA 71 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCE----C---HHHCCCHCC--TTCCCEEECSSSSHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCc----H---HHHHHHHhc--cCCcEEEEechhhHHHHHH
Confidence 5899999875321 1112223333333 3578888988753 0 111111100 115788999999 788999
Q ss_pred ccCccceeeccCchhHHHHHhhCCeEecCcccc----cchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc
Q 042753 351 HKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDA----DQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 351 ~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~----DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~ 426 (473)
.+++ +|||||.||+.|++++|+|+|++|... +|..||..+++. |+|+.+. ....+.+.|.++|.++++++
T Consensus 72 ~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~---~~~~~~~~L~~~i~~l~~~~ 145 (167)
T PF04101_consen 72 AADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLD---ESELNPEELAEAIEELLSDP 145 (167)
T ss_dssp HHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSE---CCC-SCCCHHHHHHCHCCCH
T ss_pred HcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccC---cccCCHHHHHHHHHHHHcCc
Confidence 9998 999999999999999999999999998 999999999965 9999999 77888999999999999987
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.44 E-value=1.2e-10 Score=114.78 Aligned_cols=351 Identities=16% Similarity=0.135 Sum_probs=183.0
Q ss_pred CCCChHHHHHHHHHHHh--CCCeEE---EEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCCh---hhHHHHHH-H
Q 042753 15 TSGHIIPLLDLTNRLLT--LGLNVT---VLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPA---TRLLKFMR-V 85 (473)
Q Consensus 15 ~~GH~~p~l~La~~L~~--rGh~Vt---~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~---~~~~~~~~-~ 85 (473)
+.|-=.-.++||++|.+ .|++|. |+++..-.+ +...+. .+ .+..+|. .++... ..+..... .
T Consensus 6 ghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e---~~~ip~--~g-~~~~~~s---gg~~~~~~~~~~~~~~~gl 76 (396)
T TIGR03492 6 GHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQ---NLGIPI--IG-PTKELPS---GGFSYQSLRGLLRDLRAGL 76 (396)
T ss_pred CchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHh---hCCCce--eC-CCCCCCC---CCccCCCHHHHHHHHHhhH
Confidence 44555567889999998 699999 999884432 211100 02 3333332 223211 11222222 1
Q ss_pred HHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCCccccCC
Q 042753 86 LRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVDALVSFP 165 (473)
Q Consensus 86 ~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p 165 (473)
.. ...+. ..+++++..+||+||.---+. .+.+|...|+|++.+.+.-.- +.+... +
T Consensus 77 ~~-~~~~~-~~~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn------~~~~~~---------------~ 132 (396)
T TIGR03492 77 VG-LTLGQ-WRALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSD------YYWESG---------------P 132 (396)
T ss_pred HH-HHHHH-HHHHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccc------eeecCC---------------C
Confidence 11 22222 223333322789998655444 788899999999986544210 000000 0
Q ss_pred CCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhc-cCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEec-cCCCCC
Q 042753 166 RVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMAN-KTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAVG-PVLPPD 243 (473)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~vG-pl~~~~ 243 (473)
+.+ ..+++.... .. .+..+ +..... ..+..+...+ +.... .+.. .+ -++.++| |+...-
T Consensus 133 ~~~---------~~~~~~~~~-G~-~~~p~-e~n~l~~~~a~~v~~~~--~~t~~---~l~~-~g-~k~~~vGnPv~d~l 193 (396)
T TIGR03492 133 RRS---------PSDEYHRLE-GS-LYLPW-ERWLMRSRRCLAVFVRD--RLTAR---DLRR-QG-VRASYLGNPMMDGL 193 (396)
T ss_pred CCc---------cchhhhccC-CC-ccCHH-HHHHhhchhhCEEeCCC--HHHHH---HHHH-CC-CeEEEeCcCHHhcC
Confidence 000 000011000 00 11111 111122 2233333222 22222 2222 23 4799999 666554
Q ss_pred CcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHh----CCCcEEEEEeCCCccCCcc
Q 042753 244 DDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEK----TDVDFVYCVREPDERHASQ 319 (473)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~----~~~~~i~~~~~~~~~~~~~ 319 (473)
. ..... -++ .++++|.+--||...-....+..++++++. .+..|++.+..+.
T Consensus 194 -~-----------~~~~~----~l~--~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~------ 249 (396)
T TIGR03492 194 -E-----------PPERK----PLL--TGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL------ 249 (396)
T ss_pred -c-----------ccccc----ccC--CCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC------
Confidence 2 00101 122 356789998999854333334445555544 3567888773321
Q ss_pred cCCCCchhhHHhhc------------------CCCeEeecCc-cHHHhhhccCccceeeccCchhHHHHHhhCCeEecCc
Q 042753 320 DCGVLPDGFEDRVA------------------GRGYVIRGWS-QQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWP 380 (473)
Q Consensus 320 ~~~~lp~~~~~~~~------------------~~nv~v~~~~-pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P 380 (473)
+ . +.+.+... .+++.+..+. ...++++.+++ +|+-+|..| .|+...|+|+|++|
T Consensus 250 --~-~-~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip 322 (396)
T TIGR03492 250 --S-L-EKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLP 322 (396)
T ss_pred --C-H-HHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEe
Confidence 0 1 11211111 1234444444 34668999997 999999766 99999999999999
Q ss_pred ccccchhhHHHHHHH---hcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHH-HHHHHHHHHHhcCCChHHHHHH
Q 042753 381 MDADQYTNAQLLVDQ---LGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKAR-ELSGAALSAVVKGGSSDRDLND 456 (473)
Q Consensus 381 ~~~DQ~~na~rv~~~---~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~-~~~~~~~~~~~~~gs~~~~~~~ 456 (473)
....|. |+...++. .|.++.+. ..+.+.|.+++.++++|+ +..++.. ..+..+ ..++++++.++.
T Consensus 323 ~~~~q~-na~~~~~~~~l~g~~~~l~-----~~~~~~l~~~l~~ll~d~-~~~~~~~~~~~~~l----g~~~a~~~ia~~ 391 (396)
T TIGR03492 323 GKGPQF-TYGFAEAQSRLLGGSVFLA-----SKNPEQAAQVVRQLLADP-ELLERCRRNGQERM----GPPGASARIAES 391 (396)
T ss_pred CCCCHH-HHHHHHhhHhhcCCEEecC-----CCCHHHHHHHHHHHHcCH-HHHHHHHHHHHHhc----CCCCHHHHHHHH
Confidence 877776 88766631 26666665 345599999999999986 5554444 333333 344555555555
Q ss_pred HHH
Q 042753 457 FIK 459 (473)
Q Consensus 457 ~~~ 459 (473)
+.+
T Consensus 392 i~~ 394 (396)
T TIGR03492 392 ILK 394 (396)
T ss_pred HHH
Confidence 544
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.40 E-value=1.3e-09 Score=106.47 Aligned_cols=346 Identities=14% Similarity=0.092 Sum_probs=179.4
Q ss_pred EEEEEc---CCC-CCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHH
Q 042753 7 HILVYP---FPT-SGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKF 82 (473)
Q Consensus 7 ~Il~~~---~~~-~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 82 (473)
||++++ .|. .|+...+..|+++|.++||+|++++.......-... ....+.....+...... . .
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~----~ 68 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPA------RVVPVPSVPLPGYPEIR--L----A 68 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCC------CceeecccccCcccceE--e----c
Confidence 465544 233 699999999999999999999999987432111000 01111111111000000 0 0
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc---hHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCC
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILSDFFLG---WTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVD 159 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~---~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 159 (473)
. .....+.+.++.. +||+|++..... .+..++++.++|++.......... . ..
T Consensus 69 ~-----~~~~~~~~~~~~~--~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~--~~-------------- 124 (364)
T cd03814 69 L-----PPRRRVRRLLDAF--APDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEY-L--RY-------------- 124 (364)
T ss_pred c-----cchhhHHHHHHhc--CCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHH-h--hh--------------
Confidence 0 1123455566778 999998775433 345777889999887544322110 0 00
Q ss_pred ccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHh-hhccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEecc
Q 042753 160 ALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNM-MANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAVGP 238 (473)
Q Consensus 160 ~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~vGp 238 (473)
.. ............ ......+.++..+-...+ .+..... +++..+.+
T Consensus 125 -------~~-------------------~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~-----~~~~~~~-~~~~~~~~ 172 (364)
T cd03814 125 -------YG-------------------LGPLSWLAWAYLRWFHNRADRVLVPSPSLAD-----ELRARGF-RRVRLWPR 172 (364)
T ss_pred -------cc-------------------cchHhHhhHHHHHHHHHhCCEEEeCCHHHHH-----HHhccCC-CceeecCC
Confidence 00 000001101111 122344555555543322 1111111 34554443
Q ss_pred CCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCccc-CCHHHHHHHHHHHHhC-CCcEEEEEeCCCccC
Q 042753 239 VLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYV-LTAKQIHELAAALEKT-DVDFVYCVREPDERH 316 (473)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~ 316 (473)
-.... . .... .........+ . ..++.+++..|+... ...+.+.+++..+.+. +.+++ .++...
T Consensus 173 g~~~~-~----~~~~---~~~~~~~~~~-~--~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~-i~G~~~--- 237 (364)
T cd03814 173 GVDTE-L----FHPR---RRDEALRARL-G--PPDRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLV-IVGDGP--- 237 (364)
T ss_pred Ccccc-c----cCcc---cccHHHHHHh-C--CCCCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEE-EEeCCc---
Confidence 33222 1 0000 1111112222 2 234567777887643 2334444444444332 34444 344321
Q ss_pred CcccCCCCchhhHHhhcCCCeEeecCccHHH---hhhccCccceeeccC----chhHHHHHhhCCeEecCcccccchhhH
Q 042753 317 ASQDCGVLPDGFEDRVAGRGYVIRGWSQQVA---ILRHKAVGAFLTHCG----WNSVLEGVSAGVVMLTWPMDADQYTNA 389 (473)
Q Consensus 317 ~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~---lL~~~~v~~~ItHgG----~~s~~eal~~GvP~l~~P~~~DQ~~na 389 (473)
. .+.+. ....|+.+.+|+++.+ ++..+++ +|..+. .++++||+++|+|+|+.+..+ +.
T Consensus 238 -----~--~~~~~--~~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~ 302 (364)
T cd03814 238 -----A--RARLE--ARYPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PA 302 (364)
T ss_pred -----h--HHHHh--ccCCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----ch
Confidence 0 01111 2346888889998765 7888887 775543 478999999999999887553 45
Q ss_pred HHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042753 390 QLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRI 461 (473)
Q Consensus 390 ~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 461 (473)
..+.+. +.|...+ .-+.+++.++|.++++|+ ..+++..+-+.... ..-+.+...+++++.+
T Consensus 303 ~~i~~~-~~g~~~~-----~~~~~~l~~~i~~l~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 303 DIVTDG-ENGLLVE-----PGDAEAFAAALAALLADP-ELRRRMAARARAEA----ERRSWEAFLDNLLEAY 363 (364)
T ss_pred hhhcCC-cceEEcC-----CCCHHHHHHHHHHHHcCH-HHHHHHHHHHHHHH----hhcCHHHHHHHHHHhh
Confidence 555544 7887776 446788999999999987 54443333332221 2245666666666543
No 45
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.34 E-value=5.5e-13 Score=112.00 Aligned_cols=120 Identities=20% Similarity=0.182 Sum_probs=80.9
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCCh-hhHHHHHH--
Q 042753 8 ILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPA-TRLLKFMR-- 84 (473)
Q Consensus 8 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~-~~~~~~~~-- 84 (473)
|+|.+.|+.||++|+++||++|++|||+|++++++.+.+.+++. |++|..++.+ ..+... .....+..
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~-------Gl~~~~~~~~--~~~~~~~~~~~~~~~~~ 71 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA-------GLEFVPIPGD--SRLPRSLEPLANLRRLA 71 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT-------T-EEEESSSC--GGGGHHHHHHHHHHCHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc-------CceEEEecCC--cCcCcccchhhhhhhHH
Confidence 78999999999999999999999999999999999999999766 8999988753 011110 01111111
Q ss_pred ----HHHHHhhHHHHHHHhcC----C--CCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHH
Q 042753 85 ----VLRELHYPALLDWFKSH----P--SPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAF 137 (473)
Q Consensus 85 ----~~~~~~~~~l~~~l~~~----~--~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~ 137 (473)
.+. .....+.+...+. . ...|+++.+.....+..+|+++|||++.....+.+
T Consensus 72 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 72 RLIRGLE-EAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHH-HHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred HHhhhhh-HHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 111 1112222222221 1 15788888887778899999999999998776654
No 46
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=1.1e-09 Score=97.66 Aligned_cols=296 Identities=15% Similarity=0.140 Sum_probs=183.8
Q ss_pred cEEEEEcCC----CCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHH
Q 042753 6 AHILVYPFP----TSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLK 81 (473)
Q Consensus 6 ~~Il~~~~~----~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~ 81 (473)
|||+|.+-+ |.||+..++.||++|.++|..++|++.++..+.+.... .++.+....
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~-----~~f~~~~~~--------------- 60 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVY-----EGFKVLEGR--------------- 60 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhh-----hhccceeee---------------
Confidence 578877733 56999999999999999999999999997655443320 112211100
Q ss_pred HHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcch---HHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCC
Q 042753 82 FMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGW---TQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNV 158 (473)
Q Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~---~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 158 (473)
....+++. ++|++|.|..... .-.+..+.+.+.+.+-......+.-
T Consensus 61 ------------~~n~ik~~--k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~d----------------- 109 (318)
T COG3980 61 ------------GNNLIKEE--KFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFKD----------------- 109 (318)
T ss_pred ------------cccccccc--cCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchhh-----------------
Confidence 01157788 9999999998763 3467778899998873332211100
Q ss_pred CccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEecc
Q 042753 159 DALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAVGP 238 (473)
Q Consensus 159 ~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~vGp 238 (473)
. .-.......... .++. .+....++.||
T Consensus 110 -------------------~-------------d~ivN~~~~a~~-~y~~-------------------v~~k~~~~lGp 137 (318)
T COG3980 110 -------------------N-------------DLIVNAILNAND-YYGL-------------------VPNKTRYYLGP 137 (318)
T ss_pred -------------------h-------------Hhhhhhhhcchh-hccc-------------------cCcceEEEecC
Confidence 0 000000000000 0000 11023467776
Q ss_pred CCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCc
Q 042753 239 VLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHAS 318 (473)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 318 (473)
=...-.+ ++ ....++. ... +..-|+|++|..- +.....+++..|.+.++.+-++++..
T Consensus 138 ~y~~lr~--eF-------~~~r~~~---~~r--~~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~------ 195 (318)
T COG3980 138 GYAPLRP--EF-------YALREEN---TER--PKRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSS------ 195 (318)
T ss_pred CceeccH--HH-------HHhHHHH---hhc--chheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCC------
Confidence 4333201 01 1111111 111 3456999999863 45566778888888787777777754
Q ss_pred ccCCCCchhhHHhhc-CCCeEeecCcc-HHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHh
Q 042753 319 QDCGVLPDGFEDRVA-GRGYVIRGWSQ-QVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQL 396 (473)
Q Consensus 319 ~~~~~lp~~~~~~~~-~~nv~v~~~~p-q~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~ 396 (473)
++-+.++.++.. .+|+....... ...++..++. .|+-||. |+.|++.-|+|.+++|+...|--.|...+ ++
T Consensus 196 ---~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~-~l 268 (318)
T COG3980 196 ---NPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFE-AL 268 (318)
T ss_pred ---CcchhHHHHHHhhCCCeeeEecchhHHHHHHhcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHH-hc
Confidence 223334444333 45666555554 4568999996 8888775 89999999999999999999999999999 55
Q ss_pred cceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 042753 397 GVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSG 438 (473)
Q Consensus 397 G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~ 438 (473)
|+-..+. -. +........+.++.+|. ..+.+...-++
T Consensus 269 g~~~~l~---~~-l~~~~~~~~~~~i~~d~-~~rk~l~~~~~ 305 (318)
T COG3980 269 GIIKQLG---YH-LKDLAKDYEILQIQKDY-ARRKNLSFGSK 305 (318)
T ss_pred Cchhhcc---CC-CchHHHHHHHHHhhhCH-HHhhhhhhccc
Confidence 8776665 33 77777888888898886 65555444333
No 47
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.26 E-value=3.6e-08 Score=100.23 Aligned_cols=129 Identities=18% Similarity=0.188 Sum_probs=84.3
Q ss_pred cEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHH---hh
Q 042753 274 SVVYVCFGSRYVLTAKQIHELAAALEKT-DVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVA---IL 349 (473)
Q Consensus 274 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~---lL 349 (473)
..+++..|+... ...+..+++++++. +.+++ .++... ..+.+.+.....++...+|+++.+ ++
T Consensus 263 ~~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~-ivG~G~----------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~ 329 (465)
T PLN02871 263 KPLIVYVGRLGA--EKNLDFLKRVMERLPGARLA-FVGDGP----------YREELEKMFAGTPTVFTGMLQGDELSQAY 329 (465)
T ss_pred CeEEEEeCCCch--hhhHHHHHHHHHhCCCcEEE-EEeCCh----------HHHHHHHHhccCCeEEeccCCHHHHHHHH
Confidence 445566788753 33455677777765 44444 445421 123444444456788889998654 77
Q ss_pred hccCccceeeccC----chhHHHHHhhCCeEecCcccccchhhHHHHHH--HhcceEEeccCCCCCCCHHHHHHHHHHHh
Q 042753 350 RHKAVGAFLTHCG----WNSVLEGVSAGVVMLTWPMDADQYTNAQLLVD--QLGVGIRVGEGTRNIPESDELARLLAQSV 423 (473)
Q Consensus 350 ~~~~v~~~ItHgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~--~~G~G~~l~~~~~~~~~~~~l~~~i~~~l 423 (473)
..+++ +|.-.. ..++.||+++|+|+|+.... .....+.+ .-+.|..++ .-+.+++.++|.+++
T Consensus 330 ~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~~~G~lv~-----~~d~~~la~~i~~ll 398 (465)
T PLN02871 330 ASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEGKTGFLYT-----PGDVDDCVEKLETLL 398 (465)
T ss_pred HHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCCCceEEeC-----CCCHHHHHHHHHHHH
Confidence 88887 664332 44789999999999987543 23334443 126788776 246899999999999
Q ss_pred CCc
Q 042753 424 DGP 426 (473)
Q Consensus 424 ~~~ 426 (473)
+|+
T Consensus 399 ~~~ 401 (465)
T PLN02871 399 ADP 401 (465)
T ss_pred hCH
Confidence 987
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.25 E-value=2e-08 Score=97.88 Aligned_cols=137 Identities=16% Similarity=0.107 Sum_probs=83.1
Q ss_pred CCcEEEEEeCCccc-CCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHH---
Q 042753 272 DESVVYVCFGSRYV-LTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVA--- 347 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~--- 347 (473)
.++.+++..|+... ...+.+.+.+..+.+.+.++++. +... . ............++.+.+|+++.+
T Consensus 189 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~-G~~~--------~-~~~~~~~~~~~~~v~~~g~~~~~~~~~ 258 (359)
T cd03823 189 GGRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIV-GNGL--------E-LEEESYELEGDPRVEFLGAYPQEEIDD 258 (359)
T ss_pred CCceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEE-cCch--------h-hhHHHHhhcCCCeEEEeCCCCHHHHHH
Confidence 45677778888753 22333333333333334555443 4331 1 001000011246788889997655
Q ss_pred hhhccCccceee-----ccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHH
Q 042753 348 ILRHKAVGAFLT-----HCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQS 422 (473)
Q Consensus 348 lL~~~~v~~~It-----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~ 422 (473)
++..+++ +|. -|...++.||+++|+|+|+.+. ..+...+... +.|...+ .-+.+++.+++.++
T Consensus 259 ~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~-----~~d~~~l~~~i~~l 326 (359)
T cd03823 259 FYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFP-----PGDAEDLAAALERL 326 (359)
T ss_pred HHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEEC-----CCCHHHHHHHHHHH
Confidence 5888887 552 2334479999999999998654 3455666633 4787777 33589999999999
Q ss_pred hCCcHHHHH
Q 042753 423 VDGPRRERL 431 (473)
Q Consensus 423 l~~~~~~~~ 431 (473)
++|+ ...+
T Consensus 327 ~~~~-~~~~ 334 (359)
T cd03823 327 IDDP-DLLE 334 (359)
T ss_pred HhCh-HHHH
Confidence 9986 4433
No 49
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.20 E-value=4.8e-08 Score=96.19 Aligned_cols=352 Identities=13% Similarity=0.094 Sum_probs=175.6
Q ss_pred cEEEEEcCCCC-CChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 6 AHILVYPFPTS-GHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 6 ~~Il~~~~~~~-GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
+||++++.|.. |.-.-...+++.|.++||+|++++.......... .+++.+..++... .+.... .
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~------~~~~~~~~~~~~~---~~~~~~-----~ 66 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSRPFRLDEY------SPNIFFHEVEVPQ---YPLFQY-----P 66 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCCCcchhhh------ccCeEEEEecccc---cchhhc-----c
Confidence 47877776544 7777799999999999999999987532211111 1245554333211 110000 0
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHh----CCCcEEEecchHHHHHHHHhhhccCCCCCCCCCC
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSDFFLG--WTQGLAAEL----GLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNV 158 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~----giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 158 (473)
.........+.++++.. +||+|.+..... ....++.++ ++|+|.........
T Consensus 67 ~~~~~~~~~l~~~i~~~--~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~-------------------- 124 (371)
T cd04962 67 PYDLALASKIAEVAKRY--KLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDIT-------------------- 124 (371)
T ss_pred hhHHHHHHHHHHHHhcC--CccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccc--------------------
Confidence 01112345677778888 999998764332 223334332 78987643221000
Q ss_pred CccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEecc
Q 042753 159 DALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAVGP 238 (473)
Q Consensus 159 ~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~vGp 238 (473)
..+. ....... ........+.++..|-...+ ...... ... .++..+..
T Consensus 125 -----~~~~--------------------~~~~~~~---~~~~~~~~d~ii~~s~~~~~-~~~~~~--~~~-~~i~vi~n 172 (371)
T cd04962 125 -----LVGQ--------------------DPSFQPA---TRFSIEKSDGVTAVSESLRQ-ETYELF--DIT-KEIEVIPN 172 (371)
T ss_pred -----cccc--------------------cccchHH---HHHHHhhCCEEEEcCHHHHH-HHHHhc--CCc-CCEEEecC
Confidence 0000 0000001 11123445555555532211 111111 012 34555554
Q ss_pred CCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCccc-CCHHHHHHHHHHHHh-CCCcEEEEEeCCCccC
Q 042753 239 VLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYV-LTAKQIHELAAALEK-TDVDFVYCVREPDERH 316 (473)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~-~~~~~i~~~~~~~~~~ 316 (473)
..... . .. ....+...+.+.. .....+++..|.... ...+.+-+.+..+.+ .+.++++.-....
T Consensus 173 ~~~~~-~-----~~----~~~~~~~~~~~~~-~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~~--- 238 (371)
T cd04962 173 FVDED-R-----FR----PKPDEALKRRLGA-PEGEKVLIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDGPE--- 238 (371)
T ss_pred CcCHh-h-----cC----CCchHHHHHhcCC-CCCCeEEEEecccccccCHHHHHHHHHHHHhcCCceEEEEcCCcC---
Confidence 33322 1 00 1111222222222 234566777787753 222333333333332 3455544433221
Q ss_pred CcccCCCCchhhHHhhc-CCCeEeecCccH-HHhhhccCccceee----ccCchhHHHHHhhCCeEecCcccccchhhHH
Q 042753 317 ASQDCGVLPDGFEDRVA-GRGYVIRGWSQQ-VAILRHKAVGAFLT----HCGWNSVLEGVSAGVVMLTWPMDADQYTNAQ 390 (473)
Q Consensus 317 ~~~~~~~lp~~~~~~~~-~~nv~v~~~~pq-~~lL~~~~v~~~It----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 390 (473)
.+.+-+ ..++.. ..++...++.++ .+++..+++ +|. -|...++.||+++|+|+|+... ...+.
T Consensus 239 ----~~~~~~-~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e 307 (371)
T cd04962 239 ----RSPAER-LARELGLQDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPE 307 (371)
T ss_pred ----HHHHHH-HHHHcCCCceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchh
Confidence 011111 111111 346777787765 457888887 552 2345699999999999998643 34555
Q ss_pred HHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 391 LLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP---RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 391 rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~---~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
.+.+. ..|...+ .-+.+++.++|.++++++ .++++++++. + ...-+.+..++++++.+++
T Consensus 308 ~i~~~-~~G~~~~-----~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~---~----~~~fs~~~~~~~~~~~y~~ 370 (371)
T cd04962 308 VVKHG-ETGFLVD-----VGDVEAMAEYALSLLEDDELWQEFSRAARNR---A----AERFDSERIVPQYEALYRR 370 (371)
T ss_pred hhcCC-CceEEcC-----CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH---H----HHhCCHHHHHHHHHHHHHh
Confidence 56533 4676665 347899999999999886 2233333332 1 2234466666777766543
No 50
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.19 E-value=3e-08 Score=97.08 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=81.4
Q ss_pred CCcEEEEEeCCccc-CCHHHHHHHHHHHHh--CCCcEEEEEeCCCccCCcccCCCCchhhHHh---h-cCCCeEeecCcc
Q 042753 272 DESVVYVCFGSRYV-LTAKQIHELAAALEK--TDVDFVYCVREPDERHASQDCGVLPDGFEDR---V-AGRGYVIRGWSQ 344 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~---~-~~~nv~v~~~~p 344 (473)
+++.+++..|+... ...+.+-.++..+.+ .+.++++.-.... .+.+.+. . ..+++...+++|
T Consensus 200 ~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~-----------~~~~~~~~~~~~~~~~v~~~g~~~ 268 (374)
T cd03817 200 EDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPE-----------REELEELARELGLADRVIFTGFVP 268 (374)
T ss_pred CCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCch-----------HHHHHHHHHHcCCCCcEEEeccCC
Confidence 45567777888753 233444444444443 3344444433221 1122221 1 246788889998
Q ss_pred HHH---hhhccCccceeec----cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHH
Q 042753 345 QVA---ILRHKAVGAFLTH----CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELAR 417 (473)
Q Consensus 345 q~~---lL~~~~v~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ 417 (473)
+.+ ++..+++ +|.- |...++.||+++|+|+|+... ...+..+.+. +.|..++ ... . ++.+
T Consensus 269 ~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~---~~~--~-~~~~ 335 (374)
T cd03817 269 REELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFP---PGD--E-ALAE 335 (374)
T ss_pred hHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeC---CCC--H-HHHH
Confidence 755 6788887 5533 335789999999999998653 4455666633 6787777 322 2 8999
Q ss_pred HHHHHhCCc
Q 042753 418 LLAQSVDGP 426 (473)
Q Consensus 418 ~i~~~l~~~ 426 (473)
++.++++++
T Consensus 336 ~i~~l~~~~ 344 (374)
T cd03817 336 ALLRLLQDP 344 (374)
T ss_pred HHHHHHhCh
Confidence 999999987
No 51
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.18 E-value=3.7e-08 Score=96.85 Aligned_cols=340 Identities=18% Similarity=0.156 Sum_probs=168.6
Q ss_pred EEEEEcCC----CCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhc--cCCCCCCeeEEEcCCCCCCCCCChhhHH
Q 042753 7 HILVYPFP----TSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLN--ANHPSTSLQSLVLPQPKWPAGSPATRLL 80 (473)
Q Consensus 7 ~Il~~~~~----~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~--~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 80 (473)
||++++.. ..|+......+++.|.++||+|++++............ ......++.+..++..... ....+.
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 77 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYK---KNGLLK 77 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCC---ccchHH
Confidence 56666532 25999999999999999999999999764432221100 0000125555555432111 111111
Q ss_pred HHHHHHHHHhhHHHHHHH-hcCCCCCcEEEeCCCcc----hHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCC
Q 042753 81 KFMRVLRELHYPALLDWF-KSHPSPPVAILSDFFLG----WTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDP 155 (473)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l-~~~~~~pD~VV~D~~~~----~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~ 155 (473)
....... ........+. +.. +||+|++..... .+..++...++|++............ .
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~--~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~-~------------ 141 (394)
T cd03794 78 RLLNYLS-FALSALLALLKRRR--RPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAV-A------------ 141 (394)
T ss_pred HHHhhhH-HHHHHHHHHHhccc--CCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHH-H------------
Confidence 1111111 1122222222 456 899999996222 23455666699988754332110000 0
Q ss_pred CCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhh-hccCCcEEeecchHHhhHHHHHHHH-HhhCCCcE
Q 042753 156 DNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMM-ANKTSWGIVFNSFAELERVYIDHMK-KEMGHDRV 233 (473)
Q Consensus 156 ~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~le~~~~~~~~-~~~~~~~~ 233 (473)
. +. ... .....+.+..... .....+.++..+-...+ .+. ...+..++
T Consensus 142 --------~-~~-----~~~------------~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~-----~~~~~~~~~~~~ 190 (394)
T cd03794 142 --------L-GL-----LKN------------GSLLYRLLRKLERLIYRRADAIVVISPGMRE-----YLVRRGVPPEKI 190 (394)
T ss_pred --------c-cC-----ccc------------cchHHHHHHHHHHHHHhcCCEEEEECHHHHH-----HHHhcCCCcCce
Confidence 0 00 000 0000112222222 23445666655533222 111 11111355
Q ss_pred EEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCccc-CCHHHHHHHHHHHHhC-CCcEEEEEeC
Q 042753 234 WAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYV-LTAKQIHELAAALEKT-DVDFVYCVRE 311 (473)
Q Consensus 234 ~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~ 311 (473)
..+...+... . ... .........+.. ..++.+++..|+... ...+.+...+..+.+. +.++++ ++.
T Consensus 191 ~~i~~~~~~~-~----~~~----~~~~~~~~~~~~--~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i-~G~ 258 (394)
T cd03794 191 SVIPNGVDLE-L----FKP----PPADESLRKELG--LDDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLI-VGD 258 (394)
T ss_pred EEcCCCCCHH-H----cCC----ccchhhhhhccC--CCCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEE-eCC
Confidence 5555433332 1 000 000011111111 345677888888754 2334444444444443 444433 343
Q ss_pred CCccCCcccCCCCchhhHH---hhcCCCeEeecCccHHH---hhhccCccceeeccC---------chhHHHHHhhCCeE
Q 042753 312 PDERHASQDCGVLPDGFED---RVAGRGYVIRGWSQQVA---ILRHKAVGAFLTHCG---------WNSVLEGVSAGVVM 376 (473)
Q Consensus 312 ~~~~~~~~~~~~lp~~~~~---~~~~~nv~v~~~~pq~~---lL~~~~v~~~ItHgG---------~~s~~eal~~GvP~ 376 (473)
.. ..+.+.+ ....+|+.+..++++.+ ++..+++ +|.... -+++.||+++|+|+
T Consensus 259 ~~----------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pv 326 (394)
T cd03794 259 GP----------EKEELKELAKALGLDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPV 326 (394)
T ss_pred cc----------cHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcE
Confidence 21 1122222 22346888889998655 6788887 553322 23479999999999
Q ss_pred ecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHH
Q 042753 377 LTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERL 431 (473)
Q Consensus 377 l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 431 (473)
|+.+..+.+.. +... +.|...+ .-+.+++.++|.++++|+ ..++
T Consensus 327 i~~~~~~~~~~----~~~~-~~g~~~~-----~~~~~~l~~~i~~~~~~~-~~~~ 370 (394)
T cd03794 327 LASVDGESAEL----VEEA-GAGLVVP-----PGDPEALAAAILELLDDP-EERA 370 (394)
T ss_pred EEecCCCchhh----hccC-CcceEeC-----CCCHHHHHHHHHHHHhCh-HHHH
Confidence 99877654433 3322 5677776 237899999999999886 4443
No 52
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.18 E-value=1e-07 Score=94.70 Aligned_cols=81 Identities=19% Similarity=0.227 Sum_probs=61.3
Q ss_pred CCCeEeecCccHHH---hhhccCccceeec----cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCC
Q 042753 334 GRGYVIRGWSQQVA---ILRHKAVGAFLTH----CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGT 406 (473)
Q Consensus 334 ~~nv~v~~~~pq~~---lL~~~~v~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 406 (473)
..|+.+.+|+|+.+ ++..+++ ++.. |-..++.||+++|+|+|+.... .....+.+. +.|...+
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~-~~g~~~~--- 351 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDG-VTGLLVD--- 351 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCC-CCeEEeC---
Confidence 36788899999866 5788887 6643 3346899999999999987543 345556533 6888876
Q ss_pred CCCCCHHHHHHHHHHHhCCc
Q 042753 407 RNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 407 ~~~~~~~~l~~~i~~~l~~~ 426 (473)
.-+.+++.++|.++++++
T Consensus 352 --~~~~~~l~~~i~~l~~~~ 369 (398)
T cd03800 352 --PRDPEALAAALRRLLTDP 369 (398)
T ss_pred --CCCHHHHHHHHHHHHhCH
Confidence 336999999999999886
No 53
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.17 E-value=1.3e-07 Score=92.07 Aligned_cols=338 Identities=17% Similarity=0.125 Sum_probs=176.3
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhHHHH
Q 042753 16 SGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPALL 95 (473)
Q Consensus 16 ~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (473)
.|+...+..+++.|.+.||+|++++............. ....... . ............ .....+.
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~-----~~~~~~~--------~-~~~~~~~~~~~~-~~~~~~~ 78 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVG-----GIVVVRP--------P-PLLRVRRLLLLL-LLALRLR 78 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeec-----CcceecC--------C-cccccchhHHHH-HHHHHHH
Confidence 68999999999999999999999998754332111100 0000000 0 000000111111 2334567
Q ss_pred HHHhcCCCCCcEEEeCCCcchHH--HHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCCccccCCCCCCCCCC
Q 042753 96 DWFKSHPSPPVAILSDFFLGWTQ--GLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVDALVSFPRVPNCPVY 173 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~~~~--~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~l~~~~~~ 173 (473)
.+++.. ++|+|++........ ..+...++|++........... . .
T Consensus 79 ~~~~~~--~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~----------------------------~---~ 125 (374)
T cd03801 79 RLLRRE--RFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRP----------------------------G---N 125 (374)
T ss_pred HHhhhc--CCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhcc----------------------------c---c
Confidence 778888 999999988766433 5788889998876443221000 0 0
Q ss_pred CccccchhhhccCCCCCchHHH-HHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCC--CcEEEeccCCCCCCcchhhc
Q 042753 174 PWYQISHLYRTLKEGDPDWDLH-RSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGH--DRVWAVGPVLPPDDDLVESM 250 (473)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~--~~~~~vGpl~~~~~~~~~~~ 250 (473)
. ........ ..........+.++..+-...+ .+....+. .++..+.+-.... . .
T Consensus 126 ~-------------~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~-~----~ 182 (374)
T cd03801 126 E-------------LGLLLKLARALERRALRRADRIIAVSEATRE-----ELRELGGVPPEKITVIPNGVDTE-R----F 182 (374)
T ss_pred c-------------hhHHHHHHHHHHHHHHHhCCEEEEecHHHHH-----HHHhcCCCCCCcEEEecCccccc-c----c
Confidence 0 00011111 1122333445555555532222 22222220 1455555433332 1 0
Q ss_pred cCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHh---C--CCcEEEEEeCCCccCCcccCCCCc
Q 042753 251 CRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEK---T--DVDFVYCVREPDERHASQDCGVLP 325 (473)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~---~--~~~~i~~~~~~~~~~~~~~~~~lp 325 (473)
............. ..++.+++.+|+... ...+..+++++.. . +.+++ .++... ..
T Consensus 183 ------~~~~~~~~~~~~~-~~~~~~i~~~g~~~~--~k~~~~~i~~~~~~~~~~~~~~l~-i~G~~~----------~~ 242 (374)
T cd03801 183 ------RPAPRAARRRLGI-PEDEPVILFVGRLVP--RKGVDLLLEALAKLRKEYPDVRLV-IVGDGP----------LR 242 (374)
T ss_pred ------CccchHHHhhcCC-cCCCeEEEEecchhh--hcCHHHHHHHHHHHhhhcCCeEEE-EEeCcH----------HH
Confidence 0000111111111 245567778888752 2223344444443 2 23333 333321 11
Q ss_pred hhhHH----hhcCCCeEeecCccHHH---hhhccCccceee----ccCchhHHHHHhhCCeEecCcccccchhhHHHHHH
Q 042753 326 DGFED----RVAGRGYVIRGWSQQVA---ILRHKAVGAFLT----HCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVD 394 (473)
Q Consensus 326 ~~~~~----~~~~~nv~v~~~~pq~~---lL~~~~v~~~It----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~ 394 (473)
..+.+ .....++.+.+++++.+ ++..+++ +|. -|..+++.||+++|+|+|+.+. ......+.+
T Consensus 243 ~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~ 316 (374)
T cd03801 243 EELEALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVED 316 (374)
T ss_pred HHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcC
Confidence 22221 12356788889997544 6788887 553 3557799999999999998765 445555653
Q ss_pred HhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHH-HHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042753 395 QLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLK-ARELSGAALSAVVKGGSSDRDLNDFIKRI 461 (473)
Q Consensus 395 ~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~-a~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 461 (473)
. +.|...+ ..+.+++.++|.++++++ ...+. .+...+.+ ...-+.+...+++++.+
T Consensus 317 ~-~~g~~~~-----~~~~~~l~~~i~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 373 (374)
T cd03801 317 G-ETGLLVP-----PGDPEALAEAILRLLDDP-ELRRRLGEAARERV----AERFSWDRVAARTEEVY 373 (374)
T ss_pred C-cceEEeC-----CCCHHHHHHHHHHHHcCh-HHHHHHHHHHHHHH----HHhcCHHHHHHHHHHhh
Confidence 3 6787776 345899999999999987 44333 22222233 23345566666666543
No 54
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.15 E-value=2.8e-07 Score=89.95 Aligned_cols=346 Identities=18% Similarity=0.124 Sum_probs=175.8
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhHHH
Q 042753 15 TSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPAL 94 (473)
Q Consensus 15 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (473)
..|+..-...+++.|.+.||+|++++............. .......... .... ............ .....+
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~-~~~~~~~~~~~~-~~~~~~ 83 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLK-----GRLVGVERLP--VLLP-VVPLLKGPLLYL-LAARAL 83 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcc-----cccccccccc--cCcc-hhhccccchhHH-HHHHHH
Confidence 478899999999999999999999998754332221100 0000000000 0000 000000011111 333456
Q ss_pred HHHHh--cCCCCCcEEEeCCCcc---hHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCCccccCCCCCC
Q 042753 95 LDWFK--SHPSPPVAILSDFFLG---WTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVDALVSFPRVPN 169 (473)
Q Consensus 95 ~~~l~--~~~~~pD~VV~D~~~~---~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~l~~ 169 (473)
.++++ .. ++|+|++..... ....+++..++|++......... ....
T Consensus 84 ~~~l~~~~~--~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~---------------------------~~~~ 134 (377)
T cd03798 84 LKLLKLKRF--RPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVN---------------------------LLPR 134 (377)
T ss_pred HHHHhcccC--CCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhc---------------------------ccCc
Confidence 66776 77 999999886544 23466677788988754332210 0000
Q ss_pred CCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHh-hCCCcEEEeccCCCCCCcchh
Q 042753 170 CPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKE-MGHDRVWAVGPVLPPDDDLVE 248 (473)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~-~~~~~~~~vGpl~~~~~~~~~ 248 (473)
.. . ............+.++..+-...+ .+... .+..++..++...... .
T Consensus 135 ------------------~~-~--~~~~~~~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~~~~i~~~~~~~-~--- 184 (377)
T cd03798 135 ------------------KR-L--LRALLRRALRRADAVIAVSEALAD-----ELKALGIDPEKVTVIPNGVDTE-R--- 184 (377)
T ss_pred ------------------hh-h--HHHHHHHHHhcCCeEEeCCHHHHH-----HHHHhcCCCCceEEcCCCcCcc-c---
Confidence 00 0 011111233445555555532222 11221 1114666666544443 1
Q ss_pred hccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCccc-CCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchh
Q 042753 249 SMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYV-LTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDG 327 (473)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~ 327 (473)
.. ....... ..... ..++.+++..|+... ...+.+-..+..+.+....+.+.+.+.. . ..+.
T Consensus 185 -~~-----~~~~~~~-~~~~~-~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~--------~-~~~~ 247 (377)
T cd03798 185 -FS-----PADRAEA-RKLGL-PEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDG--------P-LREA 247 (377)
T ss_pred -CC-----CcchHHH-HhccC-CCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCC--------c-chHH
Confidence 00 0011111 11112 245677788888754 2233333344444333233444443321 0 1112
Q ss_pred hHHh---h-cCCCeEeecCccHH---HhhhccCcccee----eccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHh
Q 042753 328 FEDR---V-AGRGYVIRGWSQQV---AILRHKAVGAFL----THCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQL 396 (473)
Q Consensus 328 ~~~~---~-~~~nv~v~~~~pq~---~lL~~~~v~~~I----tHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~ 396 (473)
+.+. . ..+|+.+.+++++. .++..+++ +| +-|..+++.||+++|+|+|+-+.. .....+.+.
T Consensus 248 ~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~- 320 (377)
T cd03798 248 LEALAAELGLEDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITDG- 320 (377)
T ss_pred HHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcCC-
Confidence 2222 1 24678888999875 46777887 44 235567899999999999986543 344555533
Q ss_pred cceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 397 GVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 397 G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
+.|...+ .-+.+++.++|.+++++. .. +..++-...+. ..-+.+..++++.+.+.+
T Consensus 321 ~~g~~~~-----~~~~~~l~~~i~~~~~~~-~~-~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 321 ENGLLVP-----PGDPEALAEAILRLLADP-WL-RLGRAARRRVA----ERFSWENVAERLLELYRE 376 (377)
T ss_pred cceeEEC-----CCCHHHHHHHHHHHhcCc-HH-HHhHHHHHHHH----HHhhHHHHHHHHHHHHhh
Confidence 5677666 457999999999999987 53 22222222221 223345566666666543
No 55
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.14 E-value=1.6e-07 Score=91.20 Aligned_cols=314 Identities=14% Similarity=0.118 Sum_probs=163.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhh-hhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHH
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPL-LDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRV 85 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~-i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~ 85 (473)
||++++....|+...+..++++|.++||+|++++....... ... .++.+..++.... ... .+..+
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~---~~~~~--- 66 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEA-------LGVKVIPIPLDRR-GIN---PFKDL--- 66 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccccccc-------CCceEEecccccc-ccC---hHhHH---
Confidence 57877766789999999999999999999999998765432 121 2566666653211 011 11111
Q ss_pred HHHHhhHHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCCcccc
Q 042753 86 LRELHYPALLDWFKSHPSPPVAILSDFFLG--WTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVDALVS 163 (473)
Q Consensus 86 ~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 163 (473)
.....+.++++.. +||+|++..... .+...++..+.|.+...........
T Consensus 67 ---~~~~~~~~~~~~~--~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------------- 118 (359)
T cd03808 67 ---KALLRLYRLLRKE--RPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF----------------------- 118 (359)
T ss_pred ---HHHHHHHHHHHhc--CCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh-----------------------
Confidence 1123456677778 999999886544 2334445356665554333211000
Q ss_pred CCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhh-hccCCcEEeecchHHhhHHHHHHHHHhhC---CCcEEEeccC
Q 042753 164 FPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMM-ANKTSWGIVFNSFAELERVYIDHMKKEMG---HDRVWAVGPV 239 (473)
Q Consensus 164 ~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~le~~~~~~~~~~~~---~~~~~~vGpl 239 (473)
... ......+..... .....+.++..+-...+ .+..... ...+..++..
T Consensus 119 ---~~~-------------------~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~~~~~~~~~~ 171 (359)
T cd03808 119 ---TSG-------------------GLKRRLYLLLERLALRFTDKVIFQNEDDRD-----LALKLGIIKKKKTVLIPGSG 171 (359)
T ss_pred ---ccc-------------------hhHHHHHHHHHHHHHhhccEEEEcCHHHHH-----HHHHhcCCCcCceEEecCCC
Confidence 000 000111111111 22234555555532222 1111110 0123333322
Q ss_pred CCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCccc-CCHHHHHHHHHHHHh--CCCcEEEEEeCCCccC
Q 042753 240 LPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYV-LTAKQIHELAAALEK--TDVDFVYCVREPDERH 316 (473)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~ 316 (473)
.... . . ...... ...++.+++..|+... ...+.+-+.+..+.+ .+.++++.-....
T Consensus 172 ~~~~-~----~------~~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~--- 230 (359)
T cd03808 172 VDLD-R----F------SPSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDE--- 230 (359)
T ss_pred CChh-h----c------Cccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCc---
Confidence 2221 1 0 000000 1245678888888753 233444444444443 2344444333321
Q ss_pred CcccCCCCchh-hHHhhcCCCeEeecCccH-HHhhhccCccceeecc----CchhHHHHHhhCCeEecCcccccchhhHH
Q 042753 317 ASQDCGVLPDG-FEDRVAGRGYVIRGWSQQ-VAILRHKAVGAFLTHC----GWNSVLEGVSAGVVMLTWPMDADQYTNAQ 390 (473)
Q Consensus 317 ~~~~~~~lp~~-~~~~~~~~nv~v~~~~pq-~~lL~~~~v~~~ItHg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~ 390 (473)
. +..... ..+.....++...++..+ ..++..+++ +|.-+ -.+++.||+++|+|+|+.+.. ....
T Consensus 231 --~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~ 300 (359)
T cd03808 231 --E--NPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCRE 300 (359)
T ss_pred --c--hhhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----Cchh
Confidence 0 100000 111112456777676543 458888887 66443 267899999999999986543 3444
Q ss_pred HHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc
Q 042753 391 LLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 391 rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~ 426 (473)
.+.+. +.|...+ .-+.+++.++|.+++.|+
T Consensus 301 ~i~~~-~~g~~~~-----~~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 301 AVIDG-VNGFLVP-----PGDAEALADAIERLIEDP 330 (359)
T ss_pred hhhcC-cceEEEC-----CCCHHHHHHHHHHHHhCH
Confidence 55533 6787776 346899999999999887
No 56
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.12 E-value=9.8e-08 Score=95.95 Aligned_cols=104 Identities=21% Similarity=0.258 Sum_probs=68.5
Q ss_pred HHhhhccCccceee----ccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHH
Q 042753 346 VAILRHKAVGAFLT----HCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQ 421 (473)
Q Consensus 346 ~~lL~~~~v~~~It----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ 421 (473)
..+++.+++ +|+. -||..+++||+++|+|+|+.|...++......+.+. |+++... +.++|.++|.+
T Consensus 314 ~~~y~~aDi-~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~~-------d~~~La~~l~~ 384 (425)
T PRK05749 314 GLLYAIADI-AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQVE-------DAEDLAKAVTY 384 (425)
T ss_pred HHHHHhCCE-EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEEC-------CHHHHHHHHHH
Confidence 457788887 3442 244556999999999999999988888888877645 7776654 58999999999
Q ss_pred HhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042753 422 SVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRI 461 (473)
Q Consensus 422 ~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 461 (473)
+++|+ ..+++..+-+....+ +..|..++.++.+.+.+
T Consensus 385 ll~~~-~~~~~m~~~a~~~~~--~~~~~~~~~~~~l~~~l 421 (425)
T PRK05749 385 LLTDP-DARQAYGEAGVAFLK--QNQGALQRTLQLLEPYL 421 (425)
T ss_pred HhcCH-HHHHHHHHHHHHHHH--hCccHHHHHHHHHHHhc
Confidence 99987 444333222222211 12344455555554443
No 57
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.11 E-value=9.3e-09 Score=101.15 Aligned_cols=347 Identities=14% Similarity=0.119 Sum_probs=175.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCChhhhhhhccCCCCCCeeE-EEcCCCCCCCCCChhhHHHHHH
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTL-GLNVTVLITQNNLPLLDSLNANHPSTSLQS-LVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f-~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
||+++ .+++.|+.=+.++.++|.++ +.++.++.+......+..... . .++.. +.+.. .. . ... ...
T Consensus 2 ~i~~~-~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~-~--~~i~~~~~~~~---~~-~-~~~---~~~ 69 (365)
T TIGR00236 2 KVSIV-LGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLD-L--FHLPPDYDLNI---MS-P-GQT---LGE 69 (365)
T ss_pred eEEEE-EecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHH-h--cCCCCCeeeec---CC-C-CCC---HHH
Confidence 66654 45888999999999999987 566666666544333333211 0 11211 11111 01 1 111 112
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeCC--Cc-chHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCCcc
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSDF--FL-GWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVDAL 161 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D~--~~-~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 161 (473)
.+. .....+.+++++. +||+|++-. .. ..+..+|..+|||++.+.... . +.+
T Consensus 70 ~~~-~~~~~l~~~l~~~--~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~-~-------------------s~~-- 124 (365)
T TIGR00236 70 ITS-NMLEGLEELLLEE--KPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGL-R-------------------TGD-- 124 (365)
T ss_pred HHH-HHHHHHHHHHHHc--CCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCC-C-------------------cCC--
Confidence 222 3336778889999 999999853 32 256788999999987642110 0 000
Q ss_pred ccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEeccCC-
Q 042753 162 VSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAVGPVL- 240 (473)
Q Consensus 162 ~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~vGpl~- 240 (473)
. ...++ .. ..+ +..... ++.++..|- ....... ..-.+..+++.+|-..
T Consensus 125 ~-~~~~~-----------~~---------~~r---~~~~~~--ad~~~~~s~-~~~~~l~---~~G~~~~~I~vign~~~ 174 (365)
T TIGR00236 125 R-YSPMP-----------EE---------INR---QLTGHI--ADLHFAPTE-QAKDNLL---RENVKADSIFVTGNTVI 174 (365)
T ss_pred C-CCCCc-----------cH---------HHH---HHHHHH--HHhccCCCH-HHHHHHH---HcCCCcccEEEeCChHH
Confidence 0 00000 00 000 000000 111222221 1111111 1112203678888432
Q ss_pred CCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhC-----CCcEEEEEeCCCcc
Q 042753 241 PPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKT-----DVDFVYCVREPDER 315 (473)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~ 315 (473)
... . .... ......+.+.+.. ++++|+++.+-.... .+.+..+++++.+. +.++++....+.
T Consensus 175 d~~-~----~~~~---~~~~~~~~~~~~~--~~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~-- 241 (365)
T TIGR00236 175 DAL-L----TNVE---IAYSSPVLSEFGE--DKRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNP-- 241 (365)
T ss_pred HHH-H----HHHh---hccchhHHHhcCC--CCCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCCh--
Confidence 221 0 0000 0011222222322 345676665433222 13466677776542 455555544321
Q ss_pred CCcccCCCCchhhHHhhc-CCCeEeecCccH---HHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHH
Q 042753 316 HASQDCGVLPDGFEDRVA-GRGYVIRGWSQQ---VAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQL 391 (473)
Q Consensus 316 ~~~~~~~~lp~~~~~~~~-~~nv~v~~~~pq---~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~r 391 (473)
.+-..+.+... .+++.+.+.+++ ..++..+++ +|+.+|.. +.||+++|+|+|.++..++++. .
T Consensus 242 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e---~ 308 (365)
T TIGR00236 242 -------VVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE---T 308 (365)
T ss_pred -------HHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH---H
Confidence 11112222222 357777776665 456777886 89887654 7999999999999876555553 2
Q ss_pred HHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 042753 392 LVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIK 459 (473)
Q Consensus 392 v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~ 459 (473)
+. . |.|..+. .+.++|.+++.++++++ ..+++...-...+ .+|+++++.++.+.+
T Consensus 309 ~~-~-g~~~lv~------~d~~~i~~ai~~ll~~~-~~~~~~~~~~~~~----g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 309 VE-A-GTNKLVG------TDKENITKAAKRLLTDP-DEYKKMSNASNPY----GDGEASERIVEELLN 363 (365)
T ss_pred Hh-c-CceEEeC------CCHHHHHHHHHHHHhCh-HHHHHhhhcCCCC----cCchHHHHHHHHHHh
Confidence 22 4 7776554 36899999999999986 6665544333222 345555655555544
No 58
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.09 E-value=1.7e-07 Score=90.49 Aligned_cols=311 Identities=15% Similarity=0.129 Sum_probs=159.5
Q ss_pred EEEEEc-CC--CCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHH
Q 042753 7 HILVYP-FP--TSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFM 83 (473)
Q Consensus 7 ~Il~~~-~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~ 83 (473)
||+++. .. ..|...-+..++++|.++||+|++++........... ..++.+..++.... . ..
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~------~----~~ 65 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYEL-----DPKIKVIDLGDKRD------S----KL 65 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCcccc-----CCccceeecccccc------c----ch
Confidence 455444 22 3466666888999999999999999987553110010 12344443332110 0 00
Q ss_pred HHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCC-CcEEEecchHHHHHHHHhhhccCCCCCCCCCCCccc
Q 042753 84 RVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGL-PRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVDALV 162 (473)
Q Consensus 84 ~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~gi-P~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 162 (473)
.... .....+.++++.. +||+|++..........+...+. |++.........
T Consensus 66 ~~~~-~~~~~~~~~l~~~--~~d~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------------------ 118 (348)
T cd03820 66 LARF-KKLRRLRKLLKNN--KPDVVISFLTSLLTFLASLGLKIVKLIVSEHNSPDA------------------------ 118 (348)
T ss_pred hccc-cchHHHHHhhccc--CCCEEEEcCchHHHHHHHHhhccccEEEecCCCccc------------------------
Confidence 0001 2234566777778 99999998765333344444554 665532211100
Q ss_pred cCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEeccCCCC
Q 042753 163 SFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAVGPVLPP 242 (473)
Q Consensus 163 ~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~vGpl~~~ 242 (473)
... ...............+.++..+-... .......+ .++..+++-...
T Consensus 119 ----~~~---------------------~~~~~~~~~~~~~~~d~ii~~s~~~~-----~~~~~~~~-~~~~vi~~~~~~ 167 (348)
T cd03820 119 ----YKK---------------------RLRRLLLRRLLYRRADAVVVLTEEDR-----ALYYKKFN-KNVVVIPNPLPF 167 (348)
T ss_pred ----hhh---------------------hhHHHHHHHHHHhcCCEEEEeCHHHH-----HHhhccCC-CCeEEecCCcCh
Confidence 000 00000012223444555555553322 11111122 456666644433
Q ss_pred CCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCccc-CCHHHHHHHHHHHHhC--CCcEEEEEeCCCccCCcc
Q 042753 243 DDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYV-LTAKQIHELAAALEKT--DVDFVYCVREPDERHASQ 319 (473)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~ 319 (473)
. . ... . . ..++.+++..|+... ...+.+.+++..+.+. +.++++ ++...
T Consensus 168 ~-~-----------~~~-~------~--~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i-~G~~~------ 219 (348)
T cd03820 168 P-P-----------EEP-S------S--DLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRI-VGDGP------ 219 (348)
T ss_pred h-h-----------ccc-c------C--CCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEE-EeCCC------
Confidence 3 1 000 0 1 234456667777643 2334444445544432 334433 33321
Q ss_pred cCCCCchhhH---Hhhc-CCCeEeecCcc-HHHhhhccCccceeecc----CchhHHHHHhhCCeEecCcccccchhhHH
Q 042753 320 DCGVLPDGFE---DRVA-GRGYVIRGWSQ-QVAILRHKAVGAFLTHC----GWNSVLEGVSAGVVMLTWPMDADQYTNAQ 390 (473)
Q Consensus 320 ~~~~lp~~~~---~~~~-~~nv~v~~~~p-q~~lL~~~~v~~~ItHg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~ 390 (473)
....+. ++.. ..++...++.. -..++..+++ +|.-+ ..+++.||+++|+|+|+.+....+..
T Consensus 220 ----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~--- 290 (348)
T cd03820 220 ----EREALEALIKELGLEDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSE--- 290 (348)
T ss_pred ----CHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchHh---
Confidence 111121 1111 34566666633 3458888887 56543 25789999999999998765444332
Q ss_pred HHHHHhc-ceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHH
Q 042753 391 LLVDQLG-VGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARE 435 (473)
Q Consensus 391 rv~~~~G-~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~ 435 (473)
+... | .|...+ ..+.+++.++|.++++|+ +.+++..+
T Consensus 291 -~~~~-~~~g~~~~-----~~~~~~~~~~i~~ll~~~-~~~~~~~~ 328 (348)
T cd03820 291 -IIED-GVNGLLVP-----NGDVEALAEALLRLMEDE-ELRKRMGA 328 (348)
T ss_pred -hhcc-CcceEEeC-----CCCHHHHHHHHHHHHcCH-HHHHHHHH
Confidence 3324 4 787776 346899999999999997 55444433
No 59
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.09 E-value=3.8e-07 Score=91.21 Aligned_cols=123 Identities=15% Similarity=0.066 Sum_probs=70.9
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhh-HHH
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATR-LLK 81 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~-~~~ 81 (473)
|..+||.+++..-.|+-..+..+|+.|+++||+|++++.......-+... ..++.+..++.... ....... +..
T Consensus 1 ~~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~----~~~v~~~~~~~~~~-~~~~~~~~~~~ 75 (415)
T cd03816 1 PKRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILS----NPNITIHPLPPPPQ-RLNKLPFLLFA 75 (415)
T ss_pred CCccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhc----CCCEEEEECCCCcc-ccccchHHHHH
Confidence 44678888888778888889999999999999999999763221111010 13677777653210 0000011 111
Q ss_pred HHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-----hHHHHHHHhCCCcEEEec
Q 042753 82 FMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-----WTQGLAAELGLPRVVFSP 133 (473)
Q Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-----~~~~~A~~~giP~v~~~~ 133 (473)
+..... .....+..++... +||+|++..... .+..++...++|+|..+.
T Consensus 76 ~~~~~~-~~~~~~~~l~~~~--~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h 129 (415)
T cd03816 76 PLKVLW-QFFSLLWLLYKLR--PADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWH 129 (415)
T ss_pred HHHHHH-HHHHHHHHHHhcC--CCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcC
Confidence 111111 2223334456666 899999854221 233456667999887533
No 60
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.06 E-value=1.1e-06 Score=88.02 Aligned_cols=166 Identities=16% Similarity=0.119 Sum_probs=95.9
Q ss_pred CCcEEEEEeCCcccCCHHHHHHHHHHHHhC----CCcEEEEEeCCCccCCcccCCCCchhhHHh---hcCCCeEeecCcc
Q 042753 272 DESVVYVCFGSRYVLTAKQIHELAAALEKT----DVDFVYCVREPDERHASQDCGVLPDGFEDR---VAGRGYVIRGWSQ 344 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~---~~~~nv~v~~~~p 344 (473)
+++.+++..|+... ..-+..++++++.. +.+++ .++... ..+.+++. ...+|+.+.+|+|
T Consensus 227 ~~~~~i~~~G~l~~--~kg~~~li~a~~~l~~~~~~~l~-ivG~g~----------~~~~l~~~~~~~~l~~v~f~G~~~ 293 (412)
T PRK10307 227 DGKKIVLYSGNIGE--KQGLELVIDAARRLRDRPDLIFV-ICGQGG----------GKARLEKMAQCRGLPNVHFLPLQP 293 (412)
T ss_pred CCCEEEEEcCcccc--ccCHHHHHHHHHHhccCCCeEEE-EECCCh----------hHHHHHHHHHHcCCCceEEeCCCC
Confidence 34566667788753 23344455555432 23333 444421 12333322 2234788889998
Q ss_pred HHH---hhhccCccceeeccCc------hhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHH
Q 042753 345 QVA---ILRHKAVGAFLTHCGW------NSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDEL 415 (473)
Q Consensus 345 q~~---lL~~~~v~~~ItHgG~------~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l 415 (473)
+.+ +++.+++..+.+..+. +.+.|++++|+|+|+....+. .....+. +.|+.++ .-+.+++
T Consensus 294 ~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i~---~~G~~~~-----~~d~~~l 363 (412)
T PRK10307 294 YDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLVE---GIGVCVE-----PESVEAL 363 (412)
T ss_pred HHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHHh---CCcEEeC-----CCCHHHH
Confidence 754 6888887434344332 236899999999999864331 1122232 6787776 3468999
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 042753 416 ARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 416 ~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~ 464 (473)
.++|.++++|+ ..+++ +++..++.+.+.-+.+..++++++.+++.
T Consensus 364 a~~i~~l~~~~-~~~~~---~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 408 (412)
T PRK10307 364 VAAIAALARQA-LLRPK---LGTVAREYAERTLDKENVLRQFIADIRGL 408 (412)
T ss_pred HHHHHHHHhCH-HHHHH---HHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 99999999886 33322 22222222233355677788888777764
No 61
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.05 E-value=3.8e-07 Score=89.36 Aligned_cols=113 Identities=16% Similarity=0.125 Sum_probs=73.9
Q ss_pred CCeEeecCcc-HH---HhhhccCccceeec----cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCC
Q 042753 335 RGYVIRGWSQ-QV---AILRHKAVGAFLTH----CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGT 406 (473)
Q Consensus 335 ~nv~v~~~~p-q~---~lL~~~~v~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 406 (473)
.++...+|++ +. .+++.+++ +|.- |..+++.||+++|+|+|+... ......+.+. +.|..++
T Consensus 244 ~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~~~-~~g~~~~--- 313 (365)
T cd03825 244 FPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVDHG-VTGYLAK--- 313 (365)
T ss_pred CceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhheeCC-CceEEeC---
Confidence 5677789998 43 46888887 6664 346899999999999998643 2333344422 4676665
Q ss_pred CCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 407 RNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 407 ~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
..+.+++.+++.++++++ ...++ +++..++.....-|.+..++++++..++
T Consensus 314 --~~~~~~~~~~l~~l~~~~-~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 314 --PGDPEDLAEGIEWLLADP-DEREE---LGEAARELAENEFDSRVQAKRYLSLYEE 364 (365)
T ss_pred --CCCHHHHHHHHHHHHhCH-HHHHH---HHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 357899999999999886 43322 2222222223345667777777776653
No 62
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.04 E-value=1.2e-06 Score=87.23 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=59.1
Q ss_pred CCCeEeecCccHHH---hhhccCccceee---ccC-chhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCC
Q 042753 334 GRGYVIRGWSQQVA---ILRHKAVGAFLT---HCG-WNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGT 406 (473)
Q Consensus 334 ~~nv~v~~~~pq~~---lL~~~~v~~~It---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 406 (473)
.++|.+.+++|+.+ +|..+++ +|. +.| ..++.||+++|+|+|+.. .......+.+. ..|..++
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~~-~~G~lv~--- 349 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITDG-ENGLLVD--- 349 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhcccC-CceEEcC---
Confidence 46788889999765 5677887 543 223 348999999999999864 34455555522 4677665
Q ss_pred CCCCCHHHHHHHHHHHhCCc
Q 042753 407 RNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 407 ~~~~~~~~l~~~i~~~l~~~ 426 (473)
.-+.+++.++|.++++|+
T Consensus 350 --~~d~~~la~~i~~ll~~~ 367 (396)
T cd03818 350 --FFDPDALAAAVIELLDDP 367 (396)
T ss_pred --CCCHHHHHHHHHHHHhCH
Confidence 346999999999999986
No 63
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.04 E-value=4.5e-09 Score=103.35 Aligned_cols=137 Identities=13% Similarity=0.125 Sum_probs=87.9
Q ss_pred CCcEEEEEeCCcccC-CHHHHHHHHHHHHhCCC-cEEEEEeCCCccCCcccCCCCchhhHHh---hc--CCCeEeecCcc
Q 042753 272 DESVVYVCFGSRYVL-TAKQIHELAAALEKTDV-DFVYCVREPDERHASQDCGVLPDGFEDR---VA--GRGYVIRGWSQ 344 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~lp~~~~~~---~~--~~nv~v~~~~p 344 (473)
+++.|++++|..... ..+.+..+++++++... ++.++...+. ..-+.+.+. .. ..++.+.+..+
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~---------~~~~~l~~~~~~~~~~~~~v~~~~~~~ 267 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHP---------RTRPRIREAGLEFLGHHPNVLLISPLG 267 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCC---------ChHHHHHHHHHhhccCCCCEEEECCcC
Confidence 567888888887543 45667778888876532 3444444331 111222221 11 35777766655
Q ss_pred HH---HhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHH
Q 042753 345 QV---AILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQ 421 (473)
Q Consensus 345 q~---~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ 421 (473)
+. .++..+++ ||+.+| |.+.||++.|+|+|+++.. |. +.-+.+. |++..+. -+.++|.++|.+
T Consensus 268 ~~~~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~------~~~~~i~~~i~~ 333 (363)
T cd03786 268 YLYFLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVG------TDPEAILAAIEK 333 (363)
T ss_pred HHHHHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecC------CCHHHHHHHHHH
Confidence 43 45777886 999999 7788999999999998643 22 3334424 7665554 148999999999
Q ss_pred HhCCcHHHHHH
Q 042753 422 SVDGPRRERLK 432 (473)
Q Consensus 422 ~l~~~~~~~~~ 432 (473)
+++++ ...++
T Consensus 334 ll~~~-~~~~~ 343 (363)
T cd03786 334 LLSDE-FAYSL 343 (363)
T ss_pred HhcCc-hhhhc
Confidence 99986 44433
No 64
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.01 E-value=1.7e-07 Score=91.65 Aligned_cols=133 Identities=16% Similarity=0.110 Sum_probs=84.1
Q ss_pred CCcEEEEEeCCcccCCHHHHHHHHHHHHhCC-CcEEEEEeCCCccCCcccCCCCchhhHH---h-hcCCCeEeecCccHH
Q 042753 272 DESVVYVCFGSRYVLTAKQIHELAAALEKTD-VDFVYCVREPDERHASQDCGVLPDGFED---R-VAGRGYVIRGWSQQV 346 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~lp~~~~~---~-~~~~nv~v~~~~pq~ 346 (473)
.+..+++..|+... ......+++++++.. .++++.-.+. ..+.+.+ + -..+||.+.+|+|+.
T Consensus 189 ~~~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~g~-----------~~~~~~~~~~~~~~~~~V~~~g~v~~~ 255 (357)
T cd03795 189 AGRPFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGEGP-----------LEAELEALAAALGLLDRVRFLGRLDDE 255 (357)
T ss_pred CCCcEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeCCh-----------hHHHHHHHHHhcCCcceEEEcCCCCHH
Confidence 34567778888753 234555777777665 4444333221 1122222 1 124689999999975
Q ss_pred ---HhhhccCccceee---ccC-chhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHH
Q 042753 347 ---AILRHKAVGAFLT---HCG-WNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLL 419 (473)
Q Consensus 347 ---~lL~~~~v~~~It---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i 419 (473)
.++..+++.++.+ +.| ..++.||+++|+|+|+....+....... .. +.|...+ .-+.+++.++|
T Consensus 256 ~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~-----~~d~~~~~~~i 326 (357)
T cd03795 256 EKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVP-----PGDPAALAEAI 326 (357)
T ss_pred HHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeC-----CCCHHHHHHHH
Confidence 4777788732222 234 3479999999999999765554433322 13 6787776 34799999999
Q ss_pred HHHhCCc
Q 042753 420 AQSVDGP 426 (473)
Q Consensus 420 ~~~l~~~ 426 (473)
.++++|+
T Consensus 327 ~~l~~~~ 333 (357)
T cd03795 327 RRLLEDP 333 (357)
T ss_pred HHHHHCH
Confidence 9999987
No 65
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.99 E-value=5e-08 Score=93.62 Aligned_cols=161 Identities=14% Similarity=0.115 Sum_probs=97.5
Q ss_pred CcEEEEEeCCcccCCHHHHHHHHHHHHhCCCc-EEEEEeCCCccCCcccCCCCchhhHHhhcC-CCeEeecCccHHHhhh
Q 042753 273 ESVVYVCFGSRYVLTAKQIHELAAALEKTDVD-FVYCVREPDERHASQDCGVLPDGFEDRVAG-RGYVIRGWSQQVAILR 350 (473)
Q Consensus 273 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~-~nv~v~~~~pq~~lL~ 350 (473)
+++|.+--||..+--...+..++++.++...+ .++.+.... + . +.+.+.... ..+.+.+ .-.+++.
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~--------~-~-~~i~~~~~~~~~~~~~~--~~~~~m~ 234 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF--------K-G-KDLKEIYGDISEFEISY--DTHKALL 234 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC--------c-H-HHHHHHHhcCCCcEEec--cHHHHHH
Confidence 47899999998653334555455555432211 233333321 1 1 222222211 1222222 3456889
Q ss_pred ccCccceeeccCchhHHHHHhhCCeEecCcc--cccchhhHHHHHH--HhcceEEe-------------ccCCCCCCCHH
Q 042753 351 HKAVGAFLTHCGWNSVLEGVSAGVVMLTWPM--DADQYTNAQLLVD--QLGVGIRV-------------GEGTRNIPESD 413 (473)
Q Consensus 351 ~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~--~~DQ~~na~rv~~--~~G~G~~l-------------~~~~~~~~~~~ 413 (473)
.+++ .|+-+|..|+ |+...|+||++ ++ ..=|+.+|+++.+ +.|+.-.+ - +++.|++
T Consensus 235 ~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEll---Q~~~t~~ 307 (347)
T PRK14089 235 EAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELL---QEFVTVE 307 (347)
T ss_pred hhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhh---cccCCHH
Confidence 9997 9999999999 99999999988 44 4578889999872 11333222 3 5789999
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 042753 414 ELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIK 459 (473)
Q Consensus 414 ~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~ 459 (473)
.|.+++.+ ... +++++...++++.+ . +++++++++.+++
T Consensus 308 ~la~~i~~-~~~-~~~~~~~~~l~~~l----~-~~a~~~~A~~i~~ 346 (347)
T PRK14089 308 NLLKAYKE-MDR-EKFFKKSKELREYL----K-HGSAKNVAKILKE 346 (347)
T ss_pred HHHHHHHH-HHH-HHHHHHHHHHHHHh----c-CCHHHHHHHHHhc
Confidence 99999987 233 26666666666665 2 3556666655543
No 66
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.97 E-value=2.9e-06 Score=84.75 Aligned_cols=114 Identities=14% Similarity=0.112 Sum_probs=74.8
Q ss_pred CCCeEeecCccHH---HhhhccCccceee---c-cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCC
Q 042753 334 GRGYVIRGWSQQV---AILRHKAVGAFLT---H-CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGT 406 (473)
Q Consensus 334 ~~nv~v~~~~pq~---~lL~~~~v~~~It---H-gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 406 (473)
.+++.+.+++|+. ++|+.+++ +|. + |...+++||+++|+|+|+.... .....+.+. +.|...+
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~--- 351 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADG-ETGLLVD--- 351 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccC-CceEECC---
Confidence 3578888999864 47888987 553 2 3345899999999999986543 344455533 5677766
Q ss_pred CCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 042753 407 RNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 407 ~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~ 464 (473)
.-+.+++.++|.++++++ ..+++..+-+.... +.-+-+..++++++...+.
T Consensus 352 --~~d~~~la~~i~~~l~~~-~~~~~~~~~~~~~~----~~fsw~~~~~~~~~~y~~~ 402 (405)
T TIGR03449 352 --GHDPADWADALARLLDDP-RTRIRMGAAAVEHA----AGFSWAATADGLLSSYRDA 402 (405)
T ss_pred --CCCHHHHHHHHHHHHhCH-HHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHH
Confidence 347899999999999986 44433322222221 1245666677777766553
No 67
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.96 E-value=4.9e-07 Score=86.11 Aligned_cols=300 Identities=16% Similarity=0.176 Sum_probs=159.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC--hhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN--LPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFM 83 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~--~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~ 83 (473)
|||.+--. ..-|+.-+.++.++|.++||+|.+.+-... .+.++.. ++++..+... + ......+.
T Consensus 1 MkIwiDi~-~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~y-------g~~y~~iG~~---g---~~~~~Kl~ 66 (335)
T PF04007_consen 1 MKIWIDIT-HPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLY-------GIDYIVIGKH---G---DSLYGKLL 66 (335)
T ss_pred CeEEEECC-CchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHc-------CCCeEEEcCC---C---CCHHHHHH
Confidence 45654332 223999999999999999999999987643 3344444 6888777531 1 11112222
Q ss_pred HHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCCcccc
Q 042753 84 RVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVDALVS 163 (473)
Q Consensus 84 ~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 163 (473)
... ...-.+.+++++. +||++|+- ....+..+|.-+|||+|.+.-....... + -..
T Consensus 67 ~~~--~R~~~l~~~~~~~--~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~---~----------------~Lt 122 (335)
T PF04007_consen 67 ESI--ERQYKLLKLIKKF--KPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQ---N----------------RLT 122 (335)
T ss_pred HHH--HHHHHHHHHHHhh--CCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhcc---c----------------eee
Confidence 222 2234566777788 99999975 3367788999999999998655322100 0 000
Q ss_pred CCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEe-ecchHHhhHHHHHHHHHhhCCCcEEEeccCCCC
Q 042753 164 FPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIV-FNSFAELERVYIDHMKKEMGHDRVWAVGPVLPP 242 (473)
Q Consensus 164 ~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~le~~~~~~~~~~~~~~~~~~vGpl~~~ 242 (473)
+| +.+. -..|..+ -...+.+.... ..+. .+.+. ...++=|+.
T Consensus 123 ~P-la~~-----i~~P~~~--------~~~~~~~~G~~----~~i~~y~G~~-----------------E~ayl~~F~-- 165 (335)
T PF04007_consen 123 LP-LADV-----IITPEAI--------PKEFLKRFGAK----NQIRTYNGYK-----------------ELAYLHPFK-- 165 (335)
T ss_pred hh-cCCe-----eECCccc--------CHHHHHhcCCc----CCEEEECCee-----------------eEEeecCCC--
Confidence 11 0000 0000000 00001111000 0011 12221 112222211
Q ss_pred CCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCccc----CCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCc
Q 042753 243 DDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYV----LTAKQIHELAAALEKTDVDFVYCVREPDERHAS 318 (473)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~----~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 318 (473)
.+++..+-++. .+++.|++=+-+..+ .....+..+++.|++.+..++...+...
T Consensus 166 ----------------Pd~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~----- 223 (335)
T PF04007_consen 166 ----------------PDPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYED----- 223 (335)
T ss_pred ----------------CChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcc-----
Confidence 22334444543 356788877766422 2345577789999988877444443321
Q ss_pred ccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcc
Q 042753 319 QDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGV 398 (473)
Q Consensus 319 ~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~ 398 (473)
.++ ..++. +-.+...-+.-.++|.++++ +|+-|| ....||...|+|.|.+ +.++-...-+.+.++ |+
T Consensus 224 -----~~~-~~~~~--~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl 290 (335)
T PF04007_consen 224 -----QRE-LFEKY--GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL 290 (335)
T ss_pred -----hhh-HHhcc--CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC
Confidence 111 11111 11222355566689999997 888777 7889999999999975 222322333455545 65
Q ss_pred eEEeccCCCCCCCHHHHHHHHHHH
Q 042753 399 GIRVGEGTRNIPESDELARLLAQS 422 (473)
Q Consensus 399 G~~l~~~~~~~~~~~~l~~~i~~~ 422 (473)
-.+ ..+.+++.+.+.+.
T Consensus 291 l~~-------~~~~~ei~~~v~~~ 307 (335)
T PF04007_consen 291 LYH-------STDPDEIVEYVRKN 307 (335)
T ss_pred eEe-------cCCHHHHHHHHHHh
Confidence 322 34677776655443
No 68
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.95 E-value=4.9e-06 Score=81.33 Aligned_cols=109 Identities=13% Similarity=0.160 Sum_probs=68.5
Q ss_pred CCCeEeec-CccHH---HhhhccCccceee----c--cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEec
Q 042753 334 GRGYVIRG-WSQQV---AILRHKAVGAFLT----H--CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVG 403 (473)
Q Consensus 334 ~~nv~v~~-~~pq~---~lL~~~~v~~~It----H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~ 403 (473)
.+++.... |+|+. .++..+++ +|. . |..+++.||+++|+|+|+.+..+ ...+... +.|...+
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc
Confidence 45666654 58864 47777887 552 2 34568999999999999987654 2333324 6777776
Q ss_pred cCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 042753 404 EGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKR 460 (473)
Q Consensus 404 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~ 460 (473)
.-+.+++.++|.++++++ ..+++. ++..++..+. -+.+..++++.+.
T Consensus 318 -----~~d~~~~~~~l~~l~~~~-~~~~~~---~~~~~~~~~~-~s~~~~~~~~~~~ 364 (366)
T cd03822 318 -----PGDPAALAEAIRRLLADP-ELAQAL---RARAREYARA-MSWERVAERYLRL 364 (366)
T ss_pred -----CCCHHHHHHHHHHHHcCh-HHHHHH---HHHHHHHHhh-CCHHHHHHHHHHH
Confidence 235899999999999985 333322 2222222123 4556666666554
No 69
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.93 E-value=4.8e-06 Score=81.35 Aligned_cols=79 Identities=20% Similarity=0.188 Sum_probs=58.2
Q ss_pred CCCeEeecCccHHH---hhhccCccceeec----cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCC
Q 042753 334 GRGYVIRGWSQQVA---ILRHKAVGAFLTH----CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGT 406 (473)
Q Consensus 334 ~~nv~v~~~~pq~~---lL~~~~v~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 406 (473)
.+++.+.+|+++.+ ++..+++ +|.- |-.+++.||+++|+|+|+.+. ......+. . +.|....
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~~-~-~~~~~~~--- 329 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELIE-Y-GCGWVVD--- 329 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHhh-c-CceEEeC---
Confidence 46788889999654 5788887 4432 225689999999999999653 34455555 4 7787766
Q ss_pred CCCCCHHHHHHHHHHHhCCc
Q 042753 407 RNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 407 ~~~~~~~~l~~~i~~~l~~~ 426 (473)
. +.+++.++|.++++++
T Consensus 330 ~---~~~~~~~~i~~l~~~~ 346 (375)
T cd03821 330 D---DVDALAAALRRALELP 346 (375)
T ss_pred C---ChHHHHHHHHHHHhCH
Confidence 2 3499999999999986
No 70
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.86 E-value=9.2e-06 Score=79.01 Aligned_cols=108 Identities=18% Similarity=0.171 Sum_probs=67.5
Q ss_pred CCeEeecCcc-HHHhhhccCccceeeccC----chhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCC
Q 042753 335 RGYVIRGWSQ-QVAILRHKAVGAFLTHCG----WNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNI 409 (473)
Q Consensus 335 ~nv~v~~~~p-q~~lL~~~~v~~~ItHgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 409 (473)
.++....... ..+++..+++ +|..+. .+++.||+++|+|+|+.. ...+...+.+ .|..++ .
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~---~g~~~~-----~ 316 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELVGD---TGFLVP-----P 316 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHhhc---CCEEeC-----C
Confidence 4555555443 3568888887 665443 479999999999999854 3445555552 465565 2
Q ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 042753 410 PESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKR 460 (473)
Q Consensus 410 ~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~ 460 (473)
-+.+++.++|.+++++++.+++..+...+.+ .+.-|-+..++++++.
T Consensus 317 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~----~~~~s~~~~~~~~~~~ 363 (365)
T cd03807 317 GDPEALAEAIEALLADPALRQALGEAARERI----EENFSIEAMVEAYEEL 363 (365)
T ss_pred CCHHHHHHHHHHHHhChHHHHHHHHHHHHHH----HHhCCHHHHHHHHHHH
Confidence 3689999999999998623333233333333 3334556666666553
No 71
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.86 E-value=5e-06 Score=81.11 Aligned_cols=135 Identities=16% Similarity=0.172 Sum_probs=81.0
Q ss_pred CCcEEEEEeCCccc-CCHHHHHHHHHHHHhC--CCcEEEEEeCCCccCCcccCCCCchhhHHhh-cCCCeEeecCccHHH
Q 042753 272 DESVVYVCFGSRYV-LTAKQIHELAAALEKT--DVDFVYCVREPDERHASQDCGVLPDGFEDRV-AGRGYVIRGWSQQVA 347 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~pq~~ 347 (473)
.++++++.+|+... ...+.+.+.+..+.+. +.++++.-.... .+.+- .+.++. ..+|+.+.+++|+.+
T Consensus 177 ~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~-------~~~~~-~~~~~~~~~~~v~~~g~~~~~~ 248 (355)
T cd03799 177 GEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPL-------RDELE-ALIAELGLEDRVTLLGAKSQEE 248 (355)
T ss_pred CCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCcc-------HHHHH-HHHHHcCCCCeEEECCcCChHH
Confidence 45567777888643 2334444444444443 334333322211 01111 111111 246788899998654
Q ss_pred ---hhhccCccceee----------ccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHH
Q 042753 348 ---ILRHKAVGAFLT----------HCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDE 414 (473)
Q Consensus 348 ---lL~~~~v~~~It----------HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~ 414 (473)
++..+++ +|. -|..+++.||+++|+|+|+.+.. .....+. .-..|...+ .-+.++
T Consensus 249 l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~-~~~~g~~~~-----~~~~~~ 316 (355)
T cd03799 249 VRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVE-DGETGLLVP-----PGDPEA 316 (355)
T ss_pred HHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----Ccchhhh-CCCceEEeC-----CCCHHH
Confidence 6677887 554 34457899999999999987543 2333444 414787776 347899
Q ss_pred HHHHHHHHhCCc
Q 042753 415 LARLLAQSVDGP 426 (473)
Q Consensus 415 l~~~i~~~l~~~ 426 (473)
+.++|.++++++
T Consensus 317 l~~~i~~~~~~~ 328 (355)
T cd03799 317 LADAIERLLDDP 328 (355)
T ss_pred HHHHHHHHHhCH
Confidence 999999999987
No 72
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.85 E-value=5.1e-06 Score=82.76 Aligned_cols=166 Identities=13% Similarity=0.128 Sum_probs=93.6
Q ss_pred CCcEEEEEeCCccc-CCHHHHHHHHHHHHhC--CCcEEEEEeCCCccCCcccCCCCchhhH---Hhhc-CCCeEeecCcc
Q 042753 272 DESVVYVCFGSRYV-LTAKQIHELAAALEKT--DVDFVYCVREPDERHASQDCGVLPDGFE---DRVA-GRGYVIRGWSQ 344 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~lp~~~~---~~~~-~~nv~v~~~~p 344 (473)
+++.+++..|.... ...+.+.+.+..+.+. +.++++ ++... ..+.+. ++.. .+++...+|+|
T Consensus 191 ~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i-~G~g~----------~~~~l~~~~~~~~l~~~v~~~G~~~ 259 (398)
T cd03796 191 NDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFII-GGDGP----------KRILLEEMREKYNLQDRVELLGAVP 259 (398)
T ss_pred CCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEE-EeCCc----------hHHHHHHHHHHhCCCCeEEEeCCCC
Confidence 35577888887753 2334444444444332 334333 33321 112222 2222 34588889998
Q ss_pred HHH---hhhccCccceee---ccCc-hhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHH
Q 042753 345 QVA---ILRHKAVGAFLT---HCGW-NSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELAR 417 (473)
Q Consensus 345 q~~---lL~~~~v~~~It---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ 417 (473)
+.+ +++.+++ +|. +-|. .++.||+++|+|+|+.+..+ ....+. . |.+.... .+.+++.+
T Consensus 260 ~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~-~-~~~~~~~------~~~~~l~~ 325 (398)
T cd03796 260 HERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLP-P-DMILLAE------PDVESIVR 325 (398)
T ss_pred HHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhee-C-CceeecC------CCHHHHHH
Confidence 644 7778887 553 2244 49999999999999976642 233443 3 4443332 26899999
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcc
Q 042753 418 LLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINELKS 466 (473)
Q Consensus 418 ~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~ 466 (473)
++.+++++. .-.. .+....++.+.+.-|-+..++++++...+..+
T Consensus 326 ~l~~~l~~~-~~~~---~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~~ 370 (398)
T cd03796 326 KLEEAISIL-RTGK---HDPWSFHNRVKKMYSWEDVAKRTEKVYDRILQ 370 (398)
T ss_pred HHHHHHhCh-hhhh---hHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhc
Confidence 999999864 2111 11122222224456677777777777766543
No 73
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.84 E-value=1.2e-05 Score=79.81 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=57.6
Q ss_pred CCCeEeecCccHH---HhhhccCccceeec----cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCC
Q 042753 334 GRGYVIRGWSQQV---AILRHKAVGAFLTH----CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGT 406 (473)
Q Consensus 334 ~~nv~v~~~~pq~---~lL~~~~v~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 406 (473)
.+++.+.+++|+. .+|..+++ ++.. |-..++.||+++|+|+|+.-.. .....+.+. +.|...+
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~~-~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVDG-ETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhccC-CceEEeC---
Confidence 3678889999976 46788887 5532 2235789999999999987443 233445533 5676654
Q ss_pred CCCCCHHHHHHHHHHHhCCc
Q 042753 407 RNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 407 ~~~~~~~~l~~~i~~~l~~~ 426 (473)
.+.+++.++|.++++++
T Consensus 349 ---~~~~~~a~~i~~l~~~~ 365 (392)
T cd03805 349 ---PTPEEFAEAMLKLANDP 365 (392)
T ss_pred ---CCHHHHHHHHHHHHhCh
Confidence 26899999999999987
No 74
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.81 E-value=5.7e-06 Score=79.11 Aligned_cols=309 Identities=16% Similarity=0.129 Sum_probs=179.5
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEe-CCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHH
Q 042753 9 LVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLI-TQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRV 85 (473)
Q Consensus 9 l~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~-~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~ 85 (473)
+.+-.-+.|-++-.++|.++|.++ ++.|++.+ |+.-.+.+++... +.+...-+|++
T Consensus 52 vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~----~~v~h~YlP~D----------------- 110 (419)
T COG1519 52 VWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFG----DSVIHQYLPLD----------------- 110 (419)
T ss_pred EEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcC----CCeEEEecCcC-----------------
Confidence 334444779999999999999998 89999888 4544555554421 22333334531
Q ss_pred HHHHhhHHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCCcccc
Q 042753 86 LRELHYPALLDWFKSHPSPPVAILSDFFLG--WTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVDALVS 163 (473)
Q Consensus 86 ~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 163 (473)
....+.+++..+ +||++|.-.... ....-+++.|||.+.+..-.. ..
T Consensus 111 ----~~~~v~rFl~~~--~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS--------------------~r----- 159 (419)
T COG1519 111 ----LPIAVRRFLRKW--RPKLLIIMETELWPNLINELKRRGIPLVLVNARLS--------------------DR----- 159 (419)
T ss_pred ----chHHHHHHHHhc--CCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeec--------------------hh-----
Confidence 113456778888 999887554434 445777889999998632210 00
Q ss_pred CCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhh-hccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEeccCCCC
Q 042753 164 FPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMM-ANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAVGPVLPP 242 (473)
Q Consensus 164 ~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~vGpl~~~ 242 (473)
....+..+....+ .+.+-..++..|-.+-+ -+. .++-+.+...|-+=..
T Consensus 160 ------------------------S~~~y~k~~~~~~~~~~~i~li~aQse~D~~--Rf~----~LGa~~v~v~GNlKfd 209 (419)
T COG1519 160 ------------------------SFARYAKLKFLARLLFKNIDLILAQSEEDAQ--RFR----SLGAKPVVVTGNLKFD 209 (419)
T ss_pred ------------------------hhHHHHHHHHHHHHHHHhcceeeecCHHHHH--HHH----hcCCcceEEecceeec
Confidence 0001111222222 22233444444422222 111 2332567888866433
Q ss_pred CCcchhhccCCCCCCCCh---hhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhC--CCcEEEEEeCCCccCC
Q 042753 243 DDDLVESMCRGGSSSVPA---HDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKT--DVDFVYCVREPDERHA 317 (473)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~ 317 (473)
..+ ..... ..+...++. + ..+.|..+|. ....+..-+...+|.+. +..+||+-+.+
T Consensus 210 ~~~----------~~~~~~~~~~~r~~l~~--~-r~v~iaaSTH-~GEeei~l~~~~~l~~~~~~~llIlVPRHp----- 270 (419)
T COG1519 210 IEP----------PPQLAAELAALRRQLGG--H-RPVWVAASTH-EGEEEIILDAHQALKKQFPNLLLILVPRHP----- 270 (419)
T ss_pred CCC----------ChhhHHHHHHHHHhcCC--C-CceEEEecCC-CchHHHHHHHHHHHHhhCCCceEEEecCCh-----
Confidence 301 01111 234444443 2 3466666663 33455566677777654 46777777665
Q ss_pred cccCCCCchhhHHhhcCC-----------------CeEeecCccH-HHhhhccCc---cc-eeeccCchhHHHHHhhCCe
Q 042753 318 SQDCGVLPDGFEDRVAGR-----------------GYVIRGWSQQ-VAILRHKAV---GA-FLTHCGWNSVLEGVSAGVV 375 (473)
Q Consensus 318 ~~~~~~lp~~~~~~~~~~-----------------nv~v~~~~pq-~~lL~~~~v---~~-~ItHgG~~s~~eal~~GvP 375 (473)
|.+++ +.+..... +|++.+-+-- ..++.-+++ |+ ++-+||.| .+|++++|+|
T Consensus 271 ----ERf~~-v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~p 344 (419)
T COG1519 271 ----ERFKA-VENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTP 344 (419)
T ss_pred ----hhHHH-HHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCC
Confidence 33321 11111222 3444344332 223344443 11 34588887 7899999999
Q ss_pred EecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHH
Q 042753 376 MLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKA 433 (473)
Q Consensus 376 ~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a 433 (473)
+|.-|+..-|.+.++++.+. |.|+.++ +.+.|.++++.+++|+ ..+++.
T Consensus 345 vi~Gp~~~Nf~ei~~~l~~~-ga~~~v~-------~~~~l~~~v~~l~~~~-~~r~~~ 393 (419)
T COG1519 345 VIFGPYTFNFSDIAERLLQA-GAGLQVE-------DADLLAKAVELLLADE-DKREAY 393 (419)
T ss_pred EEeCCccccHHHHHHHHHhc-CCeEEEC-------CHHHHHHHHHHhcCCH-HHHHHH
Confidence 99999999999999999977 9999998 2888999999998886 444443
No 75
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.81 E-value=1.7e-05 Score=77.34 Aligned_cols=300 Identities=15% Similarity=0.078 Sum_probs=153.7
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEeCCCChh-hhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhHH
Q 042753 15 TSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP-LLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPA 93 (473)
Q Consensus 15 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (473)
..|--.-...|+++|.++||+|++++...... .+.. .++++..++.... ..+. .. .....
T Consensus 9 ~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~------~~~~-~~-----~~~~~ 69 (355)
T cd03819 9 SGGVERGTLELARALVERGHRSLVASAGGRLVAELEA-------EGSRHIKLPFISK------NPLR-IL-----LNVAR 69 (355)
T ss_pred cCcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHHh-------cCCeEEEcccccc------chhh-hH-----HHHHH
Confidence 35666778999999999999999998754322 2222 2466655543210 0000 11 11234
Q ss_pred HHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCCccccCCCCCCCC
Q 042753 94 LLDWFKSHPSPPVAILSDFFLG--WTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVDALVSFPRVPNCP 171 (473)
Q Consensus 94 l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~l~~~~ 171 (473)
+.+++++. +||+|++..... .+..+++..++|++..........
T Consensus 70 l~~~~~~~--~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------------------------------- 115 (355)
T cd03819 70 LRRLIREE--KVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGFYSVN-------------------------------- 115 (355)
T ss_pred HHHHHHHc--CCCEEEECCCchhHHHHHHHHhcCCCEEEEeCCchhhH--------------------------------
Confidence 56677788 999999876433 344567788999887533211100
Q ss_pred CCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhh--CCCcEEEeccCCCCCCcchhh
Q 042753 172 VYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEM--GHDRVWAVGPVLPPDDDLVES 249 (473)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~--~~~~~~~vGpl~~~~~~~~~~ 249 (473)
. .. .....+...++..+-...+ .+...+ +..++..++.-+... .
T Consensus 116 -~--------------------~~---~~~~~~~~~vi~~s~~~~~-----~~~~~~~~~~~k~~~i~ngi~~~-~---- 161 (355)
T cd03819 116 -F--------------------RY---NAIMARGDRVIAVSNFIAD-----HIRENYGVDPDRIRVIPRGVDLD-R---- 161 (355)
T ss_pred -H--------------------HH---HHHHHhcCEEEEeCHHHHH-----HHHHhcCCChhhEEEecCCcccc-c----
Confidence 0 00 0111234444444321111 111111 102455554322221 1
Q ss_pred ccCCCCCCCChhh---hHHHhcCCCCCcEEEEEeCCccc-CCHHHHHHHHHHHHhC--CCcEEEEEeCCCccCCcccCCC
Q 042753 250 MCRGGSSSVPAHD---VLTWLDSRRDESVVYVCFGSRYV-LTAKQIHELAAALEKT--DVDFVYCVREPDERHASQDCGV 323 (473)
Q Consensus 250 ~~~~~~~~~~~~~---~~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~ 323 (473)
.... ...... +.+-+.. ..+..+++..|+... ...+.+.+.+..+.+. +.++ +.++... . .+.
T Consensus 162 ~~~~---~~~~~~~~~~~~~~~~-~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l-~ivG~~~----~--~~~ 230 (355)
T cd03819 162 FDPG---AVPPERILALAREWPL-PKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHL-LIVGDAQ----G--RRF 230 (355)
T ss_pred cCcc---ccchHHHHHHHHHcCC-CCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEE-EEEECCc----c--cch
Confidence 0000 001111 1111111 245567777787653 3445555556656553 3333 3344321 0 011
Q ss_pred CchhhH---Hhhc-CCCeEeecCccH-HHhhhccCccceeec----cC-chhHHHHHhhCCeEecCcccccchhhHHHHH
Q 042753 324 LPDGFE---DRVA-GRGYVIRGWSQQ-VAILRHKAVGAFLTH----CG-WNSVLEGVSAGVVMLTWPMDADQYTNAQLLV 393 (473)
Q Consensus 324 lp~~~~---~~~~-~~nv~v~~~~pq-~~lL~~~~v~~~ItH----gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~ 393 (473)
+.+.+. ++.. .+++.+.+|.++ ..+|..+++ +|.= -| .++++||+++|+|+|+... ......+.
T Consensus 231 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~ 304 (355)
T cd03819 231 YYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVR 304 (355)
T ss_pred HHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHh
Confidence 111111 1112 356888888543 457888887 4432 23 4599999999999998643 23444554
Q ss_pred HHhcceEEeccCCCCCCCHHHHHHHHHHHhC
Q 042753 394 DQLGVGIRVGEGTRNIPESDELARLLAQSVD 424 (473)
Q Consensus 394 ~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~ 424 (473)
+. +.|..++ .-+.+++.++|..++.
T Consensus 305 ~~-~~g~~~~-----~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 305 PG-ETGLLVP-----PGDAEALAQALDQILS 329 (355)
T ss_pred CC-CceEEeC-----CCCHHHHHHHHHHHHh
Confidence 22 4787776 3588999999976664
No 76
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.80 E-value=5.8e-06 Score=81.20 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=60.9
Q ss_pred CCCeEeecCccHHH---hhhccCccceeec----------cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceE
Q 042753 334 GRGYVIRGWSQQVA---ILRHKAVGAFLTH----------CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGI 400 (473)
Q Consensus 334 ~~nv~v~~~~pq~~---lL~~~~v~~~ItH----------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~ 400 (473)
..++.+.+++|+.+ ++..+++ +|.- |-.+++.||+++|+|+|+-+.. .+...+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 35788889998754 5788887 5532 3357899999999999987654 355556534 6787
Q ss_pred EeccCCCCCCCHHHHHHHHHHHhCCc
Q 042753 401 RVGEGTRNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 401 ~l~~~~~~~~~~~~l~~~i~~~l~~~ 426 (473)
.++ .-+.+++.++|.++++|+
T Consensus 317 ~~~-----~~d~~~l~~~i~~l~~~~ 337 (367)
T cd05844 317 LVP-----EGDVAALAAALGRLLADP 337 (367)
T ss_pred EEC-----CCCHHHHHHHHHHHHcCH
Confidence 776 347899999999999986
No 77
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.79 E-value=3.1e-06 Score=83.07 Aligned_cols=132 Identities=16% Similarity=0.196 Sum_probs=79.7
Q ss_pred CcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcE-EEEEeCCCccCCcccCCCCchhhHHhh----cCCCeEeecCccH--
Q 042753 273 ESVVYVCFGSRYVLTAKQIHELAAALEKTDVDF-VYCVREPDERHASQDCGVLPDGFEDRV----AGRGYVIRGWSQQ-- 345 (473)
Q Consensus 273 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~lp~~~~~~~----~~~nv~v~~~~pq-- 345 (473)
++.+++..|.........+..+++++.+....+ ++.++... .-+.+++.. .+.++...+|+++
T Consensus 179 ~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~----------~~~~l~~~~~~~~l~~~v~f~G~~~~~~ 248 (359)
T PRK09922 179 KPAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS----------DFEKCKAYSRELGIEQRIIWHGWQSQPW 248 (359)
T ss_pred CCcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc----------cHHHHHHHHHHcCCCCeEEEecccCCcH
Confidence 345667778764323344566777776643232 33444321 112222221 2457888888754
Q ss_pred HH---hhhccCccceeec----cCchhHHHHHhhCCeEecCc-ccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHH
Q 042753 346 VA---ILRHKAVGAFLTH----CGWNSVLEGVSAGVVMLTWP-MDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELAR 417 (473)
Q Consensus 346 ~~---lL~~~~v~~~ItH----gG~~s~~eal~~GvP~l~~P-~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ 417 (473)
.. .+..+++ +|.. |-..++.||+++|+|+|+.- ..+ ....+. .-..|..++ .-+.+++.+
T Consensus 249 ~~~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~-~~~~G~lv~-----~~d~~~la~ 316 (359)
T PRK09922 249 EVVQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIK-PGLNGELYT-----PGNIDEFVG 316 (359)
T ss_pred HHHHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHcc-CCCceEEEC-----CCCHHHHHH
Confidence 22 3445665 5543 33679999999999999875 322 223444 314677776 358999999
Q ss_pred HHHHHhCCc
Q 042753 418 LLAQSVDGP 426 (473)
Q Consensus 418 ~i~~~l~~~ 426 (473)
+|.++++|+
T Consensus 317 ~i~~l~~~~ 325 (359)
T PRK09922 317 KLNKVISGE 325 (359)
T ss_pred HHHHHHhCc
Confidence 999999987
No 78
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.79 E-value=2.4e-05 Score=78.97 Aligned_cols=111 Identities=12% Similarity=0.197 Sum_probs=70.2
Q ss_pred CCeEeecCccHHHh---hhcc----Cccceeecc---C-chhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEec
Q 042753 335 RGYVIRGWSQQVAI---LRHK----AVGAFLTHC---G-WNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVG 403 (473)
Q Consensus 335 ~nv~v~~~~pq~~l---L~~~----~v~~~ItHg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~ 403 (473)
.++...+++++.++ +..+ ++ ||..+ | ..+++||+++|+|+|+.... .....+.+. ..|..++
T Consensus 317 ~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~~-~~G~lv~ 389 (439)
T TIGR02472 317 GKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIANC-RNGLLVD 389 (439)
T ss_pred ceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcCC-CcEEEeC
Confidence 45777777777654 5544 55 76543 3 45999999999999987543 344445422 4687776
Q ss_pred cCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042753 404 EGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRI 461 (473)
Q Consensus 404 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 461 (473)
.-+.+++.++|.++++|+ ..+ +++++..++.+...-|-+..++++++.+
T Consensus 390 -----~~d~~~la~~i~~ll~~~-~~~---~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 390 -----VLDLEAIASALEDALSDS-SQW---QLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred -----CCCHHHHHHHHHHHHhCH-HHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 347899999999999986 433 3333333332233445555666655543
No 79
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.71 E-value=9.9e-06 Score=78.20 Aligned_cols=135 Identities=17% Similarity=0.167 Sum_probs=77.1
Q ss_pred CCcEEEEEeCCccc-CCHHHHHHHHHHHHhC--CCcEEEEEeCCCccCCcccCCCCchhhHHhhc-CCCeEeecCccH-H
Q 042753 272 DESVVYVCFGSRYV-LTAKQIHELAAALEKT--DVDFVYCVREPDERHASQDCGVLPDGFEDRVA-GRGYVIRGWSQQ-V 346 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~pq-~ 346 (473)
.++.+++..|+... ...+.+-..+..+.+. +.++++. +... ..+.+- ...++.. ..++...++.++ .
T Consensus 187 ~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~-G~~~------~~~~~~-~~~~~~~~~~~v~~~g~~~~~~ 258 (353)
T cd03811 187 PDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVIL-GDGP------LREELE-ALAKELGLADRVHFLGFQSNPY 258 (353)
T ss_pred CCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEE-cCCc------cHHHHH-HHHHhcCCCccEEEecccCCHH
Confidence 45678888888753 2223333333333332 3444443 3321 001011 1111222 356777788765 4
Q ss_pred HhhhccCccceeec----cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHH---HHHH
Q 042753 347 AILRHKAVGAFLTH----CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDEL---ARLL 419 (473)
Q Consensus 347 ~lL~~~~v~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l---~~~i 419 (473)
+++..+++ +|.- |..+++.||+++|+|+|+.... .....+.+. +.|...+ .-+.+.+ .+++
T Consensus 259 ~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~-----~~~~~~~~~~~~~i 326 (353)
T cd03811 259 PYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVP-----VGDEAALAAAALAL 326 (353)
T ss_pred HHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEEC-----CCCHHHHHHHHHHH
Confidence 58888887 5532 3456899999999999986443 555666644 6788776 3466666 5666
Q ss_pred HHHhCCc
Q 042753 420 AQSVDGP 426 (473)
Q Consensus 420 ~~~l~~~ 426 (473)
..++.++
T Consensus 327 ~~~~~~~ 333 (353)
T cd03811 327 LDLLLDP 333 (353)
T ss_pred HhccCCh
Confidence 6666665
No 80
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.71 E-value=1.4e-05 Score=78.13 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=69.0
Q ss_pred CCCeEeecCccH-HHhhhccCccceeecc----CchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCC
Q 042753 334 GRGYVIRGWSQQ-VAILRHKAVGAFLTHC----GWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRN 408 (473)
Q Consensus 334 ~~nv~v~~~~pq-~~lL~~~~v~~~ItHg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 408 (473)
.+++...++..+ .+++..+++ +|.-. ..+++.||+++|+|+|+. |...+...+.+ .|..+.
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~---~g~~~~----- 309 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD---SGLIVP----- 309 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC---CceEeC-----
Confidence 356777777654 568888887 55433 257899999999999974 44555555552 344444
Q ss_pred CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042753 409 IPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRI 461 (473)
Q Consensus 409 ~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 461 (473)
.-+.+++.++|.+++++++.+++...+-++.+ .+.-+-+..++++.+..
T Consensus 310 ~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~----~~~~s~~~~~~~~~~~y 358 (360)
T cd04951 310 ISDPEALANKIDEILKMSGEERDIIGARRERI----VKKFSINSIVQQWLTLY 358 (360)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----HHhcCHHHHHHHHHHHh
Confidence 34788999999999954325554443333333 23344555555555543
No 81
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.65 E-value=4.8e-05 Score=77.03 Aligned_cols=195 Identities=16% Similarity=0.138 Sum_probs=104.1
Q ss_pred CcEEEec-cCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHH--h--CCCcE
Q 042753 231 DRVWAVG-PVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALE--K--TDVDF 305 (473)
Q Consensus 231 ~~~~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~--~--~~~~~ 305 (473)
-++.||| |+...- + .....++..+.++-.+++++|-+--||-.+--...+..++++.+ . .+.++
T Consensus 381 v~v~yVGHPL~d~i-~----------~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~f 449 (608)
T PRK01021 381 LRTVYLGHPLVETI-S----------SFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQL 449 (608)
T ss_pred CCeEEECCcHHhhc-c----------cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEE
Confidence 5899999 777764 2 01233344444444347789999999986544444555666665 3 24455
Q ss_pred EEEEeCCCccCCcccCCCCchhhHHhhcCCC---eEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecC-cc
Q 042753 306 VYCVREPDERHASQDCGVLPDGFEDRVAGRG---YVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTW-PM 381 (473)
Q Consensus 306 i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n---v~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~-P~ 381 (473)
++..... ...+.+.+.....+ +.+..--...++++.+++ .+.-+|. .++|+...|+||+++ -.
T Consensus 450 vvp~a~~----------~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~ 516 (608)
T PRK01021 450 LVSSANP----------KYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQL 516 (608)
T ss_pred EEecCch----------hhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEec
Confidence 5433221 11122222221111 122110012578999997 5665654 578999999999884 33
Q ss_pred cccchhhHHHHHHH----hc-----ceEEecc---CCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCC
Q 042753 382 DADQYTNAQLLVDQ----LG-----VGIRVGE---GTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGS 449 (473)
Q Consensus 382 ~~DQ~~na~rv~~~----~G-----~G~~l~~---~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs 449 (473)
..=-+..++++.+. .| +|..+-+ ..+++.|++.|.+++ ++|.|+ ..+++.++=-+.+++...+|.+
T Consensus 517 s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~-~~r~~~~~~l~~lr~~Lg~~~~ 594 (608)
T PRK01021 517 RPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTS-QSKEKQKDACRDLYQAMNESAS 594 (608)
T ss_pred CHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCH-HHHHHHHHHHHHHHHHhcCCCC
Confidence 33334556666630 00 1211110 002578999999997 888876 4444444333333333244444
Q ss_pred hH
Q 042753 450 SD 451 (473)
Q Consensus 450 ~~ 451 (473)
+-
T Consensus 595 ~~ 596 (608)
T PRK01021 595 TM 596 (608)
T ss_pred CH
Confidence 33
No 82
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.65 E-value=4e-07 Score=88.13 Aligned_cols=259 Identities=14% Similarity=0.097 Sum_probs=131.5
Q ss_pred HhhHHHHHHHhcCCCCCcEEEe--CCCcc-hHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCCccccCC
Q 042753 89 LHYPALLDWFKSHPSPPVAILS--DFFLG-WTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVDALVSFP 165 (473)
Q Consensus 89 ~~~~~l~~~l~~~~~~pD~VV~--D~~~~-~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p 165 (473)
.....+.+++++. +||+||+ |.... .++.+|..++||++-+....-.. +..
T Consensus 54 ~~~~~~~~~~~~~--~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaGlRs~---------------d~~--------- 107 (346)
T PF02350_consen 54 LAIIELADVLERE--KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAGLRSG---------------DRT--------- 107 (346)
T ss_dssp HHHHHHHHHHHHH--T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES-----S----------------TT---------
T ss_pred HHHHHHHHHHHhc--CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCCCCcc---------------ccC---------
Confidence 4456778888888 9999985 55544 56789999999988764331100 000
Q ss_pred CCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEeccCCCCCCc
Q 042753 166 RVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAVGPVLPPDDD 245 (473)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~vGpl~~~~~~ 245 (473)
........++....+..-+ +..+-...+ .+ .+.-.+..+++.+|...-+. -
T Consensus 108 ----------------------~g~~de~~R~~i~~la~lh--f~~t~~~~~--~L--~~~G~~~~rI~~vG~~~~D~-l 158 (346)
T PF02350_consen 108 ----------------------EGMPDEINRHAIDKLAHLH--FAPTEEARE--RL--LQEGEPPERIFVVGNPGIDA-L 158 (346)
T ss_dssp ----------------------SSTTHHHHHHHHHHH-SEE--EESSHHHHH--HH--HHTT--GGGEEE---HHHHH-H
T ss_pred ----------------------CCCchhhhhhhhhhhhhhh--ccCCHHHHH--HH--HhcCCCCCeEEEEChHHHHH-H
Confidence 0012233333333333322 222321111 11 11111115889999543332 1
Q ss_pred chhhccCCCCCCCChhhh--HHHhcCCCCCcEEEEEeCCcccCC----HHHHHHHHHHHHhC-CCcEEEEEeCCCccCCc
Q 042753 246 LVESMCRGGSSSVPAHDV--LTWLDSRRDESVVYVCFGSRYVLT----AKQIHELAAALEKT-DVDFVYCVREPDERHAS 318 (473)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~V~vs~Gs~~~~~----~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~ 318 (473)
...+ ....+.. ...+.. ..++.|+|++=...... ...+..++++|.+. +.++||.+....
T Consensus 159 ~~~~-------~~~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p----- 225 (346)
T PF02350_consen 159 LQNK-------EEIEEKYKNSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNP----- 225 (346)
T ss_dssp HHHH-------HTTCC-HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-H-----
T ss_pred HHhH-------HHHhhhhhhHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCc-----
Confidence 0000 0011112 122222 57899999995555444 34556677777665 788999998542
Q ss_pred ccCCCCchhhHHhhcC-CCeEeecCccH---HHhhhccCccceeeccCchhHH-HHHhhCCeEecCcccccchhhHHHHH
Q 042753 319 QDCGVLPDGFEDRVAG-RGYVIRGWSQQ---VAILRHKAVGAFLTHCGWNSVL-EGVSAGVVMLTWPMDADQYTNAQLLV 393 (473)
Q Consensus 319 ~~~~~lp~~~~~~~~~-~nv~v~~~~pq---~~lL~~~~v~~~ItHgG~~s~~-eal~~GvP~l~~P~~~DQ~~na~rv~ 393 (473)
.....+.++... +|+++.+-+++ ..+|.++++ +||.+| ++. ||.++|+|+|.+ .|+-..=.-+.
T Consensus 226 ----~~~~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~i---R~~geRqe~r~ 294 (346)
T PF02350_consen 226 ----RGSDIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNI---RDSGERQEGRE 294 (346)
T ss_dssp ----HHHHHHHHHHTT-TTEEEE----HHHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEEC---SSS-S-HHHHH
T ss_pred ----hHHHHHHHHhcccCCEEEECCCCHHHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEe---cCCCCCHHHHh
Confidence 111222222221 48887777654 568889997 999999 555 999999999999 33333333333
Q ss_pred HHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHH
Q 042753 394 DQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARE 435 (473)
Q Consensus 394 ~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~ 435 (473)
. |..+.+. .+.++|.+++++++++. .+.++.+.
T Consensus 295 -~-~~nvlv~------~~~~~I~~ai~~~l~~~-~~~~~~~~ 327 (346)
T PF02350_consen 295 -R-GSNVLVG------TDPEAIIQAIEKALSDK-DFYRKLKN 327 (346)
T ss_dssp -T-TSEEEET------SSHHHHHHHHHHHHH-H-HHHHHHHC
T ss_pred -h-cceEEeC------CCHHHHHHHHHHHHhCh-HHHHhhcc
Confidence 4 6665543 67999999999999874 45444433
No 83
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.64 E-value=4.3e-06 Score=81.83 Aligned_cols=320 Identities=15% Similarity=0.149 Sum_probs=164.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCChh-h----hhhhccCCCCCCeeEEEcCCCCCCCCCChhhH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTL-GLNVTVLITQNNLP-L----LDSLNANHPSTSLQSLVLPQPKWPAGSPATRL 79 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~-~----i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 79 (473)
+||+++ .+++-.+.=+.++.++|.+. +.++.++.+..... . ...... .++... +... -.+... .-
T Consensus 1 ~ki~~v-~GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~----~~~~~~--~~~~-~~~~~~-~~ 71 (365)
T TIGR03568 1 KKICVV-TGTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEK----DGFDID--EKIE-ILLDSD-SN 71 (365)
T ss_pred CeEEEE-EecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHH----cCCCCC--Cccc-cccCCC-CC
Confidence 355544 45777777888888999885 78888888764422 1 221110 122211 1000 001100 00
Q ss_pred HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCC--Ccc-hHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCC
Q 042753 80 LKFMRVLRELHYPALLDWFKSHPSPPVAILSDF--FLG-WTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPD 156 (473)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~--~~~-~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~ 156 (473)
......+. .....+.+++++. +||+||+-. ... .+..+|..+|||++.+.-....
T Consensus 72 ~~~~~~~~-~~~~~~~~~~~~~--~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~rs------------------- 129 (365)
T TIGR03568 72 AGMAKSMG-LTIIGFSDAFERL--KPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEVT------------------- 129 (365)
T ss_pred CCHHHHHH-HHHHHHHHHHHHh--CCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCccC-------------------
Confidence 11122222 3346778889999 999999644 333 6689999999999976443210
Q ss_pred CCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHH-HHhhCCCcEEE
Q 042753 157 NVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHM-KKEMGHDRVWA 235 (473)
Q Consensus 157 ~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~-~~~~~~~~~~~ 235 (473)
.+ . ..+..++....+.... +..+ +. .-+.+ +.-.+..+++.
T Consensus 130 -~~-------~-----------------------~eE~~r~~i~~la~l~--f~~t-~~----~~~~L~~eg~~~~~i~~ 171 (365)
T TIGR03568 130 -EG-------A-----------------------IDESIRHAITKLSHLH--FVAT-EE----YRQRVIQMGEDPDRVFN 171 (365)
T ss_pred -CC-------C-----------------------chHHHHHHHHHHHhhc--cCCC-HH----HHHHHHHcCCCCCcEEE
Confidence 00 0 0000000111110000 1111 00 11111 11111046777
Q ss_pred eccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcc---cCCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 042753 236 VGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRY---VLTAKQIHELAAALEKTDVDFVYCVREP 312 (473)
Q Consensus 236 vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~ 312 (473)
+|-...+. - .... ....+++.+.+.-..+++.|+|++=... ....+.+..+++++.+.+.+++++.+..
T Consensus 172 tG~~~iD~-l----~~~~---~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~ 243 (365)
T TIGR03568 172 VGSPGLDN-I----LSLD---LLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNA 243 (365)
T ss_pred ECCcHHHH-H----Hhhh---ccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCC
Confidence 88433332 0 0000 1122344444432224578888885543 2456789999999988776666665443
Q ss_pred CccCCcccCCCCchhhHHhhc-CCCeEeecCcc---HHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhh
Q 042753 313 DERHASQDCGVLPDGFEDRVA-GRGYVIRGWSQ---QVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTN 388 (473)
Q Consensus 313 ~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~p---q~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~n 388 (473)
. .....+-+.+.+... .+|+.+.+-++ ...++.++++ +||.++.+- .||.+.|+|+|.+- .-|
T Consensus 244 ~-----p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~--~R~--- 310 (365)
T TIGR03568 244 D-----AGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG--TRQ--- 310 (365)
T ss_pred C-----CCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec--CCc---
Confidence 1 000011112222111 35777776554 4668889997 999886655 99999999999874 111
Q ss_pred HHHHHHHhcceEE-eccCCCCCCCHHHHHHHHHHHhC
Q 042753 389 AQLLVDQLGVGIR-VGEGTRNIPESDELARLLAQSVD 424 (473)
Q Consensus 389 a~rv~~~~G~G~~-l~~~~~~~~~~~~l~~~i~~~l~ 424 (473)
.-++ . |..+. + ..+.++|.++++++++
T Consensus 311 -e~~~-~-g~nvl~v------g~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 311 -KGRL-R-ADSVIDV------DPDKEEIVKAIEKLLD 338 (365)
T ss_pred -hhhh-h-cCeEEEe------CCCHHHHHHHHHHHhC
Confidence 1111 2 43322 3 3568999999999654
No 84
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.64 E-value=1e-05 Score=78.30 Aligned_cols=191 Identities=21% Similarity=0.178 Sum_probs=108.8
Q ss_pred CcEEEec-cCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHH---h--CCCc
Q 042753 231 DRVWAVG-PVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALE---K--TDVD 304 (473)
Q Consensus 231 ~~~~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~---~--~~~~ 304 (473)
-++.||| |+...- . . ........+.+ -..++++|.+--||-.+--...+..++++.+ + .+.+
T Consensus 153 ~~~~~VGHPl~d~~-~---------~-~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~ 220 (373)
T PF02684_consen 153 VPVTYVGHPLLDEV-K---------P-EPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQ 220 (373)
T ss_pred CCeEEECCcchhhh-c---------c-CCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 4799999 887765 2 0 11223333333 2247899999999985433333444555543 2 3456
Q ss_pred EEEEEeCCCccCCcccCCCCchhhHHhh--cCCCeEe-ecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecC-c
Q 042753 305 FVYCVREPDERHASQDCGVLPDGFEDRV--AGRGYVI-RGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTW-P 380 (473)
Q Consensus 305 ~i~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~v-~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~-P 380 (473)
+++...... ..+.+.... ...++.+ .-.-.-.++|..+++ .+.-+| ..++|+..+|+|||++ -
T Consensus 221 fvvp~a~~~----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk 287 (373)
T PF02684_consen 221 FVVPVAPEV----------HEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASG-TATLEAALLGVPMVVAYK 287 (373)
T ss_pred EEEecCCHH----------HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEc
Confidence 665544321 111111111 1122222 122245668888887 444444 4689999999999875 3
Q ss_pred ccccchhhHHHHHHHhc------------ceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCC
Q 042753 381 MDADQYTNAQLLVDQLG------------VGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGG 448 (473)
Q Consensus 381 ~~~DQ~~na~rv~~~~G------------~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~g 448 (473)
...=.+..|+++. +.. +-..+- +++.|++.|.+++.++++|. ..++..+...+.+++....|.
T Consensus 288 ~~~lt~~iak~lv-k~~~isL~Niia~~~v~PEli---Q~~~~~~~i~~~~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~ 362 (373)
T PF02684_consen 288 VSPLTYFIAKRLV-KVKYISLPNIIAGREVVPELI---QEDATPENIAAELLELLENP-EKRKKQKELFREIRQLLGPGA 362 (373)
T ss_pred CcHHHHHHHHHhh-cCCEeechhhhcCCCcchhhh---cccCCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHhhhhcc
Confidence 3334445555554 212 222233 67899999999999999997 666666666666665545554
Q ss_pred ChH
Q 042753 449 SSD 451 (473)
Q Consensus 449 s~~ 451 (473)
++.
T Consensus 363 ~~~ 365 (373)
T PF02684_consen 363 SSR 365 (373)
T ss_pred CCH
Confidence 433
No 85
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.64 E-value=3.8e-05 Score=74.29 Aligned_cols=153 Identities=16% Similarity=0.121 Sum_probs=89.2
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhh--cCCCeEeecCccHHH---hh
Q 042753 275 VVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRV--AGRGYVIRGWSQQVA---IL 349 (473)
Q Consensus 275 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~v~~~~pq~~---lL 349 (473)
.+.+..|.... .+....+++++++.+.++++.-.... .+.+ ....... ..+++...+++++.+ ++
T Consensus 172 ~~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~G~~~~-------~~~~-~~~~~~~~~~~~~v~~~G~~~~~~~~~~~ 241 (335)
T cd03802 172 DYLLFLGRISP--EKGPHLAIRAARRAGIPLKLAGPVSD-------PDYF-YREIAPELLDGPDIEYLGEVGGAEKAELL 241 (335)
T ss_pred CEEEEEEeecc--ccCHHHHHHHHHhcCCeEEEEeCCCC-------HHHH-HHHHHHhcccCCcEEEeCCCCHHHHHHHH
Confidence 34555677732 23345577778777777665433321 0111 1111111 246888999998754 67
Q ss_pred hccCccceee--ccC-chhHHHHHhhCCeEecCcccccchhhHHHHHHHhc-ceEEeccCCCCCCCHHHHHHHHHHHhCC
Q 042753 350 RHKAVGAFLT--HCG-WNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLG-VGIRVGEGTRNIPESDELARLLAQSVDG 425 (473)
Q Consensus 350 ~~~~v~~~It--HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G-~G~~l~~~~~~~~~~~~l~~~i~~~l~~ 425 (473)
+.+++-++-+ +-| ..++.||+++|+|+|+.... .....+. . | .|...+ . .+++.++|.+++..
T Consensus 242 ~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~-~-~~~g~l~~---~----~~~l~~~l~~l~~~ 308 (335)
T cd03802 242 GNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVE-D-GVTGFLVD---S----VEELAAAVARADRL 308 (335)
T ss_pred HhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhee-C-CCcEEEeC---C----HHHHHHHHHHHhcc
Confidence 8888722222 233 45899999999999987543 3334444 4 4 677666 2 89999999998765
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 042753 426 PRRERLKARELSGAALSAVVKGGSSDRDLNDFIKR 460 (473)
Q Consensus 426 ~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~ 460 (473)
. ++++++. . .+.-+.+..++++++.
T Consensus 309 ~---~~~~~~~---~----~~~~s~~~~~~~~~~~ 333 (335)
T cd03802 309 D---RAACRRR---A----ERRFSAARMVDDYLAL 333 (335)
T ss_pred H---HHHHHHH---H----HHhCCHHHHHHHHHHH
Confidence 3 2233322 1 2234566666666654
No 86
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.64 E-value=1.9e-05 Score=77.34 Aligned_cols=157 Identities=20% Similarity=0.222 Sum_probs=85.4
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHhCC--CcEEEEEeCCCccCCcccCCCCchhhHHhh-cCCCeEeecCccHHH---hh
Q 042753 276 VYVCFGSRYVLTAKQIHELAAALEKTD--VDFVYCVREPDERHASQDCGVLPDGFEDRV-AGRGYVIRGWSQQVA---IL 349 (473)
Q Consensus 276 V~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~pq~~---lL 349 (473)
.++..|+... ...+..+++++++.. .++ +.++... ..+.+-+.+.++. ..++|.+.+++|+.+ ++
T Consensus 195 ~i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l-~ivG~~~------~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~ 265 (363)
T cd04955 195 YYLLVGRIVP--ENNIDDLIEAFSKSNSGKKL-VIVGNAD------HNTPYGKLLKEKAAADPRIIFVGPIYDQELLELL 265 (363)
T ss_pred EEEEEecccc--cCCHHHHHHHHHhhccCceE-EEEcCCC------CcchHHHHHHHHhCCCCcEEEccccChHHHHHHH
Confidence 3456788753 233445666666543 443 3444421 0011112222112 356888999999865 45
Q ss_pred hccCccceeeccCc-----hhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhC
Q 042753 350 RHKAVGAFLTHCGW-----NSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVD 424 (473)
Q Consensus 350 ~~~~v~~~ItHgG~-----~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~ 424 (473)
..+++ ++.++-. +++.||+++|+|+|+...... ...+. ..|.... .. +.+.++|.++++
T Consensus 266 ~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~~---~~g~~~~---~~----~~l~~~i~~l~~ 329 (363)
T cd04955 266 RYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVLG---DKAIYFK---VG----DDLASLLEELEA 329 (363)
T ss_pred HhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceeec---CCeeEec---Cc----hHHHHHHHHHHh
Confidence 55676 5554433 479999999999998754422 22222 1244444 21 129999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042753 425 GPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRI 461 (473)
Q Consensus 425 ~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 461 (473)
++ ...++ +++..++.....-|.+...+++++.+
T Consensus 330 ~~-~~~~~---~~~~~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 330 DP-EEVSA---MAKAARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred CH-HHHHH---HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 86 33322 23333322233455666667766543
No 87
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.64 E-value=7.8e-06 Score=77.38 Aligned_cols=214 Identities=18% Similarity=0.141 Sum_probs=117.9
Q ss_pred HHhhHHHHHHHHHhhCCCcEEEec-cCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHH
Q 042753 214 AELERVYIDHMKKEMGHDRVWAVG-PVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIH 292 (473)
Q Consensus 214 ~~le~~~~~~~~~~~~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~ 292 (473)
..+|+.+++. .+ -.+.||| |+...- ++ ...++.+.+-+.-..+++++.+--||-.+--...+.
T Consensus 144 lPFE~~~y~k----~g-~~~~yVGHpl~d~i-~~----------~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~ 207 (381)
T COG0763 144 LPFEPAFYDK----FG-LPCTYVGHPLADEI-PL----------LPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLP 207 (381)
T ss_pred cCCCHHHHHh----cC-CCeEEeCChhhhhc-cc----------cccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHH
Confidence 3456655542 22 2489999 676665 31 223455666665556889999999998653333333
Q ss_pred HHHHHHHh-----CCCcEEEEEeCCCccCCcccCCCCchhhHHhhcC-CCeEeecCccHHHhhhccCccceeeccCchhH
Q 042753 293 ELAAALEK-----TDVDFVYCVREPDERHASQDCGVLPDGFEDRVAG-RGYVIRGWSQQVAILRHKAVGAFLTHCGWNSV 366 (473)
Q Consensus 293 ~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~-~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~ 366 (473)
.+.++.++ .+.+|+.-+.... .+.+-..+.++... .+.++.+- --.+.+..+++ .+.-+|. -+
T Consensus 208 ~f~~a~~~l~~~~~~~~~vlp~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~aD~--al~aSGT-~t 276 (381)
T COG0763 208 PFVQAAQELKARYPDLKFVLPLVNAK-------YRRIIEEALKWEVAGLSLILIDG-EKRKAFAAADA--ALAASGT-AT 276 (381)
T ss_pred HHHHHHHHHHhhCCCceEEEecCcHH-------HHHHHHHHhhccccCceEEecCc-hHHHHHHHhhH--HHHhccH-HH
Confidence 34444332 3567776665432 01111111111110 11222111 11336777886 4555553 47
Q ss_pred HHHHhhCCeEecC-cccccchhhHHHHHHHhc------------ceEEeccCCCCCCCHHHHHHHHHHHhCCc---HHHH
Q 042753 367 LEGVSAGVVMLTW-PMDADQYTNAQLLVDQLG------------VGIRVGEGTRNIPESDELARLLAQSVDGP---RRER 430 (473)
Q Consensus 367 ~eal~~GvP~l~~-P~~~DQ~~na~rv~~~~G------------~G~~l~~~~~~~~~~~~l~~~i~~~l~~~---~~~~ 430 (473)
+|+..+|+|||+. =...=-+..+++.. +.. +...+- .+..+++.|.+++..++.|. ..++
T Consensus 277 LE~aL~g~P~Vv~Yk~~~it~~iak~lv-k~~yisLpNIi~~~~ivPEli---q~~~~pe~la~~l~~ll~~~~~~~~~~ 352 (381)
T COG0763 277 LEAALAGTPMVVAYKVKPITYFIAKRLV-KLPYVSLPNILAGREIVPELI---QEDCTPENLARALEELLLNGDRREALK 352 (381)
T ss_pred HHHHHhCCCEEEEEeccHHHHHHHHHhc-cCCcccchHHhcCCccchHHH---hhhcCHHHHHHHHHHHhcChHhHHHHH
Confidence 8999999999875 11111222333333 111 222222 46789999999999999986 3444
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 042753 431 LKARELSGAALSAVVKGGSSDRDLNDFIKRIN 462 (473)
Q Consensus 431 ~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~ 462 (473)
+...++.+.+ +.+++++.+++.+++.+.
T Consensus 353 ~~~~~l~~~l----~~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 353 EKFRELHQYL----REDPASEIAAQAVLELLL 380 (381)
T ss_pred HHHHHHHHHH----cCCcHHHHHHHHHHHHhc
Confidence 4455555554 455678888888877654
No 88
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.62 E-value=7.9e-05 Score=73.85 Aligned_cols=168 Identities=18% Similarity=0.180 Sum_probs=93.5
Q ss_pred CcEEEEEeCCcccCCHHHHHHHHHHHHhC--CCcEEEEEeCCCccCCcccCCCCchhhHHhhc-----CCCeE-eecCcc
Q 042753 273 ESVVYVCFGSRYVLTAKQIHELAAALEKT--DVDFVYCVREPDERHASQDCGVLPDGFEDRVA-----GRGYV-IRGWSQ 344 (473)
Q Consensus 273 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~-----~~nv~-v~~~~p 344 (473)
...+++..|.... .+-+..+++++++. +.++++..+... . ..+-+.+.+... ..+++ +..+++
T Consensus 200 ~~~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~----~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 270 (388)
T TIGR02149 200 SRPYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPD----T---PEVAEEVRQAVALLDRNRTGIIWINKMLP 270 (388)
T ss_pred CceEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCC----c---HHHHHHHHHHHHHhccccCceEEecCCCC
Confidence 4456667787753 23345566666553 456555544431 0 111122222111 12344 346777
Q ss_pred HH---HhhhccCccceeec----cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCC----HH
Q 042753 345 QV---AILRHKAVGAFLTH----CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPE----SD 413 (473)
Q Consensus 345 q~---~lL~~~~v~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~----~~ 413 (473)
+. +++..+++ +|.= |...+++||+++|+|+|+... ......+... +.|..++ ..+.+ .+
T Consensus 271 ~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~---~~~~~~~~~~~ 340 (388)
T TIGR02149 271 KEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVP---PDNSDADGFQA 340 (388)
T ss_pred HHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcC---CCCCcccchHH
Confidence 54 46788887 5542 334578999999999998654 3455556533 5788887 33222 27
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 414 ELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 414 ~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
++.++|.++++|+ ..+++. ++..++.+...-+.+..++++++.+++
T Consensus 341 ~l~~~i~~l~~~~-~~~~~~---~~~a~~~~~~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 341 ELAKAINILLADP-ELAKKM---GIAGRKRAEEEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred HHHHHHHHHHhCH-HHHHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8999999999986 433222 222221112334566667777766654
No 89
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.58 E-value=3.2e-05 Score=75.59 Aligned_cols=137 Identities=14% Similarity=0.094 Sum_probs=81.3
Q ss_pred CCcEEEEEeCCccc-CCHHHHHHHHHHHHhC--CCcEEEEEeCCCccCCcccCCCCchhhHHh---h-cCCCeEeecCcc
Q 042753 272 DESVVYVCFGSRYV-LTAKQIHELAAALEKT--DVDFVYCVREPDERHASQDCGVLPDGFEDR---V-AGRGYVIRGWSQ 344 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~---~-~~~nv~v~~~~p 344 (473)
.++.+++..|+... ...+.+-..+..+.+. +.++++ ++... ..+.+.+. . ...++...++..
T Consensus 190 ~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~i-vG~g~----------~~~~~~~~~~~~~~~~~v~~~g~~~ 258 (358)
T cd03812 190 EDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLL-VGDGE----------LEEEIKKKVKELGLEDKVIFLGVRN 258 (358)
T ss_pred CCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEE-EeCCc----------hHHHHHHHHHhcCCCCcEEEecccC
Confidence 45677778888753 2334444445555433 333333 33321 11112111 1 235677777654
Q ss_pred H-HHhhhccCccceeec----cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHH
Q 042753 345 Q-VAILRHKAVGAFLTH----CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLL 419 (473)
Q Consensus 345 q-~~lL~~~~v~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i 419 (473)
+ .+++..+++ +|.- |-..+++||+++|+|+|+....+ ....+. . +.|.... .-+.+++.++|
T Consensus 259 ~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~-~-~~~~~~~-----~~~~~~~a~~i 325 (358)
T cd03812 259 DVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLT-D-LVKFLSL-----DESPEIWAEEI 325 (358)
T ss_pred CHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhc-c-CccEEeC-----CCCHHHHHHHH
Confidence 3 558888887 5543 44679999999999999865443 333444 4 5565554 23579999999
Q ss_pred HHHhCCcHHHHHHH
Q 042753 420 AQSVDGPRRERLKA 433 (473)
Q Consensus 420 ~~~l~~~~~~~~~a 433 (473)
.++++|+ ..+++.
T Consensus 326 ~~l~~~~-~~~~~~ 338 (358)
T cd03812 326 LKLKSED-RRERSS 338 (358)
T ss_pred HHHHhCc-chhhhh
Confidence 9999998 555443
No 90
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.55 E-value=0.00024 Score=70.11 Aligned_cols=113 Identities=18% Similarity=0.175 Sum_probs=72.0
Q ss_pred CCeEeecCcc-HHHhhhccCccceee--c--cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCC
Q 042753 335 RGYVIRGWSQ-QVAILRHKAVGAFLT--H--CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNI 409 (473)
Q Consensus 335 ~nv~v~~~~p-q~~lL~~~~v~~~It--H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 409 (473)
.++.+.++.. -.+++..+++ +|. + |-..++.||+++|+|+|+.... .+...+.+. ..|..++ .
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~~-~~g~~~~-----~ 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQHG-VTGALVP-----P 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcCC-CceEEeC-----C
Confidence 3455545443 3568888997 552 2 4467999999999999996643 345555523 4677776 3
Q ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 410 PESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 410 ~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
-+.+++.++|.++++++ ..++ ++++..++.+...-+.+..++++++...+
T Consensus 323 ~d~~~la~~i~~l~~~~-~~~~---~~~~~a~~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 323 GDAVALARALQPYVSDP-AARR---AHGAAGRARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred CCHHHHHHHHHHHHhCH-HHHH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 57889999999999886 4332 22233332223345567777777766554
No 91
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.54 E-value=4.2e-05 Score=74.64 Aligned_cols=89 Identities=16% Similarity=0.201 Sum_probs=60.2
Q ss_pred cCCCeEeecCccHHH---hhhccCccceeec----cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccC
Q 042753 333 AGRGYVIRGWSQQVA---ILRHKAVGAFLTH----CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEG 405 (473)
Q Consensus 333 ~~~nv~v~~~~pq~~---lL~~~~v~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 405 (473)
...++...+++|+.+ ++..+++ +|.- |..+++.||+++|+|+|+.... .....+. ..|..+.
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~---~~~~~~~-- 319 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAG---DAALYFD-- 319 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----Cccceec---CceeeeC--
Confidence 356788889998764 6777886 4322 3456899999999999986542 2222222 2355555
Q ss_pred CCCCCCHHHHHHHHHHHhCCcHHHHHHHHHH
Q 042753 406 TRNIPESDELARLLAQSVDGPRRERLKAREL 436 (473)
Q Consensus 406 ~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~ 436 (473)
.-+.+++.++|.++++|+ ..+.+..+-
T Consensus 320 ---~~~~~~~~~~i~~l~~~~-~~~~~~~~~ 346 (365)
T cd03809 320 ---PLDPEALAAAIERLLEDP-ALREELRER 346 (365)
T ss_pred ---CCCHHHHHHHHHHHhcCH-HHHHHHHHH
Confidence 237899999999999987 555544433
No 92
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.52 E-value=6.1e-05 Score=74.27 Aligned_cols=111 Identities=19% Similarity=0.151 Sum_probs=68.2
Q ss_pred CCeEeecCc--cH---HHhhhccCccceeecc----CchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccC
Q 042753 335 RGYVIRGWS--QQ---VAILRHKAVGAFLTHC----GWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEG 405 (473)
Q Consensus 335 ~nv~v~~~~--pq---~~lL~~~~v~~~ItHg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 405 (473)
.++.+..+. ++ .++++.+++ |+.-+ -..++.||+++|+|+|+.... .....+.+. +.|...+
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~-- 322 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD-- 322 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC--
Confidence 456666765 33 246788887 66433 245999999999999986543 233445423 4576554
Q ss_pred CCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 406 TRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 406 ~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
+.+.+..+|.++++++ +.++...+-+.. .+.+.-+-+..++++++.+.+
T Consensus 323 -----~~~~~a~~i~~ll~~~-~~~~~~~~~a~~---~~~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 323 -----TVEEAAVRILYLLRDP-ELRRKMGANARE---HVRENFLITRHLKDYLYLISK 371 (372)
T ss_pred -----CcHHHHHHHHHHHcCH-HHHHHHHHHHHH---HHHHHcCHHHHHHHHHHHHHh
Confidence 3567888999999886 544333222222 112335567777777776654
No 93
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.51 E-value=0.00075 Score=73.00 Aligned_cols=176 Identities=14% Similarity=0.157 Sum_probs=96.7
Q ss_pred hhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCC-----CcEEEEEeCCCccCCcccCCCCc-------hhh-
Q 042753 262 DVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTD-----VDFVYCVREPDERHASQDCGVLP-------DGF- 328 (473)
Q Consensus 262 ~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~-----~~~i~~~~~~~~~~~~~~~~~lp-------~~~- 328 (473)
.+..|+.. ++++ ++++.|.... .+-+..+++|+.... ..+.++++... +.+.+. ..+
T Consensus 469 ~l~r~~~~-pdkp-vIL~VGRL~p--~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gd------d~d~l~~~~~~~l~~L~ 538 (1050)
T TIGR02468 469 EIMRFFTN-PRKP-MILALARPDP--KKNITTLVKAFGECRPLRELANLTLIMGNRD------DIDEMSSGSSSVLTSVL 538 (1050)
T ss_pred HHHhhccc-CCCc-EEEEEcCCcc--ccCHHHHHHHHHHhHhhccCCCEEEEEecCc------hhhhhhccchHHHHHHH
Confidence 45666654 3444 5566677653 333445666665431 24445555421 001110 111
Q ss_pred --HHhhc-CCCeEeecCccHHH---hhhcc----Cccceeec----cCchhHHHHHhhCCeEecCcccccchhhHHHHHH
Q 042753 329 --EDRVA-GRGYVIRGWSQQVA---ILRHK----AVGAFLTH----CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVD 394 (473)
Q Consensus 329 --~~~~~-~~nv~v~~~~pq~~---lL~~~----~v~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~ 394 (473)
.++.. ..+|...+++++.+ ++..+ ++ ||.- |=..+++||+++|+|+|+....+ ....+.
T Consensus 539 ~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~- 611 (1050)
T TIGR02468 539 KLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHR- 611 (1050)
T ss_pred HHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhc-
Confidence 12222 34577778888765 44444 34 6653 33468999999999999986432 333333
Q ss_pred HhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 042753 395 QLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 395 ~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~ 464 (473)
.-.-|+.++ .-+.++|.++|.++++|+ ..+++..+-+.... . .-+-+..++++++.+...
T Consensus 612 ~g~nGlLVd-----P~D~eaLA~AL~~LL~Dp-elr~~m~~~gr~~v---~-~FSWe~ia~~yl~~i~~~ 671 (1050)
T TIGR02468 612 VLDNGLLVD-----PHDQQAIADALLKLVADK-QLWAECRQNGLKNI---H-LFSWPEHCKTYLSRIASC 671 (1050)
T ss_pred cCCcEEEEC-----CCCHHHHHHHHHHHhhCH-HHHHHHHHHHHHHH---H-HCCHHHHHHHHHHHHHHH
Confidence 313587776 357899999999999987 44433332222211 1 144556666666665543
No 94
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.49 E-value=9e-06 Score=77.16 Aligned_cols=355 Identities=15% Similarity=0.130 Sum_probs=188.5
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCC-CeEEEEeCCCCh--hhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLG-LNVTVLITQNNL--PLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLK 81 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rG-h~Vt~~~~~~~~--~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~ 81 (473)
|+||++ .++++=.+.=+.+|.+++.+.+ .+..++.+.... +.......- .++.. |....+...+.. .
T Consensus 3 ~~Kv~~-I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~---~~i~~---pdy~L~i~~~~~---t 72 (383)
T COG0381 3 MLKVLT-IFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLEL---FGIRK---PDYDLNIMKPGQ---T 72 (383)
T ss_pred ceEEEE-EEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHH---hCCCC---CCcchhccccCC---C
Confidence 445544 4568888889999999999986 777777776555 444433110 01221 111111111112 2
Q ss_pred HHHHHHHHhhHHHHHHHhcCCCCCcEEEe--CCCcc-hHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCC
Q 042753 82 FMRVLRELHYPALLDWFKSHPSPPVAILS--DFFLG-WTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNV 158 (473)
Q Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~pD~VV~--D~~~~-~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 158 (473)
+.+.+. .....+.+++.+. +||+|++ |.... +++++|...+||+.-+-...-. .
T Consensus 73 l~~~t~-~~i~~~~~vl~~~--kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt-------------------~- 129 (383)
T COG0381 73 LGEITG-NIIEGLSKVLEEE--KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRT-------------------G- 129 (383)
T ss_pred HHHHHH-HHHHHHHHHHHhh--CCCEEEEeCCcchHHHHHHHHHHhCCceEEEeccccc-------------------C-
Confidence 333334 5557788899999 9999985 55544 5578889999998876433210 0
Q ss_pred CccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEecc
Q 042753 159 DALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAVGP 238 (473)
Q Consensus 159 ~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~vGp 238 (473)
..+ +| .-++ ++....+... .+.+| +..... .++.-.+-.+++.+|-
T Consensus 130 --~~~---~P-----------EE~N------------R~l~~~~S~~--hfapt--e~ar~n--Ll~EG~~~~~IfvtGn 175 (383)
T COG0381 130 --DLY---FP-----------EEIN------------RRLTSHLSDL--HFAPT--EIARKN--LLREGVPEKRIFVTGN 175 (383)
T ss_pred --CCC---Cc-----------HHHH------------HHHHHHhhhh--hcCCh--HHHHHH--HHHcCCCccceEEeCC
Confidence 000 11 1000 0000000000 01111 111111 1122223035777883
Q ss_pred CCCCCCcchhhccCCCCCCCChhhhHHH-hcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHH----hCCCcEEEEEeCCC
Q 042753 239 VLPPDDDLVESMCRGGSSSVPAHDVLTW-LDSRRDESVVYVCFGSRYVLTAKQIHELAAALE----KTDVDFVYCVREPD 313 (473)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~----~~~~~~i~~~~~~~ 313 (473)
...+... ....+ ...+...... ++. .++..|++|+=-..+.. +.++.+.+++. +. ..+.++++...
T Consensus 176 t~iDal~--~~~~~----~~~~~~~~~~~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~~viyp~H~ 246 (383)
T COG0381 176 TVIDALL--NTRDR----VLEDSKILAKGLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEY-PDVIVIYPVHP 246 (383)
T ss_pred hHHHHHH--HHHhh----hccchhhHHhhhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCceEEEeCCC
Confidence 3222100 00000 1111122211 222 46779999886655544 44555555543 34 23444444432
Q ss_pred ccCCcccCCCCchhhHHhhcC-CCeEee---cCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhH
Q 042753 314 ERHASQDCGVLPDGFEDRVAG-RGYVIR---GWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNA 389 (473)
Q Consensus 314 ~~~~~~~~~~lp~~~~~~~~~-~nv~v~---~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na 389 (473)
. ..+-+-...+..+ +++.+. +|.+...++.++.+ ++|.+|. -.-||-..|+|++++-...++|.
T Consensus 247 -----~--~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE-- 314 (383)
T COG0381 247 -----R--PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE-- 314 (383)
T ss_pred -----C--hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc--
Confidence 0 1111111233333 356654 45567778999986 8998874 46799999999999988888887
Q ss_pred HHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042753 390 QLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRI 461 (473)
Q Consensus 390 ~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 461 (473)
+++ . |.-+.+. .+.+.|.+++.++++++ ++.++.+....-. .+|.++++-++.+.++.
T Consensus 315 -~v~-a-gt~~lvg------~~~~~i~~~~~~ll~~~-~~~~~m~~~~npY----gdg~as~rIv~~l~~~~ 372 (383)
T COG0381 315 -GVE-A-GTNILVG------TDEENILDAATELLEDE-EFYERMSNAKNPY----GDGNASERIVEILLNYF 372 (383)
T ss_pred -cee-c-CceEEeC------ccHHHHHHHHHHHhhCh-HHHHHHhcccCCC----cCcchHHHHHHHHHHHh
Confidence 444 5 6555554 56799999999999997 7776665554443 33444454444444443
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.41 E-value=0.0011 Score=69.73 Aligned_cols=111 Identities=18% Similarity=0.158 Sum_probs=71.1
Q ss_pred CCCeEeecCccH-HHhhhccCccceee---ccC-chhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCC
Q 042753 334 GRGYVIRGWSQQ-VAILRHKAVGAFLT---HCG-WNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRN 408 (473)
Q Consensus 334 ~~nv~v~~~~pq-~~lL~~~~v~~~It---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 408 (473)
.++|.+.+|.++ ..+|..+++ ||. +.| -++++||+++|+|+|+.... .....|.+. ..|..++ ..
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~---~~ 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLP---AD 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeC---CC
Confidence 356888888875 447888887 554 444 56899999999999997643 344455522 3688887 56
Q ss_pred CCCHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042753 409 IPESDELARLLAQSVDGP---RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRI 461 (473)
Q Consensus 409 ~~~~~~l~~~i~~~l~~~---~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 461 (473)
+.+.+++.+++.+++.+. +.+++++++... ..-|.+..++++++..
T Consensus 643 d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~-------~~FS~~~~~~~~~~lY 691 (694)
T PRK15179 643 TVTAPDVAEALARIHDMCAADPGIARKAADWAS-------ARFSLNQMIASTVRCY 691 (694)
T ss_pred CCChHHHHHHHHHHHhChhccHHHHHHHHHHHH-------HhCCHHHHHHHHHHHh
Confidence 666667777776665432 266666554432 2234555666665543
No 96
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.41 E-value=0.00037 Score=69.50 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=74.6
Q ss_pred CCCeEeecCccHHH---hhhccCccceeec---------cCc-hhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceE
Q 042753 334 GRGYVIRGWSQQVA---ILRHKAVGAFLTH---------CGW-NSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGI 400 (473)
Q Consensus 334 ~~nv~v~~~~pq~~---lL~~~~v~~~ItH---------gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~ 400 (473)
.+++.+.+|+|+.+ ++..+++ ||.- -|. ++++||+++|+|+|+.... .....+.+. ..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-CceE
Confidence 45788889999865 6777887 5542 244 5789999999999987543 344455422 4677
Q ss_pred EeccCCCCCCCHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 401 RVGEGTRNIPESDELARLLAQSVD-GPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 401 ~l~~~~~~~~~~~~l~~~i~~~l~-~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
.++ .-+.+++.++|.++++ |+ +.++ ++++..++.+...-+.+..++++.+.+.+
T Consensus 351 lv~-----~~d~~~la~ai~~l~~~d~-~~~~---~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 351 LVP-----ENDAQALAQRLAAFSQLDT-DELA---PVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred EeC-----CCCHHHHHHHHHHHHhCCH-HHHH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 776 3479999999999998 76 3322 22222222223334566777777776654
No 97
>PLN02275 transferase, transferring glycosyl groups
Probab=98.40 E-value=0.001 Score=65.49 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=52.0
Q ss_pred CCeEeec-CccHHHh---hhccCccceee-c-----cC-chhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEec
Q 042753 335 RGYVIRG-WSQQVAI---LRHKAVGAFLT-H-----CG-WNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVG 403 (473)
Q Consensus 335 ~nv~v~~-~~pq~~l---L~~~~v~~~It-H-----gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~ 403 (473)
+|++... |+|+.++ |+.+++ +|. + -| -++++||+++|+|+|+... ..+...+.+. +.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC
Confidence 4555544 7887554 888998 553 2 12 3579999999999999743 2355556533 5787765
Q ss_pred cCCCCCCCHHHHHHHHHHHh
Q 042753 404 EGTRNIPESDELARLLAQSV 423 (473)
Q Consensus 404 ~~~~~~~~~~~l~~~i~~~l 423 (473)
+.+++.++|.++|
T Consensus 359 -------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -------SSSELADQLLELL 371 (371)
T ss_pred -------CHHHHHHHHHHhC
Confidence 3788999998875
No 98
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.38 E-value=0.0002 Score=71.24 Aligned_cols=111 Identities=24% Similarity=0.266 Sum_probs=71.1
Q ss_pred cCCCeEeecCccHH-HhhhccCcccee--ec--cCc-hhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCC
Q 042753 333 AGRGYVIRGWSQQV-AILRHKAVGAFL--TH--CGW-NSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGT 406 (473)
Q Consensus 333 ~~~nv~v~~~~pq~-~lL~~~~v~~~I--tH--gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 406 (473)
..+++.+.+++++. .++..+++ +| .+ .|. +.+.||+++|+|+|+.+...+.. .... |.|..+.
T Consensus 278 ~~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~--- 346 (397)
T TIGR03087 278 ALPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA--- 346 (397)
T ss_pred cCCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC---
Confidence 35678888999863 47888887 55 22 354 36999999999999987543321 1113 5665553
Q ss_pred CCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042753 407 RNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRI 461 (473)
Q Consensus 407 ~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 461 (473)
-+.+++.++|.++++|+ ..+++ +++..++.+...-+-+..++++.+.+
T Consensus 347 ---~~~~~la~ai~~ll~~~-~~~~~---~~~~ar~~v~~~fsw~~~~~~~~~~l 394 (397)
T TIGR03087 347 ---ADPADFAAAILALLANP-AEREE---LGQAARRRVLQHYHWPRNLARLDALL 394 (397)
T ss_pred ---CCHHHHHHHHHHHHcCH-HHHHH---HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 46899999999999986 43322 22222222233355666666666554
No 99
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.36 E-value=0.0022 Score=67.88 Aligned_cols=127 Identities=14% Similarity=0.151 Sum_probs=72.0
Q ss_pred CCccEEEEEcCCC-------------CCChHHHHHHHHH--------HHhCCC----eEEEEeCCCCh-------hhhhh
Q 042753 3 PAGAHILVYPFPT-------------SGHIIPLLDLTNR--------LLTLGL----NVTVLITQNNL-------PLLDS 50 (473)
Q Consensus 3 ~~~~~Il~~~~~~-------------~GH~~p~l~La~~--------L~~rGh----~Vt~~~~~~~~-------~~i~~ 50 (473)
|-.+||++++..+ .|+..=.+.+|++ |+++|| +|+++|-.... +.++.
T Consensus 253 p~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~ 332 (784)
T TIGR02470 253 PMVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEK 332 (784)
T ss_pred CccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccccccccccc
Confidence 3458898777544 3555455667776 568899 77788864221 11122
Q ss_pred hccCCCCCCeeEEEcCCCCCCC--CCChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHhCC
Q 042753 51 LNANHPSTSLQSLVLPQPKWPA--GSPATRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG--WTQGLAAELGL 126 (473)
Q Consensus 51 ~~~~~~~~~~~f~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~gi 126 (473)
. ...++.+...+|+..... ++..-.-..++..+.+........+.++...+||+|++..... .+..+|+++||
T Consensus 333 ~---~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lgV 409 (784)
T TIGR02470 333 V---YGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKLGV 409 (784)
T ss_pred c---cCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcCC
Confidence 1 112578888888654322 1211112234444452223333334434333799999976544 46789999999
Q ss_pred CcEEEe
Q 042753 127 PRVVFS 132 (473)
Q Consensus 127 P~v~~~ 132 (473)
|.+.+.
T Consensus 410 P~v~t~ 415 (784)
T TIGR02470 410 TQCTIA 415 (784)
T ss_pred CEEEEC
Confidence 977653
No 100
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.36 E-value=0.00083 Score=67.14 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=52.0
Q ss_pred EeecCccHHHhhhccCccceeec----cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHH
Q 042753 338 VIRGWSQQVAILRHKAVGAFLTH----CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESD 413 (473)
Q Consensus 338 ~v~~~~pq~~lL~~~~v~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~ 413 (473)
+...+.+..+++...++ ||.- +=.++++||+++|+|+|+.-..+ + ..+.+. +-|...+ +.+
T Consensus 287 vf~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~~-------~~~ 351 (462)
T PLN02846 287 VYPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTYD-------DGK 351 (462)
T ss_pred EECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEecC-------CHH
Confidence 34566667779999987 8776 34678999999999999986443 1 333312 3343332 588
Q ss_pred HHHHHHHHHhCCc
Q 042753 414 ELARLLAQSVDGP 426 (473)
Q Consensus 414 ~l~~~i~~~l~~~ 426 (473)
++.+++.++|+++
T Consensus 352 ~~a~ai~~~l~~~ 364 (462)
T PLN02846 352 GFVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHHccC
Confidence 9999999999865
No 101
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.35 E-value=3.6e-06 Score=67.98 Aligned_cols=116 Identities=18% Similarity=0.197 Sum_probs=81.0
Q ss_pred CcEEEEEeCCcccCC---HHHHHHHHHHHHhCCC-cEEEEEeCCCccCCcccCCCCchhhHHhhcCCC--eEeecCccH-
Q 042753 273 ESVVYVCFGSRYVLT---AKQIHELAAALEKTDV-DFVYCVREPDERHASQDCGVLPDGFEDRVAGRG--YVIRGWSQQ- 345 (473)
Q Consensus 273 ~~~V~vs~Gs~~~~~---~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n--v~v~~~~pq- 345 (473)
...+||+-||..... .-.-.++.+.|.+.+. +.|..++.+. .-.++....-....+ +...+|-|-
T Consensus 3 ~~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~--------~~~~d~~~~~~k~~gl~id~y~f~psl 74 (170)
T KOG3349|consen 3 LMTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQ--------PFFGDPIDLIRKNGGLTIDGYDFSPSL 74 (170)
T ss_pred ceEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCc--------cCCCCHHHhhcccCCeEEEEEecCccH
Confidence 457999999986311 1123457788888875 7788888762 113333322112233 344577775
Q ss_pred HHhhhccCccceeeccCchhHHHHHhhCCeEecCcc----cccchhhHHHHHHHhcce
Q 042753 346 VAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPM----DADQYTNAQLLVDQLGVG 399 (473)
Q Consensus 346 ~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~rv~~~~G~G 399 (473)
.+....+++ +|.|+|.||.+|.|..|+|.|+++. ...|-..|..+++. |.=
T Consensus 75 ~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL 129 (170)
T KOG3349|consen 75 TEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYL 129 (170)
T ss_pred HHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcE
Confidence 556666887 9999999999999999999999996 46899999999955 543
No 102
>PLN00142 sucrose synthase
Probab=98.12 E-value=0.0045 Score=65.61 Aligned_cols=108 Identities=14% Similarity=0.150 Sum_probs=60.3
Q ss_pred HHHHHHHhCCCeEE----EEeCCC--C-----hhhhhhhccCCCCCCeeEEEcCCCCCCC-CCChhhHHHHHHHHHHHhh
Q 042753 24 DLTNRLLTLGLNVT----VLITQN--N-----LPLLDSLNANHPSTSLQSLVLPQPKWPA-GSPATRLLKFMRVLRELHY 91 (473)
Q Consensus 24 ~La~~L~~rGh~Vt----~~~~~~--~-----~~~i~~~~~~~~~~~~~f~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ 91 (473)
.++++|+++||+|+ ++|--. . .+.++.. ...++.+...+|+...++ ++..-.-..++..+.+...
T Consensus 319 el~~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v---~~~~~~~I~rvP~g~~~~~l~~~i~ke~l~p~L~~f~~ 395 (815)
T PLN00142 319 EMLLRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLEKV---SGTEHSHILRVPFRTEKGILRKWISRFDVWPYLETFAE 395 (815)
T ss_pred HHHHHHHhcCCCccceeEEEEeccCCccCCcccCcceec---cCCCceEEEecCCCCCccccccccCHHHHHHHHHHHHH
Confidence 35678888999775 766421 1 1112222 112467787888654322 2211111234444442223
Q ss_pred HHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHhCCCcEEEecc
Q 042753 92 PALLDWFKSHPSPPVAILSDFFLG--WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 92 ~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~giP~v~~~~~ 134 (473)
.....+.++...+||+|....... .+..+++++|||.+.+..+
T Consensus 396 ~~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~Hs 440 (815)
T PLN00142 396 DAASEILAELQGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHA 440 (815)
T ss_pred HHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHhCCCEEEEccc
Confidence 333344344433799999986544 4669999999999986544
No 103
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.10 E-value=0.001 Score=64.96 Aligned_cols=125 Identities=16% Similarity=0.188 Sum_probs=82.0
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHH---Hhhhcc
Q 042753 276 VYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQV---AILRHK 352 (473)
Q Consensus 276 V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~---~lL~~~ 352 (473)
.++..|+... ......+++++++.+.+++++ +... -.+.+.+ ...+||.+.+++|+. .++..+
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~iv-G~g~----------~~~~l~~-~~~~~V~~~g~~~~~~~~~~~~~a 262 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVI-GDGP----------ELDRLRA-KAGPNVTFLGRVSDEELRDLYARA 262 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEE-ECCh----------hHHHHHh-hcCCCEEEecCCCHHHHHHHHHhC
Confidence 3556677653 334566788888777665544 4321 1122222 235789999999984 467888
Q ss_pred Cccceee--ccCc-hhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc
Q 042753 353 AVGAFLT--HCGW-NSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 353 ~v~~~It--HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~ 426 (473)
++ +|. .-|. .++.||+++|+|+|+....+ ....+.+. +.|..++ .-+.+++.++|.++++|+
T Consensus 263 d~--~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~-----~~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 263 RA--FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFE-----EQTVESLAAAVERFEKNE 327 (351)
T ss_pred CE--EEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeC-----CCCHHHHHHHHHHHHhCc
Confidence 87 442 3333 46789999999999976433 33344433 5788776 346888999999999885
No 104
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.02 E-value=0.0068 Score=61.91 Aligned_cols=165 Identities=15% Similarity=0.148 Sum_probs=85.9
Q ss_pred CCcEEEEEeCCccc-CCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhc--CCCeEe-ecCccH--
Q 042753 272 DESVVYVCFGSRYV-LTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVA--GRGYVI-RGWSQQ-- 345 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~nv~v-~~~~pq-- 345 (473)
.+..+++..|.... ...+.+.+.+..+.+.+.++++. +... ..+.+.+.+... ..++++ ..+...
T Consensus 294 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~-G~g~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 364 (476)
T cd03791 294 PDAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVIL-GSGD--------PEYEEALRELAARYPGRVAVLIGYDEALA 364 (476)
T ss_pred CCCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEE-ecCC--------HHHHHHHHHHHHhCCCcEEEEEeCCHHHH
Confidence 34456777787753 23344444444444445554443 3321 112122322211 356654 344422
Q ss_pred HHhhhccCccceeec---cCc-hhHHHHHhhCCeEecCcccccchhhHHHHH------HHhcceEEeccCCCCCCCHHHH
Q 042753 346 VAILRHKAVGAFLTH---CGW-NSVLEGVSAGVVMLTWPMDADQYTNAQLLV------DQLGVGIRVGEGTRNIPESDEL 415 (473)
Q Consensus 346 ~~lL~~~~v~~~ItH---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~------~~~G~G~~l~~~~~~~~~~~~l 415 (473)
..+++.+++ ++.- -|+ .+.+||+++|+|+|+....+ ....+. .. |.|..++ ..+.+++
T Consensus 365 ~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg----~~e~v~~~~~~~~~-~~G~~~~-----~~~~~~l 432 (476)
T cd03791 365 HLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGG----LADTVIDYNEDTGE-GTGFVFE-----GYNADAL 432 (476)
T ss_pred HHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCC----ccceEeCCcCCCCC-CCeEEeC-----CCCHHHH
Confidence 246778887 5532 123 47899999999999765432 111222 12 4788877 3468999
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042753 416 ARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRI 461 (473)
Q Consensus 416 ~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 461 (473)
.++|.++++.. .-++...++++... ...-+-+..++++++..
T Consensus 433 ~~~i~~~l~~~-~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~y 474 (476)
T cd03791 433 LAALRRALALY-RDPEAWRKLQRNAM---AQDFSWDRSAKEYLELY 474 (476)
T ss_pred HHHHHHHHHHH-cCHHHHHHHHHHHh---ccCCChHHHHHHHHHHH
Confidence 99999988532 11222233333332 23345566666666544
No 105
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.01 E-value=0.013 Score=59.60 Aligned_cols=168 Identities=15% Similarity=0.156 Sum_probs=88.0
Q ss_pred CcEEEEEeCCccc-CCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhc--CCCeE-eecCccH--H
Q 042753 273 ESVVYVCFGSRYV-LTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVA--GRGYV-IRGWSQQ--V 346 (473)
Q Consensus 273 ~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~nv~-v~~~~pq--~ 346 (473)
+..+++..|.... ...+.+.+.+..+.+.+.+++++ +... ..+.+.+.+... +.++. ...|-.+ .
T Consensus 281 ~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lviv-G~g~--------~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~ 351 (466)
T PRK00654 281 DAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLL-GTGD--------PELEEAFRALAARYPGKVGVQIGYDEALAH 351 (466)
T ss_pred CCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEE-ecCc--------HHHHHHHHHHHHHCCCcEEEEEeCCHHHHH
Confidence 4556777788753 23333333333333346666555 4321 111122322111 23443 3456333 2
Q ss_pred HhhhccCccceeec---cCch-hHHHHHhhCCeEecCcccc--cchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHH
Q 042753 347 AILRHKAVGAFLTH---CGWN-SVLEGVSAGVVMLTWPMDA--DQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLA 420 (473)
Q Consensus 347 ~lL~~~~v~~~ItH---gG~~-s~~eal~~GvP~l~~P~~~--DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~ 420 (473)
.+++.+++ +|.- -|+| +.+||+++|+|.|+....+ |.-.....-.+. +.|..++ .-+.+++.++|.
T Consensus 352 ~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~-----~~d~~~la~~i~ 423 (466)
T PRK00654 352 RIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFD-----DFNAEDLLRALR 423 (466)
T ss_pred HHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeC-----CCCHHHHHHHHH
Confidence 47788887 6542 3444 8899999999998864432 211110000112 5687776 357899999999
Q ss_pred HHhC---CcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 042753 421 QSVD---GPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 421 ~~l~---~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~ 464 (473)
++++ ++ .. .++++.... +..-|-++.++++++...+.
T Consensus 424 ~~l~~~~~~-~~---~~~~~~~~~---~~~fsw~~~a~~~~~lY~~~ 463 (466)
T PRK00654 424 RALELYRQP-PL---WRALQRQAM---AQDFSWDKSAEEYLELYRRL 463 (466)
T ss_pred HHHHHhcCH-HH---HHHHHHHHh---ccCCChHHHHHHHHHHHHHH
Confidence 9886 32 22 222322222 23456677777777665543
No 106
>PLN02949 transferase, transferring glycosyl groups
Probab=98.00 E-value=0.02 Score=57.89 Aligned_cols=115 Identities=20% Similarity=0.196 Sum_probs=67.5
Q ss_pred CCCeEeecCccHHH---hhhccCccceee---ccCch-hHHHHHhhCCeEecCcccccchhhHHHHHHH-hc-ceEEecc
Q 042753 334 GRGYVIRGWSQQVA---ILRHKAVGAFLT---HCGWN-SVLEGVSAGVVMLTWPMDADQYTNAQLLVDQ-LG-VGIRVGE 404 (473)
Q Consensus 334 ~~nv~v~~~~pq~~---lL~~~~v~~~It---HgG~~-s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~-~G-~G~~l~~ 404 (473)
.++|....++|+.+ +|..+++ +|+ +-|+| ++.||+++|+|+|+....+--. ..+.+. .| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCCCcccccC--
Confidence 45788889998654 6777876 552 23334 7999999999999986432100 001100 01 23211
Q ss_pred CCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 042753 405 GTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 405 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~ 464 (473)
-+.+++.++|.+++++++..++ ++++..++.++. -|.+...+++.+.+...
T Consensus 407 -----~~~~~la~ai~~ll~~~~~~r~---~m~~~ar~~~~~-FS~e~~~~~~~~~i~~l 457 (463)
T PLN02949 407 -----TTVEEYADAILEVLRMRETERL---EIAAAARKRANR-FSEQRFNEDFKDAIRPI 457 (463)
T ss_pred -----CCHHHHHHHHHHHHhCCHHHHH---HHHHHHHHHHHH-cCHHHHHHHHHHHHHHH
Confidence 2789999999999985312222 222222222222 55677777777777665
No 107
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.99 E-value=0.0095 Score=59.71 Aligned_cols=80 Identities=14% Similarity=0.066 Sum_probs=53.1
Q ss_pred CCCeEeecCccHHH---hhhccCccceeec----cCchhHHHHHhhCCeEecCcccccchhhHHHHH---HHhcceEEec
Q 042753 334 GRGYVIRGWSQQVA---ILRHKAVGAFLTH----CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLV---DQLGVGIRVG 403 (473)
Q Consensus 334 ~~nv~v~~~~pq~~---lL~~~~v~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~---~~~G~G~~l~ 403 (473)
.++|....++|+.+ +|..+++ +|+- |=.-++.||+++|+|+|+.-..+.-. ..+. .. ..|...+
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~---~iv~~~~~g-~~G~l~~ 377 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLL---DIVVPWDGG-PTGFLAS 377 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCch---heeeccCCC-CceEEeC
Confidence 35788889998754 6777886 4431 22348899999999999864332111 1111 12 4565432
Q ss_pred cCCCCCCCHHHHHHHHHHHhCCc
Q 042753 404 EGTRNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 404 ~~~~~~~~~~~l~~~i~~~l~~~ 426 (473)
+.+++.++|.++++++
T Consensus 378 -------d~~~la~ai~~ll~~~ 393 (419)
T cd03806 378 -------TAEEYAEAIEKILSLS 393 (419)
T ss_pred -------CHHHHHHHHHHHHhCC
Confidence 6899999999999875
No 108
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.00036 Score=55.54 Aligned_cols=127 Identities=14% Similarity=0.236 Sum_probs=79.6
Q ss_pred EEEEeCCcccCCHHHHH--HHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecC--ccH-HHhhh
Q 042753 276 VYVCFGSRYVLTAKQIH--ELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGW--SQQ-VAILR 350 (473)
Q Consensus 276 V~vs~Gs~~~~~~~~~~--~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~--~pq-~~lL~ 350 (473)
+||+-||....-...+. ++.+-.+.-..++|+.++.. +..|- ++..+.+| -+- ..+..
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~---------d~kpv--------agl~v~~F~~~~kiQsli~ 64 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG---------DIKPV--------AGLRVYGFDKEEKIQSLIH 64 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC---------Ccccc--------cccEEEeechHHHHHHHhh
Confidence 78999998431111111 12222333456899999985 33441 23344344 443 34555
Q ss_pred ccCccceeeccCchhHHHHHhhCCeEecCcccc--------cchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHH
Q 042753 351 HKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDA--------DQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQS 422 (473)
Q Consensus 351 ~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~--------DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~ 422 (473)
.+++ +|.|+|.||++.++..++|.+++|... .|-..|..++ ..+.-+..+. .+..-.+.+.....++
T Consensus 65 darI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~sp--te~~L~a~l~~s~~~v 139 (161)
T COG5017 65 DARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVACSP--TELVLQAGLQVSVADV 139 (161)
T ss_pred cceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEEcC--CchhhHHhHhhhhhhh
Confidence 5665 999999999999999999999999754 6888899998 4477666662 2222344444445555
Q ss_pred hC
Q 042753 423 VD 424 (473)
Q Consensus 423 l~ 424 (473)
+.
T Consensus 140 ~~ 141 (161)
T COG5017 140 LH 141 (161)
T ss_pred cC
Confidence 54
No 109
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.86 E-value=0.032 Score=56.90 Aligned_cols=164 Identities=13% Similarity=0.093 Sum_probs=88.7
Q ss_pred CcEEEEEeCCccc-CCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhh--cCCCeEeecCccHH---
Q 042753 273 ESVVYVCFGSRYV-LTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRV--AGRGYVIRGWSQQV--- 346 (473)
Q Consensus 273 ~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~v~~~~pq~--- 346 (473)
+..+++..|.... ...+.+.+.+..+.+.+.++++. +... ....+.+.+.. .+.++.+....+..
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~-G~g~--------~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~ 360 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVL-GTGD--------PELEEALRELAERYPGNVRVIIGYDEALAH 360 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEE-CCCC--------HHHHHHHHHHHHHCCCcEEEEEcCCHHHHH
Confidence 4456677788754 23344444444444445555443 4321 11222232211 13455544444443
Q ss_pred HhhhccCccceeec---cCch-hHHHHHhhCCeEecCcccccchhhHHHHHH-----HhcceEEeccCCCCCCCHHHHHH
Q 042753 347 AILRHKAVGAFLTH---CGWN-SVLEGVSAGVVMLTWPMDADQYTNAQLLVD-----QLGVGIRVGEGTRNIPESDELAR 417 (473)
Q Consensus 347 ~lL~~~~v~~~ItH---gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~rv~~-----~~G~G~~l~~~~~~~~~~~~l~~ 417 (473)
.+++.+++ ++.- -|+| +.+||+++|+|+|+....+ ....+.+ .-+.|..++ .-+.+++.+
T Consensus 361 ~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G~l~~-----~~d~~~la~ 429 (473)
T TIGR02095 361 LIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTGFLFE-----EYDPGALLA 429 (473)
T ss_pred HHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCceEEeC-----CCCHHHHHH
Confidence 47788887 5543 2444 7899999999999865432 1112220 115677776 457889999
Q ss_pred HHHHHhC----CcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 418 LLAQSVD----GPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 418 ~i~~~l~----~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
+|.+++. ++ ... +++++... ..--|-++.++++++..++
T Consensus 430 ~i~~~l~~~~~~~-~~~---~~~~~~~~---~~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 430 ALSRALRLYRQDP-SLW---EALQKNAM---SQDFSWDKSAKQYVELYRS 472 (473)
T ss_pred HHHHHHHHHhcCH-HHH---HHHHHHHh---ccCCCcHHHHHHHHHHHHh
Confidence 9999886 43 322 22322222 2345667777777766543
No 110
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.84 E-value=0.038 Score=54.50 Aligned_cols=109 Identities=12% Similarity=0.061 Sum_probs=66.4
Q ss_pred CCCeEeecCccHHH---hhhccCcccee------eccCc-hhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEec
Q 042753 334 GRGYVIRGWSQQVA---ILRHKAVGAFL------THCGW-NSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVG 403 (473)
Q Consensus 334 ~~nv~v~~~~pq~~---lL~~~~v~~~I------tHgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~ 403 (473)
.+||...+++|+.+ .+.++++..+- +.++. +.+.|++++|+|+|+.++ ...+. . +-|..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~-~-~~~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRR-Y-EDEVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHh-h-cCcEEEe
Confidence 47899999998655 57778873221 22332 458999999999998763 12222 3 2233333
Q ss_pred cCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 404 EGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 404 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
. -+.+++.++|++++.+++..+.+. ... + ...-|-+..++++++.+.+
T Consensus 324 ---~--~d~~~~~~ai~~~l~~~~~~~~~~--~~~-~----~~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 324 ---A--DDPEEFVAAIEKALLEDGPARERR--RLR-L----AAQNSWDARAAEMLEALQE 371 (373)
T ss_pred ---C--CCHHHHHHHHHHHHhcCCchHHHH--HHH-H----HHHCCHHHHHHHHHHHHHh
Confidence 1 279999999999876541211111 111 1 2235667777787776665
No 111
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.83 E-value=0.00036 Score=69.15 Aligned_cols=173 Identities=13% Similarity=0.167 Sum_probs=90.5
Q ss_pred CCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhh-----cCCCeEeecCccH
Q 042753 271 RDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRV-----AGRGYVIRGWSQQ 345 (473)
Q Consensus 271 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~nv~v~~~~pq 345 (473)
++..++|.||.+.....++.+.--.+.|++.+.-.+|....+... .+.+.++. ..+.+++..+.|+
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~---------~~~l~~~~~~~Gv~~~Ri~f~~~~~~ 352 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASG---------EARLRRRFAAHGVDPDRIIFSPVAPR 352 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTH---------HHHHHHHHHHTTS-GGGEEEEE---H
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHH---------HHHHHHHHHHcCCChhhEEEcCCCCH
Confidence 467899999999999999999999999999999899998765310 12222222 2344667777776
Q ss_pred HHhh---hccCcccee---eccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHH
Q 042753 346 VAIL---RHKAVGAFL---THCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLL 419 (473)
Q Consensus 346 ~~lL---~~~~v~~~I---tHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i 419 (473)
.+-| ..+++ ++ ..+|.+|++|||+.|||+|..|--.=.-..+.-+-..+|+.-.+- .+.++-.+..
T Consensus 353 ~ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA------~s~~eYv~~A 424 (468)
T PF13844_consen 353 EEHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIA------DSEEEYVEIA 424 (468)
T ss_dssp HHHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-------SSHHHHHHHH
T ss_pred HHHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcC------CCHHHHHHHH
Confidence 5544 44665 33 458899999999999999999954333333333333667765554 2344444444
Q ss_pred HHHhCCcHHHHHH-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 420 AQSVDGPRRERLK-ARELSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 420 ~~~l~~~~~~~~~-a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
-++-+|. .++++ -+++++...+ .+-......+..+++.+.+
T Consensus 425 v~La~D~-~~l~~lR~~Lr~~~~~--SpLfd~~~~ar~lE~a~~~ 466 (468)
T PF13844_consen 425 VRLATDP-ERLRALRAKLRDRRSK--SPLFDPKRFARNLEAAYRQ 466 (468)
T ss_dssp HHHHH-H-HHHHHHHHHHHHHHHH--SGGG-HHHHHHHHHHHHHH
T ss_pred HHHhCCH-HHHHHHHHHHHHHHhh--CCCCCHHHHHHHHHHHHHH
Confidence 4555665 43322 2233333322 1223345566666666554
No 112
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.67 E-value=0.035 Score=57.60 Aligned_cols=100 Identities=9% Similarity=0.073 Sum_probs=63.1
Q ss_pred eEeecCccHH-HhhhccCccceeec----cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCC
Q 042753 337 YVIRGWSQQV-AILRHKAVGAFLTH----CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPE 411 (473)
Q Consensus 337 v~v~~~~pq~-~lL~~~~v~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~ 411 (473)
+....+.++. ++++.+++ ||.- |=..+++||+++|+|+|+....+... +. . |.+..+. -+
T Consensus 603 V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~-~-g~nGll~------~D 667 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FR-S-FPNCLTY------KT 667 (794)
T ss_pred EEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Ee-e-cCCeEec------CC
Confidence 5555666655 48988887 6653 33668999999999999987654321 22 2 3332332 35
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042753 412 SDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRI 461 (473)
Q Consensus 412 ~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 461 (473)
.+++.++|.++|+++ ..+..+.+ ...-|-+..+++++++-
T Consensus 668 ~EafAeAI~~LLsd~-~~rl~~~a---------~~~~SWeAaadrLle~~ 707 (794)
T PLN02501 668 SEDFVAKVKEALANE-PQPLTPEQ---------RYNLSWEAATQRFMEYS 707 (794)
T ss_pred HHHHHHHHHHHHhCc-hhhhHHHH---------HhhCCHHHHHHHHHHhh
Confidence 899999999999986 43322221 11244566666666654
No 113
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.66 E-value=0.0092 Score=58.69 Aligned_cols=98 Identities=13% Similarity=0.231 Sum_probs=63.9
Q ss_pred CCCeEeecCccHH-HhhhccCccceeec--cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCC
Q 042753 334 GRGYVIRGWSQQV-AILRHKAVGAFLTH--CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIP 410 (473)
Q Consensus 334 ~~nv~v~~~~pq~-~lL~~~~v~~~ItH--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~ 410 (473)
..++.+.++.++. .++..+++-.+.++ |...++.||+++|+|+|+..... .....+.+. ..|..++ .-
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~-----~~ 330 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVP-----KG 330 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeC-----CC
Confidence 3467776666553 47888887333333 34568999999999999864331 123344423 5677776 35
Q ss_pred CHHHHHHHHHHHhCCc---HHHHHHHHHHHHHH
Q 042753 411 ESDELARLLAQSVDGP---RRERLKARELSGAA 440 (473)
Q Consensus 411 ~~~~l~~~i~~~l~~~---~~~~~~a~~~~~~~ 440 (473)
+.+++.++|.++++|+ ..+.+++.+.++.+
T Consensus 331 d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 363 (372)
T cd04949 331 DIEALAEAIIELLNDPKLLQKFSEAAYENAERY 363 (372)
T ss_pred cHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 7999999999999986 34445555444433
No 114
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.64 E-value=0.0013 Score=65.72 Aligned_cols=165 Identities=16% Similarity=0.206 Sum_probs=93.3
Q ss_pred CCcEEEEEeCCcccC-CHHHHHHHHHHHHhC--CCcEEEEEeCCCccCCcccCCCCchhhHHhh----cCCCeEeecCcc
Q 042753 272 DESVVYVCFGSRYVL-TAKQIHELAAALEKT--DVDFVYCVREPDERHASQDCGVLPDGFEDRV----AGRGYVIRGWSQ 344 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~----~~~nv~v~~~~p 344 (473)
+++..+++.|..... ..+.+-+.+..+.+. +.++.|..-+.. ...+.+.+.. ...++...+|++
T Consensus 228 ~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g---------~~~~~l~~~~~~~~~~~~V~f~G~v~ 298 (407)
T cd04946 228 DDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGG---------PLEDTLKELAESKPENISVNFTGELS 298 (407)
T ss_pred CCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCc---------hHHHHHHHHHHhcCCCceEEEecCCC
Confidence 345667778887542 233333333333332 246666654431 1112222221 235688889999
Q ss_pred HHHh---hhccCccceeeccC----chhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHH
Q 042753 345 QVAI---LRHKAVGAFLTHCG----WNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELAR 417 (473)
Q Consensus 345 q~~l---L~~~~v~~~ItHgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ 417 (473)
+.++ +..++..+||..+- .++++||+++|+|+|+... ......+. ..+.|..+. ...+.+++.+
T Consensus 299 ~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i~-~~~~G~l~~----~~~~~~~la~ 369 (407)
T cd04946 299 NSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIVD-NGGNGLLLS----KDPTPNELVS 369 (407)
T ss_pred hHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHhc-CCCcEEEeC----CCCCHHHHHH
Confidence 7654 44433334665443 5689999999999998643 34555565 513787775 2457899999
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 042753 418 LLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFI 458 (473)
Q Consensus 418 ~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~ 458 (473)
+|.++++|+ ..++ ++++..++.+.+.-+.+...++++
T Consensus 370 ~I~~ll~~~-~~~~---~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 370 SLSKFIDNE-EEYQ---TMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HHHHHHhCH-HHHH---HHHHHHHHHHHHHcCHHHhHHHhc
Confidence 999999986 3332 223333322233344555555543
No 115
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.61 E-value=0.023 Score=57.98 Aligned_cols=86 Identities=21% Similarity=0.264 Sum_probs=61.0
Q ss_pred CCCeEeecCccHHHhhhccCccceeec----cCchhHHHHHhhCCeEecCcccccchhhHHHHHHH----hc-ceEEecc
Q 042753 334 GRGYVIRGWSQQVAILRHKAVGAFLTH----CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQ----LG-VGIRVGE 404 (473)
Q Consensus 334 ~~nv~v~~~~pq~~lL~~~~v~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~----~G-~G~~l~~ 404 (473)
.++|.+.+...-.++++.+++ +|.- |--++++||+++|+|+|+. |.......+.+. +| .|..++
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~- 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVP- 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEEC-
Confidence 367777776666778888887 4433 3456899999999999985 444444555421 11 677776
Q ss_pred CCCCCCCHHHHHHHHHHHhCCcHHHHH
Q 042753 405 GTRNIPESDELARLLAQSVDGPRRERL 431 (473)
Q Consensus 405 ~~~~~~~~~~l~~~i~~~l~~~~~~~~ 431 (473)
..+.+++.++|.++++|+ ..++
T Consensus 426 ----~~d~~~la~ai~~ll~~~-~~~~ 447 (475)
T cd03813 426 ----PADPEALARAILRLLKDP-ELRR 447 (475)
T ss_pred ----CCCHHHHHHHHHHHhcCH-HHHH
Confidence 457899999999999987 4433
No 116
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.51 E-value=0.038 Score=56.55 Aligned_cols=164 Identities=12% Similarity=0.113 Sum_probs=94.9
Q ss_pred CcEEEEEeCCcccCCHHHHHHHHHHHHh----CCCcEEEEEeCCCccCCcccCCCCchhhHHhh----cCCCeEeecCcc
Q 042753 273 ESVVYVCFGSRYVLTAKQIHELAAALEK----TDVDFVYCVREPDERHASQDCGVLPDGFEDRV----AGRGYVIRGWSQ 344 (473)
Q Consensus 273 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~----~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~----~~~nv~v~~~~p 344 (473)
++.++++.|.... ...+..+++|+.. .+.--+..++... ..+.+.+.. ..++|...++.+
T Consensus 318 ~~~~il~vGrl~~--~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~----------~~~~l~~~i~~~~l~~~V~f~G~~~ 385 (500)
T TIGR02918 318 KPFSIITASRLAK--EKHIDWLVKAVVKAKKSVPELTFDIYGEGG----------EKQKLQKIINENQAQDYIHLKGHRN 385 (500)
T ss_pred CCeEEEEEecccc--ccCHHHHHHHHHHHHhhCCCeEEEEEECch----------hHHHHHHHHHHcCCCCeEEEcCCCC
Confidence 4456677788753 2334445555542 2222233455532 112333222 235677788888
Q ss_pred HHHhhhccCccceee---ccC-chhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCC----HHHHH
Q 042753 345 QVAILRHKAVGAFLT---HCG-WNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPE----SDELA 416 (473)
Q Consensus 345 q~~lL~~~~v~~~It---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~----~~~l~ 416 (473)
..+++..+++ +|. .-| ..+++||+++|+|+|+....+ .....+. .-.-|..+..+ .+.-+ .++++
T Consensus 386 ~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~-~g~nG~lv~~~-~~~~d~~~~~~~la 458 (500)
T TIGR02918 386 LSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIE-DNKNGYLIPID-EEEDDEDQIITALA 458 (500)
T ss_pred HHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHcc-CCCCEEEEeCC-ccccchhHHHHHHH
Confidence 8889999997 664 233 468999999999999975421 2333444 31357766510 11122 78899
Q ss_pred HHHHHHhCCc--HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 417 RLLAQSVDGP--RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 417 ~~i~~~l~~~--~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
++|.++++++ ..|.+++.+.++. -|.+..++++.+.+.+
T Consensus 459 ~~I~~ll~~~~~~~~~~~a~~~a~~--------fs~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 459 EKIVEYFNSNDIDAFHEYSYQIAEG--------FLTANIIEKWKKLVRE 499 (500)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHhh
Confidence 9999999543 3444455444333 4466777777776654
No 117
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.49 E-value=0.0015 Score=56.41 Aligned_cols=143 Identities=17% Similarity=0.177 Sum_probs=85.3
Q ss_pred CCCcEEEEEeCCccc-CCHHHHHHHHHHHHh--CCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccH--
Q 042753 271 RDESVVYVCFGSRYV-LTAKQIHELAAALEK--TDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQ-- 345 (473)
Q Consensus 271 ~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq-- 345 (473)
..++.+++..|+... -..+.+-.++.-+.+ .+.-.++.++... . ...+-..........++.+..++++
T Consensus 12 ~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~----~--~~~~~~~~~~~~~~~~i~~~~~~~~~~ 85 (172)
T PF00534_consen 12 PDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGE----Y--KKELKNLIEKLNLKENIIFLGYVPDDE 85 (172)
T ss_dssp -TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCC----H--HHHHHHHHHHTTCGTTEEEEESHSHHH
T ss_pred CCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcccc----c--ccccccccccccccccccccccccccc
Confidence 466778888888754 334444444444332 2333444555221 0 0001111111112357888899873
Q ss_pred -HHhhhccCccceeec----cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHH
Q 042753 346 -VAILRHKAVGAFLTH----CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLA 420 (473)
Q Consensus 346 -~~lL~~~~v~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~ 420 (473)
..++..+++ +|+. |...++.||+++|+|+|+. |...+...+.+. +.|..++ .. +.+++.++|.
T Consensus 86 l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~---~~--~~~~l~~~i~ 153 (172)
T PF00534_consen 86 LDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFD---PN--DIEELADAIE 153 (172)
T ss_dssp HHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEES---TT--SHHHHHHHHH
T ss_pred ccccccccee--ccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeC---CC--CHHHHHHHHH
Confidence 447788887 6665 5677999999999999974 455555666533 5688887 33 9999999999
Q ss_pred HHhCCcHHHHHH
Q 042753 421 QSVDGPRRERLK 432 (473)
Q Consensus 421 ~~l~~~~~~~~~ 432 (473)
++++++ ++++.
T Consensus 154 ~~l~~~-~~~~~ 164 (172)
T PF00534_consen 154 KLLNDP-ELRQK 164 (172)
T ss_dssp HHHHHH-HHHHH
T ss_pred HHHCCH-HHHHH
Confidence 999986 44433
No 118
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.46 E-value=0.039 Score=55.01 Aligned_cols=114 Identities=16% Similarity=0.120 Sum_probs=65.2
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHhCCCcE-EEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCcc-H---HHhhh
Q 042753 276 VYVCFGSRYVLTAKQIHELAAALEKTDVDF-VYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQ-Q---VAILR 350 (473)
Q Consensus 276 V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~p-q---~~lL~ 350 (473)
++...|............+++++...+..+ ++.++... ... ..++....+.. + .++++
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~--------~~~---------~~~v~~~g~~~~~~~l~~~y~ 305 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFS--------PFT---------AGNVVNHGFETDKRKLMSALN 305 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCC--------ccc---------ccceEEecCcCCHHHHHHHHH
Confidence 334445432222233466888888764433 44555431 111 13455445542 2 34566
Q ss_pred ccCccceeec----cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHH
Q 042753 351 HKAVGAFLTH----CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLL 419 (473)
Q Consensus 351 ~~~v~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i 419 (473)
.+++ ||.- |--.+++||+++|+|+|+....+ ....+. . +-|..++ . -+.++|.+++
T Consensus 306 ~aDv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv~-~-~~G~lv~---~--~d~~~La~~~ 365 (405)
T PRK10125 306 QMDA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVLQ-K-SGGKTVS---E--EEVLQLAQLS 365 (405)
T ss_pred hCCE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhEe-C-CcEEEEC---C--CCHHHHHhcc
Confidence 6786 6653 34568999999999999987754 222333 4 5688887 2 3677777654
No 119
>PLN02316 synthase/transferase
Probab=97.43 E-value=0.29 Score=53.71 Aligned_cols=107 Identities=9% Similarity=0.008 Sum_probs=63.0
Q ss_pred HhhhccCccceeec----cCchhHHHHHhhCCeEecCcccc--cchhhH------HHHHHHhcceEEeccCCCCCCCHHH
Q 042753 347 AILRHKAVGAFLTH----CGWNSVLEGVSAGVVMLTWPMDA--DQYTNA------QLLVDQLGVGIRVGEGTRNIPESDE 414 (473)
Q Consensus 347 ~lL~~~~v~~~ItH----gG~~s~~eal~~GvP~l~~P~~~--DQ~~na------~rv~~~~G~G~~l~~~~~~~~~~~~ 414 (473)
.+++.+++ |+.- +=..+.+||+++|+|.|+....+ |.-... ......-+-|...+ ..+++.
T Consensus 915 ~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~-----~~d~~a 987 (1036)
T PLN02316 915 LIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFD-----GADAAG 987 (1036)
T ss_pred HHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeC-----CCCHHH
Confidence 57888887 7643 33458999999999888754432 211110 00000013576666 567899
Q ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 415 LARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 415 l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
|..+|.+++.. |......+++..+..+...-|-+..+++.++...+
T Consensus 988 La~AL~raL~~---~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~ 1033 (1036)
T PLN02316 988 VDYALNRAISA---WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHS 1033 (1036)
T ss_pred HHHHHHHHHhh---hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 99999999964 22333334444444434445566666666665554
No 120
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.42 E-value=0.016 Score=57.36 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=75.5
Q ss_pred CCeEeecCccHHH---hhhccCccceeec----cCc-hhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCC
Q 042753 335 RGYVIRGWSQQVA---ILRHKAVGAFLTH----CGW-NSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGT 406 (473)
Q Consensus 335 ~nv~v~~~~pq~~---lL~~~~v~~~ItH----gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 406 (473)
.++...+++|+.+ +++.+++ +|.. .|. .+++||+++|+|+|+.... .+...+.+. ..|..+.
T Consensus 257 ~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~--- 326 (380)
T PRK15484 257 DRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLA--- 326 (380)
T ss_pred CcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEe---
Confidence 5677889998654 5888997 5543 332 5788999999999997653 344445523 4676553
Q ss_pred CCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 407 RNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 407 ~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
...+.+++.++|.++++|+ ..++ +++..++.+...-+-+..++++++.++.
T Consensus 327 -~~~d~~~la~~I~~ll~d~-~~~~----~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 327 -EPMTSDSIISDINRTLADP-ELTQ----IAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred -CCCCHHHHHHHHHHHHcCH-HHHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 2357999999999999987 5433 3333332223445677777788877764
No 121
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.14 E-value=0.03 Score=53.86 Aligned_cols=105 Identities=12% Similarity=0.130 Sum_probs=66.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhhhhhhccCCCCCCee-EEEcCCCCCCCCCChhhHHHHH
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPLLDSLNANHPSTSLQ-SLVLPQPKWPAGSPATRLLKFM 83 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~-f~~l~~~~~~~~~~~~~~~~~~ 83 (473)
|||++-....|++.-+.++.++|+++ +.+|++++.+.+.+.++.. +.++ +..++..... .. .+.
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~------p~vd~v~~~~~~~~~-----~~--~~~ 67 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLH------PAVDEVIPVALRRWR-----KT--LFS 67 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcC------CCccEEEEechhhhh-----hc--ccc
Confidence 68889999999999999999999997 9999999999887777654 3453 4444421100 00 000
Q ss_pred HHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCC
Q 042753 84 RVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLP 127 (473)
Q Consensus 84 ~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP 127 (473)
.... .....+.+.++.. ++|++|.-........++...+.+
T Consensus 68 ~~~~-~~~~~~~~~lr~~--~yD~vi~~~~~~~s~~l~~~~~~~ 108 (319)
T TIGR02193 68 AATW-REIKALRALLRAE--RYDAVIDAQGLIKSALVARMARGP 108 (319)
T ss_pred chhH-HHHHHHHHHHhhc--cchhhhhhhhhHHHHHHHHhhCCc
Confidence 0001 1123444556777 999998544333445566666644
No 122
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.00 E-value=0.0052 Score=59.56 Aligned_cols=109 Identities=18% Similarity=0.356 Sum_probs=75.6
Q ss_pred CCCeEeecCccHHHhhhc--cCccceeecc--------Cc------hhHHHHHhhCCeEecCcccccchhhHHHHHHHhc
Q 042753 334 GRGYVIRGWSQQVAILRH--KAVGAFLTHC--------GW------NSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLG 397 (473)
Q Consensus 334 ~~nv~v~~~~pq~~lL~~--~~v~~~ItHg--------G~------~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G 397 (473)
.+|+...+|+|+.++..+ .+.+ +|.-+ .+ +-+.+.+++|+|+|+. ++...+..|++. +
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~~~g-Lv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~-~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSKGFG-LVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN-G 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhcCcC-eEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-C
Confidence 368888899998776432 1442 33221 11 1267789999999985 456788888855 9
Q ss_pred ceEEeccCCCCCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 042753 398 VGIRVGEGTRNIPESDELARLLAQSVDGP-RRERLKARELSGAALSAVVKGGSSDRDLNDFIK 459 (473)
Q Consensus 398 ~G~~l~~~~~~~~~~~~l~~~i~~~l~~~-~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~ 459 (473)
+|+.++ +.+++.++++++..+. ..|++++++++++++ .|.-..+++++++.
T Consensus 280 ~G~~v~-------~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~----~g~~~~~~~~~~~~ 331 (333)
T PRK09814 280 LGFVVD-------SLEELPEIIDNITEEEYQEMVENVKKISKLLR----NGYFTKKALVDAIK 331 (333)
T ss_pred ceEEeC-------CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHh
Confidence 999886 4678999998865433 578999999999994 56555555555543
No 123
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.99 E-value=0.43 Score=48.79 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=65.5
Q ss_pred CCCeEeecCccH-HHhhhccCccceeec---cC-chhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCC
Q 042753 334 GRGYVIRGWSQQ-VAILRHKAVGAFLTH---CG-WNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRN 408 (473)
Q Consensus 334 ~~nv~v~~~~pq-~~lL~~~~v~~~ItH---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 408 (473)
.++|.+.+|..+ ..+|..+++ ||.. -| .+++.||+++|+|+|+... ..+...+.+. ..|..++ ..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp---~~ 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILD---DA 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEEC---CC
Confidence 367888888654 347888997 7653 34 5699999999999998754 3455555533 5687777 32
Q ss_pred CCCHHHHHHHH---HHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 042753 409 IPESDELARLL---AQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRIN 462 (473)
Q Consensus 409 ~~~~~~l~~~i---~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~ 462 (473)
+.+.+.+++ .++.... +....+++..++.+...-|.+..+++.++-+.
T Consensus 524 --D~~aLa~ai~lA~aL~~ll----~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~ 574 (578)
T PRK15490 524 --QTVNLDQACRYAEKLVNLW----RSRTGICQQTQSFLQERFTVEHMVGTFVKTIA 574 (578)
T ss_pred --ChhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 344454444 2222221 11112333333333344566666666666543
No 124
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.94 E-value=0.0037 Score=51.54 Aligned_cols=127 Identities=17% Similarity=0.228 Sum_probs=66.6
Q ss_pred EEEEEeCCccc-CCHHHHHH-HHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccH-HHhhhc
Q 042753 275 VVYVCFGSRYV-LTAKQIHE-LAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQ-VAILRH 351 (473)
Q Consensus 275 ~V~vs~Gs~~~-~~~~~~~~-~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq-~~lL~~ 351 (473)
+.++++|+... ...+.+.+ ++..+.+...++-+.+-+.. |+.+.+. ..+|+...+|++. .++++.
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~-----------~~~l~~~-~~~~v~~~g~~~e~~~~l~~ 70 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNG-----------PDELKRL-RRPNVRFHGFVEELPEILAA 70 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECES-----------S-HHCCH-HHCTEEEE-S-HHHHHHHHC
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCC-----------HHHHHHh-cCCCEEEcCCHHHHHHHHHh
Confidence 45566666653 34444444 66666543233333333221 1122222 2358898899864 347888
Q ss_pred cCccceeec---cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCC
Q 042753 352 KAVGAFLTH---CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDG 425 (473)
Q Consensus 352 ~~v~~~ItH---gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~ 425 (473)
+++....+. |-.+++.|++++|+|+|+.+.. ....++ ..+.|..+. -+.+++.++|.++++|
T Consensus 71 ~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~-~~~~~~~~~------~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 71 ADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVE-EDGCGVLVA------NDPEELAEAIERLLND 135 (135)
T ss_dssp -SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE-T------T-HHHHHHHHHHHHH-
T ss_pred CCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhhee-ecCCeEEEC------CCHHHHHHHHHHHhcC
Confidence 998544332 2348999999999999998761 222233 237776664 3899999999999875
No 125
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.88 E-value=0.11 Score=48.09 Aligned_cols=102 Identities=18% Similarity=0.180 Sum_probs=70.3
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEeCCCC--hhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHH-HHHHHHHHHhh
Q 042753 15 TSGHIIPLLDLTNRLLTLGLNVTVLITQNN--LPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLL-KFMRVLRELHY 91 (473)
Q Consensus 15 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~--~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ 91 (473)
-.-|+.-+..+.++|.++||+|.+.+-... .+.++.+ |+.+..+.-. +. ..+. .+.... ...
T Consensus 9 n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y-------gf~~~~Igk~---g~---~tl~~Kl~~~~--eR~ 73 (346)
T COG1817 9 NPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY-------GFPYKSIGKH---GG---VTLKEKLLESA--ERV 73 (346)
T ss_pred CcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh-------CCCeEeeccc---CC---ccHHHHHHHHH--HHH
Confidence 345788899999999999999988887532 3444544 6766665421 10 1111 121111 223
Q ss_pred HHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecc
Q 042753 92 PALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 92 ~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~ 134 (473)
-.|.+++.+. +||+.+. ...+....+|--+|+|.|.+.-.
T Consensus 74 ~~L~ki~~~~--kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ 113 (346)
T COG1817 74 YKLSKIIAEF--KPDVAIG-KHSPELPRVAFGLGIPSIIFVDN 113 (346)
T ss_pred HHHHHHHhhc--CCceEee-cCCcchhhHHhhcCCceEEecCC
Confidence 4678899999 9999999 56678999999999999998544
No 126
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.84 E-value=0.012 Score=48.75 Aligned_cols=102 Identities=17% Similarity=0.235 Sum_probs=66.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHH
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVL 86 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~ 86 (473)
|||++.-....| ...+++.|.++||+|++++........... .++.+..++.+. ... ..+ .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~------~~i~~~~~~~~~------k~~-~~~---~ 61 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEII------EGIKVIRLPSPR------KSP-LNY---I 61 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHh------CCeEEEEecCCC------Ccc-HHH---H
Confidence 577777555555 567899999999999999996554332222 367787775321 011 111 1
Q ss_pred HHHhhHHHHHHHhcCCCCCcEEEeCCCcc---hHHHHHHHhC-CCcEEEe
Q 042753 87 RELHYPALLDWFKSHPSPPVAILSDFFLG---WTQGLAAELG-LPRVVFS 132 (473)
Q Consensus 87 ~~~~~~~l~~~l~~~~~~pD~VV~D~~~~---~~~~~A~~~g-iP~v~~~ 132 (473)
. . -.+.+++++. +||+|.+-.... .+..++...+ +|+|...
T Consensus 62 ~--~-~~l~k~ik~~--~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~ 106 (139)
T PF13477_consen 62 K--Y-FRLRKIIKKE--KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTV 106 (139)
T ss_pred H--H-HHHHHHhccC--CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEe
Confidence 1 1 2678899999 999998777654 2334567778 8988643
No 127
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.83 E-value=0.053 Score=54.04 Aligned_cols=182 Identities=13% Similarity=0.131 Sum_probs=104.2
Q ss_pred hHHHhcCCCCCcEEEEEeCCcccC------C----HHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCC--CCchhhHH
Q 042753 263 VLTWLDSRRDESVVYVCFGSRYVL------T----AKQIHELAAALEKTDVDFVYCVREPDERHASQDCG--VLPDGFED 330 (473)
Q Consensus 263 ~~~~l~~~~~~~~V~vs~Gs~~~~------~----~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~--~lp~~~~~ 330 (473)
+..|+.....+++|.||.-..... . ...+.++++.|.+.++++++..-....+ ....+ .+-..+.+
T Consensus 224 ~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~--~~~~dD~~~~~~l~~ 301 (426)
T PRK10017 224 VQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGID--SYNKDDRMVALNLRQ 301 (426)
T ss_pred hhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCcc--CCCCchHHHHHHHHH
Confidence 344554434567888886654311 1 2334456666656688877665431100 00001 01123444
Q ss_pred hhcCC-C--eEeecCccH--HHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEE-ecc
Q 042753 331 RVAGR-G--YVIRGWSQQ--VAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIR-VGE 404 (473)
Q Consensus 331 ~~~~~-n--v~v~~~~pq--~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~-l~~ 404 (473)
++..+ + ++..++-|. ..+++++++ +|. .=+=+..-|+..|||.+.+++ | +.....+. .+|..-. .+
T Consensus 302 ~~~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig-~RlHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~-~lg~~~~~~~- 373 (426)
T PRK10017 302 HVSDPARYHVVMDELNDLEMGKILGACEL--TVG-TRLHSAIISMNFGTPAIAINY--E-HKSAGIMQ-QLGLPEMAID- 373 (426)
T ss_pred hcccccceeEecCCCChHHHHHHHhhCCE--EEE-ecchHHHHHHHcCCCEEEeee--h-HHHHHHHH-HcCCccEEec-
Confidence 44322 2 223233343 368888885 553 223357778899999999987 3 44444455 6688766 56
Q ss_pred CCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 042753 405 GTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRIN 462 (473)
Q Consensus 405 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~ 462 (473)
...++.++|.+.++++++|.+.+++..++--+.+++. ..+.+.++++.+.
T Consensus 374 --~~~l~~~~Li~~v~~~~~~r~~~~~~l~~~v~~~r~~------~~~~~~~~~~~~~ 423 (426)
T PRK10017 374 --IRHLLDGSLQAMVADTLGQLPALNARLAEAVSRERQT------GMQMVQSVLERIG 423 (426)
T ss_pred --hhhCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhc
Confidence 7889999999999999998756666665555555421 3344455555443
No 128
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.79 E-value=0.27 Score=43.85 Aligned_cols=69 Identities=26% Similarity=0.273 Sum_probs=50.3
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhHHH
Q 042753 15 TSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPAL 94 (473)
Q Consensus 15 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (473)
..|+-.....+++.|.++||+|+++. .....+
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~------------------------------------------------~~~~~~ 43 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA------------------------------------------------LLLLLL 43 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE------------------------------------------------echHHH
Confidence 66999999999999999999999998 001112
Q ss_pred HHHHhcCCCCCcEEEeCCCcchHH---HHHHHhCCCcEEEec
Q 042753 95 LDWFKSHPSPPVAILSDFFLGWTQ---GLAAELGLPRVVFSP 133 (473)
Q Consensus 95 ~~~l~~~~~~pD~VV~D~~~~~~~---~~A~~~giP~v~~~~ 133 (473)
...+.+. +||+|++........ ..+...++|++....
T Consensus 44 ~~~~~~~--~~D~i~~~~~~~~~~~~~~~~~~~~~~~i~~~h 83 (229)
T cd01635 44 LRILRGF--KPDVVHAHGYYPAPLALLLAARLLGIPLVLTVH 83 (229)
T ss_pred HHHHhhc--CCCEEEEcCCCcHHHHHHHHHhhCCCCEEEEEc
Confidence 2334456 899999887766433 457778999877533
No 129
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.67 E-value=0.13 Score=50.21 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=73.5
Q ss_pred CCCCccEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhhhhhhccCCCCCCee-EEEcCCCCCCCCCChh
Q 042753 1 MLPAGAHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPLLDSLNANHPSTSLQ-SLVLPQPKWPAGSPAT 77 (473)
Q Consensus 1 ~~~~~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~-f~~l~~~~~~~~~~~~ 77 (473)
|...++|||++-....|++.-+.++.+.|.++ +.+|++++.+.+.+.++.. +.++ ++.++.. . ..
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~------P~id~vi~~~~~--~----~~ 68 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN------PEINALYGIKNK--K----AG 68 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC------CCceEEEEeccc--c----cc
Confidence 66778999999999999999999999999997 9999999999887766644 3443 2223310 0 00
Q ss_pred hHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEE
Q 042753 78 RLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVV 130 (473)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~ 130 (473)
....+ . . .-.+.+.++.. ++|++|.=........++...|.|...
T Consensus 69 ~~~~~----~-~-~~~l~~~lr~~--~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 69 ASEKI----K-N-FFSLIKVLRAN--KYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred HHHHH----H-H-HHHHHHHHhhC--CCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 00011 1 0 11233456667 999999655444455667777877655
No 130
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.52 E-value=0.0037 Score=47.98 Aligned_cols=55 Identities=22% Similarity=0.291 Sum_probs=45.8
Q ss_pred ChhhhHHHhcCCCCCcEEEEEeCCcccC---CH--HHHHHHHHHHHhCCCcEEEEEeCCC
Q 042753 259 PAHDVLTWLDSRRDESVVYVCFGSRYVL---TA--KQIHELAAALEKTDVDFVYCVREPD 313 (473)
Q Consensus 259 ~~~~~~~~l~~~~~~~~V~vs~Gs~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~~ 313 (473)
.+..+..|+...+++|.|+||+||.... .. ..+..++++++..+..+|..+....
T Consensus 26 G~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~ 85 (97)
T PF06722_consen 26 GPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQ 85 (97)
T ss_dssp SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCC
T ss_pred CCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHH
Confidence 3456677998888999999999999653 22 4788999999999999999999864
No 131
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.32 E-value=0.62 Score=45.29 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=70.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhhhhhhccCCCCCCee-EEEcCCCCCCCCCChhhHHHHH
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPLLDSLNANHPSTSLQ-SLVLPQPKWPAGSPATRLLKFM 83 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~-f~~l~~~~~~~~~~~~~~~~~~ 83 (473)
|||++-..+.|++.-+.++.+.|.++ +.+|++++.+.+.+.++.. +.++ ++.++... . . .....+.
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~------p~vd~vi~~~~~~--~-~--~~~~~~~ 69 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN------PDINALYGLDRKK--A-K--AGERKLA 69 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC------CCccEEEEeChhh--h-c--chHHHHH
Confidence 68999999999999999999999996 8999999999887776654 3453 33333110 0 0 0001111
Q ss_pred HHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEE
Q 042753 84 RVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVV 130 (473)
Q Consensus 84 ~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~ 130 (473)
. . -.+...++.. ++|++|.=.....+..++...|+|.-.
T Consensus 70 ~-----~-~~l~~~lr~~--~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 70 N-----Q-FHLIKVLRAN--RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred H-----H-HHHHHHHHhC--CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 1 1 1233446667 999999655445567788888988655
No 132
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.28 E-value=0.0089 Score=50.41 Aligned_cols=95 Identities=24% Similarity=0.288 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhHHHHHHH--
Q 042753 21 PLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPALLDWF-- 98 (473)
Q Consensus 21 p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-- 98 (473)
-+..|+++|.++||+|++++.......-+.. ..++.+..++.+.... ......+ ...+.+++
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~l~~ 69 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEE-----EDGVRVHRLPLPRRPW---PLRLLRF--------LRRLRRLLAA 69 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEE-----ETTEEEEEE--S-SSS---GGGHCCH--------HHHHHHHCHH
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccc-----cCCceEEeccCCccch---hhhhHHH--------HHHHHHHHhh
Confidence 4678999999999999999986554422111 1367777777543211 0000011 13334445
Q ss_pred hcCCCCCcEEEeCCCcc-hHHHHHH-HhCCCcEEEec
Q 042753 99 KSHPSPPVAILSDFFLG-WTQGLAA-ELGLPRVVFSP 133 (473)
Q Consensus 99 ~~~~~~pD~VV~D~~~~-~~~~~A~-~~giP~v~~~~ 133 (473)
+.. +||+|.+..... ....+++ ..++|+|....
T Consensus 70 ~~~--~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 70 RRE--RPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp CT-----SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred hcc--CCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 566 999999887433 2334445 78999988543
No 133
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.18 E-value=1.2 Score=43.22 Aligned_cols=105 Identities=22% Similarity=0.227 Sum_probs=73.3
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKF 82 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 82 (473)
|+||+++-....|++.-.+++.+.|+++ +.++++++...+.+.++.. +.++-+..-... ... ..+
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~------p~I~~vi~~~~~------~~~-~~~ 67 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN------PEIDKVIIIDKK------KKG-LGL 67 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC------hHhhhhcccccc------ccc-cch
Confidence 6899999999999999999999999998 6999999999887666644 233222110000 000 001
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEE
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVV 130 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~ 130 (473)
.-...+.+.++.. ++|+||.=.-..-...++...++|.-.
T Consensus 68 ------~~~~~l~~~lr~~--~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 68 ------KERLALLRTLRKE--RYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred ------HHHHHHHHHhhcc--CCCEEEECcccHHHHHHHHHhCCCccc
Confidence 1223455667777 899999877777777778788888755
No 134
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=95.99 E-value=1.7 Score=42.33 Aligned_cols=103 Identities=15% Similarity=0.026 Sum_probs=70.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhhhhhhccCCCCCCeeEE-EcCCCCCCCCCChhhHHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPLLDSLNANHPSTSLQSL-VLPQPKWPAGSPATRLLKF 82 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~-~l~~~~~~~~~~~~~~~~~ 82 (473)
+|||++-..+.|++.-..++.+.|+++ +.+|++++.+.+.+.++.. +.++-+ .++.. .....+
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~------P~vd~vi~~~~~--------~~~~~~ 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM------PEVNEAIPMPLG--------HGALEI 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC------CccCEEEecccc--------cchhhh
Confidence 489999999999999999999999996 9999999998887777655 445432 22210 000011
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEE
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVV 130 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~ 130 (473)
. ....+.+.++.. ++|++|.=........++...|+|.-.
T Consensus 67 ~------~~~~l~~~lr~~--~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 G------ERRRLGHSLREK--RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred H------HHHHHHHHHHhc--CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0 012334557777 999999765445566777777887654
No 135
>PHA01633 putative glycosyl transferase group 1
Probab=95.94 E-value=0.48 Score=45.59 Aligned_cols=85 Identities=13% Similarity=0.082 Sum_probs=54.0
Q ss_pred CCCeEee---cCccHH---HhhhccCccceeec----cCchhHHHHHhhCCeEecCcc------cccc------hhhHHH
Q 042753 334 GRGYVIR---GWSQQV---AILRHKAVGAFLTH----CGWNSVLEGVSAGVVMLTWPM------DADQ------YTNAQL 391 (473)
Q Consensus 334 ~~nv~v~---~~~pq~---~lL~~~~v~~~ItH----gG~~s~~eal~~GvP~l~~P~------~~DQ------~~na~r 391 (473)
..++... +++++. ++++.+++ ||.- |=..+++||+++|+|+|+--. .+|+ .++..-
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 3567665 455554 56788887 6653 335578999999999998633 2232 222222
Q ss_pred HHH-HhcceEEeccCCCCCCCHHHHHHHHHHHhCC
Q 042753 392 LVD-QLGVGIRVGEGTRNIPESDELARLLAQSVDG 425 (473)
Q Consensus 392 v~~-~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~ 425 (473)
..+ ..|.|..++ ..+++++.++|.+++..
T Consensus 278 ~~~~~~g~g~~~~-----~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 278 YYDKEHGQKWKIH-----KFQIEDMANAIILAFEL 307 (335)
T ss_pred hcCcccCceeeec-----CCCHHHHHHHHHHHHhc
Confidence 221 125665554 68999999999999543
No 136
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.085 Score=52.89 Aligned_cols=133 Identities=14% Similarity=0.199 Sum_probs=90.0
Q ss_pred CCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhc-----CCCeEeecCccH
Q 042753 271 RDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVA-----GRGYVIRGWSQQ 345 (473)
Q Consensus 271 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~-----~~nv~v~~~~pq 345 (473)
++..+||+||+..+...++.+..-++-|+..+--++|...++. + +.+-+.+++... ...+++.+-.|.
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~----~---~~~~~~l~~la~~~Gv~~eRL~f~p~~~~ 499 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGD----D---AEINARLRDLAEREGVDSERLRFLPPAPN 499 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCC----c---HHHHHHHHHHHHHcCCChhheeecCCCCC
Confidence 4678999999999999999999999999999999999998842 1 223233333322 334566666665
Q ss_pred HH---hhhccCcccee---eccCchhHHHHHhhCCeEecCcccccchh--hHHHHHHHhcceEEeccCCCCCCCHHHHHH
Q 042753 346 VA---ILRHKAVGAFL---THCGWNSVLEGVSAGVVMLTWPMDADQYT--NAQLLVDQLGVGIRVGEGTRNIPESDELAR 417 (473)
Q Consensus 346 ~~---lL~~~~v~~~I---tHgG~~s~~eal~~GvP~l~~P~~~DQ~~--na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ 417 (473)
.+ =+..+++ |+ -=||..|+.|+|+.|||+|..+ ++|+. |+.-+...+|+-..+- .-.++-+.+
T Consensus 500 ~~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA-----~s~~dYV~~ 570 (620)
T COG3914 500 EDHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVA-----DSRADYVEK 570 (620)
T ss_pred HHHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhc-----CCHHHHHHH
Confidence 43 3334564 54 3599999999999999999986 77763 4444543444433333 334556666
Q ss_pred HH
Q 042753 418 LL 419 (473)
Q Consensus 418 ~i 419 (473)
++
T Consensus 571 av 572 (620)
T COG3914 571 AV 572 (620)
T ss_pred HH
Confidence 65
No 137
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.61 E-value=0.17 Score=51.15 Aligned_cols=123 Identities=19% Similarity=0.291 Sum_probs=82.0
Q ss_pred CCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHH---h--hcCCCeEeecCccH
Q 042753 271 RDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFED---R--VAGRGYVIRGWSQQ 345 (473)
Q Consensus 271 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~---~--~~~~nv~v~~~~pq 345 (473)
++..+||++|--....+++.++.-..-|++-+.-++|..+.+.++ + ..|.. + +.++.++..+-++-
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~g------e---~rf~ty~~~~Gl~p~riifs~va~k 826 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVG------E---QRFRTYAEQLGLEPDRIIFSPVAAK 826 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccc------h---HHHHHHHHHhCCCccceeeccccch
Confidence 357799999999888999999999999999999999999987532 1 12211 1 11334554444443
Q ss_pred HH-----hhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEec
Q 042753 346 VA-----ILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVG 403 (473)
Q Consensus 346 ~~-----lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~ 403 (473)
.+ .|..-.+.-+.+. |..|.++.|+.|||||.+|...---..|.-.--.+|+|..+.
T Consensus 827 ~eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hlia 888 (966)
T KOG4626|consen 827 EEHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIA 888 (966)
T ss_pred HHHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHh
Confidence 33 2222223334444 678899999999999999976544444443333668887665
No 138
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.42 E-value=0.14 Score=38.88 Aligned_cols=83 Identities=14% Similarity=0.194 Sum_probs=53.3
Q ss_pred ccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Q 042753 360 HCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGA 439 (473)
Q Consensus 360 HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~ 439 (473)
+|-..-+.|++++|+|+|+-+. ......+. . |.....- + +.+++.++|+.+++|++..++-+++-.+.
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~-~-~~~~~~~----~--~~~el~~~i~~ll~~~~~~~~ia~~a~~~ 76 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFE-D-GEHIITY----N--DPEELAEKIEYLLENPEERRRIAKNARER 76 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcC-C-CCeEEEE----C--CHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 5556689999999999999864 33333332 3 4222222 2 89999999999999983333333333344
Q ss_pred HHHHHhcCCChHHHHHHHH
Q 042753 440 ALSAVVKGGSSDRDLNDFI 458 (473)
Q Consensus 440 ~~~~~~~~gs~~~~~~~~~ 458 (473)
+ ...-+.+..+++++
T Consensus 77 v----~~~~t~~~~~~~il 91 (92)
T PF13524_consen 77 V----LKRHTWEHRAEQIL 91 (92)
T ss_pred H----HHhCCHHHHHHHHH
Confidence 3 44566677777665
No 139
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.38 E-value=2.5 Score=40.84 Aligned_cols=102 Identities=16% Similarity=0.082 Sum_probs=68.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhhhhhhccCCCCCCeeE-EEcCCCCCCCCCChhhHHHHH
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPLLDSLNANHPSTSLQS-LVLPQPKWPAGSPATRLLKFM 83 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f-~~l~~~~~~~~~~~~~~~~~~ 83 (473)
|||++-..+.|++.-+.++.+.|.+. +.+|+|++.+.+.+.++.. +.++- ..++.. .+ ...+.
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~------p~id~v~~~~~~--~~------~~~~~ 66 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM------PEIRQAIDMPLG--HG------ALELT 66 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC------chhceeeecCCc--cc------chhhh
Confidence 68999999999999999999999996 9999999998776666654 33432 222211 00 00110
Q ss_pred HHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEE
Q 042753 84 RVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVV 130 (473)
Q Consensus 84 ~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~ 130 (473)
....+.+.++.. ++|++|.-........++...|+|.-.
T Consensus 67 ------~~~~~~~~lr~~--~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 67 ------ERRRLGRSLREE--RYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred ------HHHHHHHHHhhc--CCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 112334556777 999999876555566677777887543
No 140
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.19 E-value=2.4 Score=39.80 Aligned_cols=102 Identities=21% Similarity=0.143 Sum_probs=65.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhhhhhhccCCCCCCeeE-EEcCCCCCCCCCChhhHHHHH
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPLLDSLNANHPSTSLQS-LVLPQPKWPAGSPATRLLKFM 83 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f-~~l~~~~~~~~~~~~~~~~~~ 83 (473)
|||++-..+.|++.-+.++.++|+++ +-+|++++.+.+.+.++.. +.++- ..++.. . ....+..+
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~------p~id~v~~~~~~--~---~~~~~~~~- 68 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM------PEVDRVIVLPKK--H---GKLGLGAR- 68 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC------CccCEEEEcCCc--c---cccchHHH-
Confidence 68999999999999999999999997 5899999999887776654 33432 223211 0 00011111
Q ss_pred HHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEE
Q 042753 84 RVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVV 130 (473)
Q Consensus 84 ~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~ 130 (473)
..+...++.. ++|+++.=........++...+++...
T Consensus 69 --------~~~~~~l~~~--~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 69 --------RRLARALRRR--RYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred --------HHHHHHHhhc--CCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 1223335556 899999766655545556666666543
No 141
>PRK14098 glycogen synthase; Provisional
Probab=94.96 E-value=0.43 Score=48.81 Aligned_cols=168 Identities=14% Similarity=0.081 Sum_probs=90.5
Q ss_pred CcEEEEEeCCccc-CCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhc--CCCeEeecCccHH---
Q 042753 273 ESVVYVCFGSRYV-LTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVA--GRGYVIRGWSQQV--- 346 (473)
Q Consensus 273 ~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~nv~v~~~~pq~--- 346 (473)
+..+++..|.... ...+.+.+.+..+.+.+.+++ .++... ...-+.+++... +.++.+....+..
T Consensus 306 ~~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lv-ivG~G~--------~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~ 376 (489)
T PRK14098 306 ETPLVGVIINFDDFQGAELLAESLEKLVELDIQLV-ICGSGD--------KEYEKRFQDFAEEHPEQVSVQTEFTDAFFH 376 (489)
T ss_pred CCCEEEEeccccccCcHHHHHHHHHHHHhcCcEEE-EEeCCC--------HHHHHHHHHHHHHCCCCEEEEEecCHHHHH
Confidence 3456677777754 233444444444444455544 344431 111123333221 3567777777764
Q ss_pred HhhhccCccceeecc---Cc-hhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHH
Q 042753 347 AILRHKAVGAFLTHC---GW-NSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQS 422 (473)
Q Consensus 347 ~lL~~~~v~~~ItHg---G~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~ 422 (473)
.+++.+++ |+.-+ |+ .+.+||+++|+|.|+....+-.........+. +.|...+ ..+++++.++|.++
T Consensus 377 ~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~-~~G~l~~-----~~d~~~la~ai~~~ 448 (489)
T PRK14098 377 LAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDK-GSGFIFH-----DYTPEALVAKLGEA 448 (489)
T ss_pred HHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCC-CceeEeC-----CCCHHHHHHHHHHH
Confidence 57888887 66433 22 47789999999888765432111110011112 5677776 45789999999987
Q ss_pred h---CCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 042753 423 V---DGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 423 l---~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~ 464 (473)
+ +++ .. .++++.. +....-|-+..++++++...+.
T Consensus 449 l~~~~~~-~~---~~~~~~~---~~~~~fsw~~~a~~y~~lY~~~ 486 (489)
T PRK14098 449 LALYHDE-ER---WEELVLE---AMERDFSWKNSAEEYAQLYREL 486 (489)
T ss_pred HHHHcCH-HH---HHHHHHH---HhcCCCChHHHHHHHHHHHHHH
Confidence 6 343 21 1222222 2234456677777777766553
No 142
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.70 E-value=0.14 Score=42.88 Aligned_cols=104 Identities=17% Similarity=0.126 Sum_probs=71.0
Q ss_pred CCCCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCC-----CC--
Q 042753 1 MLPAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWP-----AG-- 73 (473)
Q Consensus 1 ~~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~-----~~-- 73 (473)
|.+.++||++.-.|+.|-..-.+.+++.|.+.|+.|-=+-+++..+-=+.. ||+.+.+.-.... +.
T Consensus 1 ~~~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~-------GF~Ivdl~tg~~~~la~~~~~~ 73 (179)
T COG1618 1 MIKMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRI-------GFKIVDLATGEEGILARVGFSR 73 (179)
T ss_pred CCCcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEe-------eeEEEEccCCceEEEEEcCCCC
Confidence 556789999999999999999999999999999999777666543222222 5666665522111 11
Q ss_pred CChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc
Q 042753 74 SPATRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG 115 (473)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~ 115 (473)
+.-..+....+.+++...+.+++.+++. |+||.|..-+
T Consensus 74 ~rvGkY~V~v~~le~i~~~al~rA~~~a----DvIIIDEIGp 111 (179)
T COG1618 74 PRVGKYGVNVEGLEEIAIPALRRALEEA----DVIIIDEIGP 111 (179)
T ss_pred cccceEEeeHHHHHHHhHHHHHHHhhcC----CEEEEecccc
Confidence 1112233344566656778888888754 9999998743
No 143
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=94.49 E-value=0.074 Score=46.83 Aligned_cols=121 Identities=15% Similarity=0.054 Sum_probs=61.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCC-CCCCCCChhhHHHHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQP-KWPAGSPATRLLKFMR 84 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~-~~~~~~~~~~~~~~~~ 84 (473)
||||+.-==+. +---+..|+++|.+.||+|+++.+...+.-....+. ....++......+ ...+..... ...
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit--~~~pl~~~~~~~~~~~~~~~~~~----v~G 73 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSIT--LHKPLRVTEVEPGHDPGGVEAYA----VSG 73 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS----SSSEEEEEEEE-TTCCSTTEEEE----ESS
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeec--CCCCeEEEEEEecccCCCCCEEE----EcC
Confidence 56666663333 344578899999778899999999877544333221 1112444322100 000000000 000
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeC----------CCcc---hHHHHHHHhCCCcEEEecch
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSD----------FFLG---WTQGLAAELGLPRVVFSPSG 135 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D----------~~~~---~~~~~A~~~giP~v~~~~~~ 135 (473)
.--....-.+..++.+. +||+||+. .+++ .++.-|..+|||.|.++...
T Consensus 74 TPaDcv~~al~~~~~~~--~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~ 135 (196)
T PF01975_consen 74 TPADCVKLALDGLLPDK--KPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDS 135 (196)
T ss_dssp -HHHHHHHHHHCTSTTS--S-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEES
T ss_pred cHHHHHHHHHHhhhccC--CCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccc
Confidence 00002223455556555 79999964 3333 33455677899999987663
No 144
>PHA01630 putative group 1 glycosyl transferase
Probab=94.24 E-value=2.5 Score=40.80 Aligned_cols=110 Identities=9% Similarity=0.043 Sum_probs=62.1
Q ss_pred cCccHHH---hhhccCccceee---ccC-chhHHHHHhhCCeEecCcccc--cchh---hHHHHHH----------Hhcc
Q 042753 341 GWSQQVA---ILRHKAVGAFLT---HCG-WNSVLEGVSAGVVMLTWPMDA--DQYT---NAQLLVD----------QLGV 398 (473)
Q Consensus 341 ~~~pq~~---lL~~~~v~~~It---HgG-~~s~~eal~~GvP~l~~P~~~--DQ~~---na~rv~~----------~~G~ 398 (473)
.++|+.+ +++.+++ |+. ..| ..++.||+++|+|+|+.-..+ |.-. |...+.. -.++
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHV 273 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccc
Confidence 3466544 5788887 542 222 558999999999999976432 2211 1111100 0024
Q ss_pred eEEeccCCCCCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 042753 399 GIRVGEGTRNIPESDELARLLAQSVDGP--RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRIN 462 (473)
Q Consensus 399 G~~l~~~~~~~~~~~~l~~~i~~~l~~~--~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~ 462 (473)
|..++ .+.+++.+++.+++.|. +.++++.+.-+... ...-|-+..++++++.++
T Consensus 274 G~~v~------~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~----~~~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 274 GYFLD------PDIEDAYQKLLEALANWTPEKKKENLEGRAILY----RENYSYNAIAKMWEKILE 329 (331)
T ss_pred ccccC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH----HHhCCHHHHHHHHHHHHh
Confidence 54443 35777888888888762 24444333333322 233566777777777664
No 145
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=93.32 E-value=7.5 Score=37.08 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=43.2
Q ss_pred cHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchh----hHHHHHHHhcceEEec
Q 042753 344 QQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYT----NAQLLVDQLGVGIRVG 403 (473)
Q Consensus 344 pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~----na~rv~~~~G~G~~l~ 403 (473)
|+...|+.++. .+||--..+=+.||+..|+|+.++|+.. +.. -.+.+.+. |+-..++
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~~-g~~r~~~ 281 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEER-GAVRPFT 281 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHHC-CCEEECC
Confidence 67889999986 7889889999999999999999999876 333 22334423 6666655
No 146
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=93.25 E-value=1.1 Score=45.99 Aligned_cols=89 Identities=12% Similarity=0.167 Sum_probs=59.4
Q ss_pred CCeEeecCcc--H-HHhhhccCccceeecc---CchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCC
Q 042753 335 RGYVIRGWSQ--Q-VAILRHKAVGAFLTHC---GWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRN 408 (473)
Q Consensus 335 ~nv~v~~~~p--q-~~lL~~~~v~~~ItHg---G~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 408 (473)
..|.+.++.. + ..++.++++ +|.=+ |.++..||+.+|+|+| .......|. ...=|..++
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~-d~~NG~li~----- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVE-HNKNGYIID----- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeE-cCCCcEEeC-----
Confidence 3566777777 3 346777776 77655 6779999999999999 222333343 213355554
Q ss_pred CCCHHHHHHHHHHHhCCc---HHHHHHHHHHHHHH
Q 042753 409 IPESDELARLLAQSVDGP---RRERLKARELSGAA 440 (473)
Q Consensus 409 ~~~~~~l~~~i~~~l~~~---~~~~~~a~~~~~~~ 440 (473)
+.++|.++|..+|++. +.+...+-+.++.+
T Consensus 474 --d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~y 506 (519)
T TIGR03713 474 --DISELLKALDYYLDNLKNWNYSLAYSIKLIDDY 506 (519)
T ss_pred --CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 6889999999999987 44555555544444
No 147
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=93.18 E-value=1.1 Score=38.47 Aligned_cols=92 Identities=15% Similarity=0.100 Sum_probs=54.4
Q ss_pred hCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCC--CCCCC-hhhHHHHHHHHHHHhhHHHHHHHhc-CCCCCc
Q 042753 31 TLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKW--PAGSP-ATRLLKFMRVLRELHYPALLDWFKS-HPSPPV 106 (473)
Q Consensus 31 ~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~pD 106 (473)
++||+|++++........ +|++...+..+.. .+..+ ...+..-...-+ .+...+.++-++ . .||
T Consensus 1 q~gh~v~fl~~~~~~~~~---------~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~-av~~a~~~L~~~Gf--~PD 68 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP---------PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQ-AVARAARQLRAQGF--VPD 68 (171)
T ss_pred CCCCEEEEEecCCCCCCC---------CCcEEEEeCCCCCCCCCCCcccccHHHHHHHHH-HHHHHHHHHHHcCC--CCC
Confidence 479999999965443222 2676666654321 11111 122222222222 334455555444 4 789
Q ss_pred EEEeCCCcchHHHHHHHh-CCCcEEEecc
Q 042753 107 AILSDFFLGWTQGLAAEL-GLPRVVFSPS 134 (473)
Q Consensus 107 ~VV~D~~~~~~~~~A~~~-giP~v~~~~~ 134 (473)
+||...-.-.++.+-..+ ++|.+.++-.
T Consensus 69 vI~~H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 69 VIIAHPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred EEEEcCCcchhhhHHHhCCCCcEEEEEEE
Confidence 999998766778888888 9999998655
No 148
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=92.85 E-value=0.6 Score=39.73 Aligned_cols=101 Identities=21% Similarity=0.198 Sum_probs=52.7
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhHHH
Q 042753 15 TSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPAL 94 (473)
Q Consensus 15 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (473)
..|=-.-+..|+++|.++||+|+++++.......... ......... .......... .....+
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~-------~~~~~~~~~------~~~~~~~~~~-----~~~~~~ 72 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEEL-------VKIFVKIPY------PIRKRFLRSF-----FFMRRL 72 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SSTE-------EEE---TT-------SSTSS--HHH-----HHHHHH
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhhc-------cceeeeeec------ccccccchhH-----HHHHHH
Confidence 3466677899999999999999999887443222210 011111110 0001111111 123456
Q ss_pred HHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecchH
Q 042753 95 LDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPSGA 136 (473)
Q Consensus 95 ~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~~~ 136 (473)
.+++++. +||+|-+..... +....+.. ++|.+.......
T Consensus 73 ~~~i~~~--~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~ 112 (177)
T PF13439_consen 73 RRLIKKE--KPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPY 112 (177)
T ss_dssp HHHHHHH--T-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH
T ss_pred HHHHHHc--CCCeEEecccchhHHHHHhcc-CCCEEEEeCCCc
Confidence 7778888 999995554433 33333333 999988765544
No 149
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=90.73 E-value=2.9 Score=35.90 Aligned_cols=117 Identities=16% Similarity=0.122 Sum_probs=62.6
Q ss_pred EEcCCCCCChHHHHHHHHHH-HhC-CCeEEEEeCCCCh--hhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHH
Q 042753 10 VYPFPTSGHIIPLLDLTNRL-LTL-GLNVTVLITQNNL--PLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRV 85 (473)
Q Consensus 10 ~~~~~~~GH~~p~l~La~~L-~~r-Gh~Vt~~~~~~~~--~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~ 85 (473)
++..++.||..-|+.|.+.+ .++ .++..+++..+.. .++++... .......+..+|...... +......+..
T Consensus 2 l~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~-~~~~~~~~~~~~r~r~v~---q~~~~~~~~~ 77 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEK-SSSKRHKILEIPRAREVG---QSYLTSIFTT 77 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHH-hccccceeeccceEEEec---hhhHhhHHHH
Confidence 34456789999999999999 333 5666666655432 22222110 000111333333211000 1111122222
Q ss_pred HHHHhhHHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHh------CCCcEEEecc
Q 042753 86 LRELHYPALLDWFKSHPSPPVAILSDFFLG--WTQGLAAEL------GLPRVVFSPS 134 (473)
Q Consensus 86 ~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~------giP~v~~~~~ 134 (473)
+. .+...+.-+ ... +||+||+.-... ....+|..+ |.+.|.+-+.
T Consensus 78 l~-~~~~~~~il-~r~--rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 78 LR-AFLQSLRIL-RRE--RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred HH-HHHHHHHHH-HHh--CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 22 333443333 445 899999998866 345778888 9998887444
No 150
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.63 E-value=16 Score=34.86 Aligned_cols=125 Identities=17% Similarity=0.133 Sum_probs=74.6
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh--hhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHH
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP--LLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLL 80 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~--~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 80 (473)
+..+|+.++..+-.||--.|.-=|..|++.|++|.+++..+... .+-.. ++++++.++....-+..+. .+.
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~h------prI~ih~m~~l~~~~~~p~-~~~ 82 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNH------PRIRIHGMPNLPFLQGGPR-VLF 82 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcC------CceEEEeCCCCcccCCCch-hhh
Confidence 34678999999999999999999999999999999999765432 22222 6899998875432222222 111
Q ss_pred HHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCC-cchHHHHH----HHhCCCcEEEecchHH
Q 042753 81 KFMRVLRELHYPALLDWFKSHPSPPVAILSDFF-LGWTQGLA----AELGLPRVVFSPSGAF 137 (473)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~-~~~~~~~A----~~~giP~v~~~~~~~~ 137 (473)
.....+. .+..-+-.++... ++|.+++-.. ......+| ...|..+++=|....+
T Consensus 83 l~lKvf~-Qfl~Ll~aL~~~~--~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Y 141 (444)
T KOG2941|consen 83 LPLKVFW-QFLSLLWALFVLR--PPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGY 141 (444)
T ss_pred hHHHHHH-HHHHHHHHHHhcc--CCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHH
Confidence 1122222 1122233333334 7888876554 22333444 3346777766554443
No 151
>PLN02939 transferase, transferring glycosyl groups
Probab=89.97 E-value=8.7 Score=42.12 Aligned_cols=83 Identities=12% Similarity=0.115 Sum_probs=52.2
Q ss_pred CCeEeecCccHH---HhhhccCccceeec----cCchhHHHHHhhCCeEecCcccc--cchhh--HHHHHHHhcceEEec
Q 042753 335 RGYVIRGWSQQV---AILRHKAVGAFLTH----CGWNSVLEGVSAGVVMLTWPMDA--DQYTN--AQLLVDQLGVGIRVG 403 (473)
Q Consensus 335 ~nv~v~~~~pq~---~lL~~~~v~~~ItH----gG~~s~~eal~~GvP~l~~P~~~--DQ~~n--a~rv~~~~G~G~~l~ 403 (473)
++|.+..+.+.. .+++.+++ ||.- +-..+.+||+++|+|.|+....+ |.-.. ...+...-+-|....
T Consensus 837 drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~ 914 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFL 914 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEec
Confidence 467776777764 47888887 7743 33458999999999988865533 21110 000110114576665
Q ss_pred cCCCCCCCHHHHHHHHHHHhC
Q 042753 404 EGTRNIPESDELARLLAQSVD 424 (473)
Q Consensus 404 ~~~~~~~~~~~l~~~i~~~l~ 424 (473)
..+.+.+.++|.+++.
T Consensus 915 -----~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 915 -----TPDEQGLNSALERAFN 930 (977)
T ss_pred -----CCCHHHHHHHHHHHHH
Confidence 3578889888888764
No 152
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=89.74 E-value=1.8 Score=39.38 Aligned_cols=98 Identities=17% Similarity=0.117 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCC--CCCCCCChhhHHHHHHHHHHHhhHHHHHH
Q 042753 20 IPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQP--KWPAGSPATRLLKFMRVLRELHYPALLDW 97 (473)
Q Consensus 20 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 97 (473)
--+.+|++.|. .+++|+++.+..++.-+...+. ....++...+... ...+-|.+ ...-.+..+
T Consensus 14 ~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slT--l~~Plr~~~~~~~~~av~GTPaD------------CV~lal~~l 78 (252)
T COG0496 14 PGIRALARALR-EGADVTVVAPDREQSGASHSLT--LHEPLRVRQVDNGAYAVNGTPAD------------CVILGLNEL 78 (252)
T ss_pred HHHHHHHHHHh-hCCCEEEEccCCCCcccccccc--cccCceeeEeccceEEecCChHH------------HHHHHHHHh
Confidence 33667888888 8999999999877544433221 0112332222211 01111111 333456777
Q ss_pred HhcCCCCCcEEEeC----------CCcc---hHHHHHHHhCCCcEEEecc
Q 042753 98 FKSHPSPPVAILSD----------FFLG---WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 98 l~~~~~~pD~VV~D----------~~~~---~~~~~A~~~giP~v~~~~~ 134 (473)
+++. .||+||+. ..++ .++.=|..+|||.|.++..
T Consensus 79 ~~~~--~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 79 LKEP--RPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred ccCC--CCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 7776 79999964 3333 3445567789999998655
No 153
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=89.21 E-value=3.4 Score=38.12 Aligned_cols=91 Identities=20% Similarity=0.228 Sum_probs=56.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh-hhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP-LLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
+||+++.. .|. -..|++.|.++||+|+..+...... .+... ...... .. .
T Consensus 1 m~ILvlGG--T~e---gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~------g~~~v~-~g-----~------------ 51 (256)
T TIGR00715 1 MTVLLMGG--TVD---SRAIAKGLIAQGIEILVTVTTSEGKHLYPIH------QALTVH-TG-----A------------ 51 (256)
T ss_pred CeEEEEec--hHH---HHHHHHHHHhCCCeEEEEEccCCcccccccc------CCceEE-EC-----C------------
Confidence 35655543 332 5689999999999999888765432 22221 011221 11 0
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc------hHHHHHHHhCCCcEEE
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSDFFLG------WTQGLAAELGLPRVVF 131 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~------~~~~~A~~~giP~v~~ 131 (473)
.-...+.+++++. ++|+||--.+-+ -+..+|+++|||++.+
T Consensus 52 ----l~~~~l~~~l~~~--~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 52 ----LDPQELREFLKRH--SIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred ----CCHHHHHHHHHhc--CCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 0113366778888 999888555422 2357889999999996
No 154
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=87.86 E-value=6 Score=36.35 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=24.6
Q ss_pred cEEEEEc---CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh
Q 042753 6 AHILVYP---FPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP 46 (473)
Q Consensus 6 ~~Il~~~---~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 46 (473)
||||+.- +.+.| +.+|+++|.+ +|+|+++.+...+.
T Consensus 1 M~ILvtNDDGi~apG----l~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGINAEG----INTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCCCChh----HHHHHHHHHh-CCcEEEEccCCCCc
Confidence 3676665 22333 7788888865 68999998876644
No 155
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=86.99 E-value=3.4 Score=37.94 Aligned_cols=91 Identities=11% Similarity=0.035 Sum_probs=57.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
|++|+++..-+-| -.||+.|.++|+.|++.+...... ... .+.....=. +
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~~-------~~~~v~~G~------l----------- 51 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PAD-------LPGPVRVGG------F----------- 51 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-ccc-------CCceEEECC------C-----------
Confidence 5778877665555 468999999999888776665433 111 122222111 1
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc------hHHHHHHHhCCCcEEE
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSDFFLG------WTQGLAAELGLPRVVF 131 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~------~~~~~A~~~giP~v~~ 131 (473)
.-.+.+.+++++. ++++||=-.+-+ -+..+|+++|||++.|
T Consensus 52 ----~~~~~l~~~l~~~--~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 52 ----GGAEGLAAYLREE--GIDLVIDATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred ----CCHHHHHHHHHHC--CCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence 0235677788888 999988333311 2457889999999997
No 156
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=86.85 E-value=4.6 Score=30.45 Aligned_cols=79 Identities=22% Similarity=0.303 Sum_probs=48.7
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhHHHHHHHhcC
Q 042753 22 LLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPALLDWFKSH 101 (473)
Q Consensus 22 ~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 101 (473)
++.+++.|.+.|++| + +++.....++.. |+....+.....++ .+.+.+.++..
T Consensus 2 ~~~~~~~l~~lG~~i-~-AT~gTa~~L~~~-------Gi~~~~~~~ki~~~------------------~~~i~~~i~~g 54 (90)
T smart00851 2 LVELAKRLAELGFEL-V-ATGGTAKFLREA-------GLPVKTLHPKVHGG------------------ILAILDLIKNG 54 (90)
T ss_pred HHHHHHHHHHCCCEE-E-EccHHHHHHHHC-------CCcceeccCCCCCC------------------CHHHHHHhcCC
Confidence 468999999999997 3 444455666655 45442111100011 12366778888
Q ss_pred CCCCcEEEeCCCc---------chHHHHHHHhCCCcE
Q 042753 102 PSPPVAILSDFFL---------GWTQGLAAELGLPRV 129 (473)
Q Consensus 102 ~~~pD~VV~D~~~---------~~~~~~A~~~giP~v 129 (473)
++|+||..... ......|...+||++
T Consensus 55 --~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 55 --EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred --CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 99999985431 123467888899976
No 157
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=86.76 E-value=0.62 Score=45.76 Aligned_cols=115 Identities=13% Similarity=0.212 Sum_probs=67.8
Q ss_pred CCCeEee-cCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCC--CCCC
Q 042753 334 GRGYVIR-GWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGT--RNIP 410 (473)
Q Consensus 334 ~~nv~v~-~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~--~~~~ 410 (473)
..+++.. +..+-.++|..+++ +||--. ..+.|.++.++|++......|++... + |.-......- ..--
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~-----r-g~~~~~~~~~pg~~~~ 321 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKE-----R-GFYFDYEEDLPGPIVY 321 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT-----S-SBSS-TTTSSSS-EES
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEech-hHHHHHHHhCCCEEEEeccHHHHhhc-----c-CCCCchHhhCCCceeC
Confidence 3555543 44467889999998 999885 48899999999999887666655322 1 3222221000 1123
Q ss_pred CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 042753 411 ESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFI 458 (473)
Q Consensus 411 ~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~ 458 (473)
+.++|.++|+.++++++.++++-+++.+.+-.. .+|.++++.++.++
T Consensus 322 ~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 322 NFEELIEAIENIIENPDEYKEKREKFRDKFFKY-NDGNSSERIVNYIF 368 (369)
T ss_dssp SHHHHHHHHTTHHHHHHHTHHHHHHHHHHHSTT---S-HHHHHHHHHH
T ss_pred CHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCCC-CCchHHHHHHHHHh
Confidence 689999999998877645666677777777543 56776666666554
No 158
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=86.64 E-value=8.5 Score=38.99 Aligned_cols=102 Identities=20% Similarity=0.156 Sum_probs=65.2
Q ss_pred ecCccHHH---hhhccCccceee---ccC-chhHHHHHhhCCe----EecCcccccchhhHHHHHHHhcceEEeccCCCC
Q 042753 340 RGWSQQVA---ILRHKAVGAFLT---HCG-WNSVLEGVSAGVV----MLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRN 408 (473)
Q Consensus 340 ~~~~pq~~---lL~~~~v~~~It---HgG-~~s~~eal~~GvP----~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 408 (473)
...+++.+ ++..+++ |+. +-| ..+..||+++|+| +|+--..+ .+..+ +-|+.++
T Consensus 341 ~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~l----~~gllVn----- 405 (456)
T TIGR02400 341 NRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQEL----NGALLVN----- 405 (456)
T ss_pred cCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHHh----CCcEEEC-----
Confidence 34556655 4677887 553 345 4588899999999 55543332 22222 3366666
Q ss_pred CCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042753 409 IPESDELARLLAQSVDGP-RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRI 461 (473)
Q Consensus 409 ~~~~~~l~~~i~~~l~~~-~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 461 (473)
..+.++++++|.++|+.+ +..+++.+++.+.+. . -+...-++.+++.+
T Consensus 406 P~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~----~-~~~~~W~~~~l~~l 454 (456)
T TIGR02400 406 PYDIDGMADAIARALTMPLEEREERHRAMMDKLR----K-NDVQRWREDFLSDL 454 (456)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh----h-CCHHHHHHHHHHHh
Confidence 457899999999999865 455556666666653 2 45666666666554
No 159
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=86.00 E-value=11 Score=36.04 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=35.3
Q ss_pred ccEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhh
Q 042753 5 GAHILVYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPL 47 (473)
Q Consensus 5 ~~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 47 (473)
|+||+|+. =+|-|-..-..++|-.|++.|..|.++++++.+..
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL 44 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSL 44 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCch
Confidence 57888777 56779999999999999999998888888766443
No 160
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=85.69 E-value=5.1 Score=38.48 Aligned_cols=46 Identities=9% Similarity=0.147 Sum_probs=40.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhhhhhh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPLLDSL 51 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~ 51 (473)
||||++-..+.|++.-..++.+.|+++ +.+|++++.+.+.+.++..
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~ 48 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWH 48 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcC
Confidence 489999999999999999999999997 9999999998776655533
No 161
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=85.67 E-value=17 Score=36.52 Aligned_cols=139 Identities=13% Similarity=0.144 Sum_probs=83.3
Q ss_pred CCcEEEEEeCCcccCCHHHHHHHHHHHHh-CCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEe-ecCcc-H-HH
Q 042753 272 DESVVYVCFGSRYVLTAKQIHELAAALEK-TDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVI-RGWSQ-Q-VA 347 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~-~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v-~~~~p-q-~~ 347 (473)
...+++++ ..+.++.+....++ ++.++=...... ..+.+.+...-+|++. ..+.+ + .+
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te-----------~s~kL~~L~~y~nvvly~~~~~~~l~~ 343 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE-----------MSSKLMSLDKYDNVKLYPNITTQKIQE 343 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc-----------ccHHHHHHHhcCCcEEECCcChHHHHH
Confidence 45677775 24455555555555 355554433332 1123322212256554 45566 3 56
Q ss_pred hhhccCccceeeccC--chhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCC
Q 042753 348 ILRHKAVGAFLTHCG--WNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDG 425 (473)
Q Consensus 348 lL~~~~v~~~ItHgG--~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~ 425 (473)
++..|++=+-|+||. ..++.||+.+|+|++..=.... +...+. . |-... .-+.+++.++|.++|++
T Consensus 344 ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i~-~---g~l~~-----~~~~~~m~~~i~~lL~d 411 (438)
T TIGR02919 344 LYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFIA-S---ENIFE-----HNEVDQLISKLKDLLND 411 (438)
T ss_pred HHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccC---Cccccc-C---Cceec-----CCCHHHHHHHHHHHhcC
Confidence 999999988888876 6799999999999998743322 222222 2 43444 34689999999999998
Q ss_pred cHHHHHHHHHHHHHH
Q 042753 426 PRRERLKARELSGAA 440 (473)
Q Consensus 426 ~~~~~~~a~~~~~~~ 440 (473)
++.+.++...-++..
T Consensus 412 ~~~~~~~~~~q~~~a 426 (438)
T TIGR02919 412 PNQFRELLEQQREHA 426 (438)
T ss_pred HHHHHHHHHHHHHHh
Confidence 745555555444443
No 162
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=85.47 E-value=32 Score=32.19 Aligned_cols=114 Identities=19% Similarity=0.228 Sum_probs=66.5
Q ss_pred CCCeEeecCcc---HHHhhhccCccceeec---cCch-hHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCC
Q 042753 334 GRGYVIRGWSQ---QVAILRHKAVGAFLTH---CGWN-SVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGT 406 (473)
Q Consensus 334 ~~nv~v~~~~p---q~~lL~~~~v~~~ItH---gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 406 (473)
..++....+++ ...++..+++ ++.- .|.| ++.||+++|+|++... .......+. .-+.|. +.
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~~-~~~~g~-~~--- 324 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVVE-DGETGL-LV--- 324 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECC----CCChHHHhc-CCCceE-ec---
Confidence 35677788888 3336666765 5555 3554 4599999999996654 333333333 312476 43
Q ss_pred CCCCCHHHHHHHHHHHhCCcHHHHHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 042753 407 RNIPESDELARLLAQSVDGPRRERLKARE-LSGAALSAVVKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 407 ~~~~~~~~l~~~i~~~l~~~~~~~~~a~~-~~~~~~~~~~~~gs~~~~~~~~~~~~~~~ 464 (473)
.. .+.+++.+++..++++. +..+.... ..+.+ ...-+-+...+.+.+.+.+.
T Consensus 325 ~~-~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 377 (381)
T COG0438 325 PP-GDVEELADALEQLLEDP-ELREELGEAARERV----EEEFSWERIAEQLLELYEEL 377 (381)
T ss_pred CC-CCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHH----HHhcCHHHHHHHHHHHHHHH
Confidence 12 27899999999999885 44444433 22222 22344445555666555543
No 163
>PRK12342 hypothetical protein; Provisional
Probab=85.29 E-value=9.8 Score=35.04 Aligned_cols=99 Identities=16% Similarity=0.052 Sum_probs=57.1
Q ss_pred ChHHH----HHHHHHHHhCCCeEEEEeCCCCh--hh-h-hhhccCCCCCCe-eEEEcCCCCCCCCCChhhHHHHHHHHHH
Q 042753 18 HIIPL----LDLTNRLLTLGLNVTVLITQNNL--PL-L-DSLNANHPSTSL-QSLVLPQPKWPAGSPATRLLKFMRVLRE 88 (473)
Q Consensus 18 H~~p~----l~La~~L~~rGh~Vt~~~~~~~~--~~-i-~~~~~~~~~~~~-~f~~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (473)
-+||+ +..|-+|++.|.+||.++-.+.. .. + +..++- |. +-+.+... .+...+.+
T Consensus 32 ~iNp~D~~AlE~AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~alam----GaD~avli~d~---~~~g~D~~--------- 95 (254)
T PRK12342 32 KISQFDLNAIEAASQLATDGDEIAALTVGGSLLQNSKVRKDVLSR----GPHSLYLVQDA---QLEHALPL--------- 95 (254)
T ss_pred cCChhhHHHHHHHHHHhhcCCEEEEEEeCCChHhHHHHHHHHHHc----CCCEEEEEecC---ccCCCCHH---------
Confidence 46664 45566777679999999876533 22 3 433221 11 12222211 11111100
Q ss_pred HhhHHHHHHHhcCCCCCcEEEeCCCcc------hHHHHHHHhCCCcEEEecc
Q 042753 89 LHYPALLDWFKSHPSPPVAILSDFFLG------WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 89 ~~~~~l~~~l~~~~~~pD~VV~D~~~~------~~~~~A~~~giP~v~~~~~ 134 (473)
.....|.+.++.. +||+|++..-+. -+..+|+.+|+|++++...
T Consensus 96 ata~~La~~i~~~--~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 96 DTAKALAAAIEKI--GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHHHHHh--CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 2234455556667 799999876654 2789999999999997655
No 164
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=85.15 E-value=11 Score=34.73 Aligned_cols=39 Identities=18% Similarity=0.053 Sum_probs=24.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhh
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPL 47 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 47 (473)
|||+.-==+. |---+.+|+++|.+ +|+|+++.+...+.-
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg 40 (253)
T PRK13935 2 NILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSA 40 (253)
T ss_pred eEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCcc
Confidence 6666652222 22236778888865 689988888766443
No 165
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=84.88 E-value=5.6 Score=31.26 Aligned_cols=83 Identities=16% Similarity=0.163 Sum_probs=56.3
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhHHHHHH
Q 042753 18 HIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPALLDW 97 (473)
Q Consensus 18 H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 97 (473)
+-.-++++++.|.+.|+++. +++.....++.. ++....+..+. ...+.+.+.
T Consensus 11 ~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~-------gi~~~~v~~~~-------------------~~~~~i~~~ 62 (110)
T cd01424 11 DKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEA-------GIPVEVVNKVS-------------------EGRPNIVDL 62 (110)
T ss_pred cHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHc-------CCeEEEEeecC-------------------CCchhHHHH
Confidence 55678899999999999973 455566666665 55544332110 122556777
Q ss_pred HhcCCCCCcEEEeCCCc-------chHHHHHHHhCCCcEE
Q 042753 98 FKSHPSPPVAILSDFFL-------GWTQGLAAELGLPRVV 130 (473)
Q Consensus 98 l~~~~~~pD~VV~D~~~-------~~~~~~A~~~giP~v~ 130 (473)
+++. ++|+||.-... +.....|-.+|||+++
T Consensus 63 i~~~--~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 63 IKNG--EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHcC--CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 8888 99999985322 3455778899999885
No 166
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=84.88 E-value=3.7 Score=35.02 Aligned_cols=111 Identities=24% Similarity=0.229 Sum_probs=63.3
Q ss_pred EEEEEcCCCCCChHH----HHHHHHHHHhC-CCeEEEEeCCC---ChhhhhhhccCCCCCCe-eEEEcCCCCCCCCCChh
Q 042753 7 HILVYPFPTSGHIIP----LLDLTNRLLTL-GLNVTVLITQN---NLPLLDSLNANHPSTSL-QSLVLPQPKWPAGSPAT 77 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p----~l~La~~L~~r-Gh~Vt~~~~~~---~~~~i~~~~~~~~~~~~-~f~~l~~~~~~~~~~~~ 77 (473)
+|+++.-...|.++| .+..|++|.+. |.+|+.++..+ ..+.++..... .|. +.+.+..+......
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~---~G~d~v~~~~~~~~~~~~--- 74 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAK---YGADKVYHIDDPALAEYD--- 74 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHS---TTESEEEEEE-GGGTTC----
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhh---cCCcEEEEecCccccccC---
Confidence 355555444566666 67889999985 88888877653 22232222110 133 33444422111111
Q ss_pred hHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc---hHHHHHHHhCCCcEEEecc
Q 042753 78 RLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG---WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~---~~~~~A~~~giP~v~~~~~ 134 (473)
.......+.+++++. +||+|++..... .+..+|.++|.|++.-...
T Consensus 75 ---------~~~~a~~l~~~~~~~--~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~~ 123 (164)
T PF01012_consen 75 ---------PEAYADALAELIKEE--GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVTD 123 (164)
T ss_dssp ---------HHHHHHHHHHHHHHH--T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEEE
T ss_pred ---------HHHHHHHHHHHHHhc--CCCEEEEcCcCCCCcHHHHHHHHhCCCccceEEE
Confidence 113446667777777 999999887655 4568999999999986554
No 167
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=83.98 E-value=44 Score=32.59 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=28.6
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCC
Q 042753 9 LVYPFPTSGHIIPLLDLTNRLLTL-GLNVTVLITQ 42 (473)
Q Consensus 9 l~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~ 42 (473)
.+-..==+|++-.+-.||+.|+++ |++|++.+.+
T Consensus 4 FC~VIDNfGDIGVcWRLArqLa~e~g~~VrLwvDd 38 (374)
T PF10093_consen 4 FCRVIDNFGDIGVCWRLARQLAAEHGQQVRLWVDD 38 (374)
T ss_pred eEEeccCCcchHHHHHHHHHHHHHhCCeEEEEECC
Confidence 333445579999999999999997 9999999976
No 168
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.79 E-value=7.5 Score=36.26 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=66.6
Q ss_pred eecCccHHHhhhccCccceeeccCchhHHH-HHhhCCeEecCcccccchhh--HHHHHHHhcceEEeccCCCCCCCHHHH
Q 042753 339 IRGWSQQVAILRHKAVGAFLTHCGWNSVLE-GVSAGVVMLTWPMDADQYTN--AQLLVDQLGVGIRVGEGTRNIPESDEL 415 (473)
Q Consensus 339 v~~~~pq~~lL~~~~v~~~ItHgG~~s~~e-al~~GvP~l~~P~~~DQ~~n--a~rv~~~~G~G~~l~~~~~~~~~~~~l 415 (473)
+..|-...++|.++++ .|-- .||..| ++=.|+|+|.+|-.+-|+.- |.|=.+-+|+.+.+- +..++.-
T Consensus 299 ~lsqqsfadiLH~ada--algm--AGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv-----~~~aq~a 369 (412)
T COG4370 299 WLSQQSFADILHAADA--ALGM--AGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLV-----RPEAQAA 369 (412)
T ss_pred EEeHHHHHHHHHHHHH--HHHh--ccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeec-----CCchhhH
Confidence 4466677788888775 3332 344444 56789999999999999764 455555567777666 2334444
Q ss_pred HHHHHHHhCCcHHHHHHHHHHH-HHHHHHHhcCCChHHHHHHHHHHHHhh
Q 042753 416 ARLLAQSVDGPRRERLKARELS-GAALSAVVKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 416 ~~~i~~~l~~~~~~~~~a~~~~-~~~~~~~~~~gs~~~~~~~~~~~~~~~ 464 (473)
..+.+++|.|+ .+.++++.=. +++ - +..++..+.|.+.++
T Consensus 370 ~~~~q~ll~dp-~r~~air~nGqrRi----G----qaGaa~rIAe~l~e~ 410 (412)
T COG4370 370 AQAVQELLGDP-QRLTAIRHNGQRRI----G----QAGAARRIAEELGEM 410 (412)
T ss_pred HHHHHHHhcCh-HHHHHHHhcchhhc----c----CcchHHHHHHHHHHh
Confidence 44555699998 7776665322 222 1 222555666666554
No 169
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=83.55 E-value=6.5 Score=39.94 Aligned_cols=102 Identities=18% Similarity=0.135 Sum_probs=59.0
Q ss_pred eecCccHHH---hhhccCccceee---ccCc-hhHHHHHhhCCe----EecCcccccchhhHHHHHHHhcceEEeccCCC
Q 042753 339 IRGWSQQVA---ILRHKAVGAFLT---HCGW-NSVLEGVSAGVV----MLTWPMDADQYTNAQLLVDQLGVGIRVGEGTR 407 (473)
Q Consensus 339 v~~~~pq~~---lL~~~~v~~~It---HgG~-~s~~eal~~GvP----~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 407 (473)
..+++++.+ ++..+++ ||. .-|+ .+++||+++|+| +|+--..+ .+... .-|+.++
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~~~~~----~~g~lv~---- 410 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----AAEEL----SGALLVN---- 410 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc----chhhc----CCCEEEC----
Confidence 346777655 5777887 553 3454 477999999999 44432211 11111 2366665
Q ss_pred CCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 042753 408 NIPESDELARLLAQSVDGP-RRERLKARELSGAALSAVVKGGSSDRDLNDFIKR 460 (473)
Q Consensus 408 ~~~~~~~l~~~i~~~l~~~-~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~ 460 (473)
.-+.+++.++|.++++++ +..++..++.++.+. .-+.+.-++.++..
T Consensus 411 -p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~ 458 (460)
T cd03788 411 -PYDIDEVADAIHRALTMPLEERRERHRKLREYVR-----THDVQAWANSFLDD 458 (460)
T ss_pred -CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHh
Confidence 357899999999999876 223333333333332 24455555555544
No 170
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=83.52 E-value=29 Score=30.20 Aligned_cols=59 Identities=22% Similarity=0.390 Sum_probs=37.4
Q ss_pred ccEEEEEc---CCC-CCCh-HHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCC
Q 042753 5 GAHILVYP---FPT-SGHI-IPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQP 68 (473)
Q Consensus 5 ~~~Il~~~---~~~-~GH~-~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~ 68 (473)
|.||.++- .|+ +|=+ .-...|+..|+++||+||+.+.......-.. ...+++...+|.+
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~-----~y~gv~l~~i~~~ 64 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEF-----EYNGVRLVYIPAP 64 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCc-----ccCCeEEEEeCCC
Confidence 78887665 343 3444 3355677888888999999998755422111 1246777777754
No 171
>PRK14099 glycogen synthase; Provisional
Probab=83.40 E-value=17 Score=37.21 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=29.2
Q ss_pred ccEEEEEcC---C---CCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPF---P---TSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~---~---~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
.+|||+++. | +.|=-...-+|.++|+++||+|.++.+.
T Consensus 3 ~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 3 PLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 478988762 2 2255566788999999999999999984
No 172
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=82.93 E-value=3.1 Score=36.39 Aligned_cols=101 Identities=16% Similarity=0.120 Sum_probs=51.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhh-hhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHH
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPL-LDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFM 83 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~-i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~ 83 (473)
+++.+-..+-|-++-..+|+++|.++ |++|.+-++...... +.+... +.+...-+|.+
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~----~~v~~~~~P~D--------------- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP----DRVDVQYLPLD--------------- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G----GG-SEEE---S---------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC----CCeEEEEeCcc---------------
Confidence 44444455679999999999999997 999999887655433 333311 12333334431
Q ss_pred HHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcch--HHHHHHHhCCCcEEEecc
Q 042753 84 RVLRELHYPALLDWFKSHPSPPVAILSDFFLGW--TQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 84 ~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~--~~~~A~~~giP~v~~~~~ 134 (473)
......+++..+ +||++|.-....| .+..|++.|||.+.+..-
T Consensus 83 ------~~~~~~rfl~~~--~P~~~i~~EtElWPnll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 83 ------FPWAVRRFLDHW--RPDLLIWVETELWPNLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp ------SHHHHHHHHHHH----SEEEEES----HHHHHH-----S-EEEEEE-
T ss_pred ------CHHHHHHHHHHh--CCCEEEEEccccCHHHHHHHhhcCCCEEEEeee
Confidence 113446667778 8998886555444 347778889999887443
No 173
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=82.72 E-value=8.6 Score=35.97 Aligned_cols=111 Identities=17% Similarity=0.106 Sum_probs=69.3
Q ss_pred cEE-EEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccC--------CCCCCeeEEEcCCCCCCCCCCh
Q 042753 6 AHI-LVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNAN--------HPSTSLQSLVLPQPKWPAGSPA 76 (473)
Q Consensus 6 ~~I-l~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~--------~~~~~~~f~~l~~~~~~~~~~~ 76 (473)
+++ .+.-.|+-|--.-.-.|.++|.++||+|-++..++..++.-.++-. ...+++=+.++| ..
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~--------sr 122 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSP--------SR 122 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecC--------CC
Confidence 544 5878999999999999999999999999999987665443333210 112333333322 12
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHhCCCcEEE
Q 042753 77 TRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG--WTQGLAAELGLPRVVF 131 (473)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~giP~v~~ 131 (473)
..+........ ....+++.. ++|+||++..-. .=..++...++=.+..
T Consensus 123 G~lGGlS~at~-----~~i~~ldAa--G~DvIIVETVGvGQsev~I~~~aDt~~~v~ 172 (323)
T COG1703 123 GTLGGLSRATR-----EAIKLLDAA--GYDVIIVETVGVGQSEVDIANMADTFLVVM 172 (323)
T ss_pred ccchhhhHHHH-----HHHHHHHhc--CCCEEEEEecCCCcchhHHhhhcceEEEEe
Confidence 22233333332 334556667 999999998755 2356666666654443
No 174
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=82.38 E-value=20 Score=32.45 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=24.5
Q ss_pred CCcEEEe-CCCcc-hHHHHHHHhCCCcEEEecchH
Q 042753 104 PPVAILS-DFFLG-WTQGLAAELGLPRVVFSPSGA 136 (473)
Q Consensus 104 ~pD~VV~-D~~~~-~~~~~A~~~giP~v~~~~~~~ 136 (473)
-||++|+ |+..- -+..=|.++|||+|.++-..+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 3998874 54433 577889999999999876644
No 175
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=82.23 E-value=13 Score=33.00 Aligned_cols=108 Identities=14% Similarity=0.122 Sum_probs=56.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKF 82 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 82 (473)
|+||+++..+. |+ -+.++.+.+.+. +++|.++.+......+.+... ..++.+..++... +..
T Consensus 1 m~ki~vl~sg~-gs--~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~---~~gIp~~~~~~~~---~~~------- 64 (200)
T PRK05647 1 MKRIVVLASGN-GS--NLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAE---AAGIPTFVLDHKD---FPS------- 64 (200)
T ss_pred CceEEEEEcCC-Ch--hHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHH---HcCCCEEEECccc---cCc-------
Confidence 78998887755 33 345777778775 477887655432122211110 1256665544211 100
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecc
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~ 134 (473)
.....+.+.+.+++. +||++|+-.+.. ....+-....--++-++++
T Consensus 65 ----~~~~~~~~~~~l~~~--~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHps 111 (200)
T PRK05647 65 ----REAFDAALVEALDAY--QPDLVVLAGFMRILGPTFVSAYEGRIINIHPS 111 (200)
T ss_pred ----hhHhHHHHHHHHHHh--CcCEEEhHHhhhhCCHHHHhhccCCEEEEeCc
Confidence 113345667788888 999999854422 2333333333334444444
No 176
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=82.15 E-value=41 Score=30.91 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=50.9
Q ss_pred HHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEe-----ecCccHHHhhhccCccceeeccCchhHHH
Q 042753 294 LAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVI-----RGWSQQVAILRHKAVGAFLTHCGWNSVLE 368 (473)
Q Consensus 294 ~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v-----~~~~pq~~lL~~~~v~~~ItHgG~~s~~e 368 (473)
+.+.+++.+..|+.+.+... ++.+-.-+.++......++ .++=|+.++|+.++. .++|--..|-..|
T Consensus 189 l~k~l~~~g~~~lisfSRRT-------p~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady-ii~TaDSinM~sE 260 (329)
T COG3660 189 LVKILENQGGSFLISFSRRT-------PDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY-IISTADSINMCSE 260 (329)
T ss_pred HHHHHHhCCceEEEEeecCC-------cHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce-EEEecchhhhhHH
Confidence 55566778899998887653 1111122222222222222 245599999998886 5677888888999
Q ss_pred HHhhCCeEecC
Q 042753 369 GVSAGVVMLTW 379 (473)
Q Consensus 369 al~~GvP~l~~ 379 (473)
|.+.|+|+.++
T Consensus 261 AasTgkPv~~~ 271 (329)
T COG3660 261 AASTGKPVFIL 271 (329)
T ss_pred HhccCCCeEEE
Confidence 99999998553
No 177
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=81.07 E-value=5.7 Score=37.83 Aligned_cols=42 Identities=19% Similarity=0.140 Sum_probs=33.7
Q ss_pred cEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhh
Q 042753 6 AHILVYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPL 47 (473)
Q Consensus 6 ~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 47 (473)
+|++|+. -+|-|-..-..++|-.++++|++|.++++++.+..
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L 43 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSL 43 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccH
Confidence 4666555 66779999999999999999999999999877543
No 178
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=81.04 E-value=3 Score=33.29 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=35.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhh
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLL 48 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 48 (473)
||++.+.++-.|.....-++..|.++|++|+++......+.+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l 42 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEI 42 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 588999999999999999999999999999998865444333
No 179
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=81.01 E-value=7.9 Score=30.60 Aligned_cols=84 Identities=13% Similarity=0.052 Sum_probs=54.1
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhHHHHHH
Q 042753 18 HIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPALLDW 97 (473)
Q Consensus 18 H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 97 (473)
+=.-++.+|+.|.+.|+++ ++++.....++.. |+....+.... ++ ..+++.+.
T Consensus 10 ~K~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~~-------Gi~~~~v~~~~-~~-----------------g~~~i~~~ 62 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL--FATGGTSRVLADA-------GIPVRAVSKRH-ED-----------------GEPTVDAA 62 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE--EECcHHHHHHHHc-------CCceEEEEecC-CC-----------------CCcHHHHH
Confidence 3455789999999999987 3555566666665 45544332111 00 23556777
Q ss_pred Hhc-CCCCCcEEEeCC--Cc--------chHHHHHHHhCCCcEE
Q 042753 98 FKS-HPSPPVAILSDF--FL--------GWTQGLAAELGLPRVV 130 (473)
Q Consensus 98 l~~-~~~~pD~VV~D~--~~--------~~~~~~A~~~giP~v~ 130 (473)
+++ . ++|+||.-. .. +.....|-.++||+++
T Consensus 63 i~~~g--~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 63 IAEKG--KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HhCCC--CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 777 7 999999732 22 1234678889999877
No 180
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=80.31 E-value=18 Score=32.05 Aligned_cols=146 Identities=14% Similarity=0.009 Sum_probs=81.7
Q ss_pred CCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhh
Q 042753 271 RDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILR 350 (473)
Q Consensus 271 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~ 350 (473)
.+++++.|+.|.++. ..+..|.+.+..+.++-+. +.+.+.+......+.......+..-+.
T Consensus 9 ~~k~vLVIGgG~va~-------~ka~~Ll~~ga~V~VIs~~------------~~~~l~~l~~~~~i~~~~~~~~~~~l~ 69 (202)
T PRK06718 9 SNKRVVIVGGGKVAG-------RRAITLLKYGAHIVVISPE------------LTENLVKLVEEGKIRWKQKEFEPSDIV 69 (202)
T ss_pred CCCEEEEECCCHHHH-------HHHHHHHHCCCeEEEEcCC------------CCHHHHHHHhCCCEEEEecCCChhhcC
Confidence 467888888887762 3456666777776655332 113333322223344444444555677
Q ss_pred ccCccceeeccCchhHHHHHh----hCCeEecCcccccchhhHHH-----HHHHhcceEEeccCCCCCCCHHHHHHHHHH
Q 042753 351 HKAVGAFLTHCGWNSVLEGVS----AGVVMLTWPMDADQYTNAQL-----LVDQLGVGIRVGEGTRNIPESDELARLLAQ 421 (473)
Q Consensus 351 ~~~v~~~ItHgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~r-----v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ 421 (473)
.+++ +|.--+.-.+.+.++ .|+++-+ .|.+..+.. +.+- ++-+.+..+...-.-+..|++.|.+
T Consensus 70 ~adl--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~~ie~ 142 (202)
T PRK06718 70 DAFL--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRG-KLTISVSTDGASPKLAKKIRDELEA 142 (202)
T ss_pred CceE--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcC-CeEEEEECCCCChHHHHHHHHHHHH
Confidence 7776 888777777777665 3554433 355444332 2212 3444444211344445677778877
Q ss_pred HhCCc-HHHHHHHHHHHHHHHH
Q 042753 422 SVDGP-RRERLKARELSGAALS 442 (473)
Q Consensus 422 ~l~~~-~~~~~~a~~~~~~~~~ 442 (473)
++..+ ..+-+.+.++++.+++
T Consensus 143 ~~~~~~~~~~~~~~~~R~~~k~ 164 (202)
T PRK06718 143 LYDESYESYIDFLYECRQKIKE 164 (202)
T ss_pred HcchhHHHHHHHHHHHHHHHHH
Confidence 77433 4666777777777764
No 181
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=80.17 E-value=1.9 Score=35.20 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=36.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSL 51 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~ 51 (473)
+||++...++.+=+. ...+.++|.++|++|.++.++...+.+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 588888887776666 999999999999999999999776666554
No 182
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.61 E-value=49 Score=30.78 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=26.4
Q ss_pred CCCCCChHHHHHHHHHHHh-CCCeEEEEeCC
Q 042753 13 FPTSGHIIPLLDLTNRLLT-LGLNVTVLITQ 42 (473)
Q Consensus 13 ~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~ 42 (473)
.--+|++-..-.||+.|++ +||+|.+-+.+
T Consensus 11 iDNyGDIGV~wRLARql~re~G~~VrLWvDd 41 (370)
T COG4394 11 IDNYGDIGVAWRLARQLKREHGWQVRLWVDD 41 (370)
T ss_pred hcccchhHHHHHHHHHHHHHhCceeeeecCC
Confidence 4457999999999999998 69999998876
No 183
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=79.37 E-value=8.4 Score=35.43 Aligned_cols=93 Identities=23% Similarity=0.174 Sum_probs=55.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRV 85 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~ 85 (473)
|||+++..-+-| -.|++.|.++|+ |++-+..+....+.... .+...... . .+
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~~~~----~~~~~v~~-G-----~l------------ 52 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELLKPE----LPGLEVRV-G-----RL------------ 52 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhhccc----cCCceEEE-C-----CC------------
Confidence 567776654444 468999999999 66555554433332210 01122211 1 11
Q ss_pred HHHHhhHHHHHHHhcCCCCCcEEEeCCCcc------hHHHHHHHhCCCcEEE
Q 042753 86 LRELHYPALLDWFKSHPSPPVAILSDFFLG------WTQGLAAELGLPRVVF 131 (473)
Q Consensus 86 ~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~------~~~~~A~~~giP~v~~ 131 (473)
.-.+.+.+++++. ++|+||=-.+-+ -+..+|+++|||++.+
T Consensus 53 ---g~~~~l~~~l~~~--~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 53 ---GDEEGLAEFLREN--GIDAVIDATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred ---CCHHHHHHHHHhC--CCcEEEECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 0235677888888 999998333311 2457889999999997
No 184
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=79.04 E-value=22 Score=32.81 Aligned_cols=100 Identities=12% Similarity=-0.017 Sum_probs=57.6
Q ss_pred CChHHH----HHHHHHHHhC--CCeEEEEeCCCCh----hhhhhhccCCCCCCe-eEEEcCCCCCCCCCChhhHHHHHHH
Q 042753 17 GHIIPL----LDLTNRLLTL--GLNVTVLITQNNL----PLLDSLNANHPSTSL-QSLVLPQPKWPAGSPATRLLKFMRV 85 (473)
Q Consensus 17 GH~~p~----l~La~~L~~r--Gh~Vt~~~~~~~~----~~i~~~~~~~~~~~~-~f~~l~~~~~~~~~~~~~~~~~~~~ 85 (473)
.-+||+ +..|-.|+++ |.+||.++-.+.. ..++..++- |. +-+.+......+. +. +
T Consensus 32 ~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLAm----GaD~avli~d~~~~g~---D~---~--- 98 (256)
T PRK03359 32 AKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSR----GPDELIVVIDDQFEQA---LP---Q--- 98 (256)
T ss_pred cccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHHHHHc----CCCEEEEEecCcccCc---CH---H---
Confidence 346664 4556677775 3799999976433 335544321 12 1222222111111 10 0
Q ss_pred HHHHhhHHHHHHHhcCCCCCcEEEeCCCcc------hHHHHHHHhCCCcEEEecc
Q 042753 86 LRELHYPALLDWFKSHPSPPVAILSDFFLG------WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 86 ~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~------~~~~~A~~~giP~v~~~~~ 134 (473)
.....|.+.+++. .||+|++..-+. -+..+|+.+|+|++++...
T Consensus 99 ---~tA~~La~ai~~~--~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 99 ---QTASALAAAAQKA--GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred ---HHHHHHHHHHHHh--CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 2234455566667 899999866543 4678999999999997665
No 185
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=78.60 E-value=33 Score=29.75 Aligned_cols=106 Identities=17% Similarity=0.138 Sum_probs=58.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCe--EEEEeCCCChhh-hhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLN--VTVLITQNNLPL-LDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKF 82 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~--Vt~~~~~~~~~~-i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 82 (473)
|||+|+..+.. ..+..+.++|.+++|. |..+.+...... ...... .++....+... .+.
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~----~~~~~~~~~~~---~~~-------- 62 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK----NGIPAQVADEK---NFQ-------- 62 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH----TTHHEEEHHGG---GSS--------
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc----CCCCEEecccc---CCC--------
Confidence 68887755433 6677888999999997 554444332222 111110 12333222210 000
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecc
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~ 134 (473)
. .....+.+.+.+++. +||++|+-.+.. ....+-......++-++++
T Consensus 63 --~-~~~~~~~~~~~l~~~--~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 63 --P-RSENDEELLELLESL--NPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp --S-HHHHHHHHHHHHHHT--T-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred --c-hHhhhhHHHHHHHhh--ccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 0 113456778889999 999999876543 4445556666667777665
No 186
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=78.56 E-value=20 Score=33.13 Aligned_cols=96 Identities=20% Similarity=0.124 Sum_probs=50.3
Q ss_pred HHHHHHHHHhC---CCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCC--CCCCCChhhHHHHHHHHHHHhhHHHHH
Q 042753 22 LLDLTNRLLTL---GLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPK--WPAGSPATRLLKFMRVLRELHYPALLD 96 (473)
Q Consensus 22 ~l~La~~L~~r---Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 96 (473)
+.+|+++|.+. |++|+++.+...+.-....+. ....++...+.... .++-|.+ -..-.+..
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT--~~~pl~~~~~~~~~yav~GTPaD------------CV~lal~~ 81 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCIS--YTHPMMIAELGPRRFAAEGSPAD------------CVLAALYD 81 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCccccc--CCCCeEEEEeCCCeEEEcCchHH------------HHHHHHHH
Confidence 55677777663 479998888765433322221 11234444433100 0111111 11223334
Q ss_pred HHhcCCCCCcEEEe----------CCCcc---hHHHHHHHhCCCcEEEec
Q 042753 97 WFKSHPSPPVAILS----------DFFLG---WTQGLAAELGLPRVVFSP 133 (473)
Q Consensus 97 ~l~~~~~~pD~VV~----------D~~~~---~~~~~A~~~giP~v~~~~ 133 (473)
++... +||+||+ |.+++ .++.-|..+|||.|.++.
T Consensus 82 ~~~~~--~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 82 VMKDA--PPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred hcCCC--CCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 44334 8999996 44434 334556778999999875
No 187
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=78.20 E-value=3.2 Score=36.46 Aligned_cols=46 Identities=15% Similarity=0.074 Sum_probs=36.1
Q ss_pred CCCCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh
Q 042753 1 MLPAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP 46 (473)
Q Consensus 1 ~~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 46 (473)
|+-.++||++...++.|=+.-...++++|.++||+|.++.++...+
T Consensus 1 ~~l~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~ 46 (196)
T PRK08305 1 MSLKGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQT 46 (196)
T ss_pred CCCCCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHH
Confidence 5456788888777766655547899999999999999999986544
No 188
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=77.62 E-value=20 Score=33.36 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=34.0
Q ss_pred eEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcc
Q 042753 337 YVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPM 381 (473)
Q Consensus 337 v~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~ 381 (473)
+.+.+-++-.++|.+++. +||-.+. +-.||+.+|+|++++..
T Consensus 185 ~~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFGR 226 (269)
T ss_pred EEECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEecC
Confidence 445567788899999996 7777654 78999999999999864
No 189
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=77.20 E-value=41 Score=29.45 Aligned_cols=97 Identities=12% Similarity=0.064 Sum_probs=61.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCh------hhhhhhccCCCCCCeeEEEcCCCC-CCCCCChhh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNL------PLLDSLNANHPSTSLQSLVLPQPK-WPAGSPATR 78 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~------~~i~~~~~~~~~~~~~f~~l~~~~-~~~~~~~~~ 78 (473)
..|.++..++.|-....+.+|-+.+.+|+.|.++-.-... ..++.. +++.+....... ... . .
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l------~~v~~~~~g~~~~~~~-~---~ 92 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFG------GGVEFHVMGTGFTWET-Q---D 92 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcC------CCcEEEECCCCCcccC-C---C
Confidence 5688999999999999999999999999999998753221 112221 367777655321 111 0 0
Q ss_pred HHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc
Q 042753 79 LLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG 115 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~ 115 (473)
...-..... ..-....+.+.+. .+|+||.|.+..
T Consensus 93 ~~e~~~~~~-~~~~~a~~~l~~~--~ydlvVLDEi~~ 126 (191)
T PRK05986 93 RERDIAAAR-EGWEEAKRMLADE--SYDLVVLDELTY 126 (191)
T ss_pred cHHHHHHHH-HHHHHHHHHHhCC--CCCEEEEehhhH
Confidence 011112222 3334456667677 999999998744
No 190
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=77.19 E-value=33 Score=31.80 Aligned_cols=38 Identities=26% Similarity=0.162 Sum_probs=25.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP 46 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 46 (473)
|||+.-==+. |---+.+|+++|...| +|+++.+...+.
T Consensus 2 ~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqS 39 (266)
T PRK13934 2 KILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKS 39 (266)
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCc
Confidence 5665552222 2244778899998887 798888876543
No 191
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=77.12 E-value=35 Score=30.01 Aligned_cols=109 Identities=12% Similarity=0.042 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCChhh-hhhhccCCCCCCeeEE---EcCCCCCCCCCChhhHHHHHHHHHHHhhHHHH
Q 042753 20 IPLLDLTNRLLTLGLNVTVLITQNNLPL-LDSLNANHPSTSLQSL---VLPQPKWPAGSPATRLLKFMRVLRELHYPALL 95 (473)
Q Consensus 20 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~-i~~~~~~~~~~~~~f~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (473)
.-...+.+.+.++|-+|.|+++...... ++..... + +-.++ .++ ..+............+.......+.
T Consensus 43 ~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~-~--~~~~i~~rw~~----G~LTN~~~~~~~~~~~~~~~~~~~~ 115 (193)
T cd01425 43 RLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAER-T--GSFYVNGRWLG----GTLTNWKTIRKSIKRLKKLEKEKLE 115 (193)
T ss_pred HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHH-c--CCeeecCeecC----CcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3345556777778999999999854333 3322110 0 12221 112 1122222333333333211113333
Q ss_pred HHHhcC---CCCCcEEEeCCCcc--hHHHHHHHhCCCcEEEecch
Q 042753 96 DWFKSH---PSPPVAILSDFFLG--WTQGLAAELGLPRVVFSPSG 135 (473)
Q Consensus 96 ~~l~~~---~~~pD~VV~D~~~~--~~~~~A~~~giP~v~~~~~~ 135 (473)
+.+... ...||+||+-...- .+..=|.++|||+|.+..+.
T Consensus 116 k~~~g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 116 KNLGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred HhcccccccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 333222 22799988554322 67788999999999997664
No 192
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=76.83 E-value=45 Score=28.25 Aligned_cols=98 Identities=15% Similarity=0.012 Sum_probs=59.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC-----hhh-hhhhccCCCCCCeeEEEcCCCCCCCCCChhhH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN-----LPL-LDSLNANHPSTSLQSLVLPQPKWPAGSPATRL 79 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~-----~~~-i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 79 (473)
.-|.+++.++.|-....+.+|-+.+.+|+.|.|+-.-.. +.. +++. +++.+....... .... ...
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l------~~v~~~~~g~~~--~~~~-~~~ 73 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERL------PNIEIHRMGRGF--FWTT-END 73 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhC------CCcEEEECCCCC--ccCC-CCh
Confidence 346788999999999999999999999999999543211 111 2222 367777655321 0000 111
Q ss_pred HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc
Q 042753 80 LKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG 115 (473)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~ 115 (473)
..-..... ..-...++.+.+. .+|+||-|.+..
T Consensus 74 ~~~~~~a~-~~~~~a~~~~~~~--~~dLlVLDEi~~ 106 (159)
T cd00561 74 EEDIAAAA-EGWAFAKEAIASG--EYDLVILDEINY 106 (159)
T ss_pred HHHHHHHH-HHHHHHHHHHhcC--CCCEEEEechHh
Confidence 11111222 3334456667766 899999998744
No 193
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=76.30 E-value=23 Score=32.41 Aligned_cols=94 Identities=16% Similarity=0.075 Sum_probs=51.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCC-C-----CCCCCChhhHHHHHHHHHHHhhHHHH
Q 042753 22 LLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQP-K-----WPAGSPATRLLKFMRVLRELHYPALL 95 (473)
Q Consensus 22 ~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (473)
+.+|+++|.+.| +|+++.+...+.-....+. ....+++..++.. . .++-| . + ...-.+.
T Consensus 16 i~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait--~~~pl~~~~~~~~~~~~~~~v~GTP-a-------D----cv~~gl~ 80 (244)
T TIGR00087 16 IRALYQALKELG-EVTVVAPARQRSGTGHSLT--LFEPLRVGQVKVKNGAHIYAVDGTP-T-------D----CVILGIN 80 (244)
T ss_pred HHHHHHHHHhCC-CEEEEeCCCCccccccCcC--CCCCeEEEEeccCCCccEEEEcCcH-H-------H----HHHHHHH
Confidence 678899999888 8998888866544333221 1123455444321 0 01111 0 0 1112233
Q ss_pred HHHhcCCCCCcEEEeCC----------Ccc---hHHHHHHHhCCCcEEEec
Q 042753 96 DWFKSHPSPPVAILSDF----------FLG---WTQGLAAELGLPRVVFSP 133 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~----------~~~---~~~~~A~~~giP~v~~~~ 133 (473)
.++ .. +||+||+.. +.+ .++.-|..+|||.|.++.
T Consensus 81 ~l~-~~--~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 81 ELM-PE--VPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred Hhc-cC--CCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 333 34 799999643 333 345566778999999864
No 194
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=76.28 E-value=43 Score=29.72 Aligned_cols=109 Identities=15% Similarity=0.028 Sum_probs=64.5
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
|+=|++.-+|+.|-..-...||++|.+++|+|.-++...- ..|. .. +.++ ....
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~---------------~~i~-~D----Eslp------i~ke 54 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYL---------------RGIL-WD----ESLP------ILKE 54 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhh---------------hhee-cc----cccc------hHHH
Confidence 4556677799999999999999999999999876655311 1111 00 1111 1111
Q ss_pred HHHHHhhHHHHHHHhc-CCCCCcEEEeCCCcch------HHHHHHHhCCCcEEEecchHHHHHH
Q 042753 85 VLRELHYPALLDWFKS-HPSPPVAILSDFFLGW------TQGLAAELGLPRVVFSPSGAFALSV 141 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~-~~~~pD~VV~D~~~~~------~~~~A~~~giP~v~~~~~~~~~~~~ 141 (473)
.+++...+...++|-+ . +--+||+|...+. ....|.++..++..+....+.....
T Consensus 55 ~yres~~ks~~rlldSal--kn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~ 116 (261)
T COG4088 55 VYRESFLKSVERLLDSAL--KNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCL 116 (261)
T ss_pred HHHHHHHHHHHHHHHHHh--cceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHH
Confidence 2221222211112221 2 2258999988662 2467889999998887766554443
No 195
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=76.15 E-value=25 Score=32.48 Aligned_cols=44 Identities=16% Similarity=0.033 Sum_probs=34.8
Q ss_pred EEE-EEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhh
Q 042753 7 HIL-VYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSL 51 (473)
Q Consensus 7 ~Il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~ 51 (473)
||+ +..-|+.|.......+|..++++|++|.++..+.. +.+...
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~-~sl~~~ 45 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA-HSLSDS 45 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc-ccHHHH
Confidence 354 44477889999999999999999999999998765 344443
No 196
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=76.14 E-value=15 Score=36.01 Aligned_cols=99 Identities=16% Similarity=0.037 Sum_probs=63.9
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCC-CeEEEEeCC-CChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLG-LNVTVLITQ-NNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKF 82 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rG-h~Vt~~~~~-~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 82 (473)
|++|+++-.+..| ..+|+.|+++| ++|++++.. ...+++..... +++++..++.
T Consensus 1 m~~ilviGaG~Vg-----~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----~~v~~~~vD~--------------- 56 (389)
T COG1748 1 MMKILVIGAGGVG-----SVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----GKVEALQVDA--------------- 56 (389)
T ss_pred CCcEEEECCchhH-----HHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----ccceeEEecc---------------
Confidence 7888888765555 46899999999 999999976 44445544421 2466665552
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc---hHHHHHHHhCCCcEEEecchHH
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILSDFFLG---WTQGLAAELGLPRVVFSPSGAF 137 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~---~~~~~A~~~giP~v~~~~~~~~ 137 (473)
.-.+.+.++|++. |+||.=...+ ....+|-+.|++++-++.....
T Consensus 57 ------~d~~al~~li~~~----d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~~~ 104 (389)
T COG1748 57 ------ADVDALVALIKDF----DLVINAAPPFVDLTILKACIKTGVDYVDTSYYEEP 104 (389)
T ss_pred ------cChHHHHHHHhcC----CEEEEeCCchhhHHHHHHHHHhCCCEEEcccCCch
Confidence 1234566677643 7777554433 3345777888888876655443
No 197
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=75.99 E-value=25 Score=32.27 Aligned_cols=108 Identities=18% Similarity=0.093 Sum_probs=56.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCC--CCCCCChhhHHHHHH
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPK--WPAGSPATRLLKFMR 84 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~--~~~~~~~~~~~~~~~ 84 (473)
|||+.-==+. |---+.+|+++|.+. |+|+++.+...+.-....+. ....+++..+.... .++-| . +
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait--~~~pl~~~~~~~~~~~v~GTP-a-------D 69 (250)
T PRK00346 2 RILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSLT--LTRPLRVEKVDNGFYAVDGTP-T-------D 69 (250)
T ss_pred eEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCccccc--CCCCeEEEEecCCeEEECCcH-H-------H
Confidence 5666552221 223377889999988 79998888765443322211 11124444332100 01111 0 0
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeC----------CCcc---hHHHHHHHhCCCcEEEec
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSD----------FFLG---WTQGLAAELGLPRVVFSP 133 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D----------~~~~---~~~~~A~~~giP~v~~~~ 133 (473)
...-.+..++. . +||+||+. .+.+ .++.-|..+|||.|.++.
T Consensus 70 ----cV~~gl~~l~~-~--~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 70 ----CVHLALNGLLD-P--KPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred ----HHHHHHHhhcc-C--CCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 11223333332 4 89999964 3333 344556778999999865
No 198
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=75.98 E-value=22 Score=28.19 Aligned_cols=87 Identities=14% Similarity=0.116 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhHHHHHH
Q 042753 18 HIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPALLDW 97 (473)
Q Consensus 18 H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 97 (473)
+-.-+..+++.|.+.|++| ++++...+.+... ++....+.... +... .-.+.+.++
T Consensus 11 dk~~~~~~a~~l~~~G~~i--~aT~gTa~~L~~~-------gi~~~~v~~~~--~~~~-------------~~~~~i~~~ 66 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKL--YATEGTADFLLEN-------GIPVTPVAWPS--EEPQ-------------NDKPSLREL 66 (116)
T ss_pred cchhHHHHHHHHHHCCCEE--EEccHHHHHHHHc-------CCCceEeeecc--CCCC-------------CCchhHHHH
Confidence 4456789999999999987 3555565666654 34333221000 0000 001556777
Q ss_pred HhcCCCCCcEEEeCCC---------cchHHHHHHHhCCCcEE
Q 042753 98 FKSHPSPPVAILSDFF---------LGWTQGLAAELGLPRVV 130 (473)
Q Consensus 98 l~~~~~~pD~VV~D~~---------~~~~~~~A~~~giP~v~ 130 (473)
+++. ++|+||.-.. .+.....|-.+|||+++
T Consensus 67 i~~~--~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 67 LAEG--KIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred HHcC--CceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 8887 9999998543 12345778899999964
No 199
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=75.56 E-value=9 Score=32.81 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=31.7
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHH--H-HH-H-Hh-CCCcEEEecc
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQ--G-LA-A-EL-GLPRVVFSPS 134 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~--~-~A-~-~~-giP~v~~~~~ 134 (473)
.+.....+.+.++|++. +||+||+...+...+ . +- + .+ ++|.+.+.|-
T Consensus 72 ~~~~~~~~~l~~~l~~~--~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD 125 (169)
T PF06925_consen 72 ALSRLFARRLIRLLREF--QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTD 125 (169)
T ss_pred HHHHHHHHHHHHHHhhc--CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcC
Confidence 34445567899999999 999999998865333 1 11 2 23 4777766443
No 200
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=75.23 E-value=3 Score=31.90 Aligned_cols=83 Identities=14% Similarity=0.198 Sum_probs=49.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCC-CCChhhHHHHHHHHHHHhhHHHHHHHhc
Q 042753 22 LLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPA-GSPATRLLKFMRVLRELHYPALLDWFKS 100 (473)
Q Consensus 22 ~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 100 (473)
++++|+.|.+.||+ ++++......+++. |+....+-.....+ .+.. ...+.+++++
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~~-------Gi~~~~v~~~~~~~~~~~g--------------~~~i~~~i~~ 58 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKEH-------GIEVTEVVNKIGEGESPDG--------------RVQIMDLIKN 58 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHHT-------T--EEECCEEHSTG-GGTH--------------CHHHHHHHHT
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHHc-------CCCceeeeeecccCccCCc--------------hhHHHHHHHc
Confidence 57899999999976 45555566677766 56543332100000 0000 0167788888
Q ss_pred CCCCCcEEEeCCCcch---------HHHHHHHhCCCcE
Q 042753 101 HPSPPVAILSDFFLGW---------TQGLAAELGLPRV 129 (473)
Q Consensus 101 ~~~~pD~VV~D~~~~~---------~~~~A~~~giP~v 129 (473)
. +.|+||+...... -..+|..++||++
T Consensus 59 ~--~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 59 G--KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp T--SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred C--CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 8 9999998765331 1467788899875
No 201
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=75.05 E-value=27 Score=35.15 Aligned_cols=87 Identities=20% Similarity=0.269 Sum_probs=57.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
.+|+.++..+ .....+++.|.+.|-+|..+......+..+... .+ ... .. + +
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~~-----~~-~~~-~~----------D----~-- 362 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQKLP-----VE-TVV-IG----------D----L-- 362 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhCC-----cC-cEE-eC----------C----H--
Confidence 5677666532 467888999999999998888775543322210 01 000 00 0 0
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEE
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~ 131 (473)
..+.+++++. ++|++|.+.. .-.+|+++|||++.+
T Consensus 363 -------~~l~~~i~~~--~~dliig~s~---~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 363 -------EDLEDLACAA--GADLLITNSH---GRALAQRLALPLVRA 397 (432)
T ss_pred -------HHHHHHHhhc--CCCEEEECcc---hHHHHHHcCCCEEEe
Confidence 2446677778 9999998854 688999999999874
No 202
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=74.95 E-value=9.3 Score=38.32 Aligned_cols=93 Identities=17% Similarity=0.053 Sum_probs=56.6
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHH
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKF 82 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 82 (473)
+.++|||++-.+++-| +|+++|.+-++...+++.|.+....... .....+.+ .
T Consensus 2 ~~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~g~~~~~---------~~~~~~~~---~---------- 54 (426)
T PRK13789 2 QVKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNGGFPDDE---------LLPADSFS---I---------- 54 (426)
T ss_pred CCCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCchHHhccc---------cccccCcC---c----------
Confidence 3468999999988877 6899999988765665555442111100 00000100 0
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcch---HHHHHHHhCCCcEE
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILSDFFLGW---TQGLAAELGLPRVV 130 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~---~~~~A~~~giP~v~ 130 (473)
.=.+.+.++.++. ++|+||++.-... ....++++|+|+..
T Consensus 55 ------~d~~~l~~~a~~~--~iD~Vv~g~E~~l~~glad~~~~~Gip~~G 97 (426)
T PRK13789 55 ------LDKSSVQSFLKSN--PFDLIVVGPEDPLVAGFADWAAELGIPCFG 97 (426)
T ss_pred ------CCHHHHHHHHHHc--CCCEEEECCchHHHHHHHHHHHHcCCCcCC
Confidence 0113445567778 8999999766543 33566779999653
No 203
>PRK06849 hypothetical protein; Provisional
Probab=74.89 E-value=20 Score=35.51 Aligned_cols=80 Identities=14% Similarity=0.162 Sum_probs=48.7
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhh-hhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHH
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPL-LDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKF 82 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~-i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 82 (473)
.+++||+.-... .-.+.+++.|.++||+|+.+........ ..+.. -.|..+|.+.. .
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~-------d~~~~~p~p~~-------d---- 60 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHNAGHTVILADSLKYPLSRFSRAV-------DGFYTIPSPRW-------D---- 60 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhh-------hheEEeCCCCC-------C----
Confidence 468888874332 2589999999999999999987654211 11221 22334442211 0
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEeC
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILSD 111 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~D 111 (473)
.....+.+.+++++. ++|+||.-
T Consensus 61 ----~~~~~~~L~~i~~~~--~id~vIP~ 83 (389)
T PRK06849 61 ----PDAYIQALLSIVQRE--NIDLLIPT 83 (389)
T ss_pred ----HHHHHHHHHHHHHHc--CCCEEEEC
Confidence 013345666778888 88998854
No 204
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=74.36 E-value=16 Score=39.82 Aligned_cols=101 Identities=18% Similarity=0.186 Sum_probs=64.7
Q ss_pred HHhhhccCccceee---ccCch-hHHHHHhhCCe---EecCcccccchhhHHHHHHHhc-ceEEeccCCCCCCCHHHHHH
Q 042753 346 VAILRHKAVGAFLT---HCGWN-SVLEGVSAGVV---MLTWPMDADQYTNAQLLVDQLG-VGIRVGEGTRNIPESDELAR 417 (473)
Q Consensus 346 ~~lL~~~~v~~~It---HgG~~-s~~eal~~GvP---~l~~P~~~DQ~~na~rv~~~~G-~G~~l~~~~~~~~~~~~l~~ 417 (473)
.+++..+++ |+. .-|+| +.+|++++|.| ++++. +--..+.. +| -|+.++ ..+.+++++
T Consensus 370 ~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlS---e~~G~~~~----l~~~allVn-----P~D~~~lA~ 435 (797)
T PLN03063 370 CALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLS---EFAGAGQS----LGAGALLVN-----PWNITEVSS 435 (797)
T ss_pred HHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEee---CCcCchhh----hcCCeEEEC-----CCCHHHHHH
Confidence 356777887 553 34766 77899999999 34443 22222222 23 477777 468899999
Q ss_pred HHHHHhCCc-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhc
Q 042753 418 LLAQSVDGP-RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINELK 465 (473)
Q Consensus 418 ~i~~~l~~~-~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~ 465 (473)
+|.++|+.+ +.-+++.+++.+.++ .-+...-++.+++.+.+..
T Consensus 436 AI~~aL~m~~~er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 436 AIKEALNMSDEERETRHRHNFQYVK-----THSAQKWADDFMSELNDII 479 (797)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHHHHh
Confidence 999999843 344445555555543 2346677778887776653
No 205
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=74.29 E-value=38 Score=29.23 Aligned_cols=44 Identities=25% Similarity=0.202 Sum_probs=33.4
Q ss_pred HhhHHHHHHHhcCCCCCcEEEeCCCcc---hHHHHHHHhCCCcEEEecc
Q 042753 89 LHYPALLDWFKSHPSPPVAILSDFFLG---WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 89 ~~~~~l~~~l~~~~~~pD~VV~D~~~~---~~~~~A~~~giP~v~~~~~ 134 (473)
...+.+.+++++. +||+|++..... .+..+|.++|.|++.-+..
T Consensus 78 ~~a~~l~~~i~~~--~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv~~ 124 (181)
T cd01985 78 ATAKALAALIKKE--KPDLILAGATSIGKQLAPRVAALLGVPQISDVTK 124 (181)
T ss_pred HHHHHHHHHHHHh--CCCEEEECCcccccCHHHHHHHHhCCCcceeEEE
Confidence 3445666677777 899999887755 4679999999999885444
No 206
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=74.28 E-value=5.6 Score=31.82 Aligned_cols=38 Identities=13% Similarity=-0.044 Sum_probs=25.7
Q ss_pred cEEEEEcCCCCC---ChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 6 AHILVYPFPTSG---HIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 6 ~~Il~~~~~~~G---H~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
+||+|+.-|-.+ .-.-.++++.+-++|||+|.++....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 477777655443 34568899999999999999998864
No 207
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=74.22 E-value=20 Score=36.06 Aligned_cols=95 Identities=21% Similarity=0.247 Sum_probs=55.2
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhh----hhhhccCCCCCCeeEEEcCCCCCCCCCChhhHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPL----LDSLNANHPSTSLQSLVLPQPKWPAGSPATRLL 80 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~----i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 80 (473)
++|+.++.- -.-.+++++.|.+-|-+|..+.++..... +..... ..........+..
T Consensus 303 gkrv~i~g~-----~~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~v~~~------------- 363 (435)
T cd01974 303 GKKFALYGD-----PDFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQALLD-ASPYGAGAKVYPG------------- 363 (435)
T ss_pred CCEEEEEcC-----hHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHh-hcCCCCCcEEEEC-------------
Confidence 466766543 23477888888888999977776432222 222110 0000001100000
Q ss_pred HHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEE
Q 042753 81 KFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~ 131 (473)
.-...+.+.++.. +||++|.... ...+|+++|||++.+
T Consensus 364 --------~d~~e~~~~i~~~--~pDliiG~s~---~~~~a~~~gip~v~~ 401 (435)
T cd01974 364 --------KDLWHLRSLLFTE--PVDLLIGNTY---GKYIARDTDIPLVRF 401 (435)
T ss_pred --------CCHHHHHHHHhhc--CCCEEEECcc---HHHHHHHhCCCEEEe
Confidence 1123455667777 9999999864 788999999999875
No 208
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=74.20 E-value=18 Score=33.27 Aligned_cols=115 Identities=18% Similarity=0.052 Sum_probs=57.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRV 85 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~ 85 (473)
||||+.-==+. |---+.+|+++|.+.| +|+++.+...+.-....+. ....+++..+... .+......-..=.+
T Consensus 6 M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait--~~~pl~~~~~~~~--~~~~~y~v~GTPaD- 78 (257)
T PRK13932 6 PHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAMT--LGVPLRIKEYQKN--NRFFGYTVSGTPVD- 78 (257)
T ss_pred CEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCccccc--CCCCeEEEEEccC--CCceEEEEcCcHHH-
Confidence 57887662222 1123678899998888 7988888765433322211 1123444443311 00000000000000
Q ss_pred HHHHhhHHHHHHHhcCCCCCcEEEeC----------CCcc---hHHHHHHHhCCCcEEEec
Q 042753 86 LRELHYPALLDWFKSHPSPPVAILSD----------FFLG---WTQGLAAELGLPRVVFSP 133 (473)
Q Consensus 86 ~~~~~~~~l~~~l~~~~~~pD~VV~D----------~~~~---~~~~~A~~~giP~v~~~~ 133 (473)
...-.+..++ .. +||+||+. .+.+ .++.-|..+|||.|.++.
T Consensus 79 ---CV~lal~~~~-~~--~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 79 ---CIKVALSHIL-PE--KPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred ---HHHHHHHhhc-CC--CCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 1122333333 24 79999964 3333 344556778999999865
No 209
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=74.12 E-value=3.4 Score=35.94 Aligned_cols=44 Identities=27% Similarity=0.278 Sum_probs=36.3
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLD 49 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~ 49 (473)
|+||++...++.|=+. ...+.+.|.++|++|.++.++...+.+.
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 6899888887777665 7999999999999999999987655554
No 210
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=73.64 E-value=47 Score=31.81 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=25.1
Q ss_pred CCcEEEe-CCCcc-hHHHHHHHhCCCcEEEecchH
Q 042753 104 PPVAILS-DFFLG-WTQGLAAELGLPRVVFSPSGA 136 (473)
Q Consensus 104 ~pD~VV~-D~~~~-~~~~~A~~~giP~v~~~~~~~ 136 (473)
.||+||+ |...- .++.=|.++|||+|.+.-+.+
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 6898885 54433 678889999999999876643
No 211
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=73.56 E-value=28 Score=30.92 Aligned_cols=149 Identities=12% Similarity=0.015 Sum_probs=79.1
Q ss_pred CCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhh
Q 042753 271 RDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILR 350 (473)
Q Consensus 271 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~ 350 (473)
.+++++.|..|.... .-+..|.+.+..+.++-+... +++.+.....++....--.+...|.
T Consensus 8 ~gk~vlVvGgG~va~-------rk~~~Ll~~ga~VtVvsp~~~------------~~l~~l~~~~~i~~~~~~~~~~dl~ 68 (205)
T TIGR01470 8 EGRAVLVVGGGDVAL-------RKARLLLKAGAQLRVIAEELE------------SELTLLAEQGGITWLARCFDADILE 68 (205)
T ss_pred CCCeEEEECcCHHHH-------HHHHHHHHCCCEEEEEcCCCC------------HHHHHHHHcCCEEEEeCCCCHHHhC
Confidence 357888888877752 235666678887765544321 3333222223443322222344566
Q ss_pred ccCccceeeccCchhHHHH-----HhhCCeEecC--cccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHh
Q 042753 351 HKAVGAFLTHCGWNSVLEG-----VSAGVVMLTW--PMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSV 423 (473)
Q Consensus 351 ~~~v~~~ItHgG~~s~~ea-----l~~GvP~l~~--P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l 423 (473)
.+++ +|..-|...+.+. -..|+|+-++ |-..|= ..-..+. +=++-+.+..+...-.-+..|++.|++++
T Consensus 69 ~~~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f-~~pa~~~-~g~l~iaisT~G~sP~la~~lr~~ie~~l 144 (205)
T TIGR01470 69 GAFL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCSF-IFPSIVD-RSPVVVAISSGGAAPVLARLLRERIETLL 144 (205)
T ss_pred CcEE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeE-EEeeEEE-cCCEEEEEECCCCCcHHHHHHHHHHHHhc
Confidence 6775 8888887655444 4468888333 222221 1111222 20344444422234445567888888888
Q ss_pred CCc-HHHHHHHHHHHHHHHH
Q 042753 424 DGP-RRERLKARELSGAALS 442 (473)
Q Consensus 424 ~~~-~~~~~~a~~~~~~~~~ 442 (473)
... ..+.+.+.+++..+++
T Consensus 145 ~~~~~~~~~~~~~~R~~~k~ 164 (205)
T TIGR01470 145 PPSLGDLATLAATWRDAVKK 164 (205)
T ss_pred chhHHHHHHHHHHHHHHHHh
Confidence 643 4556666666666654
No 212
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=73.34 E-value=22 Score=34.92 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=28.7
Q ss_pred CCCccEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 2 LPAGAHILVYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 2 ~~~~~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
+|.+++|.++- .|..|. .+|+.|.++||+|+++....
T Consensus 95 ~~~~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 95 NPDLRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred CcccceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCCc
Confidence 35678888886 566664 68999999999999998643
No 213
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=73.23 E-value=11 Score=33.85 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCC--ChHHHHHHHHHHHh
Q 042753 5 GAHILVYPFPTSG--HIIPLLDLTNRLLT 31 (473)
Q Consensus 5 ~~~Il~~~~~~~G--H~~p~l~La~~L~~ 31 (473)
|+|||+.-|.-+| -+||...++++|..
T Consensus 1 m~~ILvTGF~PFgg~~~NPS~~~v~~L~~ 29 (222)
T PRK13195 1 MSKVLVTGFGPYGVTPVNPAQLTAEELDG 29 (222)
T ss_pred CCEEEEeeecCCCCCCcCchHHHHHhccc
Confidence 7888876655444 49999999999864
No 214
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=72.80 E-value=30 Score=29.45 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=21.6
Q ss_pred ccceeeccCch------hHHHHHhhCCeEecCc
Q 042753 354 VGAFLTHCGWN------SVLEGVSAGVVMLTWP 380 (473)
Q Consensus 354 v~~~ItHgG~~------s~~eal~~GvP~l~~P 380 (473)
.+.+++|+|-| .+.+|...++|||++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 33478887744 7889999999999995
No 215
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=72.71 E-value=23 Score=35.42 Aligned_cols=90 Identities=17% Similarity=0.069 Sum_probs=54.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC----ChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN----NLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLK 81 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~----~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~ 81 (473)
.|+.++..+.. ..++++.|.+-|-+|..+++.. ..+....... .+ .. ...... .
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~~~~~~~~-----~~-----~~----~v~~~~---d 343 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGAEDKRWLE-----ML-----GV----EVKYRA---S 343 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccHHHHHHHH-----hc-----CC----Cceecc---C
Confidence 46666666555 7888999999999999987763 2222221110 00 00 000000 1
Q ss_pred HHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEE
Q 042753 82 FMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~ 131 (473)
+. +.+ +.+++. +||++|.... +..+|+++|||++.+
T Consensus 344 l~--------~~~-~~l~~~--~pDllig~s~---~~~~A~k~gIP~vr~ 379 (422)
T TIGR02015 344 LE--------DDM-EAVLEF--EPDLAIGTTP---LVQFAKEHGIPALYF 379 (422)
T ss_pred HH--------HHH-HHHhhC--CCCEEEcCCc---chHHHHHcCCCEEEe
Confidence 11 111 455777 9999999843 677899999999996
No 216
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=72.62 E-value=9.2 Score=31.53 Aligned_cols=45 Identities=13% Similarity=0.042 Sum_probs=38.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDS 50 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 50 (473)
.+|++.+.++-+|-.-..-++..|.++|++|+++......+.+..
T Consensus 4 ~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~ 48 (137)
T PRK02261 4 KTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFID 48 (137)
T ss_pred CEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 679999999999999999999999999999999998765544433
No 217
>PRK14098 glycogen synthase; Provisional
Probab=72.37 E-value=6.2 Score=40.44 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=33.0
Q ss_pred CCCCccEEEEEcC---C---CCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 1 MLPAGAHILVYPF---P---TSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 1 ~~~~~~~Il~~~~---~---~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|..+|+||++++. | ..|=-...-+|.++|+++||+|.++.+.
T Consensus 1 ~~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 1 MSRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred CCCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 5667999998872 1 2355566788999999999999999984
No 218
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=72.17 E-value=18 Score=36.68 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=34.4
Q ss_pred ccEEEEEcCCCCCChHH------------HHHHHHHHHhCCCeEEEEeCCCC
Q 042753 5 GAHILVYPFPTSGHIIP------------LLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
++|||+...|++=.+.| -.+||+++..+|++||+++.+..
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~ 307 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD 307 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC
Confidence 67899998988888777 47899999999999999997743
No 219
>PRK04328 hypothetical protein; Provisional
Probab=71.76 E-value=67 Score=29.46 Aligned_cols=109 Identities=11% Similarity=-0.014 Sum_probs=60.6
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCC--------CCCCeeEEEcCCCCCCCCC
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANH--------PSTSLQSLVLPQPKWPAGS 74 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~--------~~~~~~f~~l~~~~~~~~~ 74 (473)
|.+.-+++.-.|+.|-..-.+.++.+-+++|+.+.|++.....+.+.+..... ....+.+............
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~~~l~iid~~~~~~~~~~ 100 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWDVRKYEEEGKFAIVDAFTGGIGSAA 100 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHcCCCHHHHhhcCCEEEEecccccccccc
Confidence 34566777888899998888888777668899999999987665543321100 0012333322111000000
Q ss_pred ChhhHH-HHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCc
Q 042753 75 PATRLL-KFMRVLRELHYPALLDWFKSHPSPPVAILSDFFL 114 (473)
Q Consensus 75 ~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~ 114 (473)
....+. .-..... .+...+.+.+++. ++++||.|.+.
T Consensus 101 ~~~~~~~~~~~~~~-~~~~~i~~~i~~~--~~~~vVIDSlt 138 (249)
T PRK04328 101 KREKYVVKDPDDVR-ELIDVLRQAIKDI--GAKRVVIDSVS 138 (249)
T ss_pred ccccccccCcccHH-HHHHHHHHHHHhh--CCCEEEEeChh
Confidence 000000 0001112 3445667777888 89999999974
No 220
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=71.21 E-value=17 Score=28.04 Aligned_cols=88 Identities=14% Similarity=0.018 Sum_probs=50.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRV 85 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~ 85 (473)
||||++-.+++-| +||+.|.+--.--.+++.|.|. -+... -....+..
T Consensus 1 MkVLviGsGgREH-----Aia~~l~~s~~v~~v~~aPGN~-G~~~~--------~~~~~~~~------------------ 48 (100)
T PF02844_consen 1 MKVLVIGSGGREH-----AIAWKLSQSPSVEEVYVAPGNP-GTAEL--------GKNVPIDI------------------ 48 (100)
T ss_dssp EEEEEEESSHHHH-----HHHHHHTTCTTEEEEEEEE--T-TGGGT--------SEEE-S-T------------------
T ss_pred CEEEEECCCHHHH-----HHHHHHhcCCCCCEEEEeCCCH-HHHhh--------ceecCCCC------------------
Confidence 6899998888888 6899998752222233323231 11111 11121110
Q ss_pred HHHHhhHHHHHHHhcCCCCCcEEEeCCCcc---hHHHHHHHhCCCcEE
Q 042753 86 LRELHYPALLDWFKSHPSPPVAILSDFFLG---WTQGLAAELGLPRVV 130 (473)
Q Consensus 86 ~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~---~~~~~A~~~giP~v~ 130 (473)
.-.+.+.++.++. ++|+||+.+-.+ ...+..++.|||+..
T Consensus 49 ---~d~~~l~~~a~~~--~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 49 ---TDPEELADFAKEN--KIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp ---T-HHHHHHHHHHT--TESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred ---CCHHHHHHHHHHc--CCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 1124566677788 999999998766 345777888999654
No 221
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=70.88 E-value=33 Score=34.76 Aligned_cols=90 Identities=19% Similarity=0.170 Sum_probs=54.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh----hhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP----LLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLL 80 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~----~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 80 (473)
++++.++..+ .-.+++++.|.+.|-+|..+.+..... .+.... ..+.-+ +..
T Consensus 326 Gkrv~i~~g~-----~~~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~~----~~~~~v--~~~------------- 381 (456)
T TIGR01283 326 GKKAAIYTGG-----VKSWSLVSALQDLGMEVVATGTQKGTEEDYARIRELM----GEGTVM--LDD------------- 381 (456)
T ss_pred CCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHc----CCCeEE--EeC-------------
Confidence 4667655433 344678888888899998887653322 222221 011111 110
Q ss_pred HHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEE
Q 042753 81 KFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~ 131 (473)
.-...+.+.+++. +||++|... ....+|+++|||++.+
T Consensus 382 --------~d~~e~~~~i~~~--~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 382 --------ANPRELLKLLLEY--KADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred --------CCHHHHHHHHhhc--CCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 1124556677888 999999873 3677889999999875
No 222
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=70.37 E-value=49 Score=27.43 Aligned_cols=99 Identities=13% Similarity=-0.020 Sum_probs=62.3
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHH
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLL 80 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 80 (473)
+.+++|++.. .-.+=.-++.+++.|.+. ||++ +.++.....+++. .|+....+-... .
T Consensus 2 ~~~~~v~lsv--~d~dK~~l~~~a~~l~~ll~Gf~l--~AT~gTa~~L~~~------~Gi~v~~vi~~~-~--------- 61 (142)
T PRK05234 2 PARKRIALIA--HDHKKDDLVAWVKAHKDLLEQHEL--YATGTTGGLIQEA------TGLDVTRLLSGP-L--------- 61 (142)
T ss_pred CcCcEEEEEE--eccchHHHHHHHHHHHHHhcCCEE--EEeChHHHHHHhc------cCCeeEEEEcCC-C---------
Confidence 4466776665 345567789999999999 9995 4555566666654 134443321000 0
Q ss_pred HHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCC--Ccc--------hHHHHHHHhCCCcEEE
Q 042753 81 KFMRVLRELHYPALLDWFKSHPSPPVAILSDF--FLG--------WTQGLAAELGLPRVVF 131 (473)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~--~~~--------~~~~~A~~~giP~v~~ 131 (473)
.-.+++.+.+++. +.|+||.-. ... .....|-.++||+++.
T Consensus 62 --------gg~~~i~~~I~~g--~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 62 --------GGDQQIGALIAEG--KIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred --------CCchhHHHHHHcC--ceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcC
Confidence 1225567778888 999999833 322 2235688889998774
No 223
>PLN00016 RNA-binding protein; Provisional
Probab=69.97 E-value=44 Score=32.84 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=26.6
Q ss_pred ccEEEEEc--CCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYP--FPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
+++|+++. .++.|.+ -..|+++|.++||+|+.++...
T Consensus 52 ~~~VLVt~~~~GatG~i--G~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFI--GFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred cceEEEEeccCCCceeE--hHHHHHHHHHCCCEEEEEecCC
Confidence 56787763 2344444 4578899999999999998754
No 224
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=69.95 E-value=5.4 Score=34.39 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
|||.++.-. |++ -..|+++...|||+||.++....
T Consensus 1 mKIaiIgAs--G~~--Gs~i~~EA~~RGHeVTAivRn~~ 35 (211)
T COG2910 1 MKIAIIGAS--GKA--GSRILKEALKRGHEVTAIVRNAS 35 (211)
T ss_pred CeEEEEecC--chh--HHHHHHHHHhCCCeeEEEEeChH
Confidence 466555433 322 24689999999999999997643
No 225
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=69.54 E-value=26 Score=33.13 Aligned_cols=55 Identities=15% Similarity=0.040 Sum_probs=40.4
Q ss_pred hccCccceeeccCchhHHHHHhh----CCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCC
Q 042753 350 RHKAVGAFLTHCGWNSVLEGVSA----GVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDG 425 (473)
Q Consensus 350 ~~~~v~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~ 425 (473)
..+++ +|+-||=||+++++.. ++|++.+- .|...= -...+.+++.++|++++++
T Consensus 62 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn-----------------~G~lGF---L~~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 62 ARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGIN-----------------HGRLGF---ITDIPLDDMQETLPPMLAG 119 (291)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEc-----------------CCCccc---cccCCHHHHHHHHHHHHcC
Confidence 34565 9999999999999774 67888772 232211 3357789999999999887
Q ss_pred c
Q 042753 426 P 426 (473)
Q Consensus 426 ~ 426 (473)
+
T Consensus 120 ~ 120 (291)
T PRK02155 120 N 120 (291)
T ss_pred C
Confidence 5
No 226
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=68.90 E-value=49 Score=31.34 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=56.8
Q ss_pred CCe-EeecCcc---HHHhhhccCccceeec--cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCC
Q 042753 335 RGY-VIRGWSQ---QVAILRHKAVGAFLTH--CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRN 408 (473)
Q Consensus 335 ~nv-~v~~~~p---q~~lL~~~~v~~~ItH--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 408 (473)
+++ +..+++| +..+|++|+++-|+++ =|.|++.-.++.|+|+++- .+-+.|....+ . |+-+-.+ .+
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~e-~-gv~Vlf~---~d 277 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLTE-Q-GLPVLFT---GD 277 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHHh-C-CCeEEec---CC
Confidence 443 3466666 5779999999766664 4899999999999999875 45555555444 5 7877667 67
Q ss_pred CCCHHHHHHHHHHH
Q 042753 409 IPESDELARLLAQS 422 (473)
Q Consensus 409 ~~~~~~l~~~i~~~ 422 (473)
.++...+.++=+++
T Consensus 278 ~L~~~~v~e~~rql 291 (322)
T PRK02797 278 DLDEDIVREAQRQL 291 (322)
T ss_pred cccHHHHHHHHHHH
Confidence 78777776654433
No 227
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=68.71 E-value=30 Score=34.73 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEE
Q 042753 92 PALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 92 ~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~ 131 (473)
.++.+.+++. +||+||.+.. ...+|+++|+|++.+
T Consensus 361 ~el~~~i~~~--~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 361 WDLESLAKEE--PVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred HHHHHHhhcc--CCCEEEECch---hHHHHHhcCCCEEEe
Confidence 3456678888 9999999965 678899999999874
No 228
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=68.58 E-value=5.6 Score=34.65 Aligned_cols=45 Identities=20% Similarity=0.104 Sum_probs=37.0
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCCCChhhhhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLT-LGLNVTVLITQNNLPLLDS 50 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~i~~ 50 (473)
|+||++...++.| ..=...++++|.+ .||+|.++.++.....+..
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 7899888887777 5558999999999 5999999999977666654
No 229
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=68.31 E-value=76 Score=32.48 Aligned_cols=96 Identities=10% Similarity=0.002 Sum_probs=63.2
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCC---C-----CCCeeEEEcCCCCCCCCC
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANH---P-----STSLQSLVLPQPKWPAGS 74 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~---~-----~~~~~f~~l~~~~~~~~~ 74 (473)
|...-+++.-.|+.|--.-.+.++.+.+++|..|.|++.++..+.+.....+. . ...+.+.... |
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~-------p 333 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAY-------P 333 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcc-------c
Confidence 34566788889999999999999999999999999999988766554331100 0 0013332221 0
Q ss_pred ChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc
Q 042753 75 PATRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG 115 (473)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~ 115 (473)
... ... .....+.+.+++. ++|+||.|.+..
T Consensus 334 ~~~-------~~~-~~~~~i~~~i~~~--~~~~vvIDsi~~ 364 (484)
T TIGR02655 334 ESA-------GLE-DHLQIIKSEIADF--KPARIAIDSLSA 364 (484)
T ss_pred ccC-------ChH-HHHHHHHHHHHHc--CCCEEEEcCHHH
Confidence 000 011 3445566777888 999999998864
No 230
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=67.93 E-value=47 Score=31.72 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=37.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhh
Q 042753 8 ILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLL 48 (473)
Q Consensus 8 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 48 (473)
|+|+-..|.|-..-.-.||+.|.+.|+.|.++..+.|++-.
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaA 182 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAA 182 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHH
Confidence 46777999999999999999999999999999999987643
No 231
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=67.82 E-value=67 Score=31.54 Aligned_cols=43 Identities=23% Similarity=0.223 Sum_probs=35.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLL 48 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 48 (473)
.=+++.--|+.|--.-++.++..+.+.|..|.|++.++..+.+
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 3346677889999999999999999999999999987655444
No 232
>PRK06988 putative formyltransferase; Provisional
Probab=67.54 E-value=31 Score=32.96 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=25.0
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|+||+|+..+. -.+...++|.++||+|..+.+..
T Consensus 2 ~mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~~ 35 (312)
T PRK06988 2 KPRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTHE 35 (312)
T ss_pred CcEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcCC
Confidence 57999885543 34566788888999998877753
No 233
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=67.46 E-value=14 Score=27.13 Aligned_cols=35 Identities=17% Similarity=0.055 Sum_probs=30.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLI 40 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 40 (473)
+-++++..+...|...+..+|+.|.++|+.|...=
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 56788888888999999999999999999987543
No 234
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=67.18 E-value=6.9 Score=36.15 Aligned_cols=47 Identities=21% Similarity=0.367 Sum_probs=40.5
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSL 51 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~ 51 (473)
...++|+-.||.|-..=..+||.+|.++|+.|+|++.++....++..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 45788888999999999999999999889999999999776666654
No 235
>PRK05595 replicative DNA helicase; Provisional
Probab=67.10 E-value=47 Score=33.54 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=32.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCCCChhh
Q 042753 8 ILVYPFPTSGHIIPLLDLTNRLL-TLGLNVTVLITQNNLPL 47 (473)
Q Consensus 8 Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~ 47 (473)
|++-..|+.|-..-.+.+|..++ ++|+.|.|++.+.....
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~ 244 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQ 244 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHH
Confidence 45666889999999999998876 56999999998865443
No 236
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.89 E-value=26 Score=34.14 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=36.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhh
Q 042753 8 ILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLD 49 (473)
Q Consensus 8 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~ 49 (473)
|+|+-.-+.|-..-+-.+|..+.++|+.+-+++.+.|++-..
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAf 145 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAF 145 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchH
Confidence 456667788999999999999999999999999998875443
No 237
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=66.88 E-value=5.5 Score=34.78 Aligned_cols=39 Identities=26% Similarity=0.304 Sum_probs=27.4
Q ss_pred ccEEEEEcCCCCCChHH------------HHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIP------------LLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
.+|||+...|++-++.| -..||+++..+||+||++..+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 45667766666655544 5789999999999999999984
No 238
>PRK10867 signal recognition particle protein; Provisional
Probab=66.53 E-value=30 Score=34.66 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=35.8
Q ss_pred cEE-EEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCChhh
Q 042753 6 AHI-LVYPFPTSGHIIPLLDLTNRLLTL-GLNVTVLITQNNLPL 47 (473)
Q Consensus 6 ~~I-l~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~ 47 (473)
++| +++-.+|.|-..-...||..|.++ |+.|.+++.+.++..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 455 566678889999999999999999 999999999877654
No 239
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=66.44 E-value=17 Score=28.80 Aligned_cols=42 Identities=24% Similarity=0.219 Sum_probs=35.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhh
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLL 48 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 48 (473)
|+++...+..-|-.-...++..|.++||+|.++......+.+
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l 43 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEEL 43 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHH
Confidence 688889999999999999999999999999999766443333
No 240
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=66.15 E-value=32 Score=29.10 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=24.3
Q ss_pred CCCCCChHHHHHHHHHHHhCCCeEEEE
Q 042753 13 FPTSGHIIPLLDLTNRLLTLGLNVTVL 39 (473)
Q Consensus 13 ~~~~GH~~p~l~La~~L~~rGh~Vt~~ 39 (473)
.++.|-..-.+.|++.|.++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 566789999999999999999999886
No 241
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=66.14 E-value=45 Score=33.30 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEE
Q 042753 92 PALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 92 ~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~ 131 (473)
.++.+.++.. +||++|.... ...+|+++|||++..
T Consensus 346 ~e~~~~i~~~--~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 346 RELKKLLKEK--KADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHHhhc--CCCEEEECCc---chhhHHhcCCCEEEc
Confidence 3456677888 9999999944 568899999999854
No 242
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=66.07 E-value=87 Score=26.98 Aligned_cols=96 Identities=14% Similarity=0.108 Sum_probs=57.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC---C-CC-h-hhhhhhccCCCCCCeeEEEcCCCC-CCCCCChhh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLIT---Q-NN-L-PLLDSLNANHPSTSLQSLVLPQPK-WPAGSPATR 78 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~---~-~~-~-~~i~~~~~~~~~~~~~f~~l~~~~-~~~~~~~~~ 78 (473)
.-|.++...+.|-..-.+.+|-+.+.+|+.|.++-. . .. + ..++.. ++.|....... +..-+..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~-------~~~~~~~g~g~~~~~~~~~-- 76 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH-------GVEFQVMGTGFTWETQNRE-- 76 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc-------CcEEEECCCCCeecCCCcH--
Confidence 457788889999999999999999999999976632 2 11 1 112221 46666554210 0010111
Q ss_pred HHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc
Q 042753 79 LLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG 115 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~ 115 (473)
.-..... ..-....+.+.+. .+|+||.|....
T Consensus 77 --~~~~~~~-~~~~~a~~~l~~~--~~DlvVLDEi~~ 108 (173)
T TIGR00708 77 --ADTAIAK-AAWQHAKEMLADP--ELDLVLLDELTY 108 (173)
T ss_pred --HHHHHHH-HHHHHHHHHHhcC--CCCEEEehhhHH
Confidence 1111222 3334456666667 899999998743
No 243
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=65.51 E-value=28 Score=37.71 Aligned_cols=112 Identities=13% Similarity=0.059 Sum_probs=67.2
Q ss_pred EeecCccHHH---hhhccCccceeec---cC-chhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCC
Q 042753 338 VIRGWSQQVA---ILRHKAVGAFLTH---CG-WNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIP 410 (473)
Q Consensus 338 ~v~~~~pq~~---lL~~~~v~~~ItH---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~ 410 (473)
+..+++++.+ ++..+++ |+.- -| ..++.|++++|+|-...|+..+--.-+.-+ .-|+.++ .-
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv~-----P~ 413 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLVN-----PN 413 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEEC-----CC
Confidence 3456777765 5666887 4443 24 458899999976522222222211112212 2266666 35
Q ss_pred CHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhc
Q 042753 411 ESDELARLLAQSVDGP-RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINELK 465 (473)
Q Consensus 411 ~~~~l~~~i~~~l~~~-~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~ 465 (473)
+.+++.++|.++|+.+ ++.+++.+++.+.++ .-+.+.-++.+++.+.+..
T Consensus 414 d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~~ 464 (726)
T PRK14501 414 DIEGIAAAIKRALEMPEEEQRERMQAMQERLR-----RYDVHKWASDFLDELREAA 464 (726)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHH
Confidence 7899999999999864 244444444444442 3567788888888887764
No 244
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=65.31 E-value=40 Score=34.43 Aligned_cols=89 Identities=19% Similarity=0.267 Sum_probs=54.2
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh----hhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP----LLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLL 80 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~----~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 80 (473)
++|+.++..+ .-..++++.|.+.|-+|..+.+..... .+..... ++..+. ..
T Consensus 324 Gk~vaI~~~~-----~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~~----~~~~v~--~d------------- 379 (475)
T PRK14478 324 GKRVLLYTGG-----VKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELMG----PDAHMI--DD------------- 379 (475)
T ss_pred CCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHcC----CCcEEE--eC-------------
Confidence 4677665433 345578888888999998887664322 2222210 111111 10
Q ss_pred HHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEE
Q 042753 81 KFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVV 130 (473)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~ 130 (473)
.-..++.+.++.. +||++|.+ .....+|+++|||++-
T Consensus 380 --------~~~~e~~~~i~~~--~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 380 --------ANPRELYKMLKEA--KADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred --------CCHHHHHHHHhhc--CCCEEEec---CchhhhhhhcCCCEEE
Confidence 1113344556667 99999998 4477899999999974
No 245
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=65.30 E-value=17 Score=32.51 Aligned_cols=68 Identities=21% Similarity=0.190 Sum_probs=42.7
Q ss_pred ccEEEEEcCCCCC--ChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHH
Q 042753 5 GAHILVYPFPTSG--HIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKF 82 (473)
Q Consensus 5 ~~~Il~~~~~~~G--H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 82 (473)
|+|||+.-|.-+| ..||...++++|.... +... .+....+|-.
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~~~--------------~~~~-------~v~~~~LPV~-------------- 45 (211)
T PRK13196 1 MPTLLLTGFEPFHTHPVNPSAQAAQALNGEQ--------------AGAL-------RVHSALLPVE-------------- 45 (211)
T ss_pred CCEEEEEeecCCCCCCCCcHHHHHHhccccc--------------CCCc-------EEEEEEeCCC--------------
Confidence 7899866655443 5999999999996641 0001 2444445521
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEeCCC
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILSDFF 113 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~ 113 (473)
+. ...+.+.+++++. +||+||+=-.
T Consensus 46 ~~----~~~~~l~~~~~~~--~Pd~vi~~G~ 70 (211)
T PRK13196 46 PR----AAMAALSRLLDEL--QPSAVLLTGL 70 (211)
T ss_pred hh----HHHHHHHHHHHHh--CCCEEEEecc
Confidence 11 3345677778888 9999997543
No 246
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=65.00 E-value=83 Score=26.36 Aligned_cols=139 Identities=19% Similarity=0.208 Sum_probs=67.8
Q ss_pred cEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccC
Q 042753 274 SVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKA 353 (473)
Q Consensus 274 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~ 353 (473)
|.|-|-+||.. +....+++...|++.+..+-..+-.. .+.|+.+. +++...+- ..++
T Consensus 1 p~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa---------HR~p~~l~-----------~~~~~~~~-~~~~ 57 (150)
T PF00731_consen 1 PKVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA---------HRTPERLL-----------EFVKEYEA-RGAD 57 (150)
T ss_dssp -EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T---------TTSHHHHH-----------HHHHHTTT-TTES
T ss_pred CeEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec---------cCCHHHHH-----------HHHHHhcc-CCCE
Confidence 34666677765 67788889999999887665555443 33454332 22211110 1233
Q ss_pred ccceeeccCchhHHHHH---hhCCeEecCcccccchhhHHHHH-----HHhcceEEeccCCC-CCCCHHHHHHHHHHHhC
Q 042753 354 VGAFLTHCGWNSVLEGV---SAGVVMLTWPMDADQYTNAQLLV-----DQLGVGIRVGEGTR-NIPESDELARLLAQSVD 424 (473)
Q Consensus 354 v~~~ItHgG~~s~~eal---~~GvP~l~~P~~~DQ~~na~rv~-----~~~G~G~~l~~~~~-~~~~~~~l~~~i~~~l~ 424 (473)
+ ||.=.|...-+-+. ..-.|+|.+|....+.....-+. -. |+++..-- . +..++..+...|-. +.
T Consensus 58 v--iIa~AG~~a~Lpgvva~~t~~PVIgvP~~~~~~~g~d~l~S~vqMp~-g~pvatv~--i~~~~nAA~~A~~ILa-~~ 131 (150)
T PF00731_consen 58 V--IIAVAGMSAALPGVVASLTTLPVIGVPVSSGYLGGLDSLLSIVQMPS-GVPVATVG--INNGFNAALLAARILA-LK 131 (150)
T ss_dssp E--EEEEEESS--HHHHHHHHSSS-EEEEEE-STTTTTHHHHHHHHT--T-TS--EE-S--STHHHHHHHHHHHHHH-TT
T ss_pred E--EEEECCCcccchhhheeccCCCEEEeecCcccccCcccHHHHHhccC-CCCceEEE--ccCchHHHHHHHHHHh-cC
Confidence 3 77776654333322 22789999999877553222111 12 55443320 1 12223333322222 23
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 042753 425 GPRRERLKARELSGAALS 442 (473)
Q Consensus 425 ~~~~~~~~a~~~~~~~~~ 442 (473)
|+ +++++.++.+++.++
T Consensus 132 d~-~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 132 DP-ELREKLRAYREKMKE 148 (150)
T ss_dssp -H-HHHHHHHHHHHHHHH
T ss_pred CH-HHHHHHHHHHHHHHc
Confidence 54 888888888877753
No 247
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=64.94 E-value=1.4e+02 Score=28.90 Aligned_cols=84 Identities=13% Similarity=0.125 Sum_probs=62.0
Q ss_pred cCCCeE-eecCcc---HHHhhhccCccceeec--cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCC
Q 042753 333 AGRGYV-IRGWSQ---QVAILRHKAVGAFLTH--CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGT 406 (473)
Q Consensus 333 ~~~nv~-v~~~~p---q~~lL~~~~v~~~ItH--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 406 (473)
...++. +.+++| +.++|..|+++-|.+. =|.|++.-.|+.|+|+++- .+-+.+-...+ . |+-+...
T Consensus 243 ~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l~~-~-~ipVlf~--- 314 (360)
T PF07429_consen 243 GAENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDLKE-Q-GIPVLFY--- 314 (360)
T ss_pred CccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHHHh-C-CCeEEec---
Confidence 335654 467887 4669999999655553 5899999999999999875 44444444443 6 8877776
Q ss_pred CCCCCHHHHHHHHHHHhC
Q 042753 407 RNIPESDELARLLAQSVD 424 (473)
Q Consensus 407 ~~~~~~~~l~~~i~~~l~ 424 (473)
.++++.+.|+++=+++..
T Consensus 315 ~d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 315 GDELDEALVREAQRQLAN 332 (360)
T ss_pred cccCCHHHHHHHHHHHhh
Confidence 789999999988877764
No 248
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=64.68 E-value=68 Score=27.52 Aligned_cols=98 Identities=16% Similarity=0.179 Sum_probs=61.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCC-hhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhHHHHHHHhc
Q 042753 22 LLDLTNRLLTLGLNVTVLITQNN-LPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPALLDWFKS 100 (473)
Q Consensus 22 ~l~La~~L~~rGh~Vt~~~~~~~-~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 100 (473)
+..|.+...++|..|.+++..+- .+.+.+.+. ...+++++.....+.. .....+.+.+.|..
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~-~~yP~l~ivg~~~g~f----------------~~~~~~~i~~~I~~ 99 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLR-RRYPGLRIVGYHHGYF----------------DEEEEEAIINRINA 99 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH-HHCCCeEEEEecCCCC----------------ChhhHHHHHHHHHH
Confidence 45566666678999999998642 222222211 1135787775432110 11344566677777
Q ss_pred CCCCCcEEEeCCCcc----hHHHHHHHhCCCcEEEecchHHHH
Q 042753 101 HPSPPVAILSDFFLG----WTQGLAAELGLPRVVFSPSGAFAL 139 (473)
Q Consensus 101 ~~~~pD~VV~D~~~~----~~~~~A~~~giP~v~~~~~~~~~~ 139 (473)
. +||+|++-.-++ |.....+.++.+ +.++...++.+
T Consensus 100 ~--~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~d~ 139 (172)
T PF03808_consen 100 S--GPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAFDF 139 (172)
T ss_pred c--CCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchhhh
Confidence 8 999999998877 566667777887 66666666543
No 249
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=63.59 E-value=78 Score=27.62 Aligned_cols=97 Identities=13% Similarity=0.064 Sum_probs=57.9
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC----C-hhhhhhhccCCCCCCeeEEEcCCC-CCCCCCChhhHHH
Q 042753 8 ILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN----N-LPLLDSLNANHPSTSLQSLVLPQP-KWPAGSPATRLLK 81 (473)
Q Consensus 8 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~----~-~~~i~~~~~~~~~~~~~f~~l~~~-~~~~~~~~~~~~~ 81 (473)
|.+++..+.|-....+.+|-+-.-+|.+|.++-.-. + +....... +.++.|...+.- .++.-....
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~----~~~v~~~~~~~g~tw~~~~~~~---- 102 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKF----GLGVEFHGMGEGFTWETQDREA---- 102 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhh----ccceeEEecCCceeCCCcCcHH----
Confidence 668888899998888888877777888888876421 1 12222111 135777766622 111111111
Q ss_pred HHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc
Q 042753 82 FMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG 115 (473)
Q Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~ 115 (473)
-..... ..-+...+.+++. ++|+||.|.+.+
T Consensus 103 d~~aa~-~~w~~a~~~l~~~--~ydlviLDEl~~ 133 (198)
T COG2109 103 DIAAAK-AGWEHAKEALADG--KYDLVILDELNY 133 (198)
T ss_pred HHHHHH-HHHHHHHHHHhCC--CCCEEEEehhhH
Confidence 112333 3344556778887 999999998754
No 250
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=63.55 E-value=45 Score=33.36 Aligned_cols=91 Identities=13% Similarity=0.093 Sum_probs=52.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC-h---hhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN-L---PLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLK 81 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~-~---~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~ 81 (473)
.|++++..+.. .+.+++.|.+-|-+|..++++.. . +....... ..+..+ . . ...
T Consensus 281 gkv~v~g~~~~-----~~~la~~L~elGmevv~~~t~~~~~~~~~~~~~~l~---~~~~~v---~------~--~~~--- 338 (416)
T cd01980 281 GRVLVSGYEGN-----ELLVARLLIESGAEVPYVSTSIPKTSLSAPDYEWLS---ALGVEV---R------Y--RKS--- 338 (416)
T ss_pred ceEEEECCCch-----hHHHHHHHHHcCCEEEEEecCCCChhhhHHHHHHHH---hcCCcc---c------c--CCC---
Confidence 46655544433 56689999999999999998732 1 11111100 001000 0 0 000
Q ss_pred HHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEe
Q 042753 82 FMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFS 132 (473)
Q Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~ 132 (473)
+ ....+.++.. +||++|.. +.+..+|+++|||.+.+.
T Consensus 339 ~---------~~~~~~~~~~--~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 339 L---------EDDIAAVEEY--RPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred H---------HHHHHHHhhc--CCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 0 0112445567 99999988 347789999999998853
No 251
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=63.31 E-value=55 Score=30.51 Aligned_cols=103 Identities=16% Similarity=0.044 Sum_probs=58.3
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
|+=|+++-.|+.|-..-...|.+.|.+.|.+|.+++..... +... . |. ..... .
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~--------~-y~-----------~~~~E----k 54 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRN--------D-YA-----------DSKKE----K 54 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTS--------S-S-------------GGGH----H
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchh--------h-hh-----------chhhh----H
Confidence 55678888999999999999999999999999999854221 1111 1 11 01111 2
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc------hHHHHHHHhCCCcEEEecchHH
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSDFFLG------WTQGLAAELGLPRVVFSPSGAF 137 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~------~~~~~A~~~giP~v~~~~~~~~ 137 (473)
..+..+...+.+.+.. -++||+|...+ ....+|+++++++..++.....
T Consensus 55 ~~R~~l~s~v~r~ls~----~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~ 109 (270)
T PF08433_consen 55 EARGSLKSAVERALSK----DTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPL 109 (270)
T ss_dssp HHHHHHHHHHHHHHTT-----SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--H
T ss_pred HHHHHHHHHHHHhhcc----CeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCH
Confidence 2222344556666643 38999999876 2358999999999887665443
No 252
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.78 E-value=13 Score=34.53 Aligned_cols=51 Identities=14% Similarity=0.046 Sum_probs=38.4
Q ss_pred ceeeccCchhHHHHHh------hCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc
Q 042753 356 AFLTHCGWNSVLEGVS------AGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 356 ~~ItHgG~~s~~eal~------~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~ 426 (473)
++|+-||=||++.|+. .++|++.+- .|...= -.+.+.+++.++++++++++
T Consensus 38 lvi~iGGDGT~L~a~~~~~~~~~~iPilGIN-----------------~G~lGF---L~~~~~~~~~~~l~~i~~g~ 94 (265)
T PRK04885 38 IVISVGGDGTLLSAFHRYENQLDKVRFVGVH-----------------TGHLGF---YTDWRPFEVDKLVIALAKDP 94 (265)
T ss_pred EEEEECCcHHHHHHHHHhcccCCCCeEEEEe-----------------CCCcee---cccCCHHHHHHHHHHHHcCC
Confidence 4999999999999976 488988882 332211 23567888999999999875
No 253
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=62.50 E-value=97 Score=26.33 Aligned_cols=44 Identities=23% Similarity=0.142 Sum_probs=34.6
Q ss_pred HhhHHHHHHHhcCCCCCcEEEeCCCcc---hHHHHHHHhCCCcEEEecc
Q 042753 89 LHYPALLDWFKSHPSPPVAILSDFFLG---WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 89 ~~~~~l~~~l~~~~~~pD~VV~D~~~~---~~~~~A~~~giP~v~~~~~ 134 (473)
.....+.+++++. +||+|++..... .+..+|.++|.|++.-++.
T Consensus 70 ~~a~al~~~i~~~--~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~ 116 (168)
T cd01715 70 PYAPALVALAKKE--KPSHILAGATSFGKDLAPRVAAKLDVGLISDVTA 116 (168)
T ss_pred HHHHHHHHHHHhc--CCCEEEECCCccccchHHHHHHHhCCCceeeEEE
Confidence 4456677778888 899999887755 5679999999999986655
No 254
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=62.36 E-value=42 Score=33.99 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=30.8
Q ss_pred ccEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|++|++.. ..+.|-..-...|++.|+++|++|..+-+.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~G 41 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVG 41 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecC
Confidence 66776665 455699999999999999999998887653
No 255
>PRK11823 DNA repair protein RadA; Provisional
Probab=61.78 E-value=85 Score=31.73 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=36.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLL 48 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 48 (473)
..-+++.-.|+.|-..-++.++..+.++|+.|.|++.++..+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI 123 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH
Confidence 34456777889999999999999999899999999998765544
No 256
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=61.71 E-value=96 Score=29.76 Aligned_cols=99 Identities=18% Similarity=0.149 Sum_probs=58.6
Q ss_pred cEEEEEcCCCCC-----ChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHH
Q 042753 6 AHILVYPFPTSG-----HIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLL 80 (473)
Q Consensus 6 ~~Il~~~~~~~G-----H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 80 (473)
.-|++.|+.+.| ...-+..|++.|.++|.+|.++++++..+..+..... . .-....+ ...
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~-~--~~~~~~l--------~g~---- 239 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEAL-L--PGELRNL--------AGE---- 239 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHh-C--CcccccC--------CCC----
Confidence 345566544333 1235789999999889999999888665544433110 0 0001111 101
Q ss_pred HHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEec
Q 042753 81 KFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSP 133 (473)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~ 133 (473)
.-..++..+++ +-|++|+.- ++...+|..+|+|+|.++.
T Consensus 240 --------~sL~el~ali~----~a~l~I~~D--SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 240 --------TSLDEAVDLIA----LAKAVVTND--SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred --------CCHHHHHHHHH----hCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 11234455555 449999654 4567999999999999854
No 257
>PRK07206 hypothetical protein; Provisional
Probab=61.59 E-value=30 Score=34.50 Aligned_cols=93 Identities=13% Similarity=0.011 Sum_probs=50.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
|++|+++-.... ...+++++.++|+++..++........-.. .+...... .....
T Consensus 2 ~k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~-------~~~~~~~~----~~i~~--------- 56 (416)
T PRK07206 2 MKKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSCLLDPYYYA-------SFDTSDFI----EVIIN--------- 56 (416)
T ss_pred CCeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCCCCchhhhc-------ccCcccch----hhhcC---------
Confidence 456766665332 346899999999999888876432110000 01100000 00000
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeC--CCcchHHHHHHHhCCCc
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSD--FFLGWTQGLAAELGLPR 128 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D--~~~~~~~~~A~~~giP~ 128 (473)
.-.+.+.+++++. ++|.||.. .....+..+++.+|+|+
T Consensus 57 ----~~~~~l~~~~~~~--~~d~vi~~~e~~~~~~a~l~~~l~l~~ 96 (416)
T PRK07206 57 ----GDIDDLVEFLRKL--GPEAIIAGAESGVELADRLAEILTPQY 96 (416)
T ss_pred ----CCHHHHHHHHHHc--CCCEEEECCCccHHHHHHHHHhcCCCc
Confidence 1123555667778 89999954 22224556778888883
No 258
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=61.24 E-value=42 Score=33.08 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=55.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRV 85 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~ 85 (473)
+=||+---|+.|--.=++.++..|+++| .|.|++.++..+.++-- ...+..+. +. ++-.
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklR----------A~RL~~~~-~~---------l~l~ 152 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLR----------ADRLGLPT-NN---------LYLL 152 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHH----------HHHhCCCc-cc---------eEEe
Confidence 3456666899999999999999999999 99999999766554321 11111100 00 0000
Q ss_pred HHHHhhHHHHHHHhcCCCCCcEEEeCCCc
Q 042753 86 LRELHYPALLDWFKSHPSPPVAILSDFFL 114 (473)
Q Consensus 86 ~~~~~~~~l~~~l~~~~~~pD~VV~D~~~ 114 (473)
.+ .-.+.+.+.+++. +||++|.|...
T Consensus 153 aE-t~~e~I~~~l~~~--~p~lvVIDSIQ 178 (456)
T COG1066 153 AE-TNLEDIIAELEQE--KPDLVVIDSIQ 178 (456)
T ss_pred hh-cCHHHHHHHHHhc--CCCEEEEeccc
Confidence 01 2335566667777 99999999873
No 259
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=60.94 E-value=63 Score=29.06 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=31.0
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCe-EEEEeC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLN-VTVLIT 41 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~-Vt~~~~ 41 (473)
|+=|+|.-.|..|--.....|.+.|+++||. .+.+..
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 6678888899999999999999999999986 444433
No 260
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=60.38 E-value=83 Score=29.12 Aligned_cols=100 Identities=24% Similarity=0.196 Sum_probs=57.5
Q ss_pred CChHHHHH----HHHHHHh--CCCeEEEEeCC--CChhhhhhhccCCCCCCee-EEEcCCCCCCCCCChhhHHHHHHHHH
Q 042753 17 GHIIPLLD----LTNRLLT--LGLNVTVLITQ--NNLPLLDSLNANHPSTSLQ-SLVLPQPKWPAGSPATRLLKFMRVLR 87 (473)
Q Consensus 17 GH~~p~l~----La~~L~~--rGh~Vt~~~~~--~~~~~i~~~~~~~~~~~~~-f~~l~~~~~~~~~~~~~~~~~~~~~~ 87 (473)
--+||+-. .|-+|.+ .|-+|+.++-. ...+.+...++ . |.+ -+.+......+..+
T Consensus 33 ~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a~~~lr~aLA--m--GaDraili~d~~~~~~d~------------ 96 (260)
T COG2086 33 LSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQAEEALREALA--M--GADRAILITDRAFAGADP------------ 96 (260)
T ss_pred cccChhhHHHHHHHHHhhccCCCceEEEEEecchhhHHHHHHHHh--c--CCCeEEEEecccccCccH------------
Confidence 45566544 4566666 46789998865 34444554322 1 221 22222111111111
Q ss_pred HHhhHHHHHHHhcCCCCCcEEEeCCC-----cc-hHHHHHHHhCCCcEEEecc
Q 042753 88 ELHYPALLDWFKSHPSPPVAILSDFF-----LG-WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 88 ~~~~~~l~~~l~~~~~~pD~VV~D~~-----~~-~~~~~A~~~giP~v~~~~~ 134 (473)
......+.+.++.. ++|+|++.-- +. -+..+|+.+|.|++++.+-
T Consensus 97 ~~ta~~Laa~~~~~--~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~ 147 (260)
T COG2086 97 LATAKALAAAVKKI--GPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSK 147 (260)
T ss_pred HHHHHHHHHHHHhc--CCCEEEEecccccCCccchHHHHHHHhCCceeeeEEE
Confidence 13345677788888 9999996433 22 5789999999999987544
No 261
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=60.25 E-value=38 Score=33.59 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=36.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLL 48 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 48 (473)
..|+++-.=+.|-..-+-.||+.|.++|+.|.+++.+.+++..
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA 143 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAA 143 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHH
Confidence 3456776778899999999999999999999999998876543
No 262
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=60.03 E-value=38 Score=35.15 Aligned_cols=79 Identities=9% Similarity=-0.031 Sum_probs=46.4
Q ss_pred HHHhhhccCccceee---ccC-chhHHHHHhhCCeEecCcccccchhhHHHHHHH-hcceEEeccCC--CCCCCHHHHHH
Q 042753 345 QVAILRHKAVGAFLT---HCG-WNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQ-LGVGIRVGEGT--RNIPESDELAR 417 (473)
Q Consensus 345 q~~lL~~~~v~~~It---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~-~G~G~~l~~~~--~~~~~~~~l~~ 417 (473)
..+++..|++ +|. +=| .-+.+||+++|+|+|+....+=- .++.-+... ...|+.+.... .-..+.++|.+
T Consensus 468 y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~-~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 468 YEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFG-CFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred hHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchh-hhhHHHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 4677888887 665 345 44899999999999997653210 111212211 01466665200 11235677888
Q ss_pred HHHHHhCCc
Q 042753 418 LLAQSVDGP 426 (473)
Q Consensus 418 ~i~~~l~~~ 426 (473)
++.++++.+
T Consensus 545 ~m~~~~~~~ 553 (590)
T cd03793 545 YMYEFCQLS 553 (590)
T ss_pred HHHHHhCCc
Confidence 888887543
No 263
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.64 E-value=16 Score=34.46 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=40.9
Q ss_pred hhccCccceeeccCchhHHHHHhh----CCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhC
Q 042753 349 LRHKAVGAFLTHCGWNSVLEGVSA----GVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVD 424 (473)
Q Consensus 349 L~~~~v~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~ 424 (473)
...+++ +|+-||=||++.+... ++|++.+ +.|...= -...+.+++.++++++++
T Consensus 62 ~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGI-----------------N~G~lGF---Lt~~~~~~~~~~l~~i~~ 119 (287)
T PRK14077 62 FKISDF--LISLGGDGTLISLCRKAAEYDKFVLGI-----------------HAGHLGF---LTDITVDEAEKFFQAFFQ 119 (287)
T ss_pred ccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEE-----------------eCCCccc---CCcCCHHHHHHHHHHHHc
Confidence 344665 9999999999988663 7888887 2342222 345778999999999988
Q ss_pred Cc
Q 042753 425 GP 426 (473)
Q Consensus 425 ~~ 426 (473)
++
T Consensus 120 g~ 121 (287)
T PRK14077 120 GE 121 (287)
T ss_pred CC
Confidence 64
No 264
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=59.29 E-value=54 Score=31.35 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
+||+|+-.+.. .++..++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhCCCcEEEEEcC
Confidence 47888755443 367778888999999877764
No 265
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=59.19 E-value=63 Score=36.06 Aligned_cols=91 Identities=20% Similarity=0.207 Sum_probs=56.5
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCh----hhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNL----PLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLL 80 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~----~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 80 (473)
++|++++..+. -..++++.|.+.|-+|..+++.... ..+.... ..+... +..
T Consensus 320 GKrv~i~~g~~-----~~~~la~~l~elGmevv~~g~~~~~~~d~~~~~~~~----~~~~~v--i~~------------- 375 (917)
T PRK14477 320 GKRVVLFTGGV-----KTWSMVNALRELGVEVLAAGTQNSTLEDFARMKALM----HKDAHI--IED------------- 375 (917)
T ss_pred CCEEEEECCCc-----hHHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHhc----CCCCEE--EEC-------------
Confidence 67888876542 3566888888889999886665322 1122111 001111 110
Q ss_pred HHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEe
Q 042753 81 KFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFS 132 (473)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~ 132 (473)
.-...+.+++++. +||++|.... ...+|+++|||++-..
T Consensus 376 --------~d~~el~~~i~~~--~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 376 --------TSTAGLLRVMREK--MPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred --------CCHHHHHHHHHhc--CCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 1113445667788 9999999754 6778999999999655
No 266
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=58.87 E-value=24 Score=31.17 Aligned_cols=46 Identities=13% Similarity=-0.052 Sum_probs=39.7
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDS 50 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 50 (473)
..||++.+.++-.|-....-++..|..+|++|++++...-.+.+.+
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~ 129 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVE 129 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHH
Confidence 4799999999999999999999999999999999998765544433
No 267
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=58.84 E-value=79 Score=29.64 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=33.6
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhh
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSL 51 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~ 51 (473)
.+++|+++-.+..|. .+|+.|.++||.|.++..+...+.....
T Consensus 2 ~~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 2 ASMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLKAA 44 (279)
T ss_pred CCcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHHHH
Confidence 357788887777775 5899999999999999988776655444
No 268
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=58.56 E-value=22 Score=31.50 Aligned_cols=45 Identities=13% Similarity=-0.041 Sum_probs=38.2
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLD 49 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~ 49 (473)
..||++.+.++-.|-....-++..|.++|++|+++......+.+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~ 126 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFV 126 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
Confidence 468999999999999999999999999999999988764444443
No 269
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=57.61 E-value=1e+02 Score=31.31 Aligned_cols=105 Identities=18% Similarity=0.157 Sum_probs=65.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
+.=+++.--|+.|-..-++.++..+.++|+.|.|++.++..+.+.....+ -++.+..+.. +. .
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~r---lg~~~~~l~~-----~~-e-------- 156 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIR---LGLPEPNLYV-----LS-E-------- 156 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHH---cCCChHHeEE-----cC-C--------
Confidence 44456777889999999999999999999999999988665444321100 0111100000 00 0
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeCCCcch---------------------HHHHHHHhCCCcEEEe
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSDFFLGW---------------------TQGLAAELGLPRVVFS 132 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~---------------------~~~~A~~~giP~v~~~ 132 (473)
.....+.+.+++. ++|+||.|..... ...+|++.|++++.+.
T Consensus 157 ----~~~~~I~~~i~~~--~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~ 219 (454)
T TIGR00416 157 ----TNWEQICANIEEE--NPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVG 219 (454)
T ss_pred ----CCHHHHHHHHHhc--CCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 0113445556677 8999999987431 1234788899888763
No 270
>PRK08760 replicative DNA helicase; Provisional
Probab=57.33 E-value=62 Score=33.03 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=32.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCCCChhh
Q 042753 8 ILVYPFPTSGHIIPLLDLTNRLLT-LGLNVTVLITQNNLPL 47 (473)
Q Consensus 8 Il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~ 47 (473)
|++..-|+.|-..-.+.+|...+. .|+.|.|++-+.....
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~q 272 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQ 272 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHH
Confidence 466778999999999999998875 5999999998765443
No 271
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=56.64 E-value=51 Score=33.03 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=35.1
Q ss_pred cEE-EEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCCCChhh
Q 042753 6 AHI-LVYPFPTSGHIIPLLDLTNRLL-TLGLNVTVLITQNNLPL 47 (473)
Q Consensus 6 ~~I-l~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~ 47 (473)
++| +++..+|.|-..-...||..|. ++|..|.+++.+.++..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 455 5666888999999999999997 57999999999977654
No 272
>PLN02470 acetolactate synthase
Probab=56.62 E-value=41 Score=35.36 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=50.5
Q ss_pred EeCCcccCCH--HHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhh-cCCCeEeecCc-cHHHh------
Q 042753 279 CFGSRYVLTA--KQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRV-AGRGYVIRGWS-QQVAI------ 348 (473)
Q Consensus 279 s~Gs~~~~~~--~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~-pq~~l------ 348 (473)
+|||....+. ..-+.+++.|++.+.+.|+-+.+.. . ..+.+.. ..+++....-- -+.+.
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~---------~--~~l~dal~~~~~i~~i~~rhE~~A~~~Adgy 70 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGA---------S--MEIHQALTRSNCIRNVLCRHEQGEVFAAEGY 70 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcc---------c--HHHHHHHhccCCceEEEeccHHHHHHHHHHH
Confidence 4666543222 2245678888888888888877752 1 1122222 11232221110 11111
Q ss_pred -hhccCccceeeccCc------hhHHHHHhhCCeEecCc
Q 042753 349 -LRHKAVGAFLTHCGW------NSVLEGVSAGVVMLTWP 380 (473)
Q Consensus 349 -L~~~~v~~~ItHgG~------~s~~eal~~GvP~l~~P 380 (473)
.....++++++|.|- +.+.+|.+.++|||++.
T Consensus 71 ar~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 71 AKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 122345568888884 47889999999999984
No 273
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=56.59 E-value=58 Score=32.72 Aligned_cols=35 Identities=14% Similarity=0.296 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEE
Q 042753 92 PALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 92 ~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~ 131 (473)
..+.+++++. +||++|.+.. ...+|+++|||++.+
T Consensus 362 ~e~~~~l~~~--~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 362 FDIESYAKEL--KIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHhc--CCCEEEECch---hHHHHHHcCCCEEEe
Confidence 4567778888 9999999965 678999999999875
No 274
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=56.41 E-value=25 Score=28.23 Aligned_cols=42 Identities=19% Similarity=0.076 Sum_probs=36.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhh
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLL 48 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 48 (473)
||++.+.++-.|-.-..-++.-|...|++|++.......+.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~ 42 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEI 42 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 688999999999999999999999999999999986544433
No 275
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=56.40 E-value=73 Score=31.85 Aligned_cols=93 Identities=15% Similarity=0.165 Sum_probs=52.5
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCCC-ChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLL-TLGLNVTVLITQN-NLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKF 82 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~-~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 82 (473)
++||.++..+ . ....+++.|. +.|-+|..+++.. ..+..+...... +...+. +..
T Consensus 288 Gk~vai~~~~--~---~~~~la~~l~~elG~~v~~i~~~~~~~~~~~~~~~~~--~~~~~~-v~d--------------- 344 (415)
T cd01977 288 GKKVCIWTGG--P---KLWHWTKVIEDELGMQVVAMSSKFGHQEDFEKVIARG--GEGTIY-IDD--------------- 344 (415)
T ss_pred CCEEEEECCC--c---hHHHHHHHHHHhcCCEEEEEEEEeccHHHHHHHHHhc--CCceEE-EeC---------------
Confidence 4677765433 2 2588888887 6899998876642 222212111000 001111 010
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEE
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~ 131 (473)
...-.+.+.+++. +||+||.... .-.+|+++|||++.+
T Consensus 345 ------~~~~e~~~~~~~~--~pdliig~s~---~~~~a~~lgip~~~~ 382 (415)
T cd01977 345 ------PNELEFFEILEML--KPDIILTGPR---VGELVKKLHVPYVNI 382 (415)
T ss_pred ------CCHHHHHHHHHhc--CCCEEEecCc---cchhhhhcCCCEEec
Confidence 0111233445677 8999999865 447899999999886
No 276
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=56.33 E-value=37 Score=34.09 Aligned_cols=36 Identities=36% Similarity=0.418 Sum_probs=31.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNL 45 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 45 (473)
++||+++-.+..| ++.++.|.++|++|++.-...+.
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCCc
Confidence 7899999998888 89999999999999998865544
No 277
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=56.27 E-value=89 Score=25.97 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=20.3
Q ss_pred ceeeccC------chhHHHHHhhCCeEecCcc
Q 042753 356 AFLTHCG------WNSVLEGVSAGVVMLTWPM 381 (473)
Q Consensus 356 ~~ItHgG------~~s~~eal~~GvP~l~~P~ 381 (473)
.+++|+| .+.+.+|...++|+|++.-
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 4788866 3477888999999999853
No 278
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=56.23 E-value=1.3e+02 Score=25.60 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=34.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh
Q 042753 8 ILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP 46 (473)
Q Consensus 8 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 46 (473)
+++.-.++.|-......++..|.++|..|.++..+.+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 456778899999999999999999999999999886643
No 279
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=55.96 E-value=38 Score=29.18 Aligned_cols=42 Identities=17% Similarity=0.021 Sum_probs=35.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhh
Q 042753 8 ILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLD 49 (473)
Q Consensus 8 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~ 49 (473)
+++.-.|+.|=..-.+.++.+..+.|..|.|++.+...+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~ 43 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELI 43 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHH
Confidence 466778899999999999999999999999999987655543
No 280
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=55.79 E-value=37 Score=28.72 Aligned_cols=35 Identities=31% Similarity=0.231 Sum_probs=28.3
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEE
Q 042753 275 VVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCV 309 (473)
Q Consensus 275 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 309 (473)
.||+++||-...+...++..+.+|.+.+..-++..
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 69999999988888889999999988775434444
No 281
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.65 E-value=59 Score=30.76 Aligned_cols=54 Identities=26% Similarity=0.137 Sum_probs=39.6
Q ss_pred ccCccceeeccCchhHHHHHhh----CCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc
Q 042753 351 HKAVGAFLTHCGWNSVLEGVSA----GVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 351 ~~~v~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~ 426 (473)
.+++ +|+=||=||++++... ++|++.+.. |...= ....+.+++.++|+++++++
T Consensus 62 ~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~-----------------G~lGF---l~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 62 VCDL--VIVVGGDGSLLGAARALARHNVPVLGINR-----------------GRLGF---LTDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred CCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeC-----------------Ccccc---cccCCHHHHHHHHHHHHcCC
Confidence 4555 9999999999999753 678887742 22111 23577899999999999864
No 282
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=55.47 E-value=1.6e+02 Score=26.56 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=35.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCChhhhh
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTL-GLNVTVLITQNNLPLLD 49 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~i~ 49 (473)
=+++...|+.|=..-++.++..++.. |+.|.|++.+...+.+.
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~ 58 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLL 58 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHH
Confidence 34667788999999999999988887 99999999987655443
No 283
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.29 E-value=19 Score=33.97 Aligned_cols=58 Identities=10% Similarity=0.115 Sum_probs=42.3
Q ss_pred HhhhccCccceeeccCchhHHHHHhh----CCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHH
Q 042753 347 AILRHKAVGAFLTHCGWNSVLEGVSA----GVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQS 422 (473)
Q Consensus 347 ~lL~~~~v~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~ 422 (473)
++...+++ +|+=||=||++.+... ++|++.+ +.|...= -...+.+++.++++++
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGI-----------------N~G~lGF---Lt~~~~~~~~~~l~~i 117 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGI-----------------NTGRLGF---LATVSKEEIEETIDEL 117 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEE-----------------ecCCCCc---ccccCHHHHHHHHHHH
Confidence 33344665 9999999999999773 7898887 2332211 3357789999999999
Q ss_pred hCCc
Q 042753 423 VDGP 426 (473)
Q Consensus 423 l~~~ 426 (473)
+++.
T Consensus 118 ~~g~ 121 (292)
T PRK01911 118 LNGD 121 (292)
T ss_pred HcCC
Confidence 9875
No 284
>PRK07773 replicative DNA helicase; Validated
Probab=55.29 E-value=68 Score=35.71 Aligned_cols=119 Identities=18% Similarity=0.121 Sum_probs=70.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCChhhhh-hhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHH
Q 042753 8 ILVYPFPTSGHIIPLLDLTNRLLTL-GLNVTVLITQNNLPLLD-SLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRV 85 (473)
Q Consensus 8 Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~i~-~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~ 85 (473)
|++..-|+.|-..-.+.+|...+.+ |..|.|++-+.....+. ..... ..++....+.. ..+. ...+..+..+
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R~~s~--~~~i~~~~i~~---g~l~-~~~~~~~~~a 293 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMRLLSA--EAKIKLSDMRS---GRMS-DDDWTRLARA 293 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHH--hcCCCHHHHhc---CCCC-HHHHHHHHHH
Confidence 5677789999999999999998754 88999999886654432 22210 01232222210 1111 1122222221
Q ss_pred HHH-----------------HhhHHHHHHHhcCCCCCcEEEeCCCcch-------------------HHHHHHHhCCCcE
Q 042753 86 LRE-----------------LHYPALLDWFKSHPSPPVAILSDFFLGW-------------------TQGLAAELGLPRV 129 (473)
Q Consensus 86 ~~~-----------------~~~~~l~~~l~~~~~~pD~VV~D~~~~~-------------------~~~~A~~~giP~v 129 (473)
+.. .+...+.++.++. +.|+||.|.+... .-.+|++++||+|
T Consensus 294 ~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~--~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK~lAkel~vpvi 371 (886)
T PRK07773 294 MGEISEAPIFIDDTPNLTVMEIRAKARRLRQEA--NLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLKLLAKELEVPVV 371 (886)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhc--CCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcEE
Confidence 110 2233445555566 8999999986432 1247889999999
Q ss_pred EEecc
Q 042753 130 VFSPS 134 (473)
Q Consensus 130 ~~~~~ 134 (473)
.++-.
T Consensus 372 ~lsQL 376 (886)
T PRK07773 372 ALSQL 376 (886)
T ss_pred Eeccc
Confidence 98644
No 285
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=55.08 E-value=23 Score=33.80 Aligned_cols=44 Identities=16% Similarity=0.115 Sum_probs=33.2
Q ss_pred CCCCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhh
Q 042753 1 MLPAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDS 50 (473)
Q Consensus 1 ~~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 50 (473)
|.+..+||+++-.++.| ..+|..|.+.||+|+++.... .+.+..
T Consensus 1 ~~~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~-~~~~~~ 44 (313)
T PRK06249 1 MDSETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD-YEAVRE 44 (313)
T ss_pred CCCcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC-HHHHHh
Confidence 56677899999777766 457888999999999999865 333433
No 286
>PRK09165 replicative DNA helicase; Provisional
Probab=55.08 E-value=1e+02 Score=31.70 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=32.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhC---------------CCeEEEEeCCCChhhh
Q 042753 8 ILVYPFPTSGHIIPLLDLTNRLLTL---------------GLNVTVLITQNNLPLL 48 (473)
Q Consensus 8 Il~~~~~~~GH~~p~l~La~~L~~r---------------Gh~Vt~~~~~~~~~~i 48 (473)
|++...|+.|-..-.+.+|...+.+ |..|.|++-+.....+
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 5667788999999999999888753 8899999988665443
No 287
>PRK05920 aromatic acid decarboxylase; Validated
Probab=55.00 E-value=14 Score=32.73 Aligned_cols=45 Identities=22% Similarity=0.224 Sum_probs=35.1
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDS 50 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 50 (473)
++||++...++.+= .=...+.++|.+.||+|.++.+....+.+..
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 57887776655544 5788999999999999999999876665543
No 288
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=54.96 E-value=68 Score=32.11 Aligned_cols=41 Identities=10% Similarity=0.125 Sum_probs=35.0
Q ss_pred cEE-EEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh
Q 042753 6 AHI-LVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP 46 (473)
Q Consensus 6 ~~I-l~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 46 (473)
++| +++-.+|.|-..-...||..|.++|+.|.+++.+.++.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 344 56667899999999999999999999999999987763
No 289
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=54.83 E-value=84 Score=28.79 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=57.3
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
|++|+++-. .+ =...|+++|...++.+++.+............. ..... . +
T Consensus 2 ~~~ilvlGG--T~---Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~-----~~~~~--G---------------~-- 52 (257)
T COG2099 2 MMRILLLGG--TS---DARALAKKLAAAPVDIILSSLTGYGAKLAEQIG-----PVRVG--G---------------F-- 52 (257)
T ss_pred CceEEEEec--cH---HHHHHHHHhhccCccEEEEEcccccccchhccC-----Ceeec--C---------------c--
Confidence 455555432 22 346899999999988888777654333322210 11110 0 0
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc------hHHHHHHHhCCCcEEE
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSDFFLG------WTQGLAAELGLPRVVF 131 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~------~~~~~A~~~giP~v~~ 131 (473)
.-.+.+.++|++. +.|+||=-.+-+ -+..+|+..|||++.|
T Consensus 53 ----l~~e~l~~~l~e~--~i~llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 53 ----LGAEGLAAFLREE--GIDLLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred ----CCHHHHHHHHHHc--CCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 3357788999999 999988444422 2357889999999996
No 290
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=54.27 E-value=25 Score=29.83 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=33.7
Q ss_pred ccEEE-EEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHIL-VYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|++|+ ++-+...|-..-+-.|.++|.+||++|-.+=+..
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 67776 7778888999999999999999999999887653
No 291
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=54.21 E-value=1.8e+02 Score=26.82 Aligned_cols=41 Identities=10% Similarity=0.057 Sum_probs=34.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNL 45 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 45 (473)
+.=+++.-.|+.|-..-.+.++...+++|..|.|++.+...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 44567777889999999999999988899999999987533
No 292
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=54.15 E-value=95 Score=24.58 Aligned_cols=86 Identities=9% Similarity=-0.076 Sum_probs=54.6
Q ss_pred CChHHHHHHHHHHHhC--CCeEEEEeCCCChhhhhh-hccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhHH
Q 042753 17 GHIIPLLDLTNRLLTL--GLNVTVLITQNNLPLLDS-LNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPA 93 (473)
Q Consensus 17 GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~-~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (473)
.+=.-++.+++.|.+. |+++. .+......+++ . |+....+..... .-.++
T Consensus 9 ~dK~~~~~~a~~~~~ll~Gf~i~--AT~gTa~~L~~~~-------Gi~v~~vk~~~~------------------~g~~~ 61 (115)
T cd01422 9 NKKEDLVEFVKQHQELLSRHRLV--ATGTTGLLIQEAT-------GLTVNRMKSGPL------------------GGDQQ 61 (115)
T ss_pred cchHHHHHHHHHHHHHhcCCEEE--EechHHHHHHHhh-------CCcEEEEecCCC------------------CchhH
Confidence 3445678999999998 99973 55556666666 4 455443321101 11255
Q ss_pred HHHHHhcCCCCCcEEEeCCC--c-----chH---HHHHHHhCCCcEEE
Q 042753 94 LLDWFKSHPSPPVAILSDFF--L-----GWT---QGLAAELGLPRVVF 131 (473)
Q Consensus 94 l~~~l~~~~~~pD~VV~D~~--~-----~~~---~~~A~~~giP~v~~ 131 (473)
+.+.+++. +.|+||.-.- . .-+ ...|-..+||+++.
T Consensus 62 i~~~i~~g--~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~Tt 107 (115)
T cd01422 62 IGALIAEG--EIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLATN 107 (115)
T ss_pred HHHHHHcC--ceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEEEc
Confidence 67778888 9999986643 1 112 35588889998874
No 293
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.13 E-value=90 Score=23.33 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhccCCCcc
Q 042753 414 ELARLLAQSVDGP---RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINELKSGKNLT 471 (473)
Q Consensus 414 ~l~~~i~~~l~~~---~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~ 471 (473)
+....++++.+|. ...|+.|++..+.+. .+|.+....+...|.-+.+.+...||+
T Consensus 17 q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~---~e~e~p~vRaAtaIsiLeeisnDPNmP 74 (93)
T COG1698 17 QVMQLLDEIIQDTTVPRNIRRAAEEAKEALN---NEGESPAVRAATAISILEEISNDPNMP 74 (93)
T ss_pred HHHHHHHHHHccccccHHHHHHHHHHHHHHh---CCCCCchhHHHHHHHHHHHHhcCCCCc
Confidence 3445566777776 455555555555554 457788888888888888888888875
No 294
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=53.80 E-value=1.1e+02 Score=32.98 Aligned_cols=104 Identities=20% Similarity=0.124 Sum_probs=59.2
Q ss_pred cEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 6 AHILVYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 6 ~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
..|++.+ .+..|-..-.+.|++.|.++|.+|-++=+-.....-.... ... +. . .....
T Consensus 3 k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~~~~~-------~~~--~~----~-----~~~~~--- 61 (684)
T PRK05632 3 RSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLTMSEV-------EAL--LA----S-----GQLDE--- 61 (684)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCHHHH-------HHH--Hh----c-----cCChH---
Confidence 3565554 4456999999999999999999999876432110000000 000 00 0 00000
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc---------hHHHHHHHhCCCcEEEecch
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSDFFLG---------WTQGLAAELGLPRVVFSPSG 135 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~---------~~~~~A~~~giP~v~~~~~~ 135 (473)
.+. .+.+.+.++ + . +.|+||+|...+ ....+|+.++.|++.+....
T Consensus 62 ~~~-~I~~~~~~l-~-~--~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 62 LLE-EIVARYHAL-A-K--DCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred HHH-HHHHHHHHh-c-c--CCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 111 222333332 1 2 789999877643 23678999999999998664
No 295
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.54 E-value=22 Score=33.85 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=40.8
Q ss_pred hccCccceeeccCchhHHHHHhh----CCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCC
Q 042753 350 RHKAVGAFLTHCGWNSVLEGVSA----GVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDG 425 (473)
Q Consensus 350 ~~~~v~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~ 425 (473)
..+++ +|+=||=||++.|... ++|++.+ +.|...= -...+.+++.+++++++++
T Consensus 67 ~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGI-----------------N~G~lGF---Lt~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 67 SSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTI-----------------NTGHLGF---LTEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred cCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEE-----------------eCCCCcc---cccCCHHHHHHHHHHHHcC
Confidence 34554 9999999999999775 7898888 2232111 2356789999999999987
Q ss_pred c
Q 042753 426 P 426 (473)
Q Consensus 426 ~ 426 (473)
+
T Consensus 125 ~ 125 (305)
T PRK02649 125 Q 125 (305)
T ss_pred C
Confidence 5
No 296
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=53.52 E-value=37 Score=30.41 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCC--ChHHHHHHHHHHHh
Q 042753 5 GAHILVYPFPTSG--HIIPLLDLTNRLLT 31 (473)
Q Consensus 5 ~~~Il~~~~~~~G--H~~p~l~La~~L~~ 31 (473)
|+|||+.-|.-+| ..||...++++|..
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~ 29 (215)
T PRK13197 1 MMKILVTGFDPFGGEKINPSWEAVKQLPG 29 (215)
T ss_pred CCEEEEeeccCCCCCCCCcHHHHHHHccc
Confidence 7888877765553 58999999999955
No 297
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=53.21 E-value=16 Score=31.86 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=33.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNL 45 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 45 (473)
+||++.-.++.|=+.-...+.++|.++|++|+++.++...
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 4777777777777777779999999999999999988553
No 298
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=52.96 E-value=56 Score=31.50 Aligned_cols=100 Identities=15% Similarity=0.165 Sum_probs=60.4
Q ss_pred cEEEEEcCCCC-C----ChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHH
Q 042753 6 AHILVYPFPTS-G----HIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLL 80 (473)
Q Consensus 6 ~~Il~~~~~~~-G----H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 80 (473)
+.|++.|..+. . -..-+..|++.|.++|.+|.++.++...+.++.... ...... .+.+.
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~-----~~~~~~-------~l~~k---- 239 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAK-----GLPNAV-------ILAGK---- 239 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHH-----hcCCcc-------ccCCC----
Confidence 45677776233 1 233588999999999999999998855444444321 111100 01111
Q ss_pred HHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecch
Q 042753 81 KFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSG 135 (473)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~ 135 (473)
.-..++..+++ .-|++|+.- ++...+|..+|+|+|.++...
T Consensus 240 --------~sL~e~~~li~----~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 240 --------TSLEELAALIA----GADLVIGND--SGPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred --------CCHHHHHHHHh----cCCEEEccC--ChHHHHHHHcCCCEEEEECCC
Confidence 11233344454 558888653 456799999999999987553
No 299
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=52.39 E-value=1e+02 Score=31.16 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=27.2
Q ss_pred HHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEE
Q 042753 93 ALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 93 ~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~ 131 (473)
.+.+.+++. +||++|.... +..+|+++|||++.+
T Consensus 378 e~~~~i~~~--~pdllig~s~---~~~~A~~lgip~~~~ 411 (443)
T TIGR01862 378 EFEEILEKL--KPDIIFSGIK---EKFVAQKLGVPYRQM 411 (443)
T ss_pred HHHHHHHhc--CCCEEEEcCc---chhhhhhcCCCeEec
Confidence 345567777 8999998854 678999999999875
No 300
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=52.31 E-value=22 Score=32.24 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=27.2
Q ss_pred cEEEEEcCCCCCChHH------------HHHHHHHHHhCCCeEEEEeCC
Q 042753 6 AHILVYPFPTSGHIIP------------LLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~ 42 (473)
||||+.+.|+.-.+.| -.+||++|.++||+|+++..+
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 3666666666555544 368899999999999999754
No 301
>PRK06321 replicative DNA helicase; Provisional
Probab=52.29 E-value=1.8e+02 Score=29.64 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=32.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCCCChhh
Q 042753 8 ILVYPFPTSGHIIPLLDLTNRLLT-LGLNVTVLITQNNLPL 47 (473)
Q Consensus 8 Il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~ 47 (473)
|++-.-|+.|-..-.+.+|...+. .|..|.|++-+.....
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~q 269 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQ 269 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHH
Confidence 466778999999999999999874 5999999998765443
No 302
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=52.09 E-value=91 Score=28.11 Aligned_cols=150 Identities=7% Similarity=-0.054 Sum_probs=82.6
Q ss_pred HHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCcc
Q 042753 265 TWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQ 344 (473)
Q Consensus 265 ~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~p 344 (473)
-|++. .+++++.|..|..+. .=+..|.+.+.++.++.+.-. +++.+-.....+....---
T Consensus 19 i~l~~-~~~~VLVVGGG~VA~-------RK~~~Ll~~gA~VtVVap~i~------------~el~~l~~~~~i~~~~r~~ 78 (223)
T PRK05562 19 ISLLS-NKIKVLIIGGGKAAF-------IKGKTFLKKGCYVYILSKKFS------------KEFLDLKKYGNLKLIKGNY 78 (223)
T ss_pred eEEEC-CCCEEEEECCCHHHH-------HHHHHHHhCCCEEEEEcCCCC------------HHHHHHHhCCCEEEEeCCC
Confidence 35555 357788887777752 224556668888777766532 3333322333333322222
Q ss_pred HHHhhhccCccceeeccCchhHHHHHhh-----CCeEecCcccccchhhHHH-----HHHHhcceEEeccCCCCCCCHHH
Q 042753 345 QVAILRHKAVGAFLTHCGWNSVLEGVSA-----GVVMLTWPMDADQYTNAQL-----LVDQLGVGIRVGEGTRNIPESDE 414 (473)
Q Consensus 345 q~~lL~~~~v~~~ItHgG~~s~~eal~~-----GvP~l~~P~~~DQ~~na~r-----v~~~~G~G~~l~~~~~~~~~~~~ 414 (473)
+..-|..+.+ +|..-+-..+.+.++. |+++.++ |++..+.. +. +=++-+.+..+.....-+..
T Consensus 79 ~~~dl~g~~L--ViaATdD~~vN~~I~~~a~~~~~lvn~v----d~p~~~dFi~PAiv~-rg~l~IaIST~G~sP~lar~ 151 (223)
T PRK05562 79 DKEFIKDKHL--IVIATDDEKLNNKIRKHCDRLYKLYIDC----SDYKKGLCIIPYQRS-TKNFVFALNTKGGSPKTSVF 151 (223)
T ss_pred ChHHhCCCcE--EEECCCCHHHHHHHHHHHHHcCCeEEEc----CCcccCeEEeeeEEe-cCCEEEEEECCCcCcHHHHH
Confidence 3344566665 7887787777776544 5665543 44444332 22 21344444422234445567
Q ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHH
Q 042753 415 LARLLAQSVDGPRRERLKARELSGAAL 441 (473)
Q Consensus 415 l~~~i~~~l~~~~~~~~~a~~~~~~~~ 441 (473)
|++.|++++.+-..+-+.+.+++..++
T Consensus 152 lR~~ie~~l~~~~~l~~~l~~~R~~vk 178 (223)
T PRK05562 152 IGEKVKNFLKKYDDFIEYVTKIRNKAK 178 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888322456666666666665
No 303
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=52.04 E-value=86 Score=32.35 Aligned_cols=34 Identities=9% Similarity=0.152 Sum_probs=28.0
Q ss_pred HHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEE
Q 042753 93 ALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 93 ~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~ 131 (473)
.+.+++... +||++|.+.. +..+|+++|||+|.+
T Consensus 428 ~l~~~l~~~--~~DlliG~s~---~k~~a~~~giPlir~ 461 (515)
T TIGR01286 428 HLRSLVFTE--PVDFLIGNSY---GKYIQRDTLVPLIRI 461 (515)
T ss_pred HHHHHHhhc--CCCEEEECch---HHHHHHHcCCCEEEe
Confidence 455667777 9999999854 788899999999875
No 304
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=51.63 E-value=68 Score=28.74 Aligned_cols=102 Identities=12% Similarity=-0.044 Sum_probs=59.0
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChh-hHHHH
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPAT-RLLKF 82 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~-~~~~~ 82 (473)
.+.-+++.-.|+.|-..-.+.++..-+++|+.|.|++.....+.+.+.... .++.+..+-. ..+.-.+ ....+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~---~~~~~~~~~~---~~l~~~~~~~~~~ 88 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKS---KGWDLEDYID---KSLYIVRLDPSDF 88 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHH---cCCChHHHHh---CCeEEEecCHHHH
Confidence 445566777889999888888888877889999999998776655443211 1121111000 0000000 00011
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCc
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILSDFFL 114 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~ 114 (473)
..... .+...+..++++. ++++||.|.+.
T Consensus 89 ~~~~~-~l~~~~~~~i~~~--~~~~vVIDsls 117 (224)
T TIGR03880 89 KTSLN-RIKNELPILIKEL--GASRVVIDPIS 117 (224)
T ss_pred HhhHH-HHHHHHHHHHHHh--CCCEEEEcChH
Confidence 11222 3445667777888 89999999764
No 305
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.63 E-value=86 Score=31.79 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=25.7
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
++||+++-.+..| +++|+.|.++|++|+..=..
T Consensus 14 ~~~i~v~G~G~sG-----~a~a~~L~~~G~~V~~~D~~ 46 (458)
T PRK01710 14 NKKVAVVGIGVSN-----IPLIKFLVKLGAKVTAFDKK 46 (458)
T ss_pred CCeEEEEcccHHH-----HHHHHHHHHCCCEEEEECCC
Confidence 5788888766655 49999999999999885543
No 306
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=51.29 E-value=1.2e+02 Score=34.49 Aligned_cols=39 Identities=18% Similarity=0.052 Sum_probs=29.7
Q ss_pred ccEEEEEcCCCC--CChH----HHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTS--GHII----PLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~--GH~~----p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
.+|||++-.+.. |+.. ....++++|.+.|++|.++.+.+
T Consensus 7 ~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np 51 (1068)
T PRK12815 7 IQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNP 51 (1068)
T ss_pred CCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCc
Confidence 589988876543 4432 56788999999999999998664
No 307
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=51.22 E-value=37 Score=30.36 Aligned_cols=46 Identities=15% Similarity=-0.034 Sum_probs=39.3
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhh
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLD 49 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~ 49 (473)
...||++.+.++-.|-....=++-.|..+|++|++++...-.+.+.
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v 132 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKIL 132 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHH
Confidence 3579999999999999999999999999999999999875444433
No 308
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=50.65 E-value=58 Score=29.44 Aligned_cols=46 Identities=22% Similarity=0.182 Sum_probs=37.5
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhh
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLL 48 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 48 (473)
|...-+++.-.++.|-..-...++...+++|..|.|++.....+.+
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~ 68 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSY 68 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHH
Confidence 3455567778899999999999988888899999999998665443
No 309
>PRK11519 tyrosine kinase; Provisional
Probab=50.48 E-value=1.3e+02 Score=32.72 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=31.7
Q ss_pred ccEEEEEc--CCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYP--FPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
..|+++++ .|+-|-..-...||..|+..|++|.++-.+-
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dl 565 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDM 565 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 45666544 6788999999999999999999999997653
No 310
>PRK09620 hypothetical protein; Provisional
Probab=50.26 E-value=30 Score=31.38 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=29.0
Q ss_pred ccEEEEEcCCCCCChHH------------HHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIP------------LLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~ 42 (473)
.+||++...|+.=.+.| -..||++|.++|++|+++..+
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 56788777765544333 478999999999999999765
No 311
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.25 E-value=20 Score=33.48 Aligned_cols=60 Identities=8% Similarity=0.075 Sum_probs=40.7
Q ss_pred cHHHhhhccCccceeeccCchhHHHHHhh----CCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHH
Q 042753 344 QQVAILRHKAVGAFLTHCGWNSVLEGVSA----GVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLL 419 (473)
Q Consensus 344 pq~~lL~~~~v~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i 419 (473)
++.++...+++ +|+=||=||++.|... ++|++.+-.. .+|- -...+.+++.+++
T Consensus 35 ~~~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGF------L~~~~~~~~~~~l 92 (272)
T PRK02231 35 SLEEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGF------LTDIDPKNAYEQL 92 (272)
T ss_pred ChHHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCcc------cccCCHHHHHHHH
Confidence 33444445665 9999999999988653 6888877210 1332 2246778888888
Q ss_pred HHHhCC
Q 042753 420 AQSVDG 425 (473)
Q Consensus 420 ~~~l~~ 425 (473)
.+++++
T Consensus 93 ~~~~~~ 98 (272)
T PRK02231 93 EACLER 98 (272)
T ss_pred HHHHhc
Confidence 888883
No 312
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=49.91 E-value=1.2e+02 Score=26.94 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=26.7
Q ss_pred EEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 042753 8 ILVYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLI 40 (473)
Q Consensus 8 Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 40 (473)
|++.+ ....|-..-.+.|++.|.++|++|.++=
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 44443 4556999999999999999999998865
No 313
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=49.85 E-value=90 Score=31.45 Aligned_cols=91 Identities=11% Similarity=0.071 Sum_probs=53.0
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
|+|||++-.+++.| +|+++|.+.|++|.++-...+-.. ... . . .+..+..
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~~~Npg~-~~~-----a-~-~~~~~~~----------------- 51 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIGHENPSI-KKL-----S-K-KYLFYDE----------------- 51 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEECCCChhh-hhc-----c-c-ceeecCC-----------------
Confidence 58999988877766 578899888988777744323111 111 0 0 1111110
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHH---HHhCCCcEEE
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLA---AELGLPRVVF 131 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A---~~~giP~v~~ 131 (473)
.-.+.+.++.++. ++|+||+..-...+..++ ++.|+|+..-
T Consensus 52 ----~d~e~l~~~~~~~--~id~Vi~~~d~~l~~~~~~~l~~~Gi~v~gp 95 (435)
T PRK06395 52 ----KDYDLIEDFALKN--NVDIVFVGPDPVLATPLVNNLLKRGIKVASP 95 (435)
T ss_pred ----CCHHHHHHHHHHh--CCCEEEECCChHHHHHHHHHHHHCCCcEECC
Confidence 1125566777888 899999875433233322 4569986553
No 314
>PRK13768 GTPase; Provisional
Probab=49.81 E-value=1.3e+02 Score=27.78 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=32.1
Q ss_pred ccEEE-EEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 5 GAHIL-VYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 5 ~~~Il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
|+++. +...++.|-..-...++..|.++|+.|.++..+..
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 55554 55567779999999999999999999999986643
No 315
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.80 E-value=26 Score=33.14 Aligned_cols=58 Identities=12% Similarity=0.073 Sum_probs=40.8
Q ss_pred HhhhccCccceeeccCchhHHHHHh----hCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHH
Q 042753 347 AILRHKAVGAFLTHCGWNSVLEGVS----AGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQS 422 (473)
Q Consensus 347 ~lL~~~~v~~~ItHgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~ 422 (473)
++...+++ +|+=||=||++.+.. +++|++.+- .|...= -..++.+++.++++++
T Consensus 59 ~~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin-----------------~G~lGF---l~~~~~~~~~~~l~~i 116 (292)
T PRK03378 59 EIGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGIN-----------------RGNLGF---LTDLDPDNALQQLSDV 116 (292)
T ss_pred hcCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEE-----------------CCCCCc---ccccCHHHHHHHHHHH
Confidence 33334565 999999999999975 377888772 232111 2346689999999999
Q ss_pred hCCc
Q 042753 423 VDGP 426 (473)
Q Consensus 423 l~~~ 426 (473)
+++.
T Consensus 117 ~~g~ 120 (292)
T PRK03378 117 LEGH 120 (292)
T ss_pred HcCC
Confidence 9875
No 316
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.60 E-value=24 Score=33.37 Aligned_cols=58 Identities=10% Similarity=-0.015 Sum_probs=41.4
Q ss_pred HhhhccCccceeeccCchhHHHHHh----hCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHH
Q 042753 347 AILRHKAVGAFLTHCGWNSVLEGVS----AGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQS 422 (473)
Q Consensus 347 ~lL~~~~v~~~ItHgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~ 422 (473)
++...+++ +|+=||=||++.|.. .++|++.+- .|...= -..++.+++.++++++
T Consensus 64 ~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN-----------------~G~lGF---L~~~~~~~~~~~l~~i 121 (296)
T PRK04539 64 ELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGIN-----------------QGHLGF---LTQIPREYMTDKLLPV 121 (296)
T ss_pred hcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEe-----------------cCCCeE---eeccCHHHHHHHHHHH
Confidence 33334665 999999999999975 378988882 232111 2347789999999999
Q ss_pred hCCc
Q 042753 423 VDGP 426 (473)
Q Consensus 423 l~~~ 426 (473)
++++
T Consensus 122 ~~g~ 125 (296)
T PRK04539 122 LEGK 125 (296)
T ss_pred HcCC
Confidence 9875
No 317
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=49.44 E-value=1.3e+02 Score=31.06 Aligned_cols=93 Identities=14% Similarity=0.161 Sum_probs=53.3
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCCCC-hhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLL-TLGLNVTVLITQNN-LPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKF 82 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~-~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 82 (473)
++|++++..|. -...++..|. +-|-+|+.+++... .+..++... ....+ .+.+..
T Consensus 328 GKrvai~~gg~-----~~~~~~~~l~~ElGmevv~~~t~~~~~~d~~~~~~-~~~~~--~~~i~D--------------- 384 (513)
T TIGR01861 328 GKKVCLWPGGS-----KLWHWAHVIEEEMGLKVVSVYSKFGHQGDMEKGVA-RCGEG--ALAIDD--------------- 384 (513)
T ss_pred CCEEEEECCch-----HHHHHHHHHHHhCCCEEEEEeccCCCHHHHHHHHH-hCCCC--cEEecC---------------
Confidence 57777776643 4566777777 47999988877542 222222110 00011 111110
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEE
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~ 131 (473)
...-...+.+++. +||++|.... ...+|+++|||++-.
T Consensus 385 ------~~~~e~~~~l~~~--~~Dllig~s~---~~~~A~k~gIP~ld~ 422 (513)
T TIGR01861 385 ------PNELEGLEAMEML--KPDIILTGKR---PGEVSKKMRVPYLNA 422 (513)
T ss_pred ------CCHHHHHHHHHhc--CCCEEEecCc---cchhHhhcCCCEEEc
Confidence 0001112456777 9999999866 557899999999764
No 318
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=49.24 E-value=1.8e+02 Score=25.41 Aligned_cols=103 Identities=14% Similarity=0.141 Sum_probs=54.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCC--eEEEEeCCC--Ch--hhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGL--NVTVLITQN--NL--PLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRL 79 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh--~Vt~~~~~~--~~--~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 79 (473)
+||+++..+.. .-+.++.+.+.+.++ +|.++.+.. .. +.+++. ++.+..++.. .+..
T Consensus 1 ~riail~sg~g---s~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~-------gip~~~~~~~---~~~~---- 63 (190)
T TIGR00639 1 KRIVVLISGNG---SNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQA-------GIPTFVLSLK---DFPS---- 63 (190)
T ss_pred CeEEEEEcCCC---hhHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHc-------CCCEEEECcc---ccCc----
Confidence 46776665333 245677788887655 777655543 21 122222 5666544321 1110
Q ss_pred HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecc
Q 042753 80 LKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~ 134 (473)
.+...+.+.+++++. ++|++|+-.+.. ....+-......++-++++
T Consensus 64 -------~~~~~~~~~~~l~~~--~~D~iv~~~~~~il~~~~l~~~~~~~iNiHps 110 (190)
T TIGR00639 64 -------REAFDQAIIEELRAH--EVDLVVLAGFMRILGPTFLSRFAGRILNIHPS 110 (190)
T ss_pred -------hhhhhHHHHHHHHhc--CCCEEEEeCcchhCCHHHHhhccCCEEEEeCC
Confidence 113346677888889 999999875533 3333333333344554444
No 319
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=49.06 E-value=1.9e+02 Score=29.05 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=33.9
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCCCChhhh
Q 042753 8 ILVYPFPTSGHIIPLLDLTNRLLT-LGLNVTVLITQNNLPLL 48 (473)
Q Consensus 8 Il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~i 48 (473)
+++...|+.|-..-.+.+|..++. .|+.|.|++.+.....+
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL 239 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence 567778999999999999999876 59999999988665444
No 320
>PRK06526 transposase; Provisional
Probab=49.05 E-value=20 Score=33.08 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=28.3
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
..+++++-.+|.|-..=..+|+.++.++|+.|.|.+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~ 135 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAA 135 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHH
Confidence 34677777777777777888888888888888775554
No 321
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=48.93 E-value=2e+02 Score=25.82 Aligned_cols=99 Identities=18% Similarity=0.150 Sum_probs=58.9
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCh-hhhhhhccC-------CCCCCeeEEEcCCCCCCCCCCh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNL-PLLDSLNAN-------HPSTSLQSLVLPQPKWPAGSPA 76 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~-~~i~~~~~~-------~~~~~~~f~~l~~~~~~~~~~~ 76 (473)
++=+++---.+.|--.-.+.++.-+...||.|++++++... +.+.+.-+- .....+.|.++........
T Consensus 28 GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~--- 104 (235)
T COG2874 28 GSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWG--- 104 (235)
T ss_pred CeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccC---
Confidence 34445555667888899999999999999999999998653 334433110 0112344544432111010
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc
Q 042753 77 TRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG 115 (473)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~ 115 (473)
....+...+.+.+.++.+ +-|++|.|.+..
T Consensus 105 -------~~~~~~~L~~l~~~~k~~--~~dViIIDSls~ 134 (235)
T COG2874 105 -------RRSARKLLDLLLEFIKRW--EKDVIIIDSLSA 134 (235)
T ss_pred -------hHHHHHHHHHHHhhHHhh--cCCEEEEecccH
Confidence 111113334455556666 889999998865
No 322
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=48.85 E-value=2.1e+02 Score=25.90 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=24.8
Q ss_pred CCcEEEe-CCCcc-hHHHHHHHhCCCcEEEecchH
Q 042753 104 PPVAILS-DFFLG-WTQGLAAELGLPRVVFSPSGA 136 (473)
Q Consensus 104 ~pD~VV~-D~~~~-~~~~~A~~~giP~v~~~~~~~ 136 (473)
.||+||+ |+.-- .+..=|.++|||+|.+.-+.+
T Consensus 155 ~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 155 LPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCC
Confidence 6898885 44422 577889999999999876643
No 323
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=48.57 E-value=2.1e+02 Score=26.50 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=24.8
Q ss_pred CCcEEEe-CCCcc-hHHHHHHHhCCCcEEEecchH
Q 042753 104 PPVAILS-DFFLG-WTQGLAAELGLPRVVFSPSGA 136 (473)
Q Consensus 104 ~pD~VV~-D~~~~-~~~~~A~~~giP~v~~~~~~~ 136 (473)
.||+||+ |+..- .++.=|.++|||+|.++-+.+
T Consensus 157 ~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 157 LPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred CCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCC
Confidence 6898885 44433 577889999999999976643
No 324
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=48.56 E-value=86 Score=31.15 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=35.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNL 45 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 45 (473)
..|+|+-.+|.|-..-...||..|..+|+.|.+++.+.++
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4566777788899999999999999999999999998765
No 325
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=48.55 E-value=99 Score=28.42 Aligned_cols=99 Identities=23% Similarity=0.241 Sum_probs=57.2
Q ss_pred HHHHHHHHHhCC-CeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCC-CCCCChh---hHHHHHHHHHHHhhHHHHH
Q 042753 22 LLDLTNRLLTLG-LNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKW-PAGSPAT---RLLKFMRVLRELHYPALLD 96 (473)
Q Consensus 22 ~l~La~~L~~rG-h~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~l~~ 96 (473)
+-..++.|.+.+ .+|.+.+.....+.+... ......+-+..+|.+.. -++++.. ....|...++ .+
T Consensus 118 ~~eA~~~l~~~~~~~iflttGsk~L~~f~~~--~~~~~r~~~RvLp~~~~~~g~~~~~iia~~GPfs~e~n-------~a 188 (249)
T PF02571_consen 118 YEEAAELLKELGGGRIFLTTGSKNLPPFVPA--PLPGERLFARVLPTPESALGFPPKNIIAMQGPFSKELN-------RA 188 (249)
T ss_pred HHHHHHHHhhcCCCCEEEeCchhhHHHHhhc--ccCCCEEEEEECCCccccCCCChhhEEEEeCCCCHHHH-------HH
Confidence 556777777777 666655555555555331 01122454556665532 2333221 1112222222 67
Q ss_pred HHhcCCCCCcEEEeCCCcc----hHHHHHHHhCCCcEEE
Q 042753 97 WFKSHPSPPVAILSDFFLG----WTQGLAAELGLPRVVF 131 (473)
Q Consensus 97 ~l~~~~~~pD~VV~D~~~~----~~~~~A~~~giP~v~~ 131 (473)
++++. +.|+||+=..-- .=..+|+++|||+|.+
T Consensus 189 l~~~~--~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 189 LFRQY--GIDVLVTKESGGSGFDEKIEAARELGIPVIVI 225 (249)
T ss_pred HHHHc--CCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 78888 999999765522 2258899999999996
No 326
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=48.42 E-value=1.5e+02 Score=26.10 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=31.6
Q ss_pred EEE-EEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCh
Q 042753 7 HIL-VYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNL 45 (473)
Q Consensus 7 ~Il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 45 (473)
+|+ |+-..|-|-..-...||..+..+|..|.+++.+.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 454 555668899999999999999999999999998774
No 327
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=48.40 E-value=1e+02 Score=29.85 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=25.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCC-eEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGL-NVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~ 42 (473)
.+||+++-.++.| ..+|+.|++.|+ +++++=.+
T Consensus 24 ~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 24 EKHVLIVGAGALG-----AANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred CCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcCC
Confidence 4688888877766 678999999998 66666544
No 328
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.39 E-value=25 Score=33.40 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=40.7
Q ss_pred hccCccceeeccCchhHHHHHhh----CCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCC
Q 042753 350 RHKAVGAFLTHCGWNSVLEGVSA----GVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDG 425 (473)
Q Consensus 350 ~~~~v~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~ 425 (473)
..+++ +|+=||=||++.|... ++|++.+... .+|- -.+...+++.+++++++++
T Consensus 71 ~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGF------L~~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 71 DGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGF------LAEAEAEDLDEAVERVVDR 128 (306)
T ss_pred cCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCce------eccCCHHHHHHHHHHHHcC
Confidence 34565 9999999999999764 8898888321 1232 2346789999999999987
Q ss_pred c
Q 042753 426 P 426 (473)
Q Consensus 426 ~ 426 (473)
+
T Consensus 129 ~ 129 (306)
T PRK03372 129 D 129 (306)
T ss_pred C
Confidence 5
No 329
>PRK05636 replicative DNA helicase; Provisional
Probab=48.31 E-value=95 Score=31.96 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=31.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCCCChhh
Q 042753 8 ILVYPFPTSGHIIPLLDLTNRLL-TLGLNVTVLITQNNLPL 47 (473)
Q Consensus 8 Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~ 47 (473)
|++...|+.|-..-.+.+|...+ ++|..|.|++.+.....
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~q 308 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSE 308 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHH
Confidence 46677889999999999998876 46899999988765433
No 330
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=48.19 E-value=2.2e+02 Score=26.04 Aligned_cols=42 Identities=12% Similarity=-0.062 Sum_probs=33.5
Q ss_pred ccEEEEEc--CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh
Q 042753 5 GAHILVYP--FPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP 46 (473)
Q Consensus 5 ~~~Il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 46 (473)
|++|.++. -+|.|-......||..|+++|+.|.++-.+....
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~ 44 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNA 44 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence 66776554 5677999999999999999999999997764433
No 331
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=47.85 E-value=35 Score=30.59 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=33.7
Q ss_pred ccEEEEEcCC--CCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFP--TSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|++|++++.+ +-|-..-...|+..|+++|+.|.++-.+-
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~Di 41 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDI 41 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCc
Confidence 7888877754 66999999999999999999999988763
No 332
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=47.53 E-value=68 Score=27.15 Aligned_cols=100 Identities=14% Similarity=0.067 Sum_probs=55.6
Q ss_pred hhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEe
Q 042753 260 AHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVI 339 (473)
Q Consensus 260 ~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v 339 (473)
...+-+++.. +....++ |.. ........++..+.+-+++-+++... . .+..+ ....+.
T Consensus 20 A~~lg~~La~---~g~~lv~-Gg~----~GlM~a~a~ga~~~gg~viGVlp~~l--------~-~~~~~-----~~~~i~ 77 (159)
T TIGR00725 20 AYRLGKELAK---KGHILIN-GGR----TGVMEAVSKGAREAGGLVVGILPDED--------F-AGNPY-----LTIKVK 77 (159)
T ss_pred HHHHHHHHHH---CCCEEEc-CCc----hhHHHHHHHHHHHCCCeEEEECChhh--------c-cCCCC-----ceEEEE
Confidence 3456667765 3355666 432 23445566666666666766655431 0 01100 011223
Q ss_pred ecC-ccHHHhhhccCccceeeccCchhHHH---HHhhCCeEecCcc
Q 042753 340 RGW-SQQVAILRHKAVGAFLTHCGWNSVLE---GVSAGVVMLTWPM 381 (473)
Q Consensus 340 ~~~-~pq~~lL~~~~v~~~ItHgG~~s~~e---al~~GvP~l~~P~ 381 (473)
.++ -+...++...+-..++--||.||+-| ++.+++|+++++.
T Consensus 78 ~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 78 TGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred CCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 344 44566555544445677788888765 5889999988874
No 333
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=47.49 E-value=1.7e+02 Score=29.57 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=55.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhh-hhhccCCCCCCeeEEEc-CCCCCCCCCChhhHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLL-DSLNANHPSTSLQSLVL-PQPKWPAGSPATRLLKF 82 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i-~~~~~~~~~~~~~f~~l-~~~~~~~~~~~~~~~~~ 82 (473)
|+|||++- .|-+ .+.+++++.+.|++|+.+.+....... .+. .. .+..+ |....+.
T Consensus 2 ~k~iLi~g---~g~~--a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~------ad-~~~~~~~~~~~~~---------- 59 (451)
T PRK08591 2 FDKILIAN---RGEI--ALRIIRACKELGIKTVAVHSTADRDALHVQL------AD-EAVCIGPAPSKKS---------- 59 (451)
T ss_pred cceEEEEC---CCHH--HHHHHHHHHHcCCeEEEEcChhhccCCCHhH------CC-EEEEeCCCCcccc----------
Confidence 78999883 3333 588889999999999988775332110 011 01 22222 2110000
Q ss_pred HHHHHHHh-hHHHHHHHhcCCCCCcEEEeCC--Ccc--hHHHHHHHhCCCcEEE
Q 042753 83 MRVLRELH-YPALLDWFKSHPSPPVAILSDF--FLG--WTQGLAAELGLPRVVF 131 (473)
Q Consensus 83 ~~~~~~~~-~~~l~~~l~~~~~~pD~VV~D~--~~~--~~~~~A~~~giP~v~~ 131 (473)
.. .+.+.++.+.. ++|+|+.-. ..- .....++++|+|++.-
T Consensus 60 ------y~d~~~l~~~a~~~--~id~I~p~~~~~~e~~~~~~~~e~~gi~~~g~ 105 (451)
T PRK08591 60 ------YLNIPAIISAAEIT--GADAIHPGYGFLSENADFAEICEDSGFTFIGP 105 (451)
T ss_pred ------cCCHHHHHHHHHHh--CCCEEEECCCccccCHHHHHHHHHCCCceECc
Confidence 11 24556667777 899998643 111 2356788999997763
No 334
>PRK08506 replicative DNA helicase; Provisional
Probab=47.25 E-value=2e+02 Score=29.30 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=34.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhh
Q 042753 8 ILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLL 48 (473)
Q Consensus 8 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 48 (473)
|++...|+.|-..-.+.+|....+.|+.|.|++.+.....+
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql 235 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQL 235 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHH
Confidence 56677899999999999999998899999999988654443
No 335
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=47.21 E-value=1.6e+02 Score=26.61 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=37.9
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhh
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLD 49 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~ 49 (473)
|...-+++.-.|+.|-..-.+.++.+-+++|..|.|++.....+.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~ 65 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVR 65 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHH
Confidence 44566788889999999988888877668899999999987665543
No 336
>PLN02735 carbamoyl-phosphate synthase
Probab=47.12 E-value=1.4e+02 Score=34.10 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=30.6
Q ss_pred CccEEEEEcCCCC--CCh----HHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 4 AGAHILVYPFPTS--GHI----IPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 4 ~~~~Il~~~~~~~--GH~----~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
.++|||++-.+.. |+. .....++++|.+.|++|+.+.+..
T Consensus 22 ~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np 67 (1102)
T PLN02735 22 DLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNP 67 (1102)
T ss_pred CCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCc
Confidence 3689998876542 433 447889999999999999998654
No 337
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=46.66 E-value=16 Score=29.74 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=26.8
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhh
Q 042753 17 GHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSL 51 (473)
Q Consensus 17 GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~ 51 (473)
-.+--.+-++..|.++||+|++++++.....++.+
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhc
Confidence 34455788899999999999999999776666554
No 338
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=46.23 E-value=1.7e+02 Score=27.84 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|||+|+..+ .-.++..+.|.++||+|..+.+.
T Consensus 1 mkIvf~G~~-----~~a~~~L~~L~~~~~~i~~Vvt~ 32 (309)
T PRK00005 1 MRIVFMGTP-----EFAVPSLKALLESGHEVVAVVTQ 32 (309)
T ss_pred CEEEEECCC-----HHHHHHHHHHHHCCCcEEEEECC
Confidence 477777433 24567788888889998877754
No 339
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=46.07 E-value=85 Score=30.36 Aligned_cols=101 Identities=17% Similarity=0.089 Sum_probs=57.9
Q ss_pred cEEEEEcCCCCC---C--hHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCe--eEEEcCCCCCCCCCChhh
Q 042753 6 AHILVYPFPTSG---H--IIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSL--QSLVLPQPKWPAGSPATR 78 (473)
Q Consensus 6 ~~Il~~~~~~~G---H--~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~--~f~~l~~~~~~~~~~~~~ 78 (473)
.-|++.|..+.| + ..-+..|++.|.++|++|.+++.+...+..++.... ..... ....+. ..
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~-~~~~~~~~~~~l~--------g~-- 249 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAA-LNTEQQAWCRNLA--------GE-- 249 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHh-cccccccceeecc--------CC--
Confidence 345666644322 2 224789999998889999999887665544433110 00000 001110 00
Q ss_pred HHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEec
Q 042753 79 LLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSP 133 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~ 133 (473)
.-..++..+++ +-|++|+.- +....+|..+|+|+|.++.
T Consensus 250 ----------~sL~el~ali~----~a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 250 ----------TQLEQAVILIA----ACKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred ----------CCHHHHHHHHH----hCCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 11233444555 458999664 4567999999999999864
No 340
>CHL00067 rps2 ribosomal protein S2
Probab=46.00 E-value=2.3e+02 Score=25.67 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=25.3
Q ss_pred CCcEEEeCCCcc--hHHHHHHHhCCCcEEEecchH
Q 042753 104 PPVAILSDFFLG--WTQGLAAELGLPRVVFSPSGA 136 (473)
Q Consensus 104 ~pD~VV~D~~~~--~~~~~A~~~giP~v~~~~~~~ 136 (473)
.||+||+-.... .+..=|.++|||+|.++-+..
T Consensus 161 ~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~ 195 (230)
T CHL00067 161 LPDIVIIIDQQEEYTALRECRKLGIPTISILDTNC 195 (230)
T ss_pred CCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCC
Confidence 689888554433 577889999999999976644
No 341
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=45.92 E-value=1.6e+02 Score=24.93 Aligned_cols=87 Identities=20% Similarity=0.164 Sum_probs=53.1
Q ss_pred CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhH
Q 042753 13 FPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYP 92 (473)
Q Consensus 13 ~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (473)
.++.|++- ..++++|.++||+|+.++.... ++... ++++++...... .+
T Consensus 4 ~GatG~vG--~~l~~~L~~~~~~V~~~~R~~~--~~~~~------~~~~~~~~d~~d---------------------~~ 52 (183)
T PF13460_consen 4 FGATGFVG--RALAKQLLRRGHEVTALVRSPS--KAEDS------PGVEIIQGDLFD---------------------PD 52 (183)
T ss_dssp ETTTSHHH--HHHHHHHHHTTSEEEEEESSGG--GHHHC------TTEEEEESCTTC---------------------HH
T ss_pred ECCCChHH--HHHHHHHHHCCCEEEEEecCch--hcccc------cccccceeeehh---------------------hh
Confidence 34555543 5689999999999999997744 23321 368877655210 02
Q ss_pred HHHHHHhcCCCCCcEEEeCCCc--------chHHHHHHHhCCCcEEEecc
Q 042753 93 ALLDWFKSHPSPPVAILSDFFL--------GWTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 93 ~l~~~l~~~~~~pD~VV~D~~~--------~~~~~~A~~~giP~v~~~~~ 134 (473)
.+.+.++ +.|.||+-... -....++++.|++.+.+.++
T Consensus 53 ~~~~al~----~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~ 98 (183)
T PF13460_consen 53 SVKAALK----GADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSS 98 (183)
T ss_dssp HHHHHHT----TSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred hhhhhhh----hcchhhhhhhhhcccccccccccccccccccccceeeec
Confidence 3344444 45777765541 12345567779988777554
No 342
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=45.85 E-value=28 Score=31.92 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=20.3
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 17 GHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 17 GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|=-.-.-.|+++|+++||+|+++++.
T Consensus 17 GLgdv~~~L~kaL~~~G~~V~Vi~P~ 42 (245)
T PF08323_consen 17 GLGDVVGSLPKALAKQGHDVRVIMPK 42 (245)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE-
T ss_pred cHhHHHHHHHHHHHhcCCeEEEEEcc
Confidence 34455778999999999999999985
No 343
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=45.62 E-value=97 Score=29.54 Aligned_cols=33 Identities=18% Similarity=-0.044 Sum_probs=25.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~ 43 (473)
|+|||+...++. + ++++.|.+. |++|..+....
T Consensus 1 ~~~vLv~g~~~~-~-----~~~~~l~~~~~g~~vi~~d~~~ 35 (326)
T PRK12767 1 MMNILVTSAGRR-V-----QLVKALKKSLLKGRVIGADISE 35 (326)
T ss_pred CceEEEecCCcc-H-----HHHHHHHHhccCCEEEEECCCC
Confidence 789999887433 2 789999998 59988876653
No 344
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=45.50 E-value=1.3e+02 Score=26.82 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=34.3
Q ss_pred hhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEE
Q 042753 261 HDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFV 306 (473)
Q Consensus 261 ~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 306 (473)
+.+.+|+.+ ..+.+.||=+-|.........++.-++|++.+..+.
T Consensus 22 ~~i~n~l~g-~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~ 66 (224)
T COG3340 22 PFIANFLQG-KRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVS 66 (224)
T ss_pred HHHHHHhcC-CCceEEEEecCccccchHHHHHHHHHHHHHcCCeee
Confidence 344555555 256899999988877777788889999999998764
No 345
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=45.41 E-value=1.1e+02 Score=28.45 Aligned_cols=87 Identities=20% Similarity=0.180 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhHHHHHHHh
Q 042753 20 IPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPALLDWFK 99 (473)
Q Consensus 20 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 99 (473)
.-+..|++.|.++|++|.+++.++..+..+...... +......+ ... .-..++..+++
T Consensus 140 ~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~--~~~~~~~~--------~~~------------~~l~e~~~li~ 197 (279)
T cd03789 140 ERFAALADRLLARGARVVLTGGPAERELAEEIAAAL--GGPRVVNL--------AGK------------TSLRELAALLA 197 (279)
T ss_pred HHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhc--CCCccccC--------cCC------------CCHHHHHHHHH
Confidence 358899999999999999998886655544431100 00011100 000 01123445555
Q ss_pred cCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecc
Q 042753 100 SHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 100 ~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~ 134 (473)
+-|++|.-- .+...+|..+|+|++.++..
T Consensus 198 ----~~~l~I~~D--sg~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 198 ----RADLVVTND--SGPMHLAAALGTPTVALFGP 226 (279)
T ss_pred ----hCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 449999653 35778889999999998654
No 346
>PRK06270 homoserine dehydrogenase; Provisional
Probab=45.09 E-value=2e+02 Score=27.79 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=35.5
Q ss_pred cHHHhhhccCccceee------ccC---chhHHHHHhhCCeEec---CcccccchhhHHHHHHHhcceEEec
Q 042753 344 QQVAILRHKAVGAFLT------HCG---WNSVLEGVSAGVVMLT---WPMDADQYTNAQLLVDQLGVGIRVG 403 (473)
Q Consensus 344 pq~~lL~~~~v~~~It------HgG---~~s~~eal~~GvP~l~---~P~~~DQ~~na~rv~~~~G~G~~l~ 403 (473)
...++|..+++..+|- |+| ..-+.+||.+|+++|+ -|+...-....+... +.|+.+...
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~-~~g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAK-KNGVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHH-HcCCEEEEe
Confidence 4566776554433554 443 4456899999999999 477543333434333 437766653
No 347
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=44.21 E-value=22 Score=30.90 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=31.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhh
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLD 49 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~ 49 (473)
||++...++.|-+.- ..+.++|.++|++|.++.++.....+.
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 455555555555554 789999999999999999997766654
No 348
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=43.88 E-value=43 Score=21.46 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHhCCcHHHHHHHHHH
Q 042753 411 ESDELARLLAQSVDGPRRERLKAREL 436 (473)
Q Consensus 411 ~~~~l~~~i~~~l~~~~~~~~~a~~~ 436 (473)
+.++|..||..+.++.-++++.|+++
T Consensus 1 tee~l~~Ai~~v~~g~~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 47889999999998722777777765
No 349
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=43.77 E-value=26 Score=29.75 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=19.6
Q ss_pred ceeeccC------chhHHHHHhhCCeEecCc
Q 042753 356 AFLTHCG------WNSVLEGVSAGVVMLTWP 380 (473)
Q Consensus 356 ~~ItHgG------~~s~~eal~~GvP~l~~P 380 (473)
.+++++| .+.+.||...++|||++.
T Consensus 62 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 62 ALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred EEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 3666666 347788999999999995
No 350
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=43.36 E-value=52 Score=29.87 Aligned_cols=100 Identities=12% Similarity=0.136 Sum_probs=52.5
Q ss_pred CCCcEEEEEeCCcc---cCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecC--cc-
Q 042753 271 RDESVVYVCFGSRY---VLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGW--SQ- 344 (473)
Q Consensus 271 ~~~~~V~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~--~p- 344 (473)
.+++.|.+..|+.. .++.+.+.++++.|.+.++++++.-+.. +.+.+ +-+.+.+......+.+..- +.
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~l~e 176 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE-----EQEKE-IADQIAAGLQNPVINLAGKTSLRE 176 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH-----HHHHH-HHHHHHTTHTTTTEEETTTS-HHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch-----HHHHH-HHHHHHHhcccceEeecCCCCHHH
Confidence 36788888888864 3678889999999988876655444432 10000 0011111111112223222 22
Q ss_pred HHHhhhccCccceeeccCchhHHHHHhhCCeEecC
Q 042753 345 QVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTW 379 (473)
Q Consensus 345 q~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~ 379 (473)
...++.++++ +|+.- .|.++=|.+.|+|+|++
T Consensus 177 ~~ali~~a~~--~I~~D-tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 177 LAALISRADL--VIGND-TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHTSSE--EEEES-SHHHHHHHHTT--EEEE
T ss_pred HHHHHhcCCE--EEecC-ChHHHHHHHHhCCEEEE
Confidence 3458888885 66654 57788899999999988
No 351
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=42.82 E-value=38 Score=31.95 Aligned_cols=48 Identities=21% Similarity=0.398 Sum_probs=35.8
Q ss_pred CCccEEEEEc-CCCCCChHH--------HHHHHHHHHhCCCeEEEEeCCCChhhhhhh
Q 042753 3 PAGAHILVYP-FPTSGHIIP--------LLDLTNRLLTLGLNVTVLITQNNLPLLDSL 51 (473)
Q Consensus 3 ~~~~~Il~~~-~~~~GH~~p--------~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~ 51 (473)
.+..+|++++ +|. .|..+ ...||+.|.+.|.+|++++.+.+...+++.
T Consensus 38 ~~~~~VlI~TGFpv-~~~~~~ETDGP~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~ 94 (291)
T PF14336_consen 38 SHAKSVLIVTGFPV-PPAPPPETDGPPGAAALARALQALGKEVVIVTDERCAPVVKAA 94 (291)
T ss_pred cCCCcEEEEeCCCC-CCCCCCCCCChHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHH
Confidence 4567788777 443 33332 688999999999999999998777766655
No 352
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=42.77 E-value=1.2e+02 Score=28.64 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=34.1
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
+..|.+.-.++.|-..-+..|+..|.++|+.|.++..+..
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4556677788999999999999999999999999887644
No 353
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=42.72 E-value=1.3e+02 Score=30.75 Aligned_cols=94 Identities=15% Similarity=0.038 Sum_probs=53.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFM 83 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~ 83 (473)
+|||++-.+++.| +|+++|.+. |++|.++-.+.+..... . ... ..-.+..++..
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~~Npg~~~-~-~~~--~~~~~~~~~~~--------------- 56 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSYLNPGINS-V-VKA--TGGEYFIGNIN--------------- 56 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECCCChhhee-e-ccc--ccCceEecCCC---------------
Confidence 5899988888777 578888876 99988885543321111 0 000 00011211110
Q ss_pred HHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcch---HHHHHHHhCCCcEEE
Q 042753 84 RVLRELHYPALLDWFKSHPSPPVAILSDFFLGW---TQGLAAELGLPRVVF 131 (473)
Q Consensus 84 ~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~---~~~~A~~~giP~v~~ 131 (473)
-.+.+.++.++. ++|+||...-... .....+++|+|+..-
T Consensus 57 ------d~~~l~~~a~~~--~id~Vi~g~E~~l~~glad~l~~~Gi~v~Gp 99 (486)
T PRK05784 57 ------SPEEVKKVAKEV--NPDLVVIGPEEPLFAGVADVLREEGFPVFGA 99 (486)
T ss_pred ------CHHHHHHHHHHh--CCCEEEECCchHHHHHHHHHHHhCCCCEECC
Confidence 012345566777 8999998665442 235667789997653
No 354
>PRK00784 cobyric acid synthase; Provisional
Probab=42.54 E-value=3.4e+02 Score=27.81 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=28.8
Q ss_pred ccEEEEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 042753 5 GAHILVYPF-PTSGHIIPLLDLTNRLLTLGLNVTVLIT 41 (473)
Q Consensus 5 ~~~Il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 41 (473)
|++|++... ...|-..-...|++.|.++|++|..+=+
T Consensus 2 ~~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 2 AKALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 345655544 4569999999999999999999887644
No 355
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=42.51 E-value=1.5e+02 Score=32.28 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=31.8
Q ss_pred ccEEEEEc--CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 5 GAHILVYP--FPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 5 ~~~Il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
..|+++++ .|+-|-..-...||..|+..|++|.++-.+..
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r 571 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 45666555 56778899999999999999999999876543
No 356
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=42.45 E-value=24 Score=30.39 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=20.9
Q ss_pred hccCccceeeccCchhHHHHHhhCCeEecCccc
Q 042753 350 RHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMD 382 (473)
Q Consensus 350 ~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~ 382 (473)
..+++ +|+.||...+..... ++|+|-+|..
T Consensus 33 ~g~dV--iIsRG~ta~~lr~~~-~iPVV~I~~s 62 (176)
T PF06506_consen 33 EGADV--IISRGGTAELLRKHV-SIPVVEIPIS 62 (176)
T ss_dssp TT-SE--EEEEHHHHHHHHCC--SS-EEEE---
T ss_pred cCCeE--EEECCHHHHHHHHhC-CCCEEEECCC
Confidence 34555 999999999999977 9999999984
No 357
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=42.27 E-value=24 Score=30.59 Aligned_cols=43 Identities=33% Similarity=0.395 Sum_probs=31.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLD 49 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~ 49 (473)
+||++...++.| ..-...+.++|.++|++|.++.++.....+.
T Consensus 1 k~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 1 KKILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred CEEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 467766665554 4455699999999999999999986544443
No 358
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=42.21 E-value=68 Score=30.43 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=27.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNL 45 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 45 (473)
|+||+|+-.|.. .....++|.+.||+|.-+.+....
T Consensus 1 ~mkivF~GTp~f-----a~~~L~~L~~~~~eivaV~Tqpdk 36 (307)
T COG0223 1 MMRIVFFGTPEF-----AVPSLEALIEAGHEIVAVVTQPDK 36 (307)
T ss_pred CcEEEEEcCchh-----hHHHHHHHHhCCCceEEEEeCCCC
Confidence 689999887754 356678888899999988886543
No 359
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=42.17 E-value=43 Score=29.74 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=25.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
|++|.+. +.|++ -.+||+.|.+.||+|++.+....
T Consensus 1 m~~~~i~---GtGni--G~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 1 MMIIAII---GTGNI--GSALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred CcEEEEe---ccChH--HHHHHHHHHhCCCeEEEecCCCh
Confidence 5556554 33433 36789999999999999987654
No 360
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=42.12 E-value=39 Score=34.35 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=39.8
Q ss_pred hccCccceeeccCchhHHHHHhh----CCeEecCcccccchhhHHHHHHHhc-ceEEeccCCCCCCCHHHHHHHHHHHhC
Q 042753 350 RHKAVGAFLTHCGWNSVLEGVSA----GVVMLTWPMDADQYTNAQLLVDQLG-VGIRVGEGTRNIPESDELARLLAQSVD 424 (473)
Q Consensus 350 ~~~~v~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~rv~~~~G-~G~~l~~~~~~~~~~~~l~~~i~~~l~ 424 (473)
..+++ +|+=||=||++.|... ++|++.+ ..| +|- + ..++.+++.++|+++++
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGI---------------N~G~LGF-L-----t~i~~~e~~~~Le~il~ 317 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPF---------------SMGSLGF-M-----TPFHSEQYRDCLDAILK 317 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEE---------------eCCCcce-e-----cccCHHHHHHHHHHHHc
Confidence 34565 9999999999999774 5677766 112 332 2 25678999999999998
Q ss_pred Cc
Q 042753 425 GP 426 (473)
Q Consensus 425 ~~ 426 (473)
++
T Consensus 318 G~ 319 (508)
T PLN02935 318 GP 319 (508)
T ss_pred CC
Confidence 75
No 361
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=41.92 E-value=1.6e+02 Score=29.54 Aligned_cols=66 Identities=18% Similarity=0.124 Sum_probs=39.6
Q ss_pred ccceeeccCc------hhHHHHHhhCCeEecCc-------------ccccchhhHHHHHHHhcceEEeccCCCCCC----
Q 042753 354 VGAFLTHCGW------NSVLEGVSAGVVMLTWP-------------MDADQYTNAQLLVDQLGVGIRVGEGTRNIP---- 410 (473)
Q Consensus 354 v~~~ItHgG~------~s~~eal~~GvP~l~~P-------------~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~---- 410 (473)
.+.+++|.|- +.+.||.+.++|+|++- ...||....+-+. ..-..+.. ..+.
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~t---k~~~~v~~--~~~~~~~~ 138 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVLTADRPPELRGCGANQTIDQPGLFGSYV---RWSLDLPL--PEADEPLA 138 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEEeCCCCHHHhCCCCCcccchhhHHhhcc---ceeeeCCC--CCccccHH
Confidence 3347888774 47789999999999982 1235555555444 23344431 1111
Q ss_pred -CHHHHHHHHHHHhC
Q 042753 411 -ESDELARLLAQSVD 424 (473)
Q Consensus 411 -~~~~l~~~i~~~l~ 424 (473)
-.+.|.++++..++
T Consensus 139 ~~~~~i~~A~~~a~~ 153 (432)
T TIGR00173 139 YLRSTVDRAVAQAQG 153 (432)
T ss_pred HHHHHHHHHHHHhhC
Confidence 23667788877765
No 362
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=41.81 E-value=1.3e+02 Score=34.31 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=30.5
Q ss_pred CccEEEEEcCCC--CCChH----HHHHHHHHHHhCCCeEEEEeCCC
Q 042753 4 AGAHILVYPFPT--SGHII----PLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 4 ~~~~Il~~~~~~--~GH~~----p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
.+.|||++-.+. .|+.. .-..++++|.+.||+|.++.+..
T Consensus 6 ~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi~v~~~p 51 (1066)
T PRK05294 6 DIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNP 51 (1066)
T ss_pred CCCEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEEEEcCCc
Confidence 389999887665 36542 34678999999999999988654
No 363
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=41.62 E-value=50 Score=31.72 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=31.6
Q ss_pred HhhHHHHHHHhcCCCCCcEEEeCCCcchH----------HHHHHHhCCCcEEE
Q 042753 89 LHYPALLDWFKSHPSPPVAILSDFFLGWT----------QGLAAELGLPRVVF 131 (473)
Q Consensus 89 ~~~~~l~~~l~~~~~~pD~VV~D~~~~~~----------~~~A~~~giP~v~~ 131 (473)
.....+.+.+++. +||+||+.+.+..+ ..+.++++||.++-
T Consensus 67 ea~~~i~~mv~~~--~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 67 EALKKILEMVKKL--KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHHHhc--CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 4556788889999 99999999886522 13457899999874
No 364
>PRK10637 cysG siroheme synthase; Provisional
Probab=41.62 E-value=1.3e+02 Score=30.47 Aligned_cols=150 Identities=13% Similarity=0.045 Sum_probs=81.5
Q ss_pred HhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccH
Q 042753 266 WLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQ 345 (473)
Q Consensus 266 ~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq 345 (473)
|++- .+++++.|.-|..+. .=+..|.+.+.++.++.+. +.+++.+.....++....---+
T Consensus 7 ~~~l-~~~~vlvvGgG~vA~-------rk~~~ll~~ga~v~visp~------------~~~~~~~l~~~~~i~~~~~~~~ 66 (457)
T PRK10637 7 FCQL-RDRDCLLVGGGDVAE-------RKARLLLDAGARLTVNALA------------FIPQFTAWADAGMLTLVEGPFD 66 (457)
T ss_pred EEEc-CCCEEEEECCCHHHH-------HHHHHHHHCCCEEEEEcCC------------CCHHHHHHHhCCCEEEEeCCCC
Confidence 4444 468889898888763 1245566678777665443 2234433323334433222224
Q ss_pred HHhhhccCccceeeccCchhHHHHHh-----hCCeEecCcccccchhhHH-----HHHHHhcceEEeccCCCCCCCHHHH
Q 042753 346 VAILRHKAVGAFLTHCGWNSVLEGVS-----AGVVMLTWPMDADQYTNAQ-----LLVDQLGVGIRVGEGTRNIPESDEL 415 (473)
Q Consensus 346 ~~lL~~~~v~~~ItHgG~~s~~eal~-----~GvP~l~~P~~~DQ~~na~-----rv~~~~G~G~~l~~~~~~~~~~~~l 415 (473)
...|..+.+ +|.--+-..+.+.++ .|+++-+ .|++..+. .+.+. ++-+.+..+...-.-+..|
T Consensus 67 ~~dl~~~~l--v~~at~d~~~n~~i~~~a~~~~~lvN~----~d~~~~~~f~~pa~~~~g-~l~iaisT~G~sP~~a~~l 139 (457)
T PRK10637 67 ESLLDTCWL--AIAATDDDAVNQRVSEAAEARRIFCNV----VDAPKAASFIMPSIIDRS-PLMVAVSSGGTSPVLARLL 139 (457)
T ss_pred hHHhCCCEE--EEECCCCHHHhHHHHHHHHHcCcEEEE----CCCcccCeEEEeeEEecC-CEEEEEECCCCCcHHHHHH
Confidence 455666665 677766666666554 4555533 35544333 22212 3455555222344455678
Q ss_pred HHHHHHHhCCc-HHHHHHHHHHHHHHHH
Q 042753 416 ARLLAQSVDGP-RRERLKARELSGAALS 442 (473)
Q Consensus 416 ~~~i~~~l~~~-~~~~~~a~~~~~~~~~ 442 (473)
++.|++++... ..+-+.+.++++.+++
T Consensus 140 r~~ie~~~~~~~~~~~~~~~~~R~~~k~ 167 (457)
T PRK10637 140 REKLESLLPQHLGQVAKYAGQLRGRVKQ 167 (457)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 88888888543 4555566666666654
No 365
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=41.60 E-value=2.3e+02 Score=26.23 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHhCCCcEEEecch
Q 042753 92 PALLDWFKSHPSPPVAILSDFFLG--WTQGLAAELGLPRVVFSPSG 135 (473)
Q Consensus 92 ~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~giP~v~~~~~~ 135 (473)
..+.+.+++. +..+|+++.... .+-.+|+..|+|.+.+.+..
T Consensus 207 ~~l~~~ik~~--~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~ 250 (266)
T cd01018 207 KRLIDLAKEK--GVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLA 250 (266)
T ss_pred HHHHHHHHHc--CCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcH
Confidence 4556678888 999999998766 45589999999998876554
No 366
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=41.59 E-value=1.7e+02 Score=27.37 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=19.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCh
Q 042753 23 LDLTNRLLTLGLNVTVLITQNNL 45 (473)
Q Consensus 23 l~La~~L~~rGh~Vt~~~~~~~~ 45 (473)
.++|..++++|++|.+++.+...
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~ 25 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAH 25 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCC
Confidence 46888999999999999998664
No 367
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=41.57 E-value=2e+02 Score=30.08 Aligned_cols=25 Identities=4% Similarity=0.129 Sum_probs=20.3
Q ss_pred ceeeccCc------hhHHHHHhhCCeEecCc
Q 042753 356 AFLTHCGW------NSVLEGVSAGVVMLTWP 380 (473)
Q Consensus 356 ~~ItHgG~------~s~~eal~~GvP~l~~P 380 (473)
++++|.|- +.+.||-..++|+|++.
T Consensus 79 v~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 79 VCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred EEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 47777774 47899999999999884
No 368
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=41.53 E-value=49 Score=30.23 Aligned_cols=38 Identities=18% Similarity=0.074 Sum_probs=32.1
Q ss_pred ccEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|+.|.+.. -+|-|-..-.-.||..|+++|+.|..+=-.
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 67776666 677799999999999999999999887643
No 369
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=41.53 E-value=2.8e+02 Score=26.66 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=55.2
Q ss_pred EEEEEcCCCCC----ChHHHHHHHHHHHhCCCeEEEEeCCCChh--hhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHH
Q 042753 7 HILVYPFPTSG----HIIPLLDLTNRLLTLGLNVTVLITQNNLP--LLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLL 80 (473)
Q Consensus 7 ~Il~~~~~~~G----H~~p~l~La~~L~~rGh~Vt~~~~~~~~~--~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 80 (473)
.|++.|..+.. ...-+..|++.|.++|.+|.+++.+...+ .++..... . ..-....+ ...
T Consensus 183 ~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~-~-~~~~~~~l--------~g~---- 248 (344)
T TIGR02201 183 YIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQG-C-QTPRVTSL--------AGK---- 248 (344)
T ss_pred EEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhh-C-CCCccccc--------CCC----
Confidence 45565543321 12346789999988899999888764222 22222100 0 00000000 000
Q ss_pred HHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEec
Q 042753 81 KFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSP 133 (473)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~ 133 (473)
.-..++..+++ +-|++|+.- ++...+|..+|+|+|.++.
T Consensus 249 --------~sL~el~ali~----~a~l~Vs~D--SGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 249 --------LTLPQLAALID----HARLFIGVD--SVPMHMAAALGTPLVALFG 287 (344)
T ss_pred --------CCHHHHHHHHH----hCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 11234455565 449999763 5678999999999999864
No 370
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=41.52 E-value=2.7e+02 Score=26.71 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=33.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCh
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNL 45 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 45 (473)
-|+++-.+|.|-..-+..||..|..+|++|.++..+.++
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 445777888899999999999999999999999988654
No 371
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=41.27 E-value=1.1e+02 Score=32.29 Aligned_cols=66 Identities=8% Similarity=0.105 Sum_probs=39.7
Q ss_pred ccceeeccC------chhHHHHHhhCCeEecCcc-------------cccchhhHHHHHHHhcceEEeccCCCCCCCHHH
Q 042753 354 VGAFLTHCG------WNSVLEGVSAGVVMLTWPM-------------DADQYTNAQLLVDQLGVGIRVGEGTRNIPESDE 414 (473)
Q Consensus 354 v~~~ItHgG------~~s~~eal~~GvP~l~~P~-------------~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~ 414 (473)
.+++++|.| .+.+.+|.+.++|+|++.- ..||....+.+. ..-..++ ...--.+.
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~t---k~s~~v~---~~~~i~~~ 137 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPIT---KHNFQIK---KPEEIPEI 137 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccHhhHHhhhc---ceEEecC---CHHHHHHH
Confidence 344788877 4588999999999998831 235666666555 2344444 22222344
Q ss_pred HHHHHHHHhCC
Q 042753 415 LARLLAQSVDG 425 (473)
Q Consensus 415 l~~~i~~~l~~ 425 (473)
|.+|++..++.
T Consensus 138 i~~A~~~A~~~ 148 (586)
T PRK06276 138 FRAAFEIAKTG 148 (586)
T ss_pred HHHHHHHhcCC
Confidence 55566555543
No 372
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=41.19 E-value=37 Score=28.88 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=20.2
Q ss_pred ceeeccCc------hhHHHHHhhCCeEecCc
Q 042753 356 AFLTHCGW------NSVLEGVSAGVVMLTWP 380 (473)
Q Consensus 356 ~~ItHgG~------~s~~eal~~GvP~l~~P 380 (473)
.+++|+|- +.+.||...++|||++.
T Consensus 63 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 63 AVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred EEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 37778774 46789999999999994
No 373
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.16 E-value=46 Score=30.92 Aligned_cols=52 Identities=10% Similarity=0.008 Sum_probs=36.9
Q ss_pred ceeeccCchhHHHHHhh-----CCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc
Q 042753 356 AFLTHCGWNSVLEGVSA-----GVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 356 ~~ItHgG~~s~~eal~~-----GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~ 426 (473)
++|+=||=||++.|+.. .+|++.+-.. |...= -.+.+.+++.++++++++++
T Consensus 42 ~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~----------------G~lGF---L~~~~~~~~~~~l~~i~~g~ 98 (264)
T PRK03501 42 IIVSIGGDGTFLQAVRKTGFREDCLYAGISTK----------------DQLGF---YCDFHIDDLDKMIQAITKEE 98 (264)
T ss_pred EEEEECCcHHHHHHHHHhcccCCCeEEeEecC----------------CCCeE---cccCCHHHHHHHHHHHHcCC
Confidence 49999999999999874 5676666210 21111 23567889999999998865
No 374
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=40.74 E-value=2.4e+02 Score=26.36 Aligned_cols=41 Identities=12% Similarity=0.047 Sum_probs=35.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNL 45 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 45 (473)
..+|+++-.++.|-..-+..|+..+..+|+.|.+++...++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 36788888889999999999999999899999999988664
No 375
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=40.67 E-value=1.8e+02 Score=25.99 Aligned_cols=91 Identities=19% Similarity=0.119 Sum_probs=56.1
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhHH
Q 042753 14 PTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPA 93 (473)
Q Consensus 14 ~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (473)
++.|.+ -..+++.|.+.||+|+.++.+...+....... .+...+..++. -.+.
T Consensus 5 GatG~~--G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~----~g~~vv~~d~~---------------------~~~~ 57 (233)
T PF05368_consen 5 GATGNQ--GRSVVRALLSAGFSVRALVRDPSSDRAQQLQA----LGAEVVEADYD---------------------DPES 57 (233)
T ss_dssp TTTSHH--HHHHHHHHHHTTGCEEEEESSSHHHHHHHHHH----TTTEEEES-TT----------------------HHH
T ss_pred CCccHH--HHHHHHHHHhCCCCcEEEEeccchhhhhhhhc----ccceEeecccC---------------------CHHH
Confidence 444543 37889999999999999999875544443311 25666644421 1244
Q ss_pred HHHHHhcCCCCCcEEEeCCCcc---------hHHHHHHHhCCCcEEEecch
Q 042753 94 LLDWFKSHPSPPVAILSDFFLG---------WTQGLAAELGLPRVVFSPSG 135 (473)
Q Consensus 94 l~~~l~~~~~~pD~VV~D~~~~---------~~~~~A~~~giP~v~~~~~~ 135 (473)
+.+.++ +.|+|++-.... -...+|.+.||+.+.+++..
T Consensus 58 l~~al~----g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~ 104 (233)
T PF05368_consen 58 LVAALK----GVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFG 104 (233)
T ss_dssp HHHHHT----TCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEES
T ss_pred HHHHHc----CCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEec
Confidence 555665 457777544411 23578888999999876553
No 376
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=40.55 E-value=2.6e+02 Score=24.67 Aligned_cols=105 Identities=19% Similarity=0.164 Sum_probs=60.7
Q ss_pred CccEEEEEcCC-CCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHH
Q 042753 4 AGAHILVYPFP-TSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKF 82 (473)
Q Consensus 4 ~~~~Il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 82 (473)
.|+++-|+..| ..|-..-++.-++....+|-.|.++.+.-....-...+.+ -.|.+...... ++.
T Consensus 2 ~~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R~~~~~V~S--r~G~~~~A~~i------~~~------ 67 (201)
T COG1435 2 KMGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYGVGKVSS--RIGLSSEAVVI------PSD------ 67 (201)
T ss_pred ceEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccccccccceeee--ccCCcccceec------CCh------
Confidence 36777555544 5599999999999999999999999986332211111100 01222222111 111
Q ss_pred HHHHHHHhhHHHHHHHhcCCC--CCcEEEeCCCcch-------HHHHHHHhCCCcEEE
Q 042753 83 MRVLRELHYPALLDWFKSHPS--PPVAILSDFFLGW-------TQGLAAELGLPRVVF 131 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~--~pD~VV~D~~~~~-------~~~~A~~~giP~v~~ 131 (473)
..+.+.+..... ..|+|+.|...++ ...+|..+|||++..
T Consensus 68 ---------~~i~~~i~~~~~~~~~~~v~IDEaQF~~~~~v~~l~~lad~lgi~Vi~~ 116 (201)
T COG1435 68 ---------TDIFDEIAALHEKPPVDCVLIDEAQFFDEELVYVLNELADRLGIPVICY 116 (201)
T ss_pred ---------HHHHHHHHhcccCCCcCEEEEehhHhCCHHHHHHHHHHHhhcCCEEEEe
Confidence 122222332211 3689999987553 247788889998884
No 377
>PLN02929 NADH kinase
Probab=40.28 E-value=41 Score=31.85 Aligned_cols=63 Identities=13% Similarity=0.207 Sum_probs=40.3
Q ss_pred ceeeccCchhHHHHHh---hCCeEecCccccc------chhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc
Q 042753 356 AFLTHCGWNSVLEGVS---AGVVMLTWPMDAD------QYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 356 ~~ItHgG~~s~~eal~---~GvP~l~~P~~~D------Q~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~ 426 (473)
++|+-||=||++.|.. .++|++.+=.... ++.+.-.-. . -+|-.- ..+.+++.++|++++++.
T Consensus 67 lvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~-r-~lGfL~------~~~~~~~~~~L~~il~g~ 138 (301)
T PLN02929 67 LVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDAR-R-STGHLC------AATAEDFEQVLDDVLFGR 138 (301)
T ss_pred EEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccccc-c-Cccccc------cCCHHHHHHHHHHHHcCC
Confidence 4999999999999855 4689888744311 111111100 1 244222 467889999999999875
No 378
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.23 E-value=42 Score=31.32 Aligned_cols=54 Identities=19% Similarity=0.142 Sum_probs=39.1
Q ss_pred ccCccceeeccCchhHHHHHhh-CCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc
Q 042753 351 HKAVGAFLTHCGWNSVLEGVSA-GVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 351 ~~~v~~~ItHgG~~s~~eal~~-GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~ 426 (473)
.+++ +|+=||-||++.+... ..|++.+ +.|...= -...+.+++.++++++++++
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGI-----------------N~G~lGF---L~~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGI-----------------NMGGLGF---LTEIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEE-----------------ECCCCcc---CcccCHHHHHHHHHHHHcCC
Confidence 4554 9999999999999874 5677666 2232211 23577899999999999875
No 379
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=39.98 E-value=19 Score=30.31 Aligned_cols=32 Identities=25% Similarity=0.152 Sum_probs=24.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
||.++-.+.+| .++|..|.++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G-----~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWG-----TALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHH-----HHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHH-----HHHHHHHHHcCCEEEEEeccH
Confidence 45555554444 489999999999999999974
No 380
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=39.90 E-value=1.3e+02 Score=28.13 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=32.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC-C-CeEEEEeCCCCh
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTL-G-LNVTVLITQNNL 45 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~r-G-h~Vt~~~~~~~~ 45 (473)
.|+|+-..|.|-..-...||..+..+ | +.|.+++.+.+.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 34566667889999999999999886 6 999999998764
No 381
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=39.73 E-value=94 Score=32.60 Aligned_cols=27 Identities=7% Similarity=0.281 Sum_probs=21.5
Q ss_pred ccceeeccCch------hHHHHHhhCCeEecCc
Q 042753 354 VGAFLTHCGWN------SVLEGVSAGVVMLTWP 380 (473)
Q Consensus 354 v~~~ItHgG~~------s~~eal~~GvP~l~~P 380 (473)
.+++++|.|-| .+.||...++|+|++-
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 33488888855 6789999999999883
No 382
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=39.59 E-value=32 Score=30.69 Aligned_cols=111 Identities=13% Similarity=0.051 Sum_probs=60.8
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEeCCC-ChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHH--HhhHH
Q 042753 17 GHIIPLLDLTNRLLTLGLNVTVLITQN-NLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRE--LHYPA 93 (473)
Q Consensus 17 GH~~p~l~La~~L~~rGh~Vt~~~~~~-~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 93 (473)
.|+...+.+...++.||=.|.|+++.. +.+.++...... .+......-. .++- .+.......+.. ...+.
T Consensus 92 ~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~--~gy~~~~~w~---~G~l--TN~~~l~g~~~~~~~~~pd 164 (251)
T KOG0832|consen 92 SYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRA--GGYSHNRKWL---GGLL--TNARELFGALVRKFLSLPD 164 (251)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHh--cCceeeeeec---ccee--ecchhhcccccccccCCCc
Confidence 567778888889999999999999874 344444331100 0222211110 0110 011111111111 11233
Q ss_pred HHHHHhcCCCCCcEEEe-CCCcc-hHHHHHHHhCCCcEEEecchH
Q 042753 94 LLDWFKSHPSPPVAILS-DFFLG-WTQGLAAELGLPRVVFSPSGA 136 (473)
Q Consensus 94 l~~~l~~~~~~pD~VV~-D~~~~-~~~~~A~~~giP~v~~~~~~~ 136 (473)
..-++... .+||||+ |.... .++.=|.+++||+|.+.-..+
T Consensus 165 ~~~f~~t~--~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~ 207 (251)
T KOG0832|consen 165 ALCFLPTL--TPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNC 207 (251)
T ss_pred ceeecccC--CcceeEecCcccccHHHHHHHHhCCCeEEEecCCC
Confidence 33445555 7898885 55444 677889999999999866554
No 383
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=39.48 E-value=63 Score=28.15 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=22.0
Q ss_pred CCCCccEEE-EEcCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 042753 1 MLPAGAHIL-VYPFPTSGHIIPLLDLTNRLLTLGLNVTVL 39 (473)
Q Consensus 1 ~~~~~~~Il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 39 (473)
|++.|+||| +.++|-.+|-.-...+.+ ..+.+++|++.
T Consensus 1 ~~~~~~kiLiI~aHP~~~~S~~n~~l~~-~~~~~~~v~~~ 39 (184)
T PRK04930 1 MMSQPPKVLLLYAHPESQDSVANRVLLK-PAQQLEHVTVH 39 (184)
T ss_pred CCCCCCEEEEEECCCCcccCHHHHHHHH-HHHcCCceEEE
Confidence 788899997 445665554333333333 44556666654
No 384
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=39.37 E-value=58 Score=33.56 Aligned_cols=48 Identities=15% Similarity=0.092 Sum_probs=39.2
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhh
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDS 50 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 50 (473)
|.+.-+++.-.++.|-..-...++...++.|..|.|++.....+.+..
T Consensus 271 ~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~ 318 (509)
T PRK09302 271 FRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIR 318 (509)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHH
Confidence 345667777788999999999999999999999999999876655543
No 385
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=39.35 E-value=18 Score=36.52 Aligned_cols=62 Identities=16% Similarity=0.159 Sum_probs=41.7
Q ss_pred hhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHH
Q 042753 364 NSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKAR 434 (473)
Q Consensus 364 ~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~ 434 (473)
-++.||+++|.|++..= +-.-+..++ ..--|...+ ...-....+++++.++..|+ +++.++.
T Consensus 380 iv~IEAMa~glPvvAt~----~GGP~EiV~-~~~tG~l~d---p~~e~~~~~a~~~~kl~~~p-~l~~~~~ 441 (495)
T KOG0853|consen 380 IVPIEAMACGLPVVATN----NGGPAEIVV-HGVTGLLID---PGQEAVAELADALLKLRRDP-ELWARMG 441 (495)
T ss_pred ceeHHHHhcCCCEEEec----CCCceEEEE-cCCcceeeC---CchHHHHHHHHHHHHHhcCH-HHHHHHH
Confidence 37899999999999873 333333343 313477777 43223337999999999998 7765544
No 386
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=39.31 E-value=37 Score=29.26 Aligned_cols=42 Identities=14% Similarity=0.232 Sum_probs=30.4
Q ss_pred EEEEEcCCCCCChHH-HHHHHHHHHh-CCCeEEEEeCCCChhhhh
Q 042753 7 HILVYPFPTSGHIIP-LLDLTNRLLT-LGLNVTVLITQNNLPLLD 49 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p-~l~La~~L~~-rGh~Vt~~~~~~~~~~i~ 49 (473)
||++.-.+ .||... ...+.++|.+ +||+|.++.++...+.++
T Consensus 1 ~i~~gitG-sg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 1 RIAWGITG-SGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred CEEEEEEc-cHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 34444443 378766 8899999985 599999999987665444
No 387
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=39.28 E-value=56 Score=28.96 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=25.0
Q ss_pred CCcEEEe-CCCcc-hHHHHHHHhCCCcEEEecchH
Q 042753 104 PPVAILS-DFFLG-WTQGLAAELGLPRVVFSPSGA 136 (473)
Q Consensus 104 ~pD~VV~-D~~~~-~~~~~A~~~giP~v~~~~~~~ 136 (473)
.||+||+ |+..- -+..=|.++|||+|.++-+.+
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~ 148 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDN 148 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCC
Confidence 7888875 54433 577889999999999976643
No 388
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=39.10 E-value=64 Score=32.24 Aligned_cols=87 Identities=15% Similarity=0.009 Sum_probs=48.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTL-GLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
+|||++-.++..| +|+++|.+. |+.+.++ .+.+....... . ...++.
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~-~~~n~g~~~~~-------~--~~~~~~----------------- 48 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYV-APGNAGTALLA-------E--NVVIDV----------------- 48 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEE-eCCCHHHHhhc-------c--ccCCCC-----------------
Confidence 5899998887766 599999886 5444444 44332111110 0 111110
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc---hHHHHHHHhCCCcEE
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSDFFLG---WTQGLAAELGLPRVV 130 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~---~~~~~A~~~giP~v~ 130 (473)
.-.+.+.++.++. ++|+||...-.. ......+++|+|++.
T Consensus 49 ----~d~~~l~~~~~~~--~id~vi~~~e~~l~~~~~~~l~~~gi~~~g 91 (420)
T PRK00885 49 ----TDIEALVAFAKEE--GIDLTVVGPEAPLVAGIVDAFRAAGLPIFG 91 (420)
T ss_pred ----CCHHHHHHHHHHh--CCCEEEECCchHHHHHHHHHHHHCCCcEEC
Confidence 1123455567777 899999654332 223456678999654
No 389
>PRK06756 flavodoxin; Provisional
Probab=38.85 E-value=1.9e+02 Score=23.78 Aligned_cols=38 Identities=8% Similarity=0.044 Sum_probs=29.6
Q ss_pred ccEEEEEcCCCCCChHHH-HHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPL-LDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~-l~La~~L~~rGh~Vt~~~~~ 42 (473)
|+||+++=...+||..-+ ..|++.|.++|++|.+....
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~ 39 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIM 39 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehh
Confidence 678887777788998875 55688888899999877554
No 390
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=38.81 E-value=79 Score=29.13 Aligned_cols=107 Identities=15% Similarity=0.023 Sum_probs=65.6
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCC----CCCCCCChhh
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQP----KWPAGSPATR 78 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~----~~~~~~~~~~ 78 (473)
|...-+++.-.|+.|...-.+.++...+++|..|.|++.......+.....+ .+..+..+-.. ..+.......
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~---~g~d~~~~~~~g~l~i~d~~~~~~~ 97 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARS---FGWDLEVYIEKGKLAILDAFLSEKG 97 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHH---cCCCHHHHhhcCCEEEEEccccccc
Confidence 4566678888999999999999999999999999999998776665544221 01111100000 0000000000
Q ss_pred H----HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc
Q 042753 79 L----LKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG 115 (473)
Q Consensus 79 ~----~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~ 115 (473)
. ........ .+...+.++.+.. +++.+|.|....
T Consensus 98 ~~~~~~~~~~~~~-~l~~~I~~~~~~~--~~~~~ViDsi~~ 135 (260)
T COG0467 98 LVSIVVGDPLDLE-ELLDRIREIVEKE--GADRVVIDSITE 135 (260)
T ss_pred cccccccCCccHH-HHHHHHHHHHHHh--CCCEEEEeCCch
Confidence 0 00001122 4567788888888 899999998763
No 391
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=38.77 E-value=79 Score=25.91 Aligned_cols=44 Identities=16% Similarity=0.081 Sum_probs=37.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLL 48 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 48 (473)
+.+|++-+..+-+|-.--.-++..|.+.|++|+.+......+.+
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~ 44 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEF 44 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 35889999999999999999999999999999999987654443
No 392
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=38.68 E-value=42 Score=31.08 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=25.7
Q ss_pred CcEEEEEeCCcccCC-HHHHHHHHHHHHh--CCCcEEEEEeCC
Q 042753 273 ESVVYVCFGSRYVLT-AKQIHELAAALEK--TDVDFVYCVREP 312 (473)
Q Consensus 273 ~~~V~vs~Gs~~~~~-~~~~~~~~~al~~--~~~~~i~~~~~~ 312 (473)
|.+++|||||..... ..-+..+.+.+++ .+..|.|++.++
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 358999999987644 4467777777766 578999998764
No 393
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=38.63 E-value=3e+02 Score=25.69 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHhCCCcEEEecc
Q 042753 92 PALLDWFKSHPSPPVAILSDFFLG--WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 92 ~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~giP~v~~~~~ 134 (473)
..+.+.+++. +..+|+++.... .+-.+|+..|+|.+.+.+.
T Consensus 210 ~~l~~~ik~~--~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~l 252 (282)
T cd01017 210 AELVEFVKKS--DVKYIFFEENASSKIAETLAKETGAKLLVLNPL 252 (282)
T ss_pred HHHHHHHHHc--CCCEEEEeCCCChHHHHHHHHHcCCcEEEeccc
Confidence 4556677888 899999998876 3458999999998876544
No 394
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=38.48 E-value=45 Score=33.54 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=28.0
Q ss_pred HHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEe
Q 042753 93 ALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFS 132 (473)
Q Consensus 93 ~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~ 132 (473)
.+.+++++. +||++|.+.. ...+|+++|+|++.++
T Consensus 361 e~~~~i~~~--~pdliig~~~---~~~~a~~~gip~~~~~ 395 (430)
T cd01981 361 EVGDMIART--EPELIFGTQM---ERHIGKRLDIPCAVIS 395 (430)
T ss_pred HHHHHHHhh--CCCEEEecch---hhHHHHHcCCCEEEEe
Confidence 456677777 8999999964 5567899999998863
No 395
>PRK05114 hypothetical protein; Provisional
Probab=38.46 E-value=1.2e+02 Score=20.54 Aligned_cols=38 Identities=11% Similarity=0.187 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhccCCC
Q 042753 428 RERLKARELSGAALSAVVKGGSSDRDLNDFIKRINELKSGKN 469 (473)
Q Consensus 428 ~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~ 469 (473)
.-.++++++.+.+ ..|=||-.+|..+.+.|.+.-+++.
T Consensus 12 eQQ~AVErIq~LM----aqGmSsgEAI~~VA~eiRe~~~~~~ 49 (59)
T PRK05114 12 QQQKAVERIQELM----AQGMSSGEAIALVAEELRANHQGER 49 (59)
T ss_pred HHHHHHHHHHHHH----HccccHHHHHHHHHHHHHHHHhccc
Confidence 4556666666666 5788888899998888887755443
No 396
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=38.39 E-value=3.3e+02 Score=25.25 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=27.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
++||+++.+++...-. .++++|.+.|+++.++...
T Consensus 3 ~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~ 37 (261)
T PRK01175 3 SIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHIN 37 (261)
T ss_pred CCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeec
Confidence 4689999988886443 5578888899999988764
No 397
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=38.13 E-value=66 Score=26.64 Aligned_cols=43 Identities=19% Similarity=0.094 Sum_probs=37.1
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPL 47 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 47 (473)
.+||++.+.+.-||=.-..-+++.|...|.+|.....-...+.
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e 54 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEE 54 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHH
Confidence 5789999999889999999999999999999999887655443
No 398
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=38.13 E-value=1.5e+02 Score=30.65 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=27.7
Q ss_pred HHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecc
Q 042753 96 DWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~ 134 (473)
+-+++. ++++||.|.. +..+|+++|++.|.+.+.
T Consensus 139 ~~l~~~--G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 139 NDLRAR--GIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHC--CCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 334445 8999999975 779999999999999775
No 399
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=38.06 E-value=97 Score=29.57 Aligned_cols=136 Identities=7% Similarity=-0.085 Sum_probs=74.4
Q ss_pred CCcEEEEEeC-Ccc--cCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeec--CccH-
Q 042753 272 DESVVYVCFG-SRY--VLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRG--WSQQ- 345 (473)
Q Consensus 272 ~~~~V~vs~G-s~~--~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~--~~pq- 345 (473)
.++.|.+.-| |.. .++.+.+.++++.+.+.+.++++..+... + ...-+.+.+. .+++.+.+ .+.+
T Consensus 177 ~~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~----e---~~~~~~i~~~--~~~~~l~g~~sL~el 247 (322)
T PRK10964 177 AGPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEH----E---EQRAKRLAEG--FPYVEVLPKLSLEQV 247 (322)
T ss_pred CCCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHH----H---HHHHHHHHcc--CCcceecCCCCHHHH
Confidence 3455544444 432 37888999999999777777766545432 0 0011122211 11222222 2333
Q ss_pred HHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcc-eEEec--cCCCCCCCHHHHHHHHHHH
Q 042753 346 VAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGV-GIRVG--EGTRNIPESDELARLLAQS 422 (473)
Q Consensus 346 ~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~-G~~l~--~~~~~~~~~~~l~~~i~~~ 422 (473)
..++.++++ +|+.- .|.++=|.+.|+|+|++=-..|...+.- . |- ..... .+....++.+++.++++++
T Consensus 248 aali~~a~l--~I~nD-SGp~HlA~A~g~p~valfGpt~p~~~~p----~-~~~~~~~~~~~~cm~~I~~e~V~~~~~~~ 319 (322)
T PRK10964 248 ARVLAGAKA--VVSVD-TGLSHLTAALDRPNITLYGPTDPGLIGG----Y-GKNQHACRSPGKSMADLSAETVFQKLETL 319 (322)
T ss_pred HHHHHhCCE--EEecC-CcHHHHHHHhCCCEEEEECCCCcccccC----C-CCCceeecCCCcccccCCHHHHHHHHHHH
Confidence 458899996 77765 5778889999999988621122111110 0 10 00011 1114578899999888887
Q ss_pred hC
Q 042753 423 VD 424 (473)
Q Consensus 423 l~ 424 (473)
|+
T Consensus 320 l~ 321 (322)
T PRK10964 320 IS 321 (322)
T ss_pred hh
Confidence 64
No 400
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=38.06 E-value=66 Score=28.87 Aligned_cols=39 Identities=13% Similarity=-0.059 Sum_probs=26.8
Q ss_pred ccEEEEEcCC----CCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFP----TSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~----~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|+||+++..+ ......=+..--..|.+.|++|+++++..
T Consensus 1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CCEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 5788766531 11234445666788999999999999854
No 401
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=37.88 E-value=61 Score=28.54 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=25.0
Q ss_pred CCcEEEe-CCCcc-hHHHHHHHhCCCcEEEecchH
Q 042753 104 PPVAILS-DFFLG-WTQGLAAELGLPRVVFSPSGA 136 (473)
Q Consensus 104 ~pD~VV~-D~~~~-~~~~~A~~~giP~v~~~~~~~ 136 (473)
.||+||+ |+..- -+..=|.++|||+|.++-+.+
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~ 142 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTDN 142 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCC
Confidence 7888875 55433 577889999999999976643
No 402
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=37.61 E-value=49 Score=28.54 Aligned_cols=38 Identities=11% Similarity=-0.030 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCCCCcEEEeCCCcch--HHHHHHHhCCCcEEEe
Q 042753 92 PALLDWFKSHPSPPVAILSDFFLGW--TQGLAAELGLPRVVFS 132 (473)
Q Consensus 92 ~~l~~~l~~~~~~pD~VV~D~~~~~--~~~~A~~~giP~v~~~ 132 (473)
..+.++++ . +||+||....... ....-++.|||++.+.
T Consensus 60 ~n~E~ll~-l--~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 60 LNVELIVA-L--KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCHHHHhc-c--CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 34455554 5 8999998654332 3344578899998863
No 403
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=37.60 E-value=2.8e+02 Score=24.25 Aligned_cols=45 Identities=18% Similarity=0.131 Sum_probs=36.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC-Chhhhhh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN-NLPLLDS 50 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~-~~~~i~~ 50 (473)
.=+.++-.|+.|-..-.+.++....+.|..|.|++++. ..+++.+
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~ 58 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQ 58 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHH
Confidence 33467778899999999999999999999999999986 4444444
No 404
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=37.57 E-value=2.7e+02 Score=23.98 Aligned_cols=98 Identities=12% Similarity=-0.079 Sum_probs=48.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC-----hhhhhhhccCCCCCCeeEEEcCCCCCCCCCCh-hhH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN-----LPLLDSLNANHPSTSLQSLVLPQPKWPAGSPA-TRL 79 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~-----~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~-~~~ 79 (473)
..|.+++..+.|-....+.+|-+-+-+|.+|.++-.-.. +..+-+.. +++.+..... ++... ..-
T Consensus 4 G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l-----~~~~~~~~g~----~f~~~~~~~ 74 (172)
T PF02572_consen 4 GLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKL-----PNVEIERFGK----GFVWRMNEE 74 (172)
T ss_dssp --EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGG-----T--EEEE--T----T----GGGH
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhC-----CeEEEEEcCC----cccccCCCc
Confidence 457789999999999888887777778889999876432 11111221 3466765542 22111 111
Q ss_pred HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc
Q 042753 80 LKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG 115 (473)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~ 115 (473)
..-..... ..-....+.+.+. .+|+||.|.+..
T Consensus 75 ~~~~~~~~-~~~~~a~~~i~~~--~~dlvILDEi~~ 107 (172)
T PF02572_consen 75 EEDRAAAR-EGLEEAKEAISSG--EYDLVILDEINY 107 (172)
T ss_dssp HHHHHHHH-HHHHHHHHHTT-T--T-SEEEEETHHH
T ss_pred HHHHHHHH-HHHHHHHHHHhCC--CCCEEEEcchHH
Confidence 11122222 2234455666666 899999997633
No 405
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.55 E-value=52 Score=30.43 Aligned_cols=51 Identities=16% Similarity=0.144 Sum_probs=37.0
Q ss_pred ceeeccCchhHHHHHh-hCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc
Q 042753 356 AFLTHCGWNSVLEGVS-AGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 356 ~~ItHgG~~s~~eal~-~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~ 426 (473)
++|+=||=||++.|+. .++|++.+- .|...= -...+.+++.+++++++++.
T Consensus 44 ~vi~iGGDGT~L~a~~~~~~Pilgin-----------------~G~lGf---l~~~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 44 LIIVVGGDGTVLKAAKKVGTPLVGFK-----------------AGRLGF---LSSYTLEEIDRFLEDLKNWN 95 (256)
T ss_pred EEEEECCcHHHHHHHHHcCCCEEEEe-----------------CCCCcc---ccccCHHHHHHHHHHHHcCC
Confidence 4999999999999977 477777662 232111 23567888999999988864
No 406
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=37.54 E-value=47 Score=34.35 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=28.0
Q ss_pred HHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEe
Q 042753 93 ALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFS 132 (473)
Q Consensus 93 ~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~ 132 (473)
++.+.+++. +||+||.+.. ...+|+++|||++.++
T Consensus 353 el~~~i~~~--~PdliiG~~~---er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAEA--APELVLGTQM---ERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHhc--CCCEEEEcch---HHHHHHHcCCCEEEec
Confidence 556677777 8999998853 6778999999998764
No 407
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=37.51 E-value=90 Score=27.84 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCC--ChHHHHHHHHHHHh
Q 042753 6 AHILVYPFPTSG--HIIPLLDLTNRLLT 31 (473)
Q Consensus 6 ~~Il~~~~~~~G--H~~p~l~La~~L~~ 31 (473)
|+||+.-|.-+| -.||...++++|..
T Consensus 1 M~vLiTGF~PF~g~~~NPS~~~v~~L~~ 28 (209)
T PRK13193 1 MTVLLFGFEPFLEYKENPSQLIVEALNG 28 (209)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHHhhc
Confidence 457766655443 48999999999966
No 408
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=37.37 E-value=61 Score=28.58 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=29.8
Q ss_pred ccEEEEEcCCCCCChHHHHH-HHHHHHh-CCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLD-LTNRLLT-LGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~-La~~L~~-rGh~Vt~~~~~ 42 (473)
|+||+++-+..+||..-+.. +++.+.+ .|++|.++.-+
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 57898888777899998766 5666666 89999888764
No 409
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=36.95 E-value=2.7e+02 Score=29.87 Aligned_cols=41 Identities=10% Similarity=0.079 Sum_probs=25.7
Q ss_pred HHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecch
Q 042753 93 ALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPSG 135 (473)
Q Consensus 93 ~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~~ 135 (473)
.+.+.+++. .||++|+-.+.. ....+-......++-++++.
T Consensus 66 ~~~~~l~~~--~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~sl 107 (660)
T PRK08125 66 LWVERIREL--APDVIFSFYYRNLLSDEILQLAPAGAFNLHGSL 107 (660)
T ss_pred HHHHHHHhc--CCCEEEEccccccCCHHHHhhcCCCEEEEeCCc
Confidence 344567778 999999765533 33344444555667777764
No 410
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=36.95 E-value=3.6e+02 Score=26.49 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 2 LPAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 2 ~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
+|..++|+++-.+ . ....++.++.+.|++|.++.....
T Consensus 9 ~~~~~~ilIiG~g---~--~~~~~~~a~~~~G~~v~~~~~~~~ 46 (395)
T PRK09288 9 SPSATRVMLLGSG---E--LGKEVAIEAQRLGVEVIAVDRYAN 46 (395)
T ss_pred CCCCCEEEEECCC---H--HHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4445688887432 2 344567778889999998887643
No 411
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=36.80 E-value=1.6e+02 Score=29.32 Aligned_cols=90 Identities=14% Similarity=0.016 Sum_probs=52.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRV 85 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~ 85 (473)
+||+++-.+.. -..|++++.+-|+.+++++.+.+....... ...+.....
T Consensus 1 ~kiliiG~G~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~------------------ 50 (423)
T TIGR00877 1 MKVLVIGNGGR-----EHALAWKLAQSPLVKYVYVAPGNAGTARLA-------KNKNVAISI------------------ 50 (423)
T ss_pred CEEEEECCChH-----HHHHHHHHHhCCCccEEEEECCCHHHhhhc-------ccccccCCC------------------
Confidence 47777766665 446788888888888888776553321111 011111110
Q ss_pred HHHHhhHHHHHHHhcCCCCCcEEEeCCCcc---hHHHHHHHhCCCcEE
Q 042753 86 LRELHYPALLDWFKSHPSPPVAILSDFFLG---WTQGLAAELGLPRVV 130 (473)
Q Consensus 86 ~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~---~~~~~A~~~giP~v~ 130 (473)
.-.+.+.++.++. ++|+||...-.. .....++++|+|++.
T Consensus 51 ---~d~~~l~~~~~~~--~id~vi~~~e~~l~~~~~~~l~~~gi~~~g 93 (423)
T TIGR00877 51 ---TDIEALVEFAKKK--KIDLAVIGPEAPLVLGLVDALEEAGIPVFG 93 (423)
T ss_pred ---CCHHHHHHHHHHh--CCCEEEECCchHHHHHHHHHHHHCCCeEEC
Confidence 0123455667777 899999765332 234566778998654
No 412
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=36.55 E-value=3.5e+02 Score=25.43 Aligned_cols=108 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred CCCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC--CCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhH
Q 042753 2 LPAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLIT--QNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRL 79 (473)
Q Consensus 2 ~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~--~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 79 (473)
....+||+++..+ .|+-.-.+--+.+--+.+++|.++.+ ++.....++. ++.+..++... ....
T Consensus 86 ~~~~~ri~vl~Sg-~g~nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~-------gIp~~~~~~~~-~~~~----- 151 (286)
T PRK13011 86 PAARPKVLIMVSK-FDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWH-------GIPFHHFPITP-DTKP----- 151 (286)
T ss_pred cccCceEEEEEcC-CcccHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHh-------CCCEEEeCCCc-Cchh-----
Q ss_pred HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecc
Q 042753 80 LKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~ 134 (473)
.....+.+++++. ++|++|+-.+.. ....+-+.+.-..+-++++
T Consensus 152 ---------~~~~~~~~~l~~~--~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK13011 152 ---------QQEAQVLDVVEES--GAELVVLARYMQVLSPELCRKLAGRAINIHHS 196 (286)
T ss_pred ---------hhHHHHHHHHHHh--CcCEEEEeChhhhCCHHHHhhccCCeEEeccc
No 413
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=36.33 E-value=1.6e+02 Score=26.98 Aligned_cols=84 Identities=17% Similarity=0.210 Sum_probs=49.4
Q ss_pred HhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEE
Q 042753 30 LTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPALLDWFKSHPSPPVAIL 109 (473)
Q Consensus 30 ~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV 109 (473)
........+..++.+....+.+ |+.....-... .+..++. .....+.+.+++. +..+|+
T Consensus 146 ~~~~~~~~v~~h~~~~Y~~~~~-------gl~~~~~~~~~-~~~~ps~-----------~~l~~l~~~ik~~--~v~~i~ 204 (256)
T PF01297_consen 146 AKLPGRPVVVYHDAFQYFAKRY-------GLKVIGVIEIS-PGEEPSP-----------KDLAELIKLIKEN--KVKCIF 204 (256)
T ss_dssp TTSSGGEEEEEESTTHHHHHHT-------T-EEEEEESSS-SSSSS-H-----------HHHHHHHHHHHHT--T-SEEE
T ss_pred hcccCCeEEEEChHHHHHHHhc-------CCceeeeeccc-cccCCCH-----------HHHHHHHHHhhhc--CCcEEE
Confidence 3334456677777777666666 56655433111 1222221 2234566778888 999999
Q ss_pred eCCCcc--hHHHHHHHhCCCcEEEecc
Q 042753 110 SDFFLG--WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 110 ~D~~~~--~~~~~A~~~giP~v~~~~~ 134 (473)
++.... .+-.+|++.|+|.+.+.+.
T Consensus 205 ~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 205 TEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp EETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred ecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 998766 3568899999999876444
No 414
>PRK08322 acetolactate synthase; Reviewed
Probab=36.26 E-value=1.2e+02 Score=31.62 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=21.7
Q ss_pred ccceeeccCc------hhHHHHHhhCCeEecCc
Q 042753 354 VGAFLTHCGW------NSVLEGVSAGVVMLTWP 380 (473)
Q Consensus 354 v~~~ItHgG~------~s~~eal~~GvP~l~~P 380 (473)
.+++++|.|- +.+.+|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 4458888774 47899999999999884
No 415
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=36.26 E-value=2.9e+02 Score=30.12 Aligned_cols=40 Identities=8% Similarity=0.023 Sum_probs=32.1
Q ss_pred ccEEEEEc--CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 5 GAHILVYP--FPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 5 ~~~Il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
..||+.++ -++-|-..-...||..|++.|++|.++-.+..
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 45665444 67789999999999999999999999866544
No 416
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=36.23 E-value=48 Score=29.35 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=17.4
Q ss_pred cEEEEEcCCCCC--ChHHHHHHHHHHHh
Q 042753 6 AHILVYPFPTSG--HIIPLLDLTNRLLT 31 (473)
Q Consensus 6 ~~Il~~~~~~~G--H~~p~l~La~~L~~ 31 (473)
||||+.-|+-+| -.||...++++|.+
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~ 28 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPG 28 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTT
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCC
Confidence 578766654443 47999999999976
No 417
>PRK08462 biotin carboxylase; Validated
Probab=36.13 E-value=2.7e+02 Score=28.02 Aligned_cols=100 Identities=11% Similarity=0.052 Sum_probs=57.7
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHH
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKF 82 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 82 (473)
..|+|||+.--+.. -+++++++.+.|++|+.+.+........-.. .=.+..++... . .
T Consensus 2 ~~~k~ili~~~g~~-----~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~------ad~~~~~~~~~----~-~------ 59 (445)
T PRK08462 2 KEIKRILIANRGEI-----ALRAIRTIQEMGKEAIAIYSTADKDALYLKY------ADAKICIGGAK----S-S------ 59 (445)
T ss_pred CCCCEEEEECCcHH-----HHHHHHHHHHcCCCEEEEechhhcCCchhhh------CCEEEEeCCCc----h-h------
Confidence 45889998765432 5688888888899988887765432111000 01122222100 0 0
Q ss_pred HHHHHHHh-hHHHHHHHhcCCCCCcEEEeCCCcc----hHHHHHHHhCCCcEE
Q 042753 83 MRVLRELH-YPALLDWFKSHPSPPVAILSDFFLG----WTQGLAAELGLPRVV 130 (473)
Q Consensus 83 ~~~~~~~~-~~~l~~~l~~~~~~pD~VV~D~~~~----~~~~~A~~~giP~v~ 130 (473)
.... .+.+.++.++. ++|+|+...-.. ....+++++|+|++.
T Consensus 60 ----~~y~~~~~l~~~~~~~--~~D~i~pg~g~lse~~~~a~~~e~~Gi~~~g 106 (445)
T PRK08462 60 ----ESYLNIPAIISAAEIF--EADAIFPGYGFLSENQNFVEICSHHNIKFIG 106 (445)
T ss_pred ----cccCCHHHHHHHHHHc--CCCEEEECCCccccCHHHHHHHHHCCCeEEC
Confidence 0011 25666777778 999999664321 223578899999765
No 418
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=36.04 E-value=2.7e+02 Score=25.13 Aligned_cols=107 Identities=13% Similarity=0.133 Sum_probs=63.5
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHH
Q 042753 9 LVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRE 88 (473)
Q Consensus 9 l~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (473)
+++-.|+.|-..=...|++.|.-.|++..++...+.+....... ....| +. +....-..+...+..
T Consensus 16 vmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~-----~~~~f--f~-------p~n~~~~~~R~~~a~ 81 (222)
T PF01591_consen 16 VMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAP-----QDAEF--FD-------PDNEEAKKLREQIAK 81 (222)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS------S-GGG--GS-------TT-HHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccc-----ccccc--CC-------CCChHHHHHHHHHHH
Confidence 46669999999999999999999999999999876655444320 01111 01 111222233333333
Q ss_pred HhhHHHHHHHhcCCCCCcEEEeCCCcc------hHHHHHHHhCCCcEEE
Q 042753 89 LHYPALLDWFKSHPSPPVAILSDFFLG------WTQGLAAELGLPRVVF 131 (473)
Q Consensus 89 ~~~~~l~~~l~~~~~~pD~VV~D~~~~------~~~~~A~~~giP~v~~ 131 (473)
...+.+.++|.+. .-++-|.|.... +........|+.++.+
T Consensus 82 ~~l~dl~~~l~~~--~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFI 128 (222)
T PF01591_consen 82 EALEDLIEWLQEE--GGQVAIFDATNSTRERRKMLVERFKEHGIKVLFI 128 (222)
T ss_dssp HHHHHHHHHHHTS----SEEEEES---SHHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHhcC--CCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 5556777788866 669999998855 3356667778776655
No 419
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=35.82 E-value=97 Score=26.40 Aligned_cols=50 Identities=20% Similarity=0.215 Sum_probs=35.2
Q ss_pred HHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcch---------------HHHHHHHhCCCcEEEecchH
Q 042753 84 RVLRELHYPALLDWFKSHPSPPVAILSDFFLGW---------------TQGLAAELGLPRVVFSPSGA 136 (473)
Q Consensus 84 ~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~---------------~~~~A~~~giP~v~~~~~~~ 136 (473)
..+. .+.+.+.+++++. +||.++.+..++. ...++.+.|||+.-+.|...
T Consensus 44 ~Rl~-~I~~~l~~~i~~~--~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~~V 108 (164)
T PRK00039 44 ERLK-QIYDGLSELIDEY--QPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPLQV 108 (164)
T ss_pred HHHH-HHHHHHHHHHHHh--CCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHh
Confidence 3344 5567889999999 9999987766442 12466777999888766543
No 420
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=35.71 E-value=47 Score=34.25 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=28.2
Q ss_pred HHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEe
Q 042753 93 ALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFS 132 (473)
Q Consensus 93 ~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~ 132 (473)
.+.+.+++. +||+||.+. ....+|+++|||++.++
T Consensus 355 ei~~~i~~~--~pdliiG~~---~er~~a~~lgip~~~i~ 389 (511)
T TIGR01278 355 EVADAIAAL--EPELVLGTQ---MERHSAKRLDIPCGVIS 389 (511)
T ss_pred HHHHHHHhc--CCCEEEECh---HHHHHHHHcCCCEEEec
Confidence 556667777 899999996 37778999999998764
No 421
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=35.63 E-value=2.3e+02 Score=28.76 Aligned_cols=85 Identities=19% Similarity=0.278 Sum_probs=51.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
.+|+.++.. -.-...+++.|.+.|-+|..+.+....+..+.. +..... +. .+
T Consensus 311 gkrvai~~~-----~~~~~~la~~L~elG~~v~~~~~~~~~~~~~~~------~~~~i~-~~--------------D~-- 362 (455)
T PRK14476 311 GKRVAIAAE-----PDLLLALGSFLAEMGAEIVAAVTTTKSPALEDL------PAEEVL-IG--------------DL-- 362 (455)
T ss_pred CCEEEEEeC-----HHHHHHHHHHHHHCCCEEEEEEeCCCcHHHHhC------CcCcEE-eC--------------CH--
Confidence 466666542 246778899999999999888876533222211 000000 00 00
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEE
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~ 131 (473)
..+.+.++ ++|++|.+.. ...+|+++|||++.+
T Consensus 363 -------~~le~~~~----~~dliig~s~---~~~~a~~~gip~~~~ 395 (455)
T PRK14476 363 -------EDLEELAE----GADLLITNSH---GRQAAERLGIPLLRV 395 (455)
T ss_pred -------HHHHHhcc----CCCEEEECch---hHHHHHHcCCCEEEe
Confidence 12333333 6899999964 678999999999874
No 422
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=35.55 E-value=43 Score=33.92 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=38.4
Q ss_pred CCeeEEEcCCCCCCCCCChhhH--HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHhCCCcEEEec
Q 042753 58 TSLQSLVLPQPKWPAGSPATRL--LKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG--WTQGLAAELGLPRVVFSP 133 (473)
Q Consensus 58 ~~~~f~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~giP~v~~~~ 133 (473)
.+..+..+|+...+++-.. .+ ..+|-.+++.......+++++....||+|+.....- .+.++++++|||...+..
T Consensus 354 ~~a~IlRvPF~~~~gi~~k-wisrf~lWPyLe~fa~d~~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaH 432 (550)
T PF00862_consen 354 ENARILRVPFGPEKGILRK-WISRFDLWPYLEEFADDAEREILAELQGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAH 432 (550)
T ss_dssp SSEEEEEE-ESESTEEE-S----GGG-GGGHHHHHHHHHHHHHHHHTS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-S
T ss_pred CCcEEEEecCCCCcchhhh-ccchhhchhhHHHHHHHHHHHHHHHhCCCCcEEEeccCcchHHHHHHHhhcCCceehhhh
Confidence 4677778887654332111 00 112222332233334444454334899999775533 567999999999888654
Q ss_pred ch
Q 042753 134 SG 135 (473)
Q Consensus 134 ~~ 135 (473)
+.
T Consensus 433 sL 434 (550)
T PF00862_consen 433 SL 434 (550)
T ss_dssp S-
T ss_pred cc
Confidence 43
No 423
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.39 E-value=2.3e+02 Score=28.49 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
++|+++ +.|. .- +++|+.|+++|++|+++....
T Consensus 6 k~v~ii---G~g~-~G-~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVV---GAGV-SG-LALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEE---CCCH-HH-HHHHHHHHHCCCEEEEEeCCc
Confidence 566555 3344 22 499999999999999887653
No 424
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=35.31 E-value=1.8e+02 Score=28.25 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.7
Q ss_pred cCccceeeccCchh---HHHHHhhCCeEecC
Q 042753 352 KAVGAFLTHCGWNS---VLEGVSAGVVMLTW 379 (473)
Q Consensus 352 ~~v~~~ItHgG~~s---~~eal~~GvP~l~~ 379 (473)
|++ +|++||+-| ...|...|+|+++.
T Consensus 92 Pdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 92 PDV--IFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred CCE--EEecCchhhHHHHHHHHHcCCCEEEE
Confidence 665 999999997 89999999999774
No 425
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=35.29 E-value=42 Score=33.66 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=28.8
Q ss_pred HHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEe
Q 042753 93 ALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFS 132 (473)
Q Consensus 93 ~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~ 132 (473)
++.+++++. +||++|.... ...+|+++|||++.+.
T Consensus 360 e~~~~i~~~--~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 360 ELEEFVKRL--KPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHh--CCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 456777888 9999999875 6778999999998764
No 426
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=35.27 E-value=1.4e+02 Score=27.04 Aligned_cols=99 Identities=23% Similarity=0.226 Sum_probs=52.0
Q ss_pred cEEEEEcCCCC-CChHH---HHHHHHHHHhCCCeEEEEeCCCC--hhhhhhhccCCCCCCee--EEEcCCCCCCCCCChh
Q 042753 6 AHILVYPFPTS-GHIIP---LLDLTNRLLTLGLNVTVLITQNN--LPLLDSLNANHPSTSLQ--SLVLPQPKWPAGSPAT 77 (473)
Q Consensus 6 ~~Il~~~~~~~-GH~~p---~l~La~~L~~rGh~Vt~~~~~~~--~~~i~~~~~~~~~~~~~--f~~l~~~~~~~~~~~~ 77 (473)
..|++.+..+. .-.-| +..|++.|.++|.+|.+++.+.. .+.+..... +.. ...+.. ..
T Consensus 106 ~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~--------~~ 172 (247)
T PF01075_consen 106 PYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAA-----GLQNPVINLAG--------KT 172 (247)
T ss_dssp SEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHT-----THTTTTEEETT--------TS
T ss_pred CeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHH-----hcccceEeecC--------CC
Confidence 45666665544 22222 68999999999988888888766 222222211 111 221110 11
Q ss_pred hHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecch
Q 042753 78 RLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSG 135 (473)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~ 135 (473)
. ..++..+++ .-|++|+.- .+...+|..+|+|+|.++...
T Consensus 173 ~------------l~e~~ali~----~a~~~I~~D--tg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 173 S------------LRELAALIS----RADLVIGND--TGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp -------------HHHHHHHHH----TSSEEEEES--SHHHHHHHHTT--EEEEESSS
T ss_pred C------------HHHHHHHHh----cCCEEEecC--ChHHHHHHHHhCCEEEEecCC
Confidence 1 123444555 459999653 457799999999999997553
No 427
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=35.05 E-value=1.9e+02 Score=21.53 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhccCCCcc
Q 042753 414 ELARLLAQSVDGP---RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINELKSGKNLT 471 (473)
Q Consensus 414 ~l~~~i~~~l~~~---~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~ 471 (473)
+....++++.+|. ...|++|.+..+.+. .++.+-...+...+..|.+-....||+
T Consensus 10 ~~~~~L~~I~~D~sVPRNIRr~a~ea~~~L~---~e~~~~~vRaataIs~LdeIsnDPNmP 67 (85)
T PF03685_consen 10 QAIQMLERIINDTSVPRNIRRAAEEAKEILN---NEEESPGVRAATAISILDEISNDPNMP 67 (85)
T ss_dssp HHHHHHHHHHT-TTS-HHHHHHHHHHHHHCT----TTS-HHHHHHHHHHHHHHHCT-TTS-
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHh---CCCcchhHhHHHHHHHHHHhhcCCCCc
Confidence 4455566777776 455555555555554 344455666667777777777777775
No 428
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=35.03 E-value=72 Score=25.80 Aligned_cols=39 Identities=18% Similarity=0.442 Sum_probs=29.1
Q ss_pred CcEEEEEeCCcccCCHHHHHHHHHHHHh--CCCcEEEEEeC
Q 042753 273 ESVVYVCFGSRYVLTAKQIHELAAALEK--TDVDFVYCVRE 311 (473)
Q Consensus 273 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~--~~~~~i~~~~~ 311 (473)
+.++++++||......+.+..+.+.+++ .+..+-|.+..
T Consensus 1 ~aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 1 KAILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 3689999999977555677778888854 35677777764
No 429
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=34.93 E-value=1.2e+02 Score=24.99 Aligned_cols=39 Identities=23% Similarity=0.230 Sum_probs=30.5
Q ss_pred CCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeC
Q 042753 272 DESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVRE 311 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 311 (473)
...+|++++||-.....+.++++++.+. .+.+++++...
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 4579999999997777888888888874 45777776554
No 430
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=34.92 E-value=1.5e+02 Score=26.09 Aligned_cols=121 Identities=15% Similarity=0.104 Sum_probs=73.8
Q ss_pred CCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhc
Q 042753 272 DESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRH 351 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~ 351 (473)
+=|..++.-..+. ...++-..+.+.|.+.+..+|+..+.- .-|...|.+++..+=+= -|
T Consensus 50 gIpt~~~~~k~~~-~r~~~d~~l~~~l~~~~~dlvvLAGyM---------rIL~~~fl~~~~grIlN-----------IH 108 (200)
T COG0299 50 GIPTVVLDRKEFP-SREAFDRALVEALDEYGPDLVVLAGYM---------RILGPEFLSRFEGRILN-----------IH 108 (200)
T ss_pred CCCEEEeccccCC-CHHHHHHHHHHHHHhcCCCEEEEcchH---------HHcCHHHHHHhhcceEe-----------cC
Confidence 4455555444443 234455668888888888888777764 34566776666442111 37
Q ss_pred cCccceeeccCchhHHHHHhhCCeEecCcccc--cchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHH
Q 042753 352 KAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDA--DQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQS 422 (473)
Q Consensus 352 ~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~--DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~ 422 (473)
|++ .=.++|..+..+|+.+|+..-.+-.+. +..+-.-.+. ...+.+. ..-|.++|.+.|.+.
T Consensus 109 PSL--LP~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~---Q~~Vpv~----~~Dt~etl~~RV~~~ 172 (200)
T COG0299 109 PSL--LPAFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIA---QAAVPVL----PGDTAETLEARVLEQ 172 (200)
T ss_pred ccc--ccCCCCchHHHHHHHcCCCccCcEEEEEccCCCCCCeEE---EEeeeec----CCCCHHHHHHHHHHH
Confidence 886 788999999999999999986555432 3333333332 1223332 233777777766653
No 431
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=34.89 E-value=83 Score=24.85 Aligned_cols=41 Identities=17% Similarity=-0.049 Sum_probs=33.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhh
Q 042753 8 ILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLL 48 (473)
Q Consensus 8 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 48 (473)
++....++-.|-....-++..|.++|++|.+.......+.+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~ 42 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEI 42 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHH
Confidence 56777888899999999999999999999999765443333
No 432
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=34.84 E-value=1.6e+02 Score=28.43 Aligned_cols=85 Identities=12% Similarity=0.132 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCChhh--hhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhHHHHHHH
Q 042753 21 PLLDLTNRLLTLGLNVTVLITQNNLPL--LDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPALLDWF 98 (473)
Q Consensus 21 p~l~La~~L~~rGh~Vt~~~~~~~~~~--i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 98 (473)
-+..|++.|.++|++|.+++.+...+. .+...... ..-....+ ... .-..++..++
T Consensus 203 ~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~--~~~~~~~l--------~g~------------~sL~el~ali 260 (352)
T PRK10422 203 KFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGC--QTPPVTAL--------AGK------------TTFPELGALI 260 (352)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhc--CCCccccc--------cCC------------CCHHHHHHHH
Confidence 478899999888999988877643222 22221000 00000000 000 1123445555
Q ss_pred hcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEec
Q 042753 99 KSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSP 133 (473)
Q Consensus 99 ~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~ 133 (473)
+ +-|++|+.- +....+|..+|+|+|.++.
T Consensus 261 ~----~a~l~v~nD--SGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 261 D----HAQLFIGVD--SAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred H----hCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 5 449999764 4567999999999999864
No 433
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=34.77 E-value=1.3e+02 Score=19.73 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhccCC
Q 042753 428 RERLKARELSGAALSAVVKGGSSDRDLNDFIKRINELKSGK 468 (473)
Q Consensus 428 ~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~ 468 (473)
.--++++++.+.+ ..|=|+-.+|..+.+.|.+...++
T Consensus 12 eQQ~AvE~Iq~LM----aqGmSsgEAI~~VA~~iRe~~~~~ 48 (51)
T PF03701_consen 12 EQQQAVERIQELM----AQGMSSGEAIAIVAQEIREEHQGK 48 (51)
T ss_pred HHHHHHHHHHHHH----HhcccHHHHHHHHHHHHHHHHHhc
Confidence 4455666666666 578888889998888888765444
No 434
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=34.61 E-value=2.3e+02 Score=32.43 Aligned_cols=97 Identities=13% Similarity=0.038 Sum_probs=55.7
Q ss_pred CccEEEEEcCCCC--CCh----HHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChh
Q 042753 4 AGAHILVYPFPTS--GHI----IPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPAT 77 (473)
Q Consensus 4 ~~~~Il~~~~~~~--GH~----~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~ 77 (473)
.++||+++-.+.. |.- ..+++++++|.+.||+|.++...+..-..... ....+-|. |
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~npetvs~~~~----~aD~~y~e--p----------- 616 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNPETVSTDYD----TADRLYFE--P----------- 616 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCccccccccc----cCceEEEc--c-----------
Confidence 4678887765432 332 36788999999999999988876421100000 00111111 1
Q ss_pred hHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc---hHHHHHHHhCCCcEE
Q 042753 78 RLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG---WTQGLAAELGLPRVV 130 (473)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~---~~~~~A~~~giP~v~ 130 (473)
...+.+.++++.. ++|.||...-.. ......++.|+|++.
T Consensus 617 -----------~~~e~vl~I~~~e--~~dgVI~~~g~~~~~~la~~le~~Gi~ilG 659 (1068)
T PRK12815 617 -----------LTLEDVLNVAEAE--NIKGVIVQFGGQTAINLAKGLEEAGLTILG 659 (1068)
T ss_pred -----------CCHHHHHHHHhhc--CCCEEEEecCcHHHHHHHHHHHHCCCeEEC
Confidence 1135567778888 999999743222 223344567888655
No 435
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=34.53 E-value=67 Score=29.65 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=33.1
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|.+|.++.=||-|-..-...||..|+++|++|.++=.+.
T Consensus 1 m~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dp 39 (270)
T cd02040 1 MRQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDP 39 (270)
T ss_pred CcEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 567777777788999999999999999999999886543
No 436
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=34.51 E-value=54 Score=33.81 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=28.2
Q ss_pred HHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEe
Q 042753 93 ALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFS 132 (473)
Q Consensus 93 ~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~ 132 (473)
.+.+.+++. +||+||.+.. ...+|+++|||++.++
T Consensus 365 ei~~~I~~~--~pdliiGs~~---er~ia~~lgiP~~~is 399 (513)
T CHL00076 365 EVGDMIARV--EPSAIFGTQM---ERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHhc--CCCEEEECch---hhHHHHHhCCCEEEee
Confidence 456777888 9999999964 6667899999998763
No 437
>PRK14099 glycogen synthase; Provisional
Probab=34.50 E-value=65 Score=32.98 Aligned_cols=112 Identities=15% Similarity=0.175 Sum_probs=59.0
Q ss_pred EeecCccHHH-hh-hccCccceee---ccC-chhHHHHHhhCCeEecCcccc--cchhhHHH---HHHHhcceEEeccCC
Q 042753 338 VIRGWSQQVA-IL-RHKAVGAFLT---HCG-WNSVLEGVSAGVVMLTWPMDA--DQYTNAQL---LVDQLGVGIRVGEGT 406 (473)
Q Consensus 338 ~v~~~~pq~~-lL-~~~~v~~~It---HgG-~~s~~eal~~GvP~l~~P~~~--DQ~~na~r---v~~~~G~G~~l~~~~ 406 (473)
...+|-.+.. ++ +.+++ |+. +=| ..+.+||+++|+|.|+....+ |.-....- .+.. +.|..++
T Consensus 354 ~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l~~--- 427 (485)
T PRK14099 354 VVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQFS--- 427 (485)
T ss_pred EEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEEeC---
Confidence 4456633322 23 34665 664 334 447789999997666654321 21111100 0001 3577776
Q ss_pred CCCCCHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 042753 407 RNIPESDELARLLAQ---SVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 407 ~~~~~~~~l~~~i~~---~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~ 464 (473)
.-+.++|.++|.+ +++|+ ..+++.. +..+ ...-|-++.+++.++...+.
T Consensus 428 --~~d~~~La~ai~~a~~l~~d~-~~~~~l~---~~~~---~~~fSw~~~a~~y~~lY~~l 479 (485)
T PRK14099 428 --PVTADALAAALRKTAALFADP-VAWRRLQ---RNGM---TTDVSWRNPAQHYAALYRSL 479 (485)
T ss_pred --CCCHHHHHHHHHHHHHHhcCH-HHHHHHH---HHhh---hhcCChHHHHHHHHHHHHHH
Confidence 3578999999987 56664 3332222 2221 12345566667766665554
No 438
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=34.41 E-value=77 Score=29.74 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=24.9
Q ss_pred ccCCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 042753 284 YVLTAKQIHELAAALEKTDVDFVYCVREP 312 (473)
Q Consensus 284 ~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 312 (473)
+..+.+..+++.+++.....+.||.+.+.
T Consensus 44 a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG 72 (282)
T cd07025 44 AGTDEERAADLNAAFADPEIKAIWCARGG 72 (282)
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEcCCc
Confidence 44567778889999999999999999886
No 439
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=34.40 E-value=2.6e+02 Score=27.14 Aligned_cols=113 Identities=9% Similarity=0.077 Sum_probs=68.7
Q ss_pred HHHHHHHhC--CCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceee------ccCch
Q 042753 293 ELAAALEKT--DVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLT------HCGWN 364 (473)
Q Consensus 293 ~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~It------HgG~~ 364 (473)
..+.++.+. +..++.++..+. + --..+.++.. + ..|....+++...++.++.+ +-+.-
T Consensus 16 ~h~~al~~~~~~~eLvaV~d~~~--------e-rA~~~A~~~g---i--~~y~~~eell~d~Di~~V~ipt~~P~~~H~e 81 (343)
T TIGR01761 16 FYLAAFAAAPERFELAGILAQGS--------E-RSRALAHRLG---V--PLYCEVEELPDDIDIACVVVRSAIVGGQGSA 81 (343)
T ss_pred HHHHHHHhCCCCcEEEEEEcCCH--------H-HHHHHHHHhC---C--CccCCHHHHhcCCCEEEEEeCCCCCCccHHH
Confidence 356677664 467777776642 1 1123443332 2 24667788888888866664 23356
Q ss_pred hHHHHHhhCCeEec-CcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc
Q 042753 365 SVLEGVSAGVVMLT-WPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 365 s~~eal~~GvP~l~-~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~ 426 (473)
-+.+|+.+|+.++| -|+..++-.-..+++++.|+=+.+. .+.+ -..++++++++.
T Consensus 82 ~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v~-----~f~p--~~~~vr~~i~~~ 137 (343)
T TIGR01761 82 LARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLVN-----TFYP--HLPAVRRFIEYA 137 (343)
T ss_pred HHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEEE-----ecCH--HHHHHHHHHHcc
Confidence 78889999999998 8888766666666665545544444 2332 234556666554
No 440
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=34.36 E-value=94 Score=24.64 Aligned_cols=37 Identities=16% Similarity=0.021 Sum_probs=33.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
||++..-++.|-......+++.|.++|.+|.++..+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888999999999999999999999999888875
No 441
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=34.35 E-value=96 Score=26.42 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=25.1
Q ss_pred CCCcEEEEEeCCcccCCHHHHHHHHHHHHhCC
Q 042753 271 RDESVVYVCFGSRYVLTAKQIHELAAALEKTD 302 (473)
Q Consensus 271 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~ 302 (473)
+.+..||+++||-...+.+.++..++.|.+.+
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~ 36 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAAAP 36 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHhCC
Confidence 34667999999998767778888888887754
No 442
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=34.23 E-value=92 Score=27.36 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=31.6
Q ss_pred CccEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 4 AGAHILVYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 4 ~~~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
.|+.|.+.. -++.|-..-...||..|+++|++|.++=....
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~ 57 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMR 57 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 355555554 56778999999999999999999988765533
No 443
>PRK06851 hypothetical protein; Provisional
Probab=34.18 E-value=1.3e+02 Score=29.36 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=39.1
Q ss_pred CCccEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhc
Q 042753 3 PAGAHILVYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLN 52 (473)
Q Consensus 3 ~~~~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~ 52 (473)
+.+.|+.++. .|+.|...-+..++++|.++|.+|.++-++.....+...+
T Consensus 27 ~~~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~~slDgvi 77 (367)
T PRK06851 27 DGANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDNDSLDGVI 77 (367)
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCCceeeEE
Confidence 3467776666 6899999999999999999999999887765555555543
No 444
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.83 E-value=76 Score=30.06 Aligned_cols=39 Identities=21% Similarity=0.100 Sum_probs=30.5
Q ss_pred CCCCccEEEEEcCCCCCChHH-HHHHHHHHHhCCCeEEEE
Q 042753 1 MLPAGAHILVYPFPTSGHIIP-LLDLTNRLLTLGLNVTVL 39 (473)
Q Consensus 1 ~~~~~~~Il~~~~~~~GH~~p-~l~La~~L~~rGh~Vt~~ 39 (473)
|++.|+||+++.-+..-+... ...|++.|.++|++|.+-
T Consensus 1 ~~~~~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~ 40 (296)
T PRK04539 1 MNSPFHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLD 40 (296)
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 888999999998877755554 446666788999998874
No 445
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.80 E-value=54 Score=30.73 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=36.4
Q ss_pred ceeeccCchhHHHHHh---hCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc
Q 042753 356 AFLTHCGWNSVLEGVS---AGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 356 ~~ItHgG~~s~~eal~---~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~ 426 (473)
++|.-||-||+++++. .++|++.++. |.. .. ...++.+++.++++++++++
T Consensus 60 ~vi~iGGDGTlL~a~~~~~~~~pi~gIn~-----------------G~l-GF--l~~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 60 FIIAIGGDGTILRIEHKTKKDIPILGINM-----------------GTL-GF--LTEVEPEETFFALSRLLEGD 113 (277)
T ss_pred EEEEEeCcHHHHHHHHhcCCCCeEEEEeC-----------------CCC-Cc--cccCCHHHHHHHHHHHHcCC
Confidence 4999999999999984 3568887753 211 11 23456788888998888765
No 446
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=33.79 E-value=38 Score=30.54 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=19.9
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 18 HIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 18 H~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|...|-+.|.+|.++||+|.++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 56778999999999999999999873
No 447
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=33.64 E-value=2.8e+02 Score=28.25 Aligned_cols=98 Identities=11% Similarity=0.055 Sum_probs=56.1
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
++|||+.-. |-+ ...+++.+.+.|++++.+.+........... --.+..++.... ..
T Consensus 2 ~~kvLi~~~---gei--a~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~------aD~~~~i~~~~~---------~~--- 58 (472)
T PRK07178 2 IKKILIANR---GEI--AVRIVRACAEMGIRSVAIYSEADRHALHVKR------ADEAYSIGADPL---------AG--- 58 (472)
T ss_pred CcEEEEECC---cHH--HHHHHHHHHHcCCeEEEEeCCCccCCccHhh------CCEEEEcCCCch---------hh---
Confidence 467877733 333 5688999999999999888875432211110 012222331100 00
Q ss_pred HHHHHh-hHHHHHHHhcCCCCCcEEEeCCC----cchHHHHHHHhCCCcEEE
Q 042753 85 VLRELH-YPALLDWFKSHPSPPVAILSDFF----LGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 85 ~~~~~~-~~~l~~~l~~~~~~pD~VV~D~~----~~~~~~~A~~~giP~v~~ 131 (473)
.. .+.+.++.++. +.|+|+...- .......++++|+|++.-
T Consensus 59 ----y~d~~~i~~~a~~~--~~D~I~pg~g~lse~~~~a~~~e~~Gi~~igp 104 (472)
T PRK07178 59 ----YLNPRRLVNLAVET--GCDALHPGYGFLSENAELAEICAERGIKFIGP 104 (472)
T ss_pred ----hcCHHHHHHHHHHH--CCCEEEeCCCCcccCHHHHHHHHHcCCCccCC
Confidence 11 24566677777 8999996531 112346778889998763
No 448
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=33.58 E-value=41 Score=32.44 Aligned_cols=34 Identities=29% Similarity=0.253 Sum_probs=27.0
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|+||.++-.+..| ..+|..|.++||+|+++....
T Consensus 2 ~mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 2 MARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred CceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHH
Confidence 4788888666655 568899999999999998653
No 449
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=33.48 E-value=92 Score=27.21 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCCCCc--EEEeCCCc-chHHHHHHHhCCCcEEEecchH
Q 042753 92 PALLDWFKSHPSPPV--AILSDFFL-GWTQGLAAELGLPRVVFSPSGA 136 (473)
Q Consensus 92 ~~l~~~l~~~~~~pD--~VV~D~~~-~~~~~~A~~~giP~v~~~~~~~ 136 (473)
..+.+++++. .++ ++|-..+- +++..+|+++|+|.|.+.|+-.
T Consensus 47 ~~l~~~i~~~--~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 47 AQLEQLIEEL--KPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVR 92 (187)
T ss_pred HHHHHHHHhC--CCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 4556777776 443 55544442 2677899999999999877744
No 450
>PRK08939 primosomal protein DnaI; Reviewed
Probab=33.48 E-value=51 Score=31.39 Aligned_cols=46 Identities=20% Similarity=0.168 Sum_probs=37.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDS 50 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 50 (473)
...++++-.+|.|-..=+.++|++|.++|..|+|+..+.+...+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~ 201 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN 201 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH
Confidence 3457788888889999999999999999999999988865554443
No 451
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=33.43 E-value=2.9e+02 Score=27.38 Aligned_cols=41 Identities=20% Similarity=0.193 Sum_probs=33.3
Q ss_pred cEEE-EEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh
Q 042753 6 AHIL-VYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP 46 (473)
Q Consensus 6 ~~Il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 46 (473)
.+|+ ++-..|.|-..-...||..+.++|+.|.+++.+.++.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 4554 5555677999999999999999999999999987743
No 452
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=33.35 E-value=1e+02 Score=28.75 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=28.9
Q ss_pred eeeccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc
Q 042753 357 FLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 357 ~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~ 426 (473)
+|-|||.|+-.|-|.- .- ++|+. .++ .++-..-...++|++.+.+.
T Consensus 207 lVlHGgSGip~~eI~~-------------------aI-~~GV~-KvN---i~Td~~~A~~~avr~~~~~~ 252 (286)
T COG0191 207 LVLHGGSGIPDEEIRE-------------------AI-KLGVA-KVN---IDTDLQLAFTAAVREYLAEN 252 (286)
T ss_pred EEEeCCCCCCHHHHHH-------------------HH-HhCce-EEe---eCcHHHHHHHHHHHHHHHhC
Confidence 7999999654443221 11 22554 355 56677778888898888644
No 453
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=33.32 E-value=2.8e+02 Score=27.32 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEe
Q 042753 92 PALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFS 132 (473)
Q Consensus 92 ~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~ 132 (473)
..+.+.+++. +||++|.+.. ....++++|||++.+.
T Consensus 338 ~~~~~~~~~~--~pdl~ig~~~---~~~~~~~~~ip~~~~~ 373 (399)
T cd00316 338 EELEELIREL--KPDLIIGGSK---GRYIAKKLGIPLVRIG 373 (399)
T ss_pred HHHHHHHhhc--CCCEEEECCc---HHHHHHHhCCCEEEcC
Confidence 3455567777 8999999964 6778888999998653
No 454
>PRK09739 hypothetical protein; Provisional
Probab=33.30 E-value=95 Score=27.25 Aligned_cols=37 Identities=16% Similarity=0.061 Sum_probs=23.8
Q ss_pred ccEEEEEc-CCCCCC--hHHHHHHHHHHHhCCCeEEEEeC
Q 042753 5 GAHILVYP-FPTSGH--IIPLLDLTNRLLTLGLNVTVLIT 41 (473)
Q Consensus 5 ~~~Il~~~-~~~~GH--~~p~l~La~~L~~rGh~Vt~~~~ 41 (473)
|+||+++. +|-.+- ..-...+++.|.++||+|+++--
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 78998665 453332 12245567777888999987753
No 455
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=33.21 E-value=56 Score=29.69 Aligned_cols=42 Identities=10% Similarity=0.069 Sum_probs=29.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhhhh
Q 042753 8 ILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPLLD 49 (473)
Q Consensus 8 Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~ 49 (473)
|++.-.++.+=+.=...|++.|.++ ||+|.++-++.....+.
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~ 45 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVR 45 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHh
Confidence 4444343333336789999999999 99999999986554444
No 456
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=33.13 E-value=45 Score=33.00 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=35.2
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDS 50 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 50 (473)
++||++...++.|= .-...+.+.|.+.|++|.++.++...+.+..
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHHH
Confidence 57888776665544 5589999999999999999999976665543
No 457
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=32.93 E-value=1.2e+02 Score=30.32 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=25.8
Q ss_pred EEEEE-cCCCCCChHHHHHHHHHHHhCCCeEEE
Q 042753 7 HILVY-PFPTSGHIIPLLDLTNRLLTLGLNVTV 38 (473)
Q Consensus 7 ~Il~~-~~~~~GH~~p~l~La~~L~~rGh~Vt~ 38 (473)
+|++- +.++.|-..-++.|.++|.+||+.|.=
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqp 34 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQP 34 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccc
Confidence 34433 466779999999999999999999853
No 458
>PRK10490 sensor protein KdpD; Provisional
Probab=32.83 E-value=93 Score=34.72 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=32.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
||.+-..||-|-..-|+.-|++|.++|++|.+-.-+
T Consensus 26 ~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e 61 (895)
T PRK10490 26 KIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVE 61 (895)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 788888999999999999999999999999875554
No 459
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=32.83 E-value=3.5e+02 Score=27.30 Aligned_cols=96 Identities=14% Similarity=0.129 Sum_probs=54.2
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh--hhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP--LLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKF 82 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~--~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 82 (473)
|+||++. +.|.+ ...+++++.+.|++|+.+.+..... .+... . .+..++... . .. .
T Consensus 2 ~kkili~---g~g~~--~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~a-------D-~~~~~~~~~----~-~~---~- 59 (449)
T TIGR00514 2 LDKILIA---NRGEI--ALRILRACKELGIKTVAVHSTADRDALHVLLA-------D-EAVCIGPAP----S-AK---S- 59 (449)
T ss_pred cceEEEe---CCCHH--HHHHHHHHHHcCCeEEEEEChhhhcccccccC-------C-EEEEcCCCC----c-hh---c-
Confidence 6788887 34444 6778888888899999987743211 11111 1 222222100 0 00 0
Q ss_pred HHHHHHHh-hHHHHHHHhcCCCCCcEEEeCCCc---c-hHHHHHHHhCCCcEE
Q 042753 83 MRVLRELH-YPALLDWFKSHPSPPVAILSDFFL---G-WTQGLAAELGLPRVV 130 (473)
Q Consensus 83 ~~~~~~~~-~~~l~~~l~~~~~~pD~VV~D~~~---~-~~~~~A~~~giP~v~ 130 (473)
.. .+.+.++.++. ++|+|+...-+ . ....+++++|+|++.
T Consensus 60 ------y~d~~~l~~~a~~~--~id~I~pg~g~~se~~~~a~~~e~~Gi~~~g 104 (449)
T TIGR00514 60 ------YLNIPNIISAAEIT--GADAIHPGYGFLSENANFAEQCERSGFTFIG 104 (449)
T ss_pred ------hhCHHHHHHHHHHh--CCCEEEeCCCccccCHHHHHHHHHCCCcEEC
Confidence 11 24566666777 99999864411 1 124577889999776
No 460
>PRK04330 hypothetical protein; Provisional
Probab=32.77 E-value=2.1e+02 Score=21.42 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhccCCCcc
Q 042753 415 LARLLAQSVDGP---RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINELKSGKNLT 471 (473)
Q Consensus 415 l~~~i~~~l~~~---~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~ 471 (473)
....++++.+|. ...|++|.+..+.++ .++.+-...+...|..|.+-....||+
T Consensus 14 ~~~~L~~I~~D~sVPRNIRraa~ea~~~L~---~e~~~~~vRaA~AIs~LdeIs~DPNmP 70 (88)
T PRK04330 14 AIQMLEEIINDTSVPRNIRRAATEAKEILL---NEEESPGVRAATAISILDEISNDPNMP 70 (88)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHh---CcCcchhHHHHHHHHHHHHhhcCCCCC
Confidence 344556666776 456666666666665 344456666777778888888888876
No 461
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=32.72 E-value=1e+02 Score=27.48 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCC--ChHHHHHHHHHHHh
Q 042753 6 AHILVYPFPTSG--HIIPLLDLTNRLLT 31 (473)
Q Consensus 6 ~~Il~~~~~~~G--H~~p~l~La~~L~~ 31 (473)
||||+.-|.-+| ..||...++++|..
T Consensus 1 M~ILvTGF~PF~~~~~NPS~~~~~~L~~ 28 (208)
T PRK13194 1 MKVLVTGFEPFGGDKKNPTMDIVKALDG 28 (208)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHhccc
Confidence 457766554443 58999999999966
No 462
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=32.44 E-value=76 Score=29.38 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=30.6
Q ss_pred ccEEE-EEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHIL-VYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|+||+ +.-=+|-|-..-...||..|+++|++|.++=.+
T Consensus 1 m~~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 1 MALVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 56664 444567799999999999999999999888443
No 463
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=32.40 E-value=2.1e+02 Score=26.23 Aligned_cols=98 Identities=19% Similarity=0.187 Sum_probs=56.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCC-C-----CCCChhh---HHHHHHHHHHHhhH
Q 042753 22 LLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKW-P-----AGSPATR---LLKFMRVLRELHYP 92 (473)
Q Consensus 22 ~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~-~-----~~~~~~~---~~~~~~~~~~~~~~ 92 (473)
+-..++.+.+.|-+|.+.+..++...+..... ...+-+..+|.+.. . ++++... ...|. .+
T Consensus 117 ~~ea~~~~~~~~~rVflt~G~~~l~~f~~~~~---~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs-------~~ 186 (257)
T COG2099 117 IEEAAEAAKQLGRRVFLTTGRQNLAHFVAADA---HSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFS-------EE 186 (257)
T ss_pred HHHHHHHHhccCCcEEEecCccchHHHhcCcc---cceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcC-------hH
Confidence 34566666667766666666666665554421 11344445553321 0 2222210 01122 23
Q ss_pred HHHHHHhcCCCCCcEEEeCCCcc-----hHHHHHHHhCCCcEEE
Q 042753 93 ALLDWFKSHPSPPVAILSDFFLG-----WTQGLAAELGLPRVVF 131 (473)
Q Consensus 93 ~l~~~l~~~~~~pD~VV~D~~~~-----~~~~~A~~~giP~v~~ 131 (473)
.=..++++. +.|+||+=..-- .=..+|+++|||+|.+
T Consensus 187 ~n~all~q~--~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 187 DNKALLEQY--RIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred HHHHHHHHh--CCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 336778888 999999866533 2368999999999996
No 464
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=32.38 E-value=1.3e+02 Score=27.36 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=36.9
Q ss_pred ccEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhh
Q 042753 5 GAHILVYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLL 48 (473)
Q Consensus 5 ~~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 48 (473)
|+-|.|++ =||-|-..-.+.||.+|+++|-.|+++=.+++++..
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~ 45 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLA 45 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH
Confidence 55566666 567799999999999999999999999998886554
No 465
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.23 E-value=4.8e+02 Score=27.55 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=62.4
Q ss_pred CCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhh--cCCCeEeecCccHHHhh
Q 042753 272 DESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRV--AGRGYVIRGWSQQVAIL 349 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~v~~~~pq~~lL 349 (473)
.+|.-|++.|+...+....=-.+=.+++..+.++|..+++.. .... ..++.-.. .-+-++
T Consensus 418 ~~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG~-----f~m~--~~EL~Ta~r~~lpvi~----------- 479 (595)
T PRK09107 418 EEPNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDAS-----IQMC--IQEMSTAVQYNLPVKI----------- 479 (595)
T ss_pred CCCCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEEEcCch-----hhcc--HHHHHHHHHhCCCeEE-----------
Confidence 345556665554444444434455556667778887777753 0000 01111111 111122
Q ss_pred hccCccceeeccCchhHHHH--HhhCCeEecCcccccchhhHHHHHHHhcc-eEEeccCCCCCCCHHHHHHHHHHHhC
Q 042753 350 RHKAVGAFLTHCGWNSVLEG--VSAGVVMLTWPMDADQYTNAQLLVDQLGV-GIRVGEGTRNIPESDELARLLAQSVD 424 (473)
Q Consensus 350 ~~~~v~~~ItHgG~~s~~ea--l~~GvP~l~~P~~~DQ~~na~rv~~~~G~-G~~l~~~~~~~~~~~~l~~~i~~~l~ 424 (473)
.++++||+|.+... +.+|.+.-.. .....++.++..+ .+|+ |.+++ +.++|.+++++.+.
T Consensus 480 ------vV~NN~~y~~i~~~q~~~~~~~~~~~-~~~~~~d~~~lA~-a~G~~~~~v~-------~~~el~~al~~a~~ 542 (595)
T PRK09107 480 ------FILNNQYMGMVRQWQQLLHGNRLSHS-YTEAMPDFVKLAE-AYGAVGIRCE-------KPGDLDDAIQEMID 542 (595)
T ss_pred ------EEEeCCccHHHHHHHHHHhCCccccc-cCCCCCCHHHHHH-HCCCeEEEEC-------CHHHHHHHHHHHHh
Confidence 28899999987533 4445431111 1112357777666 3343 33443 68999999999875
No 466
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=32.18 E-value=5.7e+02 Score=26.22 Aligned_cols=109 Identities=16% Similarity=0.118 Sum_probs=68.2
Q ss_pred eEeecCccHHH---hhhccCccceee--ccCch-hHHHHHhhCC----eEecCcccccchhhHHHHHHHhcceEEeccCC
Q 042753 337 YVIRGWSQQVA---ILRHKAVGAFLT--HCGWN-SVLEGVSAGV----VMLTWPMDADQYTNAQLLVDQLGVGIRVGEGT 406 (473)
Q Consensus 337 v~v~~~~pq~~---lL~~~~v~~~It--HgG~~-s~~eal~~Gv----P~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 406 (473)
+.+.+.+|+.+ ++..+++ ++|| .-|+| ...|.++++. |+|+--+. -|. + .+.-++.++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa-----Gaa--~-~l~~AllVN--- 431 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA-----GAA--V-ELKGALLTN--- 431 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEeccc-----cch--h-hcCCCEEEC---
Confidence 45567778766 4556887 5565 46888 5569999877 44433221 121 1 334467776
Q ss_pred CCCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 042753 407 RNIPESDELARLLAQSVDGP-RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 407 ~~~~~~~~l~~~i~~~l~~~-~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~ 464 (473)
-.+.++++++|.++|+.+ ++-+++.+++.+.++ .-.+..=.+.+++.+...
T Consensus 432 --P~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~-----~~d~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 432 --PYDPVRMDETIYVALAMPKAEQQARMREMFDAVN-----YYDVQRWADEFLAAVSPQ 483 (487)
T ss_pred --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhhhc
Confidence 468999999999999987 344455555555553 234555666677666553
No 467
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=32.09 E-value=43 Score=28.93 Aligned_cols=45 Identities=20% Similarity=0.385 Sum_probs=34.1
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLD 49 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~ 49 (473)
...++++-.+|.|-..-..++++++.++|+.|.|+..++....++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 456888888899999999999999999999999998875444443
No 468
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=32.04 E-value=1.7e+02 Score=30.75 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=21.7
Q ss_pred ccceeeccCc------hhHHHHHhhCCeEecCc
Q 042753 354 VGAFLTHCGW------NSVLEGVSAGVVMLTWP 380 (473)
Q Consensus 354 v~~~ItHgG~------~s~~eal~~GvP~l~~P 380 (473)
.+++++|.|- +.+.+|...++|||++.
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 4458888884 47788999999999985
No 469
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=31.74 E-value=1e+02 Score=23.99 Aligned_cols=38 Identities=13% Similarity=-0.010 Sum_probs=26.8
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|+||++++..|.|--.-...+-+.+.++|.++.+-..+
T Consensus 1 MkkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~ 38 (104)
T PRK09590 1 MKKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAIT 38 (104)
T ss_pred CcEEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEec
Confidence 67899888777755566666666666788887765444
No 470
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.66 E-value=62 Score=33.92 Aligned_cols=52 Identities=12% Similarity=0.136 Sum_probs=38.9
Q ss_pred cceeeccCchhHHHHHhh----CCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc
Q 042753 355 GAFLTHCGWNSVLEGVSA----GVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 355 ~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~ 426 (473)
.++|+-||=||++.+... ++|++.+- .|...= -...+.+++.++|++++++.
T Consensus 350 dlvi~lGGDGT~L~aa~~~~~~~~PilGin-----------------~G~lGF---L~~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 350 SHIISIGGDGTVLRASKLVNGEEIPIICIN-----------------MGTVGF---LTEFSKEEIFKAIDSIISGE 405 (569)
T ss_pred CEEEEECCcHHHHHHHHHhcCCCCCEEEEc-----------------CCCCCc---CcccCHHHHHHHHHHHHcCC
Confidence 359999999999999764 78888872 232211 23577899999999999875
No 471
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=31.32 E-value=87 Score=31.01 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHH----------HHHHhCCCcEE
Q 042753 80 LKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQG----------LAAELGLPRVV 130 (473)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~----------~A~~~giP~v~ 130 (473)
..|....+ .....+.+++++. +||++|+.+.+..+.- +.+++|||.++
T Consensus 55 nYf~en~e-ea~~~i~~mv~k~--~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt 112 (431)
T TIGR01918 55 SFFGENLE-EAVARVLEMLKDK--EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVT 112 (431)
T ss_pred hhhhhCHH-HHHHHHHHHHHhc--CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEE
No 472
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=31.13 E-value=87 Score=31.00 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHH----------HHHHhCCCcEE
Q 042753 80 LKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQG----------LAAELGLPRVV 130 (473)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~----------~A~~~giP~v~ 130 (473)
..|....+ .....+.+++++. +||++|+.+.+..+.- +.+++|||.++
T Consensus 55 nYf~en~e-ea~~~i~~mv~k~--~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt 112 (431)
T TIGR01917 55 SFFGENLE-EAKAKVLEMIKGA--NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFT 112 (431)
T ss_pred hhhhhCHH-HHHHHHHHHHHhc--CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEE
No 473
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=31.06 E-value=49 Score=28.02 Aligned_cols=32 Identities=19% Similarity=0.054 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLIT 41 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 41 (473)
|+||.|+-.+.. -.++|+.|.++||+|+....
T Consensus 1 m~~Ig~IGlG~m-----G~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 1 MMKIGFIGLGNM-----GSAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp -BEEEEE--SHH-----HHHHHHHHHHTTTEEEEEES
T ss_pred CCEEEEEchHHH-----HHHHHHHHHhcCCeEEeecc
Confidence 778888866544 46899999999999988763
No 474
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=31.06 E-value=85 Score=29.27 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=32.9
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|.+|.|+-=+|-|-..-...||..|+++|++|.++=-+
T Consensus 1 ~~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~D 38 (279)
T PRK13230 1 MRKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCD 38 (279)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeC
Confidence 67788887778899999999999999999998888544
No 475
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=30.94 E-value=4.5e+02 Score=25.91 Aligned_cols=87 Identities=13% Similarity=0.180 Sum_probs=57.0
Q ss_pred CCeEeecCccH----HHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcc-eEEeccCCCCC
Q 042753 335 RGYVIRGWSQQ----VAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGV-GIRVGEGTRNI 409 (473)
Q Consensus 335 ~nv~v~~~~pq----~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~-G~~l~~~~~~~ 409 (473)
.++.+ .-.++ ..+++++++ +-=+=+=|+.=|++.|+|.+++-+ |+.....++ .+|+ +..++ ...
T Consensus 266 ~~i~~-~~d~~~~~~~~~l~~~dl---~Vg~R~HsaI~al~~g~p~i~i~Y---~~K~~~l~~-~~gl~~~~~~---i~~ 334 (385)
T COG2327 266 AEILV-SSDEYAEELGGILAACDL---IVGMRLHSAIMALAFGVPAIAIAY---DPKVRGLMQ-DLGLPGFAID---IDP 334 (385)
T ss_pred cceEe-ecchHHHHHHHHhccCce---EEeehhHHHHHHHhcCCCeEEEee---cHHHHHHHH-HcCCCccccc---CCC
Confidence 44443 44455 446677774 333335578889999999999954 444444444 5465 34455 778
Q ss_pred CCHHHHHHHHHHHhCCcHHHHHH
Q 042753 410 PESDELARLLAQSVDGPRRERLK 432 (473)
Q Consensus 410 ~~~~~l~~~i~~~l~~~~~~~~~ 432 (473)
++.+.+...+.+.+++.+..+++
T Consensus 335 ~~~~~l~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 335 LDAEILSAVVLERLTKLDELRER 357 (385)
T ss_pred CchHHHHHHHHHHHhccHHHHhh
Confidence 99999999999888766344444
No 476
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.90 E-value=80 Score=25.44 Aligned_cols=38 Identities=26% Similarity=0.389 Sum_probs=28.1
Q ss_pred EEE-EEcCCC-CCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 7 HIL-VYPFPT-SGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 7 ~Il-~~~~~~-~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
++| ++-.|. .-.+.-.+-+...|.++|++||+++++..
T Consensus 4 kvlv~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa 43 (148)
T COG4081 4 KVLVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAA 43 (148)
T ss_pred eEEEEecCCCCCccchHHHHHHHHhhccCccEEEecCHhh
Confidence 454 333443 35666778889999999999999999843
No 477
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.89 E-value=4.1e+02 Score=24.23 Aligned_cols=89 Identities=15% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhh----------
Q 042753 22 LLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHY---------- 91 (473)
Q Consensus 22 ~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 91 (473)
....++++.++||+|.+-.+ .+-..++......+.+...-....+.+++.+.
T Consensus 66 ~~~~~~~A~~~G~evlih~P------------------meP~~~~~~e~gtL~~~~s~~e~~~rl~~a~~~v~~~~GlnN 127 (250)
T COG2861 66 AREWAQKARNAGHEVLIHMP------------------MEPFSYPKIEPGTLRPGMSAEEILRRLRKAMNKVPDAVGLNN 127 (250)
T ss_pred hHHHHHHHHhcCCEEEEecc------------------CCcccCCCCCCCCcccCCCHHHHHHHHHHHHhhCccceeehh
Q ss_pred ----------HHHHHHHhcCCCCCcEEEeCCCcc---hHHHHHHHhCCCcE
Q 042753 92 ----------PALLDWFKSHPSPPVAILSDFFLG---WTQGLAAELGLPRV 129 (473)
Q Consensus 92 ----------~~l~~~l~~~~~~pD~VV~D~~~~---~~~~~A~~~giP~v 129 (473)
+.++.+++.+. +-++.+.|.-++ -+..+|.+.|||++
T Consensus 128 hmGs~~tsn~~aM~~~m~~Lk-~r~l~flDs~T~a~S~a~~iAk~~gVp~~ 177 (250)
T COG2861 128 HMGSRFTSNEDAMEKLMEALK-ERGLYFLDSGTIANSLAGKIAKEIGVPVI 177 (250)
T ss_pred hhhhhhcCcHHHHHHHHHHHH-HCCeEEEcccccccchhhhhHhhcCCcee
No 478
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=30.85 E-value=1.2e+02 Score=26.59 Aligned_cols=42 Identities=21% Similarity=0.070 Sum_probs=29.6
Q ss_pred HhhHHHHHHHhcCCCCCcEEEeCCC--cchHHHHHHHhCCCcEEEe
Q 042753 89 LHYPALLDWFKSHPSPPVAILSDFF--LGWTQGLAAELGLPRVVFS 132 (473)
Q Consensus 89 ~~~~~l~~~l~~~~~~pD~VV~D~~--~~~~~~~A~~~giP~v~~~ 132 (473)
.+...+.+.+.+. ++|+|++=.. ++.+..+|..+|+|++..-
T Consensus 37 ~i~~~la~~~~~~--~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 37 EIGKEFARRFKDE--GITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred HHHHHHHHHhccC--CCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 3344555555666 8999996433 3367889999999998863
No 479
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=30.83 E-value=1.2e+02 Score=27.48 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=37.9
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPL 47 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 47 (473)
|.+|.++-=++.|--.-...++.+|++.|+.|..+..++-.+.
T Consensus 1 mr~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDS 43 (278)
T COG1348 1 MRQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADS 43 (278)
T ss_pred CceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcch
Confidence 6789999999999999999999999999999999998755443
No 480
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=30.61 E-value=5.5e+02 Score=25.54 Aligned_cols=38 Identities=21% Similarity=0.088 Sum_probs=30.1
Q ss_pred cEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 6 AHILVYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 6 ~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
..|.+.. =||.|-..-...||..|+.+|++|.++=.+.
T Consensus 122 ~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 3344444 5788999999999999999999998885543
No 481
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=30.54 E-value=54 Score=30.23 Aligned_cols=111 Identities=14% Similarity=0.052 Sum_probs=61.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccC--------CCCCCeeEEEcCCCCCCCCCChh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNAN--------HPSTSLQSLVLPQPKWPAGSPAT 77 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~--------~~~~~~~f~~l~~~~~~~~~~~~ 77 (473)
.+|.+.-.|+-|--.-.-.|+++|.++|++|-++..++..+.--.++-. ...+++=+.+.+ ...
T Consensus 30 ~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~a--------tRG 101 (266)
T PF03308_consen 30 HVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMA--------TRG 101 (266)
T ss_dssp EEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE-----------S
T ss_pred eEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecC--------cCC
Confidence 3456777999999999999999999999999999877554332222100 011233222222 122
Q ss_pred hHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHhCCCcEEE
Q 042753 78 RLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG--WTQGLAAELGLPRVVF 131 (473)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~giP~v~~ 131 (473)
.+..+...+. ....+++.. ++|+||.+..-. .-..++...++=++.+
T Consensus 102 ~lGGls~~t~-----~~v~ll~aa--G~D~IiiETVGvGQsE~~I~~~aD~~v~v~ 150 (266)
T PF03308_consen 102 SLGGLSRATR-----DAVRLLDAA--GFDVIIIETVGVGQSEVDIADMADTVVLVL 150 (266)
T ss_dssp SHHHHHHHHH-----HHHHHHHHT--T-SEEEEEEESSSTHHHHHHTTSSEEEEEE
T ss_pred CCCCccHhHH-----HHHHHHHHc--CCCEEEEeCCCCCccHHHHHHhcCeEEEEe
Confidence 3333333332 345567777 999999997754 3356666666554444
No 482
>PRK06835 DNA replication protein DnaC; Validated
Probab=30.38 E-value=56 Score=31.48 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=35.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLD 49 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~ 49 (473)
..++|+-.+|.|-..=..++|++|.++|+.|.|++.......+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~ 227 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILR 227 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHH
Confidence 55778878888888889999999999999999999875544443
No 483
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.03 E-value=91 Score=29.45 Aligned_cols=39 Identities=21% Similarity=0.075 Sum_probs=30.5
Q ss_pred CCCCccEEEEEcCCCCCChHHHH-HHHHHHHhCCCeEEEE
Q 042753 1 MLPAGAHILVYPFPTSGHIIPLL-DLTNRLLTLGLNVTVL 39 (473)
Q Consensus 1 ~~~~~~~Il~~~~~~~GH~~p~l-~La~~L~~rGh~Vt~~ 39 (473)
|.++|++|++++-+..-+..... .+++.|.++|++|.+-
T Consensus 1 ~~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~ 40 (292)
T PRK03378 1 MNNHFKCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVE 40 (292)
T ss_pred CCccCCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 78889999999987775555544 5677788999998764
No 484
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=29.96 E-value=1e+02 Score=27.85 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHh----CCCcEEEecchHH
Q 042753 92 PALLDWFKSHPSPPVAILSDFFLG--WTQGLAAEL----GLPRVVFSPSGAF 137 (473)
Q Consensus 92 ~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~----giP~v~~~~~~~~ 137 (473)
......++++ .||++|+-.... .+..-|+++ |||+|.++-.+..
T Consensus 50 ~~~~~~~~~~--~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~ 99 (277)
T PRK00994 50 EVVKKMLEEW--KPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGK 99 (277)
T ss_pred HHHHHHHHhh--CCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCcc
Confidence 4456677889 999998765533 445555544 9999998766553
No 485
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=29.76 E-value=1.1e+02 Score=25.12 Aligned_cols=39 Identities=15% Similarity=0.131 Sum_probs=24.3
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|.+|.|+-.....=..-...|+++-.++|++|.+.+...
T Consensus 1 Mt~v~Fy~l~~~~~~~~~c~L~~k~~~~g~rv~V~~~d~ 39 (137)
T PF04364_consen 1 MTRVDFYHLSSDDLERFACRLAEKAYRQGQRVLVLCPDE 39 (137)
T ss_dssp -EEEEEEE-S----HHHHHHHHHHHHHTT--EEEE-SSH
T ss_pred CCeEEEEEcCCCcHHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 789998887665556667778888888899999999763
No 486
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=29.74 E-value=3.8e+02 Score=30.60 Aligned_cols=41 Identities=17% Similarity=0.047 Sum_probs=31.0
Q ss_pred CccEEEEEcCCC--CCC----hHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 4 AGAHILVYPFPT--SGH----IIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 4 ~~~~Il~~~~~~--~GH----~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
..+|||++-.+. .|+ =.....++++|.+.||+|+++.+...
T Consensus 5 ~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi~v~~np~ 51 (1050)
T TIGR01369 5 DIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPA 51 (1050)
T ss_pred CCcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEEEEecchh
Confidence 368898887654 253 35667889999999999999988643
No 487
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=29.73 E-value=1.9e+02 Score=30.24 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=21.7
Q ss_pred ccceeeccCc------hhHHHHHhhCCeEecCc
Q 042753 354 VGAFLTHCGW------NSVLEGVSAGVVMLTWP 380 (473)
Q Consensus 354 v~~~ItHgG~------~s~~eal~~GvP~l~~P 380 (473)
.+++++|.|- +.+.||.+.++|+|++-
T Consensus 65 ~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 65 VGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 4458888874 47899999999999983
No 488
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=29.50 E-value=79 Score=26.68 Aligned_cols=33 Identities=15% Similarity=0.056 Sum_probs=24.7
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
..+|+++-.+. .....++.|.+.||+|+++++.
T Consensus 13 ~~~vlVvGGG~-----va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGK-----IAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCH-----HHHHHHHHHHhCCCEEEEEcCc
Confidence 56777765443 3377899999999999999644
No 489
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=29.40 E-value=1.7e+02 Score=25.95 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcC
Q 042753 23 LDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLP 66 (473)
Q Consensus 23 l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~ 66 (473)
..|+++|.++||+|+.++............ .++.+...+
T Consensus 12 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~-----~~~~~~~~d 50 (236)
T PF01370_consen 12 SALVRQLLKKGHEVIVLSRSSNSESFEEKK-----LNVEFVIGD 50 (236)
T ss_dssp HHHHHHHHHTTTEEEEEESCSTGGHHHHHH-----TTEEEEESE
T ss_pred HHHHHHHHHcCCcccccccccccccccccc-----ceEEEEEee
Confidence 467999999999998777766544332221 146666555
No 490
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=29.31 E-value=73 Score=30.60 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=28.0
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
.+|+||.++-.+..| ..+|..|.++||+|+++...
T Consensus 2 ~~~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 2 HHGMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCCCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 346799888666555 57899999999999999874
No 491
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=29.15 E-value=1.6e+02 Score=24.98 Aligned_cols=44 Identities=11% Similarity=0.121 Sum_probs=28.9
Q ss_pred CCCCCChHHHHHHHHHHHhCCCeEEEEeCCC-ChhhhhhhccCCCCCCeeEEEcC
Q 042753 13 FPTSGHIIPLLDLTNRLLTLGLNVTVLITQN-NLPLLDSLNANHPSTSLQSLVLP 66 (473)
Q Consensus 13 ~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~-~~~~i~~~~~~~~~~~~~f~~l~ 66 (473)
..+-|++. +|+++|.++|.+|+.++.+. ....+... .=+|+.+.
T Consensus 112 vSgD~DF~---~Lv~~lre~G~~V~v~g~~~~ts~~L~~a-------cd~FI~L~ 156 (160)
T TIGR00288 112 VTRDADFL---PVINKAKENGKETIVIGAEPGFSTALQNS-------ADIAIILG 156 (160)
T ss_pred EeccHhHH---HHHHHHHHCCCEEEEEeCCCCChHHHHHh-------cCeEEeCC
Confidence 34556655 57788889999999999664 44444443 23566554
No 492
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=29.06 E-value=4.8e+02 Score=24.29 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=50.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHh--CCCeEEEEeCCCC--hhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLT--LGLNVTVLITQNN--LPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLK 81 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~--rGh~Vt~~~~~~~--~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~ 81 (473)
.+|++...++.++ +-...+.+.|.+ .+.++++++.+.+ .+.+++.... .+++.+.
T Consensus 171 ~~iLi~~GG~d~~-~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~~~l~~~~~~--~~~i~~~------------------ 229 (279)
T TIGR03590 171 RRVLVSFGGADPD-NLTLKLLSALAESQINISITLVTGSSNPNLDELKKFAKE--YPNIILF------------------ 229 (279)
T ss_pred CeEEEEeCCcCCc-CHHHHHHHHHhccccCceEEEEECCCCcCHHHHHHHHHh--CCCEEEE------------------
Confidence 4565555444443 334556666655 4667888877644 2233332110 1123322
Q ss_pred HHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecc
Q 042753 82 FMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~ 134 (473)
...+.+.++++.. |++|+-.- ....=+-.+|+|++.+...
T Consensus 230 -------~~~~~m~~lm~~a----Dl~Is~~G--~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 230 -------IDVENMAELMNEA----DLAIGAAG--STSWERCCLGLPSLAICLA 269 (279)
T ss_pred -------eCHHHHHHHHHHC----CEEEECCc--hHHHHHHHcCCCEEEEEec
Confidence 1124556666644 99999433 2333344579999997553
No 493
>PRK07004 replicative DNA helicase; Provisional
Probab=28.98 E-value=5.9e+02 Score=25.89 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=32.9
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCCCChhh
Q 042753 8 ILVYPFPTSGHIIPLLDLTNRLLT-LGLNVTVLITQNNLPL 47 (473)
Q Consensus 8 Il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~ 47 (473)
|++...|+.|-..-.+.+|..++. .|+.|.|++-+-....
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~q 256 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQ 256 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHH
Confidence 566778999999999999998864 6999999998865544
No 494
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=28.88 E-value=1.2e+02 Score=26.26 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=28.8
Q ss_pred HHHHHHhcCCCCCcEEEeCCC--cchHHHHHHHhCCCcEEE
Q 042753 93 ALLDWFKSHPSPPVAILSDFF--LGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 93 ~l~~~l~~~~~~pD~VV~D~~--~~~~~~~A~~~giP~v~~ 131 (473)
.+.+.++.. ++|.|++=.. +..+..+|.++|+|+|..
T Consensus 44 ~~~~~~~~~--~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKDD--GIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhccc--CCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 556666666 8999996544 347889999999999986
No 495
>CHL00175 minD septum-site determining protein; Validated
Probab=28.85 E-value=1.1e+02 Score=28.55 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=32.8
Q ss_pred CCccEEEEEc--CCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 3 PAGAHILVYP--FPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 3 ~~~~~Il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
+.|+||+.+. -||-|=..-...||..|.++|++|.++=.+.
T Consensus 12 ~~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 12 ATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred CCCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 3577776444 5677999999999999999999988885543
No 496
>PRK00170 azoreductase; Reviewed
Probab=28.75 E-value=1.1e+02 Score=26.73 Aligned_cols=38 Identities=16% Similarity=0.003 Sum_probs=22.6
Q ss_pred ccEEEEEc-CCCC--CChHHH-HHHHHHHHhC--CCeEEEEeCC
Q 042753 5 GAHILVYP-FPTS--GHIIPL-LDLTNRLLTL--GLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~-~~~~--GH~~p~-l~La~~L~~r--Gh~Vt~~~~~ 42 (473)
|+||+++. +|-. |...-+ ..+.+.|.++ ||+|+++--.
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~ 44 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLA 44 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 67887555 4433 222222 2456667777 9999887643
No 497
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=28.52 E-value=82 Score=29.70 Aligned_cols=32 Identities=31% Similarity=0.348 Sum_probs=24.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
+||+++-.++.| ..+|..|.+.||+|+++..+
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~ 32 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRP 32 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecH
Confidence 467777665554 56788999999999999874
No 498
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=28.50 E-value=72 Score=22.39 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCCC
Q 042753 22 LLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 22 ~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
-+..|..|.++|++|+++-..+
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHCCCcEEEEecCc
Confidence 3677899999999999998764
No 499
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=28.37 E-value=93 Score=27.53 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=25.8
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
+..+|+++-.+..| ...++.|.+.|++||++++.
T Consensus 9 ~~k~vLVIGgG~va-----~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVA-----GRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHHCCCeEEEEcCC
Confidence 35778877554433 67789999999999999864
No 500
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=28.32 E-value=1e+02 Score=29.05 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=33.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
|||.++-=+|-|-..-...||..|+++|++|.++=.+..
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 458888888999999999999999999999988866543
Done!